CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP008894	Burkholderia pseudomallei HBPUB10303a chromosome 1, complete sequence	1 crisprs	DEDDh,DinG,csa3,cas3,WYL,PrimPol	0	2	8	0
NZ_CP008893	Burkholderia pseudomallei HBPUB10303a chromosome 2, complete sequence	3 crisprs	cas3,csa3,DinG	1	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP008894_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008894_1

64636-64764

Orphan

Consensus_repeat	Method
GGCTGATCGAAGTGGCTGATCGAAG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP008894_1

>merge|NZ_CP008894|1|64636-64764|CRISPRCasFinder
GGCGGATCGAGGCGGCTCATCGAAGCGATCAATCGAAGCGATCAATCGAAGCGGCCGATCGAAGCGGCTGATCGAAGTGGCTGATCGAAGTGGCTGATCGAAGTGGCTGATCGAAGTGGCTGATCGAAG

>NZ_CP008894|1|1|64636-64764|CRISPRCasFinder
GGCGGATCGAGGCGGCTCATCGAAG	CGATCAATCGAAGCGATCAATCGAAGC
GGCCGATCGAAGCGGCTGATCGAAG	TGGCTGATCGAAGTGGCTGATCGAAGT
GGCTGATCGAAGTGGCTGATCGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008894.1\|WP_009928467.1\|56054_57731_+\|divalent-metal-cation-transporter	unknown	unknown	gnl\|CDD\|334596
NZ_CP008894.1\|WP_004189990.1\|60675_62016_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_CP008894.1\|WP_004188983.1\|76616_76958_+\|copper-binding-protein	unknown	unknown	gnl\|CDD\|378683
NZ_CP008894.1\|WP_009972726.1\|54941_55265_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008894.1\|WP_004189043.1\|58721_60083_+\|glutathione-disulfide-reductase	unknown	unknown	gnl\|CDD\|235701
NZ_CP008894.1\|WP_004548155.1\|71839_73411_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|236625
NZ_CP008894.1\|WP_004523015.1\|69428_69926_+\|membrane-protein	unknown	unknown	gnl\|CDD\|226285
NZ_CP008894.1\|WP_004525920.1\|62920_63628_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008894.1\|WP_004197840.1\|62309_62813_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008894.1\|WP_004188945.1\|67351_67594_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008894.1\|WP_004197846.1\|69922_70429_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008894.1\|WP_004537779.1\|58300_58525_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008894.1\|WP_004189948.1\|68580_69429_+\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP008894.1\|WP_004531011.1\|64816_67345_-\|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NZ_CP008894.1\|WP_004525931.1\|73407_76620_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226220
NZ_CP008894.1\|WP_004525918.1\|60396_60606_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008894.1\|WP_004189576.1\|63997_64198_+\|heavy-metal-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|225328
NZ_CP008894.1\|WP_004523028.1\|54499_54760_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008894.1\|WP_004190125.1\|67909_68584_+\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
NZ_CP008894.1\|WP_004189952.1\|70527_71829_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455

Protein	Function_ID	Function_description	E-value
NZ_CP008894.1\|WP_009928467.1\|56054_57731_+\|divalent-metal-cation-transporter	gnl\|CDD\|334596	pfam01566, Nramp, Natural resistance-associated macrophage protein. The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functional related proteins defined by a conserved hydrophobic core of ten transmembrane domains. This family of membrane proteins are divalent cation transporters. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. By controlling divalent cation concentrations Nramp1 may regulate the interphagosomal replication of bacteria. Mutations in Nramp1 may genetically predispose an individual to susceptibility to diseases including leprosy and tuberculosis conversely this might however provide protection form rheumatoid arthritis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others it is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals. The yeast proteins Smf1 and Smf2 may also transport divalent cations.	2.25202e-84
NZ_CP008894.1\|WP_004189990.1\|60675_62016_+\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_CP008894.1\|WP_004189043.1\|58721_60083_+\|glutathione-disulfide-reductase	gnl\|CDD\|235701	PRK06116, PRK06116, glutathione reductase; Validated.	0
NZ_CP008894.1\|WP_004548155.1\|71839_73411_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|236625	PRK09783, PRK09783, copper/silver efflux system membrane fusion protein CusB; Provisional.	1.21609e-82
NZ_CP008894.1\|WP_004523015.1\|69428_69926_+\|membrane-protein	gnl\|CDD\|226285	COG3762, COG3762, Predicted membrane protein [Function unknown].	3.28284e-21
NZ_CP008894.1\|WP_004190125.1\|67909_68584_+\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	3.13005e-78
NZ_CP008894.1\|WP_004188983.1\|76616_76958_+\|copper-binding-protein	gnl\|CDD\|378683	pfam11604, CusF_Ec, Copper binding periplasmic protein CusF. CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein.	2.10207e-17
NZ_CP008894.1\|WP_004189948.1\|68580_69429_+\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	6.96697e-64
NZ_CP008894.1\|WP_004531011.1\|64816_67345_-\|heavy-metal-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP008894.1\|WP_004525931.1\|73407_76620_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|226220	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism].	0
NZ_CP008894.1\|WP_004189576.1\|63997_64198_+\|heavy-metal-associated-domain-containing-protein	gnl\|CDD\|225328	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism].	3.06996e-08
NZ_CP008894.1\|WP_004189952.1\|70527_71829_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.92924e-16

>NZ_CP008894.1|WP_004189576.1|63997_64198_+|heavy-metal-associated-domain-containing-protein
MKLEVKDMSCGGCANAITQAIQTADSSARVSVDVASKVVDVGSALGIERVVAIIEAAGFHPAVLAA
>NZ_CP008894.1|WP_004525920.1|62920_63628_+|hypothetical-protein
MRAAVAAAAFSASLPAGAAGPAIDPGRYLYVEGGSAHGVLTVKGNAFEIETIGGNCHTCALSGTFDGRVGIARDGENVCRIAVSGGHGDLRLDTSGSDACRDFCGMRASFDGEYRRPGAACTDRARDVRTERSHRQYAAHDYDAARTTLKALLAECGGFMGWIELDRAKSDLALTEYHRGDRAQCVAVLSDTIAYRAQQDHSDAFGLPPCDADNYKSTGDAILHNLALCQAPAKR
>NZ_CP008894.1|WP_004197840.1|62309_62813_+|hypothetical-protein
MFQMLPSMTFGRRLSVWWSCMWRQTLASAPVWILGVAIVGLSISRTHSAAGRPPSGGAAALAVATFFVCLVVCLPIAGYMVRGGFAAHALTAPERLAFRQALMVGLTTFGWAVLAALPISVATMPLRHAGYPLAGQAIGWVLNVAAGLYIVLPRQARRLRLLAGEAA
>NZ_CP008894.1|WP_004189990.1|60675_62016_+|argininosuccinate-synthase
MTTILENLPAGQKVGIAFSGGLDTSAALHWMRIKGAVPYAYTANLGQPDEDDYDAIPKRAIQYGAEGARLIDCRAQLVAEGIAALQCGAFHISTAGVTYFNTTPIGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLVNPDLKIYKPWLDQQFIDELGGRAEMSEFMRQAGFEYKMSAEKAYSTDSNLLGATHEAKDLESLESGIKIVNPIMGVAFWRDDVKIDKEEVTIRFEEGRPVALNGVEYKDAVALLLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGLALLYIAYERLVTGIHNEDTIEQYRENGRRLGRLLYQGRWFDPQAIMLRETAQRWVARAVTGEVTVELRRGNDYSIIGTRSPNLTYQPERLSMEKVQSMFSPRDRIGQLTMRNLDITDTRDKLRIYSQVGLLAAGESSALPKLKEDESGN
>NZ_CP008894.1|WP_004525918.1|60396_60606_-|hypothetical-protein
MRQVSRAAPAGPKWGREGGGRGCGVDGGGVWGSRGGQGGRQSRARQARRTSRGDWIKESGARIVGPLGH
>NZ_CP008894.1|WP_004189043.1|58721_60083_+|glutathione-disulfide-reductase
MEFDYDLFVIGAGSGGVRLSRVAASYGARVGIAEEERIGGTCVLRGCIPKKLLVYASHYSHDVEDAAGYGWTFDIGLFSWPTLIEAKDREIARLSGIYVDLLNKSGVEIHTGRATLVGAHTVDVAGRRVTARHIAVATGSRPVLPPIPGIEHAITSREALELPELPQRIAIVGGGYIAVEFAGIFNGLGVDVDLFYRGEQILRGFDDDVRHALHGEMTKQGVAIHTRATIEAIERGADGGLTLRLAEGAYGPYDAVLYATGRVANGDGLGLEAVGVARDANGAIEVDAYSATTVPSIHAIGDVTARPQLTPVATRDGMLLAANLFGGKRIAADHRYVPSAVFSQPEIATVGLTEAQARAELGALDIYKTSFRALRHTLSGRDEKTFMKLVVARDSQRVVGAHMVGRDAAEIIQGIAIAIRAGATKAQFDETVGIHPTAAEEFVTLRQKEPDDA
>NZ_CP008894.1|WP_004537779.1|58300_58525_+|hypothetical-protein
MGILNTVGEIAGAVAAVEAAEKVDPDAGLLTKAAAAVAGFKGAEALENLVEKKKDDEAADGENTAAPDSDASQA
>NZ_CP008894.1|WP_009928467.1|56054_57731_+|divalent-metal-cation-transporter
MSTPTDISPPIALERDAVLDQAHVGDIKGAFGTIAHHDTAPRSGWWARVRTLLAILGPGLIVMVGDNDAGAFGTYTQAGQNYGTSLLWTLLLLVPVLFVNQEMVLRLGAVTGVGHARLIFERFGKFWGAFSVIDLFILNALTIVTEFIGITFVLDFFGVSKVAGVCIAAALTMAAVSTGDFRRFERFAVALCVLSLLLVPVLVSIHPPVHQMARDLFVPTWPAHAKRSDVMLLVIGIVGTTVAPWQLFFQQSYVIDKRITPRFIKYEKADLWIGIVLVMIGAIAMISFSAALYAGRPEAGGFTDAGGVIAGLAKYAGPTSATLFAIALLDACIIGAAAVSLATAYAIGDVFRIRHSLHRGVSDAKGFYLVYFGIVAAAAALVLMPGSPLGLLTEAVQTLAGVLLPSATVFLLLLCNDRAVLGPWVNSARLNLFTGAVVWVLVMLSIILTASVMYPDMSGEAMLEVLAGGTLFAALGLAATFVLRRRAGGADRANVAHDARDAHVDRAARDTWRMPPLDALPAPRVTLSTRIWMGVLRGYLMLAVGLVIVKVVQMAFFR
>NZ_CP008894.1|WP_009972726.1|54941_55265_-|hypothetical-protein
MTGAKHRENNFRPAHAESFGAMQAARKLTGELARKQNRKESPYFMGFSGLIGRARSCASAQRLCHFYLPIFMRPAYNPPQFIKESHVDTSPGSSRPMPVGIGAAFAN
>NZ_CP008894.1|WP_004523028.1|54499_54760_-|hypothetical-protein
MLFQFLAVRFVHGPLFARRRRAAAARAPSALAMRPTVRARLPFIPRPAGCAIVAATAGAVALGALLSASGQQVGLNQAIRVSWWFS
>NZ_CP008894.1|WP_004531011.1|64816_67345_-|heavy-metal-translocating-P-type-ATPase
MTAAMPRRGDPTGGAFRPGSPPKTSTSTDATGALAMHDAHVHHDHSGDTNERRDPHRPHETKTPGETAVDPVCGMKVPIDTPRRYDYQGRTYRFCSDKCATAFRASPQRFVGTPKQRAGASAAKPGTVYTCPMHPQIRANAPGACPICGMALEPLTPDAAEDGNPELRSMTRRFELGLVLAVPLVLMTMGAMVLPFDIGAGIDALLARWPRPFGMPASWSQWVQAALATPVVLWGGWPFLVRGWKSFVTRRLNMFSLIGLGVCVAYLFSVFALLFPDTLPQAFRSGHEIPLYFEASAVIVTLVLLGQVLELRARSRTSSAIRDLLQLAPHTAVRVNPDGSEQTVPLDAVVVGDTLRVKPGSKVPVDGIVVAGHSSVDESMITGEPVPAEKTEGSPVTGATVNQTGTFVMRAQKIGTDTLLARIVQMVAEAGRSRAPIQKLADQVSGGFVLAVIVLAALAFAAWAAFGPAPALANALVVAISVLIIACPCALGLATPVSIIVGVGRGAREGVLIKDAEALELMEKVDTVVVDKTGTLTEGRPRVQTIVALGGQSERALLGDAASLEGASEHPLAQAIVEHAARMGAERKPVASFDSVPGKGVKGTLDARTVALGNAHLMADLAIDCTAADADSNRLREAGQTVMYVAIDGQLAGYIGVADPIKETTPDAVQLLKASGTRIVMLTGDNPVTANAVARTLSLDGVKAGVLPEDKYRHVQALQQQGHVVAMAGDGVNDAPALAQANVGIAMGTGTDVAMNSARIVLVKGDLRGIARARALSVATMKNIRQNLFFAFVYNAVGIPVAAGVLYPWFGITLSPIFASAAMAASSVSVIGNALRLRGAKT
>NZ_CP008894.1|WP_004188945.1|67351_67594_+|hypothetical-protein
MLRACGRLRAPPARDARARSATPLPGALPARPASPPALARGEQYRVPARAEAPATAIANRAEAFVSGPEQAARMRMAVSL
>NZ_CP008894.1|WP_004190125.1|67909_68584_+|LemA-family-protein
MRFHSSAPRAAATWIRLIRAALLAAFALTLSGCGYNAIQVQDEQVKASWSEVLNQYQRRADLVPNLVNTVKGYANQERDVLTRVTEARAQVGSIRATPELLSDPQAFAKFDAAQGQLTSSLSRLLVVSENYPQLKSDANFRDLQAQLEGTENRITVARNRYIRSVQAYNTTIRSFPSNLTAMAFGYKEKPNFSVENEAQIAKPPRVDFGTSSAPAPAPAAGASN
>NZ_CP008894.1|WP_004189948.1|68580_69429_+|YgcG-family-protein
MKGFLRAACFAILTFLSIGGACRAEQPVPPLAARVTDETGTLTAAERATLEQSLKDFETRKGSQIAVLIVPTTQPETIEQYSIRVVEQWKLGRANVDDGALLIIAKNDRALRIEVGYGLEGVLTDATSRRIIDELIVPSFRRGDFYGGVSAGVGGMMRVIEGEPLPPPRARGGEEGGLGRVLPLLFVMTIVAGGVSRAIFGRLAGSVVTGGVVGFVAWLWSGALLVAIAAAAIALFFTLLGGGMGARVGGPFIGGRGGRGGGNDGFRGGGGGFGGGGASGRW
>NZ_CP008894.1|WP_004523015.1|69428_69926_+|membrane-protein
MDIARIARHLSMTRWRVAAAFPRRTLGKIERAIEASHEKHVGQLRFAVEGALHASMLLRGITARERAIDVFSELRVWDTEHNNGVLIYLLLADHDVEIVADRGIHARVDGDEWERVCRAMEAQFRRGRFEAGSIHGIEAVTALLARHYPSRRAPGDAWPSTPVVL
>NZ_CP008894.1|WP_004197846.1|69922_70429_+|hypothetical-protein
MSRVRRGACTRAVARGDVQPDREQHCARRTANHGYFAALYSCAMKIVRLLLVLLWCATLPLTGLAASGLAGDCPMQQAMSMSEDGAMPSMQDCESMRSSVAGKSGKAGKAANVFCKVMVQCQFGSLYHPMPAADVARPASPGRPLVFHYAKSLTVREPGGLWRPPRTA
>NZ_CP008894.1|WP_004189952.1|70527_71829_+|TolC-family-protein
MYSMLRAPHGRRARLHARTLVAALTFANAAAAFAQSAPLTLDAALQSAADRSAAMQAAQASVQASAELAVKAGQLPDPMLKAGIDNLPVDGPQRFTIGQESMTMRRIGIAQEWVSGDKRRLRTALANEVVGRERAGYLAQLADVRRQTAIAWLDAAYAKKALALQRELADEMNRELAATQAAYRGAKATAADALQARALLAQARDRQANARQAFDTALIGLSRWIAAPALDVAGEPPAPVSFVPSLPPDELRRVQPTLIAADEDVEVADADVALAASERRPNWTWEIAYQQRGAPYANMVSIGVTIPLPLDRRDRQDRDVAQKRALATKARLMYEDARRQVDADIRTQSATLESGRARLAELGRALLPAADERVRLADAAYRAGAGSLADAFAARRARLDARLQVLDLERDVARAWAQLDYQIVPSAMLAAAQ
>NZ_CP008894.1|WP_004548155.1|71839_73411_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MNHIRLTRAALAVLAAVALSAAGYFAGARFGAHVDVAHRAHATNTTNAVDGADAKPGRKVLYWRDPMVPNQHFDKPGPSPFMNMPLEPVYADDGGGAPGVRIDPGLQQNLGIRYAKVRRRDVDEGFDAVGTTQFDESRTAVVQSRVTGYVDRLYASAPLQRIAKGAPIASLFVPDWLAPQEEYLALKRGAMDEALLAASRARMRALSIPDSVIANLDRTGRAQTHIVLASPETGVVSELNVRDGAMATPGQTLAKIAGLSTLWAVIDVPEALASGVRPGMRVDATFEGDPQRRVSGAIREILPGVNATTRTLQARLELDNRALALTPGMLMRARVGASHAASRLVVPSDAVIATGKRSVVIVRTADDRLRPADVTVGRDAGDETEVLAGLEEGETVVASGQFLIDSEASLKSVLPRLEADASGALAARATRPPARSSPPAAQAGGAAPVYETTGKVEKITAADITFSHQPVPALGWGAMTMSFDKPAPAAFANVKAGDTVRFAFEASGDGYRLTKVEPVGGAR
>NZ_CP008894.1|WP_004525931.1|73407_76620_+|efflux-RND-transporter-permease-subunit
MIAHVIRWSIRNRLLVLLATALVAAWGVVSLNRTPLDALPDLSDTQVIVKASYPGKAPRVVEDQVTYPLTTTLLGVPGAKTIRAYSSFGDAFVYVLFDDRTDQYWARSRVLEYLNQVQGRLPQGASVALGPDATGVGWVYEYALVDRSGRRDLGELRALNDWFLKFELKAVPDVAEVASVGGMVRQYQVVLDPDRLRAFGITQAAVADALGKANSESGGSVVEMAESEYMVRASGYLRSLDDFRNVVLRTSESGTPVLLGDVARVQIGPEMRRGIAELNGEGEVAGGVIVMRSGKNALSTIEAVKAKLAELRRSLPAGVELVTTYDRSQLIGRAVDNLKDKLIEEFVVVGLVCALFLFHLRSAFVAILSLPLGVLAAFIVMRHQGVNANLMSLGGIAIAIGAMIDAAVVMIENAHKHLESHEHAHPGAPLSSAARWELIAASAAEVGPALFFSLLIVTLSFVPVFALEGQEGKLFAPLAFTKTYTIAAAAGLSVTLVPVLMGYLIRGRIPREASNPLNRLLVRLYRPLLEATLARPWRAIAIAAAALVLTAIPMSRLGGEFMPPLDEGDLLYMPTALPGISAQKAAELLQQTDRLIKTVPEVATVFGKSGRADTATDPAPLEMFETTIRFRPRGEWRPGMTPGRLVDELDRVVKVPGLSNVWVPPIRNRLDMLSTGIKTPVGVKIAGPELAQIDRIAAQVEAAVKRVPGVTSALAERLNGGRYVDVDIDRRAAARYGLSVGDVQAVVASAIGGENVGEVIAGRERFPINIRYPREVRDSLEKLRALPIVTERGAQILLRDVAAVTIADGPPMIRSENARLSGYVYVDIRGVDLKTAVGAMQRAVAQQVALPPGYSIAWSGQFEYLERAAATLRTVIPVTLAVIFVLLFLTFDSAADALLLMTTVPFALVGGLWFVWALGHAVSVATAVGFIALAGVAAEFGVVMLLYLKRAYERRIAAGEPPNEATLADAIREGAVLRVRPKAMTVAVVLAGLVPIMIGHGSGSEVMQRIAAPMVGGMVTAPLLSMFVIPAAWLLLQRRRMRGAARAASQAPVAGAAGADFSSIHTGESR
>NZ_CP008894.1|WP_004188983.1|76616_76958_+|copper-binding-protein
MKQWIAALMTLAAAAAPAFAAEAAAGPNTPAPPRDARPPAGDALTEAVVRQVDLATGMITLKHGALDNVGMPPMTMTFKAKDIAMAKRVRAGDSVRVRVENVDGVMTVVKLEK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP008894_1	1.2\|64713\|27\|NZ_CP008894\|CRISPRCasFinder	64713-64739	27	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	1015989-1016015	4	0.852
NZ_CP008894_1	1.2\|64713\|27\|NZ_CP008894\|CRISPRCasFinder	64713-64739	27	NZ_CP005085	Sphingobium sp. TKS plasmid pTK1, complete sequence	490950-490976	5	0.815
NZ_CP008894_1	1.2\|64713\|27\|NZ_CP008894\|CRISPRCasFinder	64713-64739	27	NC_009508	Sphingomonas wittichii RW1 plasmid pSWIT02, complete sequence	79837-79863	5	0.815
NZ_CP008894_1	1.1\|64661\|27\|NZ_CP008894\|CRISPRCasFinder	64661-64687	27	NC_010865	Sinorhizobium meliloti plasmid pSmeSM11b, complete sequence	127776-127802	6	0.778
NZ_CP008894_1	1.1\|64661\|27\|NZ_CP008894\|CRISPRCasFinder	64661-64687	27	NZ_CP021216	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence	157384-157410	6	0.778
NZ_CP008894_1	1.1\|64661\|27\|NZ_CP008894\|CRISPRCasFinder	64661-64687	27	NC_008271	Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence	31326-31352	7	0.741

1. spacer 1.2|64713|27|NZ_CP008894|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 4, identity: 0.852

tggctgatcgaagtggctgatcgaagt	CRISPR spacer
gggctgatcgaaggggttgatcgaagg	Protospacer
 ************ **.*********

2. spacer 1.2|64713|27|NZ_CP008894|CRISPRCasFinder matches to NZ_CP005085 (Sphingobium sp. TKS plasmid pTK1, complete sequence) position: , mismatch: 5, identity: 0.815

tggctgatcgaagtggctgatcgaagt	CRISPR spacer
tggctgatcgaagtggatgttcgcggg	Protospacer
**************** ** *** .*

3. spacer 1.2|64713|27|NZ_CP008894|CRISPRCasFinder matches to NC_009508 (Sphingomonas wittichii RW1 plasmid pSWIT02, complete sequence) position: , mismatch: 5, identity: 0.815

tggctgatcgaagtggctgatcgaagt	CRISPR spacer
tggctgatcgaagtggatgttcgcggg	Protospacer
**************** ** *** .*

4. spacer 1.1|64661|27|NZ_CP008894|CRISPRCasFinder matches to NC_010865 (Sinorhizobium meliloti plasmid pSmeSM11b, complete sequence) position: , mismatch: 6, identity: 0.778

cgatcaatcgaagcgatcaatcgaagc	CRISPR spacer
gtagatgtcgaagcgatcaatcgaagc	Protospacer
  *   .********************

5. spacer 1.1|64661|27|NZ_CP008894|CRISPRCasFinder matches to NZ_CP021216 (Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence) position: , mismatch: 6, identity: 0.778

cgatcaatcgaagcgatcaatcgaagc	CRISPR spacer
gtagatgtcgaagcgatcaatcgaagc	Protospacer
  *   .********************

6. spacer 1.1|64661|27|NZ_CP008894|CRISPRCasFinder matches to NC_008271 (Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence) position: , mismatch: 7, identity: 0.741

cgatcaatcgaagcgatcaatcgaagc	CRISPR spacer
gcgctgatcgaagcgatcaatcgaatc	Protospacer
  ....******************* *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

705117 : 716084

Streptococcus_phage(16.67%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041285829.1\|705117_707232_-	elongation factor G	E4ZFJ7	Streptococcus_phage	5.8e-56	26.7
WP_004526282.1\|707541_708051_-	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	4.2e-13	42.2
WP_071810810.1\|708242_708461_-	hypothetical protein	NA	NA	NA	NA
WP_004189780.1\|708723_709302_-	pseudouridine synthase	NA	NA	NA	NA
WP_004189552.1\|709569_710829_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	5.2e-12	63.0
WP_004189626.1\|710801_710984_-	hypothetical protein	NA	NA	NA	NA
WP_024432129.1\|710996_712607_+	multicopper oxidase family protein	NA	NA	NA	NA
WP_004196460.1\|712736_712940_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_004194131.1\|713472_713787_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	4.4e-13	44.6
WP_004196461.1\|713783_716084_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	42.1

DBSCAN-SWA_2

1303700 : 1348522

uncultured_Caudovirales_phage(33.33%)

transposase,coat,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017880799.1\|1303700_1305551_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004526743.1\|1305578_1306994_-	hypothetical protein	NA	NA	NA	NA
WP_004526744.1\|1307017_1307284_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_004521773.1\|1307543_1307771_-	hypothetical protein	NA	NA	NA	NA
WP_024428982.1\|1307804_1310612_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	3.0e-28	24.8
WP_004531150.1\|1310614_1311448_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_004531151.1\|1312145_1312739_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_004536040.1\|1312735_1315144_+	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_004526753.1\|1315252_1318588_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_009930788.1\|1319373_1319913_+	lipoprotein	NA	NA	NA	NA
WP_004526756.1\|1320145_1320388_+	hypothetical protein	NA	NA	NA	NA
WP_004526757.1\|1320406_1320712_+	hypothetical protein	NA	NA	NA	NA
WP_004526758.1\|1320724_1323565_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	3.1e-20	25.7
WP_004526759.1\|1323566_1324442_+	hypothetical protein	NA	NA	NA	NA
WP_004526760.1\|1324438_1327282_+	hypothetical protein	NA	NA	NA	NA
WP_004526761.1\|1327399_1328320_+	hypothetical protein	NA	NA	NA	NA
WP_004526762.1\|1328450_1328702_+	DUF1153 domain-containing protein	NA	NA	NA	NA
WP_111963064.1\|1328659_1329568_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_004545125.1\|1329994_1330183_-	hypothetical protein	NA	NA	NA	NA
WP_076851599.1\|1330196_1330490_+	hypothetical protein	NA	NA	NA	NA
WP_080250005.1\|1331433_1332126_+	hypothetical protein	NA	NA	NA	NA
WP_009961431.1\|1332267_1333362_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_009951519.1\|1334055_1334223_-	hypothetical protein	A0A0P0ZBS5	Stx2-converting_phage	9.5e-07	50.0
WP_009951521.1\|1334437_1334698_+	hypothetical protein	NA	NA	NA	NA
WP_004538387.1\|1334979_1335426_+	hypothetical protein	NA	NA	NA	NA
WP_153260188.1\|1336569_1336995_+	hypothetical protein	NA	NA	NA	NA
WP_004526772.1\|1337652_1338573_+	hypothetical protein	NA	NA	NA	NA
WP_004526773.1\|1338832_1340146_+	divalent metal cation transporter	NA	NA	NA	NA
WP_004191144.1\|1341039_1341309_+	hypothetical protein	NA	NA	NA	NA
WP_004193855.1\|1341572_1341854_-	H-NS histone family protein	NA	NA	NA	NA
WP_004526776.1\|1342321_1343305_-	amidohydrolase family protein	NA	NA	NA	NA
WP_004538381.1\|1343349_1344636_-	MFS transporter	NA	NA	NA	NA
WP_004196705.1\|1345052_1345946_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004531175.1\|1346283_1346505_+	hypothetical protein	NA	NA	NA	NA
WP_004526780.1\|1346590_1346776_+	hypothetical protein	NA	NA	NA	NA
WP_004526781.1\|1346762_1347308_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_004526782.1\|1347360_1347921_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_004526783.1\|1347997_1348522_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_3

1437503 : 1509468

Streptococcus_phage(25.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011205251.1\|1437503_1438967_-\|transposase	IS1182-like element ISBma2 family transposase	A0A1X9I5T2	Streptococcus_phage	4.0e-80	38.8
WP_004193882.1\|1439107_1440781_-	electron transfer flavoprotein-ubiquinone oxidoreductase	NA	NA	NA	NA
WP_004192152.1\|1440961_1441741_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_004191805.1\|1441785_1442217_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_004521691.1\|1442594_1443668_-	hypothetical protein	NA	NA	NA	NA
WP_004526830.1\|1444596_1446129_-	cellulase family glycosylhydrolase	NA	NA	NA	NA
WP_004191840.1\|1446720_1447266_-	PAS domain-containing protein	NA	NA	NA	NA
WP_004192091.1\|1447518_1448223_+	CoA transferase subunit A	NA	NA	NA	NA
WP_004191181.1\|1448224_1448866_+	CoA transferase subunit B	NA	NA	NA	NA
WP_004526833.1\|1449269_1449992_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_004526834.1\|1450035_1451136_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_004526835.1\|1451150_1451708_-	ester cyclase	NA	NA	NA	NA
WP_004192063.1\|1451895_1452801_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_041285831.1\|1452826_1453729_+	hypothetical protein	NA	NA	NA	NA
WP_011832186.1\|1453896_1455033_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_004526838.1\|1455106_1455460_+	RidA family protein	NA	NA	NA	NA
WP_004205973.1\|1455504_1457742_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	NA	NA	NA
WP_004191232.1\|1458200_1460108_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.7e-123	37.5
WP_071810680.1\|1460157_1460682_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	4.1e-11	28.7
WP_004191477.1\|1460874_1461072_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_004192938.1\|1461102_1461462_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_004534778.1\|1461610_1462624_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	3.5e-27	39.3
WP_004526839.1\|1462711_1465144_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_004197408.1\|1465216_1465621_+	integration host factor subunit alpha	A0A1P8CWT5	Bacillus_phage	2.8e-12	41.1
WP_004526841.1\|1465679_1466084_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_009930630.1\|1466205_1468326_-	hypothetical protein	NA	NA	NA	NA
WP_004548139.1\|1468825_1470010_-	acyltransferase	A0A166XZF2	Gordonia_phage	4.4e-13	28.4
WP_009961431.1\|1470307_1471402_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_004548136.1\|1472074_1473283_-	DUF3443 domain-containing protein	NA	NA	NA	NA
WP_004531206.1\|1474133_1475339_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_004538372.1\|1475450_1476914_-\|transposase	IS1182-like element ISBma2 family transposase	A0A1X9I5T2	Streptococcus_phage	6.8e-80	38.6
WP_004193694.1\|1477496_1477787_+	hypothetical protein	NA	NA	NA	NA
WP_004191628.1\|1477836_1478094_-	hypothetical protein	NA	NA	NA	NA
WP_004521679.1\|1478242_1478521_-	hypothetical protein	NA	NA	NA	NA
WP_004521678.1\|1478759_1479482_-	YdcF family protein	NA	NA	NA	NA
WP_004199444.1\|1479682_1480000_+	hypothetical protein	NA	NA	NA	NA
WP_004521676.1\|1480158_1480416_-	hypothetical protein	NA	NA	NA	NA
WP_004199443.1\|1480621_1481023_-\|transposase	transposase	NA	NA	NA	NA
WP_004193481.1\|1481441_1482344_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	4.5e-10	23.6
WP_004526848.1\|1482762_1484133_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	4.2e-23	35.1
WP_004548140.1\|1484196_1485861_+	pseudouridine synthase	NA	NA	NA	NA
WP_004193908.1\|1486165_1486627_+	ribosome maturation factor RimP	NA	NA	NA	NA
WP_004193517.1\|1486623_1488099_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_004526850.1\|1488190_1491118_+	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	6.8e-23	25.3
WP_004199441.1\|1491223_1491592_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_038707860.1\|1491618_1492554_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_004526853.1\|1492823_1494383_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_004526854.1\|1494405_1495641_-	EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004534804.1\|1495708_1497205_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_004192835.1\|1497304_1497802_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_004193111.1\|1498096_1499923_+	translational GTPase TypA	NA	NA	NA	NA
WP_004533598.1\|1500034_1501498_+\|transposase	IS1182-like element ISBma2 family transposase	A0A1X9I5T2	Streptococcus_phage	8.8e-80	38.6
WP_004526855.1\|1501852_1504717_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA
WP_004526856.1\|1504851_1506129_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA
WP_004521669.1\|1506228_1507659_+	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	1.9e-42	28.0
WP_020850655.1\|1507765_1508863_+	cell division protein ZapE	NA	NA	NA	NA
WP_004191720.1\|1509057_1509468_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2138415 : 2144106

Ralstonia_virus(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004527234.1\|2138415_2138649_+	hypothetical protein	A4PE26	Ralstonia_virus	4.3e-13	60.6
WP_004531416.1\|2138684_2138912_-	hypothetical protein	Q8W6S4	Burkholderia_virus	3.8e-22	75.8
WP_009937072.1\|2139165_2139561_+	hypothetical protein	NA	NA	NA	NA
WP_085952178.1\|2139771_2140882_+\|transposase	IS3-like element ISBp1 family transposase	NA	NA	NA	NA
WP_004527236.1\|2141053_2141479_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	3.8e-15	49.4
WP_004527237.1\|2141475_2141982_+	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	5.1e-19	40.1
WP_038763587.1\|2142323_2142926_+	hypothetical protein	NA	NA	NA	NA
WP_004534826.1\|2142932_2143658_+	hypothetical protein	A4PE26	Ralstonia_virus	1.7e-31	43.5
WP_076811937.1\|2143842_2144106_-	hypothetical protein	Q8W6S4	Burkholderia_virus	5.0e-26	85.5

DBSCAN-SWA_5

2660724 : 2669605

Tanapox_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004533881.1\|2660724_2661567_+	alpha/beta hydrolase	A7XCB7	Tanapox_virus	2.1e-17	26.6
WP_004533906.1\|2661909_2662833_-	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	8.4e-44	36.5
WP_041285833.1\|2663011_2664301_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_004550116.1\|2664527_2665430_-	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	3.3e-53	39.9
WP_004189725.1\|2665809_2666127_-	competence protein ComE	NA	NA	NA	NA
WP_004537712.1\|2666198_2667191_-	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	9.1e-28	30.9
WP_009921652.1\|2667249_2668173_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.3e-15	27.1
WP_004537711.1\|2668204_2669605_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	4.2e-79	38.5

DBSCAN-SWA_6

3015234 : 3024488

unidentified_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004522151.1\|3015234_3016782_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	4.3e-24	31.2
WP_004194373.1\|3016818_3017346_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_004532195.1\|3017342_3018026_+	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	2.0e-05	26.0
WP_004194137.1\|3018090_3018906_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	8.8e-37	33.3
WP_024432080.1\|3019089_3021105_-	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	3.7e-52	34.3
WP_004522147.1\|3021138_3022269_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	1.7e-22	27.6
WP_004527678.1\|3022535_3024488_-	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	2.7e-148	49.2

DBSCAN-SWA_7

3327629 : 3384043

Burkholderia_phage(33.33%)

integrase,tRNA,plate,tail

attL 3340462:3340479|attR 3389474:3389491

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004539234.1\|3327629_3328928_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_004527811.1\|3328994_3330077_+	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	6.7e-08	46.6
WP_004534980.1\|3330120_3330978_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_004186955.1\|3331057_3331366_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_017881268.1\|3331380_3331968_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_004547593.1\|3332251_3333040_+	dioxygenase	NA	NA	NA	NA
WP_004527813.1\|3333437_3335039_-	APC family permease	NA	NA	NA	NA
WP_004196837.1\|3335472_3335676_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.3e-21	73.1
WP_004198058.1\|3335860_3337123_-	Hsp70 family protein	NA	NA	NA	NA
WP_004198059.1\|3337761_3338367_-	nitroreductase family protein	NA	NA	NA	NA
WP_004535766.1\|3338328_3338904_+	hypothetical protein	NA	NA	NA	NA
WP_004535445.1\|3338863_3340147_-	MFS transporter	NA	NA	NA	NA
WP_004534987.1\|3340305_3340950_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
3340462:3340479	attL	NA	NA	NA	NA
WP_004527819.1\|3341287_3341911_+	DUF1415 domain-containing protein	NA	NA	NA	NA
WP_004521971.1\|3342002_3342899_-	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_004535007.1\|3343026_3344163_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_004547585.1\|3344139_3344445_+	hypothetical protein	NA	NA	NA	NA
WP_004547582.1\|3344519_3345638_-	acyltransferase	NA	NA	NA	NA
WP_004534982.1\|3345636_3346116_+	hypothetical protein	NA	NA	NA	NA
WP_004199982.1\|3346075_3346579_-	lipoprotein	NA	NA	NA	NA
WP_004204896.1\|3347182_3349348_+	peptidase	A0A0P0IY26	Acinetobacter_phage	1.9e-46	27.1
WP_009945507.1\|3349929_3350328_+	hypothetical protein	NA	NA	NA	NA
WP_004185238.1\|3350403_3350640_+	hypothetical protein	NA	NA	NA	NA
WP_004204906.1\|3350742_3350973_+	hypothetical protein	NA	NA	NA	NA
WP_004527830.1\|3351206_3351563_-	hypothetical protein	NA	NA	NA	NA
WP_004199991.1\|3351588_3352857_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004521963.1\|3352871_3355133_+	peptidase domain-containing ABC transporter	A0A2R8FG22	Brazilian_cedratvirus	2.3e-10	31.9
WP_004527831.1\|3355129_3356578_+	TolC family protein	NA	NA	NA	NA
WP_004539225.1\|3356787_3357756_-	hypothetical protein	NA	NA	NA	NA
WP_004199998.1\|3357881_3358733_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_004200000.1\|3358883_3358997_+	hypothetical protein	NA	NA	NA	NA
WP_024431997.1\|3359004_3362898_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004200003.1\|3362894_3363884_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_004527834.1\|3363888_3364821_+	OmpA family protein	NA	NA	NA	NA
WP_004521957.1\|3365026_3366148_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_004202807.1\|3366237_3368907_-	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	3.8e-89	32.0
WP_004200010.1\|3368940_3370041_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004527836.1\|3370004_3371843_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004204912.1\|3371922_3372405_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004527837.1\|3372462_3372966_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004521953.1\|3373038_3374529_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004521952.1\|3374545_3375064_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004531875.1\|3375100_3375772_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_004521950.1\|3376145_3376760_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004521949.1\|3376868_3378215_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004521948.1\|3378211_3378997_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004553848.1\|3379098_3379464_+	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	3.3e-52	87.6
WP_111963042.1\|3379567_3380158_-	hypothetical protein	NA	NA	NA	NA
WP_076880366.1\|3380553_3381156_-	site-specific DNA-methyltransferase	K4NZW3	Burkholderia_phage	5.6e-81	87.9
WP_004527843.1\|3381053_3381467_-\|tail	phage tail protein I	K4NXA0	Burkholderia_phage	8.0e-71	100.0
WP_004552669.1\|3381459_3381786_-	hypothetical protein	A4JWY2	Burkholderia_virus	2.3e-52	99.1
WP_004547612.1\|3382621_3384043_+\|integrase	integrase family protein	NA	NA	NA	NA
3389474:3389491	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3619712 : 3626449

Burkholderia_phage(22.22%)

integrase

attL 3619268:3619282|attR 3628466:3628480

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3619268:3619282	attL	NA	NA	NA	NA
WP_024428549.1\|3619712_3620357_-	chitin-binding protein	A0A0K1Y848	Apis_mellifera_filamentous_virus	3.4e-07	30.5
WP_004525721.1\|3621257_3621506_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	4.0e-41	97.6
WP_004530408.1\|3621662_3622742_-	DUF3396 domain-containing protein	A9YX32	Burkholderia_phage	2.2e-160	99.0
WP_009932249.1\|3622741_3623194_-	VRR-NUC domain-containing protein	Q8W6S1	Burkholderia_virus	2.3e-31	58.8
WP_009932250.1\|3623451_3623994_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	8.1e-47	55.8
WP_004530410.1\|3624247_3625165_-	DUF4935 domain-containing protein	A4PE40	Ralstonia_virus	4.0e-46	40.6
WP_009922658.1\|3625164_3625482_-	helix-turn-helix transcriptional regulator	A0A088CD40	Shigella_phage	6.2e-15	57.0
WP_009932253.1\|3625489_3625810_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	1.0e-12	58.6
WP_004553012.1\|3625861_3626449_-\|integrase	site-specific integrase	A0A0S2SYQ7	Pseudomonas_phage	9.1e-44	50.0
3628466:3628480	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP008893

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP008893_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008893_1

1883642-1883734

Orphan

Consensus_repeat	Method
GCGCGTCGGCGCGCGCGGCGGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008893_1

>merge|NZ_CP008893|1|1883642-1883734|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGATCAGCCGCTCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCAGCGCGTCGTCGCGCGCGGCGGCGA

>NZ_CP008893|1|1|1883642-1883734|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGA	TCAGCCGCTCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCA
GCGCGTCGTCGCGCGCGGCGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008893.1\|WP_004529174.1\|1873638_1875474_+\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_CP008893.1\|WP_004524995.1\|1868091_1869165_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|235136
NZ_CP008893.1\|WP_004524989.1\|1877929_1878439_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008893.1\|WP_004529180.1\|1880360_1881209_-\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|376304
NZ_CP008893.1\|WP_004188840.1\|1888085_1889879_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|213656
NZ_CP008893.1\|WP_044363669.1\|1878496_1879000_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008893.1\|WP_004537465.1\|1869161_1872362_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP008893.1\|WP_004530237.1\|1885196_1885697_-\|AtpZ/AtpI-family-protein	unknown	unknown	gnl\|CDD\|378198
NZ_CP008893.1\|WP_004530238.1\|1881205_1883206_-\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183987
NZ_CP008893.1\|WP_024431885.1\|1889889_1891293_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236180
NZ_CP008893.1\|WP_004187193.1\|1883952_1884201_-\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|184067
NZ_CP008893.1\|WP_004540302.1\|1891289_1892468_+\|acetate/propionate-family-kinase	unknown	unknown	gnl\|CDD\|235922
NZ_CP008893.1\|WP_004198321.1\|1879076_1880102_-\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|176257
NZ_CP008893.1\|WP_004188221.1\|1885693_1886149_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|184057
NZ_CP008893.1\|WP_004524985.1\|1884895_1885204_-\|membrane-protein	unknown	unknown	gnl\|CDD\|274462
NZ_CP008893.1\|WP_004187346.1\|1884197_1884899_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|237383
NZ_CP008893.1\|WP_004524993.1\|1872364_1873489_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NZ_CP008893.1\|WP_004529183.1\|1886138_1887725_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|183615
NZ_CP008893.1\|WP_004524990.1\|1875823_1877389_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185008
NZ_CP008893.1\|WP_004524981.1\|1887696_1887954_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP008893.1\|WP_004529174.1\|1873638_1875474_+\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	4.08999e-132
NZ_CP008893.1\|WP_004524995.1\|1868091_1869165_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	1.83012e-39
NZ_CP008893.1\|WP_004529180.1\|1880360_1881209_-\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|376304	pfam00231, ATP-synt, ATP synthase.	1.01746e-33
NZ_CP008893.1\|WP_004188840.1\|1888085_1889879_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|213656	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis].	6.3979e-179
NZ_CP008893.1\|WP_004537465.1\|1869161_1872362_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.91562e-92
NZ_CP008893.1\|WP_004530237.1\|1885196_1885697_-\|AtpZ/AtpI-family-protein	gnl\|CDD\|378198	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophobic stretches and is presumed to be a subunit of the enzyme. It carries two transmembrane helices and is a magnesium or calcium uniporter. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI.	4.39073e-17
NZ_CP008893.1\|WP_004530238.1\|1881205_1883206_-\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|183987	PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.	0
NZ_CP008893.1\|WP_024431885.1\|1889889_1891293_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	gnl\|CDD\|236180	PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated.	0
NZ_CP008893.1\|WP_004187193.1\|1883952_1884201_-\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|184067	PRK13468, PRK13468, F0F1 ATP synthase subunit C; Provisional.	4.45015e-37
NZ_CP008893.1\|WP_004540302.1\|1891289_1892468_+\|acetate/propionate-family-kinase	gnl\|CDD\|235922	PRK07058, PRK07058, acetate/propionate family kinase.	0
NZ_CP008893.1\|WP_004198321.1\|1879076_1880102_-\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|176257	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP008893.1\|WP_004188221.1\|1885693_1886149_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|184057	PRK13447, PRK13447, F0F1 ATP synthase subunit epsilon; Provisional.	4.44077e-63
NZ_CP008893.1\|WP_004524985.1\|1884895_1885204_-\|membrane-protein	gnl\|CDD\|274462	TIGR03165, F1F0_chp_2, F1/F0 ATPase, Methanosarcina type, subunit 2. Members of this protein family are uncharacterized, highly hydrophobic proteins encoded in the middle of apparent F1/F0 ATPase operons. We note, however, that this protein is both broadly and sparsely distributed. It is found in about only about two percent of microbial genomes sequenced, with the first ten examples found coming from the Euryarchaeota, Chlorobia, Betaproteobacteria, Deltaproteobacteria, and Planctomycetes. In most of these species, surrounding operon appears to represent a second F1/F0 ATPase system, and the member proteins belong to subfamilies with the same phylogenetic distribution as the current protein family.	4.12229e-10
NZ_CP008893.1\|WP_004187346.1\|1884197_1884899_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|237383	PRK13421, PRK13421, F0F1 ATP synthase subunit A; Provisional.	1.54059e-122
NZ_CP008893.1\|WP_004524993.1\|1872364_1873489_+\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	3.93708e-26
NZ_CP008893.1\|WP_004529183.1\|1886138_1887725_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|183615	PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.	0
NZ_CP008893.1\|WP_004524990.1\|1875823_1877389_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	2.47951e-79

>NZ_CP008893.1|WP_004530238.1|1881205_1883206_-|F0F1-ATP-synthase-subunit-alpha
MTPTPDAPAAADADAATGAGWLARRRGALARVALAPVAQAIGRVERVADGIAFVSGLEDTMLNEVLRFEGGVTGFAHTLDEDLISVVLLDPDAGVRAQTAVARTGAVLEVPAGPQLLGRVVDPLGRPLDGGAPLDAAHTLPIERAAPAIIERDLVSEPLDTGVLIVDALFTIGRGQRELIIGDRATGKTSLAIDAIVNQRHSDVICVYVAIGQRASAVRRVIDAVRRYGAPERCVFVVAPAACAPGLQWIAPFAGFSIAEYFRDRGQHALVVVDDLTKHAATHRELALLTREPPGREAYPGDIFYVHARLLERAAKLSAALGGGSLSALPIAETDAGNLAAYIPTNLISITDGQIVLDSALFAANQRPAVDVGLSVSRVGGKAQHPALRAASGRLRLDYAQFLELEAFTRFGGLTDARLRAQITRGERIRALITQPRFRALRTLDEVVLLKALAAGALDAMSPDLVAPLRERLPAWLDARIAALTPALAPPRDWLADDAALDALAESVGELIERIAADAARRATAGMPAEDAAGDIGGAFGGEQARGDADRDADHGANREVSREVSPEASREVSREVSCEVSHEADRDAAADAARVAGRAPGRAEPDRAAPRAMPDGPPRAQADGDRASASRPRPDARGDAARTAPSPQGGADANVDAEAEARHKR
>NZ_CP008893.1|WP_004529180.1|1880360_1881209_-|F0F1-ATP-synthase-subunit-gamma
MSDKLAAIEARTDTARQLQTVIGAMQGVAAARAHEAQQRLPGIRASAATVGAAIGDALSAGARSGDTAAGARAAPRARLVVVLCSEQGFVGAYNAQLIEHATRPEPSVSREYMMVGSRGAMLADAGGVPLVWRTPMAARADDVVHLANRITDALYAHLAKRGAQPVSIVHAMPGGAARLEATERRLLPFDYARFDTAPRAQPPLVHLPPATLLAELAQAYVFVELCEAAMLAFAAENEARTRAMIAARESVERALGDLLQAYRIARQDEITADIVELAASGL
>NZ_CP008893.1|WP_004198321.1|1879076_1880102_-|alcohol-dehydrogenase-AdhP
MAQYMKAAVVHAFGEPLRIEEVPVPTPGAGQILVNVKASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGFVAAVGEGVRHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVNGSYAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVTDTRPGQWIAISGIGGLGHVAVQYAKAMGLHVVAVDVAPQKLELARKLGATFVVDASKDDPAAVIQKEIGGVHGVLVTAVSRGAFAQALGMVRRGGTVSLNGLPPGDFPLPIFSTVLNGITVRGSIVGTRRDLQESLDFAAEGLVRAHIHRDKLEHINGVFSALREGKVDGRIVLTGQ
>NZ_CP008893.1|WP_044363669.1|1878496_1879000_-|hypothetical-protein
MRGAGRASPSRARRYENVSKEPNTHREARAPVHRYRLQVRNMNGECRTYELRLSSLDDGYTLEIDEWLNFPDMHPGDVTPVHVSRPVQFAVPAHEFYRRRRAFRTELIESVAAALRAGEVVRMRDSPDEYPGGHAGNPWVNWIRADLRANPGGRPPPVGDDMQDLIH
>NZ_CP008893.1|WP_004524989.1|1877929_1878439_+|hypothetical-protein
MRRIYFLLPDADTARAIVDELLLKRIEWRHIHVVANDRVPLENLPEASIAQSSDLLPALARGTAAGGVTGALAGLAAIAFPPAGLTIAGGAVVAFAIAGAGFGAWVGTMIGVSVPNTRLKHFEDAVDNGELLMMIDVHRDRVEEIEALVKQHHPNAHLEGTDPTIPAFP
>NZ_CP008893.1|WP_004524990.1|1875823_1877389_-|methyl-accepting-chemotaxis-protein
MPTLSFRQKLWLPLVISLIALLLVSISSAWLSYQTRMEERRNDLTNVAHVGLSIVREYAALAQRGVLTDAQARKEALERLRSVRYGSDGYFIVIDSSPRMIMHPIKPDTVGKDLRHVADADGRHHYLTFASVAQSPQGGFVDYVFAHPNAHPAKAVDKLGYVIRYAPWDWIISTGAYIDDIQAAFAKSLCLSAGVFALLAALLALSVVYTNRGIERMIGGDPRIAAHMAGVIASGDLATPFATRREDRSSLMFAISQMRDALANAVAQIRASAGYVATTAGEIADSNMDLSSHTECQATALQQAASSMQRLTERVRDTADRARAASELAGSAARITDRGGDMVVRVVAAMNDIRAESRKMVDIIGVIEGIAFQTNILALNAAVEAARAGNEGRGFAVVASEVRVLAQRSASAAKDIRALIGRAAERVGNGAELVEATGATIGEAQHAICRVTGIVQDIAAAATDQSQGLEQINAAVSQMDSVTRRNATLVEHAAIAAQSLNEQSRCLQDAVAAFRTEALGC
>NZ_CP008893.1|WP_004529174.1|1873638_1875474_+|response-regulator
MHVEVFAQHPSCPGWHGEMARRIRAFDWSATELGPLERWPASLVAAVRTVLASPVPLVMLWGASGYMLYNDAYAAFAGGRHPYLLGQPVELGWPEVADFNRNVMRTCLAGGALSYRDKALVLLRNGRPEEVWMDLYYSPLAGDDGAPAGVLAVVVETTERVLAARHRDRAKAALHETNAELRRLTETLEQRVADAITERASIEEQLRQAQKMEAIGSLTGGIAHDFNNVLQVVSSNLQMLSAELGEDARAQRRIASAANAVARGAQLASHLLAFARRQPLAPAVLEPRGLIDGMREMLHRALGESVHVDADLRDDVWNVLADRHQFENALLNLAINARDAMRGEGTLKITACNIVLEAGRHARRNGLPPGEYVAFDIADNGVGMTPDILERVFEPFFTTKPDGQGTGLGLSMVFGFVKQSGGHTSIESAPGRGTTVRLLLPRCREAPAGEPAAQRRLPAEGGRETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIKGGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVLDAHASARRAHGARHAQADPRAKTAAARVQR
>NZ_CP008893.1|WP_004524993.1|1872364_1873489_+|ABC-transporter-permease
MRRLAIVYRLGVKELWSLVRDPILLVLIAYTFTASIYSAATARPDTLHMAPIAIIDEDASPLSARIASAFFPPQFALPRMVTLAEADRGMDAGDFTFALDIPPNFQRDVLAGRPAQIQLNVDATRMSQAFTGNGYVQQIVSGEIDDFARRYRANTAPPVDIAMHMRFNPNLDQTWFGSLMEVINNVTLLSMVLTGAALIREREHGTIEHLLVMPVTPGEIMLAKVWSMGLVVACAAAFSLAFVVRGALHVPIEGSVALFVIGMAIHLFATTSMGIFLATLVRSMPQFGMLLVLVLLPLQLLSGSLTPRESMPFAVQNIMLAAPTTHFVEIGQAILYRGAGIETVWRQFLILAVIGTALFLLSLKRFRKTIGQMA
>NZ_CP008893.1|WP_004537465.1|1869161_1872362_+|ATP-binding-cassette-domain-containing-protein
MSAPSVVRFSDVSLRYGKTVALERITLEIPAGLTIGLIGPDGVGKSSLLALAAGARALQTGAVDALGGDMRSRRHRERVCRRIAYMPQGLGKNLYPTLSVEENLQFFARLFGHDADERRRRIDALTRSTGLFAFLSRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLARAQFWDLIARIRSERPAMSVIVATAYMDEAQRFDWLIAMDAGRVLATGAPAELLARTGCDSLEAAFIALLPEDERRGHKPVTLEPLRADAQTGTAIEARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPATEGTAQLFGKTVDPKDINTRRRVGYMSQAFSLYSELTVRQNLVLHARLFGVPAAEIDARVDEMARRFGLADIYDMLPDSLPLGMRQRLSLAVAMVHKPELLILDEPTSGVDPVARDSFWQLMIDLARRDRVTIFISTHFMNEAQRCDRISLMHAGRVLASDAPAALVRARGAATLEEAFIGYLVDASAQEAQGGAGERPGAGERAAGESVAGRGAASDGDADGAHARPAAYANGAAQHRAPDADAAGTDVAAETGARDDARTAHAAGHSAGNDVRATVGSEVGSEVGSEAGLAAGAESGSEHAREPAADAGAAIDVEPGASAESATAAVAPARHAESAATSPRAGNAPAGTPFAAAPPSHAAPAEPPHRAFSAQRALSYMWREMLELRRDPVRATLALIGSLVLMCVIGIGISLDVEDLTYAVLDRDQTELSHDYALNLSGSRYFVERPPIADYAALDRRMRDGELSLAIEIPPNFARDVERGAPAQIGMWIDGAMPQRAETIRGYAIGMHTMWLADKARHRLGVTLAPRAEVVTRYRYNPDVKSLPAMIPAVMPLLLLMLPAMLTALAVVRERELGSILNLYVTPVTRTEFLIGKQVPYVVLAMLNFLLMTMLARIAFDVPVKGSFMTLLLAVLIFNVVATGIGLLASTFTRSQVAAIVMTIIGTMIPTVQFAGLLTPLSSLEGTGRLIGLVYPATYMLSISRGVFNKALSLHELYSQFWPLAACVPVILGATILLLKKQER
>NZ_CP008893.1|WP_004524995.1|1868091_1869165_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MIQVTRKQIVAAAAVVVVALGAYYGWTLLRHQGPGDGFASGNGRIEATEIDVATKLPGRIDAILVDEGDFVKAGQPLANMQIQVLRAQYDEATAQRQRALNTAAGVQSQVAQRKSDKAAAQAMVVLRESELDAAERRLARSQTLSREGASSLQELDDDRARARSAQAAVSAAAAQVAAAQAAIEATEAQLVAAHSAVTAADATVARVQADIDDSQLASPRDGRVQYRVAQPGEVLPAGGKVLNLVDLSDVYMTFFLPETVVGRVALGADARIILDAAPNYVIPATVSFVSSTAQFTPKTVETANERQKLMFRVKARIDRELLQKHLKLVKTGLPGVAWVRVDPSKPWPAQLMVKVPQ
>NZ_CP008893.1|WP_004187193.1|1883952_1884201_-|F0F1-ATP-synthase-subunit-C
MNNLIEVVSIAAAALAVSFGAIGPALAEGRAVGAAMDAIARQPDASGTVSRTLFVGLAMIETMAIYCLVVALLLLFANPFVK
>NZ_CP008893.1|WP_004187346.1|1884197_1884899_-|F0F1-ATP-synthase-subunit-A
MNASPLSTVPLFSVGPVGISAPVLATWAIMAVLVALALVARRRLSVDAPSRLQSVLELFVATVDAQIADTMQTPPARYRALIGTIFVLVFCANGASLVPGVEPPTAHLETDAALALVVLAATLYYGVRARGVRGYLATFAEPTWVMIPLNVVEQLTRTFSLIVRLFGNVMSGVFVIGIVLSLAGLFVPIPLMALDLLTGTVQAYIFMVLSMVFIGAAVSGDETSAPRRGQENT
>NZ_CP008893.1|WP_004524985.1|1884895_1885204_-|membrane-protein
MIEMWETARASFDGIAAAIGLALGFVAGACHFVSLGWNSRLFVAGRAGVALALQLARVALAVAVLVVLARAGFGMLVAGSAGFFAARAIAVRRAAALTGARR
>NZ_CP008893.1|WP_004530237.1|1885196_1885697_-|AtpZ/AtpI-family-protein
MMKRRPPEVKREAREARDDAARGDARHAGAGAAPDDPRGAARRDPPPGSRAARGGATHPAARAAEPAAPKPAADRVERAAHTAAARAARGARDPEPSLGRRLAQIGVLGWTIVAPTLAALALGRWLDRMFATRVFFSAPLLMLGAALGLWLAWRWMKAQQHGDRDD
>NZ_CP008893.1|WP_004188221.1|1885693_1886149_-|F0F1-ATP-synthase-subunit-epsilon
MGAELRVTIATPARVCVDDLPIVSLRAEDASGAFGIRAGHVDFVTLLRASVVRWRTADGATHYAALDGGVLRVTRGARIEIACRDAVLGESLAELEAVVRGVRATQLDEKRRARVDETRLHAQAVRRLLTYLRPEHAKDGVHAPLKPETLE
>NZ_CP008893.1|WP_004529183.1|1886138_1887725_-|F0F1-ATP-synthase-subunit-beta
MADPQATNGTGAACAERDASDVGDARDEGAGRVVAVRGAVIDVAFDGGALPALNEALTIPVDGAAPILAEVHAHLSDAAVRALALGPTGGLRRGAAVRATGGPIRVPVGDAVLGRLLSVTGAPGDDGAALAADVERRPIHRGAPLLAEQKSANALFATGIKVIDLLAPLAQGGKAAMFGGAGVGKTVLVMELIHAMVERYRGISVFAGIGERSREGHEMLLDMRGSGVLGRTVLVYGQMNEPPGARWRVPLTALAIAEYFRDERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIASVEGAAVTAIEAVYVPADDFTDPAVTAIAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVGEAHVEVAIEVRRVIEHYRELQDVIALLGIDELGADDRRLVGRARRLQRFLTQPFAVTEAFTGQAGASVEIADTIAGCRAILRGDCDDWRESSLYMVGTLDDARRKEAAAREADARREAAAAASGAGPGTTSDPASGSAEPQGARHGR
>NZ_CP008893.1|WP_004524981.1|1887696_1887954_+|hypothetical-protein
MPFVACGSATVAPVWLVRRWLHHNGARRPPADLGQETGNRQTKRGIAQSETIDASASGADTVRAASIVDSNQIPQTYAWLQWPCQ
>NZ_CP008893.1|WP_004188840.1|1888085_1889879_+|alpha/beta-fold-hydrolase
MDTRHAPESGAPDAPLPAHPPASYAPESPYRIFDLAKEASVAKLTSGLSPASLQLALADWLIHLAAAPGKRAELATLALRHAALLGQYLLEAATGRTPAAPAQPSPGDRRFRAGAWQLEPYRFWHQSFLLAEQWWRAATRDVPGVSPHHEDVVAFSARQMLDTFAPANYVATNPEIAQRTALTGGANLAQGVWNYLDDVRRLITKQPPAGAEQFELGRNLATTPGRVVFRNHLIELLQYSPTTPDVYAQPVLIVPAWIMKYYILDLSAHNSLIRYLVGEGHTVFCISWRNVDASDRDLSLDDYRKLGVMDALDTIGAIVPGEKIHATGYCLGGTLLSIAAAAMANTGDDRLASITLLAAQTDFAEPGELQLFIDDSEIHFLESMMWERGYLGAHQMAGSFQLLMSNDLIWSRVIHDYLLGERTPMIDLMAWNADSTRMPYRMHSEYLRHLFLDNDLATNRYVIDGQTVSVHNIRAPFFVVGTEHDHIAPWRSVYKIHYLSGSDVTFVLTAGGHNAGIVSEPGHAKRHYRMKMTAAAAPSISPDEWLAGATDFEGSWWPAWHAWLARHSSPQRVAPPPLGKPGAHTLGDAPGTYVFQK
>NZ_CP008893.1|WP_024431885.1|1889889_1891293_+|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase
MDREILQNRPFDSLAIGDSASLVRTASRDDIDLFAAMSGDVNPAHLDAAFAAHDLFGHVVVHGMWTGALVSAVLGTKLPGPGTIYLDQTLEFRHPVAPGDTITATVTVAEKRPEKRIVLLDTRCTNQDGHVVLRGTATVIAPDTPITWERVPGPEVAVRRHDRYETFVRDAREQPPLRTAIVHPCSPDALRAAIDARDANLIEPILIGPQAKIHAIADAAGVDLAGVPIEAVEHSHAAAARAVEMGGAGEVAALMKGSLHTDELLAAVIGPASRLRTERRISHVYAMDVPAYPKPLLITDAAINIAPTLEQKRDICQNAVDLLHVLGVERPRVAVLAAVETVNPKMPSTLDAAALTVMAARGQIAGAIVDGPLAFDNAVSAVAAMSKGIASPVAGDADVLLVPDLEAGNMLAKQLMYFAGADAAGLVLGARLPIILTSRADSLRVRIASAALAKLVAERTRAGALAS
>NZ_CP008893.1|WP_004540302.1|1891289_1892468_+|acetate/propionate-family-kinase
MSEPLLLTFNAGSSTLKIGLYSVANGEPAPLGRGKIDFNRAPLQFEYANGGEAHAVPLAAPVTDDLHAVLDEALGWIDAHLSVHELVSVGHRVVHGGDTFDGPVRIDERTLDAIAALVPLAPLHQPQSVRLIRALRHVRPHLPQVASFDTAFHRTQSDLVRRFALPRALFDAGIKRYGFHGLSYRYVAGRLRERHPSIARGKVVAAHLGSGASLCALDAGVSRDTSMGFSTLDGIPMATRCGALDAGVVLHLQKTLGRTLDDVEQMLYHRSGLLGVSGVSGDARALLADPSAGARDALELFAFRIAGETARLAATLGGLDALVFTAGIGEHQPQTRAAVCERLRWLGVELDAHANARNAETVSRDGSRVAVLVVPTDEEQVIARDAASVLHA

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Crispr_ID: NZ_CP008893_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008893_2

2305085-2305230

Orphan

Consensus_repeat	Method
GCAGAGGCGCCGCCGCCGGAATACCCGATCATCGGGATGCTCGATCGCCGAAG	PILER-CR
CGGAATGCCCGATCATCGGGATGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP008893_2

>merge|NZ_CP008893|2|2305085-2305230|PILER-CR,CRISPRCasFinder
TCGTCGGGATGCTCGATTGCCGCAGTCACCCTCCGCCGGGGCTCCGTCGTCGGAATGCCCGATCATCGGGATGCCTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGCCGGAATACCCGATCATCGGGATGCTCGATCGCCG

>NZ_CP008893|2|1|2305085-2305230|PILER-CR
TCGTCGGGATGCTCGATTGCCGCAGTCACCCTCCGCCGGGGCTCCGTCGTCGGAA	TGCCCGAT
CATCGGGATGCCTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGCCGGAAT	ACCCGATCA
TCGGGATGCTCGATCGCCG

>NZ_CP008893|2|2|2305135-2305220|CRISPRCasFinder
CGGAATGCCCGATCATCGGGATGC	CTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGC
CGGAATACCCGATCATCGGGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008893.1\|WP_004188282.1\|2292172_2293216_-\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NZ_CP008893.1\|WP_024431967.1\|2309197_2311009_+\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	unknown	unknown	gnl\|CDD\|225098
NZ_CP008893.1\|WP_004529487.1\|2301650_2303924_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|369639
NZ_CP008893.1\|WP_024431968.1\|2312553_2314401_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223732
NZ_CP008893.1\|WP_004200705.1\|2315770_2316424_+\|SagB/ThcOx-family-dehydrogenase	unknown	unknown	gnl\|CDD\|380318
NZ_CP008893.1\|WP_024431966.1\|2307281_2309123_+\|ribonucleotide-reductase-like-protein	unknown	unknown	gnl\|CDD\|180772
NZ_CP008893.1\|WP_004187469.1\|2304056_2304452_-\|conjugal-transfer-protein-TraR	unknown	unknown	gnl\|CDD\|224648
NZ_CP008893.1\|WP_004529483.1\|2295706_2296147_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176863
NZ_CP008893.1\|WP_004200700.1\|2296448_2297564_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378454
NZ_CP008893.1\|WP_004205322.1\|2297861_2298797_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NZ_CP008893.1\|WP_004530669.1\|2305806_2307078_+\|polyhydroxyalkanoate-depolymerase	unknown	unknown	gnl\|CDD\|130908
NZ_CP008893.1\|WP_004536946.1\|2299462_2301361_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_CP008893.1\|WP_004529497.1\|2314862_2315312_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341411
NZ_CP008893.1\|WP_004523279.1\|2311525_2312557_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236122
NZ_CP008893.1\|WP_009935464.1\|2314529_2314859_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008893.1\|WP_004529482.1\|2295132_2295735_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008893.1\|WP_004529485.1\|2298812_2299403_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008893.1\|WP_004523292.1\|2293221_2294454_-\|3-methyl-2-oxobutanoate-dehydrogenase-(2-methylpropanoyl-transferring)-subunit-alpha	unknown	unknown	gnl\|CDD\|223997
NZ_CP008893.1\|WP_004529498.1\|2316493_2316928_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NZ_CP008893.1\|WP_004552282.1\|2317333_2318473_-\|porin	unknown	unknown	gnl\|CDD\|238208

Protein	Function_ID	Function_description	E-value
NZ_CP008893.1\|WP_004188282.1\|2292172_2293216_-\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	0
NZ_CP008893.1\|WP_024431967.1\|2309197_2311009_+\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	gnl\|CDD\|225098	COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown].	3.02509e-75
NZ_CP008893.1\|WP_004529487.1\|2301650_2303924_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|369639	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	7.5874e-57
NZ_CP008893.1\|WP_024431968.1\|2312553_2314401_+\|STAS-domain-containing-protein	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	2.34353e-106
NZ_CP008893.1\|WP_004200705.1\|2315770_2316424_+\|SagB/ThcOx-family-dehydrogenase	gnl\|CDD\|380318	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC. This family is the oxidase domain of NRPS (non-ribosomal peptide synthetase) and other systems that modify polypeptides by cyclizing a thioester to form a ring. These include EpoB, part of the epothilone biosynthesis pathway; TubD, part of the tubulysin biosynthesis pathway, MtsD, part of the myxothiozol biosynthesis pathway; IndC, part of the indigoidine biosynthesis pathway and TfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.	6.31252e-20
NZ_CP008893.1\|WP_024431966.1\|2307281_2309123_+\|ribonucleotide-reductase-like-protein	gnl\|CDD\|180772	PRK06948, PRK06948, ribonucleotide reductase-like protein; Provisional.	0
NZ_CP008893.1\|WP_004187469.1\|2304056_2304452_-\|conjugal-transfer-protein-TraR	gnl\|CDD\|224648	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms].	1.7869e-14
NZ_CP008893.1\|WP_004205322.1\|2297861_2298797_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.67997e-62
NZ_CP008893.1\|WP_004200700.1\|2296448_2297564_-\|hypothetical-protein	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	2.16274e-11
NZ_CP008893.1\|WP_004529483.1\|2295706_2296147_+\|SRPBCC-family-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	1.19676e-25
NZ_CP008893.1\|WP_004530669.1\|2305806_2307078_+\|polyhydroxyalkanoate-depolymerase	gnl\|CDD\|130908	TIGR01849, unnamed_protein_product, polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some [Fatty acid and phospholipid metabolism, Degradation].	4.16837e-113
NZ_CP008893.1\|WP_004536946.1\|2299462_2301361_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	4.48837e-35
NZ_CP008893.1\|WP_004529497.1\|2314862_2315312_-\|CBS-domain-containing-protein	gnl\|CDD\|341411	cd17775, CBS_pair_bact_arch, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and archaea. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	4.75995e-51
NZ_CP008893.1\|WP_004523279.1\|2311525_2312557_+\|hypothetical-protein	gnl\|CDD\|236122	PRK07877, PRK07877, Rv1355c family protein.	3.7258e-30
NZ_CP008893.1\|WP_004523292.1\|2293221_2294454_-\|3-methyl-2-oxobutanoate-dehydrogenase-(2-methylpropanoyl-transferring)-subunit-alpha	gnl\|CDD\|223997	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion].	5.32689e-143
NZ_CP008893.1\|WP_004529498.1\|2316493_2316928_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	9.00264e-33
NZ_CP008893.1\|WP_004552282.1\|2317333_2318473_-\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	3.82792e-55

>NZ_CP008893.1|WP_004187469.1|2304056_2304452_-|conjugal-transfer-protein-TraR
MAAFDEHQLQVLGALLRACRQALQADVRAGERQRADEPYANLAGPAPDEGDEANADLFVDVDHALLGMKLAELRDVDAALQRIARRDYGCCADCGQPIAYERLLARPTALRCAPCQRAHERRFATQPRPSL
>NZ_CP008893.1|WP_004529487.1|2301650_2303924_-|FAD-dependent-oxidoreductase
MREFDYLLVGGGIASVTAARTLRGEDASASIAILCGEPVLPYQRPPLSQEWLMGAVQPASITLHDAAFYAAQRIDIALGVRAEQLDRAKRIVRTSSGATFRYGKLLIATGASAKAPALPGFGLDGVHVLHTFAQAQALKDAAAHARRATVLGGGFLGVEIAATLQALGLQVTLVERAPGVMPSLRAPALGGHFEALCRARGIDVLTRCEVRRVLGAQCVEAVETSDGGTRPCDLFVAAVGVTPNCGWLDGSGLALGDGVEVDAFLQTADPDVFAAGDVAHFDDPIFGVRRRIEHWDNAVRQGRIAARNMLGHRLPYRDVSIFYGSVFGLSYNLLGYPVGATETIERGAFDEASYMQLYLADDVLRAAFTIDRPAVEIAALNDAIRLHVNVAAHKTKLSDPNYPLDKLPVQTILILQGGGALGAFECGAVKALEQHGVRPDVISAVSIGAFNGAIVASHPKGATKALEAFWRELSIALPLPYESQWREAWLSSYVLSFGVPNFLKPQWSQLGCDADRLRAKWTSFFDATAIEQLIARYVDFDSLGMSPTRLLIGAVDVETGEPRIFDSYVDRLSPAHVLASGSLPPGMPWTVVDGRPYWDGGVVSNSPLDLVIARCGQIGGRVFIVDLFSGSKALPTNLVEVMLRREEIAYMDRVRNDLRFEEYASDFRDLVDGILAHVDAPSANEIRQQPLYIRLMGNRAAIDIARITLNREGRLSFIEDYDFSSDAIAQLQQQGYDAALVALANGRSRRRRGRRRA
>NZ_CP008893.1|WP_004536946.1|2299462_2301361_+|GMC-family-oxidoreductase
MLGATRSTLWGSRERPRIAAARAPGAVASRMREEARECAGPRGAGRAPHRATAAGGKTGRRTVRAPSRARAGSNNQKVNRMKQQSYDYDYVVVGSGFGGSVSALRLSEKGYRVLVIEQGRRWTPENLPESTWNLSRWQWRPALGLRGFFSMRFFRHVVVLHGNAVGGGSITYANTLLVPPDKVWREGTWAGLEDWERVMPAHYATAKRMLGVVTNRRMDAADFRLKDMAKLIGVEKSFYPTEVGVFFGDDADAPGTRYADPYFGGAGPERTSCIGCGGCMVGCRHGAKNTLDRNYLYLAERLGAQVREQTKVVDVRPLDARADGAAGYAVEAVSLAAGARGAKSRLTCRGVVFAASSLGTQDLLMRLKEKGSLPRLSDALGKRVRTNAESLIGVRFPKSRVDLSKGVAIGSGIYIDEHTHIEATRYPSGSDTMGLLTTVLTRGAPGGLRVLVWLGALAKLVLTRPLSAWRMIDPRGFARETMIFLCMQTLEGHLTMRLKRRWFWPFSKQLATSGAKIPAYIPAANDFAQKAARALGGVPMTSLTEILLNVPMTAHCMGGAAMARDARDGVCDGRSRVFGYRNMYVCDGSVLGANLGVNPSLTITALAEHAMSHVPAAREQRWDSTAETPVAA
>NZ_CP008893.1|WP_004529485.1|2298812_2299403_+|hypothetical-protein
MCRARGIGRQARGNATAPSPIAAAAIGARPRSAPRGPRISDAGRLAAARSAFAIHQERRKRNADRHGTHQYDADSRAAPREAPRFEHEPKKQRDAAQHEVDRDRAAREIRERIEHKARPDVRRAERPISQDVAQAPIGAAGAISPSTAHSIFLEIGLALAGRPIQVRRNRAPFTHGTPRRRPARGPTARTASPAPV
>NZ_CP008893.1|WP_004205322.1|2297861_2298797_+|LysR-family-transcriptional-regulator
MIQNLRQLDLNLLLVFDALMQEQNLSRAAIRLHMSQPAVSNALTRLRQQLGEPLFTRTARGMTPTAQARTLYEPVRQALYLLQIGLGPQADFEPDTHHLFKLSMNDYGQTVLLPDLLAHIKSRAPNVMLSVQSDDAGSIPAQLTTGTLDLAIDYLHFDNPELCYEPLHEEHLVVIGRAGHPAFAGGLALRGYEESGHVSIQPRDRRGSPLEIVLGSARVRRVVHLQVPHYLTIPALVAKSDLLGTIPRRLAERFADVYALQIAPLPIDIAPIQVSLIWHRQQDAQPGLRWLREQVVLTHRAIIGCGEHAPA
>NZ_CP008893.1|WP_004200700.1|2296448_2297564_-|hypothetical-protein
MTQDVTVFRARYRASVHPRYNAWLHGGFVLAYGCAAIAFFLKDVARVSAVQWASVPAAFLLFNWLEFTVHRHVGHVKRRFGAMFYRRHTGDHHSFFANEQIAYREARDWRVILFPAWLIVVFSLGLFALHAVLGRFDANVAGLFASTMLGGYLLYECVHACEHLPDAHPLAKWPWIRQMRVLHRVHHRDALMRSCNFDVIWPLMDWLHGTLRWSEAPGADMSTRMRHEIDIACAGADVLAYASDASRWPEWHPSSLRVDGPAGSLAAGSRFDEDVRAAGRVDRLHWDVVRNEPGVMWQARAANTAGSLRILLTYECSGGPRGARFVRTLHYHSPNPLLRLANALVMRGRVERESAYSLTLLKRRLEAARDA
>NZ_CP008893.1|WP_004529483.1|2295706_2296147_+|SRPBCC-family-protein
MKQQRIEIAEEFDAPVHQVFRFFSEHENLKSIFSPAKIRRISDGEPARNGVGSAREMRVPGAPPFVETVTAYQENELIEYRITRGSPLRDHLGVMRFVPIDEHRTYFHYVITFEGKVPFVAPVVRHVLEGSIRRGLGKVATRRLWG
>NZ_CP008893.1|WP_004529482.1|2295132_2295735_+|hypothetical-protein
MNSILAPDNAPPASANRTSPLMSALARAVLTAPLPGSDRAAEASTRVSTMRAQSASAIRIRSCRRSRSSRHGLPESPACRRKSPARPRSRRAPRPLADHTRMRFSPPRLGVRTARPPPAGRSKPARGASAIRLRVQRRSSRLTMTLINVIVIARAPQTAIVAHRGIGPRAIGRLTARRRAARPSTLETRPSYETATHRNR
>NZ_CP008893.1|WP_004523292.1|2293221_2294454_-|3-methyl-2-oxobutanoate-dehydrogenase-(2-methylpropanoyl-transferring)-subunit-alpha
MSQYGPLRLHVPEPTGRPGCKTDFSYLRLSPAGKVRKPPIDVAPADTSDLAYGLVRVLDEHGRAVGPWAPDLDPDILRKGIRAMLKTRIFDARMQIAQRQKKISFYMQCLGEEAIAVAHTLALERGDMCFPTYRQQGILMVREYPLVDMMCQLMSNERDPLKGRQLPVMYSTRDAGFFSISGNLATQFIQAVGWAMASAIKGDTRIASAWIGDGATAEADFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGEGATFAGRGVGCGIASLRVDGNDFLAVYAASRWAAERARRNLGPTLIEWVTYRAGPHSTSDDPTKYRPGDDWTNFPLGDPLERLKRHMIGIGVWSEQDHEDTKAALEAEVLAAQKEAERYGTLADEHVPNVASIFEDVYKEMPAHLRRQRQQLGV
>NZ_CP008893.1|WP_004188282.1|2292172_2293216_-|alpha-ketoacid-dehydrogenase-subunit-beta
MTTASKEGPAASPMTMIQALRSAMDVMLERDGNVVVFGQDVGYFGGVFRCTEGLQNKYGKSRVFDAPINEGGIVGAAVGMGAYGLRPVCEIQFADYFYPASDQIVSEAARLRYRSAAEFIAPLTIRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLISAIENDDPVIFLEPKRLYNGPFDGHHERPVTPWSKHPASLVPDGYYTVPLDSAAIVRAGGDVTVLTYGTTVHVSLAAAEETGIDAEVIDLRSLWPLDLDTIVESVRRTGRCVVVHEATRTCGFGAELIALVQEHCFHWLEAPVERVTGWDTPYPHAQEWAYFPGPNRVGDALRRAMEN
>NZ_CP008893.1|WP_004530669.1|2305806_2307078_+|polyhydroxyalkanoate-depolymerase
MLYAWLEAQREFFRACQPWAGAAQRAGAGAGARPAGWPTWGPMARAADAVPAPPPFAIASIEIDGAAVPVDECVVDDTPFCALRKFSRRLRGDAAARPAVFLCTPLAGHHAVMLRETVETILATRDVYVTDWRNARDVPPEAGAFGLDDYVCTLERFVAGAAGDGLHMMAVCQATVPALAAVALLAARDVHVTSVALLGGPVDTRSHPTLIDRFALEHDLDWFRRTAIDIVPPPYAGAGRRVYPGFIQHAAIIVAHPQRRASLESRYWAAWMTGDFAAAARCLREMNEYGAVLDMTERYFLDTIRVIFHERLLAQGRWSIGRRLVAPRRLTRTALCTIEGGRDDIAGAGQTHAAHALCDAVPDAVRERITEPDCDHYDLFLGPRWRRTIHPALDAFWTRAEAARAAAGEPRPTAERAERRIAH
>NZ_CP008893.1|WP_024431966.1|2307281_2309123_+|ribonucleotide-reductase-like-protein
MRTINKRTRAIAHADSFVRMIGDMDDQPICDAVFADRYALPGEHSRAQACARVARALALAEPMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHTAPPRAAPGGALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIGATSPCGAQPLPPYGSAMLGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAYPLCDRHAHLDALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGAPGMRAENHAHRLFRSLRGERAALPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV
>NZ_CP008893.1|WP_024431967.1|2309197_2311009_+|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein
MTTGAVAARRLPRRGTARGRRAPSRAFTIHGGDEMRRSRPPKPAKPAAVRRRPHGAARAHAIRGNGPQRRAVRERAARRLSRDIDAALRRASTYPHPAGPIVRIETHLSVVYLVGRFAYKRLKPFDFGFANFSELAARRRACEAELALNRPLAAPIYLAAGPLVRRARGLRLFGAGTAVDHVVRMRRFDERMLFSRLLARGALDAADIDAAATRLAAYHLHAPRDIPRRAYGSARELRRQLDDMLAPLERALGAALPASLRAWCVRRCDELAAHLDARRADGYVRACHGDLHLNNVVKRGRDALMFDCIDFDDALRWIDVINDLSFLLMDLHAHDRAALAHRLLNRWLDETGDFAGLAALPLYVAYRALVRALVATMRAGGDAAARAARIERARRYVDVAAHAARARRPCLLLCHGYSGSGKSVASRALADVSGAIRLSSDSERKRARPFAAVDARPLPASAYTPQQIDAQYERLRALARDVLRAGYTALVDATFLSHARRARFFALARELGVPVYVLDFHASRACLERRVDARAAARDDHSDAGAAVLATQRASADPLDADERARTIGFDTDVPLATLRSAGYWRPVLDVLDAARVDAQATR
>NZ_CP008893.1|WP_004523279.1|2311525_2312557_+|hypothetical-protein
METSPLKTTTPEAIPPFDPSASVEDKLRLAIHYAILAPSSHNTQPWRFMVGDGSVMLCADRLRALSVVDPYDRELLISCGAALLNLRVALSRFGFAYVIDMFPSPSDPDVIALVRLDPHGYHDESLVPLFDAILERVTTRTPYANEAVPCDVQRALVDAGAAEGAEIACVDAPHALDEIAELIADADRLQFADPRFRRELANWVHPRRHDDGMPAFAAGVPALLDFATPVVASAIRTFDLGGGLAAMHHKLVDGSPLIVGISTASDDRDAWVAAGQALERVLLVAAAAGLTASYLNQPIEIDALRERLRPLLHVDAHPQLLLRIGRGPVVAHAPRRPLMDVVS
>NZ_CP008893.1|WP_024431968.1|2312553_2314401_+|STAS-domain-containing-protein
MTERERAARGRNDARRGGGDSGGDDEAWRRWLPGIATLRAYRRAWLARDLYAGVALTAVLVPVGMSYAQAAGLPVIAGLNASIAALVGYAIFGPSRILVLGPDSALAALIAGAIAPLAHGEPAHAVALAAALALMSGGFCVLAGLLKLGFVTDLLSKPIQYGYLNGLALTLIASQLPSLLGTVPLGGTFVDQVASLAATVAQGRIDFASLALGGGCLAGIALLRRVAPAWPGMLIAVAGASIVAAWLGAAPDAGGAHAHVAYAHVAYAHVANAHVALVGSLAGTLPPLGLPSISLADASRLIAGALAIAMVSVADISVLSHVFAQHDGSETDRNQELCALGAANLLAGMLRGCAVSSSASRTPVALAAGARTQLTSLVAAACIALLLIAPTLLARVPLAALAAVVVYSANALVDVRAIVRLYRVRRGECAVSVLCFAGVVLLGVVPGILLAVGLSLLSFVWRAWHPYDAVLGRVEGMHGYHDVSRHPGATLTRGLVAFRWDAPLFHANATIFRDHVRDAIAEAGAPVRCVVIAAEPITDVDVTAADMLATLRDELAARRIALVFAEMKGPVKDRLRTYGLFEKIGADHFFPTVTDAIEHFTRMRKDVATARRARR
>NZ_CP008893.1|WP_009935464.1|2314529_2314859_-|hypothetical-protein
MLSSRLVSSRLAPCCVYIDIQGEGDVDVDAEGNGNGNIDVIDSKRCEPSGVEPVERAVRRPRYRVQSGCLSGIHRNGIVMPALMPPTNRFDRLRASAVIVDRTKPRRSP
>NZ_CP008893.1|WP_004529497.1|2314862_2315312_-|CBS-domain-containing-protein
MNAAEICTREVVACRRTDTVLDAAHLMRDRHVGDLIVVDDAGHAHAPVGMLTDRDIVLSLIAKGVDPAALFVGEIMSAPAAVVHEHDSLWTIAQRMRLTGVRRMPVVNADGALVGMVSVDDLLASVAALFDEIASISRRQIHFEEKARD
>NZ_CP008893.1|WP_004200705.1|2315770_2316424_+|SagB/ThcOx-family-dehydrogenase
MSDPELLTYQPIAVALPGPAEAGAPAVIDLPPPDLGAGLPLMSALSLRASTREFSSAALAPTTLGELLWAADGVNRPTTGGRTAPSAHAFNEIDIYAALPDGVYRYDAALHRLLLKHAVDARNLTGYQDFVGAAPLDLIYVVRMSRLLSMPKPLRETFSAVAAGAIAQNVALYCASTGLGCVVRGWINHRLLAEALSLNEDELPILAQTVGKPAAHP
>NZ_CP008893.1|WP_004529498.1|2316493_2316928_-|Hsp20/alpha-crystallin-family-protein
MSNVTRYDPFSLEPVSDLFQGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGVDKNDINVQIDGNTVSISAKVERNKELKEGERVIRRERYSGEFARTFSLANELDRDAASAQYQDGVLSLTLPKKASSEKKKLTIG
>NZ_CP008893.1|WP_004552282.1|2317333_2318473_-|porin
MGDVMNAKSIAAAALAVAQAGLAHAQSSVTLYGALDAGVLWQNTSAASFSPTAPNTGAVVRFKDGGVYSSLWGIKGTEDLGGGYRVNFRLQGAFDGGTGKFGLSDAPGAVAAFNQIATLGVSGPFGTFNAGRQIVPMIYAMADTDVRAARFFGSVLTAWLGLNTAAGWPGNSTNAPIGALYDSDALVYQSPAFGGASLALEYAPGGVPGGVQRGARASIVLKYASNALNLAAVYYNGHDTNPAPGASATGLDNNRFVYVGAQYKLKDVAVSASYGNGRNPARGDRVNLDMFAFGLGYRVSPFFRVSSGVYYLKDRNRSANRSTSIVLGADYELSKHTTLYAQGGRVDNRGTMAQMLAYGQPVAPGLATTAAMLGMRHSF

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Crispr_ID: NZ_CP008893_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008893_3

2521001-2521065

Orphan

Consensus_repeat	Method
GGGCAGGATGCCACCGCGTCGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008893_3

>merge|NZ_CP008893|3|2521001-2521065|CRISPRCasFinder
GGTCAGGATGCCACCGCGTCGGGCACATCAAGCACGGCAACGGGGCAGGATGCCGCCGCGTCGGG

>NZ_CP008893|3|3|2521001-2521065|CRISPRCasFinder
GGTCAGGATGCCACCGCGTCGGG	CACATCAAGCACGGCAACG
GGGCAGGATGCCGCCGCGTCGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008893.1\|WP_154220220.1\|2518595_2518955_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008893.1\|WP_004531587.1\|2512036_2512729_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008893.1\|WP_004523721.1\|2510799_2511219_-\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|223509
NZ_CP008893.1\|WP_004529637.1\|2528892_2529465_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP008893.1\|WP_045606153.1\|2526155_2528900_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NZ_CP008893.1\|WP_004523716.1\|2514048_2515644_-\|cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|238833
NZ_CP008893.1\|WP_004537437.1\|2510535_2510820_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008893.1\|WP_004537686.1\|2508453_2510112_+\|DUF2875-family-protein	unknown	unknown	gnl\|CDD\|288282
NZ_CP008893.1\|WP_004523722.1\|2510121_2510385_+\|PAAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|269829
NZ_CP008893.1\|WP_004529630.1\|2521807_2523259_-\|PhoPQ-regulated-protein	unknown	unknown	gnl\|CDD\|226737
NZ_CP008893.1\|WP_011326446.1\|2523556_2524111_-\|membrane-protein	unknown	unknown	gnl\|CDD\|284781
NZ_CP008893.1\|WP_024431978.1\|2513314_2514052_-\|DUF2244-domain-containing-protein	unknown	unknown	gnl\|CDD\|378350
NZ_CP008893.1\|WP_004523720.1\|2511238_2511565_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP008893.1\|WP_004529635.1\|2525320_2526043_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|236634
NZ_CP008893.1\|WP_004531579.1\|2529496_2530186_+\|DotU-family-type-IV/VI-secretion-system-protein	unknown	unknown	gnl\|CDD\|378275
NZ_CP008893.1\|WP_004523706.1\|2524695_2525241_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP008893.1\|WP_004523700.1\|2532254_2532794_+\|type-VI-secretion-system-contractile-sheath-small-subunit	unknown	unknown	gnl\|CDD\|226047
NZ_CP008893.1\|WP_004523708.1\|2523330_2523546_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008893.1\|WP_004531578.1\|2530188_2531865_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP008893.1\|WP_024431977.1\|2516793_2518251_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP008893.1\|WP_004523722.1\|2510121_2510385_+\|PAAR-domain-containing-protein	gnl\|CDD\|269829	cd14744, PAAR_CT_2, proline-alanine-alanine-arginine (PAAR) domain with uncharacterized C-terminal extension. This domain is found in the PAAR (proline-alanine-alanine-arginine) repeat family of mostly beta- and gamma-proteobacteria, and forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS). Most members contain C-terminal domain extensions corresponding to several uncharacterized domains such as S-type pyocin, DUF2235, DUF2345 and cytotoxic proteins. However, these terminal domains are exposed to solution, and do not distort the binding site of VgrG. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes.	9.18656e-23
NZ_CP008893.1\|WP_004523721.1\|2510799_2511219_-\|YjbQ-family-protein	gnl\|CDD\|223509	COG0432, COG0432, Uncharacterized conserved protein [Function unknown].	1.018e-53
NZ_CP008893.1\|WP_004529637.1\|2528892_2529465_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	2.61685e-22
NZ_CP008893.1\|WP_045606153.1\|2526155_2528900_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP008893.1\|WP_004523716.1\|2514048_2515644_-\|cytochrome-c-oxidase-subunit-I	gnl\|CDD\|238833	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.	0
NZ_CP008893.1\|WP_004537686.1\|2508453_2510112_+\|DUF2875-family-protein	gnl\|CDD\|288282	pfam11394, DUF2875, Protein of unknown function (DUF2875). This family of proteins with unknown function appear to be restricted to Proteobacteria.	0
NZ_CP008893.1\|WP_004523706.1\|2524695_2525241_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	3.16404e-21
NZ_CP008893.1\|WP_004529630.1\|2521807_2523259_-\|PhoPQ-regulated-protein	gnl\|CDD\|226737	COG4287, PqaA, PhoPQ-activated pathogenicity-related protein [General function prediction only].	0
NZ_CP008893.1\|WP_011326446.1\|2523556_2524111_-\|membrane-protein	gnl\|CDD\|284781	pfam07437, YfaZ, YfaZ precursor. This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.	8.98696e-13
NZ_CP008893.1\|WP_024431978.1\|2513314_2514052_-\|DUF2244-domain-containing-protein	gnl\|CDD\|378350	pfam10003, DUF2244, Integral membrane protein (DUF2244). This domain, found in various bacterial hypothetical and putative membrane proteins, has no known function.	8.29093e-37
NZ_CP008893.1\|WP_004523720.1\|2511238_2511565_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	5.63925e-18
NZ_CP008893.1\|WP_004529635.1\|2525320_2526043_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|236634	PRK09926, PRK09926, fimbrial chaperone.	6.76191e-96
NZ_CP008893.1\|WP_004531579.1\|2529496_2530186_+\|DotU-family-type-IV/VI-secretion-system-protein	gnl\|CDD\|378275	pfam09850, DotU, Type VI secretion system protein DotU. DotU is a family of Gram-negative bacterial proteins that form part of the membrane-joining complex of the type VI secretion system. DotU binds tightly to IcmF and together they are tethered to the inner membrane at one end and the peptidoglycan layer at the other; they interact with Lip1 which then tethers the peptidoglycan layer to the outer membrane.	1.02221e-28
NZ_CP008893.1\|WP_004523700.1\|2532254_2532794_+\|type-VI-secretion-system-contractile-sheath-small-subunit	gnl\|CDD\|226047	COG3516, COG3516, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	7.24528e-84
NZ_CP008893.1\|WP_004531578.1\|2530188_2531865_+\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	7.01518e-35

>NZ_CP008893.1|WP_154220220.1|2518595_2518955_-|hypothetical-protein
MMNTPLSTRSTNFNSLVHRLTARLHALVTTRNSSGLLAWKTRDELERLFPAGTPMTHVGWRLGPPHQAVEYPGGCVTWIFLSNGQWLREPGRLLMWSAQTRSLRLTFDREQILTQMQLD
>NZ_CP008893.1|WP_024431977.1|2516793_2518251_-|hypothetical-protein
MPIRQTHIWIFGFVIACVLAMSGPLTYTFENTFQQTVDIDRKKQGTVAEATAFDARSAEQPSASDADRMHELPRIDAARSPTDHFDELPIHLAAFGGGEPSPSGPLPPGPLPDTSFAPFPFQHGFDTAIHAGPPIPAPPESTLARTDAPPRDETPFEPGMPQPSETVDTQLSFYADMVAQAIERTAYDSIALAKLDSDTTAPPDMTPERHDALANMNAPMFYADMLTASIHVPPSNDRTLSVPSLLTHQAIGIAWMELFARELPATATQAAPTRHAVSFAATLQAEPFDLAQWSEPDEAHSDGPPLELDGQRTVAPPYPRADTLPPGTRPTYTDSPPDTGIVQAAAMLATGFESAGKHAATLRGQPPGADECRMGARAIGLGRSGMERLAIEQFVSSARAAYDCARARIHGRASAFANAPASAQPSNHLDANGDPMRIAFLPRLASEPFQEAFSIPGDTAGIASACAVADDQTGHRNRMAAANSD
>NZ_CP008893.1|WP_004523716.1|2514048_2515644_-|cytochrome-c-oxidase-subunit-I
MSEISTNMPHVRDAAHHAPTGWRRWLFATNHKDIGTLYLLFSIVNLMIGGVMALMIRAELFEPGLQLMRPEFFNQLSTEHGFIMIFGAIMPAFVGLANWMIPLQIGASDMAFARMNNFSFWLLPVSSALLIGSFFVPGGAPAAGWTMYAPLSTQMGPGMDLSIFAIHIAGASSIMGAINIVVTVVNMRAPGLTLMKMPMFAWTWIITSFLLIAIMPVLAGAVTMVLFDRHFGTSFFNASGGGDPVLYQHIFWYFGHPEVYVMILPGFGMISQVIPAFSRKPLFGYASMVYATASIGILSFMVWAHHMFVTGMPVAGQLFFMYATMTIAVPTGVKVFNWVATMWRGSLTFETPMLFSIGFIFVFLIGGLTGVTLAMAPLNVALHGTYYIIAHFHYVMVAASLFSIYAGWYFWVPKWTGYFYDERRGRIHFWGSMISFNVTFFPMHFLGLAGMPRRYADYPAQFTDFNQIATIGAFAFGLMQVYFLFWVALPTYLGKTRRCVDAKPWDGAQGLEWTLPSPAPYHSFETPPAVK
>NZ_CP008893.1|WP_024431978.1|2513314_2514052_-|DUF2244-domain-containing-protein
MTARPRTRRHARAHADAGANANANANADADADADADVNMKADARCDTRKHAQRHCTPAFVAHDPRLMTRDVAENRRVWLLKRNCALSPRQSLISMGLLAALTLAIAMPFAIAGAWAVFACAIGEIAAMCGCFLLYARHAVDYDCVALTEQRLEVVQCDGAQLRRYDWNPLWVAVDLDAAHARDPTIRIRHGSETVLVGRHVTLARRRHVAGELNAALAASAGDFGDTDFAPSVRQRQPEPLAAHR
>NZ_CP008893.1|WP_004531587.1|2512036_2512729_+|hypothetical-protein
MNSQHARFIRPVLGTLCIVSLAALSGCRGDACFGFDGCFDDGGVQTVTLSGTAATGPALASATVNVDCARGSVATLSDGGGHYSVTFDAALPCAITVTSGGTSLHSLAYAGGTFNTTPQTELMLVYLAAQLGTSPARLIGDLPNSSRLQQALENQTNVQAAQTAVVANLQQRYAVMFAVPEFLTTPFFVGQPGVDGDLGALANAGAIDANGMPDALAVSLLQQAGAAHPL
>NZ_CP008893.1|WP_004523720.1|2511238_2511565_-|thioredoxin-family-protein
MHSSQAYTADAPTRAEVDALAGATVIEFGANWCGICAGAQPAIRDAFSVHADVRHLKIEDGPGRPLGRSFGIKLWPTLVFLRDGTEVARVVRPTHAEQIETIGFAALV
>NZ_CP008893.1|WP_004523721.1|2510799_2511219_-|YjbQ-family-protein
MQQSIQHITVEARGRGLVEFTPQVRAFVEVQSVSTGLLTVFCRHTSASLLIQENADPSVQRDIERYFAALAPEDDARYEHDTEGADDMPAHLRTALTQVQLSIPVEHGRMVLGTWQGIYLFEHRRAPHRRDVVLHLIGE
>NZ_CP008893.1|WP_004537437.1|2510535_2510820_+|hypothetical-protein
MSGLRTPPFPAKVDEIGAPRRPVGEERVPAAAHDRALREDVRGHRCRSASQTRPRRTAATDDQEAEGIEPRTPRRVARGAAHAMLAARSLADQM
>NZ_CP008893.1|WP_004523722.1|2510121_2510385_+|PAAR-domain-containing-protein
MRGVIRIGDSTSHGGRVETGREGSTVMGRAVACVGDRCTCPMNGHEHCVIVEGDEDVRIEGRAVAFDGHRTSCGATLVSSIPTSGRV
>NZ_CP008893.1|WP_004537686.1|2508453_2510112_+|DUF2875-family-protein
MKPRIWPFAAVFVLIALGWTFVVMAQHYHYWQATGQEMPGMAASIRNGVLVALGVVAAVFTASYVWLHRAPHESTPATMSSASAAVDTHAATNYGNNGVPALLGQTGANYVLEVRGLGLVTGHETNEEIWKAIQAKADNHSTYMSQNPADYPANKDERMTDLGLSTRISFKFGARNSVEYWPVPVFIWEPPKDRRFGRPGAALDGIRQEASLGVTLLLWQEDANTDDGASIIEKLFAFFDSHPDVPEAVIYTLDGSMKRWLNETPGYIDTFEQSNIPSMPDSMVAMLVSRSDRVDRLIRPYAVEQTENVNNGTTDYDITRLWNFFWKVNQDRGPDSFTAHYEADEKRAGVNTPMSAGFVTSAWWQTKLPDFWKTISNKGPGEFKPTPYIPVRWTTWQVKQFDNAPLLGYLHRPIDVKLADAHGKPLKTAQQAQALKAGWQQAVDTLPTGETPKRIFYDTTGDRAWVAPINQALAQSGPSAPSLDDVKEGYDIGRRIGNTGISSPLVQIGLGLIASYHEGGASATIHRRPNGTATIVMVSPPTHKQPDVNPFR
>NZ_CP008893.1|WP_004529630.1|2521807_2523259_-|PhoPQ-regulated-protein
MLSLAYPRAEAAPIAFPCPIDARRDLTDTLACYRQTVENQPLNYTMTSIVQLPGIEQRTYRLVSQSWSPDQLVRPDTWVHEVALYIPQDALPRRALVIANDGTRHPGEGETPRTPNDFLPDTLADIARSTRTAVISVSDVPNQLLSYADDGKPKAEDDSVARSWTLFMQSPHTRGAMPLHVPMAASIWRAMSLAERELTSLGIHRFVVSGISKRAWTTWLALIGDQRVDAIAPFAIDLLSTRAALENMYRSYGGNWPLAFYPYYAEGIDRTLDSPAFGLLMRIEDPLSYLGTRHSSRLAVPKYIVNASGDDFFVPDNSQRYFDKLPGAKALRMVPNSSHSDIRRATLDSLVPFVKRIQHGKALPQVDAAPIETNGQTILRLRTSERPRQLLLWQATNPLARDFRYACGIRYTSTPIAMNGARPQQLVLVPPTNGWRAYFVEATFDDGFVATSQTYILGDGYPSTPPPAVGGSCRTLPGRDTHS
>NZ_CP008893.1|WP_004523708.1|2523330_2523546_+|hypothetical-protein
MAIVGEPPEELIDRLLRACRPLAPILPIAPMPQAKRRDERRVLQGKTWREMHRALVPFDRRTIQKEKPAAR
>NZ_CP008893.1|WP_011326446.1|2523556_2524111_-|membrane-protein
MSRTESSIFAKRSDWPRVFSKLGLVASSIGVFAFMPNARASDYSIAIGNGYQSVSRTPTGTGFGFLLDATRSGEDAYSIGSGLSFGVRIGAVSLTVAGKALHVRSADGRSGLTTPIGVIAGIPAASRLSLVARAFYTPRAIFNAALGAYTQATAGVRWTYKPINLEAGWRYEALKGRNGTRDPR
>NZ_CP008893.1|WP_004523706.1|2524695_2525241_+|type-1-fimbrial-protein
MKKKVVSFAVATLFGLVAAQSVFAQSIDQGQVKFTGELTANTCTIDAGSKDQIVPLPKVSTSALAAPGDVAGSTAFEIKVSKCAADVKKVAAHFEMENMDPNTRTLKNEATGADAATNVTIQLVNSDGTELPVGSTGSYFDVTGTDDARGATMIYGGQYYALDTTTAGKVESHTLFTLAYE
>NZ_CP008893.1|WP_004529635.1|2525320_2526043_+|fimbria/pilus-periplasmic-chaperone
MCVAVAAACCLASTLSQAAIVITGTRVVYPESSREVNVRLNNVEQSPVLVQAWIDDGNAGASPDEIKVPFVLMPPVFRVEPKKGQTLRVMYTGDDLPKDRESVYWLNVLEIPPKPTVEAEQNLLQLAFRTRIKLFFRPSALEDGNAAQARDQLKWKIVRNEKGVSVLRAENRSPYYISISQATAKSGDKSVQFDPGMVPPFGSKEFVSKHDISTLSTHAEIAYKLLNDYGAEVAGSATAE
>NZ_CP008893.1|WP_045606153.1|2526155_2528900_+|fimbrial-biogenesis-outer-membrane-usher-protein
MMIAAGAVACGVGSLCMPVVAAEFDGTRTGEQSRPDAMGEAPSGAEPGTRGRQALLVASHASPSAPTTVSFNSRLLMGGGIDLSRFERGNPVVAGIYPVDVTVNGERRGRMDVEFRDVRGGDSAAPCFTRAMLDRLGVEGDIVAKRLDAARDATGAASGQTPTLSASACIGLRDALPDATYTLDSADLTLDLTIPQVDMRKTARGYVDPSRWDNGVNAGLLQYNLSGYASENKFFGNHASSLFLGLQAGANIGAWRVRQRSNLMWANRSAGMSWRSLETYVQRDITALRSQITLGDSYTTGEIFESFGVRGMQLASDDRMLPVSLQSYAPTVRGVADTNARVAVRQRGNVIYEASVPPGPFEFDDLPPTGYGGDLDVTITESDGRTKHFTVPFASVRQLLRPGMQRFNFTVGQYRDALSNGKPWVAQLTYQRGMTNLLTGYAGLLSSTGYASGLIGVALNTPIGAFAFDVTSARTHLPGQGVRNGFSSHLSYSKMVPSTGTHFSMAAYRYSTANYYSLADAVTARYGYNAEERAWRNDYRARTRLQLNVNQRIGDRSSAYVSSSLLNYWDGRGRDIQFQAGFSSVFKRVSYTVYAQRSRSSDDRTVTQVGVNLSIPLGSGAYTKRNAFSSLTTSLSRASNGDSSIQANLSGSTAHVVPIDYGVNVSRSVTGDSNFASLGVYGTYRSPFGTYSGNASVDNRARQASFGANGAVVLHRGGVTLSPPLGSAAALVEAKGARGGKLINGQGATIDRFGYAVIPSLMPYRANTVAIDPSELPDDVELANTSEEVVPRNNSIVFVKMETKRGRPVFAATETEDGKPLPMGSELFDVEGKSLGGVGQGGMAFLRGLQGAGNVVAKWGAGASEQCTMPYLVPADQAQAKQSRAIVRIRLRCEPRLSADASQTPHGDGGTRND
>NZ_CP008893.1|WP_004529637.1|2528892_2529465_+|type-1-fimbrial-protein
MIEMNGLKFRRGAARRWPSIAAAAMFAASAACGAPPSPTVTIKFKGSYNPVTCTVVEGNENKTVHLPTISTSSLANAGETAGATGFDISVLCDGYAGNVLAYFENGPTTNENGNLDVEDPSDGQSASGVQVQLLNGDGSPIKVGDISTMKTVSVEASTPTPIPFFARYYATGKSGAGKVRTYVTFVIQML
>NZ_CP008893.1|WP_004531579.1|2529496_2530186_+|DotU-family-type-IV/VI-secretion-system-protein
MSIEMPAQPLRMLLQDTMLHVALLTQGARISRVHDWRARCIALVRQFEQALQDGGYRGGIANELSLAQCVFLDEITMRNLSPEQKEEWLRELLQFRFHSTRDGLSKVRARVDRLCSGHSANAALLEMYSLFHEFGLLGDKQGHALADARVSEARPTPGKKAVETAEVWKDGGAANEAAHGRSWRIVGGLLAFAALMTMWLVIDTRLSHEVEQMEVTSGDEAAIHPASGD
>NZ_CP008893.1|WP_004531578.1|2530188_2531865_+|OmpA-family-protein
MSRQIRFWLVWGAIPFVVLASLCLPLRMQPEWSHVLTIVLIIAAIVLAIEIFEHSRETAQDRAAEAEIDDHELAVIIVAGPHASSLFNSSGDDTAFRREAGALWLRADSVEQLRDTMMRVKASRGRFPDAAVVPLVSESDDESDMRQAFAKWRTELREALCYPDAAYVLPCYLAVYTCLGFKGADGARPKWTGDAIEIGTRQMNAASKVGELLASIRQQLLRPSPTGSSAQCALGLGVFDWLDATALLSSMTMLANTPPFMLKGLTLADVGRRPIRPGAWTRWLTVRTGLHIRQTKSSMAPLPVPRVAKHAESGIREGWSSARHLVSTRASFVPALVFSTVSTLGIAVAVSGWMNSRMIQRVSNDIADYRSGADEWIGRKRFAQARLEHDRTAIVQTLLDGVPTGFGWGLYRGQELLVKLDTVLDSPRAASIAMQLDTVSLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADSSGSDAANFQLSEARARAIRDWFVDQGVLKTRFIVQGAGDTHPIADNDSPSGRAQNRRVEVLLIPDVSSDRKASGTEL
>NZ_CP008893.1|WP_004523700.1|2532254_2532794_+|type-VI-secretion-system-contractile-sheath-small-subunit
MAISNSSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPAVGDRKFFSIDIDNFDERMKAMKPRVAFSVPNTLSGDGQLMVDITFESMDDFSPAAIAKKVDALSQLLDARTQLANLQTYMDGKSGAENLVSKVLKDPALLSALAKAPKPVAEQAENRESKEKH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP008893_3	3.1\|2521024\|19\|NZ_CP008893\|CRISPRCasFinder	2521024-2521042	19	NZ_CP008893.1	2520436-2520454	1	0.947
NZ_CP008893_3	3.1\|2521024\|19\|NZ_CP008893\|CRISPRCasFinder	2521024-2521042	19	NZ_CP008893.1	2520520-2520538	1	0.947
NZ_CP008893_3	3.1\|2521024\|19\|NZ_CP008893\|CRISPRCasFinder	2521024-2521042	19	NZ_CP008893.1	263655-263673	2	0.895
NZ_CP008893_3	3.1\|2521024\|19\|NZ_CP008893\|CRISPRCasFinder	2521024-2521042	19	NZ_CP008893.1	2520058-2520076	2	0.895
NZ_CP008893_3	3.1\|2521024\|19\|NZ_CP008893\|CRISPRCasFinder	2521024-2521042	19	NZ_CP008893.1	2520856-2520874	2	0.895

1. spacer 3.1|2521024|19|NZ_CP008893|CRISPRCasFinder matches to position: 2520436-2520454, mismatch: 1, identity: 0.947

cacatcaagcacggcaacg	CRISPR spacer
cacatcgagcacggcaacg	Protospacer
******.************

2. spacer 3.1|2521024|19|NZ_CP008893|CRISPRCasFinder matches to position: 2520520-2520538, mismatch: 1, identity: 0.947

cacatcaagcacggcaacg	CRISPR spacer
cacatcgagcacggcaacg	Protospacer
******.************

3. spacer 3.1|2521024|19|NZ_CP008893|CRISPRCasFinder matches to position: 263655-263673, mismatch: 2, identity: 0.895

cacatcaagcacggcaacg	CRISPR spacer
cacatcaagctcgacaacg	Protospacer
********** **.*****

4. spacer 3.1|2521024|19|NZ_CP008893|CRISPRCasFinder matches to position: 2520058-2520076, mismatch: 2, identity: 0.895

cacatcaagcacggcaacg	CRISPR spacer
cacatcgagcacggcgacg	Protospacer
******.********.***

5. spacer 3.1|2521024|19|NZ_CP008893|CRISPRCasFinder matches to position: 2520856-2520874, mismatch: 2, identity: 0.895

cacatcaagcacggcaacg	CRISPR spacer
cacatcgagcacggcgacg	Protospacer
******.********.***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

153950 : 229621

Tupanvirus(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009961431.1\|153950_155045_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_024432152.1\|155152_156454_+	DUF2875 family protein	NA	NA	NA	NA
WP_004532395.1\|156463_156727_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_004532408.1\|156909_157269_+\|transposase	transposase	NA	NA	NA	NA
WP_158332758.1\|157350_157875_+	hypothetical protein	NA	NA	NA	NA
WP_004537446.1\|158417_159101_-	Fe2+-dependent dioxygenase	Q5GQB0	Synechococcus_phage	5.0e-17	31.5
WP_004546105.1\|159097_159844_-	sel1 repeat family protein	NA	NA	NA	NA
WP_004524147.1\|159845_162092_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_004528489.1\|162490_163786_-	aspartate carbamoyltransferase	Q84489	Paramecium_bursaria_Chlorella_virus	6.3e-45	38.0
WP_004528487.1\|164064_164199_+	entericidin A/B family lipoprotein	NA	NA	NA	NA
WP_004546110.1\|164340_164787_-	cupin domain-containing protein	NA	NA	NA	NA
WP_004546114.1\|164783_165221_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_024431795.1\|165452_166934_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_004532390.1\|167247_167481_+	hypothetical protein	NA	NA	NA	NA
WP_004528481.1\|167592_167820_+	hypothetical protein	NA	NA	NA	NA
WP_004528480.1\|167916_168615_+	hypothetical protein	NA	NA	NA	NA
WP_024431797.1\|168630_178116_+	type I polyketide synthase	A0A2K9KZV5	Tupanvirus	2.1e-36	24.7
WP_004539523.1\|178141_179203_+	hypothetical protein	NA	NA	NA	NA
WP_024431798.1\|179199_183255_+	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	2.2e-51	26.5
WP_024431799.1\|183272_187976_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.6e-45	20.8
WP_004532400.1\|187972_189292_+	hypothetical protein	NA	NA	NA	NA
WP_004528474.1\|189288_190353_+	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_004536596.1\|190364_191312_+	MsnO8 family LLM class oxidoreductase	NA	NA	NA	NA
WP_024431074.1\|191308_193126_+	fatty acyl-AMP ligase	NA	NA	NA	NA
WP_004528471.1\|193122_193395_+	acyl carrier protein	NA	NA	NA	NA
WP_154218330.1\|193882_194119_+	hypothetical protein	NA	NA	NA	NA
WP_004533073.1\|194203_195073_-	hypothetical protein	NA	NA	NA	NA
WP_009972528.1\|195849_196245_+	hypothetical protein	NA	NA	NA	NA
WP_158332757.1\|196325_196754_-\|transposase	transposase	NA	NA	NA	NA
WP_024431800.1\|197043_198126_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_024431801.1\|198122_205499_-	toxin	NA	NA	NA	NA
WP_004528435.1\|205728_208587_-	RHS repeat protein	NA	NA	NA	NA
WP_004528436.1\|208642_213100_-	virulence protein	NA	NA	NA	NA
WP_038708256.1\|213187_216157_-	RHS repeat protein	NA	NA	NA	NA
WP_024432135.1\|216180_223734_-	hypothetical protein	NA	NA	NA	NA
WP_009972582.1\|225620_226076_+	transcriptional regulator	NA	NA	NA	NA
WP_024432134.1\|226235_226517_-	hypothetical protein	NA	NA	NA	NA
WP_085952178.1\|226518_227630_-\|transposase	IS3-like element ISBp1 family transposase	NA	NA	NA	NA
WP_079999963.1\|228064_228343_-	hypothetical protein	NA	NA	NA	NA
WP_102804204.1\|228501_229621_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.6e-49	39.5

DBSCAN-SWA_2

1996201 : 2063496

Streptococcus_phage(18.18%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009961431.1\|1996201_1997296_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_004524887.1\|1997394_1998567_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_004529276.1\|1998893_1999754_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	7.1e-13	28.0
WP_004544675.1\|1999755_2001372_+	acyl-CoA carboxylase subunit beta	NA	NA	NA	NA
WP_004524883.1\|2001384_2002536_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_004524882.1\|2002542_2003385_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_004547201.1\|2003381_2005394_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_004524880.1\|2005428_2006313_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_004547236.1\|2006675_2008337_+	AMP-binding protein	A0A1V0SBX8	Catovirus	1.6e-32	24.5
WP_004548868.1\|2009316_2010351_+	acyl-CoA desaturase	NA	NA	NA	NA
WP_009927010.1\|2010376_2010661_+	acyl carrier protein	NA	NA	NA	NA
WP_004530185.1\|2010673_2011609_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_004530184.1\|2011605_2012646_+	acyl-CoA desaturase	NA	NA	NA	NA
WP_004529287.1\|2012686_2013712_+	amidohydrolase	NA	NA	NA	NA
WP_004529288.1\|2013708_2015562_+	fatty acyl-AMP ligase	NA	NA	NA	NA
WP_004529289.1\|2015575_2015995_+	PaaI family thioesterase	NA	NA	NA	NA
WP_004536963.1\|2016001_2016973_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_004546323.1\|2017396_2018125_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	7.1e-22	31.2
WP_009950539.1\|2018344_2019778_+	amidohydrolase family protein	NA	NA	NA	NA
WP_004552566.1\|2019803_2020457_+	glutathione S-transferase	NA	NA	NA	NA
WP_004546323.1\|2020637_2021366_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	7.1e-22	31.2
WP_076823033.1\|2021419_2021722_-	hypothetical protein	NA	NA	NA	NA
WP_009950543.1\|2021791_2023552_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_004544755.1\|2023977_2024277_-	hypothetical protein	NA	NA	NA	NA
WP_102833721.1\|2024655_2027121_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_004546318.1\|2027202_2027400_-	hypothetical protein	NA	NA	NA	NA
WP_004529300.1\|2027400_2027664_-	putative Immunity protein 75	NA	NA	NA	NA
WP_004546328.1\|2028255_2032914_-	type IV secretion protein Rhs	A0A2H4JFP5	uncultured_Caudovirales_phage	8.3e-23	34.9
WP_004530178.1\|2032900_2034169_-	hypothetical protein	NA	NA	NA	NA
WP_004546303.1\|2034184_2036389_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	4.9e-42	27.7
WP_024428620.1\|2038363_2038603_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	3.1e-19	71.0
WP_085952178.1\|2038604_2039716_-\|transposase	IS3-like element ISBp1 family transposase	NA	NA	NA	NA
WP_009950567.1\|2040348_2042382_-	hypothetical protein	NA	NA	NA	NA
WP_024428696.1\|2042622_2044794_-	alpha-galactosidase	NA	NA	NA	NA
WP_004524829.1\|2044798_2045650_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_004524828.1\|2045650_2046574_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_004524827.1\|2046636_2047878_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_004524825.1\|2047913_2049158_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.1e-22	32.8
WP_009935227.1\|2049200_2049839_-	hypothetical protein	NA	NA	NA	NA
WP_131201358.1\|2050673_2051108_-	hypothetical protein	NA	NA	NA	NA
WP_004536893.1\|2051611_2052766_-	LacI family transcriptional regulator	NA	NA	NA	NA
WP_004524822.1\|2054527_2055268_+	hypothetical protein	NA	NA	NA	NA
WP_024429920.1\|2055696_2055852_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	1.8e-07	75.7
WP_071898310.1\|2055999_2056797_-	DUF746 domain-containing protein	NA	NA	NA	NA
WP_004557924.1\|2058610_2059177_-	suppressor of fused domain protein	NA	NA	NA	NA
WP_085965050.1\|2059925_2061061_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	3.1e-16	28.8
WP_085965013.1\|2062315_2063496_-\|transposase	IS3-like element ISBps1 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.2e-60	42.9

DBSCAN-SWA_3

2930728 : 2940336

Burkholderia_virus(75.0%)

integrase,transposase

attL 2925658:2925674|attR 2952163:2952179

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2925658:2925674	attL	NA	NA	NA	NA
WP_004188376.1\|2930728_2932711_+	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	1.8e-83	44.8
WP_004547951.1\|2932808_2933189_+	DUF4212 domain-containing protein	NA	NA	NA	NA
WP_004535221.1\|2933182_2935198_+	cation acetate symporter	NA	NA	NA	NA
WP_004537208.1\|2935493_2936693_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JX31	Burkholderia_virus	1.3e-225	99.5
WP_004537646.1\|2936689_2936839_-	bacteriophage protein Gp44	Q8W6Q6	Burkholderia_virus	3.3e-19	100.0
WP_009946442.1\|2937088_2937679_+	hypothetical protein	A4JX33	Burkholderia_virus	1.3e-101	96.9
WP_004549687.1\|2937853_2938072_-	hypothetical protein	Q6JIH9	Burkholderia_virus	5.7e-36	100.0
WP_009946438.1\|2938119_2938467_-	hypothetical protein	Q6JIH8	Burkholderia_virus	3.8e-58	100.0
WP_004537565.1\|2938951_2939227_-	bacteriophage protein Gp49	Q6JIH4	Burkholderia_virus	5.2e-42	95.6
WP_009939402.1\|2939894_2940068_+	BrnT family toxin	NA	NA	NA	NA
WP_004525420.1\|2940051_2940336_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.4e-10	50.0
2952163:2952179	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP008894

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP008893

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection