CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009451	Cedecea neteri strain SSMD04 chromosome, complete genome	3 crisprs	DEDDh,cas3,DinG,csa3	0	2	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009451_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009451_1

128501-128581

Orphan

Consensus_repeat	Method
CCTCTCCCCAAAGGGGCGAGGGAGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009451_1

>merge|NZ_CP009451|1|128501-128581|CRISPRCasFinder
CCTCTCCCCAAAGGGGCGAGGGAGAAAAAAAGCTATGGGAAACATTGTTTATCACCTCTCCCCAAAGGGGCGAGGGAGAAA

>NZ_CP009451|1|1|128501-128581|CRISPRCasFinder
CCTCTCCCCAAAGGGGCGAGGGAGAAA	AAAAGCTATGGGAAACATTGTTTATCA
CCTCTCCCCAAAGGGGCGAGGGAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009451.1\|WP_038472127.1\|133186_134131_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP009451.1\|WP_038472105.1\|121187_122255_+\|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK	unknown	unknown	gnl\|CDD\|131215
NZ_CP009451.1\|WP_038472117.1\|126880_128197_+\|phenylacetate--CoA-ligase	unknown	unknown	gnl\|CDD\|131210
NZ_CP009451.1\|WP_038472115.1\|125648_126857_+\|3-oxoadipyl-CoA-thiolase	unknown	unknown	gnl\|CDD\|181624
NZ_CP009451.1\|WP_038472109.1\|123021_123810_+\|2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA-isomerase	unknown	unknown	gnl\|CDD\|236163
NZ_CP009451.1\|WP_038472123.1\|130713_132333_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
NZ_CP009451.1\|WP_038482572.1\|136643_137303_-\|AzlC-family-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224215
NZ_CP009451.1\|WP_038472131.1\|135884_136124_-\|DUF2554-family-protein	unknown	unknown	gnl\|CDD\|313921
NZ_CP009451.1\|WP_038472125.1\|132329_133190_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP009451.1\|WP_038472101.1\|119919_120675_+\|phenylacetate-CoA-oxygenase-subunit-PaaC	unknown	unknown	gnl\|CDD\|368300
NZ_CP009451.1\|WP_038472113.1\|125226_125652_+\|hydroxyphenylacetyl-CoA-thioesterase-PaaI	unknown	unknown	gnl\|CDD\|131339
NZ_CP009451.1\|WP_038472133.1\|136320_136644_-\|AzlD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377512
NZ_CP009451.1\|WP_038472119.1\|128582_129674_-\|alkylhydroperoxidase-domain-protein	unknown	unknown	gnl\|CDD\|188545
NZ_CP009451.1\|WP_038472111.1\|123812_125237_+\|3-hydroxyacyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236211
NZ_CP009451.1\|WP_038472103.1\|120685_121180_+\|phenylacetate-CoA-oxygenase-subunit-PaaJ	unknown	unknown	gnl\|CDD\|131214
NZ_CP009451.1\|WP_008461407.1\|119623_119911_+\|1,2-phenylacetyl-CoA-epoxidase-subunit-B	unknown	unknown	gnl\|CDD\|237504
NZ_CP009451.1\|WP_038472129.1\|134140_135766_-\|TIGR04028-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274929
NZ_CP009451.1\|WP_038472121.1\|129670_130717_-\|putative-FMN-dependent-luciferase-like-monooxygenase	unknown	unknown	gnl\|CDD\|274928
NZ_CP009451.1\|WP_038472107.1\|122254_123022_+\|2,3-dehydroadipyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|182026
NZ_CP009451.1\|WP_038472135.1\|137408_137957_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045

Protein	Function_ID	Function_description	E-value
NZ_CP009451.1\|WP_038472127.1\|133186_134131_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.8585e-82
NZ_CP009451.1\|WP_038472105.1\|121187_122255_+\|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK	gnl\|CDD\|131215	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	5.03183e-169
NZ_CP009451.1\|WP_038472117.1\|126880_128197_+\|phenylacetate--CoA-ligase	gnl\|CDD\|131210	TIGR02155, Phenylacetate-coenzyme_A_ligase, phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. [Energy metabolism, Other].	0
NZ_CP009451.1\|WP_038472115.1\|125648_126857_+\|3-oxoadipyl-CoA-thiolase	gnl\|CDD\|181624	PRK09050, PRK09050, beta-ketoadipyl CoA thiolase; Validated.	0
NZ_CP009451.1\|WP_038472109.1\|123021_123810_+\|2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA-isomerase	gnl\|CDD\|236163	PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.	2.19835e-173
NZ_CP009451.1\|WP_038472123.1\|130713_132333_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
NZ_CP009451.1\|WP_038482572.1\|136643_137303_-\|AzlC-family-ABC-transporter-permease	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	2.61757e-43
NZ_CP009451.1\|WP_038472131.1\|135884_136124_-\|DUF2554-family-protein	gnl\|CDD\|313921	pfam10829, DUF2554, Protein of unknown function (DUF2554). This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.	6.12458e-18
NZ_CP009451.1\|WP_038472125.1\|132329_133190_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.28426e-75
NZ_CP009451.1\|WP_038472101.1\|119919_120675_+\|phenylacetate-CoA-oxygenase-subunit-PaaC	gnl\|CDD\|368300	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein. This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid. These proteins may form part of a dioxygenase complex.	1.52345e-115
NZ_CP009451.1\|WP_038472113.1\|125226_125652_+\|hydroxyphenylacetyl-CoA-thioesterase-PaaI	gnl\|CDD\|131339	TIGR02286, Acyl-coenzyme_A_thioesterase_PaaI, phenylacetic acid degradation protein PaaD. This member of the domain family TIGR00369 (which is, in turn, a member of the pfam03061 thioesterase superfamily) is nearly always found adjacent to other genes of the phenylacetic acid degradation pathway. Its function is currently unknown, but a role as a thioesterase is not inconsistent with the proposed overall pathway. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.	2.29737e-53
NZ_CP009451.1\|WP_038472133.1\|136320_136644_-\|AzlD-domain-containing-protein	gnl\|CDD\|377512	pfam05437, AzlD, Branched-chain amino acid transport protein (AzlD). This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD is known to be involved in conferring resistance to 4-azaleucine although its exact role is uncertain.	3.07852e-05
NZ_CP009451.1\|WP_038472119.1\|128582_129674_-\|alkylhydroperoxidase-domain-protein	gnl\|CDD\|188545	TIGR04030, perox_Avi_7169, alkylhydroperoxidase domain protein, Avi_7169 family. Members of this family represent a narrow clade that falls within a family of alkylhydroperoxidase-related proteins, fused to or adjacent to a sequence described by TIGR04029. These two partners occur almost always in the context of a putative FMN-dependent luciferase-like monooxygenase (LLM) (TIGR04027), and an ABC transporter in which TIGR04028 models the substrate-binding protein.	4.23278e-99
NZ_CP009451.1\|WP_038472111.1\|123812_125237_+\|3-hydroxyacyl-CoA-dehydrogenase	gnl\|CDD\|236211	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated.	0
NZ_CP009451.1\|WP_038472103.1\|120685_121180_+\|phenylacetate-CoA-oxygenase-subunit-PaaJ	gnl\|CDD\|131214	TIGR02159, Putative_12-phenylacetyl-CoA_epoxidase_subunit_D, phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	5.4579e-71
NZ_CP009451.1\|WP_008461407.1\|119623_119911_+\|1,2-phenylacetyl-CoA-epoxidase-subunit-B	gnl\|CDD\|237504	PRK13781, paaB, phenylacetate-CoA oxygenase subunit PaaB; Provisional.	5.05303e-64
NZ_CP009451.1\|WP_038472129.1\|134140_135766_-\|TIGR04028-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274929	TIGR04028, extracellular_solute-binding_protein_family, ABC transporter substrate binding protein, KPN_01854 family. Members of this protein family are ABC transporter substrate-binding proteins related to KPN_01854 from Klebsiella pneumoniae, and occur in both Gram-positive and Gram-negative species. This transport protein family is closely associated with a putative FMN-dependent luciferase-like monooxygenase of unknown function (TIGR04027), as well as with the other proteins of its transporter complex. [Transport and binding proteins, Unknown substrate].	0
NZ_CP009451.1\|WP_038472121.1\|129670_130717_-\|putative-FMN-dependent-luciferase-like-monooxygenase	gnl\|CDD\|274928	TIGR04027, Luciferase-like_monooxygenase, putative FMN-dependent luciferase-like monooxygenase, KPN_01858 family. This protein family consists of luciferase-like monooxygenases (LLM), and include KPN_01858 from Klebsiella pneumoniae as a representative member. Most are from species that lack F420 biosynthesis, so the family is likely to bind FMN as its cofactor. This family is closely associated with a binding protein-dependent ABC transporter, suggesting a role in catabolism. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP009451.1\|WP_038472107.1\|122254_123022_+\|2,3-dehydroadipyl-CoA-hydratase	gnl\|CDD\|182026	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional.	1.41637e-135
NZ_CP009451.1\|WP_038472135.1\|137408_137957_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	3.82228e-13

>NZ_CP009451.1|WP_038472117.1|126880_128197_+|phenylacetate--CoA-ligase
MITSETKLEPIETASLDELQALQTQRLKWTLNHAYNNVPMYKRKFDAVGVHPDDFKELKDIRLFPCTTKQDLRDNYPFDTFAVPMEQVVRIHASSGTTGKPTVVGYTQNDIDNWANLVARSLRAAGGTPKDKIHVSYGYGLFTGGLGAHYGAERLGATVIPMSGGQTEKQAQLIRDFQPDMIMVTPSWCLNLIEELERQMGGDASGCSLRVGVFGAEPWTKAMRAEIERRLGITALDIYGLSEVMGPGVAMECLESRDGPTIWEDHFYPEIVDPQGGVPLEDGEHGELLFTTLTKEALPVIRYRTRDLTRLLPGSSRTMRRMDQITGRSDDMLIIRGVNVFPSQLEEEILKFQHLAPHYQLEVHRRGHLDTLAIKVELKESSLYLSHEQRCGVCHELRHRIKSMVGISTDITIVNCGSLPRSEGKAIRVCDLRQAANH
>NZ_CP009451.1|WP_038472115.1|125648_126857_+|3-oxoadipyl-CoA-thiolase
MSQAFICDGVRTPIGRYGGALSGVRADDLAALPLKALLARYPNLDWSAVDDVIFGCANQAGEDNRDVARMATLLAGIPVEVPGTTINRLCGSGLDAVGFAARAIKAGDAQLMLAGGVESMSRAPFVMGKASSPFQRQAEMFDTTIGWRFVNPLMAAQFGTDSMPETAENVAELLKISREDQDRFAFRSQQRTARAQQKGILAEEIVPVTLSGRKGAVTEMRDDEHPRAETTLEQLAALKTPFRANGVVTAGNASGVNDGAAALIIASEAAALRHGLTPRTRIVAMATAGVEPRLMGLGPVPAVRKVLEIAGLSIHDMDLIELNEAFAAQALGVLRQLGLPDDAPHVNPNGGAIALGHPLGMSGARLTLTASLELHRRGGRYALCTMCIGVGQGIALILERVS
>NZ_CP009451.1|WP_038472113.1|125226_125652_+|hydroxyphenylacetyl-CoA-thioesterase-PaaI
MSTNAWDNARLMYARDNCAKQMGIEVIEMGDGFALLTMTITEAMLNGHQTCHGGQLFTLADTAFAYACNSQGLAAVASGCSIEFLRPGKAGDRLKAVAHVRQQGRQTGVYDIEIINQDEKTLALFRGRAHRIGTTLSGEKL
>NZ_CP009451.1|WP_038472111.1|123812_125237_+|3-hydroxyacyl-CoA-dehydrogenase
MLTPDAVIAVIGSGTMGAGIAQVAASAGHAVWLYDIQPGAAKRAIDGIDTALSARVAKGKLDDASRQSTLARLHPAETLADLAQAELAIEAAAEQIDIKQAIFRDLAAVCGADTVFASNTSSISITAIASGISHPARVVGLHFFNPAPVMKLVEVVSGLETSPEIAERLCELALRWGKQPVRCHSTPGFIVNRVARPFYAEAWRALEEQVAPAAAIDAALRDGAGFPMGPLALTDLIGQDVNFAVTCSVFNAFWQERRFLPSLTQQELVLGKRLGKKTGQGVYRWPLEAKPEYQPQMSEEFAAKQVTQSGKTLELDGIVVAITSGMTATAMSAELKRPVVLRDRLAESALEVLAPSASVTPQQLAKVTHYFQRQGKQVLVINDYPGMLAWRTVAMLANEALDALQKGVAGEADIDTAMQLGVNYPQGPLAWGARLGWQNVLTLLENLQRHYGEERYRPTSLLRQRALLENQHEH
>NZ_CP009451.1|WP_038472109.1|123021_123810_+|2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA-isomerase
MMSFIVSDVQNGVMTLTLNRPERLNSFNDEMHRQLAEILTQAERDETIRCLLITGAGRGFCAGQDLNDRNVDPSGDAPDLGYSVETFYNPLLRRLAKLPKPVIAAVNGVAAGAGATLALGCDMVIAARSAKFIMSFSKLGLVPDCGGTWFLPRLTGRARAMGLALLGDTLSAEQAHEWGMIWQVVDDEQLGDTARQLAQHFATQPTFGLGLIKKALYASETNTLDAQLDLERDYQRLAGRSEDYREGVSAFLAKRPATFKGK
>NZ_CP009451.1|WP_038472107.1|122254_123022_+|2,3-dehydroadipyl-CoA-hydratase
MSELLSQQSGRVLTLTLNRPQARNALNNALLTQIAEALEAAQQDESIGAVVITGNERFFAAGADLKEMASRDMPATLNDPRPQLWARIERFPKPLMTAVNGYALGAGCELALLSDIIVAGDNARFGLPEIMLGIMPGAGGTQRLIRSVGKALAYRMVLSGEAIDAPQALRAGLVAEVHPAALTLEYAQKLAASIARHAPLALQAAKNALQQAQNTGLSQGLLQERQLFTLLAATEDRQEGIAAFLEKRPAEFKGR
>NZ_CP009451.1|WP_038472105.1|121187_122255_+|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK
MTTFHSLKVARIEPETAEAVAITFAVPDALRGQYRFRPGQHLTLKARLGDEELRRCYSICRSDNPGEICVAVKAIEGGRFSQYAVSDLTAGMSLEVMVPQGTFGYQPEAETRGNYLALAVGSGITPMLAIIGATLATEPQSSVTLVYGNRSSASMMFRQALADLKDRYPQRLQLIYLFSQEKSDSELLSGRLDGAKLKQLGDHLLDVKGFDRTFICGPQSMMQAAEATLKEMGVAQQDIYLEHFNTPGVTPGARSRAQAAGKTVILRQDGVDRQITLTAGDESILDAALRQGADLPYACKGGVCATCRCKVLRGEVEMGVNYSLEPDQLAAGYVLSCQALPKGDDVVLDFDAQGL
>NZ_CP009451.1|WP_038472103.1|120685_121180_+|phenylacetate-CoA-oxygenase-subunit-PaaJ
MQTATLQPAAVRDVWRLLSEISDPEIPVLTITDLGMVRSVEHGADGWHIGFTPTYSGCPATEFLLAAIREAMEGAALSPVHIKLVLHPAWTTDWMSSEAKTRLREYGISPPQGHACHATVAAQVTCPRCGSEHTSLISEFGSTACKALYRCNTCREPFDYFKCI
>NZ_CP009451.1|WP_038472101.1|119919_120675_+|phenylacetate-CoA-oxygenase-subunit-PaaC
MTLDPVATYSLRLGDTCLVLAQRLSAWCGHAPELEIDLALANIGLDLLGQARNFLTYAAGREGEHLDEDRLAFGRDEREYRNLLLAEQPNGDFAETLVRQYLLDAWHVSLFSRLVESKDPQLAAIAAKAIKEVRYHLRFSRGWLVRLGNGTELSQAKAQSAVNKLWRFSGEMFVADELETTLAEQGIAVDPRGLKAEWLQEVTAGLSDASLQAPAEQPYRTGGKQGLHTEHLGPLLAEMQYLQRAYPNQQW
>NZ_CP009451.1|WP_008461407.1|119623_119911_+|1,2-phenylacetyl-CoA-epoxidase-subunit-B
MSKIYWPLYEVFIRNKKGLSHRHVGSLHAADDQMALENARDAYTRRSEGCSIWVVKASEIVASQPEERPEFFDPADSKVYRHPTFYTLPDGIEHM
>NZ_CP009451.1|WP_038472119.1|128582_129674_-|alkylhydroperoxidase-domain-protein
MSHSDLLNQLADIIPGTSLAEAREIREAATSHAQGSYEALFGETSASGLTLVERLHLARRVAEWHDDARLADHYTRRLAGKPASERFSTLLNHAERLSFQPVQAGSQDVNALTQAGFSEEEVVTLSQIIGFVAFQSRLLRGLRLIGGQPVDGEQVRIPAAGEWHRQPLTASGKSAPVAFTQAELNWEPWIAALPYAEYGPEQQETLKRFGHQDSDYFRLLGRNLPVLEQRTLTDKGIFYTPGGLPRAERELAATVASKVNGCIYCASVHARKASQLSKHNEAIERLLAIEPGGTLSDGQSPRWQAEINFSTALSSTPASANAQQIQALRELGLSELELLDLVQSTAFFAWANRLMLTLGEPFN
>NZ_CP009451.1|WP_038472121.1|129670_130717_-|putative-FMN-dependent-luciferase-like-monooxygenase
MTIKRLGFFTRLLDHAPAAERYRLATEQIIHAEWHGFDAAWVAQHHFHEAEGGLPAPLVFLSHVAAHTRRIRLGTGIITLPMESALRVAEDAVVLDLLSGGRFELGVGSGGTPGSFPAFGLLSAERGKIYADNLAILRSALNDEPLAGTDNHLYPASPQLKSRIWQATFSVDGGARAGKAGDGLMLSRTQPRPVDALDTPLDEIQNPIIDAYLDALPEGVEPRILGSRTGFVTDDAELARQLAARGLRQQAEQHRAQGHPVLGDTLDSHIAAFDVHLGTPQQVIASLLRDSTLQRVTDLSFQVHSIDPPHAYILRSIELLAQQVAPALGWVRSSAHPTATSSLSKESL
>NZ_CP009451.1|WP_038472123.1|130713_132333_-|ABC-transporter-ATP-binding-protein
MNTPLLKITNLSIAWRQRGGSRRVVHNASFSLHAGEVLAIVGESGSGKTTLAQSIIGLLGENGIIESGEIQLNGEPVSRWSERQLDALRGASISLIPQDPGSSLNPVKTIGQQVAEVLKLHTRQPKAERESQVVALLEKVGLSHPAQRANQYPHQLSGGMKQRVLIAMAIALKPALIIADEPTSALDVTVQKRILDLLDTLRRESGTAVLFVTHDLALAAQRSDRILVFRDGRIQESGPTAEVVKYPKNPYTRQLFADAPGLSRTLRPWPLRAPQTAAIEIRNLSQHFSLGKDSAQTLRALDDVSFTVAKGTTHALVGESGSGKSTLARILLGFQKPDAGKVLIDGIDTTDLSPEARRQLRQKIQLVYQNPFASLDPSQTLFRIIEEPLLNFGKLSKAERRAKVEAITERVALPLEALTRKPRELSGGQRQRVAIARALILEPQILVLDEATSALDVTVQAQILRLLDDLQRQLGLTYLFISHDLATVRQLAHSVSVLRAGELVDNGPIADVFNAPASDYTWQLLNAIPDIGSGHKDVA
>NZ_CP009451.1|WP_038472125.1|132329_133190_-|ABC-transporter-permease
MTTVDINTPLPRRTERRFSGFRASIQPGLWLAWLTLIIVALWALFPSLFTQWSPTEGVPGAQRLAPQAGHWLGTDQLGRDLYARIVWGASHSLSGALVAVALGLVVGTALGVLAGATGGKTEHALMRGVDVLLAIPGLLLSLSVIILLGFGTVNAAIAVGITSIANFTRLARAEVVRIRHSDYVEAAVGSGGTFLQVLWRHILPNALTSVFAFAALQFGSAILALSTLSFLGYGTPPPTPEWGLLIAEGRNYLATAWWLSTFPGVVVVAVVLAVNRLSHHFARRSS
>NZ_CP009451.1|WP_038472127.1|133186_134131_-|ABC-transporter-permease
MTRYLAGRTAQALLVLWAAYSVSFILLQLLPGDAILIKFQNPDLGLSAEQIQEMRVIYGESTPLWQQYLTTLGHMLRGDFGYSIEAGVSVSQLITANLPSTLRLAGLGFAAAIILAVGISAASTLAPLRWLRTLFANLPALFIAVPTFWLGIALIQLFSFHWRLIPVINPGFWQGLILPVATLAVPISAPLAQLLMRNIDQVLTQPYVAVARAKGGSRAGVLWRHVARNALLPVLTVAGLLLGELIAGALITETVFGLNGLGQLTQRAVNNQDVAVLQAVVMISALSFVVINLLVDVIYPLLDPRLKSIRGVTA
>NZ_CP009451.1|WP_038472129.1|134140_135766_-|TIGR04028-family-ABC-transporter-substrate-binding-protein
MPSSPRQTAIARGLALAAAFAAFSTSAAPIKGGELVYLEQQAHTNLYPPAGGFYPNGGILNQVTDKLTWQNPKTLEVEPWIAESWTSNADKTEYTFKLRPGVTFSDGTPLDANAVAKNFDTYGLGNKALRLPVSEVINNYDHSEVIDPLTVKFFFKKPSPGFLQGTATIGSGLVSLKTLARNFDELGDARNIIGSGPFVVQNETLGREVDLVARKDYQWGPKNSPQQGPANLDGIKILVTPEDSVRIGALLAGQADFIRQVQAYDEKQATDQKFPVYAAPTRGVNDGIALRPDNPLVADVKVRQALLHGTNAQQVVDTLFSANYPVATSVIASTAAGYVDLRDKLKYDPTLANKLLDDAGWKKGSNGIREKDGKPLALTIYESLPQPQNKEVLQLVAQQWKQIGVGLSVRAGDAGSRVLDTNNPQKTGVNVIEVGRADPDVIKSQFHPANRDALLQKGGLSATSQFSDDKLNALLVGISSEVDPQKRLVLAGDAQRYLIDQAYVIPIFEEPQVFAGAPWLKGVAFEAVGRPSFYAAWLEKH
>NZ_CP009451.1|WP_038472131.1|135884_136124_-|DUF2554-family-protein
MALKNQLSIILLLIVTALFSGQTLAERHGHEYFVVKDIDIQLSHQADSDELRQAAEDSADDFREHHHAVTHRRPATYLR
>NZ_CP009451.1|WP_038472133.1|136320_136644_-|AzlD-domain-containing-protein
MTYTLTVLAGLAVLSAGTWLMRFTGAKLGNKMALSDRAQKLLNDGATTLLFSVALATTFFEGSHFAGYARFAGVAVAVFLAWRKVPLIFVIIAAALVTALLRLAGIH
>NZ_CP009451.1|WP_038482572.1|136643_137303_-|AzlC-family-ABC-transporter-permease
MRAHLRTLPGDTKKAIFLVCLAVGVVGVSYGSLAMAYGFPLWLPVLASFVVLAGASEFMFIGIIASGGNPFAAAMAGLLVNARHIPFGVAVRELVGTRLLSLLGCHIMNDESVVFGLSQATPEKRKAAYWLCGAGVALFWPAGTLLGAAVGSLLPSPEVIGLDAVFPAILLALVIPAFKSRTTLVRASTGAAISLAATPFAPVGLPVLLSMLGLLARKK
>NZ_CP009451.1|WP_038472135.1|137408_137957_+|helix-turn-helix-transcriptional-regulator
MTQPIDTIARSLARERGRAGLSLAEVARRAGIAKSTLSQLEAGNGNPSLETLWALCVALNIPFATLLEPQSARTQIIRRGEGSRISAEQANYVAILLASCPPGVRRDIYLVEAQPGTPRLSEPHPPGSVEHMIVTQGRALVGLTESAEELAVGDYICYPADQPHIFRALEPDTMAIMVAEQN

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Crispr_ID: NZ_CP009451_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009451_2

2914540-2914624

Orphan

Consensus_repeat	Method
TTTTGTTTGCACCCTCTCCCTGTGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009451_2

>merge|NZ_CP009451|2|2914540-2914624|CRISPRCasFinder
TTTTGTTTGCACCCTCTCCCTGTGGGAGAGGGGCGGGGTGAGGGCATCAGGCAACCCCGTTTTGTTTGCACCCTCTGCCTGTGGG

>NZ_CP009451|2|2|2914540-2914624|CRISPRCasFinder
TTTTGTTTGCACCCTCTCCCTGTGGG	AGAGGGGCGGGGTGAGGGCATCAGGCAACCCCG
TTTTGTTTGCACCCTCTGCCTGTGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009451.1\|WP_081948189.1\|2913792_2914506_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivF	unknown	unknown	gnl\|CDD\|183231
NZ_CP009451.1\|WP_038477938.1\|2916533_2917421_+\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpA	unknown	unknown	gnl\|CDD\|182550
NZ_CP009451.1\|WP_038477950.1\|2920078_2920444_-\|DUF2756-family-protein	unknown	unknown	gnl\|CDD\|182398
NZ_CP009451.1\|WP_038477964.1\|2925026_2925722_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|380375
NZ_CP009451.1\|WP_038477920.1\|2908763_2909144_-\|aspartate-1-decarboxylase-autocleavage-activator-PanM	unknown	unknown	gnl\|CDD\|380212
NZ_CP009451.1\|WP_038477923.1\|2910823_2911750_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH	unknown	unknown	gnl\|CDD\|182689
NZ_CP009451.1\|WP_162473298.1\|2906968_2908072_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|237959
NZ_CP009451.1\|WP_038477947.1\|2919333_2920074_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236524
NZ_CP009451.1\|WP_038477914.1\|2905466_2906711_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|223884
NZ_CP009451.1\|WP_038477907.1\|2902459_2903950_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP009451.1\|WP_038477941.1\|2917417_2918263_+\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpE	unknown	unknown	gnl\|CDD\|182875
NZ_CP009451.1\|WP_038477910.1\|2904068_2905334_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|180690
NZ_CP009451.1\|WP_038477926.1\|2911746_2913027_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM	unknown	unknown	gnl\|CDD\|236896
NZ_CP009451.1\|WP_038477953.1\|2920566_2922309_+\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|181992
NZ_CP009451.1\|WP_038477956.1\|2922816_2923314_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182263
NZ_CP009451.1\|WP_038477935.1\|2915099_2916416_+\|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB	unknown	unknown	gnl\|CDD\|182876
NZ_CP009451.1\|WP_038477944.1\|2918266_2919337_+\|sn-glycerol-3-phosphate-import-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NZ_CP009451.1\|WP_038483119.1\|2909542_2910652_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-substrate-binding-protein-LivK	unknown	unknown	gnl\|CDD\|237959
NZ_CP009451.1\|WP_038477959.1\|2923865_2924903_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|182305
NZ_CP009451.1\|WP_038477929.1\|2913023_2913791_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivG	unknown	unknown	gnl\|CDD\|183080

Protein	Function_ID	Function_description	E-value
NZ_CP009451.1\|WP_081948189.1\|2913792_2914506_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivF	gnl\|CDD\|183231	PRK11614, livF, high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF.	1.70072e-171
NZ_CP009451.1\|WP_038477938.1\|2916533_2917421_+\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpA	gnl\|CDD\|182550	PRK10561, PRK10561, sn-glycerol-3-phosphate ABC transporter permease UgpA.	0
NZ_CP009451.1\|WP_038477950.1\|2920078_2920444_-\|DUF2756-family-protein	gnl\|CDD\|182398	PRK10350, PRK10350, DUF2756 family protein.	1.58716e-16
NZ_CP009451.1\|WP_038477964.1\|2925026_2925722_+\|pirin-family-protein	gnl\|CDD\|380375	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain. This family includes the N-terminal cupin domains of YhhW and YhaK, Escherichia coli pirin-like proteins with unknown function. YhhW is structurally similar not only to human pirin but also to quercitin 2,3-dioxygenase (quercitinase). Although the function of YhhW is not completely understood, YhhW and its human ortholog have quercitinase activity and are likely to play an important role in transcription and apoptosis. This N-terminal cupin domain of YhhW has a metal coordination site and is thought to have catalytic activity while the C-terminal cupin-like domain has diverged considerably and has closer alignment with C-terminal pirin. YhaK is found in low abundance in the cytosol of E. coli and is strongly up-regulated by nitroso-glutathione (GSNO). There are major structural differences at the N-terminus of YhaK compared with YhhW; YhaK lacks the canonical cupin metal-binding residues of pirins and may be involved in chloride binding and/or sensing of oxidative stress in enterobacteria. YhaK showed no quercetinase and peroxidase activity; however, reduced YhaK was very sensitive to reactive oxygen species (ROS). Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	5.73727e-80
NZ_CP009451.1\|WP_038477920.1\|2908763_2909144_-\|aspartate-1-decarboxylase-autocleavage-activator-PanM	gnl\|CDD\|380212	NF033213, matur_PanM, aspartate 1-decarboxylase autocleavage activator PanM. Members of this family, called PanM (or PanZ), although related to the GNAT family N-acetyltransferases, have a different function. Then enzyme PanD, aspartate 1-decarboxylase, has an active site modified Ser residue, created by cleavage of a precursor form. PanM promotes the maturation of the CoA biosynthesis enzyme PanD, but also inhibits its activity in the presence of CoA. Figure 6 in PMID:26276430 identifies residues considered critical to interaction with PanD; seed alignment sequences and cutoff scores were chosen to separate proposed PanM from functionally distinct relatives.	1.10137e-76
NZ_CP009451.1\|WP_038477923.1\|2910823_2911750_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH	gnl\|CDD\|182689	PRK10740, PRK10740, high-affinity branched-chain amino acid ABC transporter permease LivH.	0
NZ_CP009451.1\|WP_162473298.1\|2906968_2908072_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|237959	PRK15404, PRK15404, high-affinity branched-chain amino acid ABC transporter substrate-binding protein.	0
NZ_CP009451.1\|WP_038477947.1\|2919333_2920074_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236524	PRK09454, ugpQ, cytoplasmic glycerophosphodiester phosphodiesterase; Provisional.	6.18642e-170
NZ_CP009451.1\|WP_038477914.1\|2905466_2906711_+\|amino-acid-permease	gnl\|CDD\|223884	COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism].	1.2823e-47
NZ_CP009451.1\|WP_038477907.1\|2902459_2903950_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.27691e-138
NZ_CP009451.1\|WP_038477941.1\|2917417_2918263_+\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpE	gnl\|CDD\|182875	PRK10973, PRK10973, sn-glycerol-3-phosphate ABC transporter permease UgpE.	0
NZ_CP009451.1\|WP_038477910.1\|2904068_2905334_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|180690	PRK06777, PRK06777, 4-aminobutyrate--2-oxoglutarate transaminase.	0
NZ_CP009451.1\|WP_038477926.1\|2911746_2913027_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM	gnl\|CDD\|236896	PRK11301, livM, leucine/isoleucine/valine transporter permease subunit; Provisional.	0
NZ_CP009451.1\|WP_038477953.1\|2920566_2922309_+\|gamma-glutamyltransferase	gnl\|CDD\|181992	PRK09615, ggt, gamma-glutamyltranspeptidase; Reviewed.	0
NZ_CP009451.1\|WP_038477956.1\|2922816_2923314_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182263	PRK10140, PRK10140, N-acetyltransferase.	4.4082e-77
NZ_CP009451.1\|WP_038477935.1\|2915099_2916416_+\|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB	gnl\|CDD\|182876	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB.	0
NZ_CP009451.1\|WP_038477944.1\|2918266_2919337_+\|sn-glycerol-3-phosphate-import-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
NZ_CP009451.1\|WP_038483119.1\|2909542_2910652_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-substrate-binding-protein-LivK	gnl\|CDD\|237959	PRK15404, PRK15404, high-affinity branched-chain amino acid ABC transporter substrate-binding protein.	0
NZ_CP009451.1\|WP_038477959.1\|2923865_2924903_+\|oxidoreductase	gnl\|CDD\|182305	PRK10206, PRK10206, putative oxidoreductase; Provisional.	0
NZ_CP009451.1\|WP_038477929.1\|2913023_2913791_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivG	gnl\|CDD\|183080	PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional.	0

>NZ_CP009451.1|WP_081948189.1|2913792_2914506_+|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivF
MENVMLSFDKVSAHYGKIQALHEVSLHIKQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRVVFDGKDITDWHTARIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQDRIKRVYDLFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRSEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRSAYLGG
>NZ_CP009451.1|WP_038477929.1|2913023_2913791_+|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivG
MSQPLLSVSGLMMRFGGLLAVNNVSLELHPQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGVFSGLLKTPGFRRAQSEALDRAATWLERIGLLEHANRQASNLAYGDQRRLEIARCMVTQPEILMLDEPAAGLNPKETHELDELIMELRNHHNTTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNPDVIRAYLGEA
>NZ_CP009451.1|WP_038477926.1|2911746_2913027_+|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM
MKPMHVIFSLLSAAMFFVLASVFMGVQLSLDGTKLVVNSAPSVRWEWVYIGTAVVLVFQLLRPLFQKGMKKVSGPKFVLPALDGSTVKQKLFLVALLVAAVAWPFLVSRGTVDIATLTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPLAGLVAAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTFFGLEFSRTAREGGWDTFSNFFNVAYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPLGRAWEALREDEIACRSLGLNPTRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAVLLVVSRELMRDLNEYSMLVLGGLMVLMMIWRPQGLLPMTRPHVKLRKEQVVKGEQA
>NZ_CP009451.1|WP_038477923.1|2910823_2911750_+|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH
MSEQFLYFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMIIAALMMLGIDVGWMLVGAGFIGAIIIASAYGWSIERVAYRPVRNSKRLIALISAIGMSIFLQNYVSLTEGSRDVALPSLFNGQWIVGASDNFTATITTMQLVIWVVTFLAMLALTLFIRYSRMGRACRACAEDLKMASLLGINTDRVISLTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGVAEALTSAYLSTEYKDVVSFALLIVVLLVMPTGILGRPEVEKV
>NZ_CP009451.1|WP_038483119.1|2909542_2910652_+|high-affinity-branched-chain-amino-acid-ABC-transporter-substrate-binding-protein-LivK
MKMNAKTLLAGLVALAVSHAATAGDIKVAVVGAMSGPVAQWGDMEFNGARQAIKDINARGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDGVKYVIGHLCSSSTQPASDIYEDEGILMITPGATNPELTQRGYGMIMRTAGLDSSQAPTASKFILEHVKPQRIAIIHDKQQYGEGLARAVQDGLKKGGANIVFFDGITAGDKDFSTLVARLQKENIDFVYYGGYYPEMGQILRQARAVGLKTQFMGPEGVGNASLSNIAGPAGEGMLVTMPKRYDQDPANKAIVDELKAAKKDPSGPYVWITYAAVQSLATAMDRSGSKDPAALVKDLKAHGANTVIGPLNWDEKGDLKGFEFGVFQWHADGSSSVAK
>NZ_CP009451.1|WP_038477920.1|2908763_2909144_-|aspartate-1-decarboxylase-autocleavage-activator-PanM
MKLTIIRLFEFSAQDKIDLGKIWPEYSSDSLTLSDNERIYAAKFNDRLLGAVRVTLTGKQGALDSLRVREITRRRGVGQYLLEEVMRDNPVITHWWLAGVGVEDHDVMTAFMQASGFRELSGGWEK
>NZ_CP009451.1|WP_162473298.1|2906968_2908072_+|high-affinity-branched-chain-amino-acid-ABC-transporter-substrate-binding-protein
MKMTGKALLAGCIALAMSHAAMAKDIKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGDKLVITKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTARGYKLTLRTTGLDSDQGPTAAKYILEHVKPKRIAVIHDKQQYGEGLARSVQDGLKKGGANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQSRAAGLKTQFMGPEGVANVSLSNIAGDSAEGLLVTKPKNYDQVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLAAGLNQSEDPAAISKYLKGATVDTVMGPLSWDQKGDLKGFEFGVFTWHANGTATDAK
>NZ_CP009451.1|WP_038477914.1|2905466_2906711_+|amino-acid-permease
MSENSTFSPAIARGERTAVPGKSLSFVEGVSMIVGTNIGAGVLSIAYASSKAGFWPLLFWLVLVGSLTTVTMLYVAESTLRTRQHLQLSGLSLRYVGRFGALMMFLSVCVNSVGALTAYMTGSGKLLHSLFGISPALGSVLFFIPAAGVLYMGLKAIGRGEKFISIGMVVMIAVLVIATLLKETTSVGYLLEGNWLYMVPVFNVVVFCFSAQYIVPEMARGFADKPEKLPKAIIVGMVVTFALLALVPMSVIMLNGLDDISEVATISWGKALGEWAFFSANLFALCAMLTSYWGLGGSFLTNIFDRFRLGSDELSLKRFLVLLVVAIPPFVLAYSGLVSFVNALYFAGVFSGVILSIMPILMIKGARRSGDVSPGWTCPPFMTHPLIQIFIVLLYLCSAVYAVASALGYLPAGW
>NZ_CP009451.1|WP_038477910.1|2904068_2905334_+|4-aminobutyrate--2-oxoglutarate-transaminase
MKSAELNQRRLQATPRGVGVMCSYFAEKAENATLWDVEGNEVIDFAAGIAVLNTGHRHPKVIAAVEKQLQAFTHTAYQIVPYESYVSLAERINDLAPIDGPAKTAFFTTGAEAVENAVKIARAYTKRPGLITFGGGFHGRTFMTMALTGKVAPYKIGFGPFPGSVYHAVYPNAAHGVTTEDALKSLDRIFKADIAADQVAAIVLEPIQGEGGFNVAPPEFMQALRKLCDTHGILLIADEVQTGFARTGKLFAMDYYDVKADLMTMAKSLAGGFPLSGVVGRAEVMDAPAPGGLGGTYAGNPLAVAAAHAVLDVIKEEQLCKRANQLGEHLKEVLNQARQGCPAIVDVRGQGSMVAVEFNDPQTGKPSPEFTREVQLKAQEQGLLLLSCGVYGNVIRFLYPLTIPDAQFTKALAILSQVLKG
>NZ_CP009451.1|WP_038477907.1|2902459_2903950_-|PLP-dependent-aminotransferase-family-protein
MRDLVGDLILVRLQEETDNLLHKRLYNALRRSILDGSLPPHGRLPASRDLASELSISRNTVLTVYEQLMTEGYVSSRQGSGTFVEKTLPDRFTSAGNVGESGAPPAPEVSISRRGLHLLSQVSASPRQWGAFIPGVPDVNAFPHPLFSKIQARISRRPKPERLSYSCNGGTPELQHALVDYLRVSRGVNCQVDQILITEGIHQAIDLVTRMLCDRGDLAWIEEPSYWGIRHVLTMNDVRITPLTVDANGLCPPETVTEAPRLIFVTPSHQYPLGAVMSLERRQRLLALARQHGSWIIEDDYDSEFRFSGQPIPALQGLVAEAPVVYIGTFSKTLYPGLRLGYVVLPRPLINDLKTAHAELYRGGHSLIQQALAEFITAGHYSAHIRRMRLLYGRRRAFLTELISRHCGPQALSDFSDNAGLHLILNLPDEADDVAIAQRANARNILVRPLSRYYLTGQRKKGLLMGFASLPESEMEAAFAVLLECMPEAKKQNAPA
>NZ_CP009451.1|WP_038477935.1|2915099_2916416_+|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB
MTSLRHTALALTLGLAFASQAMAVTTIPFWHSMDGELGKEVDSLANRFNETHPDYKIVPVYKGNYEQSLAAGIAAYRSGNAPAILQVYEVGTATMMASKAIKPVYEVFKDAGISFDESQFVPTVAGYYTDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGLNPDQPPKTWQDVADYSAKLRAAGMKCGYASGWQGWIQLENFSAWHGLPFATKNNGFDGTDAVLEFNKPEQVKHIALLEAMNKKGDFTYYGRKDESTEKFYNGDCAITTASSGSLADIRQYAKFNYGVGMMPYDADVKGAPQNAIIGGASLWVMQGKDKPTYTGVAEFMQFLAKPEIAAEWHQKTGYLPITTAAYDLTRKEGFYDKNPGADTATRQMLNKPPLPFTKGLRLGNMPQIRTVVDEELESVWTGKKTPQQALDASVERGNQLLRRFEQSTKS
>NZ_CP009451.1|WP_038477938.1|2916533_2917421_+|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpA
MSSSRPVFRSSWLPYALVLPQLIITVIFFIWPAGEALWYSLQNLDPFGLSSHFVGLDNFVQLFHDSYYLDSFYTTIIFSGLVAGCGLLASLFFAALVDYVVRGSRLYQTLMLLPYAVAPAIAAVLWIFLFNPGRGLITHVLEEFGYNWNHAQNSGQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPVRRFFFISLPLIAPVSFFLLVVNLVYAFFDTFPVIDAATGGGPVQATTTLIYKIYREGFAGLDLSSSAAQSVVLMLLVIVLTVVQFRFVERKVRYQ
>NZ_CP009451.1|WP_038477941.1|2917417_2918263_+|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpE
MIENRRGLTIFSHTMLILGIIVILFPLYVAFVAATLDNKAVFDTPMTLIPGTHLWENISYIWTNGVAVNSAPFSSLLFNSTVMALVITIGKIAVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVISNLKMLDSYTGLTLPLMASATATFLFRQFFMTLPDELMEAARIDGASPMRFFFDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDADLGTAVAGIKGMIASGDGVTQWNQVMAAMLLTLVPPVVIVLVMQRAFVRGLVDSEK
>NZ_CP009451.1|WP_038477944.1|2918266_2919337_+|sn-glycerol-3-phosphate-import-ATP-binding-protein-UgpC
MAGLKLQAVTKSWDGKTQVIQPLTVDVADGEFIVMVGPSGCGKSTLLRMVAGLEQVTSGDIWIDSQRVTDMEPKERGIAMVFQNYALYPHMTVEENMAWGLKIRGLGKEQIRLKVLEAARILELDALLTRRPRELSGGQRQRVAMGRAIVRDPAVFLFDEPLSNLDAKLRVQMRLELQQLHRRLKTTSLYVTHDQVEAMTLAQRVMVMNKGIAEQIGTPVEVYERPASRFVASFIGSPAMNLLDGNISIDGSRFELNGGDALPMGSQRLQWVGRPMTLGIRPEHIAISSQEAGGIPILVETLEMLGADNLVHGRWGGQKVVIRLGHQERPQPGTTLWVHLPEEHLHFFDGKNGQRL
>NZ_CP009451.1|WP_038477947.1|2919333_2920074_+|glycerophosphodiester-phosphodiesterase
MSNWPYPKIVAHRGGGKLAPENTLAAIDVGARYGHTMIEFDAKLSRDGQIFLLHDDTLERTSNGWGIAGELSWDNLLKVDAGSWFSREFAGEPLPLLSQVAERCKQHGMMANIEIKPTTGLETETGKVVALAARELWAGQTAPLLSSFEVEALEAAQLAAPELPRGLLLDEWRDDWQELTTRLQCVSIHLNHQLLDEARVKALKAAGLYILVYTVNVPHRAAVLLQWGVDAICTDRIDEIGPNFSA
>NZ_CP009451.1|WP_038477950.1|2920078_2920444_-|DUF2756-family-protein
MKKVWLLAALLPLTALAQPLNTTNNPNQPGYQNPSQQRMLTQMQTQQSQQQGMLKQQRQSQNQLQQQQLQTQLNNNQQRVLQSQPGMSQQPLPNTNGGMLKGNSGGMLKQSGSTLPPPVTP
>NZ_CP009451.1|WP_038477953.1|2920566_2922309_+|gamma-glutamyltransferase
MIKQWKILRWVAIPALTIGLCLTVIAAPPPVSYGVEMDVYHPVRAEHGMVASVDAAATQVGVDILKQGGNAVDAAVAVGYALAVTHPQAGNIGGGGFMMLRTKDGKTTAIDFREMAPEKASRDMFLDDKGNADSKKSLTSHLASGTPGTVAGFSLALEKYGTLPLNKVVQPAIKLARDGFIVNDALADDLKQYGAEVIPNHANSKAIFWKADGEPLQKGDKLVQANLAKSLEMIAEQGPDAFYKGAIADQITEEMAKNGGLISKADLANYKAIERQPVSGEYRGYEVYSMPPPSSGGIHIVQILNILENFDLAKYGFGSADTLQIMAEAEKYAYADRSEYLGDPDFVKVPWQALTSKAYAKSLAGKIDINKARPSSDIKPGNLAPYESNQTTHFSVVDKDGNAVAVTYTLNTTFGTGIVAGNTGILMNNQMDDFSAKPGVPNVYGLVGGEANAVGPHKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNSIDFGMNVAEATNAPRFHHQWLPDELRVEKGFSPDTLRLLKEKGQNVEVKAAMGSTQSIMIAPDGKLYGASDPRSVDDLTAGY
>NZ_CP009451.1|WP_038477956.1|2922816_2923314_-|GNAT-family-N-acetyltransferase
MKSVVVRHAEPGDAEALQKMYAHPALYRDTLQLPHPPLKAWHDRITDPRPGSRHLVACIGDEIVGQLTLTVEQSPRRSHVATFGMGVHYDHQGKGIASALLKEMIALCDKWLRVERIELTVYTDNAPALAVYRKFGFEVEGTGKLFALRDGEYVDAYFMARFKPG
>NZ_CP009451.1|WP_038477959.1|2923865_2924903_+|oxidoreductase
MTLHCAFIGFGKSTTRYHLPFVLFRKDRLNVAHIFRRSEKPELEQQPQYAGIHFTSQLDDILTDPQVKLVVICTHVDSHFEYAKKALEAGKNVLVEKPFTPTLAEARELFALASEKGLVVTPYQNRRFDSCFLTMKKAIESGKLGKIVEIESHFDMYRPDAPANPGQPADGAFYGLGVHTMDQIISLFGRPEHVAYDIRSLRNKANPDDTFEAQLFFGDLKAIVKTSHLVKIDYPKFIVHGTKGSFVKYGIDQQETSLKAYIMPGELGFGADSSVATLEYVNEAGETVREEWKPEVGDYGRVYDALYDTLIGGKPNYVREIEALTNLEILERGFEQPSPATISLS
>NZ_CP009451.1|WP_038477964.1|2925026_2925722_+|pirin-family-protein
MIYLRKAQDRGHANHGWLDSWHTFSFADYYDANFMGFSALRVINEDVIDAGQGFGTHPHKDMEILTYVLEGAVEHQDSMGNKERVPAGEFQIMSAGTGIRHSEYNASQTEPLRLYQIWIIPEKTGITPRYDQRRFDAPQGRQLVLSPDTRDGSLKVYQDMELSRWALAKDEQSVYQIPADRRVWIQVVKGDVSINGTQAKTSDAIAVWDEQAISVHASEASEILLFDLPPV

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Crispr_ID: NZ_CP009451_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009451_3

3184485-3184556

Orphan

Consensus_repeat	Method
CCCTCTCCCTAAAAGGGAGAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009451_3

>merge|NZ_CP009451|3|3184485-3184556|CRISPRCasFinder
CCCTCTCCCTAAAAGGGAGAGGGGGAAGTGCAGGCGACTCTGTTTTATCCCCTCGCCCTAAAAGGGAGAGGG

>NZ_CP009451|3|3|3184485-3184556|CRISPRCasFinder
CCCTCTCCCTAAAAGGGAGAGGG	GGAAGTGCAGGCGACTCTGTTTTATC
CCCTCGCCCTAAAAGGGAGAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009451.1\|WP_038478591.1\|3176673_3179064_+\|family-20-glycosylhydrolase	unknown	unknown	gnl\|CDD\|119338
NZ_CP009451.1\|WP_038478620.1\|3187371_3188376_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
NZ_CP009451.1\|WP_038478595.1\|3179118_3179505_-\|2-iminobutanoate/2-iminopropanoate-deaminase	unknown	unknown	gnl\|CDD\|105214
NZ_CP009451.1\|WP_038478588.1\|3173840_3176558_+\|magnesium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|236705
NZ_CP009451.1\|WP_038478629.1\|3189788_3190604_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009451.1\|WP_038478617.1\|3185500_3186721_-\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949
NZ_CP009451.1\|WP_038478635.1\|3192797_3194126_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|183266
NZ_CP009451.1\|WP_038483153.1\|3190695_3191286_+\|transcriptional-regulator-UhpA	unknown	unknown	gnl\|CDD\|182408
NZ_CP009451.1\|WP_038478613.1\|3184572_3185487_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|183466
NZ_CP009451.1\|WP_038478585.1\|3172389_3173337_-\|HTH-type-transcriptional-regulator-TreR	unknown	unknown	gnl\|CDD\|181905
NZ_CP009451.1\|WP_038478582.1\|3170850_3172269_-\|PTS-trehalose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|182896
NZ_CP009451.1\|WP_038478626.1\|3189015_3189777_+\|tRNA-isopentenyl-2-thiomethyl-A-37-hydroxylase-MiaE	unknown	unknown	gnl\|CDD\|226853
NZ_CP009451.1\|WP_038478623.1\|3188539_3188968_+\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
NZ_CP009451.1\|WP_038478601.1\|3180056_3180989_-\|aspartate-carbamoyltransferase	unknown	unknown	gnl\|CDD\|223614
NZ_CP009451.1\|WP_038478609.1\|3183434_3184439_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179366
NZ_CP009451.1\|WP_038478606.1\|3181891_3183361_-\|arginine-ornithine-antiporter	unknown	unknown	gnl\|CDD\|163522
NZ_CP009451.1\|WP_038483150.1\|3181256_3181736_-\|ArgR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224355
NZ_CP009451.1\|WP_038478632.1\|3191285_3192788_+\|signal-transduction-histidine-protein-kinase/phosphatase-UhpB	unknown	unknown	gnl\|CDD\|236945
NZ_CP009451.1\|WP_038478639.1\|3194264_3195656_+\|hexose-6-phosphate:phosphate-antiporter	unknown	unknown	gnl\|CDD\|236564
NZ_CP009451.1\|WP_038478598.1\|3179578_3180040_-\|aspartate-carbamoyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|234859

Protein	Function_ID	Function_description	E-value
NZ_CP009451.1\|WP_038478591.1\|3176673_3179064_+\|family-20-glycosylhydrolase	gnl\|CDD\|119338	cd06570, GH20_chitobiase-like_1, A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	8.29148e-162
NZ_CP009451.1\|WP_038478620.1\|3187371_3188376_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NZ_CP009451.1\|WP_038478595.1\|3179118_3179505_-\|2-iminobutanoate/2-iminopropanoate-deaminase	gnl\|CDD\|105214	PRK11401, PRK11401, enamine/imine deaminase.	9.71434e-66
NZ_CP009451.1\|WP_038478588.1\|3173840_3176558_+\|magnesium-translocating-P-type-ATPase	gnl\|CDD\|236705	PRK10517, PRK10517, magnesium-transporting P-type ATPase MgtA.	0
NZ_CP009451.1\|WP_038478617.1\|3185500_3186721_-\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0
NZ_CP009451.1\|WP_038478635.1\|3192797_3194126_+\|MFS-transporter	gnl\|CDD\|183266	PRK11663, PRK11663, glucose-6-phosphate receptor/MFS transporter UhpC.	0
NZ_CP009451.1\|WP_038483153.1\|3190695_3191286_+\|transcriptional-regulator-UhpA	gnl\|CDD\|182408	PRK10360, PRK10360, transcriptional regulator UhpA.	9.39579e-135
NZ_CP009451.1\|WP_038478613.1\|3184572_3185487_-\|carbamate-kinase	gnl\|CDD\|183466	PRK12354, PRK12354, carbamate kinase; Reviewed.	0
NZ_CP009451.1\|WP_038478585.1\|3172389_3173337_-\|HTH-type-transcriptional-regulator-TreR	gnl\|CDD\|181905	PRK09492, treR, HTH-type transcriptional regulator TreR.	0
NZ_CP009451.1\|WP_038478582.1\|3170850_3172269_-\|PTS-trehalose-transporter-subunit-IIBC	gnl\|CDD\|182896	PRK11007, PRK11007, PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional.	0
NZ_CP009451.1\|WP_038478626.1\|3189015_3189777_+\|tRNA-isopentenyl-2-thiomethyl-A-37-hydroxylase-MiaE	gnl\|CDD\|226853	COG4445, MiaE, Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	5.29625e-102
NZ_CP009451.1\|WP_038478623.1\|3188539_3188968_+\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	5.00437e-66
NZ_CP009451.1\|WP_038478601.1\|3180056_3180989_-\|aspartate-carbamoyltransferase	gnl\|CDD\|223614	COG0540, PyrB, Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism].	2.45953e-164
NZ_CP009451.1\|WP_038478609.1\|3183434_3184439_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179366	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated.	0
NZ_CP009451.1\|WP_038478606.1\|3181891_3183361_-\|arginine-ornithine-antiporter	gnl\|CDD\|163522	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP009451.1\|WP_038483150.1\|3181256_3181736_-\|ArgR-family-transcriptional-regulator	gnl\|CDD\|224355	COG1438, ArgR, Arginine repressor [Transcription].	1.127e-38
NZ_CP009451.1\|WP_038478632.1\|3191285_3192788_+\|signal-transduction-histidine-protein-kinase/phosphatase-UhpB	gnl\|CDD\|236945	PRK11644, PRK11644, signal transduction histidine-protein kinase/phosphatase UhpB.	0
NZ_CP009451.1\|WP_038478639.1\|3194264_3195656_+\|hexose-6-phosphate:phosphate-antiporter	gnl\|CDD\|236564	PRK09556, uhpT, hexose-6-phosphate:phosphate antiporter.	0
NZ_CP009451.1\|WP_038478598.1\|3179578_3180040_-\|aspartate-carbamoyltransferase-regulatory-subunit	gnl\|CDD\|234859	PRK00893, PRK00893, aspartate carbamoyltransferase regulatory subunit; Reviewed.	5.80236e-83

>NZ_CP009451.1|WP_038478609.1|3183434_3184439_-|ornithine-carbamoyltransferase
MTINLKNRNFLKLLDFKPAEIQYLIDLARDLKAAKQAGTEKKTLCGKNIALIFEKTSTRTRCAFEVGAFDQGALVTYLGPSGSQIGHKESMKDTARVLGRMYDGIEYRGYGQDIVEELGEFAGVPVWNGLTNEFHPTQILADLMTMLEHAPGKKLKDLSFAYLGDARNNMGNSLMVGAAKMGMDIRLVAPKAFWPEAALVEQCRAIAKETGGRIMLTDSVAEGVAGVDFLYTDVWVSMGEPKEAWAERVSIMTPYQINQNVLNATGNPNVKFMHCLPAFHNEHTKVGKEIEETYGLKGLEVTEEVFESKHSIVFDEAENRMHTIKAVMVATLGA
>NZ_CP009451.1|WP_038478606.1|3181891_3183361_-|arginine-ornithine-antiporter
MADVIHEGATDTSASSERKLGLSALVALVIGSMIGGGVFSLPQNFASVASPGALLIGWVITGVGMLCLAFIYQNLSARCPDLDGGVYSYARAGFGDFIGFQSAWGYWFSAWLGNVSYAVLLFSAMSFFIPVFGDGNNLPSIIGASIVLWLVHALVLRGVREAAYINTILTVVKVIILLVFIVAVLIAFRIGVFTADFWGRMMLVEGSRPEIFDQVKNTMLVTTWVFIGIEGATVVSARAAKREDIGKATVIGLLGALAIYVLVSVLSMGILDQASLAGLKNPSMAGVLESVVGPWGAKFVAGGVILSVAGALLAWTLFAAELPRVAAIDGIFPKVFAKENARHSPSFSLWITNGLIQIFLILTLFYAAGYQALFSIATAAILPPYLFSAAYGLKLAWTGERYKQGESRTGGIVLGLIATVYGFWLCYAAGDSMLLSSLLFTPGILVFLWQKKSQGQPLLKSYELAIAIAILALAAWTLKLVISGNLQIS
>NZ_CP009451.1|WP_038483150.1|3181256_3181736_-|ArgR-family-transcriptional-regulator
MRISRLSSEKEQRQLELCQQLISHKSYHSQEQLRHDLKQHGFEAISQSTVSRLLKLLGVIKMRNAKGQKIYALSPMTLPQPNAARSVAEMVISVEHNREFVMVHTVSGYGRAIAKILDHHAIAEILGVVAGSSVVWIAPREIRKTPQVHHRIMRTLGLA
>NZ_CP009451.1|WP_038478601.1|3180056_3180989_-|aspartate-carbamoyltransferase
MTNPLYKKHIISINDLSREELELVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSIHRLGASVVGFSDSSNTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGEIPVLNAGDGANQHPTQTLLDLFTIQETQGRLENLNIAMVGDLKYGRTVHSLAQALAKFNGNRFYFIAPAALAMPQYILDMLDEKGIAWSRHESIDDVVGELDILYMTRVQKERLDPSEYANVKAQFILRAADLTGARSNMKVLHPLPRVDEITTDVDSTPHAWYFQQAGNGIFARQALLALVLNRELV
>NZ_CP009451.1|WP_038478598.1|3179578_3180040_-|aspartate-carbamoyltransferase-regulatory-subunit
MTHDNKLQVEAIKRGTVIDHIPAQVGFKLLTLFQLTKTDQRITIGLNLPSRELGRKDLIKIENTFLTDEQVNQLALYAPNATVNRIDEYEVVGKSTPSLPERIEKVLHCPNTNCISHNEPVASSFAVKQRADDISLKCKYCEKEFARHVVTAD
>NZ_CP009451.1|WP_038478595.1|3179118_3179505_-|2-iminobutanoate/2-iminopropanoate-deaminase
MSRTLSTENAPAAIGPYVQGVDLGSMIITSGQIPVNPKTGEVPEDVAAQARQSLENVQAIVESAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFNEHKATFPARSCVEVARLPKDVKIEIEAIAVRR
>NZ_CP009451.1|WP_038478591.1|3176673_3179064_+|family-20-glycosylhydrolase
MFKSLRFSLLAAGIAVACQAHATPAGDLPLMPWPQQVELPATQGSLPLTNAVSIAISGDKLDGAVDRWRQRISLQTGWQLQPAVTQPAKPTIAIQIKQVVDPLPKADSDESYALSVTAEGVKLTANTRFGAMRGMETVLQLIQNGPQNTSIPYVDIKDVPRFPWRGLLLDSARHFMPVNDILRQLDGMAAAKLNVFHWHLTDDQGWRFASTHYPKLQQLASDGQFYTQAQMKQVVRYATSLGIRVVPEIDLPGHGSALAVAYPELMSAPGPYQMERNWGVLKPLLNPANEAAYKFVDTLIGEVTAIFPDSYLHIGGDEVDDSQWKENAAIQQFMKQHNLADSHALQTYFNQRLEKILEKHKRQMMGWDEIYHPDLPKNILIQSWQGQDSLGAIAANGYKGILSTGFYLDQPQSTAYHYRNEVLPVGLNGVDHISEADSAQSWFFSMPRLKGSAVEGSFTLVKNDGGWRGFIDFKGKSRRAVHDVKWLSPTQVTFTVDTWMGETRPVVTVENDKLSGYFLVGNVRYPATGQKLEGVPDGKQPVVPTEAQMSNILGGEAALWAENIISPLLDIKLWPRTFAVAERLWSAKDVTDVDNMYQRMQAIDAWSTVSVGLRQHTESVTQLTRLAGTPEIMPLQILAQAIEPAQYYTRQHLKFQAGNYNHFEPLNRFADALGAESGQVRAINSWVDKLIADPEDSNSAEALRHIFSRWQSNTPDVLALIDGNYVLKPLKPVAEDVDKLAGLGLRLTDLVAKQGSLNDDELKAIQAQLDAAAQTRDEVVIAAVYPLEKLLRAVVK
>NZ_CP009451.1|WP_038478588.1|3173840_3176558_+|magnesium-translocating-P-type-ATPase
MQFKNLTRQLMSQLSRHLPRRLVQRDPMPDGNVVAKAADIPATLTQACLKYAAASEEQLYIEFGSHPEGLNEREVEKAREAHGLNQIPAQKPSPWFVHLWVCYRNPFNLLLTALGIFSYATEDDLFGASVIALMVVISTLLNFIQETRSTRAADALKAMVSNTATVLRVINEQGEYAYVEVPLDQLVPGDIVKLAAGDMIPADLRVMQARDLFVAQASLTGESLPVEKVAVSRQHDQHNPLECDNLCFMGTNVVSGTALAMIIATGGNTWFGQLAGRVTQQESEPNAFQRGISRVSWLLIRFMLVMVPVVLLINGFTKGDWWEAALFSLSVAVGLTPEMLPMIVTSTLARGAVKLSKQKVIVKHLDAIQNFGAMDILCTDKTGTLTQDRIVLETHTDIFGEQSDRVLHTAWLNSHYQTGLKNLLDVAVLEGVEADHARTAVARWHKIDEIPFDFDRRRMSVVVSEQSDVHQLICKGALQEILNVCTHVRHGDEIVPLSEGMLKRIRSVTDSLNSQGLRVVAVATKFLPARSADYSRVDESDLILEGYIAFLDPPKETTAPALKALKASGIAVKILTGDSELVAAKVCREVGLEVGDLIVGSDIEEMSDDELARVALQTTLFARLTPMHKERIVRLLRGEGHVVGFMGDGINDAPALRAADIGISVDGAVDIAREAADIILLEKSLMVLEEGVIEGRRTFANMLKYIKMTASSNFGNVFSVLVASAFLPFLPMLPIHLLIQNLMYDVSQVAIPFDNVDDEQIKQPQRWNPADLGRFMVFFGPLSSIFDIVTFGVMWWVFKANTPEAQTLFQSGWFVEGLLSQTLIVHMIRTRRIPFLQSRPAWPLMMMTLLVMALGIALPFSPLAEYLHLQALPLSYFPLLVVILAGYVMLTQAVKGFYSRRYGWQ
>NZ_CP009451.1|WP_038478585.1|3172389_3173337_-|HTH-type-transcriptional-regulator-TreR
MQTRLTIKDIARLSGVGKSTVSRVLNNESGVSARTRERVEAVMQQHEFSPSRSARAMRGQSDKVVAIIVTRLDSLSENLAVQTMLPSLYEQGYDPIMMESQFSPDMVEEHLGMLRRRNIDGVILFGFTGIDEKILQPWRSTLVLMARDASGFASVCYDDEGAIQILMSTLYQQGHRDISFLGVPHGDVTTGYRRHQAYLAFCRDHDIVPNAALPGLAMKQGYDHVVEVLTPKTTALLCATDTLALGASKYLQQQNLSEIKLASVGNTPLMKFLHPEIITVDPGYAEAGRAAALQLIGQISQGQQLRQIVVPSHLQ
>NZ_CP009451.1|WP_038478582.1|3170850_3172269_-|PTS-trehalose-transporter-subunit-IIBC
MSKVKQQDIDKLIELVGGRENIATVSHCITRLRFVLNHPENAHPKEIENLPMVKGCFTNAGQFQVVIGTDVDDYYKALIATTGLDSADKEQAKTAARQNMKWHEQLISHFAEIFFPLLPALISGGLILGFRNVIGDLPMSNGETLAQMYPALKTVYDFLWLIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYELGSKIPEVWNFGWFTIEKVGYQAQVIPALLAGLALGFIETRMKRIVPDYLYLVIVPVCSLILAVFLAHTVIGPFGRMIGDGVAFAVRHLMTGSFAPVGAALFGFLYAPLVITGVHQTTLAIDMQMIQSMGGTPVWPLIALSNIAQASAVVGIIICSRKQNEREISVPAAISAYLGVTEPAMYGINLKYHFPMLCAMVGSGLAGLLCGLNGVMANGIGVGGLPGILSIQPKFWGIYAIAIVIAVIVPIVLTSVVYKRKLRQGTLLVV
>NZ_CP009451.1|WP_038478613.1|3184572_3185487_-|carbamate-kinase
MELKPTLVVALGGNALLKRGEPLEADLQRKNIELAAKTIARLTSDWRVVLVHGNGPQVGLLALQNSAYQNVSPYPLDVLGAESQGMIGYMLQQALKNHLPDREVSVLLTQVEVDPQDPAFNNPTKYIGPVYSKEQADELVRDKGWSVKADGQYFRRVVPSPQPKRIVESDAITALIQRDHLVICNGGGGVPVVEKADGYHGIEAVIDKDLSAALLARQIEADALLILTDADAVYLNWGTPAQRPLTSVTPTELEGMSFDAGSMGPKVAACSRFVASCHGIAGIGALEDGPAILAGEKGTLIRGR
>NZ_CP009451.1|WP_038478617.1|3185500_3186721_-|arginine-deiminase
MDKHYVGSEIGQLRSVMLHRPNLSLKRLTPSNCQELLFDDVLSVERAGEEHDVFANTLRGEGVEVLLLTDLLTQTLDVSDAKAWLLNTQVSDYRLGPAFASDVRGWLADMPHRELARRLSGGLTYGEIPTHIKNMVVDTHAATDFIMKPLPNHLFTRDTSCWIYNGVSINPMAKAARQRETNNLRAIYRWHPAFTDGKFIKYYGDENINYDHATLEGGDVLVIGRGAVLIGMSERTTPQGIEFLAESLFKHQQATRVIAVELPKHRSCMHLDTVMTHLDIDTFSVYPEVVRKDVQCWTLTPDGHGGIKRHQETSLVNAIEKALGIDQVKLITTGGDAFEAEREQWNDANNVLTVRPGVVIGYERNIWTNEKYDKAGITVLPIPGDELGRGRGGARCMSCPLDRDGI
>NZ_CP009451.1|WP_038478620.1|3187371_3188376_-|ornithine-carbamoyltransferase
MSHFYQKNFLKLLDFTPAQLNELLVLSARLKSDKKKGNEIQQLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRIYDGIQYRGYGQDIVETLASYAGVPVWNGLTNEYHPTQLLADLLTMQEQLPGKNLNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPKACWPDEKLVAECQAMAEKTGGKITLTEDVAAGVKGADFIYTDVWVSMGEAKEKWAERIALLRPYQVNSTMLALTGNPQVKFMHCLPAFHDDQTTLGKQMALEFDLHGGMEVTDEVFESSHSVVFDQAENRMHTIKAVMVATLAK
>NZ_CP009451.1|WP_038478623.1|3188539_3188968_+|ribonuclease-E-inhibitor-RraB
MANPEQLEEQREETRLIIEELLDDGSDPDALYTIEHHLSADDFETLEKAAVEAFKLGYEVTDPEELEVEEGDTVICCDILSECALNAELIGAQVEQLLNLAEKFGVEYDGWGTYFEDPNGEEGEEGEEGDEYQDEDDDGVRH
>NZ_CP009451.1|WP_038478626.1|3189015_3189777_+|tRNA-isopentenyl-2-thiomethyl-A-37-hydroxylase-MiaE
MDYQQLLSPINQFLLCPTPEAWIQKARRPENLTLLLTDHMICELKAAQTAMLFVRKYVADKEGSQALLAWLQPYEAFAFRDGEEPDFLALHKGLNKSIMPKTKHGWGQQLIDSMVLLIKEELHHFWQVREIMIARNIPYAKITASRYAKGLLSETRTHEPLMLVDKLICGAYIEARSCERFAALAPHLDDELQRFYLSLLRSEARHYQDYLTLAEQIAGGDISERVRFFGHVEAELIQSHDDEFRFHSGVPAD
>NZ_CP009451.1|WP_038478629.1|3189788_3190604_+|hypothetical-protein
MNWTHVIIAGYVGAAIAAVVAIFRKKGWVGKVGAVVIALVAIMAWNILDVKYLIPRDRSGQELAELDDAMARMPVYQVLKEQEPALWMSIRQQAVEMHRQGKTEQEVIDTIQPQILAVETKRLQSATDDNVVAFMQVNMQQTAMVQKSSDDACFRFLFPGVKGGINSPKILPRDVTMRRMQVDAAMMRSAYGPDKHSVTDAEREQARQDIQPIVRQLTKRYGSDLQLMSEPHKAVGKEGLVCNQVQELWRNVLQLPPARAAGIIRLSVALE
>NZ_CP009451.1|WP_038483153.1|3190695_3191286_+|transcriptional-regulator-UhpA
MTAIALIDDHLIVRSGFAQLLGLEADFQVVAEFGSGREALAGLPGHGVQVCICDISMPDISGLELLSQLPKGMAIIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVRTVATGGCYLTPDIAMKLAAGRQDPLTKRERQVAEKLAQGMAVKEIATELGLSPKTVHVHRANLMEKLDVSNDVALARRLFDGW
>NZ_CP009451.1|WP_038478632.1|3191285_3192788_+|signal-transduction-histidine-protein-kinase/phosphatase-UhpB
MRTFLSRLIAVIASFFIFSAGWFCLWSISLHLVERPELAVLLFPFGLRLGLMLQCPRGYWPVLLGAEWLMLAWLAQEVALAHLPLLMLGGVFTVVPVALISRYRHQRDWRTLLRQGAALIAAALLQSLPWLGQGQESLNALLLTLTGGLTLAPTCLVLWHYLTSTVWQPLGPGLVSQPVNWRGRHLIWYLLLFAVSLWLQLGLPAELSRFTPFCLALPIIALAWHYGWQGALIATLMNAIALIASQTWHDHPVDLLLSLLAQSLTGLLLGAGIQRLRELNQSLQTELARNRRLAERLLETEESVRREVARELHDDIGQTITAIRTQAGIVQRQAPENEGVKRSGAHIEQLSLGVYDSVRRLLGRLRPRQLDDLSLEQAVRSLMREMELESRGIVGHIDWQIDEPLLSEGQRVTLFRVCQEGLNNIVKHASASAVTLQGWQQAERLMLVIEDDGSGLPPGSGQQGFGLTGMRERVTALGGTFAISCTHGTRVSVSLPLRYL
>NZ_CP009451.1|WP_038478635.1|3192797_3194126_+|MFS-transporter
MFSFLKVPPSVAPLSDKSEIDARYRYWRRHILITIWLGYALFYFTRKSFNAAAPEILATGVMERTDIGLLATLFYITYGLSKFFSGIVSDFSNARYFMGIGLIATGIVNILFGFSTSLWAFALLWALNAFFQGWGSPVCARLLTAWYSRSERGGWWAVWNTAHNVGGALIPIIMGAAALQYGWRVGMMIAGGLAIIAGLFLCWRLRDRPQTVGLPAVGDWQHDELEIAQQQEGAGLTRKEILYKYVLVNPYIWLLSLCYVLVYVVRAAINDWGNLYMSETLGVGLVTANSAVTMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTTGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGASLSGWPLARVIDIWHWNGFFAVIAIAAGISALLLLPFLNAQAPRAASEA
>NZ_CP009451.1|WP_038478639.1|3194264_3195656_+|hexose-6-phosphate:phosphate-antiporter
MLAFLNQVRKPTLDLPLEVRRKMWFKPFMQSYLVVFIGYLTMYLIRKNFNIAQNDMISTYGLSMTQLGMIGLGFSITYGVGKTLVSYYADGKNTKQFLPFMLILSAICMLGFSASMGAGSVSLFLMIAFYALSGFFQSTGGSCSYSTITKWTPRRKRGSYLGMWNISHNLGGAGAAGVALFGANYLFDGHVIGMFIFPSVIALIVGFIALRYGSDSPESYGLGTAEELFGEEVSEEDKEAEDNSMTKWQIFVEYVLKNKVIWLLCFSNIFLYVVRIGIDQWSTVYAFQELKLSKEVAIQGFTLFEVGALVGTLLWGWLSDLANGRRALVACVALALIIATLGVYQHASNQYVYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGAADGIKGTFAYLIGDSFAKLGLGMIADGTPIFGLTGWAGTFAALDAAAIGCIVLMAIVAIFEERKIRREKKIQQLKIA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	2487-2519	5	0.848
NZ_CP009451_1	1.1\|128528\|27\|NZ_CP009451\|CRISPRCasFinder	128528-128554	27	MF893271	Lysinibacillus phage vB_LspM-01, complete genome	40151-40177	6	0.778
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	422249-422281	6	0.818
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	167188-167220	6	0.818
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	75891-75923	6	0.818
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	9764-9796	7	0.788
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	262923-262955	8	0.758
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_CP026279	Klebsiella oxytoca strain KONIH2 plasmid pKOR-b08d, complete sequence	31009-31041	8	0.758
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_CP050068	Klebsiella aerogenes strain 035 plasmid p35, complete sequence	336754-336786	8	0.758
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_KT935446	Klebsiella pneumoniae strain Kp2964 plasmid 2964TF, complete sequence	111737-111769	8	0.758
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_CP035215	Klebsiella michiganensis strain M82255 plasmid pKOCBH-A, complete sequence	173219-173251	8	0.758
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_CP026274	Klebsiella oxytoca strain KONIH4 plasmid pKPC-4b66, complete sequence	192430-192462	8	0.758
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_CP027617	Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed5, complete sequence	44014-44046	8	0.758
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_CP029112	Escherichia coli strain AR436 plasmid unnamed3, complete sequence	24661-24693	8	0.758
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_CP026205	Escherichia coli strain ECONIH5 plasmid pKPC-e3ee, complete sequence	30639-30671	8	0.758
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_CP019841	Enterobacter roggenkampii strain R11 plasmid pASM2, complete sequence	37788-37820	8	0.758
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_CP026172	Klebsiella pneumoniae strain KPNIH50 plasmid pKPN-bbef, complete sequence	137727-137759	8	0.758
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_CP026184	Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-af73, complete sequence	6340-6372	8	0.758
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_CP010365	Enterobacter hormaechei subsp. oharae strain 34978 plasmid p34978-70.092kb, complete sequence	39753-39785	8	0.758
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_CP026398	Klebsiella pneumoniae strain KPNIH48 plasmid pKPN-edaa, complete sequence	236165-236197	8	0.758
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_CP008843	Klebsiella michiganensis strain M1 plasmid pKOXM1B, complete sequence	143062-143094	8	0.758
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_CP017452	Klebsiella sp. LTGPAF-6F plasmid unnamed2, complete sequence	83072-83104	8	0.758
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_CP042547	Klebsiella michiganensis strain C52 plasmid pC52_002, complete sequence	89365-89397	8	0.758
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_CP032208	Klebsiella pneumoniae strain AR_0109 plasmid unnamed2, complete sequence	234934-234966	8	0.758
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_CP011646	Klebsiella pneumoniae strain CAV1596 plasmid pKPC_CAV1596-97, complete sequence	66847-66879	8	0.758
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_CP026232	Citrobacter freundii complex sp. CFNIH4 plasmid pKPC-c9fd, complete sequence	24056-24088	8	0.758
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_CP027125	Escherichia coli strain AR_0374 plasmid unnamed3	30756-30788	8	0.758
NZ_CP009451_2	2.1\|2914566\|33\|NZ_CP009451\|CRISPRCasFinder	2914566-2914598	33	NZ_CP010382	Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-53.129kb, complete sequence	31870-31902	8	0.758

1. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 5, identity: 0.848

agaggggcggggtgagggcatcaggcaaccccg-	CRISPR spacer
agagggtcggggtgagggcatca-gcacgcacgt	Protospacer
****** **************** ***  * **

2. spacer 1.1|128528|27|NZ_CP009451|CRISPRCasFinder matches to MF893271 (Lysinibacillus phage vB_LspM-01, complete genome) position: , mismatch: 6, identity: 0.778

aaaagctatgggaaacattgtttatca	CRISPR spacer
gcataatatgggaaacattgtttatta	Protospacer
. * . *******************.*

3. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 6, identity: 0.818

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggccggggtgagggcatcaggcattagcc	Protospacer
****** ******************** .  *

4. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 6, identity: 0.818

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggtcggggtgagggcatcagaccgcacct	Protospacer
****** *****************.* .* **

5. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 6, identity: 0.818

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggccggggtgagggcatcaagccgcaccc	Protospacer
****** ****************.** .* **

6. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 7, identity: 0.788

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggccggggtgagggcatcagaccgcacgt	Protospacer
****** *****************.* .* *

7. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 8, identity: 0.758

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggccggggtgagggcatcagcgcgcacgt	Protospacer
****** *****************   .* *

8. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_CP026279 (Klebsiella oxytoca strain KONIH2 plasmid pKOR-b08d, complete sequence) position: , mismatch: 8, identity: 0.758

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggttggggtgagggcatcagcccgcgact	Protospacer
****** .**************** * .*  *

9. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_CP050068 (Klebsiella aerogenes strain 035 plasmid p35, complete sequence) position: , mismatch: 8, identity: 0.758

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggttggggtgagggcatcagcccgcgact	Protospacer
****** .**************** * .*  *

10. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_KT935446 (Klebsiella pneumoniae strain Kp2964 plasmid 2964TF, complete sequence) position: , mismatch: 8, identity: 0.758

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggttggggtgagggcatcagcccgcgact	Protospacer
****** .**************** * .*  *

11. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_CP035215 (Klebsiella michiganensis strain M82255 plasmid pKOCBH-A, complete sequence) position: , mismatch: 8, identity: 0.758

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggttggggtgagggcatcagcccgcgact	Protospacer
****** .**************** * .*  *

12. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_CP026274 (Klebsiella oxytoca strain KONIH4 plasmid pKPC-4b66, complete sequence) position: , mismatch: 8, identity: 0.758

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggttggggtgagggcatcagcccgcgact	Protospacer
****** .**************** * .*  *

13. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_CP027617 (Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.758

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggttggggtgagggcatcagcccgcgact	Protospacer
****** .**************** * .*  *

14. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_CP029112 (Escherichia coli strain AR436 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.758

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggttggggtgagggcatcagcccgcgact	Protospacer
****** .**************** * .*  *

15. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_CP026205 (Escherichia coli strain ECONIH5 plasmid pKPC-e3ee, complete sequence) position: , mismatch: 8, identity: 0.758

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggttggggtgagggcatcagcccgcgact	Protospacer
****** .**************** * .*  *

16. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_CP019841 (Enterobacter roggenkampii strain R11 plasmid pASM2, complete sequence) position: , mismatch: 8, identity: 0.758

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggttggggtgagggcatcagcccgcgact	Protospacer
****** .**************** * .*  *

17. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_CP026172 (Klebsiella pneumoniae strain KPNIH50 plasmid pKPN-bbef, complete sequence) position: , mismatch: 8, identity: 0.758

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggttggggtgagggcatcagcccgcgact	Protospacer
****** .**************** * .*  *

18. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_CP026184 (Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-af73, complete sequence) position: , mismatch: 8, identity: 0.758

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggttggggtgagggcatcagcccgcgact	Protospacer
****** .**************** * .*  *

19. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_CP010365 (Enterobacter hormaechei subsp. oharae strain 34978 plasmid p34978-70.092kb, complete sequence) position: , mismatch: 8, identity: 0.758

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggttggggtgagggcatcagcccgcgact	Protospacer
****** .**************** * .*  *

20. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_CP026398 (Klebsiella pneumoniae strain KPNIH48 plasmid pKPN-edaa, complete sequence) position: , mismatch: 8, identity: 0.758

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggttggggtgagggcatcagcccgcgact	Protospacer
****** .**************** * .*  *

21. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_CP008843 (Klebsiella michiganensis strain M1 plasmid pKOXM1B, complete sequence) position: , mismatch: 8, identity: 0.758

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggttggggtgagggcatcagcccgcgact	Protospacer
****** .**************** * .*  *

22. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_CP017452 (Klebsiella sp. LTGPAF-6F plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.758

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggttggggtgagggcatcagcccgcgact	Protospacer
****** .**************** * .*  *

23. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_CP042547 (Klebsiella michiganensis strain C52 plasmid pC52_002, complete sequence) position: , mismatch: 8, identity: 0.758

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggttggggtgagggcatcagcccgcgact	Protospacer
****** .**************** * .*  *

24. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_CP032208 (Klebsiella pneumoniae strain AR_0109 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.758

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggttggggtgagggcatcagcccgcgact	Protospacer
****** .**************** * .*  *

25. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_CP011646 (Klebsiella pneumoniae strain CAV1596 plasmid pKPC_CAV1596-97, complete sequence) position: , mismatch: 8, identity: 0.758

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggttggggtgagggcatcagcccgcgact	Protospacer
****** .**************** * .*  *

26. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_CP026232 (Citrobacter freundii complex sp. CFNIH4 plasmid pKPC-c9fd, complete sequence) position: , mismatch: 8, identity: 0.758

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggttggggtgagggcatcagcccgcgact	Protospacer
****** .**************** * .*  *

27. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_CP027125 (Escherichia coli strain AR_0374 plasmid unnamed3) position: , mismatch: 8, identity: 0.758

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggttggggtgagggcatcagcccgcgact	Protospacer
****** .**************** * .*  *

28. spacer 2.1|2914566|33|NZ_CP009451|CRISPRCasFinder matches to NZ_CP010382 (Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-53.129kb, complete sequence) position: , mismatch: 8, identity: 0.758

agaggggcggggtgagggcatcaggcaaccccg	CRISPR spacer
agagggttggggtgagggcatcagcccgcgact	Protospacer
****** .**************** * .*  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

358490 : 422898

Enterobacteria_phage(27.78%)

head,plate,capsid,portal,terminase,holin,tail,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038472527.1\|358490_359450_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	8.5e-23	32.5
WP_038472529.1\|360179_361910_+	ABC-F family ATP-binding cassette domain-containing protein	A0A1B0RXA0	Streptococcus_phage	1.2e-38	27.7
WP_038472532.1\|361949_363287_-	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_038472534.1\|363481_365020_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.6e-10	26.6
WP_038472537.1\|365147_366065_+	hypothetical protein	NA	NA	NA	NA
WP_038472540.1\|366124_366805_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_038472543.1\|366880_367240_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_038472546.1\|367232_367976_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_038472549.1\|367972_368362_-	rhodanese	NA	NA	NA	NA
WP_052048938.1\|368427_369432_+	transcriptional regulator FtrA	NA	NA	NA	NA
WP_008459108.1\|369553_369649_+	protein MgtS	NA	NA	NA	NA
WP_038472558.1\|369843_370203_+	hypothetical protein	NA	NA	NA	NA
WP_038472561.1\|370248_370506_-	MafI family immunity protein	NA	NA	NA	NA
WP_038472563.1\|370653_371556_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_038472566.1\|371739_372030_-	hypothetical protein	NA	NA	NA	NA
WP_038472569.1\|372096_372855_+	trans-aconitate 2-methyltransferase	NA	NA	NA	NA
WP_038472572.1\|372851_373781_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_038472575.1\|373782_375201_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_038472577.1\|375302_375758_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA
WP_038472580.1\|375846_376710_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_038472583.1\|376790_377414_+	LysE family translocator	NA	NA	NA	NA
WP_038472586.1\|377470_377659_-	hypothetical protein	NA	NA	NA	NA
WP_038472589.1\|377783_378173_+	thioesterase	NA	NA	NA	NA
WP_038472591.1\|378329_378998_+	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_038472594.1\|379237_381286_-	peptidyl-dipeptidase Dcp	A0A1V0SIU1	Klosneuvirus	4.3e-16	23.0
WP_038472597.1\|381420_382170_+	bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG	NA	NA	NA	NA
WP_038472600.1\|382249_382576_-	YnfA family protein	A0A218MNG8	uncultured_virus	7.1e-22	52.5
WP_038472602.1\|382679_383078_+	DUF1283 domain-containing protein	NA	NA	NA	NA
WP_038472605.1\|383142_383700_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_038472608.1\|383962_386137_+	catalase/peroxidase HPI	NA	NA	NA	NA
WP_038472610.1\|386211_387330_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	8.1e-33	29.6
WP_038472613.1\|387358_387634_-	metal/formaldehyde-sensitive transcriptional repressor	NA	NA	NA	NA
WP_167549836.1\|387891_388092_+	ash family protein	NA	NA	NA	NA
WP_052048939.1\|388138_388777_+	Rha family transcriptional regulator	A0A0P0ZGC2	Escherichia_phage	4.5e-28	63.5
WP_038472616.1\|389312_389831_-	hypothetical protein	A0A0N7BTU4	Escherichia_phage	2.0e-18	37.4
WP_038472619.1\|390430_391699_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	2.4e-206	82.5
WP_038472621.1\|391706_392075_-	DNA polymerase V	A0A222YZE2	Escherichia_phage	2.8e-35	57.4
WP_038472624.1\|392274_393348_-	hypothetical protein	R9TNM7	Vibrio_phage	4.0e-37	33.8
WP_038472627.1\|393351_393567_-\|tail	tail protein	R9TR63	Vibrio_phage	2.2e-11	52.9
WP_038472630.1\|393541_394009_-\|tail	phage tail protein	V9IQX3	Stenotrophomonas_phage	1.6e-14	32.0
WP_052048940.1\|394008_395646_-	hypothetical protein	R9TRP8	Vibrio_phage	2.2e-47	36.0
WP_038472632.1\|395791_396082_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_038472635.1\|396139_396649_-\|tail	tail protein	A0A088FRU2	Escherichia_phage	1.3e-17	34.1
WP_038472639.1\|396645_398118_-\|tail	tail protein	R9TMQ0	Vibrio_phage	2.2e-78	38.9
WP_158399816.1\|398184_398754_-	hypothetical protein	A0A0F7LBP0	Escherichia_phage	8.6e-07	25.0
WP_052048942.1\|398761_400051_-	hypothetical protein	NA	NA	NA	NA
WP_038472642.1\|400050_400599_-\|tail	phage tail protein I	V5YTN0	Pseudomonas_phage	1.1e-30	42.4
WP_038472646.1\|400588_401506_-\|plate	baseplate assembly protein	A0A088FQL4	Escherichia_phage	1.3e-68	49.0
WP_038472649.1\|401480_401840_-\|plate	baseplate assembly protein	A0A193GYY8	Enterobacter_phage	3.3e-20	46.8
WP_038472652.1\|401873_402491_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_038472654.1\|402483_403038_-	hypothetical protein	R9TNK0	Vibrio_phage	7.8e-13	26.2
WP_038472657.1\|403050_403707_-	hypothetical protein	R9TR34	Vibrio_phage	7.6e-23	33.2
WP_038472659.1\|403706_404084_-	hypothetical protein	K7PHD8	Enterobacteria_phage	1.8e-13	40.2
WP_052048943.1\|404087_404486_-	hypothetical protein	NA	NA	NA	NA
WP_038472661.1\|404538_405576_-\|capsid	major capsid protein	K7P6G7	Enterobacteria_phage	4.9e-125	65.8
WP_038472663.1\|405630_405960_-\|head	head decoration protein	E4WL24	Enterobacteria_phage	7.4e-27	54.1
WP_052048944.1\|405977_407366_-	S49 family peptidase	O64320	Escherichia_phage	2.4e-127	66.4
WP_038472669.1\|407307_408918_-\|portal	phage portal protein	E4WL21	Enterobacteria_phage	2.5e-216	72.8
WP_038472671.1\|408914_409121_-\|head,tail	head-tail joining protein	E4WL20	Enterobacteria_phage	6.9e-15	62.1
WP_038472674.1\|409123_411043_-\|terminase	phage terminase large subunit family protein	E4WL19	Enterobacteria_phage	2.7e-286	73.4
WP_038472676.1\|411017_411572_-\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	1.6e-61	64.5
WP_038472679.1\|412114_412687_+	hypothetical protein	NA	NA	NA	NA
WP_038472682.1\|412766_413120_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA
WP_052049059.1\|413085_413415_-	HNH endonuclease	NA	NA	NA	NA
WP_038472687.1\|414965_415424_+	hypothetical protein	NA	NA	NA	NA
WP_038472690.1\|415511_415730_-	hypothetical protein	NA	NA	NA	NA
WP_038472692.1\|415818_416346_-	hypothetical protein	K7PHH7	Enterobacteria_phage	6.3e-44	65.2
WP_038472694.1\|416345_416900_-	lysozyme	K7P7Q3	Enterobacteria_phage	9.5e-51	53.2
WP_071842918.1\|416871_417141_-\|holin	holin	K7P6H9	Enterobacteria_phage	1.7e-34	78.3
WP_071842919.1\|417225_417414_-	hypothetical protein	NA	NA	NA	NA
WP_052048945.1\|417821_418022_+	hypothetical protein	NA	NA	NA	NA
WP_038472704.1\|418178_418787_-	hypothetical protein	H9C175	Pectobacterium_phage	1.9e-52	53.1
WP_038472706.1\|418783_419071_-	DUF968 domain-containing protein	I6XGC2	Burkholderia_virus	7.4e-23	57.4
WP_158399817.1\|419663_419951_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_038472711.1\|420206_420656_-	hypothetical protein	NA	NA	NA	NA
WP_038472715.1\|420862_421159_+	hypothetical protein	NA	NA	NA	NA
WP_038472717.1\|421435_421849_-	hypothetical protein	NA	NA	NA	NA
WP_071842920.1\|421848_422898_-	hypothetical protein	A0A1C9IHW0	Salmonella_phage	1.1e-68	52.8

DBSCAN-SWA_2

447212 : 514664

Bacillus_phage(20.0%)

protease,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038472776.1\|447212_447668_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_038472779.1\|447670_448213_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_038472783.1\|448190_449276_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_038472785.1\|449239_450994_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_038472787.1\|451039_452641_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_038472790.1\|452640_456042_-	type VI secretion protein VasK	NA	NA	NA	NA
WP_038472793.1\|456038_457478_-	hypothetical protein	NA	NA	NA	NA
WP_038472796.1\|457477_457741_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_038472799.1\|457917_459849_-	DUF3274 domain-containing protein	A0A077K801	Ralstonia_phage	4.9e-54	29.9
WP_038472802.1\|459841_460618_-	hypothetical protein	NA	NA	NA	NA
WP_038472804.1\|460622_463118_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	9.6e-18	33.6
WP_038472807.1\|463114_465766_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	2.2e-97	33.5
WP_038472810.1\|466070_466562_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_038472814.1\|466565_468278_-	OmpA family protein	NA	NA	NA	NA
WP_038472818.1\|468274_468964_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_038472820.1\|468960_470301_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_038472822.1\|470318_471866_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_038472824.1\|471898_472396_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_038472827.1\|472973_474623_-	GGDEF and EAL domain-containing protein	NA	NA	NA	NA
WP_038472829.1\|474713_474980_-	HTH domain-containing protein	NA	NA	NA	NA
WP_038472835.1\|475378_475924_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_038472838.1\|476106_478404_+	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA
WP_162473295.1\|478477_479134_+	O-methyltransferase	W8CYT3	Bacillus_phage	3.3e-34	53.0
WP_038472844.1\|479167_483067_-	ATP-dependent RNA helicase HrpA	A0A1V0SIV3	Klosneuvirus	3.1e-55	30.1
WP_008459208.1\|483280_483886_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_038472527.1\|484147_485107_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	8.5e-23	32.5
WP_038472847.1\|485214_485811_-	phenylacetic acid degradation protein PaaY	NA	NA	NA	NA
WP_038472850.1\|485825_486752_-	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA
WP_038472852.1\|486878_488066_-	cellulase family glycosylhydrolase	NA	NA	NA	NA
WP_038472855.1\|488155_488971_-	DUF2861 family protein	NA	NA	NA	NA
WP_038472858.1\|488967_489630_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.4e-23	32.7
WP_052048949.1\|489616_491035_-	DUF3404 domain-containing protein	NA	NA	NA	NA
WP_038472860.1\|491087_492041_-	sugar kinase	NA	NA	NA	NA
WP_038472863.1\|492051_492882_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_158399818.1\|492854_493109_-	hypothetical protein	NA	NA	NA	NA
WP_038472865.1\|493199_494054_+	tagatose bisphosphate family class II aldolase	NA	NA	NA	NA
WP_038472869.1\|494077_494992_+	1-phosphofructokinase	NA	NA	NA	NA
WP_038472871.1\|495002_496430_+	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_038472874.1\|496416_497205_+	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_038472875.1\|497257_497992_-	YnfC family lipoprotein	NA	NA	NA	NA
WP_038472878.1\|498207_498480_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_038472880.1\|498694_501136_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	7.5e-217	49.4
WP_038472882.1\|501149_501776_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	3.2e-31	39.2
WP_038472886.1\|502088_502805_+	osmoprotectant ABC transporter permease OsmY	NA	NA	NA	NA
WP_038472888.1\|502823_503729_+	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_038472891.1\|503738_504377_+	osmoprotectant ABC transporter permease OsmW	NA	NA	NA	NA
WP_038472895.1\|504413_505559_+	osmoprotectant ABC transporter ATP-binding protein OsmV	G9BWD6	Planktothrix_phage	3.2e-24	32.3
WP_038472898.1\|505656_506949_+	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA
WP_038472900.1\|506901_507597_-	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_038472904.1\|507719_508937_-	ROK family transcriptional regulator	NA	NA	NA	NA
WP_038472907.1\|509062_509965_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_038472909.1\|510064_511315_+	MFS transporter	NA	NA	NA	NA
WP_038472912.1\|511389_512874_+	carboxypeptidase M32	NA	NA	NA	NA
WP_038472915.1\|513026_513563_+	acid resistance repetitive basic protein Asr	NA	NA	NA	NA
WP_038472918.1\|513857_514664_+\|protease	serine protease	NA	NA	NA	NA

DBSCAN-SWA_3

1144972 : 1154358

Bacillus_phage(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038474090.1\|1144972_1146694_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	2.4e-15	24.5
WP_038474094.1\|1146747_1147443_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_002211347.1\|1147727_1147946_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_038474097.1\|1148044_1150318_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.1e-165	42.1
WP_008461103.1\|1150345_1150666_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.4e-14	47.2
WP_038474100.1\|1150989_1151211_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	6.1e-17	61.2
WP_038474103.1\|1151299_1153246_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	6.5e-38	41.0
WP_038474106.1\|1153242_1154358_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	39.8

DBSCAN-SWA_4

1622720 : 1632775

Bacillus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038475140.1\|1622720_1624028_-	phosphate regulon sensor histidine kinase PhoR	W8CYF6	Bacillus_phage	2.0e-27	31.1
WP_008454506.1\|1624050_1624740_-	phosphate response regulator transcription factor PhoB	W8CYM9	Bacillus_phage	7.4e-37	38.0
WP_038475142.1\|1624939_1626157_+	exonuclease subunit SbcD	R4JGS2	Bacillus_phage	4.9e-07	33.3
WP_038475144.1\|1626153_1629309_+	exonuclease subunit SbcC	G3MAB6	Bacillus_virus	3.7e-14	29.4
WP_038472527.1\|1629622_1630582_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	8.5e-23	32.5
WP_038475146.1\|1630826_1631738_-	fructokinase	NA	NA	NA	NA
WP_038475148.1\|1631863_1632775_+	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	5.1e-102	63.0

DBSCAN-SWA_5

3690050 : 3709127

uncultured_Caudovirales_phage(30.43%)

tail,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008459505.1\|3690050_3690731_+	ribonuclease III	A0A0P0YM82	Yellowstone_lake_phycodnavirus	4.3e-21	29.7
WP_038479801.1\|3690727_3691636_+	GTPase Era	NA	NA	NA	NA
WP_038479804.1\|3691640_3692378_+	DNA repair protein RecO	NA	NA	NA	NA
WP_038479807.1\|3692452_3693184_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_038479810.1\|3693183_3693564_+	holo-ACP synthase	NA	NA	NA	NA
WP_038479813.1\|3693560_3693821_-	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.2e-16	50.0
WP_038479816.1\|3694083_3694830_+	helix-turn-helix transcriptional regulator	A0A2I6PIE7	Escherichia_phage	1.2e-45	44.7
WP_038479819.1\|3695192_3695528_+	antitermination protein	Q716D8	Shigella_phage	1.7e-18	51.8
WP_038479822.1\|3695585_3695885_+	hypothetical protein	O64361	Escherichia_phage	3.0e-19	50.0
WP_038479825.1\|3695884_3696376_+	lysozyme	A0A2H4JCH1	uncultured_Caudovirales_phage	2.5e-39	52.2
WP_038479828.1\|3696372_3696825_+\|lysis	lysis protein	M1FJ79	Enterobacteria_phage	1.5e-22	43.9
WP_038479831.1\|3696875_3697754_+	triacylglycerol lipase	NA	NA	NA	NA
WP_038479834.1\|3697799_3698339_+	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.5e-37	43.0
WP_038479837.1\|3698342_3699482_+	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	8.0e-129	61.8
WP_038479840.1\|3699492_3699933_+	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	2.6e-43	62.3
WP_038479843.1\|3699936_3700350_+	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	2.4e-38	58.2
WP_038483254.1\|3700361_3700538_+	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	1.0e-06	46.0
WP_052049015.1\|3700527_3702279_+	hypothetical protein	A0A0M4REK7	Salmonella_phage	2.1e-64	35.4
WP_038479846.1\|3702278_3702857_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	6.0e-32	44.0
WP_038479849.1\|3702866_3703175_+	hypothetical protein	A0A0M4R5B7	Salmonella_phage	1.6e-23	54.0
WP_038479852.1\|3703184_3704192_+	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	5.2e-71	40.0
WP_038479855.1\|3704230_3704914_+	translation initiation factor IF-2	A0A0M5M1K7	Salmonella_phage	9.5e-61	55.0
WP_038479858.1\|3704910_3705261_+	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.2e-29	56.4
WP_038479861.1\|3705261_3706461_+	bacteriophage protein	A0A0M4RD32	Salmonella_phage	2.0e-154	70.2
WP_038479863.1\|3706457_3707138_+	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	1.4e-99	75.7
WP_038479867.1\|3707137_3707968_+\|tail	tail fiber protein	K7P7Q7	Enterobacteria_phage	3.1e-37	46.0
WP_038479870.1\|3707967_3708567_+\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	1.1e-49	49.2
WP_038483260.1\|3708547_3708733_-	hypothetical protein	NA	NA	NA	NA
WP_071842982.1\|3708746_3709127_-	hypothetical protein	I3PGW0	Xanthomonas_phage	1.7e-06	31.6

DBSCAN-SWA_6

4349081 : 4360943

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038481283.1\|4349081_4350506_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.1e-18	33.7
WP_038481286.1\|4350761_4351757_+	NAD-dependent epimerase/dehydratase family protein	Q6VZT4	Canarypox_virus	5.5e-09	26.4
WP_038481289.1\|4351979_4352879_+	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	1.3e-49	41.4
WP_144244070.1\|4352978_4353194_-	hypothetical protein	NA	NA	NA	NA
WP_038481291.1\|4353283_4354369_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.4e-100	53.1
WP_038481294.1\|4354365_4355262_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.6e-31	34.6
WP_038483367.1\|4355319_4356198_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.3e-105	64.5
WP_038481297.1\|4356201_4356750_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.5e-53	57.7
WP_038481300.1\|4356755_4357730_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_038481303.1\|4357745_4358519_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_038481306.1\|4358523_4359603_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	2.8e-14	25.5
WP_038481309.1\|4359629_4360943_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	2.0e-51	34.8

DBSCAN-SWA_7

4598120 : 4638990

Salmonella_phage(34.15%)

integrase,plate,terminase,holin,tail

attL 4596267:4596283|attR 4632561:4632577

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4596267:4596283	attL	NA	NA	NA	NA
WP_038481877.1\|4598120_4599194_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	2.5e-92	50.6
WP_052049036.1\|4599168_4599459_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	2.4e-13	39.6
WP_038481880.1\|4599520_4599724_-	DUF1187 family protein	NA	NA	NA	NA
WP_052049037.1\|4599711_4600056_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_052049038.1\|4600059_4602246_-	hypothetical protein	S4TNL0	Salmonella_phage	5.1e-55	37.2
WP_038481886.1\|4602451_4602760_-	hypothetical protein	NA	NA	NA	NA
WP_052049039.1\|4603333_4603708_-	hypothetical protein	NA	NA	NA	NA
WP_052049040.1\|4603804_4604059_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_052049041.1\|4604062_4604488_+	hypothetical protein	NA	NA	NA	NA
WP_038481889.1\|4604504_4604756_+	hypothetical protein	NA	NA	NA	NA
WP_038481892.1\|4604769_4605009_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_052049042.1\|4605028_4606027_+	hypothetical protein	H9C164	Pectobacterium_phage	4.5e-35	61.2
WP_038481895.1\|4606039_4606435_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_038481897.1\|4606427_4606670_+	hypothetical protein	NA	NA	NA	NA
WP_038481899.1\|4606666_4606870_+	hypothetical protein	NA	NA	NA	NA
WP_038481902.1\|4606873_4607065_+	hypothetical protein	NA	NA	NA	NA
WP_038481905.1\|4607057_4607549_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	6.2e-70	79.4
WP_038481908.1\|4607541_4608099_+	hypothetical protein	NA	NA	NA	NA
WP_038481911.1\|4608099_4608468_+	HNH endonuclease	A0A2R2Z2X9	Escherichia_phage	9.4e-55	81.0
WP_038481914.1\|4608464_4608764_+	hypothetical protein	NA	NA	NA	NA
WP_052049043.1\|4608760_4609222_+	hypothetical protein	H6WZG0	Escherichia_phage	4.8e-16	53.3
WP_038481917.1\|4609321_4609591_+	hypothetical protein	A0A1V0E5L9	Salmonella_phage	1.9e-17	50.6
WP_038481920.1\|4609719_4609914_+	hypothetical protein	NA	NA	NA	NA
WP_038481923.1\|4610070_4610361_+	DUF968 domain-containing protein	I6XGC2	Burkholderia_virus	8.8e-24	58.2
WP_038481926.1\|4610357_4610966_+	hypothetical protein	H9C175	Pectobacterium_phage	1.4e-55	56.0
WP_052049044.1\|4611057_4611681_+	hypothetical protein	B5WZS6	Pseudomonas_phage	5.0e-40	46.7
WP_081948210.1\|4611685_4612579_+	hypothetical protein	B5WZS7	Pseudomonas_phage	4.3e-69	47.0
WP_038481929.1\|4612529_4613144_+	methyltransferase domain-containing protein	B5WZS8	Pseudomonas_phage	1.1e-44	46.2
WP_038481932.1\|4613187_4613436_+\|holin	class II holin family protein	A0A127KNH9	Pseudomonas_phage	7.5e-08	40.3
WP_038481935.1\|4613438_4613969_+	lysozyme	Q7Y3V3	Yersinia_phage	2.2e-81	80.6
WP_038481938.1\|4613965_4614493_+	hypothetical protein	K7PHH7	Enterobacteria_phage	3.9e-46	57.7
WP_038481941.1\|4614600_4614819_+	hypothetical protein	NA	NA	NA	NA
WP_038481945.1\|4614911_4615910_+\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	1.3e-29	38.0
WP_038481948.1\|4616108_4617725_+	hypothetical protein	A0A0M5M1R6	Salmonella_phage	2.4e-272	82.3
WP_038481951.1\|4617726_4619202_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	5.7e-151	55.8
WP_038483465.1\|4619272_4619806_+	phage Mu F like family protein	A0A0M4REK0	Salmonella_phage	6.8e-46	55.2
WP_038481957.1\|4620264_4621536_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	5.3e-81	43.7
WP_038481960.1\|4621547_4622051_+	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	1.2e-28	44.6
WP_038481963.1\|4622061_4623009_+	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	2.0e-93	52.6
WP_038481966.1\|4623051_4623435_+	hypothetical protein	NA	NA	NA	NA
WP_038481970.1\|4623418_4623829_+	DUF4054 domain-containing protein	A0A2H4J1A6	uncultured_Caudovirales_phage	2.1e-31	54.8
WP_038481972.1\|4623825_4624329_+	hypothetical protein	NA	NA	NA	NA
WP_038481975.1\|4624328_4624721_+	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	4.2e-37	65.3
WP_038481978.1\|4624717_4625263_+	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	9.6e-48	50.8
WP_038481981.1\|4625266_4626424_+	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	1.1e-152	72.9
WP_038481984.1\|4626434_4626875_+	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	7.5e-59	76.7
WP_038481986.1\|4626878_4627304_+	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	1.3e-39	58.2
WP_158399828.1\|4627315_4627504_-	hypothetical protein	NA	NA	NA	NA
WP_038481989.1\|4627481_4629491_+	lytic transglycosylase domain-containing protein	A0A0M4REK7	Salmonella_phage	1.7e-211	58.2
WP_038481992.1\|4629490_4630090_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	2.4e-68	69.7
WP_038481995.1\|4630091_4630397_+	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	1.0e-22	52.5
WP_038481998.1\|4630400_4631462_+	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	5.2e-138	66.1
WP_052049045.1\|4631463_4631808_+	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.4e-23	50.9
WP_038482001.1\|4631863_4632604_+\|plate	phage baseplate assembly protein V	A0A0M5M1K7	Salmonella_phage	6.4e-87	68.9
4632561:4632577	attR	NA	NA	NA	NA
WP_038482004.1\|4632603_4632957_+	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	4.6e-43	74.4
WP_038482007.1\|4632957_4634157_+	bacteriophage protein	A0A0M4RD32	Salmonella_phage	1.6e-164	76.2
WP_038482010.1\|4634153_4634834_+	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	1.7e-102	77.9
WP_038482013.1\|4635638_4636055_+\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	5.3e-14	59.1
WP_038483474.1\|4636026_4636467_-\|tail	tail assembly chaperone	A0A0F7LDZ0	Escherichia_phage	4.7e-45	58.9
WP_038482016.1\|4637493_4638990_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	8.7e-99	46.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009451

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection