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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013746 Arthrobacter alpinus strain A3 plasmid unnamed, complete sequence 0 crisprs PD-DExK 0 0 0 0
NZ_CP013745 Arthrobacter alpinus strain A3 chromosome, complete genome 7 crisprs RT,csa3,cas3,DinG,WYL,DEDDh 0 2 2 0

Results visualization

1. NZ_CP013745
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013745_1 834766-834905 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013745_2 842280-842358 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013745_3 1679906-1680006 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013745_4 1861658-1861755 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013745_5 2305369-2305462 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013745_6 3294039-3294123 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013745_7 4166632-4166753 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP013745_1 1.2|834852|31|NZ_CP013745|CRISPRCasFinder 834852-834882 31 CP007645 Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence 99240-99270 6 0.806
NZ_CP013745_1 1.2|834852|31|NZ_CP013745|CRISPRCasFinder 834852-834882 31 NZ_CP007795 Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence 900198-900228 7 0.774
NZ_CP013745_1 1.2|834852|31|NZ_CP013745|CRISPRCasFinder 834852-834882 31 NC_012849 Ralstonia pickettii 12D plasmid pRp12D02, complete sequence 111376-111406 8 0.742
NZ_CP013745_1 1.2|834852|31|NZ_CP013745|CRISPRCasFinder 834852-834882 31 MN131137 Aeromonas phage D6, complete genome 79424-79454 9 0.71
NZ_CP013745_1 1.2|834852|31|NZ_CP013745|CRISPRCasFinder 834852-834882 31 MN159079 Aeromonas phage D9, partial genome 161923-161953 9 0.71
NZ_CP013745_1 1.2|834852|31|NZ_CP013745|CRISPRCasFinder 834852-834882 31 MK838116 Aeromonas phage LAh10, complete genome 23982-24012 9 0.71
NZ_CP013745_1 1.2|834852|31|NZ_CP013745|CRISPRCasFinder 834852-834882 31 MN102098 Aeromonas phage D3, complete genome 79042-79072 9 0.71
NZ_CP013745_2 2.1|842304|31|NZ_CP013745|CRISPRCasFinder 842304-842334 31 NZ_AP022611 Mycolicibacterium madagascariense strain JCM 13574 plasmid pJCM13574 126422-126452 9 0.71

1. spacer 1.2|834852|31|NZ_CP013745|CRISPRCasFinder matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 6, identity: 0.806

cgctgttgaagctccggttgaggccgaggct	CRISPR spacer
cgctgttgaacctccggttggggttttggct	Protospacer
********** *********.**..  ****

2. spacer 1.2|834852|31|NZ_CP013745|CRISPRCasFinder matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 7, identity: 0.774

cgctgttgaagctccggttgaggccgaggct	CRISPR spacer
tggcgttggcgctccggttgaggccgagacg	Protospacer
.* .****. ******************.* 

3. spacer 1.2|834852|31|NZ_CP013745|CRISPRCasFinder matches to NC_012849 (Ralstonia pickettii 12D plasmid pRp12D02, complete sequence) position: , mismatch: 8, identity: 0.742

cgctgttgaagctccggttgaggccgaggct	CRISPR spacer
gacggaggaagcaccggttgaggccgatgcg	Protospacer
 .* *  ***** ************** ** 

4. spacer 1.2|834852|31|NZ_CP013745|CRISPRCasFinder matches to MN131137 (Aeromonas phage D6, complete genome) position: , mismatch: 9, identity: 0.71

cgctgttgaagctccggttgaggccgaggct	CRISPR spacer
actggttgaagcccaggttgaggccgaagta	Protospacer
  . ********.* ************.*. 

5. spacer 1.2|834852|31|NZ_CP013745|CRISPRCasFinder matches to MN159079 (Aeromonas phage D9, partial genome) position: , mismatch: 9, identity: 0.71

cgctgttgaagctccggttgaggccgaggct	CRISPR spacer
actggttgaagcccaggttgaggccgaagta	Protospacer
  . ********.* ************.*. 

6. spacer 1.2|834852|31|NZ_CP013745|CRISPRCasFinder matches to MK838116 (Aeromonas phage LAh10, complete genome) position: , mismatch: 9, identity: 0.71

cgctgttgaagctccggttgaggccgaggct	CRISPR spacer
actggttgaagcccaggttgaggccgaagta	Protospacer
  . ********.* ************.*. 

7. spacer 1.2|834852|31|NZ_CP013745|CRISPRCasFinder matches to MN102098 (Aeromonas phage D3, complete genome) position: , mismatch: 9, identity: 0.71

cgctgttgaagctccggttgaggccgaggct	CRISPR spacer
actggttgaagcccaggttgaggccgaagta	Protospacer
  . ********.* ************.*. 

8. spacer 2.1|842304|31|NZ_CP013745|CRISPRCasFinder matches to NZ_AP022611 (Mycolicibacterium madagascariense strain JCM 13574 plasmid pJCM13574) position: , mismatch: 9, identity: 0.71

agcgaagcgagtttggggaggcggggaggcg	CRISPR spacer
agcgaagcgactatggggaggcgcccacagt	Protospacer
********** * **********   * .  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2323281 : 2334501 17 Mycobacterium_phage(50.0%) integrase attL 2315858:2315874|attR 2333108:2333124
DBSCAN-SWA_2 2345800 : 2356513 11 Arthrobacter_phage(85.71%) tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage