CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009209	Burkholderia pseudomallei strain BDP chromosome 1, complete sequence	1 crisprs	csa3,DEDDh,cas3,WYL	0	0	9	0
NZ_CP009210	Burkholderia pseudomallei strain BDP chromosome 2, complete sequence	3 crisprs	csa3,cas3,DinG	1	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009209_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009209_1

3247518-3247659

Orphan

Consensus_repeat	Method
TCGCGCTGGAACGGCGTCTGCCGCGTATGCGGCGAACGCCGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009209_1

>merge|NZ_CP009209|1|3247518-3247659|CRISPRCasFinder
TCGCGCTGGAACGGCGTCTGCCGCGTATGCGGCGAACGCCGGCGTGCCAAGCGTTGAAGCGGTGGCGGACGAAATGCCGTTCGCAAGTTCGCAGCGGCTCGCGCAGGAACGGCGTCTGCCGCGTATGCGGCGAACGCCGGCG

>NZ_CP009209|1|1|3247518-3247659|CRISPRCasFinder
TCGCGCTGGAACGGCGTCTGCCGCGTATGCGGCGAACGCCGGCG	TGCCAAGCGTTGAAGCGGTGGCGGACGAAATGCCGTTCGCAAGTTCGCAGCGGC
TCGCGCAGGAACGGCGTCTGCCGCGTATGCGGCGAACGCCGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009209.1\|WP_041188564.1\|3245557_3246841_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP009209.1\|WP_004192878.1\|3231601_3231793_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009209.1\|WP_004193488.1\|3244751_3245156_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|181730
NZ_CP009209.1\|WP_004534949.1\|3247905_3248838_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP009209.1\|WP_004542979.1\|3255017_3255809_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239026
NZ_CP009209.1\|WP_004191162.1\|3229783_3229903_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009209.1\|WP_004534567.1\|3231789_3234066_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372320
NZ_CP009209.1\|WP_004521870.1\|3234908_3238253_+\|exodeoxyribonuclease-V-subunit-gamma	unknown	unknown	gnl\|CDD\|335690
NZ_CP009209.1\|WP_004193339.1\|3252596_3252902_+\|pentapeptide-MXKDX-repeat-protein	unknown	unknown	gnl\|CDD\|131998
NZ_CP009209.1\|WP_004543005.1\|3242058_3244755_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|236783
NZ_CP009209.1\|WP_004542991.1\|3256248_3257184_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|183067
NZ_CP009209.1\|WP_004543011.1\|3253877_3255002_+\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|226602
NZ_CP009209.1\|WP_004543008.1\|3238249_3242062_+\|exodeoxyribonuclease-V-subunit-beta	unknown	unknown	gnl\|CDD\|236784
NZ_CP009209.1\|WP_004542975.1\|3249108_3249333_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009209.1\|WP_004521865.1\|3250020_3251952_-\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NZ_CP009209.1\|WP_004193167.1\|3229899_3230079_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009209.1\|WP_160974052.1\|3256032_3256245_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009209.1\|WP_004195184.1\|3253062_3253887_+\|DUF1223-domain-containing-protein	unknown	unknown	gnl\|CDD\|369071
NZ_CP009209.1\|WP_004192513.1\|3230240_3231605_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182566
NZ_CP009209.1\|WP_004193128.1\|3249584_3249797_-\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|182532

Protein	Function_ID	Function_description	E-value
NZ_CP009209.1\|WP_041188564.1\|3245557_3246841_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	3.3191e-53
NZ_CP009209.1\|WP_004542991.1\|3256248_3257184_+\|EamA-family-transporter	gnl\|CDD\|183067	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional.	8.41633e-57
NZ_CP009209.1\|WP_004193488.1\|3244751_3245156_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|181730	PRK09256, PRK09256, aminoacyl-tRNA hydrolase.	3.43394e-65
NZ_CP009209.1\|WP_004534949.1\|3247905_3248838_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.49752e-12
NZ_CP009209.1\|WP_004542979.1\|3255017_3255809_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239026	cd02108, bact_SO_family_Moco, bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	6.54795e-91
NZ_CP009209.1\|WP_004193339.1\|3252596_3252902_+\|pentapeptide-MXKDX-repeat-protein	gnl\|CDD\|131998	TIGR02953, conserved_hypothetical_protein, pentapeptide MXKDX repeat protein. Members of this protein family are small bacterial proteins, each with an N-terminal signal sequence followed by up to 11 imperfect repeats of a pentapeptide. The pentapeptide repeat usually follows the form Met-Xaa-Lys-Asp-Xaa.	0.000353246
NZ_CP009209.1\|WP_004534567.1\|3231789_3234066_-\|hypothetical-protein	gnl\|CDD\|372320	pfam12805, FUSC-like, FUSC-like inner membrane protein yccS. This family has similarities to the fusaric acid resistance protein family. The proteins are lodged in the inner membrane.	5.92051e-82
NZ_CP009209.1\|WP_004521870.1\|3234908_3238253_+\|exodeoxyribonuclease-V-subunit-gamma	gnl\|CDD\|335690	pfam04257, Exonuc_V_gamma, Exodeoxyribonuclease V, gamma subunit. The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This family consists of two AAA domains.	0
NZ_CP009209.1\|WP_004543005.1\|3242058_3244755_+\|AAA-family-ATPase	gnl\|CDD\|236783	PRK10875, recD, exodeoxyribonuclease V subunit alpha.	2.03735e-72
NZ_CP009209.1\|WP_004543011.1\|3253877_3255002_+\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|226602	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion].	1.02141e-55
NZ_CP009209.1\|WP_004543008.1\|3238249_3242062_+\|exodeoxyribonuclease-V-subunit-beta	gnl\|CDD\|236784	PRK10876, recB, exonuclease V subunit beta; Provisional.	0
NZ_CP009209.1\|WP_004521865.1\|3250020_3251952_-\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NZ_CP009209.1\|WP_004195184.1\|3253062_3253887_+\|DUF1223-domain-containing-protein	gnl\|CDD\|369071	pfam06764, DUF1223, Protein of unknown function (DUF1223). This family consists of several hypothetical proteins of around 250 residues in length which are found in both plants and bacteria. The function of this family is unknown. Structurally it lies in the Thioredoxin-like superfamily.	3.14399e-68
NZ_CP009209.1\|WP_004192513.1\|3230240_3231605_-\|amino-acid-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NZ_CP009209.1\|WP_004193128.1\|3249584_3249797_-\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|182532	PRK10540, PRK10540, osmotically-inducible lipoprotein OsmB.	5.81885e-06

>NZ_CP009209.1|WP_041188564.1|3245557_3246841_-|EAL-domain-containing-protein
MPKTQGFSPESLISQFTRCDAGWCVRYHDVTLASAFQPVISITHKRVVGYEALARATDANGAPISPDTLFARAQARGETILLDRLTRCLHVANFAAQDTGACWLFLNVLPQMFDAGISPGAFIEALCAHFALPPTRVVLEVIEQPSRNEVALARTIDMIQHGDFLIAVDDFGTGFSNFDRIWQIKPDIVKLDRSILERSLAASDAHRIIHHLVTMLHHAGTMVLAEGVENEDALQILMDADVDFVQGFCFGRPAPSLEHARRAAPARIEAAWRRFAERTKARCGDVVHPGFDTIERIMLTGAADYAQTRNLRDAAQRLLTSPIVRRVFVAEANGEQVEPSVAIETPEAPSATARRLAPLLPELHCNWSRRAYFQRAIAAPGRVALMGPHFSLTDGRDCYTAAVAIHLGTTLKVFCVDFDFSSYGDGR
>NZ_CP009209.1|WP_004193488.1|3244751_3245156_+|aminoacyl-tRNA-hydrolase
MTLRYAFSPDEVELTAVRAQGAGGQNVNKVSSAIHLRFDIRASSLPDDVKARLFARADQRITREGVIVIKAQEYRTQEKNRAAALARLDTLIRSAGVTPRKRVATRPTRASKERRLAEKGRRSEVKSGRGRVVE
>NZ_CP009209.1|WP_004543005.1|3242058_3244755_+|AAA-family-ATPase
MSVVDERFAWTGGLADRLPEPADFGLALAEGFARRIGMLSRRVGASAAAARWAARAAFAASRATAAGHVCVALRALAQRYDEPYDDVRAALAASGVTAFDGIVRGGECPLVVDRDGRLYLARYFEYETRLANALVERSRCGGAPAGGADALSPDALGERLVRYFGPQKERGVDWQRVAALIALTGRVTIVSGGPGTGKTTTVVGVIACLLDAHPELRIALAAPTGKAAQRMQEALHARAGSLPAELAARLPRTSCTLHRLLGGGPGGRFAHHRDNPLPYDLVVVDEASMIDVALAAHLLDALAPNARLVLLGDKDQLAAVEAGAVFAELSARPAFSPATCATIARALGVGEAEFVAALPDGFVVQAAGAERVADARAAAADMDAAARGTAGAAAAAARATAAAAARMTTAAAAARGAAPESAAQRAPAPHAGRRGGGRASNRTVDDAQGSLFAFDDDAFGVGTSGGEPGAGAQGAGRRDGGAPSLDGPHAGHRDGGASPGVAHSRRDAFDARARSGPADVSDVENAARAYAPAGAAGPADSPADASFVEPAAWIEADELAWLDNAVFSFSEGASANAEADGRRSAAATATDAGARTAPPVAREATAPTPRETARSDGSAVAPLTDCVVWLERNYRFGLDSPIGRLSLAIRRGAVQDALDALSTQDDAAARFSDDGGATLSAATVEQLARGFAGYAAALRDALATPEPDALPLFDVLNRFRVLCATRTGARGAEEVNARMAAEVRRAVRVPLALGAHWFAGRPVMVTRNDYALGLFNGDIGIALPGARGALRVWFRGADGRARAVSPAALPPHDTAFALTVHKSQGSEFDDAALILPASFNRVLSRELVYTAITRARARVQVIGSRAVLALAIATRTARDSGLAARIADALRARQEGAR
>NZ_CP009209.1|WP_004543008.1|3238249_3242062_+|exodeoxyribonuclease-V-subunit-beta
MSHVAPSGPSASELDVFACPLDGVNQIEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALDTGDDGGDPFIARLFETTLAPERGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQEAPFAAAMPFAFEMEADDGVLRFELAADFWRTRVEPVAAAYPAFAEWLVEYGAGPAALDAQLARRLKKPLARLRWDGLHAADDGAESAARAHFDTAAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKLTQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRARWLSLVEQWLDAAPAELAQRKRTRRVVSFDDLLANLYRALDAHPWLRETLRARYPAALIDEFQDTDPLQFAIFDTIFAPAGPLFLVGDPKQAIYSFRAADLHTYLAARARASARYTLAVNQRSTPAIVGACNRVFGANPRAFVLDGLDYEPVRAGSRVRAPLVDATDPLAGAGDFRIWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGARERAVTLGGEPLAASGIAVLVQTHRQGSLVKRVLAAWGIGSVELAQASVFATIDAEQLERVLAAIDAPGDLRRLRSALASDWFGLDAAALWRLEQGDAEQDGIDAAARGASGNGGGARAASAGAPAPSPADADAMGWVERFSRYRLLWRERGFAVMWRTLAGELRIAERLMAGADGERRVTDVNHLAELTQARASAQPGIAPTLRWLAAQRLEGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLNDGGLREPAGSGLPDAREYHDESGCAVLHYGCDDEAAERASREAVREQAAERARLVYVALTRAVYRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQALAGGPVTLGALPVPAHREPLAAGHDAQATRAARRATRGLRDAWRIASFSSLASAIARDESGIARAADDEMRPDHDALAAALGADALEPPDAAAAIAPAPAAAPRELAEDDILAFPRGAAAGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAERLPAMMTRLVADLAATELVPGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAGFVKGFIDMIVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQALLYMVALHRYLRVRMRGYDYDAHIAGYLYVFVRGVRPDWRNGGASAGVHARRPARALIEALDALMREGDA
>NZ_CP009209.1|WP_004521870.1|3234908_3238253_+|exodeoxyribonuclease-V-subunit-gamma
MLHLFYSNRHETLADALLDDLAFASDGAGPWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLAQWLWAQIGEVLTVPAHSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTYRPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLREARAFDPDVIARARAKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDIVTAARAESLDAADRLDYQEVGHPLLAEWGRQTQAQLHMLHELTESAAASDASRYADNPAPTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPSLAPSDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPERDVGAPELVEWLRADAVAARYGIDATALETVQTWLAASGARRGLAPDAAEPPNPAVPAPRHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLARFTDDLDGFARRIARDLTPQGWGDVFADALARFFDSGPAFADALSGVRDALDAMLAAMAEGAAGAALPAAVVRAGLAAALDDPARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPSLARADEFDLMAVFAKLGDRQRRDDERNLFLDLLLAARERLLIAYTGRSIRDNAPLPPAALVDELLDHLAAASAGPDAPPDAVDAARRAFVIEHPLQPFSAEYFAPGGALFTYDASRATLARLLAEGARAQARPFFAAPLPAEPEQPVAFADFERFWRHPARSLLRARLGIVLLDAQAELVDTEPFELDYAGSDALAERVLPLLIETADAAAFEHALRVADASPEVPGGATGAVRRDHALDALAQLAGNVRRALADGATRVPFAFDVAPAWPAASDARWFGEHDAALAAAATREPLRLHGALARLTAAGQVIYRYARPGARDYLAAWLAHLVYCAIDPGGPRRTLWFGSGDTFEFAPVAAPLEQLAPLAALFRAGRRMPLAFFPRSAWALVSESESKAAGVWINDRVAGEADDASLALAWRGANPSLDEPFGALAHLVFDPLVEHLRRAS
>NZ_CP009209.1|WP_004534567.1|3231789_3234066_-|hypothetical-protein
MRYSVEIRKFFYSQYFFGGLRIALGVSLPAVLSLAVLHDRELGFTIATGALGACVVDMPGPLKYKHNEMLACSVIGFFSALATGLATPNIFALWLTIVPLTFALSLIVVYGNRWPQISFATLFMMVMTLEEKFTPLQALVNASWILAGGLWYTYWATIVSRWQARRIEQQALAESLFACASYLLARADFYDLDADLDECYRNLVARQITAVETQETARDIVLRNLPKLRRGKLDPGRTMMFNLFINSVDLHEMFVGAHTDYPLVRSTFGGSDLMIFYRDLIRKAAADLEEIGFAVLENRLPHSRISVKAELRAIEYEIELMRKKQFAATHPEAYAAVLATFRRIWSATRLIDKMRRNLSGSADAQRTELKIDKALTRFLQKRRMSPLLIFSNLNMGSPSLRHALRVTIAVAVGFWLGRLLPLTNAYWIVMTSIIILKPGYSLTKQRNAQRIVGTLIGCAASLALIYTVHEPHVLIAIMFGSMVMSYSLLLFNYAASVVFTSSYVLLLFHLLAPGNMRIIGERAIDTVVGCMIAIAASRLFPYWEYRAIGKLVADALATTRKYFEATWRAGRGKAAPAVPAADGAAAVPAVAAVVDAVAPGLDGDYQYRLARKNVHIAFANLGQAFQRMMLEPKAHQKFVPELNDLLVQTHVLGAQITAAAPLLRHACEQGNPPALERGMAAVREHLEQAEAGVPPPANQAETSKQLTRELDSMVVDAERSDAGADLAHDLKVLAHQCKQMLASSLLIRKDASVIRLPE
>NZ_CP009209.1|WP_004192878.1|3231601_3231793_-|hypothetical-protein
MSRPPPPFLSTVSRRARTQGFPDYCPRASIGMIYPAPSCLYNFSSASAGPHRPADDTNHSETR
>NZ_CP009209.1|WP_004192513.1|3230240_3231605_-|amino-acid-permease
MKNLQRHLSARHIRFLALGSAIGTGLFYGSASAIRLAGPAVILAYIVGGAAVYMVMRALGEMAVREPVPGSFGHYATENLGPFAGFVTGWTYTLEMVIVAIADITAFGIYMGFWFPHVPQWIWVLAIVAIICGLNLCHVKVFGELEFWLSIVKVGAIVAMIGGGAAILFTGMRLGSGGAPSLANLWSHGGFLPNGVGGLVASLSVVIFAYGGIEVIGMSAGEAKEPERVIPRAINAVPMRILLFYVLTMIVLMSIFPWTGVGANGSPFVQIFSALGVRSAAEILNLVVISAAISAINSDIFGAGRMMYAMALQGQAPRALAAMSARGVPWVTVLVMAGALLVGVVLNYLMPKDVFLMVAASATFATVWVWLMILLSQVAMRRRLGAAEVAALKFKVPFWPVGPALTIAFMAFVIAMLGYFDDTRVALFVGAAWLAILALVFYTRIRPRLAAVAR
>NZ_CP009209.1|WP_004193167.1|3229899_3230079_+|hypothetical-protein
MNDPRSKKNPVFGVAILIVVVIALVIGTILYNAISQKHEYDEAHPHAASAASAASAQHG
>NZ_CP009209.1|WP_004191162.1|3229783_3229903_+|hypothetical-protein
MRIARKKTDESRRAQRTAVRMRLRVECRLDEFLMERDRR
>NZ_CP009209.1|WP_004534949.1|3247905_3248838_-|DMT-family-transporter
MNLKNALLLIVLAALWGASFLFIRVGVAEFGVAPLMALRVGIGALFLVALMLTRYAPRELIALLRQHAWPLFVVGLLNSAAPFCLFAFAELTLSAGVTSVINATTPLWGALVAYLWLKDSLSLPRALGLVIGFAGVLTLVWDQVFSPHGANPASPATAALAAAAALGATLLYGIAANFTKRKLTGVDPLVSATGSMVGATILLLPFALATWPAAPVSAHAWGSVLALGIACTGVAYFIFFHLIAHIGPARAITVTFVIPVFGILWGALFLGERVSFAMLEGCVIVLLGTALATGAIRRIPGVRPQRNEAA
>NZ_CP009209.1|WP_004542975.1|3249108_3249333_-|hypothetical-protein
MNKTLVAAALASVALAGCYYPYGYYPASGYYAVPVQTAPVYVAPAYPAYYYPAPSLSLNFGYWSGGGRGYWRHH
>NZ_CP009209.1|WP_004193128.1|3249584_3249797_-|glycine-zipper-2TM-domain-containing-protein
MKSIRRIGVCAMLIATMASLSACDTMTTRQRNAAIGAGIGGVAGAAIGGNALSTIGGAAAGGLVGSQVGK
>NZ_CP009209.1|WP_004521865.1|3250020_3251952_-|phosphomethylpyrimidine-synthase-ThiC
MNANPKFLSADARVDAAAVAPLPNSRKVYVTGSQPDIRVPMREITQADTPTSFGGEKNPPIYVYDTSGPYTDPDAKIDIRAGLPALRQRWIDARGDTETLAGLTSDYGRERAADPATAELRFPGLHRHPRRAKAGKNVTQMHYARQGIITPEMEYIAIRENQRRAEYLESLKASGPNGAKLAAMMGRQHAGQAFGAAAFGANAPAEITPEFVRDEVARGRAIIPANINHPETEPMIIGRNFLVKINANIGNSAVTSSIGEEVDKMTWAIRWGGDTVMDLSTGKHIHETREWIIRNSPVPIGTVPIYQALEKVNGKAEDLTWEIFRDTLIEQAEQGVDYFTIHAGVRLQYVPLTANRMTGIVSRGGSIMAKWCLAHHKESFLYEHFEEICEIMKAYDVSFSLGDGLRPGSIYDANDEAQLGELKTLGELTQIAWKHDVQVMIEGPGHVPMQLIKENMDLQLDWCKEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWFGTAMLCYVTPKEHLGLPNKDDVKEGIITYKLAAHAADLAKGHPGAQVRDNALSKARFEFRWQDQFNLGLDPDKAREFHDETLPKDSAKVAHFCSMCGPHFCSMKITQDVREFAAQQGVSENDALKKGMEVKAVEFVKSGSEIYHRQ
>NZ_CP009209.1|WP_004193339.1|3252596_3252902_+|pentapeptide-MXKDX-repeat-protein
MKRNLIAFACVAGFALAAPFAHAQNDAMSKDGMGMSKDAMSKGAMSGDAMSKDAMSKDAMSKDRMGKRHDHMAKGGMKAGPMSKDAMKEPMSSDKMSPMSN
>NZ_CP009209.1|WP_004195184.1|3253062_3253887_+|DUF1223-domain-containing-protein
MSTDMSISFSVSLRAVAAALSLAAAGAAQAAADGACMARSPDGRQALVELYTSEGCSSCPPADDWLARLAARRAALRVVPLALHVDYWDGLGWADRFAQHRFTERQHALAARGGGRFVYTPEVAVDGRELRDWRDADAFGRRVVATAAEPARVGIALAAKRRAGALDVALSVTPRVGAPRALDAYLALYENGVESQVRAGENRGATLRHERVVRQWIGPLAATADAHASLDVRRALPLPANLRAADAARYGVAAFVEDPATGDVLQALDLPLCG
>NZ_CP009209.1|WP_004543011.1|3253877_3255002_+|cytochrome-b/b6-domain-containing-protein
MRLNDARAIDQRTRVSPMSATPTTSASTTAMAGARASGAADAPARAPTGADVDAGATAWADATANATANATTDPTIDATADATTDAMANVTTDAATRVTANPPIHETANVPASTAAAATTEAVADARTGTALDAAHPGATQTMSQTMAQTMTQAGTEAASPAGTDAAASGACITRATRARRPIHPLWVRASHWLNALAAVTMALSGWRIYNASPIYAGFVFPRGATLGGWLGGALQWHFAAMWLLFFNGVFYLTMGVATRRFTRKLLPLSASGVARDLRDALRGRLSHDDLSVYNALQRAAYVAAIADLALLVLSGLVIWKSVQFPLLREWFGGYDRARVVHFWAMAFLVAFFVVHVAMAALVPRSLLAMLRGH
>NZ_CP009209.1|WP_004542979.1|3255017_3255809_+|molybdopterin-dependent-oxidoreductase
MAENDRKKRENDIARIDRASLLIDVRKSLALPSRRLFGKRMLTLGGLAMLTGCTLRDDASADDFLEKVSRANDRVQAWLFGPTRLAPTYAEADITRPFPFNAFYGIDDVPRVDADGFRLAVSGLVTGQRSWSLPALYALPHAEQITRHICVEGWSAIGRWGGTPFREFLRRVGADTSAKYVGFKCADDYYESIDMATALHPQTLLAFEYDGKRLPPEYGFPMKLRMPTKLGYKNPKHIVEIFVTNAYPGGYWVDQGYNWFGGS
>NZ_CP009209.1|WP_160974052.1|3256032_3256245_+|hypothetical-protein
MLTKCGRHAAHVIIRVRLRVRSSPSVMFAAARSDLSFRTPPFPVIPVFPAPLAGGRIARRSTARRFTRAG
>NZ_CP009209.1|WP_004542991.1|3256248_3257184_+|EamA-family-transporter
MTPFDRFLAFVARHPPRLPQSRSGRVALALVFIYFAWGSTYLALHVALESFPPLLLSGLRNLLAGVGLFVFAMRRRPVRPTLVEIRNAALVGTMLVTMSSGLIALGMRTVSSGSAAVMVATVPLFATVIASVAGRRVTGGEWGAVALGMVGIVVLNSGGPSSPGSTLGSITVLAGALFWAGGAHLAARLALPHDLFLSTALQIGLGGAASTCIAWVLGERIGHVAWVPGAAFVYLMLAGTMAAYVAYGYLIRHTSPIIASSCMYVNPVVAVALGALLLGEPVTAATVIATIAILGSVGLSFVFDPARWRAQ

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

166552 : 174745

Burkholderia_virus(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004539691.1\|166552_167662_+	class II histone deacetylase	A0A2K9L2T7	Tupanvirus	1.6e-36	31.3
WP_004193371.1\|167856_168480_+	phospholipase D family protein	NA	NA	NA	NA
WP_004193710.1\|168606_168789_-	hypothetical protein	NA	NA	NA	NA
WP_004550288.1\|169727_170189_+	avidin	NA	NA	NA	NA
WP_004527234.1\|170264_170498_+	hypothetical protein	A4PE26	Ralstonia_virus	4.3e-13	60.6
WP_009919883.1\|170533_170761_-	hypothetical protein	Q8W6S4	Burkholderia_virus	4.2e-21	72.7
WP_009937072.1\|171012_171408_+	hypothetical protein	NA	NA	NA	NA
WP_004539795.1\|171688_172114_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	3.8e-15	49.4
WP_004539879.1\|172110_172617_+	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	1.3e-19	40.9
WP_009920998.1\|173566_174292_+	hypothetical protein	A4PE26	Ralstonia_virus	5.8e-32	44.0
WP_076839978.1\|174312_174498_-	hypothetical protein	Q8W6S4	Burkholderia_virus	5.8e-21	83.3
WP_004196630.1\|174481_174745_-	hypothetical protein	Q8W6S4	Burkholderia_virus	2.2e-26	85.5

DBSCAN-SWA_2

367896 : 436813

uncultured_Caudovirales_phage(27.03%)

integrase,plate,protease,tail,terminase,head,portal,tRNA,capsid

attL 409716:409733|attR 425856:425873

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004538130.1\|367896_369366_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_004193249.1\|369409_370381_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_004205123.1\|370484_371423_-	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA
WP_004192752.1\|371470_372868_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	1.8e-42	33.8
WP_004195907.1\|373099_373822_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_004191635.1\|373878_374454_+	peptidyl-prolyl cis-trans isomerase	A0A1V0SCU1	Indivirus	5.3e-12	39.3
WP_004193779.1\|374534_375026_+	peptidyl-prolyl cis-trans isomerase	A0A1V0SCU1	Indivirus	4.2e-10	33.3
WP_020850718.1\|375050_375851_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_004539737.1\|376186_376972_-	serine O-acetyltransferase	NA	NA	NA	NA
WP_004539789.1\|377162_378074_-	RNA methyltransferase	NA	NA	NA	NA
WP_004524745.1\|378079_378331_-	hypothetical protein	NA	NA	NA	NA
WP_004191664.1\|378374_379178_+	inositol monophosphatase	NA	NA	NA	NA
WP_004527347.1\|379446_379719_-	hypothetical protein	NA	NA	NA	NA
WP_004191077.1\|379902_380082_-	hypothetical protein	NA	NA	NA	NA
WP_004524743.1\|380626_380854_-	hypothetical protein	NA	NA	NA	NA
WP_004540097.1\|381330_383547_-	ATP-binding protein	NA	NA	NA	NA
WP_004539802.1\|383732_384308_-	PIN domain-containing protein	K4HZX4	Acidithiobacillus_phage	5.4e-73	70.4
WP_004540053.1\|384312_384774_-	excisionase family DNA-binding protein	K4ICM4	Acidithiobacillus_phage	6.7e-50	67.3
WP_133604798.1\|385426_385825_+	hypothetical protein	NA	NA	NA	NA
WP_004540114.1\|385821_386049_+	hypothetical protein	NA	NA	NA	NA
WP_020850431.1\|386508_386889_+	hypothetical protein	NA	NA	NA	NA
WP_004539640.1\|387286_387712_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	4.9e-15	49.4
WP_004539924.1\|387708_388215_+	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	5.1e-19	39.4
WP_020850500.1\|388207_388681_+	hypothetical protein	NA	NA	NA	NA
WP_038732294.1\|388652_389168_+	hypothetical protein	NA	NA	NA	NA
WP_004539736.1\|389179_389890_+	hypothetical protein	A4PE26	Ralstonia_virus	1.4e-38	41.5
WP_004540080.1\|389930_390719_-	DNA adenine methylase	Q8W6S4	Burkholderia_virus	6.1e-152	97.7
WP_004539940.1\|390862_391408_-	lysozyme	Q8W6S5	Burkholderia_virus	6.4e-84	96.7
WP_004539628.1\|391407_391905_-	lysozyme	A4JX20	Burkholderia_virus	2.2e-67	78.2
WP_004533694.1\|391897_392092_-	hypothetical protein	NA	NA	NA	NA
WP_004539808.1\|392167_393220_-	phage late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	1.7e-77	44.5
WP_004540041.1\|393229_393436_-\|tail	phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	4.0e-15	61.2
WP_004539752.1\|393410_394292_-\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	3.9e-30	37.4
WP_004539677.1\|394300_396715_-\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	6.4e-67	34.3
WP_004533642.1\|396802_397105_-\|tail	phage tail assembly protein	V5YST8	Pseudomonas_phage	1.5e-05	37.2
WP_004540135.1\|397174_397678_-\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	1.6e-41	50.6
WP_004539720.1\|397688_398858_-\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	6.9e-160	72.9
WP_004539865.1\|398923_399376_-\|tail	tail assembly chaperone	A4JWL9	Burkholderia_virus	1.8e-44	76.8
WP_004539647.1\|399391_400855_-	hypothetical protein	A4JWL8	Burkholderia_virus	8.0e-214	77.8
WP_004539949.1\|400842_401418_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.0e-32	47.7
WP_004533630.1\|401410_402304_-\|plate	baseplate J protein	D5LGZ3	Escherichia_phage	1.9e-48	40.7
WP_004539881.1\|402300_402645_-	hypothetical protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.0e-23	50.0
WP_004539700.1\|402641_402848_-	hypothetical protein	NA	NA	NA	NA
WP_004539840.1\|402912_403593_-\|plate	phage baseplate assembly protein V	A0A1B2LRU5	Wolbachia_phage	1.2e-18	34.4
WP_020850797.1\|403595_404129_-	hypothetical protein	Q9JML9	Wolbachia_phage	1.4e-22	39.5
WP_004539763.1\|404118_404649_-\|tail	phage tail protein	A0A2H4JBV1	uncultured_Caudovirales_phage	9.2e-11	28.0
WP_004539695.1\|404650_404941_-	hypothetical protein	NA	NA	NA	NA
WP_080002857.1\|404944_405970_-\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	8.3e-109	58.8
WP_004539732.1\|406004_406349_-\|head	head decoration protein	NA	NA	NA	NA
WP_004540078.1\|406375_407455_-\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	1.6e-46	37.1
WP_020850457.1\|407451_408945_-\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	4.4e-135	51.2
WP_004533700.1\|408941_409148_-	hypothetical protein	NA	NA	NA	NA
WP_004552756.1\|409158_411144_-\|terminase	phage terminase large subunit family protein	A0A2D1GMT1	Marinobacter_phage	2.1e-180	53.4
409716:409733	attL	NA	NA	NA	NA
WP_020850524.1\|411106_411676_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_041188588.1\|412042_412417_-	hypothetical protein	NA	NA	NA	NA
WP_020850498.1\|412764_413352_-	hypothetical protein	NA	NA	NA	NA
WP_004540079.1\|413561_416054_-	virulence protein E	A0A2D1GN57	Marinobacter_phage	3.6e-97	41.8
WP_004539945.1\|416173_416644_-	hypothetical protein	NA	NA	NA	NA
WP_024464805.1\|416950_417304_-	hypothetical protein	NA	NA	NA	NA
WP_009944042.1\|417317_417848_-	hypothetical protein	C7BGG0	Burkholderia_phage	4.4e-29	46.8
WP_024430958.1\|417934_418144_-	hypothetical protein	NA	NA	NA	NA
WP_004555254.1\|418260_418761_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004555253.1\|418714_419203_+	hypothetical protein	NA	NA	NA	NA
WP_128972336.1\|419337_419526_+	NlpBDapX lipoprotein	NA	NA	NA	NA
WP_004539634.1\|419577_419913_+	hypothetical protein	NA	NA	NA	NA
WP_004534172.1\|419909_420515_+	hypothetical protein	NA	NA	NA	NA
WP_004539832.1\|420511_420961_+	hypothetical protein	NA	NA	NA	NA
WP_004540046.1\|420960_422277_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_004555250.1\|422390_422720_+	hypothetical protein	NA	NA	NA	NA
WP_004539932.1\|422728_423202_+	hypothetical protein	B5TA88	Burkholderia_phage	2.3e-05	71.4
WP_009890227.1\|423210_423453_+	AlpA family phage regulatory protein	C7BGF0	Burkholderia_phage	9.3e-19	59.2
WP_004539636.1\|423403_424705_-\|integrase	integrase family protein	C7BGE7	Burkholderia_phage	1.8e-148	58.9
WP_004539925.1\|424864_427549_+	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	9.3e-27	24.3
425856:425873	attR	NA	NA	NA	NA
WP_004540138.1\|427535_428834_+	hypothetical protein	NA	NA	NA	NA
WP_004524740.1\|428813_429359_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_004539920.1\|429427_430615_+	cupin domain-containing protein	NA	NA	NA	NA
WP_004193059.1\|431341_432118_-	MBL fold metallo-hydrolase	U5PVD0	Bacillus_phage	3.3e-09	26.6
WP_004524737.1\|432122_433265_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_004191516.1\|433375_434278_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_004192474.1\|434322_434940_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_004191887.1\|434936_436139_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_004192745.1\|436147_436813_-\|protease	site-2 protease family protein	NA	NA	NA	NA

DBSCAN-SWA_3

610925 : 690162

Burkholderia_virus(30.3%)

integrase,protease,tail,terminase,head,portal,holin

attL 660811:660828|attR 683600:683617

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004191603.1\|610925_613028_+\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA
WP_004191212.1\|613861_615010_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004524631.1\|615108_616281_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_004204640.1\|616430_616892_-	DUF2214 family protein	NA	NA	NA	NA
WP_004535747.1\|616947_617919_-	hypothetical protein	NA	NA	NA	NA
WP_004192961.1\|618185_619250_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_004539709.1\|619816_621688_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	3.7e-38	27.1
WP_004203013.1\|621749_623126_-	alpha,alpha-trehalose-phosphate synthase (UDP-forming)	NA	NA	NA	NA
WP_004550148.1\|623122_623875_-	trehalose-phosphatase	NA	NA	NA	NA
WP_076847727.1\|623864_624086_+	hypothetical protein	NA	NA	NA	NA
WP_020850745.1\|624291_624951_+	SCO family protein	NA	NA	NA	NA
WP_004192175.1\|624977_625424_+	copper chaperone PCu(A)C	NA	NA	NA	NA
WP_004191283.1\|625434_626307_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_004554230.1\|626441_626945_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_004191946.1\|627186_628053_-	pirin family protein	NA	NA	NA	NA
WP_004197652.1\|628179_629088_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004193834.1\|629252_629765_+	GAF domain-containing protein	NA	NA	NA	NA
WP_158332260.1\|631020_631083_-	hypothetical protein	NA	NA	NA	NA
WP_004539946.1\|631227_632169_+	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_144084165.1\|632209_632713_-	DUF159 family protein	A0A1S5NTJ1	Burkholderia_phage	8.3e-70	85.8
WP_041188619.1\|632677_632938_+	hypothetical protein	C7BGE3	Burkholderia_phage	2.8e-37	83.7
WP_004539830.1\|632975_633365_+	hypothetical protein	NA	NA	NA	NA
WP_004540087.1\|633471_634359_-	hypothetical protein	Q8W6S3	Burkholderia_virus	2.1e-92	64.1
WP_004539787.1\|634469_635258_-	DNA adenine methylase	Q8W6S4	Burkholderia_virus	6.1e-144	90.5
WP_004540004.1\|635425_635920_-	DUF2514 family protein	Q6J1Q4	Burkholderia_virus	6.7e-32	54.5
WP_020850783.1\|635916_636411_-	glycoside hydrolase family 104 protein	Q6J1Q5	Burkholderia_virus	6.9e-69	79.9
WP_004539903.1\|636413_636698_-\|holin	holin	C7BGD7	Burkholderia_phage	4.7e-38	90.4
WP_020850642.1\|636755_637493_-	hypothetical protein	Q8W6S8	Burkholderia_virus	2.8e-98	68.0
WP_020850420.1\|637492_637798_-	hypothetical protein	Q8W6S9	Burkholderia_virus	1.6e-39	73.5
WP_004540110.1\|637797_641169_-	host specificity protein J	A4JX16	Burkholderia_virus	2.8e-302	48.3
WP_004539859.1\|641165_641747_-\|tail	tail assembly protein	Q3HQU4	Burkholderia_phage	6.9e-52	55.7
WP_004539701.1\|641743_642475_-	C40 family peptidase	Q8W6T2	Burkholderia_virus	1.3e-63	50.4
WP_004539780.1\|642479_643172_-\|tail	phage minor tail protein L	Q6JIL5	Burkholderia_virus	2.9e-81	65.0
WP_020850804.1\|643168_644572_-\|tail	tail fiber domain-containing protein	Q8W6T4	Burkholderia_virus	3.0e-194	75.9
WP_076847725.1\|644573_644912_-\|tail	phage tail protein	K7PHL4	Enterobacterial_phage	2.4e-17	42.3
WP_004539854.1\|644901_647682_-\|tail	tail tape measure protein	C4ML16	Xanthomonas_virus	1.3e-18	26.1
WP_043944506.1\|647726_648032_-	hypothetical protein	A0A0H5ARS5	Pseudomonas_phage	7.6e-10	44.3
WP_004540052.1\|648103_648442_-	hypothetical protein	F4YCS5	Synechococcus_phage	1.8e-07	29.1
WP_020850716.1\|648500_649439_-	hypothetical protein	G8CLB2	Synechococcus_phage	9.7e-48	36.8
WP_004539916.1\|649469_649895_-	hypothetical protein	NA	NA	NA	NA
WP_004539750.1\|649891_650188_-	hypothetical protein	NA	NA	NA	NA
WP_004540064.1\|650190_650526_-	DUF2190 family protein	NA	NA	NA	NA
WP_020850433.1\|650591_652670_-\|head,protease	caudovirus prohead protease family protein	A0A076G7Y9	Pseudoalteromonas_phage	1.9e-67	29.8
WP_004539741.1\|652659_654183_-\|portal	phage portal protein	B7SYD6	Stenotrophomonas_phage	1.2e-84	38.6
WP_004540003.1\|654184_654391_-	hypothetical protein	A0A2H4JA19	uncultured_Caudovirales_phage	6.5e-05	46.8
WP_020850857.1\|654393_656463_-\|terminase	phage terminase large subunit family protein	A0A1B2LRQ2	Wolbachia_phage	1.3e-100	34.0
WP_020850831.1\|656410_657040_-	hypothetical protein	A0A2H4JCL4	uncultured_Caudovirales_phage	1.6e-06	32.3
WP_004539817.1\|657221_657980_-	hypothetical protein	A0A1B0Z000	Pseudomonas_phage	5.0e-34	42.7
WP_076847724.1\|658198_658996_-	hypothetical protein	NA	NA	NA	NA
WP_004539611.1\|659275_662014_-	virulence protein E	A0A2D1GN57	Marinobacter_phage	1.1e-91	43.3
660811:660828	attL	NA	NA	NA	NA
WP_004540057.1\|662168_662561_-	hypothetical protein	NA	NA	NA	NA
WP_020850469.1\|662569_663094_-	hypothetical protein	C7BGG0	Burkholderia_phage	6.2e-28	45.0
WP_004539980.1\|663168_663375_-	hypothetical protein	NA	NA	NA	NA
WP_020850435.1\|663468_663996_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020850728.1\|664562_664778_+	hypothetical protein	NA	NA	NA	NA
WP_004539642.1\|664780_664933_+	hypothetical protein	NA	NA	NA	NA
WP_020850499.1\|664940_665150_+	hypothetical protein	NA	NA	NA	NA
WP_004539947.1\|665154_665514_+	hypothetical protein	NA	NA	NA	NA
WP_004539952.1\|665510_665957_+	hypothetical protein	NA	NA	NA	NA
WP_004539721.1\|665956_667273_+	hypothetical protein	NA	NA	NA	NA
WP_076847822.1\|667374_667713_+	hypothetical protein	NA	NA	NA	NA
WP_041188621.1\|668992_669337_+	hypothetical protein	X5I2N5	Pseudomonas_phage	6.7e-31	71.0
WP_020850651.1\|669333_669594_+	hypothetical protein	NA	NA	NA	NA
WP_004539756.1\|669590_669917_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_080002859.1\|669960_670908_+	conjugal transfer protein TraN	NA	NA	NA	NA
WP_004539938.1\|670924_672124_-\|integrase	site-specific integrase	A0A1L7DQ84	Ralstonia_phage	7.9e-18	34.7
WP_004192722.1\|672887_673481_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_004527460.1\|673608_675852_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_004540031.1\|676075_677296_+	elongation factor P maturation arginine rhamnosyltransferase EarP	NA	NA	NA	NA
WP_004193484.1\|677485_678043_+	elongation factor P	NA	NA	NA	NA
WP_004192300.1\|678314_679712_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_004539664.1\|679825_680854_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA
WP_004191194.1\|680881_681313_-	holo-ACP synthase	NA	NA	NA	NA
WP_004192885.1\|681318_682092_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_004524618.1\|682088_682916_-	DNA repair protein RecO	NA	NA	NA	NA
WP_004191678.1\|682935_683835_-	GTPase Era	NA	NA	NA	NA
683600:683617	attR	NA	NA	NA	NA
WP_004539775.1\|683904_685308_-	ribonuclease III	G8DDA3	Micromonas_pusilla_virus	4.9e-19	30.3
WP_004193513.1\|685458_686352_-	signal peptidase I	NA	NA	NA	NA
WP_004193305.1\|686367_688161_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	2.1e-22	23.5
WP_004527467.1\|688152_688395_+	hypothetical protein	NA	NA	NA	NA
WP_004539792.1\|688402_688657_-	glutaredoxin family protein	NA	NA	NA	NA
WP_004192020.1\|688653_690162_-\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	2.8e-20	27.7

DBSCAN-SWA_4

765334 : 774149

Tanapox_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041188594.1\|765334_766177_+	alpha/beta hydrolase	A7XCB7	Tanapox_virus	7.2e-18	27.0
WP_004522362.1\|766515_767439_-	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	2.4e-43	36.2
WP_004539874.1\|767617_768901_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_004532363.1\|769127_770030_-	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	1.9e-53	39.9
WP_004539941.1\|770353_770671_-	competence protein ComE	NA	NA	NA	NA
WP_004190173.1\|770742_771735_-	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	9.1e-28	30.9
WP_009921652.1\|771793_772717_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.3e-15	27.1
WP_004522358.1\|772748_774149_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.9e-79	38.5

DBSCAN-SWA_5

1112464 : 1121709

unidentified_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004541275.1\|1112464_1114012_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	1.2e-23	30.9
WP_004194373.1\|1114048_1114576_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_004532195.1\|1114572_1115256_+	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	2.0e-05	26.0
WP_004194137.1\|1115320_1116136_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	8.8e-37	33.3
WP_004541188.1\|1116319_1118326_-	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	4.8e-52	34.6
WP_004533593.1\|1118359_1119490_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	3.8e-22	27.6
WP_004194034.1\|1119756_1121709_-	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	2.7e-148	49.2

DBSCAN-SWA_6

1427029 : 1484929

Burkholderia_phage(36.36%)

tRNA,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004521984.1\|1427029_1428328_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_004527811.1\|1428394_1429477_+	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	6.7e-08	46.6
WP_004534980.1\|1429520_1430378_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_004186955.1\|1430457_1430766_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_004521981.1\|1430780_1431377_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_004542691.1\|1431660_1432449_+	dioxygenase	NA	NA	NA	NA
WP_004527813.1\|1432861_1434463_-	APC family permease	NA	NA	NA	NA
WP_004196837.1\|1434896_1435100_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.3e-21	73.1
WP_004198058.1\|1435286_1436549_-	Hsp70 family protein	NA	NA	NA	NA
WP_004198059.1\|1437193_1437799_-	nitroreductase family protein	NA	NA	NA	NA
WP_076847809.1\|1437760_1438336_+	restriction endonuclease subunit R	NA	NA	NA	NA
WP_004198061.1\|1438295_1439579_-	MFS transporter	NA	NA	NA	NA
WP_004542718.1\|1439737_1440382_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_004527819.1\|1440719_1441343_+	DUF1415 domain-containing protein	NA	NA	NA	NA
WP_004198065.1\|1441427_1442324_-	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_004542673.1\|1442451_1443588_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_161956501.1\|1443564_1443870_+	aromatic ring-opening dioxygenase LigA	NA	NA	NA	NA
WP_004542675.1\|1443944_1445063_-	acyltransferase	NA	NA	NA	NA
WP_004542724.1\|1445061_1445541_+	hypothetical protein	NA	NA	NA	NA
WP_004199982.1\|1445500_1446004_-	lipoprotein	NA	NA	NA	NA
WP_017881272.1\|1446607_1448764_+	peptidase M1	A0A0P0IY26	Acinetobacter_phage	1.9e-46	27.1
WP_076830138.1\|1449345_1449744_+	hypothetical protein	NA	NA	NA	NA
WP_004185238.1\|1449819_1450056_+	hypothetical protein	NA	NA	NA	NA
WP_004204906.1\|1450158_1450389_+	hypothetical protein	NA	NA	NA	NA
WP_009974237.1\|1450622_1450979_-	hypothetical protein	NA	NA	NA	NA
WP_004542659.1\|1451004_1452273_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004542672.1\|1452287_1454549_+	peptidase domain-containing ABC transporter	A0A2R8FG22	Brazilian_cedratvirus	2.3e-10	31.9
WP_020850695.1\|1454545_1455994_+	TolC family protein	NA	NA	NA	NA
WP_004542717.1\|1456203_1457172_-	hypothetical protein	NA	NA	NA	NA
WP_004199998.1\|1457297_1458149_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_020850564.1\|1458427_1462321_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004200003.1\|1462317_1463307_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_004542676.1\|1463311_1464250_+	OmpA family protein	NA	NA	NA	NA
WP_004527835.1\|1464476_1465598_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_004521956.1\|1465687_1468357_-	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	1.7e-89	32.1
WP_004200010.1\|1468390_1469491_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004527836.1\|1469454_1471293_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004204912.1\|1471372_1471855_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004527837.1\|1471912_1472416_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004521953.1\|1472488_1473979_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004521952.1\|1473995_1474514_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004531875.1\|1474550_1475222_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_004521950.1\|1475596_1476211_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004521949.1\|1476319_1477666_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004521948.1\|1477662_1478448_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004542688.1\|1478549_1478915_+	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	5.1e-53	89.3
WP_111952238.1\|1479018_1479609_-	hypothetical protein	NA	NA	NA	NA
WP_020850622.1\|1480002_1480485_-	DNA methylase	K4NZW3	Burkholderia_phage	4.5e-73	87.6
WP_004542714.1\|1480502_1480916_-\|tail	phage tail protein I	K4NXA0	Burkholderia_phage	1.5e-69	99.2
WP_004542696.1\|1480908_1481235_-\|plate	baseplate J-like protein, truncation	K4NZR5	Burkholderia_phage	1.3e-52	100.0
WP_020850538.1\|1482077_1483139_-	macro domain-containing protein	B3FJ30	Pseudomonas_phage	3.1e-18	36.5
WP_076847807.1\|1483153_1483792_-	DUF4433 domain-containing protein	NA	NA	NA	NA
WP_076847687.1\|1484086_1484929_+	phage Gp37/Gp68 family protein	Q8W6R4	Burkholderia_virus	2.9e-67	43.3

DBSCAN-SWA_7

1742193 : 1753412

Burkholderia_phage(20.0%)

integrase

attL 1739397:1739414|attR 1755983:1756000

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1739397:1739414	attL	NA	NA	NA	NA
WP_004195754.1\|1742193_1742838_-	chitin-binding protein	A0A0K1Y848	Apis_mellifera_filamentous_virus	5.7e-07	30.4
WP_004525721.1\|1743728_1743977_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	4.0e-41	97.6
WP_004525722.1\|1744133_1745213_-	DUF3396 domain-containing protein	A9YX32	Burkholderia_phage	2.2e-160	99.0
WP_009932249.1\|1745212_1745665_-	VRR-NUC domain-containing protein	Q8W6S1	Burkholderia_virus	2.3e-31	58.8
WP_009922654.1\|1745922_1746465_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	3.3e-48	56.4
WP_004541800.1\|1746718_1747636_-	DUF4935 domain-containing protein	A4PE40	Ralstonia_virus	8.9e-46	40.6
WP_009922658.1\|1747635_1747953_-	helix-turn-helix transcriptional regulator	A0A088CD40	Shigella_phage	6.2e-15	57.0
WP_009932253.1\|1747960_1748281_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	1.0e-12	58.6
WP_041188602.1\|1748332_1748920_-\|integrase	site-specific integrase	A0A0S2SYQ7	Pseudomonas_phage	3.1e-44	50.6
WP_004202928.1\|1750102_1751002_+	cytochrome c	NA	NA	NA	NA
WP_004524472.1\|1751324_1753412_-	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	1.9e-99	35.8
1755983:1756000	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1967914 : 2033162

Vibrio_phage(12.5%)

tRNA,protease,portal,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004543108.1\|1967914_1969006_+\|portal	phage portal protein	A4JWQ2	Burkholderia_virus	2.2e-192	91.7
WP_004523107.1\|1969078_1969363_-	hypothetical protein	NA	NA	NA	NA
WP_004200731.1\|1969359_1969842_-	DUF2778 domain-containing protein	NA	NA	NA	NA
WP_004200732.1\|1972255_1972660_+	PaaI family thioesterase	NA	NA	NA	NA
WP_004543112.1\|1972697_1973567_+	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_004523104.1\|1973687_1974704_-	D-2-hydroxyacid dehydrogenase family protein	NA	NA	NA	NA
WP_004189230.1\|1975142_1976198_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004523103.1\|1976421_1979031_-	DNA topoisomerase III	A0A2P1ELA0	Moumouvirus	7.7e-18	25.7
WP_004190199.1\|1979241_1979613_-	thioredoxin family protein	NA	NA	NA	NA
WP_020850823.1\|1979672_1980863_-	DNA-protecting protein DprA	S6BFL3	Thermus_phage	2.0e-21	39.2
WP_004525852.1\|1981091_1981595_+	peptide deformylase	A0A067XQZ3	Caulobacter_phage	2.1e-12	34.3
WP_004543102.1\|1981626_1982610_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	1.3e-07	38.0
WP_004543107.1\|1982730_1983366_+	LysE family translocator	NA	NA	NA	NA
WP_004189409.1\|1983475_1984333_+\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
WP_020850535.1\|1984892_1986302_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_004543101.1\|1986298_1986889_+	DUF4390 domain-containing protein	NA	NA	NA	NA
WP_004523096.1\|1986890_1989299_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_004189647.1\|1989299_1989983_+	response regulator	NA	NA	NA	NA
WP_004190026.1\|1990450_1991185_+	7-cyano-7-deazaguanine synthase QueC	A0A1B0Z0B4	Vibrio_phage	1.6e-50	42.5
WP_004189241.1\|1991278_1991911_+	7-carboxy-7-deazaguanine synthase	R4TAH8	Halovirus	2.1e-06	30.9
WP_004189793.1\|1991930_1992383_+	6-carboxytetrahydropterin synthase QueD	A0A088FAL2	Vibrio_phage	7.6e-14	30.8
WP_004189570.1\|1992807_1993593_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA
WP_004543106.1\|1993589_1994366_+	sel1 repeat family protein	NA	NA	NA	NA
WP_004189171.1\|1994680_1995829_-	rod shape-determining protein RodA	NA	NA	NA	NA
WP_004543095.1\|1995840_1998252_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_004523092.1\|1998435_1998948_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_004189331.1\|1998944_2000018_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_004189550.1\|2000137_2001181_-	rod shape-determining protein	NA	NA	NA	NA
WP_004189769.1\|2001546_2001846_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_004525859.1\|2001958_2003449_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_004523090.1\|2003451_2004924_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_004523089.1\|2005050_2005890_+	polyphosphate kinase	NA	NA	NA	NA
WP_004190029.1\|2005922_2006693_+	exodeoxyribonuclease III	R4TWA8	Phaeocystis_globosa_virus	3.4e-30	33.8
WP_038802218.1\|2006853_2008263_+\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	8.5e-80	38.6
WP_004523088.1\|2008590_2009655_-	NAD(P)-dependent alcohol dehydrogenase	A0A2K9L339	Tupanvirus	1.3e-80	45.8
WP_004525862.1\|2009866_2010811_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_004535313.1\|2011183_2012236_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_004523086.1\|2012225_2013539_-	AmpG family muropeptide MFS transporter	NA	NA	NA	NA
WP_004543091.1\|2013550_2014165_-	methionine biosynthesis protein MetW	NA	NA	NA	NA
WP_004198305.1\|2014161_2015307_-	homoserine O-acetyltransferase	NA	NA	NA	NA
WP_004525865.1\|2015656_2016349_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA
WP_004198307.1\|2016315_2017119_-	pyrimidine 5'-nucleotidase	NA	NA	NA	NA
WP_004200214.1\|2017115_2018015_-	acetylglutamate kinase	NA	NA	NA	NA
WP_004198312.1\|2018339_2018591_+	cysteine-rich CWC family protein	NA	NA	NA	NA
WP_004198314.1\|2018608_2019889_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_004198315.1\|2019908_2020451_+	response regulator transcription factor	NA	NA	NA	NA
WP_004198316.1\|2020877_2022221_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	3.7e-40	28.8
WP_004203414.1\|2022230_2022767_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_004198318.1\|2023021_2023438_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA
WP_009972676.1\|2023987_2025073_-	GTP-binding protein	NA	NA	NA	NA
WP_004542863.1\|2025250_2026528_-	class I SAM-dependent rRNA methyltransferase	NA	NA	NA	NA
WP_004523080.1\|2026616_2027549_-	tyrosine recombinase XerC	G1JX48	Mycobacterium_phage	2.4e-14	28.0
WP_020850774.1\|2027586_2028300_-	DUF484 family protein	NA	NA	NA	NA
WP_004199067.1\|2028347_2029217_-	diaminopimelate epimerase	NA	NA	NA	NA
WP_004523078.1\|2029257_2030142_-	lipid A biosynthesis lauroyl acyltransferase	A0A1W6JP29	Morganella_phage	7.3e-29	30.1
WP_004199069.1\|2030407_2031595_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.2e-121	60.7
WP_144399859.1\|2031699_2033162_-\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	1.2e-79	38.3

DBSCAN-SWA_9

2788259 : 2799216

Streptococcus_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004197486.1\|2788259_2790374_-	elongation factor G	E4ZFJ7	Streptococcus_phage	5.8e-56	26.7
WP_004530837.1\|2790674_2791184_-	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	5.5e-13	41.2
WP_071810810.1\|2791375_2791594_-	hypothetical protein	NA	NA	NA	NA
WP_004189780.1\|2791855_2792434_-	pseudouridine synthase	NA	NA	NA	NA
WP_004189552.1\|2792701_2793961_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	5.2e-12	63.0
WP_004189626.1\|2793933_2794116_-	hypothetical protein	NA	NA	NA	NA
WP_004541727.1\|2794128_2795739_+	multicopper oxidase family protein	NA	NA	NA	NA
WP_004196460.1\|2795868_2796072_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_004194131.1\|2796604_2796919_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	4.4e-13	44.6
WP_004196461.1\|2796915_2799216_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	42.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009210

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009210_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009210_1

629575-629737

Orphan

Consensus_repeat	Method
CACGACAGCACGACAGCACGACAGCAC	CRISPRCasFinder

2 spacers

csa3

The CRISPR arrays of NZ_CP009210_1

>merge|NZ_CP009210|1|629575-629737|CRISPRCasFinder
CACGAACACACGAACACGCGACCGCACGCCCACGCGCACACCCGACCACGCAATCGAGCAATCGAGCAATCGAGCAATCGAGCAATCGAGCAATCACACGACAGCACGACAGCACGACAGCACGACAGCACGACAGCACGACAGCACGACAGCACGACAGCAC

>NZ_CP009210|1|1|629575-629737|CRISPRCasFinder
CACGAACACACGAACACGCGACCGCAC	GCCCACGCGCACACCCGACCACGCAATCGAGCAATCGAGCAATCGAGCAATCGAGCAATCG
AGCAATCACACGACAGCACGACAGCAC	GACAGCACGACAGCACGACAG
CACGACAGCACGACAGCACGACAGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009210.1\|WP_004540184.1\|627220_627619_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009210.1\|WP_004266659.1\|636433_636985_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009210.1\|WP_004190287.1\|632334_633183_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP009210.1\|WP_004190530.1\|641485_641776_-\|H-NS-histone-family-protein	unknown	unknown	gnl\|CDD\|376390
NZ_CP009210.1\|WP_162473166.1\|640485_641379_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009210.1\|WP_004200624.1\|641878_642058_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009210.1\|WP_020850371.1\|622063_622369_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009210.1\|WP_004524797.1\|619472_620810_-\|D-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|235096
NZ_CP009210.1\|WP_004533130.1\|631034_632177_+\|alpha-hydroxy-acid-oxidizing-protein	unknown	unknown	gnl\|CDD\|376451
NZ_CP009210.1\|WP_004537427.1\|624319_625561_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP009210.1\|WP_004540450.1\|618307_619222_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP009210.1\|WP_004540546.1\|625607_626729_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029
NZ_CP009210.1\|WP_004524788.1\|628071_629406_+\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_CP009210.1\|WP_004190404.1\|633721_634546_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP009210.1\|WP_020850092.1\|634844_636248_+\|indoleacetamide-hydrolase	unknown	unknown	gnl\|CDD\|236030
NZ_CP009210.1\|WP_004540372.1\|637580_639944_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|131764
NZ_CP009210.1\|WP_004540502.1\|620906_621848_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP009210.1\|WP_004190485.1\|630046_630970_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP009210.1\|WP_004537687.1\|622827_623502_-\|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238089
NZ_CP009210.1\|WP_004540436.1\|623574_624315_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293810

Protein	Function_ID	Function_description	E-value
NZ_CP009210.1\|WP_004190287.1\|632334_633183_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.00291e-102
NZ_CP009210.1\|WP_004190530.1\|641485_641776_-\|H-NS-histone-family-protein	gnl\|CDD\|376390	pfam00816, Histone_HNS, H-NS histone family.	5.135e-20
NZ_CP009210.1\|WP_004524797.1\|619472_620810_-\|D-serine-ammonia-lyase	gnl\|CDD\|235096	PRK02991, PRK02991, D-serine dehydratase; Provisional.	0
NZ_CP009210.1\|WP_004533130.1\|631034_632177_+\|alpha-hydroxy-acid-oxidizing-protein	gnl\|CDD\|376451	pfam01070, FMN_dh, FMN-dependent dehydrogenase.	3.69274e-171
NZ_CP009210.1\|WP_004537427.1\|624319_625561_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.56149e-43
NZ_CP009210.1\|WP_004540450.1\|618307_619222_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	2.58941e-89
NZ_CP009210.1\|WP_004540546.1\|625607_626729_+\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	3.12733e-166
NZ_CP009210.1\|WP_004537687.1\|622827_623502_-\|metalloregulator-ArsR/SmtB-family-transcription-factor	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	4.56369e-23
NZ_CP009210.1\|WP_004190404.1\|633721_634546_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	7.35336e-44
NZ_CP009210.1\|WP_020850092.1\|634844_636248_+\|indoleacetamide-hydrolase	gnl\|CDD\|236030	PRK07488, PRK07488, indoleacetamide hydrolase.	0
NZ_CP009210.1\|WP_004540372.1\|637580_639944_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|131764	TIGR02717, Uncharacterized_protein_MJ0590, acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.	3.2039e-92
NZ_CP009210.1\|WP_004540502.1\|620906_621848_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	2.40256e-75
NZ_CP009210.1\|WP_004190485.1\|630046_630970_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	6.62225e-57
NZ_CP009210.1\|WP_004524788.1\|628071_629406_+\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.12376e-146
NZ_CP009210.1\|WP_004540436.1\|623574_624315_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293810	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain. Persulfide dioxygenase (PDO, also known as sulfur dioxygenase, SDO, EC 1.13.11.18) is a non-heme iron-dependent oxygenase which catalyzes the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria. Mutations in ethe1 (the human PDO gene) are responsible for a rare autosomal recessive metabolic disorder called ethylmalonic encephalopathy. Arabidopsis thaliana ETHE1 is essential for embryo and endosperm development. Bacterial ETHE1-type PDOs are also called Type 1 PDOs. Type II PDOs (also called PDOAs), are mainly proteobacterial. These enzymes belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.22709e-63

>NZ_CP009210.1|WP_004524788.1|628071_629406_+|MHS-family-MFS-transporter
MPTPTPGTPRPPRTPQPVRAALAAFIGTTVEFYDYYTYATAAALVLGDVFFPSDNPFVSTMASFATFFVGFVARPLSGAVFGHLGDRIGRKKMLVLTMFLMGAATTGIGLLPGYATIGVWAPVLLVLLRILQGIAVGGEWGGAVLMASEHASAGRRTLFASFPQMGSPAGLILSLLAFRYVTSLDHARFVAWGWRLPFLASFVLLLIGVAVRLGVNESPEFERVRDSHAVARFPVAEVLRTAWYPIVLAAAATTIGSAGFFFTNTFMISYVTTYLGMSKSFILDCLFAVTLIQLLSQPVSALLAQRFGETRFLVCAALLSMLTPYPMFVLVRTHDPVAIVAGIAFAVVALSAVYAVIAGFMSAAFPTRVRYSGISIAYQLCALVAGGTTPLVGTMIAQRYRGEWLPLALFFSLLAFVSLVGIVGLGRYRRNLHAVAPRAWAVNP
>NZ_CP009210.1|WP_004540184.1|627220_627619_-|hypothetical-protein
MTPDGCSDGCRRRAVRGGVDGLGVSVLAAMHGMSLSIATFSKNGGAVTVSGGAGDGGDIGMPSSDVAEERAPPNEVFGGVFGVEEMAIDACRLPEMKWRNVERIWMKPVPLRVRSMRDRSAVRLAGGVRCVS
>NZ_CP009210.1|WP_004540546.1|625607_626729_+|cysteine-desulfurase
MTHIYLDYNASTPIDPAVADAMRPLLPEAFGNPSSGHWASVPAKVALDRARAQVATLIGAAPDEIVFTSGGSEANNLALKGTVLASSNAGGHVITQSTEHPAILKPLQFLERLGTEVTCVPVDGNGRVDPDAIRRAITPRTTLITVMHANNETGTIQPIEDIGTIAREHGIRFHTDAAQSIGRIPADVDALGVDLLSIAGHKLYAPKGIGALYVRKGVGLEPLIHGAGHENGRRAGTESALLAAGFGEACALARDLAAMDGIRALRDRLWHALQDRFDDRVRLNGHLEYRLPNTVNVSFVGRVGADVLAALDGVAASTGSACHAGRMTLSPVLAAMGIAEQVGMGAIRFSHGRHTTADEIDTVVAKLSAIARG
>NZ_CP009210.1|WP_004537427.1|624319_625561_+|MFS-transporter
MSKSTMPAGGVAIRLGLKENWRQFALLVLINAFVGGMVGIERTVVPLIGSETFHIQSTTLITSFIVSFGLVKAVANLISGQLADTWGRKRVLVAGWLLGLPVPFMIIAAPNWEWVIAANVLLGLSQGFAWSMTVIMKVDLVGPKARGLAVGLNEFAGYFAVGLTAFLTGYLASRHGLRPAPIYLGVAYAIAGLTLSILVVRDTRDHVCLEAGKPKEATSLSFHDVFLLASLKDRNLFAASQAGLINNLNDGMSWGIFPLFFTGLGLGVERIGILKAAYPIVWGVFQVVTGPLSDRWGRKGLIVAGMWVQAAGLVLTASMGEFRWWLVASVLLGLGTAMVYPSLIAAVSDASDPRWRARALSVYRFWRDLGYAIGALSAGLIADRFGFADAILSIAAVTFLSGAVVAIVMHARH
>NZ_CP009210.1|WP_004540436.1|623574_624315_+|MBL-fold-metallo-hydrolase
MILRQFLHCEPVGISYLLGCGGKSTGVVVDAVAEPGTYLQAAADAGMKIDYVIDTHVHADHLSTGPALADAAGAAYVLSAKADVVLPFKGVEDGDEIRVGNVVIKVLETPGHTPEHISLLVTDRTRAEEPWLALTGHTLMIGDLGRTELAESAEAGARNLFRSVRTLKSLPDYLPLLPGAFAGSACGRGLSATPLSTIGFEKRHNAAFGIDDEAAFVRFMLSDMPPAPPEAARLRAANSGRNPDEI
>NZ_CP009210.1|WP_004537687.1|622827_623502_-|metalloregulator-ArsR/SmtB-family-transcription-factor
MSSAGPKQEIYESLAEVAQAVGHPNRLELLEHLAQRERSVEDLTALSGMSFANTSRHLQILRRARLVDTERRGKNVVYRLAGDSEVVGLMKALGRLGERNVAEVNRVLGDYFHARDSMEPVSRNELTARLADGLVTLLDVRPHDEFAQGHLPGALNIPLAALEARLSELPADTEIVAYCRGPYCVLAFEAVAALRARGFKAARLEDGFPEWKAAGFVVETEPAN
>NZ_CP009210.1|WP_020850371.1|622063_622369_-|hypothetical-protein
MITIITSFQLPAPLAREEARSLFLRAAPKHQGVVGLCANTMSCRKAEGRVYLWNARAQAETMYTDAWKASAYETFGAFPSITYFESPAVVDNATNAIFSDE
>NZ_CP009210.1|WP_004540502.1|620906_621848_+|LysR-family-transcriptional-regulator
MDIKLDTPLLGALRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRHARGLALTPKGGALHEATVAAFASLGRTLRQLSAPDTPLQVSCLPSFALQWLMPRLTEFHRLHPQTPVRLRAEFHAIDRETMSADDIDIAIRWDPFSYGALHVEPLFDESLVAAAAPAYLDRHPPRATAKWVSSVVPLHDASAWPEAPRYVEWRTWLDAVVPGYAGAPRGPEFNLASLAIAAAVAGQGVVVCRQALVDDEIARGRLVNVFARRVPAPAQYKAICARPEDARVKAFVGWLRAESDSYAARRQTQARP
>NZ_CP009210.1|WP_004524797.1|619472_620810_-|D-serine-ammonia-lyase
MPVGRSLSLDPNLLAQLQSHSPTLWLNPHQGMPLPDFAPTAADLADADARLRRCAGLLAELFAELRPSGGLIASPLQPAEPLKRAARAGHAQAGAWYVKRDDALPVAGSIKARGGFHEVLALAESIAERHGLAGADTDRRALASGAARARFARHTVMVGSTGNLGLSIGMLASALGFRTVVHMSADAKAWKKARLRTRGVEVVEHAGDYAKAVDAGRRQAAGMPCCHFVDDEGSRMLFLGYATAAAELAAQLAQAGRPVDARHPLFVHLPCGVGGAPGGIVYGLKALYGEHVHAFVAEPTASPCVLVQLAGDAAHPRSVYDIGLDNRTEADGLAVAQASPLAAALLRAQAAGAFTVDDRQLFAHLLDARERLGIDLEPSAAAAFGGPAWIAGSDAGRAYLRGRGIDPDAATHVIWATGGSLVPAQEHRRFQAHARAQRQVGGAGA
>NZ_CP009210.1|WP_004540450.1|618307_619222_+|LysR-family-transcriptional-regulator
MPARKPGRLPPLNALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGVALFERLPRGLALTADGFAYFADVRRALNLIGDATDRLAKRRANVTISTTPSFASRWLIPRLASFGDEHPGVDLRVIADSQFATFQGDGVDLAIRYGKPPFGKGLVTRLLFPVDIYAVCSPALLATPGALARARDLAGHALLHDAHDLWPEFLAALPERVAIDPAKGPRFNQSSLAIDAAIAGHGVALASDQLVARDIEAGRLRRLFDFALPLSVGYYIVRPSEPRRPGDIAQTEAWLIRQAQLDARRDGA
>NZ_CP009210.1|WP_004190485.1|630046_630970_+|LysR-family-transcriptional-regulator
MNPSDLRDLRLPSLDGLLAFVAAARHGTFERAAEELCVTGSAVAKRVAALEQLLGVQLLVRSGKALTLTAAGNEYLHQVHAPLHLLAAVPLHRRNAGKTERLRICAPPTFARQILVARLDAFTLAHPGVELEVMLASPFPDAPPTGADLWIRGGGPIVSGATVLMVDALTPLAAPSLVERFAPLRRPADLAALPLLCTPLEPWTPWFRVAGLDWPEPANGPKLLDLGLLLEAAVSGQGVALGSPALARPWLAAGALVPLFPRIVRPAAPYYLMPYAPRAAAGAFAAWLADVCERAVRDGAEFLSRHG
>NZ_CP009210.1|WP_004533130.1|631034_632177_+|alpha-hydroxy-acid-oxidizing-protein
MSVPITCIEDLRVLAKKRIPRMFYDYVDTGSYTESTYRANEADFRKIRLRQRVGVDISNRNLRTTMAGQDVAMPVALAPTGLVGMMRADGEILAARAARHFGVPFTLSTMSICSIEDIVAHVGGPFWFQLYMMRDRAFIERLIERASAAGCPALVLTMDLQIAGQRHKDVKNGLSAPPRITLPNLLDMMRKPGWCLGMARTRRRHFGNIVGHVKGVTDMWSLDSWTREQFDPTIGWRDAEWVRRRWNGKLIVKGVLDADDALRAADAGADAIVVSNHGGRQLDGAMSSVEALPAIVEAAGKRVEVWLDGGVRTGQDVLKAVALGARGTMIGRAFLYGVAALGEQGARRALELIARELDTTMALCGCTDIRSVNADVLARR
>NZ_CP009210.1|WP_004190287.1|632334_633183_-|fumarylacetoacetate-hydrolase-family-protein
MKLLRYGPVGQEKPGLLDADGRIRDLSSLIDDVAGGALSDASLARLAAADPASLPLVAGEPRIGACVGRIGKFVCIGLNYADHAAEAGLAVPAEPVVFGKWTSAVSGPHDGIEIPRGSVKTDWEVELGVVIGRACKNVDEADALSHVAGYCVVNDVSEREWQIERGGQWDKGKGFDTFGPIGPWLVTRDEIADPQALDLWLDVDGRRYQSGNTRTMVFTVARLIAYLSRCMSLQPGDVISTGTPPGVGMGVKPSPVYLKPGQTVRCGVAGLGEQQQRTRAAA
>NZ_CP009210.1|WP_004190404.1|633721_634546_+|IclR-family-transcriptional-regulator
MKPRKDAPAGAAQAPHDCEEIERYRAPALDKGLDILELLAEQKEGLTRTEITKELGRNASEIYRMLERLVARQYVIRSPGGDRYTLSLKLYSLAHRHPPLKRLIAEALPPMQRFADAAEQSCHLCVYDRGNLLVIAQVDGPGAWGISVRLGSRVGLVDTASGPVLLAFQTPEQRARMLVEHTKVEGEIALDMREFDALLHEIRATGRLRQKSRQAFGVTDIAYPVLGPSGHAIAALTCPYVRRIDTHAAPCAEDVDAQLRATARHLSMLKEAAA
>NZ_CP009210.1|WP_020850092.1|634844_636248_+|indoleacetamide-hydrolase
MTSHRDTYVRSASVRAIADAVNGGRVRALEQAEAALERLALVEPLAAMTHVAPEIARRAAANVDAQIASGRRLPLAGVPFVIKDNLFTADMPTRAASPALLGFDATRNATAVQQLLDAGAVPLGKANMHELAFGITSANGYFGAVRNPHDPARIAGGSSGGTACAVAAGIAFGLGTDTGGSVRIPAAFCGVAGLRPTPRRYSTEGVLALSPTRDTVGPIAHGIDDLLLLDAVLTGDAGEPAPVALAGLRVGVPDAPYFDGLDPAVAELTERALAALTDAGARLIPLAAHALHEADEACGFPIAGFEALAYWRRFSAERLDLPFAEFVARLGSDDVRHLFRMLIDAPPSSDAYAAAIDVLQSTVRWYDQAFHRTGVDCIALPTVQCDAPLVTDSGHDLPSDAAYALFTRVIRQTGPATLGGVPSVSIPAGLSKHTGVPVGLMLEGPAGNDRRLLAIAREVERLLARAP
>NZ_CP009210.1|WP_004266659.1|636433_636985_+|hypothetical-protein
MDVMAKLLTDLEFQRFSELQQKQASFTITPEEADELRDIVARAQKKRDDRASAMRAIEAYIAQFDITPDELFSPEQIGEAARTYGLIAAGKKERSLPPSLTFNGKPYQWTKTLPDEVRLPLFDAFKAGESIKRFIAMPKDAARCALTVARLERETGAVYADTLLDELAISRKHVEEAAAKLAA
>NZ_CP009210.1|WP_004540372.1|637580_639944_-|GNAT-family-N-acetyltransferase
MTVRNLDALFHPTSVAVVGASPRPGSVGAMVWACVLDGRFGGAIWPVNPKYGELNGHKVYPYVDQLPSAPSVALICTPPATWPGIVRKLGGLGVRAAIIIGEARSGADRAALERALAAAKPYLLRVVGPGSLGVVSPALGAHFGAPACIVKAGGVAWVSQSNALTNAVLGWAHARGLGFSHAVALGGEADVDAADVLDYLASDAETRAILLELDTVKSARKFMSAARAAARNKPVLALRAGRGDSGDLLYTAAFQRAGMVRVDALDDLLDEIEALGVGRAAATSGGVTLVTSDRGVAKLAVDALAAAGETLAQWPRAAVDEVGGALPAGIVAGNPLLLGDDARPEYFGAALKALAQHPPTGTVFVVHATSHSAPAVDVARVLIESRKFARRGMLACFFGGVDAATRDALHVHGIPVHTTPQRLARAHARLVDYQLGRELLMQTPEGTPPQPAASISAARHTARAALAQGRDGFEGDAALEWLAGFGIERATDADVDMGDTIVDITVGMYDDPNFGPVFRYSVPPADGVSAPFVVYGLPPFNTVLARAVVARSPYAHRAPPEPLLQALTALSQAVCDVREIVEMSLVLRVRPTRVVALGPHIRLATGRSRLAIVPYPRYLEQQLDWRGERITVRPIRPEDEAAHRELLSAMTPDDLRMRFFGAIRNFDHSQIARMTQIDYDREMALIATLDDADGRAHTLGAVRAVTDPDNEATEFAIAVRPDQKGKGLGRMLMTRIIDYARSRGTAWMIGEALRENTAMISLAKDSGFAVSSTEEPGVVAFRLKLQP
>NZ_CP009210.1|WP_162473166.1|640485_641379_+|hypothetical-protein
MLKRPSRNIGPAGSGIENGGPANSMHCPIAGNRRAGQKISVQSSERRGPSLTRFEFNAQCHCAISVKYENNGDARRECRANLRSRPRTEAPLAIPLPPPLRQASKLREPAWQAVEERLFGENSGISFMPAPVRRDSIAARMRKLSRKCRLHGFAVHVRWLFPPPGWPIRTDKWRYHALSARRRFSGIAVEHALAARIECETARRKRRGDTRHAPPKVSVFGSQGEAIRDWVSSFGEIARLPRQNRKRRYKWMRRRETFGSIRQVRIDGRSARHPPERIGFIAESTHNPLRREIAGPP
>NZ_CP009210.1|WP_004190530.1|641485_641776_-|H-NS-histone-family-protein
MATYRQLTAQLEKLQQKIDKEREKAITDAIADIKAKIEEYDITPEELGFRSVKAAAKPKRALPPKYLNPKTGETWSGRGRAPAWLGKNRNRFLIKD
>NZ_CP009210.1|WP_004200624.1|641878_642058_-|hypothetical-protein
MFTSDGRATTMVQCPEGGPWDTCIQNARGICGGDFDTIKQSVDNGARNLLFACKARNGF

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Crispr_ID: NZ_CP009210_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009210_2

823306-823391

Orphan

Consensus_repeat	Method
CGGAATGCCCGATCATCGGGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009210_2

>merge|NZ_CP009210|2|823306-823391|CRISPRCasFinder
CGGAATGCCCGATCATCGGGATGCCTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGCCGGAATACCCGATCATCGGGATGC

>NZ_CP009210|2|2|823306-823391|CRISPRCasFinder
CGGAATGCCCGATCATCGGGATGC	CTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGC
CGGAATACCCGATCATCGGGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009210.1\|WP_004541936.1\|830755_832588_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223732
NZ_CP009210.1\|WP_020850285.1\|819804_822078_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|369639
NZ_CP009210.1\|WP_004187469.1\|822210_822606_-\|conjugal-transfer-protein-TraR	unknown	unknown	gnl\|CDD\|224648
NZ_CP009210.1\|WP_004529498.1\|834673_835108_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NZ_CP009210.1\|WP_161956516.1\|835514_836654_-\|porin	unknown	unknown	gnl\|CDD\|238208
NZ_CP009210.1\|WP_004536976.1\|827363_829175_+\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	unknown	unknown	gnl\|CDD\|225098
NZ_CP009210.1\|WP_004542030.1\|823966_825232_+\|polyhydroxyalkanoate-depolymerase	unknown	unknown	gnl\|CDD\|130908
NZ_CP009210.1\|WP_004541900.1\|808872_810324_-\|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|237001
NZ_CP009210.1\|WP_004542004.1\|817000_817591_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009210.1\|WP_004529483.1\|813860_814301_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176863
NZ_CP009210.1\|WP_004200700.1\|814635_815751_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378454
NZ_CP009210.1\|WP_004523292.1\|811374_812607_-\|3-methyl-2-oxobutanoate-dehydrogenase-(2-methylpropanoyl-transferring)-subunit-alpha	unknown	unknown	gnl\|CDD\|223997
NZ_CP009210.1\|WP_004541988.1\|832716_833046_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009210.1\|WP_004523279.1\|829727_830759_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236122
NZ_CP009210.1\|WP_004523291.1\|816049_816985_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NZ_CP009210.1\|WP_041188423.1\|810325_811369_-\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NZ_CP009210.1\|WP_004530663.1\|833049_833499_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341411
NZ_CP009210.1\|WP_004552281.1\|833952_834606_+\|SagB/ThcOx-family-dehydrogenase	unknown	unknown	gnl\|CDD\|380318
NZ_CP009210.1\|WP_020850032.1\|817856_819515_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_CP009210.1\|WP_004541915.1\|825447_827289_+\|ribonucleotide-reductase	unknown	unknown	gnl\|CDD\|180772

Protein	Function_ID	Function_description	E-value
NZ_CP009210.1\|WP_004541936.1\|830755_832588_+\|STAS-domain-containing-protein	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	2.72698e-107
NZ_CP009210.1\|WP_020850285.1\|819804_822078_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|369639	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	4.92098e-57
NZ_CP009210.1\|WP_004187469.1\|822210_822606_-\|conjugal-transfer-protein-TraR	gnl\|CDD\|224648	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms].	1.7869e-14
NZ_CP009210.1\|WP_004529498.1\|834673_835108_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	9.00264e-33
NZ_CP009210.1\|WP_161956516.1\|835514_836654_-\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	2.50846e-54
NZ_CP009210.1\|WP_004536976.1\|827363_829175_+\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	gnl\|CDD\|225098	COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown].	2.74988e-74
NZ_CP009210.1\|WP_004542030.1\|823966_825232_+\|polyhydroxyalkanoate-depolymerase	gnl\|CDD\|130908	TIGR01849, unnamed_protein_product, polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some [Fatty acid and phospholipid metabolism, Degradation].	2.48008e-114
NZ_CP009210.1\|WP_004541900.1\|808872_810324_-\|2-oxo-acid-dehydrogenase-subunit-E2	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	2.33754e-132
NZ_CP009210.1\|WP_004529483.1\|813860_814301_+\|SRPBCC-family-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	1.19676e-25
NZ_CP009210.1\|WP_004200700.1\|814635_815751_-\|hypothetical-protein	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	2.16274e-11
NZ_CP009210.1\|WP_004523292.1\|811374_812607_-\|3-methyl-2-oxobutanoate-dehydrogenase-(2-methylpropanoyl-transferring)-subunit-alpha	gnl\|CDD\|223997	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion].	5.32689e-143
NZ_CP009210.1\|WP_004552281.1\|833952_834606_+\|SagB/ThcOx-family-dehydrogenase	gnl\|CDD\|380318	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC. This family is the oxidase domain of NRPS (non-ribosomal peptide synthetase) and other systems that modify polypeptides by cyclizing a thioester to form a ring. These include EpoB, part of the epothilone biosynthesis pathway; TubD, part of the tubulysin biosynthesis pathway, MtsD, part of the myxothiozol biosynthesis pathway; IndC, part of the indigoidine biosynthesis pathway and TfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.	4.23582e-20
NZ_CP009210.1\|WP_004523279.1\|829727_830759_+\|hypothetical-protein	gnl\|CDD\|236122	PRK07877, PRK07877, Rv1355c family protein.	3.7258e-30
NZ_CP009210.1\|WP_004523291.1\|816049_816985_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.07132e-61
NZ_CP009210.1\|WP_041188423.1\|810325_811369_-\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	0
NZ_CP009210.1\|WP_004530663.1\|833049_833499_-\|CBS-domain-containing-protein	gnl\|CDD\|341411	cd17775, CBS_pair_bact_arch, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and archaea. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	3.14402e-50
NZ_CP009210.1\|WP_020850032.1\|817856_819515_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	5.49793e-37
NZ_CP009210.1\|WP_004541915.1\|825447_827289_+\|ribonucleotide-reductase	gnl\|CDD\|180772	PRK06948, PRK06948, ribonucleotide reductase-like protein; Provisional.	0

>NZ_CP009210.1|WP_004187469.1|822210_822606_-|conjugal-transfer-protein-TraR
MAAFDEHQLQVLGALLRACRQALQADVRAGERQRADEPYANLAGPAPDEGDEANADLFVDVDHALLGMKLAELRDVDAALQRIARRDYGCCADCGQPIAYERLLARPTALRCAPCQRAHERRFATQPRPSL
>NZ_CP009210.1|WP_020850285.1|819804_822078_-|FAD-dependent-oxidoreductase
MREFGYLLVGGGIASVTAARTLRGEDASASIAILCGEPVLPYQRPPLSQEWLMGAVQPASITLHDAAFYAAQRIDIALGVRAEQLDRAKRIVRTSSGATFRYGKLLIATGASAKAPALPGFGLDGVHVLHTFAQAQALKDAAAHARRATVLGGGFLGVEIAATLQALGLQVTLVERAPGVMPSLRAPALGGHFEALCRARGIDVLTRCEVRRVLGAQCVEAVETSDGGTRPCDLFVAAVGVTPNCGWLDGSGLALGDGVEVDAFLQTADPNVFAAGDVAHFDDPIFGVRRRIEHWDNAVRQGRIAARNMLGHRLPYRDVSIFYGSVFGLSYNLLGYPVGATETIERGAFDEASYMQLYLADDVLRAAFTIDRPAVEIAALNDAIRLHVNVAAHKMKLSDPNYPLDKLPVQTILILQGGGALGAFECGAVKALEQHGVCPDVISAVSIGAFNGAIVASHPKGATKALEAFWRELSIALPLPYESQWREAWLSSYVLSFGVPNFLKPQWSQLGFDADRLRAKWTSFFDATAIEQLIARYVDFDSLGMSPTRLLIGAVDVETGEPRIFDSYVDRLSPAHVLASGSLPPGMPWTVVDGRPYWDGGVVSNSPLDLVIARCGQIGGRVFIVDLFSGSKALPTNLVEVMLRREEIAYMDRVRNDLRFEEYASDFRDLVDGILAHVDAPSANEIRQQPLYIRLMGNRAAIDIARITLNREGRLSFIEDYDFSSDAIAQLQQQGYDAALVALANGRSRRRRGRRRA
>NZ_CP009210.1|WP_020850032.1|817856_819515_+|GMC-family-oxidoreductase
MKQQSYDYDYVVVGSGFGGSVSALRLSEKGYRVLVIEQGRRWTPENLPESTWNLSRWQWRPALGLRGFFSMRFFRHVVVLHGNAVGGGSITYANTLLVPPDKVWREGTWAGLEDWERVMPAHYATAKRMLGVVTNRRMDAADFRLKDMAKLIGVEKSFYPTEVGVFFGDDADAPGTRYADPYFGGAGPERTSCIGCGGCMVGCRHGAKNTLDRNYLYLAERLGAQVREQTKVVDVRPLDARADGAAGYAVEAVSLAAGARGAKSRLTCRGVVFAASSLGTQDLLMRLKEKGSLPRLSDALGKRVRTNAESLIGVRFPKSRVDLSKGVAIGSGIYIDEHTHIEATRYPSGSDTMGLLTTVLTRGAPGGLRVLVWLGALAKLVLTRPLSAWQMIVPRGFARETMIFLCMQTLEGHLTMRLKRRWFWPFSKQLATSGAKIPAYIPAANDFAQKAARALGGVPMTSLTEILLNVPMTAHCMGGAAMARDARDGVCDGRSRVFGYRNMYVCDGSVLGANLGVNPSLTITALAEHAMSHVPAAREQRWDSTAETPVAA
>NZ_CP009210.1|WP_004542004.1|817000_817591_+|hypothetical-protein
MCRARGIGRQARGNATAPSPIAAAAIGARPRSAPRGPRISDAGRLAAARSAFAIHQERRKRNADRHGTHPYDADSRAAPREAPRFEHEPKKQRDAAQHEVDRDRAAREIRERIEHKARPDVRRAERPISQDVAQTPIGAAGAISPSTAHSIFLEIGLALAGRPIQVRRNRAPFTHGTPRRRPARGPTARTASPAPV
>NZ_CP009210.1|WP_004523291.1|816049_816985_+|LysR-family-transcriptional-regulator
MIQNLRQLDLNLLLVFDALMQEQNLSRAAIRLHMSQPAVSNALTRLRQQLGEPLFTRTARGMTPTAQARTLYEPVRQALYLLQIGLGPQADFEPDTHHLFKLSMNDYGQTVLLPDLLAHIKSRAPNVMLSVQSDDAGSIPAQLTTGTLDLAIDYLHFDNPELCYEPLHEEHLVVIGRAGHPAFAGGLALRGYEESGHVSIQPRDRRGSPLEIVLGSARVRRVVHLQVPHYLTIPALVAKSDLLGTIPRRLAERFADVYALQIAPLPIDIAPIQVSLIWHRQQDAQPGLRWLREQVVLTHRAIIGCDEHAPA
>NZ_CP009210.1|WP_004200700.1|814635_815751_-|hypothetical-protein
MTQDVTVFRARYRASVHPRYNAWLHGGFVLAYGCAAIAFFLKDVARVSAVQWASVPAAFLLFNWLEFTVHRHVGHVKRRFGAMFYRRHTGDHHSFFANEQIAYREARDWRVILFPAWLIVVFSLGLFALHAVLGRFDANVAGLFASTMLGGYLLYECVHACEHLPDAHPLAKWPWIRQMRVLHRVHHRDALMRSCNFDVIWPLMDWLHGTLRWSEAPGADMSTRMRHEIDIACAGADVLAYASDASRWPEWHPSSLRVDGPAGSLAAGSRFDEDVRAAGRVDRLHWDVVRNEPGVMWQARAANTAGSLRILLTYECSGGPRGARFVRTLHYHSPNPLLRLANALVMRGRVERESAYSLTLLKRRLEAARDA
>NZ_CP009210.1|WP_004529483.1|813860_814301_+|SRPBCC-family-protein
MKQQRIEIAEEFDAPVHQVFRFFSEHENLKSIFSPAKIRRISDGEPARNGVGSAREMRVPGAPPFVETVTAYQENELIEYRITRGSPLRDHLGVMRFVPIDEHRTYFHYVITFEGKVPFVAPVVRHVLEGSIRRGLGKVATRRLWG
>NZ_CP009210.1|WP_004523292.1|811374_812607_-|3-methyl-2-oxobutanoate-dehydrogenase-(2-methylpropanoyl-transferring)-subunit-alpha
MSQYGPLRLHVPEPTGRPGCKTDFSYLRLSPAGKVRKPPIDVAPADTSDLAYGLVRVLDEHGRAVGPWAPDLDPDILRKGIRAMLKTRIFDARMQIAQRQKKISFYMQCLGEEAIAVAHTLALERGDMCFPTYRQQGILMVREYPLVDMMCQLMSNERDPLKGRQLPVMYSTRDAGFFSISGNLATQFIQAVGWAMASAIKGDTRIASAWIGDGATAEADFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGEGATFAGRGVGCGIASLRVDGNDFLAVYAASRWAAERARRNLGPTLIEWVTYRAGPHSTSDDPTKYRPGDDWTNFPLGDPLERLKRHMIGIGVWSEQDHEDTKAALEAEVLAAQKEAERYGTLADEHVPNVASIFEDVYKEMPAHLRRQRQQLGV
>NZ_CP009210.1|WP_041188423.1|810325_811369_-|alpha-ketoacid-dehydrogenase-subunit-beta
MTTASKEGPAAPPMTMIQALRSAMDVMLERDGNVVVFGQDVGYFGGVFRCTEGLQNKYGKSRVFDAPINEGGIVGAAVGMGAYGLRPVCEIQFADYFYPASDQIVSEAARLRYRSAAEFIAPLTIRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLISAIENDDPVIFLEPKRLYNGPFDGHHERPVTPWSKHPASLVPDGYYTVPLDSAAIVRAGGDVTVLTYGTTVHVSLAAAEETGIDAEVIDLRSLWPLDLDTIVESVRRTGRCVVVHEATRTCGFGAELIALVQEHCFHWLEAPVERVTGWDTPYPHAQEWAYFPGPNRVGDALRRAMEN
>NZ_CP009210.1|WP_004541900.1|808872_810324_-|2-oxo-acid-dehydrogenase-subunit-E2
MGVHVIKMPDIGEGIAEVELGLWHVKVGDRVKEDQAIADVMTDKASVEIPSPVTGVVVALGGKEGDVLAVGSELVRLEVEGDGNHKAEPDGGARVAAAQPERVADTAHAHASAAAKSARGEHGAGHGRDDARAASSGTSSGASHTQHAEREARGHRESSEYREDRSVSRGASQTDVERGPASPPPARRPGERPLASPAVRKRAWDLGVELRYVHGTGEAGRILHEDLDAYLQGRGAAAQRARGGQAAYVERHDEEAVPVIGLRRKIAQRMQDAKRRIPHFSYVEEIDVTELEALRAELNRKYGDTRGRLTVLPLLARAMVIALREFPQINARYDDEAGVVTRHGAVHLGIATQSKAGLMVPVVRHAEARDPWSIAAEVARLADAARAGRAERDELSGSTITITSLGALGGIASTPVINSPEVGIVGVNRIVERPMFRGGAVVARKLMNLSSSFDHRVIDGMDAAEFIQAVRGLLEQPALLFVE
>NZ_CP009210.1|WP_004542030.1|823966_825232_+|polyhydroxyalkanoate-depolymerase
MLYAWLEAQREFFRTCQPWAGAAQRAGAGARPAGWPTWGPMARAADAVPAPPSFAIASIEIDGAAVPVDECVVDDTPFCALRKFSRRLRGDAAARPAVFLCTPLAGHHAVMLRETVETILATRDVYVTDWRNARDVPLEAGAFGLDDYVCTLERFVAGAAGDGLHMMAVCQATVPALAAVALLAARDVHVTSVALLGGPVDTRSHPTLIDRFALEHDLDWFRRTAIDIVPPPYAGAGRRVYPGFIQHAAIIVAHPQRRASLESRYWAAWMTGDFAAAARCLREMNEYGAVLDMTERYFLDTIRVIFHERLLAQGRWSIGRRLVAPQRLTRTALCTIEGGRDDIAGAGQTHAAHALCDAVPDAVRERITEPDCDHYDLFLGPRWRRTIHPALDAFWTRAEAARAAAGEPRPTAERAERRIAH
>NZ_CP009210.1|WP_004541915.1|825447_827289_+|ribonucleotide-reductase
MRTINKRTRTIAHADSFVRMIGDMDDQPICDAVFADRYALPGEHSRAQACARVARALALAEPMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHTAPPRDAPGGALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIGATSPCGAQPLPPYGSAMLGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYITSDLRHHAYAASAELAAERGAYPLCDRHAHLDALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGAPGMRAENHAHRLFRSLRGERAALPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV
>NZ_CP009210.1|WP_004536976.1|827363_829175_+|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein
MTTGAVAARRLPRRGTARGRRAPSRAFTIHGGDEMRRSRPPKPAKPAAVRRRPHGAARAHAIRGNGPQRRAVRERAARRLSRDIDAALRRASTYPHPAGPIVRIETHLSVVYLVGRFAYKRLKPFDFGFANFSELAARRRACEAELALNRPLAAPIYLAAGPLVRRARGLRLFGAGAAVDHVVRMRRFDERMLFSRLLARGALDAADIDAAATRLAAYHLHAPRDIPRRAYGSARELRRQLDDMLAPLARALGAALPASLRAWCVRRCDELAAHLDARRADGYVRACHGDLHLNNVVKRGRDALMFDCIDFDDALRWIDVINDLSFLLMDLHAHDRAALAHRLLNRWLDETGDFAGLAALPLYVAYRALVRALVATMRAGGDAAARAARIERARRYVDVAAHAARARRPCLLLCHGYSGSGKSVASRALADVSGAIRLSSDSERKRARPFAAVDARPLPASAYTPQQIDAQYERLRALARDVLRAGYTALVDATFLSHARRARFFALARELGVPVYVLDFHASRACLERRVDARAAARDDRSDAGAAVLATQRASADPLDADERARTIGFDTDVPLATLRSAGYWRPVLDALDAARVDAQATR
>NZ_CP009210.1|WP_004523279.1|829727_830759_+|hypothetical-protein
METSPLKTTTPEAIPPFDPSASVEDKLRLAIHYAILAPSSHNTQPWRFMVGDGSVMLCADRLRALSVVDPYDRELLISCGAALLNLRVALSRFGFAYVIDMFPSPSDPDVIALVRLDPHGYHDESLVPLFDAILERVTTRTPYANEAVPCDVQRALVDAGAAEGAEIACVDAPHALDEIAELIADADRLQFADPRFRRELANWVHPRRHDDGMPAFAAGVPALLDFATPVVASAIRTFDLGGGLAAMHHKLVDGSPLIVGISTASDDRDAWVAAGQALERVLLVAAAAGLTASYLNQPIEIDALRERLRPLLHVDAHPQLLLRIGRGPVVAHAPRRPLMDVVS
>NZ_CP009210.1|WP_004541936.1|830755_832588_+|STAS-domain-containing-protein
MTERERAARGHNDARRGGGDSGGDDEAWRRWLPGIATLRTYRRAWLARDLYAGVALTAVLVPVGMSYAQAAGLPVIAGLNASIAALVGYAIFGPSRILVLGPDSALAALIAGAIAPLAHGEPAHAVALAAALALMSGGFCVLAGLLKLGFVTDLLSKPIQYGYLNGLALTLIASQLPSLLGTVPLGGTFVDQVASLAATVAQGRIDFASLALGGGCLAGIALLRRVAPAWPGMLIAVAGASIVAAWLGAAPDAGGAHAHVAYAHVANAHVALVGSLAGTLPPLGLPSISLADASRLIAGALAIAMVSVADISVLSHVFAQHDGSETDRNQELCALGAANLLAGMLRGCAVSSSASRTPVALAAGARTQLTSLVAAACIALLLVAPTLLARVPLAALAAVVVYSANALVDVRAIVRLYRVRRGECAVSVLCFAGVVLLGVVPGILLAVGLSLLSFVWRAWHPYDAVLGRVEGMHGYHDVSRHPGAALTRGLVAFRWDAPLFHANATIFRDHVRDAIAEAGAPVRCVVIAAEPITDVDVTAADMLATLRDELAARRIALVFAEMKGPVKDRLRTYGLFEKIGADHFFPTVTDAIEHFTRMRKDVATARRARR
>NZ_CP009210.1|WP_004541988.1|832716_833046_-|hypothetical-protein
MLSSRLVSSRLAPCCVYIDIQGEGDVDVDAEGNGNGNIDVIDSKRCEPSGVEPIERAVRRPRYRAQSGCLSGIHRNGIVMPDPMPPTNRFDRLRASAVIVDRTKPRRSP
>NZ_CP009210.1|WP_004530663.1|833049_833499_-|CBS-domain-containing-protein
MNAAEICTREVVACRRTDTVLDAAHLMRDRHVGDLIVVDDAGHAHAPVGMLTDRDIVLSLIAKDVDPAALFVGEIMSAPAAVVHEHDSLWTIAQRMRLTGVRRMPVVNADGALVGMVSVDDLLASVAALFDEIASISRRQIHFEEKARD
>NZ_CP009210.1|WP_004552281.1|833952_834606_+|SagB/ThcOx-family-dehydrogenase
MSDPELLTYQPIAVALPGPAEAGAPAVIDLPPPDLGAGLPLMSALSLRASTREFSSAALAPTTLGELLWAADGVNRPTTGGRTAPSAHAFNEIDVYAALPDGVYRYDAALHRLLLKHAVDARNLTGYQDFVGAAPLDLIYVVRMSRLLSMPKPLRETFSAVAAGAIAQNVALYCASTGLGCVVRGWINHRLLAEALSLNEDELPILAQTVGKPAAHP
>NZ_CP009210.1|WP_004529498.1|834673_835108_-|Hsp20/alpha-crystallin-family-protein
MSNVTRYDPFSLEPVSDLFQGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGVDKNDINVQIDGNTVSISAKVERNKELKEGERVIRRERYSGEFARTFSLANELDRDAASAQYQDGVLSLTLPKKASSEKKKLTIG
>NZ_CP009210.1|WP_161956516.1|835514_836654_-|porin
MGDVMNAKSIAAAALAVAQAGLAHAQSSVTLYGALDAGVLWQNTSAASFSPTAPNTGAVVRFKDGGVYSSLWGIKGTEDLGGGYRVNFRLQGAFDGGTGKFGLSDAPGAVAAFNQIATLGVSGPFGTFNAGRQIVPMIYAMADTDVRAARFFGSVLTAWLGLNTAAGWPGNSTNAPIGALYDSDALVYQSPAFGGALLALEYAPGGVPGGVQRGARASIVLKYASNALNLAAVYYNGHDTNPAPGASATGLDNNRFVYVGAQYKLKDVAVSASYGNGRNPARGDRVNLDMFAFGLGYRVSPFFRVSSGVYYLKDRNRSANRSTSIVLGADYELSKHTTLYAQGGRVDNRGTMAQMLAYGQPVAPGLATTAAMLGMRHSF

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Crispr_ID: NZ_CP009210_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009210_3

2422348-2422512

Orphan

Consensus_repeat	Method
GCGAGCGCGGCGAGCGCGGCCGCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP009210_3

>merge|NZ_CP009210|3|2422348-2422512|PILER-CR
GCGAGCGCGGCGAGCGCGGCGGACAGGCCGCTCGCGACATAGCTCGACGCGACGTAGCGGCGCGCGTCGACGCCCGCGGCGAGCGCGGCCGCGCGATGGGCGCCGAGCGCGTGCAGCGCGAGCCCGTAACGGGTGCGATGGGCGAGCGCGGCGAGCACGGCCGCG

>NZ_CP009210|3|1|2422348-2422512|PILER-CR
GCGAGCGCGGCGAGCGCGGCGGAC	AGGCCGCTCGCGACATAGCTCGACGCGACGTAGCGGCGCGCGTCGACGCCCGCG
GCGAGCGCGGCCGCGCGATGGGCG	CCGAGCGCGTGCAGCGCGAGCCCGTAACGGGTGCGATGGGCGAGCGCG
GCGAGCACGGCCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009210.1\|WP_162473170.1\|2412509_2413265_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009210.1\|WP_004206353.1\|2426677_2427370_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224931
NZ_CP009210.1\|WP_004542798.1\|2416563_2417073_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|171561
NZ_CP009210.1\|WP_004542789.1\|2424948_2425959_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380528
NZ_CP009210.1\|WP_004524130.1\|2432451_2432724_+\|DUF4148-domain-containing-protein	unknown	unknown	gnl\|CDD\|379321
NZ_CP009210.1\|WP_004542732.1\|2423146_2424952_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP009210.1\|WP_004199294.1\|2413280_2413802_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|237123
NZ_CP009210.1\|WP_153260263.1\|2426086_2426515_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	unknown
NZ_CP009210.1\|WP_004542817.1\|2429596_2431060_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP009210.1\|WP_004542824.1\|2418200_2420873_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273805
NZ_CP009210.1\|WP_004542736.1\|2413798_2414623_+\|anti-sigma-factor	unknown	unknown	gnl\|CDD\|227949
NZ_CP009210.1\|WP_004542841.1\|2414680_2415667_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NZ_CP009210.1\|WP_009976571.1\|2427703_2427955_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009210.1\|WP_004524117.1\|2417069_2418074_+\|FecR-family-protein	unknown	unknown	gnl\|CDD\|236622
NZ_CP009210.1\|WP_004542797.1\|2416062_2416290_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009210.1\|WP_004542822.1\|2421091_2422072_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119321
NZ_CP009210.1\|WP_004542826.1\|2432827_2434222_-\|heavy-metal-sensor-histidine-kinase-IrlS	unknown	unknown	gnl\|CDD\|273593
NZ_CP009210.1\|WP_004528277.1\|2415706_2416066_+\|lipoprotein	unknown	unknown	gnl\|CDD\|226765
NZ_CP009210.1\|WP_004198472.1\|2431548_2431797_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009210.1\|WP_004524124.1\|2428117_2429377_-\|monooxygenase	unknown	unknown	gnl\|CDD\|173852

Protein	Function_ID	Function_description	E-value
NZ_CP009210.1\|WP_004206353.1\|2426677_2427370_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	gnl\|CDD\|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	8.15398e-14
NZ_CP009210.1\|WP_004542798.1\|2416563_2417073_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|171561	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional.	4.99978e-71
NZ_CP009210.1\|WP_004542789.1\|2424948_2425959_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380528	cd06305, PBP1_methylthioribose_binding-like, similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. Proteins similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.	1.21406e-120
NZ_CP009210.1\|WP_004524130.1\|2432451_2432724_+\|DUF4148-domain-containing-protein	gnl\|CDD\|379321	pfam13663, DUF4148, Domain of unknown function (DUF4148).	9.38719e-09
NZ_CP009210.1\|WP_004542732.1\|2423146_2424952_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	1.15905e-177
NZ_CP009210.1\|WP_004199294.1\|2413280_2413802_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|237123	PRK12511, PRK12511, RNA polymerase sigma factor; Provisional.	2.21088e-40
NZ_CP009210.1\|WP_004542817.1\|2429596_2431060_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.40707e-36
NZ_CP009210.1\|WP_004542824.1\|2418200_2420873_+\|TonB-dependent-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	7.67057e-87
NZ_CP009210.1\|WP_004542736.1\|2413798_2414623_+\|anti-sigma-factor	gnl\|CDD\|227949	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription].	1.15709e-18
NZ_CP009210.1\|WP_004542841.1\|2414680_2415667_+\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	4.12408e-28
NZ_CP009210.1\|WP_004524117.1\|2417069_2418074_+\|FecR-family-protein	gnl\|CDD\|236622	PRK09774, PRK09774, fec operon regulator FecR; Reviewed.	2.1512e-74
NZ_CP009210.1\|WP_004542822.1\|2421091_2422072_-\|ABC-transporter-permease	gnl\|CDD\|119321	cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.	3.68045e-52
NZ_CP009210.1\|WP_004542826.1\|2432827_2434222_-\|heavy-metal-sensor-histidine-kinase-IrlS	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	0
NZ_CP009210.1\|WP_004528277.1\|2415706_2416066_+\|lipoprotein	gnl\|CDD\|226765	COG4315, COG4315, Uncharacterized protein conserved in bacteria [Function unknown].	2.7211e-31
NZ_CP009210.1\|WP_004524124.1\|2428117_2429377_-\|monooxygenase	gnl\|CDD\|173852	cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.	3.81867e-137

>NZ_CP009210.1|WP_004542822.1|2421091_2422072_-|ABC-transporter-permease
MRDATDRLSRLAALGALAAVLAFFAVAAPGFATLANVERVLVNHFALLAIAALGMTLALSIGAIDLSLGTAIDVASLAFVCALAHRAGCASAALAGLGAALALGAANALLVTRLGIAPFLATLGTLFIGQTIQQLATDGGQPIYLLSTAPPPAFDALAHGVWLGVAAPLWIVAALAGALHVALERSTLGRQARALGAQPGVARHSGLRVGALAAGVFVASALVYGVAGLVLSSTVRSYAPQAGNAYLLNAIGATFIGATLSEARRPNVAGTLLGVLLVSFVANGLLLIGWNFYWQQVASGALVFAVLALGSGVGRERRARDAGQSG
>NZ_CP009210.1|WP_004542824.1|2418200_2420873_+|TonB-dependent-receptor
MDSICNRRPHRAHAGVCADTANAPAGLPEAAQPAARLGAGRPRDAAAPRCARQATSHTSHASHTLHAPCMPQFAPQFAPRRVAPRRVVARVAAAALFSACAAPGVSGAAEPAAATRGYDIPAGSLDAALTRFGREAGILLSFPGELTTGLRSPGLHGRADPAAALDRLLTGTGLVALRQPSGGYTLARLPGPAAAGADAALAADTTLPTVAVRASGPHADSYRPPREAAGLRSDAPLAEVPQAVAIVAQQVLRDQRPRNLDDALANVSGITQGNTLGSTQDTVMKRGFGDNRDGSVMRNGMPIVQGRSLNATTDSVEVLKGPASLLYGIMDPGGVINVVTKQPQLARRHAISALGSTYGGGRNGGELTFDSTGAIGESRVAYRLIVDQTNEQYWRNYGEHRETLVAPSLAWYGRDTQVVLSYEYRRFLMPFDRGTALDPRTNAPLAIPARRRLDEPFNDMRGESNLAQLAIDHQLAPDWKVHVGYSYNRETYDANQIRITAVDPLKGTLTRSNDATHGSRSTDSYGIAYVDGRVTLAGMRHDVQFGVDGEYRQVYRADMLRQPIKTPFSYLNPTYGLVPPSTSVSASDSDQSDTLHTASLFFQDSIHLSERWMLVGGARWVRYSQLAGRGRPFQVNTNLSGTKWLPRAGIVYKWNDALSLYGSYTQSLKPTSKIAPMAGGYVIDGSTAPEEGASWELGAKLDMPGGLAGTLAFFDIDKKHVLVSQYDDATNQTAWRTSGRARSRGIELDVSGRIGARWNVIASYAYIDAKTTEDPLYAGNRLWNVARHTASLAAVYDVGTVLGGDDLRIGAAGRYVGARPGDSANSFTLPAYATADAFATYDTRLGKQKLQFQLNVKNLFNRTYYPSSVNRFFVSVGDARQVSLLTTLQF
>NZ_CP009210.1|WP_004524117.1|2417069_2418074_+|FecR-family-protein
MSGAKPAGGPPAVPERVARRAVQWWVELGAAPASDATRARLARWRAEHPAHDAAWRHIEAVNGRLGHVASALSARAARAALLPPRSRGRRAALKALAVLLFAGGGAWTGQAYLPWRAWGADVRTALGERRTITLADGTTVVLNTDTAIDIRFDDATRGVRLLRGEIMVTSGRDAARAVPRALVIATAHGDVRPVGTRFSVRERGDATRVDVFDGAVRIAPRRAVGRAPLITAGHGADFTRDALAGPPRVLGASAGAWVDGILVASNLRLADLLAEIDRYRPGRVRCDAAVANLRVSGTYPLDDTDRILDTLRETLPVDVEYLSRYWVTVVAARD
>NZ_CP009210.1|WP_004542798.1|2416563_2417073_+|sigma-70-family-RNA-polymerase-sigma-factor
MPANTLRLQREIAALYTGHRGWLHGWLSKKLGCGERAADLVHDTFIRLLARDEPIDAAEPRAFLTTVAQRVLYNHWRRERLERAYLDALAQWPEAVAPSPETRAVLFETLVEIDRMLDGLPAVVRRAFLLAQLDGMTHAQIAAELRVSLATVKRYLVKAGAQCYFAIAA
>NZ_CP009210.1|WP_004542797.1|2416062_2416290_+|hypothetical-protein
MTGKGGAAANSRAATAIVVAASGSISPASRRTALSTMKTTANATARRRDGGTMKAPKEPIASGGAVLAGSVESPV
>NZ_CP009210.1|WP_004528277.1|2415706_2416066_+|lipoprotein
MIRNVLIALVCAAPVAALAEPPKAAGGMIVDDDGMTLYTFDRDTMPGKSACTGGCTANWPAALADAYDKPGGDLGFIAAAGGKHQWTYKGRPLYRFSGDAKPGQHTGDGFGGMWHVARP
>NZ_CP009210.1|WP_004542841.1|2414680_2415667_+|YceI-family-protein
MDAAGSFASFAATLACALSAWLAPSAGIAQTAWPPDAPRVAGASGPPRTPGLARTPAAVTDAPGAATAGALAASPPAATRYRLDPRHSGVTFRVDNFWHAHLTMRFARMRAELSDVGDDRLASRVDVTVDAASLGANVPFVAALVKGSAMLDVARYPEIRFVGTRFERTGATTGVLTGELTIRAMTRPITLAVRFDAGRQLEPDTGARAEREGDESGESGESNPAERRAGQGRRAAELRDGRPRDAGPGVADSRDAMRRETDSGSAHRGAEPPERIARAAPDAARPLAFVADGHFSRTAFGLSRWLPAVGDDVRLRIRAEFVRARADP
>NZ_CP009210.1|WP_004542736.1|2413798_2414623_+|anti-sigma-factor
MSDDPDLCVAPESDEPGLLALSAFVDGELPDAQSRAMARRLASDPRAAGIAAHYRAQRAALRALFADPVATRHGPCVAWPVRTPWWRRAAFAGGALAAGVALGWLGGALAPRFAPSAALQWVAPAAAQRAFARDADLAYALYAPDARHPVEIAVGRDGAPLAWLSARVGRRIAAPSLREYGFALLGARLLPGAGGPAAQFMYENAAGERLALYVSASAQREAAVRPWRDGGRHTFYWVSERTAYALSGQLDEGRLRTIAADVCGELGGHPQRWR
>NZ_CP009210.1|WP_004199294.1|2413280_2413802_+|sigma-70-family-RNA-polymerase-sigma-factor
MSFESDVVGWLPQLRRYARALTGDPAWADDLVQDTVERAFSRMRAFRPDSNLRAWLLTILRHLYIDQLRARREFAVDDDEGPWRTLEAPAGQIDALVLRDVQRMLYRLPLEQREVLLLVCVEELSYQDASAVLGVPVGTVMSRLSRARERMRALLTDAPLRPPLSLTAARHHR
>NZ_CP009210.1|WP_162473170.1|2412509_2413265_+|hypothetical-protein
MVELSLKTRGQGRGGGANEFGRRAPAIVRCARSDGRRFAAASRRREPPRRGLRPDAREGLSDIDRHGENRLPAACRLPPAAYRLSLIAYRLSPAVRRGTPAARRSHPGAGRRTIAHRARRAGTLAGIPAYRHTGIPACPRPPQRFPPREKRANPPIFVMSPCEARNKTRAAFVFIHMGRRPPRRARDARPRPMRRPEAEMESIRMLSAACALLALMLAAGCASPGDMSPSDHAAPMGGYGRGGGSGGGGGY
>NZ_CP009210.1|WP_004542732.1|2423146_2424952_-|sugar-ABC-transporter-ATP-binding-protein
MKAALTTAAASAAAAPDAAGAPLALDVRRVVKRFGGVAALRGASLAVTRGTVHGLIGQNGAGKSTLVKLLAGLHAPDEGEITVGGVPFASGGGGSRASAGAARRHSTGIGFIHQERLLPATFTVAEALFFPHPPTLGGRASRLARLLPLDVKRMRRDCRAVLHTQFGLDLAPDRLIGELSVAEQQIVQITRALLGRHEILVFDEPSAALVSSEVDRLLRTIERLRANGHTILYVSHYLDEIARVCDRVSVLRDGADVAHFEARAVSRDTLVAAMIGAPQPAATAPSAATARADARVSARADAWGDDAHRAPAGADPARPGARAAPGAIALEARDLALPGRFGPLSLAVRRGEIVGLTGGLGSGGKDVIRALFGLARGVRGSIAVDGRPARVRRPHDAVAHGIALVPENRAAHGVALTLPVRENVVLADLSSVSRFGLVHGRREADVARALIRRLDIRPARPDLPARFLSGGNQQKVALAKWLGRASTVYLLDEPTVGVDVGAKAQIYRLIDALARAGAAVLLFSSDLTELLDVTDRVYVMARGEIVAQCASAETTTQDVLAWATLARDARPGGGAGAHDAAARTGTPGAAGAASSAAKVAT
>NZ_CP009210.1|WP_004542789.1|2424948_2425959_-|sugar-ABC-transporter-substrate-binding-protein
MLFAVALAIGAAPACASPAAGAAPPGPRAGHAPLSLAGKRIGITAAGTDHYWDLQAYQGAVDEVKRLGGTPIALDAGRNDSRQIAQIQTLIAQQPDAIIEQLGTASVLEPWLRKIRQAGIPLFTIDTASPSSLNVVTSDNFAIGSQLALKLVNDIRGEGNVLVFNGFYGVPVCAIRYDQLKAVLKWYPKVKIIEPELRDVIPNTAQNAYAQISQLLQKYPKGAISAIWAAWDIPQVGATQAVDAAGRREIRTYAVDGSPEAVALVRNPTSSAAAVVAQQPALIGRTAVRNVARYLAGDRSLPAYTFVPSVLVTKDDAGVARPALGQAPAAAGLARR
>NZ_CP009210.1|WP_153260263.1|2426086_2426515_-|sugar-ABC-transporter-substrate-binding-protein
MQPFAKLPSKRAAPPPRRIMRRGGLSYGFSCMPARNFALAERFREDFVSFDAARAAAFSDWPAISRFRFNGASSGLFSIALKFICDCPIPIETTRRRSRVPTDIGVGIDAREAAGPASARAGRVRFPPRIFACAARAFAAIP
>NZ_CP009210.1|WP_004206353.1|2426677_2427370_+|isoprenylcysteine-carboxylmethyltransferase-family-protein
MATTRRHATATALAAAARPCAAPHADSFLGILIEVFARVVAALALGVFAYAAYLQWRLDPSRITLILLAVSTTLTVGLSLFAEPPKKRDWSPLALFFSVGGTFYYLVFQLTASRQLLPEAAGAAIQLIGLFWQLFAKVSLRKSFGILPANRGIVSRGAYRFVRHPMYLGYLIIDAGFLLTNFSARNLIAVALQIGLQLGRIRREERLLSEDAAYRAYRRSVRYRVIPGLF
>NZ_CP009210.1|WP_009976571.1|2427703_2427955_-|hypothetical-protein
MFSTRSHVLPRVVLLGEPLANAPFVDGEITRPFRDGFWLLPHSTLCLPLAASDMVIVEPDWPGSAGALAGRQLDAGRQSPSPL
>NZ_CP009210.1|WP_004524124.1|2428117_2429377_-|monooxygenase
MSHAPADPTRSTGADYASLAARFRPIFARIAEGAIERDRTRALPHEPIRWLKEAGFGALRVPVHAGGAGASVPQLVQLLIELAAADSNLPQALRGHFAFVEDWLNAPPDAARRAWFDRFASGQLVGNAWTEVGDVALGEVRTKVAKRDGGWVVNGEKYYSTGAIFADWIDVYAQRTDDGGPVIAAVAARQDGVILGDDWDGFGQATTGSGTTRFVDAHVDEANVIDFARRFKYQTAFYQLFHLATLAGIGRAVERDASALVRGRRRVYSHGNAPRVSDDAQILQVVGEISAWAYAAEAIALRAAQPSQRAYEARGGGDAAAEHDANVAAEIESAQGQLVVSELVLRAATHLFDALGASATRATNALDRHWRNARTVASHNPLVYKARIVGDRAVNGTEPPYVWQIGAGPGGPREPEQAA
>NZ_CP009210.1|WP_004542817.1|2429596_2431060_-|MFS-transporter
MSTLDLDAPISTPIRTASDVSRLINASGARANHARVIVLLALGGVFLDAYDLTTLSYGIEDVTREFGLTPALSGLVSASIMIGTILGSLLGGWFTDKVGRYRVFMADMLCFVVAAIVAGLAPNVGVLIAARFVMGLGVGIDLPVAMAFLAEFSKFGGRGNKASRLAAWCPMWYAASSVCFLIVFGLYFALPAEHARWLWRASLIFGAVPALAIIAVRGRYMNESPLWAANQGKLRDAARILRESYGIRAHAADDTPRAAPSQPPVSFRVLFRQPYLPRTLVASAMNLCIPFEYTAIAFFLPTILTQFLGAGVFETIAATLALNVLFALTGGLLGMRLAYRLPSRRVAIAGFALQAAALVTLALLGHPRTALGIGAAVLMLGLWLFAEGFGPGAQMMIYPALSYPASIRGTGLGFGRALTGIGSAFALFVLPILNARLGAGMFWIVAIAAFVPIVFLAAIRFEPTARDVDIDAGPRAQGDRARVRAAA
>NZ_CP009210.1|WP_004198472.1|2431548_2431797_-|hypothetical-protein
MKAPIIAIAFGIALAACAPLRQDSRPGEAGPPIAAPNRGGGNTPPSGARRAANEVVDYAGRPCVNQTLYVKTHPCIFPRLQR
>NZ_CP009210.1|WP_004524130.1|2432451_2432724_+|DUF4148-domain-containing-protein
MNTKTTIVWATAAALTALALSPAAFAQGKTRDEVRQELIRAQHEGVVPAGKNDYPPSAALVARNKELHAISVHGGKTDLALDQHDQTVAR
>NZ_CP009210.1|WP_004542826.1|2432827_2434222_-|heavy-metal-sensor-histidine-kinase-IrlS
MIRRLLPRTLRARLTALIILSTAATLALSGVALYSALHNRLVGMSSYEMSATLAAMRTHLANVANVDDIPRKSDLWIDQLHGHQNLDLAIYDTDGRLRFATRGFVAPRPALGAPQTRVPASAAPAGATFSYLADDAPLRGGNPRTARIVVQYDGKNDHALLRAYAYTVVVIEVLAVVLTAALAYGIAMLGLSPLRRLVARAEQMSSSRLAQPLPELDTSGELKEMEHAFNAMLKRLDESFVRLSQFSSNLAHDMRTPLTNLLAEAQVALSKPRTADEYRDVIESSIDEYQRLSRMIEDMLFLARSDNAQSHLAIRTLDAAAQAERVAGYYEPMAEDAEVSIVVRGKAEVRADALLYHRALSNLISNALNHAPRGSTITIECAQAADAATISVSDTGRGIEAPHRERIFERFYRVDPARHNSASGTGLGLAIVRSIMENHGGTCGVDSEPHVRTTFWLRFPAHAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP009210_1	1.2\|629690\|21\|NZ_CP009210\|CRISPRCasFinder	629690-629710	21	NZ_CP009210.1	629722-629742	1.0
NZ_CP009210_1	1.2\|629690\|21\|NZ_CP009210\|CRISPRCasFinder	629690-629710	21	NZ_CP009210.1	629730-629750	1.0
NZ_CP009210_1	1.2\|629690\|21\|NZ_CP009210\|CRISPRCasFinder	629690-629710	21	NZ_CP009210.1	629738-629758	1.0

1. spacer 1.2|629690|21|NZ_CP009210|CRISPRCasFinder matches to position: 629722-629742, mismatch: 0, identity: 1.0

gacagcacgacagcacgacag	CRISPR spacer
gacagcacgacagcacgacag	Protospacer
*********************

2. spacer 1.2|629690|21|NZ_CP009210|CRISPRCasFinder matches to position: 629730-629750, mismatch: 0, identity: 1.0

gacagcacgacagcacgacag	CRISPR spacer
gacagcacgacagcacgacag	Protospacer
*********************

3. spacer 1.2|629690|21|NZ_CP009210|CRISPRCasFinder matches to position: 629738-629758, mismatch: 0, identity: 1.0

gacagcacgacagcacgacag	CRISPR spacer
gacagcacgacagcacgacag	Protospacer
*********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

70087 : 151152

Leptospira_phage(22.22%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004540193.1\|70087_71065_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_024430891.1\|71207_72452_-	hypothetical protein	NA	NA	NA	NA
WP_152641030.1\|72450_72891_+\|transposase	transposase	NA	NA	NA	NA
WP_085966798.1\|74731_75831_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	9.1e-37	37.3
WP_144084137.1\|78961_79366_-	hypothetical protein	NA	NA	NA	NA
WP_071898245.1\|79313_79823_-	AAA family ATPase	NA	NA	NA	NA
WP_004540177.1\|81545_82805_-	DUF3443 family protein	NA	NA	NA	NA
WP_020850102.1\|82801_83281_-	DUF2844 domain-containing protein	NA	NA	NA	NA
WP_124518502.1\|85500_85602_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_004540565.1\|85632_85851_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_004540443.1\|86298_87012_-	response regulator transcription factor	NA	NA	NA	NA
WP_071898247.1\|89202_89703_-	hypothetical protein	NA	NA	NA	NA
WP_004540369.1\|90820_92242_-	Do family serine endopeptidase	A0A1B1IT49	uncultured_Mediterranean_phage	1.5e-20	28.5
WP_004540191.1\|92581_93424_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_004540242.1\|93494_94274_-	SapC family protein	NA	NA	NA	NA
WP_124518497.1\|94283_96614_-	hypothetical protein	NA	NA	NA	NA
WP_020849944.1\|96738_113034_-	putative bpaA	NA	NA	NA	NA
WP_043944145.1\|113323_113680_-	H-NS histone family protein	NA	NA	NA	NA
WP_085966799.1\|115147_116246_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.3e-55	43.0
WP_080002865.1\|116379_116991_-	MepB family protein	NA	NA	NA	NA
WP_004540454.1\|120716_122267_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_004190933.1\|123621_125664_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	4.2e-35	32.0
WP_004540553.1\|125722_126061_+	hypothetical protein	NA	NA	NA	NA
WP_004190679.1\|126107_127982_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.9e-67	36.2
WP_004190948.1\|128076_128523_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	8.8e-23	48.6
WP_004190342.1\|128689_128902_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_004540586.1\|128981_130205_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_158332789.1\|130180_130351_-	hypothetical protein	NA	NA	NA	NA
WP_011204325.1\|130349_131390_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.7e-93	53.1
WP_004195713.1\|131786_132596_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA
WP_004540286.1\|132746_134651_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA
WP_004525142.1\|134734_135619_-	(2E,6E)-farnesyl diphosphate synthase	NA	NA	NA	NA
WP_004190549.1\|135615_135909_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_004190814.1\|136178_137285_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_004190656.1\|137432_138302_+	sulfurtransferase	NA	NA	NA	NA
WP_004190499.1\|138360_139236_-	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_004539387.1\|139395_139617_-	hypothetical protein	NA	NA	NA	NA
WP_004529029.1\|139799_141749_+	membrane protein	NA	NA	NA	NA
WP_004190401.1\|141970_143353_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_004540200.1\|143671_146443_-	DNA polymerase I	S5M8J1	Bacillus_phage	6.4e-71	30.0
WP_004530319.1\|146444_147194_+	TIGR00730 family Rossman fold protein	A0A1D8KUT5	Synechococcus_phage	5.6e-22	37.8
WP_004190924.1\|147190_147460_+	hypothetical protein	NA	NA	NA	NA
WP_004529031.1\|147611_147896_+	hypothetical protein	NA	NA	NA	NA
WP_004540549.1\|148555_149047_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_004540321.1\|149483_149747_-	hypothetical protein	NA	NA	NA	NA
WP_004540326.1\|149925_151152_-\|protease	trypsin-like serine protease	NA	NA	NA	NA

DBSCAN-SWA_2

523598 : 594905

Planktothrix_phage(15.38%)

integrase,transposase,plate

attL 518226:518245|attR 598504:598523

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
518226:518245	attL	NA	NA	NA	NA
WP_004540471.1\|523598_525284_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_020850088.1\|525733_530302_-	RHS repeat-associated core domain protein	A0A2H4JFP5	uncultured_Caudovirales_phage	2.4e-22	34.3
WP_004524859.1\|530315_531584_-	hypothetical protein	NA	NA	NA	NA
WP_009935223.1\|533519_533966_-	hypothetical protein	NA	NA	NA	NA
WP_153260275.1\|533944_534535_-	hypothetical protein	NA	NA	NA	NA
WP_004540568.1\|535119_535719_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_004524853.1\|535743_536154_-	RidA family protein	NA	NA	NA	NA
WP_004524852.1\|536268_537378_-	asparaginase	NA	NA	NA	NA
WP_004557904.1\|537558_538191_+	DNA-binding protein	NA	NA	NA	NA
WP_004524850.1\|539092_539530_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_020849981.1\|540766_541840_-	porin	NA	NA	NA	NA
WP_004540527.1\|542257_543682_-	aldehyde dehydrogenase (NADP(+))	NA	NA	NA	NA
WP_011205727.1\|543897_545082_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_020850047.1\|545092_545980_-	aldose 1-epimerase	NA	NA	NA	NA
WP_004524844.1\|545982_546753_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_020850130.1\|546767_547631_-	sugar ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.9e-13	25.4
WP_004524842.1\|547627_548596_-	ABC transporter permease	NA	NA	NA	NA
WP_004540209.1\|548616_549615_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004524840.1\|549652_550855_-	mandelate racemase/muconate lactonizing enzyme family protein	Q6A202	Oenococcus_phage	6.9e-46	31.9
WP_004557914.1\|550865_551579_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_004540362.1\|551710_552601_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_004540151.1\|553041_553638_-	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	6.0e-27	38.1
WP_004540399.1\|557130_557478_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.1e-40	72.9
WP_004552577.1\|557474_557882_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	2.9e-12	37.3
WP_038733539.1\|558314_560348_-	hypothetical protein	NA	NA	NA	NA
WP_038733536.1\|560588_562760_-	alpha-galactosidase	NA	NA	NA	NA
WP_004524829.1\|562764_563616_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_004524828.1\|563616_564540_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_004540455.1\|564601_565843_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_020849913.1\|565878_567123_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.1e-22	32.8
WP_041188417.1\|567165_567804_-	hypothetical protein	NA	NA	NA	NA
WP_004536893.1\|569576_570731_-	LacI family transcriptional regulator	NA	NA	NA	NA
WP_004524822.1\|572074_572815_+	hypothetical protein	NA	NA	NA	NA
WP_024429920.1\|573243_573399_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	1.8e-07	75.7
WP_020850165.1\|573364_573871_+	recombinase family protein	A0JC18	Ralstonia_phage	2.2e-17	51.7
WP_076847933.1\|576157_576724_-	suppressor of fused domain protein	NA	NA	NA	NA
WP_085966800.1\|579861_581042_-\|transposase	IS3-like element ISBps1 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.2e-60	42.9
WP_004540288.1\|581668_582820_+	hypothetical protein	NA	NA	NA	NA
WP_071811398.1\|582830_583118_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004540427.1\|584125_586057_-\|transposase	transposase	S5WIU1	Leptospira_phage	6.9e-32	50.4
WP_041188419.1\|585986_586697_-	hypothetical protein	NA	NA	NA	NA
WP_004203275.1\|586712_588917_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	9.6e-46	29.9
WP_004540478.1\|588913_591580_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.8e-78	30.7
WP_004540225.1\|591558_593037_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004524812.1\|593033_594905_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
598504:598523	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1492747 : 1502073

Burkholderia_virus(57.14%)

integrase,transposase

attL 1487677:1487693|attR 1513877:1513893

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1487677:1487693	attL	NA	NA	NA	NA
WP_004188376.1\|1492747_1494730_+	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	1.8e-83	44.8
WP_004547951.1\|1494827_1495208_+	DUF4212 domain-containing protein	NA	NA	NA	NA
WP_004525415.1\|1495201_1497217_+	cation acetate symporter	NA	NA	NA	NA
WP_004542585.1\|1497512_1498712_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JX31	Burkholderia_virus	1.1e-224	99.5
WP_004542626.1\|1498708_1498858_-	bacteriophage protein Gp44	Q8W6Q6	Burkholderia_virus	7.4e-19	98.0
WP_004542548.1\|1499113_1499695_+	hypothetical protein	A9YX38	Burkholderia_phage	2.2e-21	100.0
WP_004552392.1\|1499925_1500144_-	hypothetical protein	Q6JIH9	Burkholderia_virus	9.8e-36	98.6
WP_004525418.1\|1500191_1500413_-	hypothetical protein	NA	NA	NA	NA
WP_004552388.1\|1500689_1500965_-	bacteriophage protein Gp49	Q6JIH4	Burkholderia_virus	2.3e-42	96.7
WP_009923450.1\|1501535_1501805_+	BrnT family toxin	NA	NA	NA	NA
WP_004525420.1\|1501788_1502073_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.4e-10	50.0
1513877:1513893	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1654754 : 1726269

Vibrio_phage(25.0%)

holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004525541.1\|1654754_1655522_-\|holin	phosphocholine cytidylyltransferase family protein	NA	NA	NA	NA
WP_004542630.1\|1655560_1656562_-	HpnL family protein	NA	NA	NA	NA
WP_004542606.1\|1656558_1657332_-	hypothetical protein	NA	NA	NA	NA
WP_004188272.1\|1657328_1658018_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_004188420.1\|1658383_1659898_+	acetyl-CoA hydrolase/transferase family protein	NA	NA	NA	NA
WP_004525545.1\|1661607_1662546_+	hypothetical protein	NA	NA	NA	NA
WP_004202234.1\|1662579_1663128_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004190846.1\|1663130_1664636_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004530039.1\|1664779_1665307_+	hypothetical protein	NA	NA	NA	NA
WP_004190879.1\|1665386_1665818_+	GPW/gp25 family protein	NA	NA	NA	NA
WP_004196180.1\|1665831_1667694_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004190851.1\|1667690_1668680_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004525547.1\|1668682_1671553_+	type VI secretion system ATPase TssH	A0A2I7REQ1	Vibrio_phage	2.4e-60	27.2
WP_004525548.1\|1671543_1673835_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_004190563.1\|1674000_1676289_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_004542632.1\|1676292_1678509_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_004525550.1\|1678508_1679579_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_004530790.1\|1679581_1680298_+	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_004190606.1\|1680340_1680730_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_004202226.1\|1680735_1681329_+	hypothetical protein	NA	NA	NA	NA
WP_020850152.1\|1681325_1682687_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004525553.1\|1682769_1684428_+	OmpA family protein	NA	NA	NA	NA
WP_004525554.1\|1684424_1687928_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004190863.1\|1687986_1688346_+	hypothetical protein	NA	NA	NA	NA
WP_004190471.1\|1688368_1688794_+	hypothetical protein	NA	NA	NA	NA
WP_004536812.1\|1689114_1689390_+	hypothetical protein	NA	NA	NA	NA
WP_004524288.1\|1689940_1690840_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_004542286.1\|1690881_1691172_-	hypothetical protein	NA	NA	NA	NA
WP_020850331.1\|1691061_1692381_+	glycosyltransferase	NA	NA	NA	NA
WP_004542407.1\|1692377_1693961_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_089504360.1\|1693870_1694236_-	hypothetical protein	NA	NA	NA	NA
WP_004543133.1\|1694249_1695245_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_004528656.1\|1695540_1697124_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_004543122.1\|1699401_1701066_-	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	9.2e-57	31.6
WP_004186967.1\|1701198_1702683_-	glycoside hydrolase 68 family protein	NA	NA	NA	NA
WP_004530800.1\|1702952_1703969_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_004523135.1\|1704422_1705622_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	8.4e-12	27.2
WP_004198247.1\|1705799_1706825_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_004543129.1\|1707259_1708534_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	9.0e-105	54.1
WP_004186989.1\|1708606_1709578_+	membrane dipeptidase	NA	NA	NA	NA
WP_004186987.1\|1709728_1710262_+	4-vinyl reductase	NA	NA	NA	NA
WP_004523137.1\|1710322_1712386_+	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_004186901.1\|1712388_1714314_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_004202150.1\|1714318_1715491_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_004530055.1\|1715487_1716273_+	drug:proton antiporter	NA	NA	NA	NA
WP_009975601.1\|1716324_1717566_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_004543120.1\|1717586_1718732_+	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_004186918.1\|1718841_1719705_+	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004530057.1\|1719885_1721541_+	APC family permease	NA	NA	NA	NA
WP_004186920.1\|1721627_1722503_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_021252052.1\|1722646_1723519_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004543140.1\|1723681_1725235_+\|holin	choline-sulfatase	NA	NA	NA	NA
WP_041188444.1\|1725231_1726269_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA

DBSCAN-SWA_5

2460466 : 2467227

Burkholderia_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006027262.1\|2460466_2460763_+	type II toxin-antitoxin system RelE/ParE family toxin	A4JWV2	Burkholderia_virus	5.6e-50	99.0
WP_004202809.1\|2460765_2461122_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	3.9e-42	100.0
WP_004542845.1\|2461165_2461315_-	hypothetical protein	A4JWV0	Burkholderia_virus	9.1e-09	96.3
WP_020850286.1\|2462311_2462794_-	DUF2778 domain-containing protein	NA	NA	NA	NA
WP_041188525.1\|2462863_2463763_-	hypothetical protein	A0JC16	Ralstonia_phage	6.3e-36	39.1
WP_020850011.1\|2464264_2464849_-	hypothetical protein	A0A0K2QQ53	Ralstonia_phage	2.5e-09	53.1
WP_020850148.1\|2464948_2466325_-	type II/III secretion system protein	NA	NA	NA	NA
WP_020850003.1\|2466321_2467227_-	AAA family ATPase	Q6UAZ2	Ralstonia_phage	1.1e-27	37.2

DBSCAN-SWA_6

3026198 : 3078993

Bacillus_virus(20.0%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144399870.1\|3026198_3026879_-\|transposase	transposase	NA	NA	NA	NA
WP_004198523.1\|3027053_3027239_+	hypothetical protein	NA	NA	NA	NA
WP_004542105.1\|3027324_3028230_+	DMT family transporter	NA	NA	NA	NA
WP_004525360.1\|3028819_3029674_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	1.0e-59	47.4
WP_004542104.1\|3029928_3030954_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_004528777.1\|3031065_3032283_+	Tm-1-like ATP-binding domain-containing protein	NA	NA	NA	NA
WP_004201924.1\|3032285_3033128_+	phosphoenolpyruvate hydrolase family protein	NA	NA	NA	NA
WP_004184911.1\|3033173_3033614_+	SRPBCC family protein	NA	NA	NA	NA
WP_004542152.1\|3034020_3035583_+	nitrite reductase, copper-containing	NA	NA	NA	NA
WP_004542156.1\|3035607_3036444_+	formylglycine-generating enzyme family protein	NA	NA	NA	NA
WP_004542117.1\|3036440_3037055_+	SCO family protein	NA	NA	NA	NA
WP_004539459.1\|3038092_3039118_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA
WP_004542046.1\|3039245_3040646_+	autotransporter strand-loop-strand O-heptosyltransferase	NA	NA	NA	NA
WP_004557771.1\|3041625_3042264_+	hypothetical protein	B0FIT1	Escherichia_phage	1.0e-08	37.0
WP_020849960.1\|3042343_3042721_+	hypothetical protein	NA	NA	NA	NA
WP_004542163.1\|3042977_3044831_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_004528788.1\|3044821_3045559_-	response regulator transcription factor	NA	NA	NA	NA
WP_004542083.1\|3045555_3047400_-	sensor histidine kinase	NA	NA	NA	NA
WP_004530571.1\|3047659_3048154_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004528790.1\|3048177_3049677_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004525344.1\|3049896_3050406_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_004528791.1\|3050398_3050860_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004525342.1\|3050896_3052639_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_020850227.1\|3052626_3053649_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_043310938.1\|3053635_3056692_+	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	1.8e-79	29.7
WP_004542090.1\|3056718_3059742_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.2e-22	24.8
WP_004542048.1\|3059767_3062410_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_004542143.1\|3062427_3063492_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_004551877.1\|3063488_3064241_+	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_004200966.1\|3064269_3064662_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_004200965.1\|3064671_3065469_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004536933.1\|3065501_3066899_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004184888.1\|3066895_3067561_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004542112.1\|3067572_3071631_+	type VI secretion system protein ImpL	NA	NA	NA	NA
WP_020850023.1\|3072350_3073562_+	ubiquitin carboxyl-terminal hydrolase family protein	NA	NA	NA	NA
WP_009968904.1\|3073524_3073767_-	hypothetical protein	NA	NA	NA	NA
WP_009968905.1\|3073725_3074019_+	hypothetical protein	NA	NA	NA	NA
WP_004528803.1\|3074023_3074656_+	GTP cyclohydrolase I	A0A0P0HSD2	Acinetobacter_phage	9.9e-20	30.6
WP_161789428.1\|3075716_3077246_-	type III secretion system effector BopC	NA	NA	NA	NA
WP_009925936.1\|3077277_3077721_-	hypothetical protein	NA	NA	NA	NA
WP_004557778.1\|3078354_3078993_+\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009209

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009210

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection