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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP009288 Paenibacillus durus strain DSM 1735 chromosome, complete genome 12 crisprs PrimPol,csa3,WYL,RT,cas14j,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,c2c10_CAS-V-U3,cas14k,DinG 1 14 9 0
NZ_CP009289 Paenibacillus durus strain DSM 1735 plasmid unnamed, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP009288
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009288_1 141662-141769 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009288_2 639721-639813 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009288_3 792896-793000 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009288_4 1470731-1472316 Unclear I-C
23 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009288_5 1473790-1475965 TypeI I-C
32 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009288_6 1477465-1477826 TypeI I-C
5 spacers
cas3,cas5,cas8c

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009288_7 1485975-1488814 TypeI I-C
42 spacers
cas3,cas5,cas8c,cas7,cas4,cas1,cas2

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009288_8 1498021-1500115 TypeI I-C
31 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009288_9 2264031-2264118 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009288_10 2403922-2404011 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009288_11 4432223-4432342 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009288_12 5364355-5364476 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP009288_4 4.17|1471843|36|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1471843-1471878 36 NZ_CP009289.1 3449-3484 1 0.972

1. spacer 4.17|1471843|36|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to position: 3449-3484, mismatch: 1, identity: 0.972

tgggaaaccctgatttgctcttactgctttgtagct	CRISPR spacer
tgggaaaccctgatttgctcttgctgctttgtagct	Protospacer
**********************.*************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP009288_4 4.17|1471843|36|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1471843-1471878 36 NZ_CP009289 Paenibacillus durus strain DSM 1735 plasmid unnamed, complete sequence 3449-3484 1 0.972
NZ_CP009288_6 6.4|1477695|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1477695-1477728 34 NZ_CP040830 Paenibacillus polymyxa strain ZF129 plasmid pAP1, complete sequence 71609-71642 5 0.853
NZ_CP009288_6 6.4|1477695|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1477695-1477728 34 NZ_CP040830 Paenibacillus polymyxa strain ZF129 plasmid pAP1, complete sequence 71872-71905 5 0.853
NZ_CP009288_1 1.1|141687|58|NZ_CP009288|CRISPRCasFinder 141687-141744 58 NZ_CP054613 Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence 900668-900725 6 0.897
NZ_CP009288_6 6.4|1477695|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1477695-1477728 34 NZ_CP040830 Paenibacillus polymyxa strain ZF129 plasmid pAP1, complete sequence 72804-72837 6 0.824
NZ_CP009288_7 7.7|1486410|33|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1486410-1486442 33 MG592630 Vibrio phage 1.265.O._10N.286.52.F6, partial genome 41109-41141 6 0.818
NZ_CP009288_1 1.1|141687|58|NZ_CP009288|CRISPRCasFinder 141687-141744 58 NZ_CP054613 Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence 1553592-1553649 7 0.879
NZ_CP009288_1 1.1|141687|58|NZ_CP009288|CRISPRCasFinder 141687-141744 58 NZ_CP054613 Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence 2547776-2547833 7 0.879
NZ_CP009288_5 5.4|1474023|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1474023-1474056 34 NZ_LR214986 Mycoplasma cynos strain NCTC10142 plasmid 13 343727-343760 7 0.794
NZ_CP009288_1 1.1|141687|58|NZ_CP009288|CRISPRCasFinder 141687-141744 58 NZ_CP054613 Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence 1583788-1583845 8 0.862
NZ_CP009288_7 7.36|1488346|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1488346-1488379 34 MN585989 Mycobacterium phage Superchunk, complete genome 35816-35849 8 0.765
NZ_CP009288_7 7.36|1488346|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1488346-1488379 34 KF017927 Mycobacterium phage Odin, complete genome 36191-36224 8 0.765
NZ_CP009288_7 7.36|1488346|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1488346-1488379 34 MG793454 Mycobacterium phage SWU2, complete genome 37351-37384 8 0.765
NZ_CP009288_8 8.8|1498522|33|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1498522-1498554 33 MH745368 Escherichia phage fp01, complete genome 30436-30468 8 0.758
NZ_CP009288_8 8.29|1499917|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1499917-1499950 34 NC_011368 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence 357058-357091 8 0.765
NZ_CP009288_1 1.1|141687|58|NZ_CP009288|CRISPRCasFinder 141687-141744 58 NZ_CP016544 Planococcus donghaensis strain DSM 22276 plasmid pPD76, complete sequence 7380-7437 9 0.845
NZ_CP009288_5 5.4|1474023|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1474023-1474056 34 NZ_CP011157 Bacillus cereus strain HN001 plasmid pRML02, complete sequence 115379-115412 9 0.735
NZ_CP009288_5 5.10|1474424|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1474424-1474458 35 NZ_CP035748 Leuconostoc mesenteroides strain SRCM103460 plasmid unnamed2, complete sequence 4545-4579 9 0.743
NZ_CP009288_5 5.10|1474424|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1474424-1474458 35 NZ_CP035750 Leuconostoc mesenteroides strain SRCM103460 plasmid unnamed4, complete sequence 8507-8541 9 0.743
NZ_CP009288_7 7.36|1488346|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1488346-1488379 34 NZ_CP014942 Rhodococcus sp. BH4 plasmid, complete sequence 627296-627329 9 0.735
NZ_CP009288_7 7.36|1488346|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1488346-1488379 34 MG099947 Mycobacterium phage Ph8s, complete genome 36545-36578 9 0.735
NZ_CP009288_7 7.36|1488346|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1488346-1488379 34 MK524530 Mycobacterium phage Pharaoh, complete genome 37110-37143 9 0.735
NZ_CP009288_8 8.11|1498720|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1498720-1498753 34 NC_005342 Burkholderia phage Bcep43, complete genome 43949-43982 9 0.735
NZ_CP009288_8 8.11|1498720|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1498720-1498753 34 AY368235 Burkholderia cepacia phage Bcep43, complete genome 43949-43982 9 0.735
NZ_CP009288_1 1.1|141687|58|NZ_CP009288|CRISPRCasFinder 141687-141744 58 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 484370-484427 10 0.828
NZ_CP009288_1 1.1|141687|58|NZ_CP009288|CRISPRCasFinder 141687-141744 58 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 485380-485437 10 0.828
NZ_CP009288_1 1.1|141687|58|NZ_CP009288|CRISPRCasFinder 141687-141744 58 CP031730 Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence 312640-312697 10 0.828
NZ_CP009288_4 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1471709-1471743 35 NC_019848 Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence 111091-111125 10 0.714
NZ_CP009288_4 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1471709-1471743 35 NZ_CP021798 Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence 812854-812888 10 0.714
NZ_CP009288_4 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1471709-1471743 35 NZ_CP021827 Sinorhizobium meliloti strain KH35c plasmid psymA, complete sequence 297893-297927 10 0.714
NZ_CP009288_4 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1471709-1471743 35 NZ_CP021830 Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence 1169045-1169079 10 0.714
NZ_CP009288_4 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1471709-1471743 35 NC_018683 Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence 65784-65818 10 0.714
NZ_CP009288_4 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1471709-1471743 35 NZ_CP021794 Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence 711008-711042 10 0.714
NZ_CP009288_4 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1471709-1471743 35 NC_003037 Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence 1267252-1267286 10 0.714
NZ_CP009288_4 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1471709-1471743 35 NZ_CP019585 Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence 1350258-1350292 10 0.714
NZ_CP009288_4 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1471709-1471743 35 NC_017324 Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence 231659-231693 10 0.714
NZ_CP009288_4 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1471709-1471743 35 NZ_CP021821 Sinorhizobium meliloti strain M162 plasmid accessoryA, complete sequence 59779-59813 10 0.714
NZ_CP009288_4 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1471709-1471743 35 NZ_CP021813 Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence 396009-396043 10 0.714
NZ_CP009288_4 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1471709-1471743 35 NZ_CP021809 Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence 561722-561756 10 0.714
NZ_CP009288_4 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1471709-1471743 35 NZ_CP021805 Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence 276673-276707 10 0.714
NZ_CP009288_4 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1471709-1471743 35 NC_020527 Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence 1265589-1265623 10 0.714
NZ_CP009288_7 7.24|1487544|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1487544-1487577 34 NZ_CP024774 Bacillus thuringiensis LM1212 plasmid pLM3, complete sequence 62695-62728 10 0.706
NZ_CP009288_7 7.24|1487544|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1487544-1487577 34 NZ_CP041074 Bacillus tropicus strain LM1212-W3 plasmid p1, complete sequence 7021-7054 10 0.706
NZ_CP009288_7 7.24|1487544|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1487544-1487577 34 NZ_CP015253 Bacillus thuringiensis Bt18247 plasmid p113275, complete sequence 18941-18974 10 0.706
NZ_CP009288_7 7.24|1487544|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1487544-1487577 34 AP013459 Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S39-C21 36942-36975 10 0.706
NZ_CP009288_8 8.11|1498720|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1498720-1498753 34 NZ_CP023550 Rhodobacter sp. CZR27 plasmid unnamed2, complete sequence 171256-171289 10 0.706
NZ_CP009288_8 8.10|1498654|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1498654-1498687 34 MN652886 Escherichia phage Rac genomic sequence 551-584 11 0.676
NZ_CP009288_8 8.20|1499320|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1499320-1499353 34 NZ_AP014705 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence 1103949-1103982 11 0.676
NZ_CP009288_7 7.24|1487544|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT 1487544-1487577 34 NZ_CP033463 Brevibacillus laterosporus strain 1821L plasmid p1821L03, complete sequence 1-28 12 0.647
NZ_CP009288_1 1.1|141687|58|NZ_CP009288|CRISPRCasFinder 141687-141744 58 NC_004604 Bacillus megaterium QM B1551 plasmid pBM400, complete sequence 47657-47714 15 0.741
NZ_CP009288_1 1.1|141687|58|NZ_CP009288|CRISPRCasFinder 141687-141744 58 NZ_CP041068 Bacillus megaterium strain KNU-01 plasmid pKNU_01_4, complete sequence 37432-37489 15 0.741
NZ_CP009288_1 1.1|141687|58|NZ_CP009288|CRISPRCasFinder 141687-141744 58 CP041516 Bacillus aryabhattai strain KNU10 plasmid unnamed, complete sequence 16631-16688 15 0.741
NZ_CP009288_1 1.1|141687|58|NZ_CP009288|CRISPRCasFinder 141687-141744 58 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 9191-9248 16 0.724
NZ_CP009288_1 1.1|141687|58|NZ_CP009288|CRISPRCasFinder 141687-141744 58 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 69536-69593 16 0.724
NZ_CP009288_1 1.1|141687|58|NZ_CP009288|CRISPRCasFinder 141687-141744 58 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 2068-2125 16 0.724
NZ_CP009288_1 1.1|141687|58|NZ_CP009288|CRISPRCasFinder 141687-141744 58 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 553-610 16 0.724
NZ_CP009288_1 1.1|141687|58|NZ_CP009288|CRISPRCasFinder 141687-141744 58 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 90-147 16 0.724

1. spacer 4.17|1471843|36|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009289 (Paenibacillus durus strain DSM 1735 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.972

tgggaaaccctgatttgctcttactgctttgtagct	CRISPR spacer
tgggaaaccctgatttgctcttgctgctttgtagct	Protospacer
**********************.*************

2. spacer 6.4|1477695|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040830 (Paenibacillus polymyxa strain ZF129 plasmid pAP1, complete sequence) position: , mismatch: 5, identity: 0.853

actcatgtccagctgatcgactccaccgcagcct	CRISPR spacer
ctttatgtccaactgatcgactccacggcagcct	Protospacer
 .*.*******.************** *******

3. spacer 6.4|1477695|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040830 (Paenibacillus polymyxa strain ZF129 plasmid pAP1, complete sequence) position: , mismatch: 5, identity: 0.853

actcatgtccagctgatcgactccaccgcagcct	CRISPR spacer
tcctatgtccagctgatcagctccaccgcagcct	Protospacer
 *..**************..**************

4. spacer 1.1|141687|58|NZ_CP009288|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.897

-gctaccatacatacggaggcttagctcagctgggagagcatctgccttacaagcagag	CRISPR spacer
aagtcgcttaca-acggaggcttagctcagctgggagagcatctgccttacaagcagag	Protospacer
 . *  * **** **********************************************

5. spacer 6.4|1477695|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040830 (Paenibacillus polymyxa strain ZF129 plasmid pAP1, complete sequence) position: , mismatch: 6, identity: 0.824

actcatgtccagctgatcgactccaccgcagcct	CRISPR spacer
gattaagtccagctgatcaactccaccgccgcct	Protospacer
. *.* ************.********** ****

6. spacer 7.7|1486410|33|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to MG592630 (Vibrio phage 1.265.O._10N.286.52.F6, partial genome) position: , mismatch: 6, identity: 0.818

agcaggcatgccgctaacaaatccaacagcagc-	CRISPR spacer
gtcagtcatgccactaacaaatccaa-accagcc	Protospacer
. *** ******.************* * **** 

7. spacer 1.1|141687|58|NZ_CP009288|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.879

---gctaccatacatacggaggcttagctcagctgggagagcatctgccttacaagcaga	CRISPR spacer
cgggtcaccat---tatggaggcttagctcagctgggagagcatctgccttacaagcaga	Protospacer
   *..*****   **.*******************************************

8. spacer 1.1|141687|58|NZ_CP009288|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.879

---gctaccatacatacggaggcttagctcagctgggagagcatctgccttacaagcaga	CRISPR spacer
cgggtcaccat---tatggaggcttagctcagctgggagagcatctgccttacaagcaga	Protospacer
   *..*****   **.*******************************************

9. spacer 5.4|1474023|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 7, identity: 0.794

ctcaaa---taataaagcatatgagttaaatatttac	CRISPR spacer
---aaaatctaaaaaagcatatgaattaaatattgat	Protospacer
   ***   *** ***********.********* *.

10. spacer 1.1|141687|58|NZ_CP009288|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.862

---gctaccatacatacggaggcttagctcagctgggagagcatctgccttacaagcaga	CRISPR spacer
cgggtcaccat---catggaggcttagctcagctgggagagcatctgccttacaagcaga	Protospacer
   *..*****   .*.*******************************************

11. spacer 7.36|1488346|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to MN585989 (Mycobacterium phage Superchunk, complete genome) position: , mismatch: 8, identity: 0.765

gacaccgaaaccgtcgaaatccaaaccctgaagg------	CRISPR spacer
gacaccgaaaccgtcgaagtccaa------caggttctcg	Protospacer
******************.*****       ***      

12. spacer 7.36|1488346|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to KF017927 (Mycobacterium phage Odin, complete genome) position: , mismatch: 8, identity: 0.765

gacaccgaaaccgtcgaaatccaaaccctgaagg------	CRISPR spacer
gacaccgaaaccgtcgaagtccaa------caggttctcg	Protospacer
******************.*****       ***      

13. spacer 7.36|1488346|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to MG793454 (Mycobacterium phage SWU2, complete genome) position: , mismatch: 8, identity: 0.765

gacaccgaaaccgtcgaaatccaaaccctgaagg-----	CRISPR spacer
gacaccgaaaccgtcgaagtccaa-----gagcgtttca	Protospacer
******************.*****     **. *     

14. spacer 8.8|1498522|33|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to MH745368 (Escherichia phage fp01, complete genome) position: , mismatch: 8, identity: 0.758

cgtgatacgttctcctttttccccggtagtttg	CRISPR spacer
cgccacacgtcctcctttttcccaggtagtggt	Protospacer
**. *.****.************ ******   

15. spacer 8.29|1499917|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 8, identity: 0.765

tttatgggaaagcaatgaccccgatggcatgatc--	CRISPR spacer
tgtacgggaaagcaatgaccccaatg--aataccga	Protospacer
* **.*****************.***  *  *.*  

16. spacer 1.1|141687|58|NZ_CP009288|CRISPRCasFinder matches to NZ_CP016544 (Planococcus donghaensis strain DSM 22276 plasmid pPD76, complete sequence) position: , mismatch: 9, identity: 0.845

---gctaccatacatacggaggcttagctcagctgggagagcatctgccttacaagcaga	CRISPR spacer
ggggtcaccat---tttggaggattagctcagctgggagagcatctgccttacaagcaga	Protospacer
   *..*****   * .***** *************************************

17. spacer 5.4|1474023|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011157 (Bacillus cereus strain HN001 plasmid pRML02, complete sequence) position: , mismatch: 9, identity: 0.735

ctcaaat--aataaagcatatgagttaaatatttac	CRISPR spacer
--caacctaaataaatcatatgagtcaaatattcct	Protospacer
  *** .  ****** *********.*******. .

18. spacer 5.10|1474424|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035748 (Leuconostoc mesenteroides strain SRCM103460 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

atgatga----agtgattattgatgagcctgaagatcag	CRISPR spacer
----tgaaaccagtcattattgatcagcctgaagatagt	Protospacer
    ***    *** ********* *********** . 

19. spacer 5.10|1474424|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035750 (Leuconostoc mesenteroides strain SRCM103460 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.743

atgatga----agtgattattgatgagcctgaagatcag	CRISPR spacer
----tgaaaccagtcattattgatcagcctgaagatagt	Protospacer
    ***    *** ********* *********** . 

20. spacer 7.36|1488346|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 9, identity: 0.735

gacaccgaaaccgtcgaaatccaaaccctgaagg	CRISPR spacer
accaccgaaacagtcgatatccaaaccaggcctg	Protospacer
. ********* ***** *********  *   *

21. spacer 7.36|1488346|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to MG099947 (Mycobacterium phage Ph8s, complete genome) position: , mismatch: 9, identity: 0.735

gacaccgaaaccgtcgaaatccaa---accctgaagg	CRISPR spacer
gacgccgaacccgtcgaaatccaacaggttctgg---	Protospacer
***.***** **************   ...***.   

22. spacer 7.36|1488346|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to MK524530 (Mycobacterium phage Pharaoh, complete genome) position: , mismatch: 9, identity: 0.735

gacaccgaaaccgtcgaaatccaaaccctgaagg------	CRISPR spacer
gacgccgaaaccgtcgaagtccaa------gaggttctcg	Protospacer
***.**************.*****      .***      

23. spacer 8.11|1498720|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NC_005342 (Burkholderia phage Bcep43, complete genome) position: , mismatch: 9, identity: 0.735

ttcaggctgcccggcatgg-------cggcctgttctcgtc	CRISPR spacer
ttccggctgcccggcatggcgaccgccgacctgt-------	Protospacer
*** ***************       **.*****       

24. spacer 8.11|1498720|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to AY368235 (Burkholderia cepacia phage Bcep43, complete genome) position: , mismatch: 9, identity: 0.735

ttcaggctgcccggcatgg-------cggcctgttctcgtc	CRISPR spacer
ttccggctgcccggcatggcgaccgccgacctgt-------	Protospacer
*** ***************       **.*****       

25. spacer 1.1|141687|58|NZ_CP009288|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.828

----gctaccatacatacggaggcttagctcagctgggagagcatctgccttacaagcag	CRISPR spacer
aggggtcac----catatggaggattagctcagctgggagagcatctgccttacaagcag	Protospacer
    *..**    ****.***** ************************************

26. spacer 1.1|141687|58|NZ_CP009288|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.828

gctaccatacatacggaggcttagctcagctgggagagcatctgccttacaagcagag	CRISPR spacer
ggggtcaccaaaatggaggattagctcagctgggagagcatctgccttacaagcagag	Protospacer
*  ..**.  * *.***** **************************************

27. spacer 1.1|141687|58|NZ_CP009288|CRISPRCasFinder matches to CP031730 (Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.828

gctaccatacatacggaggcttagctcagctgggagagcatctgccttacaagcagag	CRISPR spacer
acacctgtttctatggaggattagctcagctgggagagcatctgccttacaagcagag	Protospacer
.*  *..* . **.***** **************************************

28. spacer 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NC_019848 (Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence) position: , mismatch: 10, identity: 0.714

gtctacgacgactacgcctaccagctgcgccaggg	CRISPR spacer
atagtcgacgacttcgcctacgagctgcgcgccgc	Protospacer
.*   ******** ******* ********   * 

29. spacer 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 10, identity: 0.714

gtctacgacgactacgcctaccagctgcgccaggg	CRISPR spacer
atagtcgacgacttcgcctacgagctgcgcgccgc	Protospacer
.*   ******** ******* ********   * 

30. spacer 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021827 (Sinorhizobium meliloti strain KH35c plasmid psymA, complete sequence) position: , mismatch: 10, identity: 0.714

gtctacgacgactacgcctaccagctgcgccaggg	CRISPR spacer
atagtcgacgacttcgcctacgagctgcgcgccgc	Protospacer
.*   ******** ******* ********   * 

31. spacer 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021830 (Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence) position: , mismatch: 10, identity: 0.714

gtctacgacgactacgcctaccagctgcgccaggg	CRISPR spacer
atagtcgacgacttcgcctacgagctgcgcgccgc	Protospacer
.*   ******** ******* ********   * 

32. spacer 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NC_018683 (Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence) position: , mismatch: 10, identity: 0.714

gtctacgacgactacgcctaccagctgcgccaggg	CRISPR spacer
atagtcgacgacttcgcctacgagctgcgcgccgc	Protospacer
.*   ******** ******* ********   * 

33. spacer 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 10, identity: 0.714

gtctacgacgactacgcctaccagctgcgccaggg	CRISPR spacer
atagtcgacgacttcgcctacgagctgcgcgccgc	Protospacer
.*   ******** ******* ********   * 

34. spacer 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 10, identity: 0.714

gtctacgacgactacgcctaccagctgcgccaggg	CRISPR spacer
atagtcgacgacttcgcctacgagctgcgcgccgc	Protospacer
.*   ******** ******* ********   * 

35. spacer 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019585 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence) position: , mismatch: 10, identity: 0.714

gtctacgacgactacgcctaccagctgcgccaggg	CRISPR spacer
atagtcgacgacttcgcctacgagctgcgcgccgc	Protospacer
.*   ******** ******* ********   * 

36. spacer 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 10, identity: 0.714

gtctacgacgactacgcctaccagctgcgccaggg	CRISPR spacer
atagtcgacgacttcgcctacgagctgcgcgccgc	Protospacer
.*   ******** ******* ********   * 

37. spacer 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021821 (Sinorhizobium meliloti strain M162 plasmid accessoryA, complete sequence) position: , mismatch: 10, identity: 0.714

gtctacgacgactacgcctaccagctgcgccaggg	CRISPR spacer
atagtcgacgacttcgcctacgagctgcgcgccgc	Protospacer
.*   ******** ******* ********   * 

38. spacer 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 10, identity: 0.714

gtctacgacgactacgcctaccagctgcgccaggg	CRISPR spacer
atagtcgacgacttcgcctacgagctgcgcgccgc	Protospacer
.*   ******** ******* ********   * 

39. spacer 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021809 (Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence) position: , mismatch: 10, identity: 0.714

gtctacgacgactacgcctaccagctgcgccaggg	CRISPR spacer
atagtcgacgacttcgcctacgagctgcgcgccgc	Protospacer
.*   ******** ******* ********   * 

40. spacer 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021805 (Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence) position: , mismatch: 10, identity: 0.714

gtctacgacgactacgcctaccagctgcgccaggg	CRISPR spacer
atagtcgacgacttcgcctacgagctgcgcgccgc	Protospacer
.*   ******** ******* ********   * 

41. spacer 4.15|1471709|35|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 10, identity: 0.714

gtctacgacgactacgcctaccagctgcgccaggg	CRISPR spacer
atagtcgacgacttcgcctacgagctgcgcgccgc	Protospacer
.*   ******** ******* ********   * 

42. spacer 7.24|1487544|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024774 (Bacillus thuringiensis LM1212 plasmid pLM3, complete sequence) position: , mismatch: 10, identity: 0.706

ctaaaaaagaagaggtgaaaatagtatgaaggaa	CRISPR spacer
ttcaaaaaagagaggtgaaaatagtatgtctatt	Protospacer
.* *****..******************   .  

43. spacer 7.24|1487544|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041074 (Bacillus tropicus strain LM1212-W3 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.706

ctaaaaaagaagaggtgaaaatagtatgaaggaa	CRISPR spacer
ttcaaaaaagagaggtgaaaatagtatgtctatt	Protospacer
.* *****..******************   .  

44. spacer 7.24|1487544|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015253 (Bacillus thuringiensis Bt18247 plasmid p113275, complete sequence) position: , mismatch: 10, identity: 0.706

ctaaaaaagaagaggtgaaaatagtatgaaggaa	CRISPR spacer
ttcaaaaaagagaggtgaaaatagtatgtctatt	Protospacer
.* *****..******************   .  

45. spacer 7.24|1487544|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to AP013459 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S39-C21) position: , mismatch: 10, identity: 0.706

ctaaaaaagaagaggtgaaaatagtatgaaggaa	CRISPR spacer
gctaaaaagaaaaagtgaaaatagtattagtaac	Protospacer
 . ********.*.************* *. .* 

46. spacer 8.11|1498720|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023550 (Rhodobacter sp. CZR27 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.706

ttcaggctgcccggcatggcggcctgttctcgtc	CRISPR spacer
cgcaggccgcccggcaaggcggcctgccgtagga	Protospacer
. *****.******** *********.. * *  

47. spacer 8.10|1498654|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to MN652886 (Escherichia phage Rac genomic sequence) position: , mismatch: 11, identity: 0.676

atatactcctgcgacactggcaagtttttcacct	CRISPR spacer
ccttactcctgcggcactggcaagctttgtcttg	Protospacer
 . **********.**********.*** . .. 

48. spacer 8.20|1499320|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 11, identity: 0.676

tcctttgttcagcttgtccatagcctccccctta	CRISPR spacer
cgccttgttcatcttgtccatggcctccatggag	Protospacer
. *.******* *********.****** .   .

49. spacer 7.24|1487544|34|NZ_CP009288|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033463 (Brevibacillus laterosporus strain 1821L plasmid p1821L03, complete sequence) position: , mismatch: 12, identity: 0.647

ctaaaaaagaagaggtgaaaatagtatgaaggaa	CRISPR spacer
gacaaaaagaagaggtgaaaattgaata------	Protospacer
   ******************* * **.      

50. spacer 1.1|141687|58|NZ_CP009288|CRISPRCasFinder matches to NC_004604 (Bacillus megaterium QM B1551 plasmid pBM400, complete sequence) position: , mismatch: 15, identity: 0.741

gctaccataca------tacggaggcttagctcagctgggagagcatctgccttacaagc	CRISPR spacer
------atatagatttttttggaggattagctcagctgggagagcacctgccttacaagc	Protospacer
      ***.*      * .***** ********************.*************

51. spacer 1.1|141687|58|NZ_CP009288|CRISPRCasFinder matches to NZ_CP041068 (Bacillus megaterium strain KNU-01 plasmid pKNU_01_4, complete sequence) position: , mismatch: 15, identity: 0.741

gctaccataca------tacggaggcttagctcagctgggagagcatctgccttacaagc	CRISPR spacer
------atatagatttttttggaggattagctcagctgggagagcacctgccttacaagc	Protospacer
      ***.*      * .***** ********************.*************

52. spacer 1.1|141687|58|NZ_CP009288|CRISPRCasFinder matches to CP041516 (Bacillus aryabhattai strain KNU10 plasmid unnamed, complete sequence) position: , mismatch: 15, identity: 0.741

gctaccataca------tacggaggcttagctcagctgggagagcatctgccttacaagc	CRISPR spacer
------atatagatttttttggaggattagctcagctgggagagcacctgccttacaagc	Protospacer
      ***.*      * .***** ********************.*************

53. spacer 1.1|141687|58|NZ_CP009288|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 16, identity: 0.724

gctaccatacata-------cggaggcttagctcagctgggagagcatctgccttacaag	CRISPR spacer
-------tatatagattctttggaggattagctcagctgggagagcacctgccttacaag	Protospacer
       **.***       .***** ********************.************

54. spacer 1.1|141687|58|NZ_CP009288|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 16, identity: 0.724

gctaccatacata-------cggaggcttagctcagctgggagagcatctgccttacaag	CRISPR spacer
-------tatatagattctttggaggattagctcagctgggagagcacctgccttacaag	Protospacer
       **.***       .***** ********************.************

55. spacer 1.1|141687|58|NZ_CP009288|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 16, identity: 0.724

gctaccatacata-------cggaggcttagctcagctgggagagcatctgccttacaag	CRISPR spacer
-------tatatagattctttggaggattagctcagctgggagagcacctgccttacaag	Protospacer
       **.***       .***** ********************.************

56. spacer 1.1|141687|58|NZ_CP009288|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 16, identity: 0.724

gctaccatacata-------cggaggcttagctcagctgggagagcatctgccttacaag	CRISPR spacer
-------tatatagattctttggaggattagctcagctgggagagcacctgccttacaag	Protospacer
       **.***       .***** ********************.************

57. spacer 1.1|141687|58|NZ_CP009288|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 16, identity: 0.724

gctaccatacata-------cggaggcttagctcagctgggagagcatctgccttacaag	CRISPR spacer
-------tatatagattctttggaggattagctcagctgggagagcacctgccttacaag	Protospacer
       **.***       .***** ********************.************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 755938 : 767032 10 Mollivirus(25.0%) NA NA
DBSCAN-SWA_2 823025 : 831522 6 Klosneuvirus(33.33%) NA NA
DBSCAN-SWA_3 879050 : 999022 105 Erysipelothrix_phage(17.24%) coat,integrase,terminase,head,transposase,tail,portal attL 976649:976708|attR 997833:999170
DBSCAN-SWA_4 3975070 : 3983167 9 Staphylococcus_phage(57.14%) NA NA
DBSCAN-SWA_5 4052210 : 4080268 34 Paenibacillus_phage(33.33%) integrase,terminase,tail attL 4044538:4044551|attR 4079749:4079762
DBSCAN-SWA_6 4626344 : 4692373 55 Bacillus_virus(21.43%) protease,transposase,tRNA NA
DBSCAN-SWA_7 5239921 : 5266228 30 Brevibacillus_phage(43.75%) tail,plate,transposase,portal NA
DBSCAN-SWA_8 5577107 : 5637348 54 Bacillus_phage(30.77%) holin,lysis,transposase,tRNA NA
DBSCAN-SWA_9 5644145 : 5695493 36 Bacillus_phage(30.0%) integrase,transposase attL 5641531:5641545|attR 5703810:5703824
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP009289
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage