CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009447	Mycobacterium abscessus subsp. bolletii strain MM1513, complete genome	5 crisprs	csa3,cas3,WYL,cas4,DEDDh,DinG	0	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009447_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009447_1

266359-266453

Orphan

Consensus_repeat	Method
TTGTTCGGGTTCAGCGGGCTGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009447_1

>merge|NZ_CP009447|1|266359-266453|CRISPRCasFinder
TTCATCGGGTTCAGCGGGCTGGCCGGGTTCGCGGGATTGTTCGGGTTCAGCGGGCTGGCGGGATTGGCCGGGTTGTTCGGGTTCAGCGGGCTGGC

>NZ_CP009447|1|1|266359-266453|CRISPRCasFinder
TTCATCGGGTTCAGCGGGCTGGC	CGGGTTCGCGGGATTGTTCGGGTTCAGCGGGCTGGCGGGATTGGCCGGG
TTGTTCGGGTTCAGCGGGCTGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009447.1\|WP_005105816.1\|258862_260116_-\|NADH-oxidase	unknown	unknown	gnl\|CDD\|240084
NZ_CP009447.1\|WP_005102611.1\|260825_261899_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226326
NZ_CP009447.1\|WP_005102718.1\|266822_268412_+\|acyl-CoA-synthetase	unknown	unknown	gnl\|CDD\|235731
NZ_CP009447.1\|WP_005100465.1\|275736_276651_-\|methylisocitrate-lyase	unknown	unknown	gnl\|CDD\|131370
NZ_CP009447.1\|WP_005063839.1\|260238_260829_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP009447.1\|WP_005103161.1\|265234_266332_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274934
NZ_CP009447.1\|WP_074292112.1\|258449_258932_-\|nitroreductase-family-deazaflavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|281995
NZ_CP009447.1\|WP_005101675.1\|268456_269059_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP009447.1\|WP_005105792.1\|262794_263655_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP009447.1\|WP_005105786.1\|257319_258384_-\|galactose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|238341
NZ_CP009447.1\|WP_005102342.1\|269048_269468_-\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
NZ_CP009447.1\|WP_005101425.1\|274615_275737_-\|2-methylcitrate-synthase	unknown	unknown	gnl\|CDD\|237590
NZ_CP009447.1\|WP_005101306.1\|278270_279692_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226322
NZ_CP009447.1\|WP_005102899.1\|269902_272173_+\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|235367
NZ_CP009447.1\|WP_005071735.1\|261911_262703_-\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|181131
NZ_CP009447.1\|WP_005101995.1\|273227_273758_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP009447.1\|WP_005071732.1\|264517_265183_-\|glyoxalase	unknown	unknown	gnl\|CDD\|372667
NZ_CP009447.1\|WP_005101757.1\|263659_264508_-\|tellurium-resistance-protein	unknown	unknown	gnl\|CDD\|376704
NZ_CP009447.1\|WP_005102150.1\|276647_278153_-\|2-methylcitrate-dehydratase	unknown	unknown	gnl\|CDD\|224990
NZ_CP009447.1\|WP_079378850.1\|272279_273167_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009447.1\|WP_005105816.1\|258862_260116_-\|NADH-oxidase	gnl\|CDD\|240084	cd04733, OYE_like_2_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	8.91091e-165
NZ_CP009447.1\|WP_005102611.1\|260825_261899_-\|hypothetical-protein	gnl\|CDD\|226326	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown].	8.98371e-115
NZ_CP009447.1\|WP_005102718.1\|266822_268412_+\|acyl-CoA-synthetase	gnl\|CDD\|235731	PRK06188, PRK06188, acyl-CoA synthetase; Validated.	0
NZ_CP009447.1\|WP_005100465.1\|275736_276651_-\|methylisocitrate-lyase	gnl\|CDD\|131370	TIGR02317, Methylisocitrate_lyase, methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.	1.54454e-147
NZ_CP009447.1\|WP_005063839.1\|260238_260829_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.72256e-07
NZ_CP009447.1\|WP_005103161.1\|265234_266332_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274934	TIGR04036, family_protein, putative luciferase-like monooxygenase, FMN-dependent, CE1758 family. This tightly conserved subfamily of the bacterial luciferase-like monooxygenase (LLM) family, with members showing > 60 % pairwise sequence identity, includes proteins from both species with and species without the ability to make coenzyme F420. Therefore, the like cofactor is FMN rather than F420. The presence of three members in Kineococcus radiotolerans SRS30216 and two in Saccharopolyspora erythraea NRRL 2338 suggest closely related (subfamily) rather than exactly conserved (equivalog) function. Gene neighborhoods around members are not conserved. [Unknown function, Enzymes of unknown specificity].	2.09098e-76
NZ_CP009447.1\|WP_074292112.1\|258449_258932_-\|nitroreductase-family-deazaflavin-dependent-oxidoreductase	gnl\|CDD\|281995	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase. This family of proteins is found in the genera Mycobacterium and Streptomyces. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase. Rv1558 is an F420H(2)-dependent quinone reductase involved in oxidative stress protection.	4.00501e-11
NZ_CP009447.1\|WP_005101675.1\|268456_269059_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.74696e-09
NZ_CP009447.1\|WP_005105792.1\|262794_263655_+\|transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	7.50307e-10
NZ_CP009447.1\|WP_005105786.1\|257319_258384_-\|galactose-1-phosphate-uridylyltransferase	gnl\|CDD\|238341	cd00608, GalT, Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.	4.86474e-114
NZ_CP009447.1\|WP_005102342.1\|269048_269468_-\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	8.52654e-23
NZ_CP009447.1\|WP_005101425.1\|274615_275737_-\|2-methylcitrate-synthase	gnl\|CDD\|237590	PRK14033, PRK14033, bifunctional 2-methylcitrate synthase/citrate synthase.	0
NZ_CP009447.1\|WP_005101306.1\|278270_279692_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|226322	COG3800, COG3800, Predicted transcriptional regulator [General function prediction only].	1.82095e-158
NZ_CP009447.1\|WP_005102899.1\|269902_272173_+\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	gnl\|CDD\|235367	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional.	0
NZ_CP009447.1\|WP_005071735.1\|261911_262703_-\|short-chain-dehydrogenase	gnl\|CDD\|181131	PRK07814, PRK07814, SDR family oxidoreductase.	1.62564e-153
NZ_CP009447.1\|WP_005101995.1\|273227_273758_+\|N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.7964e-26
NZ_CP009447.1\|WP_005071732.1\|264517_265183_-\|glyoxalase	gnl\|CDD\|372667	pfam13669, Glyoxalase_4, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.	1.98773e-08
NZ_CP009447.1\|WP_005101757.1\|263659_264508_-\|tellurium-resistance-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	2.65198e-41
NZ_CP009447.1\|WP_005102150.1\|276647_278153_-\|2-methylcitrate-dehydratase	gnl\|CDD\|224990	COG2079, PrpD, Uncharacterized protein involved in propionate catabolism [General function prediction only].	1.97733e-149

>NZ_CP009447.1|WP_005103161.1|265234_266332_+|LLM-class-flavin-dependent-oxidoreductase
MRFQLLDIVFHLPNPATRALAPAAERLNRVIETAVLAENLGFDSFAVGERHAGDVLSSAPTVLLGAVAAATDRILLSTGVTVLSLLDPVRAAEDFATIDQLSRGRLEIVIGKGNEDRQYPLMGLDIAKQYEYLQENYELLRRLLREEHVDWVGAHRHPLADATTLPRPYDGPFRIWHGSATSTFAVELAAKWGDPIVTANALQPKENYRVLIDRYRELYAHHGHDPAQLYVGAGSGGLYLADTTEQAIAQYRPIYEARLAQMAKLKAHPQAVGKFPSFESIEDAADRGPVLAGSPERVAEKILDWHEAFGHEFQSISLSPEADFEEQKDTLRRFAEEVVPLVRAEVKSTLWGPLDTRRAKGFTAV
>NZ_CP009447.1|WP_005071732.1|264517_265183_-|glyoxalase
MITELDSVLLDVPNLGEAKAAYSRLFNSSAPHPQLHLGLPEWASHPGMLFRVDHLDCAARTVARRGLALTVHGDLATGASNGVTLGLSGQPPAAPQPDADSCRIDHLVLFSPNRDRIIATLCGRLGFDLRLDRLQSWGAHQLFFRGAGLVVEVVLRDDDPSGPDSLWGIAWRTADIEASHARLSGAGATLGDIRNGHKPGTRVVTVKDPALAVPTILIEQR
>NZ_CP009447.1|WP_005101757.1|263659_264508_-|tellurium-resistance-protein
MTTPNSGSWQPDPDGRYEFRWHDGQRWTDQVAHQGSVSTAPLGGAATQPAAPDQPAGNQFSGISGDLVDGRFSENEAKPISNQNAKLLRVRLGEPFLARQGSMVAYQGNVDFAFEGGGAAKFLKKALTGEGLPLMRCSGQGDVFLAERAFDVHLLNLNNAGLSISGKNVLAFSAGLNWNIERVRGASVVTGGLFNTTLRGTGWVALTTDGPPVVLNAAEAPTFADTNAVVAWSSNLQTQLKTSFKAGALIGRGSGEALQVSFQGQGFVIVQPSEGIPVVTAG
>NZ_CP009447.1|WP_005105792.1|262794_263655_+|transcriptional-regulator
MPASSPPTARVVRIVEMLAAAMQPKTVSEIAASTGISRATATAVVNELEAAGWVARDDELRYRIGASLPRAVDTSMPREAQQLLARIAAEAQAGVTVSCISAKALTVVAKAQAGRRAVTGFAVGQSIPLAFPAGSAVMPWRAAEEREQWLGTAAGLSARSGQRLLQQVSDCGYVVYRPDHDDTGMVDLLSDLLGSVGSEVMEAALRERLLRQLSRLTSRPYSPDELTSDEVLPISYLAAPIFDGAEARYELQLGPLLSRATRVVREALIATLMRGARELSGVLGDR
>NZ_CP009447.1|WP_005071735.1|261911_262703_-|short-chain-dehydrogenase
MILDRFKLDGNVAVVTGAGRGLGAAIAEAFAQAGADVLIASRTESQLREVAEKVQAAGRQAEVVVADLSDTEASAALAQKAVDRFGRLDVVVNNVGGTMPKPFLDTTNDDLAEAFSFNVLSGHALLRAAVPHLLKSDNASVINITSTMGRLPGRAFLGYCTAKGALAHYTRTAAMDLSPRIRVNGIAPGSILTSALEVVAGNDEMRNTLEQNTPLHRLGDPDDIAAAAVYLASPAGSFLTGKVLEIDGGLIAPNLDIPLPDLA
>NZ_CP009447.1|WP_005102611.1|260825_261899_-|hypothetical-protein
MTKTRVAVWGTGNVGQHALAGVITDPSMELVGVWVSGSNKAGKDAGALAGLDILTGITATTDAAQILALRPDCVVYTAMTDNRLMEALKDLTDLLSAGINVAASAPVFLQYPWGVLPENMLTPIENAAREGNSSIFVGGIDPGFANDLLPLALMGTCQRIDQVRCIEIVDYATYDSETVMFDVMGFGKPMEETPMLLQPGVLSLAWGSVVRQLAAGLGVELDEVTEAYEKLPAPEDFDISSGHIPAGTMAALHFEVRGIKDGRAVTVLEHFTRLREDLAPNWPQPAHEGGTYRVQITGEPSYLLDLGSFSARGDHNYANLIATAMRVVNAVPAVVAAEAGIRTTLDLPLITGKGRAV
>NZ_CP009447.1|WP_005063839.1|260238_260829_+|TetR/AcrR-family-transcriptional-regulator
MSARDTLIASVTGLVRRRGVAGTGLNALLEDSGVSRRTIYLNFPGGKQELVAEATRLAGNELTAIIKAAGDDVDPARGIQLFIELWKAQLAETEMQAGCPVVAAVLGRTEAPEAAAVAADAFESWRKILIDRLARYDVDGETARSLASTMIAAIEGAVIMSIAAQSTEALDDVGQRLVELVRLYVPAGAKPNPHVD
>NZ_CP009447.1|WP_005105816.1|258862_260116_-|NADH-oxidase
MPDIHDPLPLANGQVLRNRLMKSALSEALGNAEQGPDHRLVQLFSRWGAGGYGLIVTGNVMVDHNHLGEPGNVVIEDDRHLEGLSRWAKATKDGGGLIWMQVNHPGRQANPLVTKHQPVAPSAVRMSVPGWQAPRELTDVEIEDIIDRYARTAVVADTAGFDGVQIHGAHGYLVAQFLSPNTNRRTDRWGGDAQRRMRFVLEIVRRTKAAVSPGFAVAIKLNSADFQRGGFTEEESRGVIAALAAEGIDLIEISGGTYESPAMEGRPVVVSTSTQAREAYFLEYATTARAVAGDVPLAVTGGFRTTAAMNEAIESGACDVIGLGRPTTVNPEAAIELLSTRRDRLTVPDAALPLPARLAATARAKAFLSAHELQWHGTQMHRLGAGSDPDPSIGPWITALRLLKNNGVEAFRKRRSS
>NZ_CP009447.1|WP_074292112.1|258449_258932_-|nitroreductase-family-deazaflavin-dependent-oxidoreductase
MDHGLAAPQEQRRRSIPKKEKFMTDKTLRKFRRERAMGRYLLNPAVGALAKLGVRTALASELETTGRRTGQLRRVPVSVQFDSTGAWVICQHGTRSGWGSNIAANPNVRIRQGNRWRTGTAQFRPDDDVVARGRGFGVIGARVVKALETTPISVRIDFTD
>NZ_CP009447.1|WP_005105786.1|257319_258384_-|galactose-1-phosphate-uridylyltransferase
MWRTRRELADGREILYFDSTPTERAAVDRRDLPPVSTQSQIRFDPLLGDWVTLASHRQTRTFLPPTDLCPLCPSTPERPTEIPEHAYEVVAFENRFPSLSLHAQAATPPAGAGFGRCEVLCFTSEHDTSFAQLEPRHARLIVDVWAERTKELSAIDGVKQVYCFENHGEEIGVTLAHPHGQIYAYPFITAKTARVLSNVDTHRKQHGTNLFGEILAAERATGTRVVTANDEWTAFVPSFARWPYEVSLYPHRQVADIPDLDDAARSAFAELYLDVLQRFACRFDNPMPYIAGWNQAPTVASGAIRDNWWLHLQVFSIRRAPGKLKYLAGSESGMGAFISDTTPEQVAAELRDVM
>NZ_CP009447.1|WP_005102718.1|266822_268412_+|acyl-CoA-synthetase
MPDPFDPLHGSINSGHLLVSALKRNRDAPALVLGDVTLTGAQMADEISKYIQAFIELVPDPTDGQGMLALNRPEVLLVIGAGQLLGTRRTALHPLGSLDDHAYVLADAKITTLVIDPTPQFVERAAALVAKVPTLTRVLTLGPVPAELAEVGQDLVAAAAGFAARPLTPINLSPDHINGLTYTGGTTGKPKGVIGTSQSILTMTQIQLAEWEWPERPKFLMCTPLSHAGAAFFMPTLMKGGSMVVLPKFDAGAVLAAIEEHQITATMLVPSMIYALLDHPDSRTRDLSSLQTVYYGASAINPVRLAEAIERFGPIFAQYFGQSEAPMVISYLAKGDHDAKRLSSCGRPSAFLRTALLDENDRPVKQGEPGEICVAGPLVAGGYWGLPEQTAETFKNGWLRTGDVAREDEDGFWFIVDRTKDMIVTGGFNVFPREVEDVVAEHPSVAQVGVIGVPDEKWGEAVTAIVVLRSDASSDEAAVALMTSEIQSAVKERKGSVQSPKHVIVADSLPLTALGKLDKKALRQKYATV
>NZ_CP009447.1|WP_005101675.1|268456_269059_-|TetR/AcrR-family-transcriptional-regulator
MGRKPQYSADDILDAALGLVAAGGPSAATATAIGRALGAPSGSIYHRFSSRDELMARLWLRSIARYQDGILSALGWPDPDDALGAAISHAFDWTSENRNEALLLLQYEKADLVAHWPDTLATDLKSLNSRVRKALREYTERRYGAVTPELTDKVMFALIDMPYAAVRRHLPDKGEPASWLREFIHTSAQSLLARACPNEP
>NZ_CP009447.1|WP_005102342.1|269048_269468_-|PaaI-family-thioesterase
MITLDQAQQVLNAQPFSRLLGASITRVDKTGIQLSLDIRDELRQQSGFIHGGVLSYLADNAITYACGLGLGADIVTSGYTIEYVSPARDGVRLLADASLVSAGRTKALGRCEISIQDHDGSTKLVAVAQGTSMLRRRGA
>NZ_CP009447.1|WP_005102899.1|269902_272173_+|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase
MTTQPLKATTLGSARIGPRRELKRATESYWAGRTSREELETVAAGLRRDNWTALAAAGLDSVPVNTFSYYDQVLDTAVLLGALPPRVSGIADDLDRYFVAARGNADVTPLEMTKWFDTNYHYLVPEIGPDTTFELNPAKLFGELKEAQALDIPARPVVVGPITFLALSKSVDGAGAPIERLDEVVALYEQLLVQLAEAGVGWVQIDEPVLVTDILPNGPELAERVYGRLGTVADRPAILVASYFGELGAALPALARTPIEAIAVDLVYGSASAVASVPELAGKTLVAGVVDGRNIWRTNLQSALSTLASLLGSAESVAVSTSCSTLHVPYSLEPETELDDQLRSWLAFADEKVKEVVVLARALSEGREAVADEIAASNAAVESRKTDPRLNNGQIRTRLDSILAAGVSRGDAAERRRSQDERLNLPELPTTTIGSFPQTVEIRKARQALAKGEIDDAEYVRQMRAEVADVIALQEKLGLDVLVHGEPERNDMVQYFAEQLDGFFATQNGWVQSYGSRCVRPPILYGDVARQQPMTVEWATYAQSLTQKHVKGMLTGPVTILAWSFVRDDQPLGDTANQIALAIRDETVDLQNAGIAIIQVDEPALRELLPLRDSEKQAYLDWAVGAFRLSTSGVSDATQIHTHLCYSEFGEVIGAIADLDADVTSIEAARSHMEVLDDLNAIGFSNSVGPGVYDIHSPRVPSTEEMATSLREALKAVPAQRLWVNPDCGLKTRKVDEVTSSLSNLVAAAAAVRAGA
>NZ_CP009447.1|WP_079378850.1|272279_273167_+|hypothetical-protein
MNTVALELVPPNVEGGHEKAAEELHKLRQFSAEFGIDERIDHVMIPSMIAEDSDRPLEMKPKLDVVDYWSIIRAELPAMRGLCTQVTSFSDETSLRGRLTDLTGAGMDGVIFVGVPRTMADGDGAGIPPTDALSKFDDIVTNRGVILIPTRAEEQGRFSFKCDKGATFAMTQLLYSDAVVGFLQEFARASDHRPEVLLSFGFVPKLESKVGLIDWLIQDPGNEAVAREQDFVKRLAACEPEARRPQLVDLYKRVIDGVADLGFPLSVHFEAPYGLARPAFETFAEMLGYWSPSVT
>NZ_CP009447.1|WP_005101995.1|273227_273758_+|N-acetyltransferase
MEPVELQTDRLVLRAVTGDDETAIVYACNDREILHYLPLPVPYTAEAAGNFIATSAQEWVDGSRYGFGFFLADTGELAGTCALKSISLGVLEVGYWSAPRHRRKGLAAEAVRRLCQWGFEELSAHRIEWWAVVGNDGSRAVAEAVGFEMEGLLRRRSYRRDEPADWWVGGLLRRPE
>NZ_CP009447.1|WP_005101425.1|274615_275737_-|2-methylcitrate-synthase
MTTATPTIHKGLAGVVVDTTAISKVVPETNSLTYRGYPVQELAANCSFEQVAYLLWHGELPSEGELALFNQRERAQRRLDRSLMALLAKLPETCHPMDVVRTAISFLGAEDPSEDDSSPDANYAKSLRMFAVLPTIVAADMRRRRGLDPIQPHSHLGYSANFLRMCFGEVPDPVIVKAFEQSMVLYAEHSFNASTFAARVVTSTQSDIYSAVTAAIGALKGSLHGGANEAVMHDMIEIGDASKAAEWLHGKRARKEKIMGFGHRVYKNGDSRVPTMRAALGDVARVRDGRQWLEIYKVLEAEMNAATGIKPNLDFPTGPAYYLMGFDIPSFTPIFVMSRITGWTAHIMEQSAANALIRPLSDYSGKPQRSLAS
>NZ_CP009447.1|WP_005100465.1|275736_276651_-|methylisocitrate-lyase
MSSLLASATDAATKRAALRAGLSSGELLRFPGAFSPLVAKLIQEIGFEGIYVSGAVLSADLGLPDIGLTTLTEVSARGRQIAAVSDLPTLIDADTGFGEPMSAARTVTVLEDAGLSGCHFEDQVNPKRCGHLDGKAVVETAEMVRRLRAAVSARRDPNFVICARTDAAGIEGLPAAIDRAKAYADAGADLIFTEALSNIGEFEKFRTAVDIPLLANMTEFGKSDLVTASQLREVGYNVVIYPVTTLRLAMFAVEQGLREIDSAGTQSGLLDQMQHRSRLYELLRYSEYNQFDTEIFNFSLNGGQ
>NZ_CP009447.1|WP_005102150.1|276647_278153_-|2-methylcitrate-dehydratase
MHVHSVRTRRSAEEFPRDQHLAWKIAEIASDPVAVPADTAAMVINRVIDNAAVSAASVIRRPVTVARRQAQAHAAAPGANVFGIGGGYSAEWAAWANGVAVRELDFHDTFLAADYSHPGDNIPPLVAVAQQLGVGGTDLIRGLATAYETQINLTRGICLHEHKIDHVAHLGPAVAAGLGTMLKLDTETIYQAIGQALHLTTATRQSRKGLISSWKAYAPAWAGKVAIEAVDRAMRGEGAPSPIWEGEDGVIAWLLGGPEKVYEVPLPGPGEEKRAILDSYTKEHSAEYQSQAPIDLARRMRERIGDLSQIATIVLHTSHHTHVVIGTGSGDPQKFDPDASRETLDHSVMYIFAVALEDGTWHHERSYAPERAHRPETIELWNKISTVEDPEWTRRYHSSNPDEKAFGCKAVVTLKNGEVITDELAIADAHPLGARPFARDNYVNKFTVLSEGVIDPQEQERFLSVAQGLADLKPGSLSELNPLVDAVVLDKAPTTPDGIFR
>NZ_CP009447.1|WP_005101306.1|278270_279692_+|XRE-family-transcriptional-regulator
MSRPFAGARLRRLREERGLTQAALARVLDLSTSYVNQLENDTRPVTVAVLLRLTERFDLSPHYFSPDSDARLVADLGEIFTEAAIGEVSDLQLEELVARMPSVGQTLVGMHRRLRDVTAELESYRATENAATIGDSIREPMRPMPFEEVRDFFYDHKNYLGELDTAAEDLFEHYGLHIGGLDVQLATVLKQDHGVTVAVDKGGSLSDSSKRRFDGDAGVLRVAHWLTPGQRAFQMATQLALLTQTETMAAILSGAEQLSPEAIGVARIGLANYFAGAFLLPYKQFHHAAESSRYDVDILARQFEVGHETVCHRLSTLQRPSMRGVPFILVRTDRAGNISKRQSATAFHFSRVGGNCPLWVVHEAFSNPGKFVTQVAEMPDGRTYFWVARTSSTSTGGFLSTPKSFAIGLGCDIAHAHRLVYSTGIAIDDPSTAVPIGPGCKVCVRESCAQRAFPYIGRSVHVDEDASSGLPYT

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Crispr_ID: NZ_CP009447_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009447_2

728825-728955

Orphan

Consensus_repeat	Method
GTATGTCCGACCAGGGTTGCGTGCTTTTCCTCTTCTACCCGCACGG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP009447_2

>merge|NZ_CP009447|2|728825-728955|CRISPRCasFinder
GTATGTCCGACCAGGGTTGCGTGCTTTTCCTCTTCTACCCGCACGGGGAGCTGCTTGACTGGTCGTCGTGAGGCCTGGGGGGTTGGTATGTCCGACCAGGGTTGCGTGCTTTTCCTCTTCTACCCGCACGG

>NZ_CP009447|2|2|728825-728955|CRISPRCasFinder
GTATGTCCGACCAGGGTTGCGTGCTTTTCCTCTTCTACCCGCACGG	GGAGCTGCTTGACTGGTCGTCGTGAGGCCTGGGGGGTTG
GTATGTCCGACCAGGGTTGCGTGCTTTTCCTCTTCTACCCGCACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009447.1\|WP_005071294.1\|721590_722985_+\|mammalian-cell-entry-protein	unknown	unknown	gnl\|CDD\|273384
NZ_CP009447.1\|WP_005109133.1\|734790_736320_+\|succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143417
NZ_CP009447.1\|WP_005094894.1\|726347_726830_+\|mammalian-cell-entry-protein	unknown	unknown	unknown
NZ_CP009447.1\|WP_005062218.1\|736378_737245_+\|polyphosphate-kinase-2	unknown	unknown	gnl\|CDD\|213852
NZ_CP009447.1\|WP_005102338.1\|724147_725674_+\|MCE-family-protein	unknown	unknown	gnl\|CDD\|273384
NZ_CP009447.1\|WP_005104686.1\|734214_734748_+\|DUF664-domain-containing-protein	unknown	unknown	gnl\|CDD\|368218
NZ_CP009447.1\|WP_005062233.1\|728367_728532_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009447.1\|WP_074343021.1\|720523_721594_+\|mammalian-cell-entry-protein	unknown	unknown	gnl\|CDD\|273384
NZ_CP009447.1\|WP_005101011.1\|722981_724148_+\|MCE-family-protein	unknown	unknown	gnl\|CDD\|273384
NZ_CP009447.1\|WP_005071290.1\|725670_726348_+\|mammalian-cell-entry-protein	unknown	unknown	unknown
NZ_CP009447.1\|WP_005062210.1\|738457_738649_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009447.1\|WP_005100757.1\|732897_734160_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340951
NZ_CP009447.1\|WP_005071286.1\|732447_732786_-\|ArsR-family-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP009447.1\|WP_005071297.1\|719508_720543_+\|mammalian-cell-entry-protein	unknown	unknown	gnl\|CDD\|273384
NZ_CP009447.1\|WP_016892463.1\|731939_732455_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176908
NZ_CP009447.1\|WP_005100741.1\|729992_731573_-\|PE-PPE-domain-containing-protein	unknown	unknown	gnl\|CDD\|369775
NZ_CP009447.1\|WP_005101016.1\|737624_738461_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009447.1\|WP_005062254.1\|718309_719509_+\|MCE-family-protein	unknown	unknown	gnl\|CDD\|273384
NZ_CP009447.1\|WP_005062235.1\|726826_728338_-\|trehalose-6-phosphate-synthase	unknown	unknown	gnl\|CDD\|340820
NZ_CP009447.1\|WP_005071289.1\|728983_729931_+\|YHYH-protein	unknown	unknown	gnl\|CDD\|379520

Protein	Function_ID	Function_description	E-value
NZ_CP009447.1\|WP_005071294.1\|721590_722985_+\|mammalian-cell-entry-protein	gnl\|CDD\|273384	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells. [Cellular processes, Pathogenesis].	1.2585e-65
NZ_CP009447.1\|WP_005109133.1\|734790_736320_+\|succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143417	cd07099, ALDH_DDALDH, Methylomonas sp. 4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.	0
NZ_CP009447.1\|WP_005062235.1\|726826_728338_-\|trehalose-6-phosphate-synthase	gnl\|CDD\|340820	cd03788, GT20_TPS, trehalose-6-phosphate synthase. Trehalose-6-Phosphate Synthase (TPS, EC 2.4.1.15) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.	0
NZ_CP009447.1\|WP_005062218.1\|736378_737245_+\|polyphosphate-kinase-2	gnl\|CDD\|213852	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1). [Central intermediary metabolism, Phosphorus compounds].	3.03987e-160
NZ_CP009447.1\|WP_005102338.1\|724147_725674_+\|MCE-family-protein	gnl\|CDD\|273384	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells. [Cellular processes, Pathogenesis].	5.86975e-70
NZ_CP009447.1\|WP_005104686.1\|734214_734748_+\|DUF664-domain-containing-protein	gnl\|CDD\|368218	pfam04978, DUF664, Protein of unknown function (DUF664). This family is commonly found in Streptomyces coelicolor and is of unknown function. These proteins contain several conserved histidines at their N-terminus that may form a metal binding site.	1.24205e-18
NZ_CP009447.1\|WP_074343021.1\|720523_721594_+\|mammalian-cell-entry-protein	gnl\|CDD\|273384	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells. [Cellular processes, Pathogenesis].	8.65637e-71
NZ_CP009447.1\|WP_005101011.1\|722981_724148_+\|MCE-family-protein	gnl\|CDD\|273384	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells. [Cellular processes, Pathogenesis].	4.81638e-60
NZ_CP009447.1\|WP_005100757.1\|732897_734160_+\|MFS-transporter	gnl\|CDD\|340951	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters. The gene encoding Sinorhizobium meliloti membrane protein MosC is part of the mos locus, which encodes the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine. MosC belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.12475e-82
NZ_CP009447.1\|WP_005071286.1\|732447_732786_-\|ArsR-family-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.1647e-15
NZ_CP009447.1\|WP_005071297.1\|719508_720543_+\|mammalian-cell-entry-protein	gnl\|CDD\|273384	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells. [Cellular processes, Pathogenesis].	7.05527e-73
NZ_CP009447.1\|WP_016892463.1\|731939_732455_-\|hypothetical-protein	gnl\|CDD\|176908	cd08899, SRPBCC_CalC_Aha1-like_6, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	2.76882e-38
NZ_CP009447.1\|WP_005100741.1\|729992_731573_-\|PE-PPE-domain-containing-protein	gnl\|CDD\|369775	pfam08237, PE-PPE, PE-PPE domain. This domain is found C terminal to the PE (pfam00934) and PPE (pfam00823) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands.	4.12258e-53
NZ_CP009447.1\|WP_005062254.1\|718309_719509_+\|MCE-family-protein	gnl\|CDD\|273384	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells. [Cellular processes, Pathogenesis].	7.68065e-62
NZ_CP009447.1\|WP_005071289.1\|728983_729931_+\|YHYH-protein	gnl\|CDD\|379520	pfam14240, YHYH, YHYH protein. This domain family is found in bacteria, eukaryotes and viruses, and is typically between 141 and 198 amino acids in length. There is a conserved YHYH sequence motif.	2.68934e-11

>NZ_CP009447.1|WP_005062233.1|728367_728532_-|hypothetical-protein
MPAKTDPAAIDDLEPLTDETAHQAQRVVAAYANDADECRMLLAMLGIGPTKVDA
>NZ_CP009447.1|WP_005062235.1|726826_728338_-|trehalose-6-phosphate-synthase
MATQSDERSPVKPVTGTSDFVVVANRLPIDLVKLPDGSTTWKRSPGGLVTAMEPLLRKRRGAWVGWPGVPDADVEPVSEDDMVLYSVRLSTQEVAEYYEGFSNATLWPLYHDVIVKPEYHREWWQAYVDVNRKFAEATAAVAAEGATVWVQDYQLQLVPKMLRMLRPDLTIGFFLHIPFPPVELFMQMPWRTEIVDGLLGADLIGFHLAGGAQNFMYLARRLVGASTSRASIGVRSRFGEIRVGFRTVKVGAFPISIDSTQLDSVSRSRQIRQRAKEIRAELGGPRKILLGVDRLDYTKGIDIRLHAYEELLAEGRASREDTVFVQLATPSRERVDSYKKMRGDVEQQVGHINGEFGEVGHPVVHYLHRPVPREDLIAFFVAADVMLVTPLRDGMNLVAKEYVACRSDLGGSLVLSEFTGAAAELRQAYLVNPHDIDGVKDGIESALNQTPEEGRRRMRALRRQVLAHDVDRWARAFLEALSTPATGDSIAPEQPAVLGGEPL
>NZ_CP009447.1|WP_005094894.1|726347_726830_+|mammalian-cell-entry-protein
MRWLARIFVAVTVLVVVGLSAAAGGMYWHRVDTVASRAAGETLIKQAGKQIGSIFGYDYQTVERSLDEQYAGLTPEYRREFEDKANREIIPQAKQRKIVSQTSIVGTGIIAAHRDSAQVVVYMNRTITDQSRTPVYDSSSIQVDYTRAGDKWLISYITPL
>NZ_CP009447.1|WP_005071290.1|725670_726348_+|mammalian-cell-entry-protein
MTEEKKSASQTTRRRAARPAGPTGEVSAEPISVSLGRTEALSKPDPTVADSRRPGNTRGVLRAATVLVVVLVGALGVALALMGRAQHRDDLRAARDQRFVDTAVQTVTNMMTYSPDSIDKNVDQFVNSTSGPLRGTFNPDNTANLKALYHQTGTSSEVVIKKASLESIDEVSKKASILISARVTLTNADSGVNEPSKSYRMRMIVAEDQQGNMTAYDLRWPDGQS
>NZ_CP009447.1|WP_005102338.1|724147_725674_+|MCE-family-protein
MEKLIKIQLAIFAAVTVISVALMAIFYLRVPTALGIGKHDVKAQFVASGGLYQNANVTFRGVQIGRVTDVELTPEGVTATMRLNDNVKVPGNVVAAVKSVSAIGEQYVDLVPPPTGAAGTLRSGDVIGADRTSIPTDVSTLLRQADGLVNTVADTRLREVLAEAFKAFNGSGQELSRLIDSSRLLIQEANTNYDSTTKLIDQVGPLLDAQIRSGDNIRGSVSSLAALTEHFARADPQLRQFLKVAPGASEQASQLFAGIRPSFPVLAASLANLGRVGVIYNKSIEQSLVILPALFSALLTVAGGAPMDEGAKLDFRLNLGDPPPCLTGFVPPPLMRTPADETLRELPRDMYCKTAQNDPSAVRGARNYPCQEFPGKRAPTIQLCRDPRGYVPIGSNPWRGPPAPYDTPVEDPRNILPPNKFPNIPPGAEPDPGTPTLPPPPPGPEVPPAGGDVMPVSAQSGPMAARAYDPKNGVFLDANNQPSVYAPALDRGTEAETWADLMLGPKPV
>NZ_CP009447.1|WP_005101011.1|722981_724148_+|MCE-family-protein
MSRNVLRAAAMGVGVAVVVSGCQFNGLNSLNLPGTAGHGSRSYTVTVELPDVTTLPQNSPVMVDDVTVGSVSGIDAFQKPDGSWYAGVKVSLEPEVHLPANAVAKVAQTSLLGSQHIELAAPVGEPAVGKLTGGATIPLSRTGKYPSTEEVLSALSVVVNKGNLGALQDITDETYNLFKGRTGNLTQVLPKLATLISSLNSQRDDIISAIEGIDKFSRVLAEHKESLGRAIDSIEPALKVLNENRANIIEAFRSVGNLAKITDRVLRTTKDDIVADLKGLYPVVRALAENRDVLIDSLDLLPTFPFSTKYLRNAVRGDYLNVFVTFDLTARRLGETLFTTSFFDPNMQHFNDVVNPPEWLIGSMANLNGKETSPFDLPAPAAPQGGGR
>NZ_CP009447.1|WP_005071294.1|721590_722985_+|mammalian-cell-entry-protein
MTTSKTWLKRGAFAMLSVALVGGLLYWVWPSRGTYKIVGHFASAVGLYPGDDVRILGVKAGRISAVEPREGDVKVTMEMPDKFKVPEGAQAIIMAPNLVTARFVQLTPAYTDGKALQDGASLGLDKTAVPIEWDEVKTELAKLSDSLGPQGQSKGPVSDFINQAATTFDGNGDSFRNAVRELSQAAGRLGDSRTDLFGTIKNLQTLVDALANSNEQIVQFSTHLASVSKVLAASTENLGATLGALNQALTDVRGFLGDTNSALIDQVNKLSDFVKIFSDQSDDLEQILHVAPNGLANFYNIYNPAAGTLNGMLSIPNLANPVQFICGGVFETGTKTEYLKRAEICRERMGPVLRRATFNYAPILLHPINQISAYKGQIIYDTPETEAKSQAPREDLVWVRPNGAPPPPKPSPQDLSALMLGPDEVNAPPPPGTEVRPAEPGPVPPGFPATADDAPPPAIPGAPR
>NZ_CP009447.1|WP_074343021.1|720523_721594_+|mammalian-cell-entry-protein
MPSKMSDIQEKDPVRTGIFGIAVVSMLVLVAFGYTGLPFWPQGKQYTGYFADSGGLESGGNVFVSGIKVGQVKDVSLAGNKVRVDFTVDRSIRLGDQSLAAIRTTTVLGEKSLSVTPAGAGRITEIPLGRTTTPYTLNSALSDLGASAGGIDKAQLDQSLQVITEAMRDATPQLRGALDGVASLSRTLNARDAALEQLLTHAKSVSGILSERAGQVNKLVTDGNQLFAALDERRLAIGELINRIQGLSQQISGFVADNRQEFRPTMEKLSVVLDDLLDRKAHISEALKRLPGYGTALGEVVSSGPGFHVNVYGFPPATLTAVAFDTYFQPGKLPASLSDYLNGLIGERQIMRPKSP
>NZ_CP009447.1|WP_005071297.1|719508_720543_+|mammalian-cell-entry-protein
MKRATQIKVIVFTVVMLLVAAGLIITFGEFRFGSGKRYHAIFSTASDLRSGQKVRIAGVPVGRVKNVSLNHDNSVEVTFDVDSKYQLYSSSRAIIRYENLVGDRYLEITAGPGELHKLPDGGTLDKEHTQPALDLDALLGGLRPVLKGFDAAKVNEISNAFIQILQGQGGTLSQLLGDTSSFTSGLAERDQLIGDVINHLNEVLATVDSKSTQFSSSVDQLQQLISGLAQQRDVVAGALPPLASTASSLESVLKDTRPYIKGTIEQARQLATRVDERKADVNVVVENLAENYLRLNALGAYGSFFNIYYCSIRIKVNGPVGTDWLIPFGGPPDPSKGRCAFKNE
>NZ_CP009447.1|WP_005062254.1|718309_719509_+|MCE-family-protein
MSDTSTRRAVRLAGTVLASVLVALTVLTYLAYNDAFADTKPITVVSPRAGLVMEEGGKVKFHGLQIGKVTSISYANDQAKLELAVNAKDLRLIPSNATVRIAGTTVFGAKSVEFLAPQKPSDSSLRPGATVTAEAVALEVNTVFENLTRLLGRLDPVSLNATFTALSEGLRGNGDNFGQGLVELDQYLDQLNPKLPALQQDFRQAGQVGQIYGDAAPDIVRILDNLPALSRTVVDQQQDLKATLLAAIGLGNNGYETLAPAEKDLTAALQRLRAPATLLGRYSPEIPCTLQAISKALVTFTPLIGGVRPGLFLTNSFPLGAPVYTYPDSLPIVNASGGPNCRGLPNIPTKMQNGSWFRSPFLVTDNAYIPYKPLEELQVNAPDTLQYLYNGAFAKRSEF
>NZ_CP009447.1|WP_005071289.1|728983_729931_+|YHYH-protein
MGVVLWLICVAVVAACTGPPRQGAQRLTLDVGHDYGDLFADGKLPVGDGKIVTDGARGGYVYACPRYAESFAAGAAIGAAVRGPWFSADGQWYYPDMKTHVQGHVQHHGEFSETKSEGVRVITTNDLPRNHSTGRFPVATDDTAYQYDRNPNAITAQDLTYVLASEPTYGVPQCIGPEVGVMLSGVVLFSALDAGGRDAGAWEVQDGCAGHPEVTGSYHYHTPSPCLATSDIAEVVGYALDGFPITGARVSDGNILTTRDLDECHGITSSVRLDGRDVETYHYVMTQDYPYSVNCFRGRPTTVQGRAQRPVPPGR
>NZ_CP009447.1|WP_005100741.1|729992_731573_-|PE-PPE-domain-containing-protein
MAGQYSVSGKHHSLRRYVAAIAAVAATCTVLAPLAMESRTIASTLASYVIGIGGNNDGASANIPHKLGGAYSVDYHPVSYPGAIWPVSGLTAPTFKTSVAQGHTNLNDEIVTAGNQPITIVGYSLGAVVVSKSHSDLQQQYPDGNPNIQFVLMGSANTPNGGIFARFPWLKIPLADIESNGAWEPDQFTTKVINTEYDTYGDFPAYFNPLALANSIAAIQYAHPDAYYDRIDPAALDDPDNPNVVKSVQGNTTYYLVRAEHLPLLQPLRDLTNPIGASFILDAIEPTLRVFIDMAYNRDTSPGTTTQFGFFTPSKNIVDALNKLPTAIAEGAHNVENGLAGATPKQSASTEKPASPPVPQSGPTNPRSATTQIPAPEAPTPSVISLTTAEPSAPPASAKAADPTAIPVSTAVASAARDQEFKPDKKPDPKSTPPSTKDSVEEADKSKHTLKPTLQLPKISVAQPGTAPKSPKFPSLKDHLKSVPGLSEKKDPAADTSSKRSQPANAPTHTSDKTSDHASETGRGAA
>NZ_CP009447.1|WP_016892463.1|731939_732455_-|hypothetical-protein
MTNPLDATLAPCEDHEGRWVLTMSRDLNHPPEKVWPWLVDPDRLRQWSPAIPDRPLDSAGPANVQETSADPVLDGEVLAVDPPRELIHRWGPDDTLRWRIEPTDTGCRLTLEHSMADRGHAAGNAGGWHICLDTLSLAVAGTPRGRVVGMDAMKYDWQSLNDRYTEILTID
>NZ_CP009447.1|WP_005071286.1|732447_732786_-|ArsR-family-transcriptional-regulator
MDAFMVIADPTRRRIIDALRGGSADVTTLIERLDLSQSSVSKHLGVLRDAGTVRVEVAGKRRVYHLADDPLPAVLAWVTPYHRKWASALDRLTFLIDSDAGMHDTEKEVDRD
>NZ_CP009447.1|WP_005100757.1|732897_734160_+|MFS-transporter
MLLAEVAVGGARSLAQRRGEDYFLTKPLRMRVAVIGVFASFGLVVATWAVHLPTMKQATGMSSTELGFVVLGLGVGALLGMQLSGVLVDRFGSGPIAIVGGAAMALGVNIPLAAHAVWVAGVGAVLCGVTVGITDVAMNAAAVDVERFYGRPIMASFHGVFSVGNVVGAGIGSAAFALHLKVWATVLGVTVLCLALLTCSASVLLRGKLRAGEAEAPDTVPYTMPPPVSYRRGQVVVLGLLAFLLMLSEGSATDWSSLHAQEHLGASHSEGAFAFGVFMLAMTVGRFTVDKLVERVGRVRVLRGGCALAAVGMLTVIAAPVLPLTLAGWVAVGLGLAGGVPQVFTVAGNIDEQHEGRVLSRVVGTGYVAVLGGPALIGWVADALSLNTALVLPIFAVVICGCAAGALAVTPPSKSVKSQR
>NZ_CP009447.1|WP_005104686.1|734214_734748_+|DUF664-domain-containing-protein
MTDTDIVAAASARELLRDSFTRIIEHVGEVTDGLPDPALTYRPTPDANSIAWLIWHSARCQDVQICAMTGAEPVWTARGWEPRFGLDLPADSNGYGHTADDVAKVVATADQLSGYYRDVHEMTLGYVDTLTDSELARVVDRQWEPPVTASIRLVSIVDDCAQHLGQAAYLRGIIPTN
>NZ_CP009447.1|WP_005109133.1|734790_736320_+|succinate-semialdehyde-dehydrogenase
MTTTSEKLVSTPRDTAHDVRNPANGQVVGRVNWTDPSDIPGIVAQLAKAQPSWERLGPEGRGQVLARFAQWLIDNTGRIEAQLIAETGKSKIDGGIEIPSILAIIAYYAPKAAEFLAPESRPASSIAMNTKKITVHQRPRKVVGVISPWNYPVALGYWDVIPALLAGCSVLLKPSERTPLSDELIANGWAEIGGPPVFEVVHGAREVGEALVDNVDFIQFTGSTATGKKIMERAARRLTPVSLELGGKDPMLVLPDADVKRAAHAAVWGSMFNAGQTCVSVERVYVHDSVYEQFVDLVVEEVRGLEIGAGLDHSVGAMIDENQLEVVDRHVRQAVSSGARALTGGARIPGHGSFYAPTVLVDVDHSMDCMREETFGPTLPIMRYSEESEAIALANDSEYGLSASVWSKDRRRAERVALQLDCGTVNINDVIMNLSCLTAPHGGWKGSGLGSRFGGVDGLRKYCRTEAIVDTRVTLPSEPLWYSGPSWLAPVALKSLTKLSNKALRPFRR
>NZ_CP009447.1|WP_005062218.1|736378_737245_+|polyphosphate-kinase-2
MTDTITAAAEGYTVDDDDDDDPVLIAPDGVAVDTWRENYPYDERMSRHQYELEKRLLQIELLKLQNWSKRTGARHVILFEGRDAAGKGGTIKRFMEHLNPRGARVVALEKPTERERTQWYFQRYVPHLPAAGEMVFFDRSWYNRAGVERVMGFCSDEQHSEFIHQAPLFEQMLVNDGISLTKLWFSVSAAEQRTRFAIRQVDPVRQWKLSPMDLASLDKWDAYTKAKEEMFSLTDTDHAPWIVVKSNDKKRARVNAMRHVLGKFDYDDKDLDVVGQADPLILGRALTD
>NZ_CP009447.1|WP_005101016.1|737624_738461_+|hypothetical-protein
MRFLFAVLLWLLTTAALAVTIAAAWAQSRLVDENGYAALTAPAAADLRVQHAIAGELTTQIVSLSKKQGSRVDESQVAELVASYTSGPQFEADFGSVNRMAHQWLFTNSSAAQRDSRGGWQIDIAPMIKSLAPQGLSIKAPETLKVSVTDDKLAGLTPGRLVPVARFGQLAVWIFFGLTLVLAGLTQLAVRSRAKGLAGLGISALLVGAAGWAGLEIGRSYLDRPLSRVTGNVRDVADGLVTAAVGNAHHWLSLTMAAGGLVIVIGVVSGLVGALLRR
>NZ_CP009447.1|WP_005062210.1|738457_738649_-|hypothetical-protein
MTNNLFVGLSENGWDHAPWDAEPEFSPSELDILLDRRLSASDAAERIGCVEHDVQRIRDAHAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP009447_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009447_3

1322158-1322246

Unclear

Consensus_repeat	Method
AAGCTCAGCAGAAGTCAAAGCGTG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP009447_3

>merge|NZ_CP009447|3|1322158-1322246|CRISPRCasFinder
AAGCTCAGCAGAAGTCAAAGCGTGCGTTCCTTTTGCATCTGCACTGTTGCTTCCGATCGTTTCACAAGCTCAGCAGAAGTCAATAGCGT

>NZ_CP009447|3|3|1322158-1322246|CRISPRCasFinder
AAGCTCAGCAGAAGTCAAAGCGTG	CGTTCCTTTTGCATCTGCACTGTTGCTTCCGATCGTTTCAC
AAGCTCAGCAGAAGTCAATAGCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009447.1\|WP_005056343.1\|1321855_1322110_-\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
NZ_CP009447.1\|WP_005056325.1\|1315050_1316031_-\|ribosome-small-subunit-dependent-GTPase-A	unknown	unknown	gnl\|CDD\|224084
NZ_CP009447.1\|WP_005102372.1\|1317381_1318137_+\|SOS-response-associated-peptidase	unknown	unknown	gnl\|CDD\|376837
NZ_CP009447.1\|WP_005070149.1\|1323990_1324476_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP009447.1\|WP_005103011.1\|1326249_1327047_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|379293
NZ_CP009447.1\|WP_005056341.1\|1320058_1320277_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein-subunit	unknown	unknown	gnl\|CDD\|180306
NZ_CP009447.1\|WP_005100941.1\|1330817_1331549_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237864
NZ_CP009447.1\|WP_005056347.1\|1323580_1323988_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009447.1\|WP_005070152.1\|1322525_1323503_-\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|224513
NZ_CP009447.1\|WP_005102121.1\|1327065_1328286_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274511
NZ_CP009447.1\|WP_005056357.1\|1330015_1330699_+\|hydroxylase	unknown	unknown	gnl\|CDD\|205967
NZ_CP009447.1\|WP_005056338.1\|1318779_1319487_+\|RNA-polymerase-sigma-factor-RpoE	unknown	unknown	gnl\|CDD\|131992
NZ_CP009447.1\|WP_005056342.1\|1320288_1321779_+\|ATPase	unknown	unknown	gnl\|CDD\|226434
NZ_CP009447.1\|WP_005070160.1\|1318123_1318630_-\|aminoacyl-tRNA-deacylase	unknown	unknown	gnl\|CDD\|237976
NZ_CP009447.1\|WP_005070141.1\|1328282_1329755_-\|ATP-dependent-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|223587
NZ_CP009447.1\|WP_005056340.1\|1319483_1319792_+\|mycothiol-system-anti-sigma-R-factor	unknown	unknown	gnl\|CDD\|274904
NZ_CP009447.1\|WP_005102425.1\|1325576_1326188_-\|acid-phosphatase	unknown	unknown	gnl\|CDD\|139587
NZ_CP009447.1\|WP_005070165.1\|1316027_1317323_-\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
NZ_CP009447.1\|WP_005100274.1\|1319884_1320076_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009447.1\|WP_005056350.1\|1324468_1325575_-\|isochorismate-synthase	unknown	unknown	gnl\|CDD\|224091

Protein	Function_ID	Function_description	E-value
NZ_CP009447.1\|WP_005056343.1\|1321855_1322110_-\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	1.81711e-28
NZ_CP009447.1\|WP_005056325.1\|1315050_1316031_-\|ribosome-small-subunit-dependent-GTPase-A	gnl\|CDD\|224084	COG1162, COG1162, Predicted GTPases [General function prediction only].	4.48344e-92
NZ_CP009447.1\|WP_005102372.1\|1317381_1318137_+\|SOS-response-associated-peptidase	gnl\|CDD\|376837	pfam02586, SRAP, SOS response associated peptidase (SRAP). The SRAP family functions as a DNA-associated autoproteolytic switch that recruits diverse repair enzymes onto DNA damage. We propose that the human protein Q96FZ2:UniProtKB, the eukaryotic member of the SRAP family, which has been recently shown to bind specifically to DNA with 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxycytosine, is a sensor for these oxidized bases generated by the TET (tetrahedral aminopeptidase of the M42 family) enzymes from methylcytosine. Hence, its autoproteolytic activity might help it act as a switch that recruits DNA repair enzymes to remove these oxidized methylcytosine species as part of the DNA demethylation pathway downstream of the TET enzymes.	6.80141e-88
NZ_CP009447.1\|WP_005070149.1\|1323990_1324476_-\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	8.50305e-16
NZ_CP009447.1\|WP_005103011.1\|1326249_1327047_+\|ParA-family-protein	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	1.55407e-78
NZ_CP009447.1\|WP_005056341.1\|1320058_1320277_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein-subunit	gnl\|CDD\|180306	PRK05889, PRK05889, biotin/lipoyl-binding carrier protein.	8.86847e-24
NZ_CP009447.1\|WP_005100941.1\|1330817_1331549_-\|hypothetical-protein	gnl\|CDD\|237864	PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional.	1.7569e-06
NZ_CP009447.1\|WP_005102425.1\|1325576_1326188_-\|acid-phosphatase	gnl\|CDD\|139587	PRK13462, PRK13462, acid phosphatase; Provisional.	4.56665e-128
NZ_CP009447.1\|WP_005102121.1\|1327065_1328286_-\|hypothetical-protein	gnl\|CDD\|274511	TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking].	0.00562194
NZ_CP009447.1\|WP_005056357.1\|1330015_1330699_+\|hydroxylase	gnl\|CDD\|205967	pfam13794, MiaE_2, tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like.	1.36736e-55
NZ_CP009447.1\|WP_005056338.1\|1318779_1319487_+\|RNA-polymerase-sigma-factor-RpoE	gnl\|CDD\|131992	TIGR02947, putative_RNA_polymerase_sigma_factor, RNA polymerase sigma-70 factor, TIGR02947 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and (with the exception of a paralog in Thermobifida fusca YX) one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria and each gene examined is followed by an anti-sigma factor in an apparent operon.	4.28494e-111
NZ_CP009447.1\|WP_005056342.1\|1320288_1321779_+\|ATPase	gnl\|CDD\|226434	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms].	2.06113e-55
NZ_CP009447.1\|WP_005070160.1\|1318123_1318630_-\|aminoacyl-tRNA-deacylase	gnl\|CDD\|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	7.81353e-66
NZ_CP009447.1\|WP_005070141.1\|1328282_1329755_-\|ATP-dependent-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	2.7315e-150
NZ_CP009447.1\|WP_005056340.1\|1319483_1319792_+\|mycothiol-system-anti-sigma-R-factor	gnl\|CDD\|274904	TIGR03988, antisig_RsrA, mycothiol system anti-sigma-R factor. Members of this family are the anti-sigma-R factor RsrA, which contains a CXXC motif as a thiol-disulphide redox switch. It interacts with sigma-R. It regulates and is regulated by the mycothiol system, which occurs in many actinomycetes. [Transcription, Transcription factors].	3.17204e-33
NZ_CP009447.1\|WP_005070165.1\|1316027_1317323_-\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	7.98798e-141
NZ_CP009447.1\|WP_005070152.1\|1322525_1323503_-\|diacylglycerol-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	9.36134e-46
NZ_CP009447.1\|WP_005056350.1\|1324468_1325575_-\|isochorismate-synthase	gnl\|CDD\|224091	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	5.02897e-109

>NZ_CP009447.1|WP_005056343.1|1321855_1322110_-|WhiB-family-transcriptional-regulator
MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLTWALESGQDAGVWGGLSEDERRALKRRNARARARSAV
>NZ_CP009447.1|WP_005056342.1|1320288_1321779_+|ATPase
MSTLGDLLAEHTMLPGDAVDHLHAVVAEWQLLADLSFADYLMWVHRDDDAFVCVAQCRPNTAPTIIDNDAVGTIAKIADVPLVEAAFASGAIERESDSDLTEHASELNVEAVPVRCGDRTVAVLTHQTALASRLKKGTLERAYLECAGDLLLMLTEGTFPNVADQAMSRSSPRVGDGFIRLDVSGGVKYASPNALSAYHRMGLASDLQGHNLMDVTKPLISDPFEGQELAAHIRDVLAGGPSMRMEVDAGGAAVLIRTLPLIARGASEGALLLTRDVTEVKRRDRALLSKDATIREIHHRVKNNLQTVAALLRLQARRTPNDEAREALFESVRRVSSIALVHDALSMSVDEEVNLDEVIDRIMPIMTDVATVDTKVRVSREGALGVLDSDRATPLIMVITELVQNAIEHAFDEGAQGQVVIRAERSARWLDVVVHDDGRGLPEGFSVETSDRLGLQIVRTLVSAEIDGSLDMRSDPEGGTNAVLRVPLGRRARLMA
>NZ_CP009447.1|WP_005056341.1|1320058_1320277_+|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein-subunit
MAEEVHAEIVASVLEVLVKKGDAIAEGDTIVLLESMKMEIPVLAEVAGTIGDVSVSVGDVIQAGDLIAVIDD
>NZ_CP009447.1|WP_005100274.1|1319884_1320076_-|hypothetical-protein
MYFLGHLRATSLSSTSGYRSSVSNHTYGIHAFNHPYRHERLDTHTGAHHAQLACQPGPDPEPI
>NZ_CP009447.1|WP_005056340.1|1319483_1319792_+|mycothiol-system-anti-sigma-R-factor
MTDGELKKSVDKSGNCEVSGCAEVIAEVWTLLDGECSPESSARLRHHLEECPGCLQHYGIEEQIKTLVARKCGGEKAPDGLRERLKLKISQTTVIQQRAENS
>NZ_CP009447.1|WP_005056338.1|1318779_1319487_+|RNA-polymerase-sigma-factor-RpoE
MACLERPMSVPIRMVGVATERTAVTSMDSAAELPGLVHVETEAERVARFERDALPLLDQLYGAALRMTRNPADAEDLVQETMVKAYAGFGTFKEGTNLKAWLYRILTNTYINIYRKKQRQPAEYPTEEITDWQLAANAEHTSTGLRSAEIEALDGLPDDEIKEALNKLPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRDLLSEVAKDRGFLRNNELAEGRA
>NZ_CP009447.1|WP_005070160.1|1318123_1318630_-|aminoacyl-tRNA-deacylase
MGSKAVKAATPAVAALIAGGAEYELLPYEHRAGEHAFGDEAVRALAGSGLAPEQIFKTLLISLDRGSDLAVAVIPVPATLSLKAAAAALGRAKATMADPAAAERSSGYVVGGISPLGQRKQLPTVIDASALTWERILCSAGKRGLQMALAPDDLVRLTGAVTASITAG
>NZ_CP009447.1|WP_005102372.1|1317381_1318137_+|SOS-response-associated-peptidase
MCGRYAVTIDPALLAAEIDAVDETATSAVQLPTIPNYNVAPTDPVLAVVARHHQPGDVPARRIRAMRWGLVPNWIKARQDGRPESKGAPLINARAETLTTAATFRTAAQSKRCLVPMDGWYEWRTQEGAKTAFYMNAGDGKRLFVAGLWSVWKPAKAAVPLLSCTIVTTDAVGPLREIHDRMPLMLGADSWDSWLDPDRELDLGLLRVPDSVAGIETRRVSSLVNSVANNGPELLVPDDGAAAVGEQITLL
>NZ_CP009447.1|WP_005070165.1|1316027_1317323_-|3-phosphoshikimate-1-carboxyvinyltransferase
MTSGLWQAPTIDGSICATITMPGSKSQTNRALVLAALAAREGGTSTVSGALRSRDTDLMIGALRSLGFDIVGDGTDLTVSPGAEDDDASTVDCGLAGTVLRFLPPVAALRHAPTVFDGDEQARARPIAPLLDALRSTGVGIDGQHLPFTVAGTGQVHGGEVGVDASGSSQFVSGLLLSGAAFSAGLTAVNTADVLPSGPHVVMTVTMLREAGIAVDDSVPGRWRIDPQPIPAHQWVIEPDLSNALAFIAPALATGGTVRITGWPRQSTQPARQIEDVVRQFAQTVSLTDTHLEVTGQSGYGGVDLDLSEVGELTPTVAALCALAEPGAVSTLRGIAHLRGHETDRLKALAHEINALGGRCEETQDGLRIVATDLRGGVWGSYADHRMATAGALVGLKVPGVSVDDIATTSKTLPDFPGMWADMIAQSERAS
>NZ_CP009447.1|WP_005056325.1|1315050_1316031_-|ribosome-small-subunit-dependent-GTPase-A
MSPREYDESDARIRPGRRSRPRTKIRPDHADAAPAMVVTVDRGRWGCVLHDDPAQQVTAMRARELGRTPIVVGDTVSLVGDLSGRPDTLARIVRLEERRTVLRRTADDTDPFERIFVANADQLLIVVAVADPPPRTGLVERALIAAYAGGLTPILALTKTDLADPDSFAAQFADLDIRVIGAGRDEPLAPIMEVLTGRLTALLGHSGVGKSTLVNRLVPEAGRATGEVTGVGKGRHTSTQSVALPLCPSGWVIDTPGIRSFGLAHIRPDDVLAAFSDLSEAIEDCPRGCQHLGPPADPECALDELEGASAKRVTAVRQLLSVLTTA
>NZ_CP009447.1|WP_005070152.1|1322525_1323503_-|diacylglycerol-kinase
MRAVLIVNPNATSTTAAGRDLLAHALESRVHLQVLHTDHRGHASELARRAADEGAAVIVVHGGDGTVSEVVNGLLGQPGHPTPGPVPAVAVVPGGSANVFARTLGISADPAQATNQVVDLLDEHRREHRRWRRIALGHCGERWFIFNAGMGLDGEVVAAMEAHRNKGKQVTAGRYVARSVLAFFRAARRQPTLTVELPGHEPQAGIHFAFISNSNPWTYANERAIWTNPGTGFESGLGIFASKSMNVVANLGLVRHMVGAPRADRPAAKHLLREDDIPWVRVRASAPIATQVDGDFLGLRSDLTFTAVPDVLDVVAPAKPAGKQS
>NZ_CP009447.1|WP_005056347.1|1323580_1323988_+|hypothetical-protein
MTTTAPNTVRRAGMIVAGEGAVGLVIALVLVVRAASGADQHVVNGYGTAAWFSVFGTAVLAAGLALISGRRWGRGIAVMMQLLLLPVAWYAAVGSHQLALGVPLAIVAVAALVLLFSPTAQMWAGGDEAGADESD
>NZ_CP009447.1|WP_005070149.1|1323990_1324476_-|N-acetyltransferase
MTNTLIRRAAEADIPAIVGLIEDLAEYEHARDECLITEQQLHQALFGSHPALFAHVAESGGVICGTAVWFLNFSTWTGHHGIYLEDLYVRPEQRGAGLGKALLSALAAECVANGYTRLDWAVLDWNTPSIKFYDSLGANPQSDWITYRLQGPALAELAKDG
>NZ_CP009447.1|WP_005056350.1|1324468_1325575_-|isochorismate-synthase
MTATDSPARPHFVMSRAAAALYAYGRDATYDDAFTAAEALRTGRHHMLVGALPFDTSHPVALTAPVTVQRGLPQEFYGAMPNTQVAQQIPAPSEHLRRVTEAVEVLRSDAGLAKVVLARVLELRAESPVDPLVLTHRLIRNDPDANSFCVDLSPAGDRFRGHTMVGCSPELLVERRGDMVICHPFAGSAPRSNDPSQDRRTGEDLAGSHKNRHEHSVVIDQLREDLASLCVDVQVPPEPTLSRTAALWHLSTSISARLRQSSTTALDLALALHPTPAVCGTPTEAAADLIARIEGDRGFYAGAIGWCDRNGDGRWVVTIRCAELSADGTAIRAYAGGGLVAESDPQDELSETTVKFRTVLAGLGAKID
>NZ_CP009447.1|WP_005102425.1|1325576_1326188_-|acid-phosphatase
MSAPLNRMLLLRHGETEWSKIGRHTGRTDLDLTEIGRAQAVAAREVLKDLDLNDPLVLSSPRRRALQTAELAGLTVDTVDEQLAEWDYGDYEGLTTPQIRENDPGWLVWTHGCPGGESVAQVQARADLVITKIAAELTQRDVLLVGHGHFSRALMTRWIDLPLEEGTRLGMATASIAIGGHEHGQRQVAALGLTGYQHPVPSS
>NZ_CP009447.1|WP_005103011.1|1326249_1327047_+|ParA-family-protein
MTRVLAVANQKGGVAKTTTVASLGAALAQAGKKVLLVDLDPQGCLTFSLGQDPDRLGISVHEVLLGQADIKEALLTTTEDLTLLPANIDLAGAEAMLLMRAGREYALKRALESLGDQFDVVIIDCPPSLGVLTLNGLTAADSVMVPLQCETLAHRGVGQFLRTVTDVQQITNPRLTLLGALPTLYDSRTTHSRDVLLDVADRYELPVLAPPIPRTVRFAEASASGASVLAGRKNKGALAYRELAQSLVKHWKSGKAMPTFTPPVD
>NZ_CP009447.1|WP_005102121.1|1327065_1328286_-|hypothetical-protein
MIAPERRTRADIIAAAVIAVVVAVTGAAIWWTSDARATVSRPAAGDIKRPMSATRVPDSVRELWSTASAATRGPVIASGAVVSADGHDVVAHDPATGAQLWSYARRNLDLCGAIGFIDDAVAVYRDARGCGQVTMIDGQTGRRGALRSSANDSKVSLSTDGTYVLALGSTRLELWRSDMVRTLEYGRVVAPLNANSQPRVDCTLKSGAVGSSVLAVLETCPQDPTLRLTLQKPTPKDNDKPEELYSAVLPGVERGSAAKVLAVADTRSAVYLPGTRNELVVFDDRGMRVGATVLPGEISPTNAAAQAGDVITWWTGSQVLVLSASDLSYRFVLPTTTKPLGPGTNMAGELLIPVEGGIDVFNMTTGEFRKNIVVQRNTADEKSPVISAVVGNTLVEQRGSRIFALG
>NZ_CP009447.1|WP_005070141.1|1328282_1329755_-|ATP-dependent-helicase
MSHIEHTFAQLGVREEIARALREAGIEHPFAIQELTLPLALAGSDLIGQARTGMGKTYAFGVPLLHRIATGVEDRPLNGTPRALVVVPTRELCIQVYEDLTKASKYLSAGDREFTVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLAQQGHLQLGGLAMLVLDEADEMLDLGFLPDIERILALAPSADAGRQSMLFSATMPDPIITLARTFMNRPTHIRAEDPQASSVHDSTEQFVYRAHALDKIELVSRILQADGRGATMIFTRTKRTAQKVSDELAERGFAVGAVHGDLGQIAREKALASFRSGQINVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGIAVTLVDWDDIARWQLIDKALGLGVPEPDETYSTSPHLFTELNIAADVTGSIGEKFSGGPKRREPRGERAEGEKPKRTRTRRRTRAGQPTDESAAEAPAPEAATADGDQQAPARRRRRRRRPNATAATTASA
>NZ_CP009447.1|WP_005056357.1|1330015_1330699_+|hydroxylase
MTEPDSLRASGSSTDLDPPGVNQLFAVIAYGEVAAFYRLTDESRMAPDLASKIAIASMAASQMRHYEVLRDAMEAKGIDVLAAMEPYVKTLENYHSLTLPRTWLEAMVKAYIGDSLAADFYGEVVDSLSGESAAVLKSVLGTTGHSEFVIAQVRDAVKENSQQRNRLTLWGRRLLGEAITQAQHVLARHDELAELVMSGGAGLGNLNEFFERLQSAHAERMAVLGLG
>NZ_CP009447.1|WP_005100941.1|1330817_1331549_-|hypothetical-protein
MVGYRGDSRYSSDYEPYDDPYNSETAPQSTEYSGLDEDFEYRPPGSNENWKWVASIAGAVFAIAVIATAVVLSGGNDKPPAAAVTTPVPSLTPVTTTAPPPPPSATSPAKPSTTTVTSTPAQETPTAEPSTEAPPPEPPPSNPMLPPEGQRPITSAAFAYYVTGNQTPGDLLTITYTDGNGVTRTVLGASLPWTMIVTPSPGITGGSITATSFASQVNCSITNSENQMLAVQNSNSIIARCAK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP009447_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009447_4

3666245-3666332

Orphan

Consensus_repeat	Method
CCAGCCACCGCACACGCCGTTGTAGCAGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009447_4

>merge|NZ_CP009447|4|3666245-3666332|CRISPRCasFinder
CCAGCCACCGCACACGCCGTTGTAGCAGCCGTGGCCCCAACCACCCTGGCCGGGGTTCCAGCCACCGCACACGCCGTTGTAGCAGCCG

>NZ_CP009447|4|4|3666245-3666332|CRISPRCasFinder
CCAGCCACCGCACACGCCGTTGTAGCAGCCG	TGGCCCCAACCACCCTGGCCGGGGTT
CCAGCCACCGCACACGCCGTTGTAGCAGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009447.1\|WP_005063565.1\|3675509_3676091_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009447.1\|WP_005102548.1\|3658458_3660249_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NZ_CP009447.1\|WP_005063562.1\|3673685_3674417_-\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|236115
NZ_CP009447.1\|WP_005063550.1\|3665287_3666208_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274648
NZ_CP009447.1\|WP_005063541.1\|3656814_3657597_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319911
NZ_CP009447.1\|WP_005063556.1\|3668255_3668471_-\|antitoxin	unknown	unknown	gnl\|CDD\|379416
NZ_CP009447.1\|WP_005063559.1\|3671908_3672586_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP009447.1\|WP_005105067.1\|3674441_3675530_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224983
NZ_CP009447.1\|WP_024571189.1\|3660342_3660777_-\|DUF779-domain-containing-protein	unknown	unknown	gnl\|CDD\|377532
NZ_CP009447.1\|WP_005066003.1\|3662353_3662509_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239527
NZ_CP009447.1\|WP_005066001.1\|3662669_3664682_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340868
NZ_CP009447.1\|WP_005065999.1\|3666616_3667060_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|378454
NZ_CP009447.1\|WP_005063546.1\|3660757_3662278_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143434
NZ_CP009447.1\|WP_005100882.1\|3672582_3673683_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293841
NZ_CP009447.1\|WP_005102528.1\|3655582_3656788_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|179663
NZ_CP009447.1\|WP_074232589.1\|3664632_3665229_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225767
NZ_CP009447.1\|WP_005102410.1\|3667096_3668233_-\|lipase	unknown	unknown	gnl\|CDD\|367570
NZ_CP009447.1\|WP_005065989.1\|3669388_3671791_-\|magnesium-transporting-ATPase	unknown	unknown	gnl\|CDD\|319795
NZ_CP009447.1\|WP_005066010.1\|3657722_3658469_+\|peroxide-stress-protein-YaaA	unknown	unknown	gnl\|CDD\|234999
NZ_CP009447.1\|WP_005100846.1\|3668525_3669359_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225852

Protein	Function_ID	Function_description	E-value
NZ_CP009447.1\|WP_005102548.1\|3658458_3660249_-\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	0.000121667
NZ_CP009447.1\|WP_005063562.1\|3673685_3674417_-\|enoyl-CoA-hydratase	gnl\|CDD\|236115	PRK07854, PRK07854, enoyl-CoA hydratase; Provisional.	5.5316e-136
NZ_CP009447.1\|WP_005063550.1\|3665287_3666208_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274648	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by Rv1855c from Mycobacterium tuberculosis. [Unknown function, Enzymes of unknown specificity].	6.9961e-72
NZ_CP009447.1\|WP_005063541.1\|3656814_3657597_-\|VOC-family-protein	gnl\|CDD\|319911	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a streptomycin resistance protein.	1.84839e-40
NZ_CP009447.1\|WP_005063556.1\|3668255_3668471_-\|antitoxin	gnl\|CDD\|379416	pfam14013, MT0933_antitox, MT0933-like antitoxin protein. This family of proteins contains the MT0933 protein, which has been identified as an antitoxin to /protein MT0934. This family of proteins is found in bacteria. Proteins in this family are typically between 61 and 90 amino acids in length.	4.21227e-08
NZ_CP009447.1\|WP_005063559.1\|3671908_3672586_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.17233e-21
NZ_CP009447.1\|WP_005105067.1\|3674441_3675530_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	3.84701e-34
NZ_CP009447.1\|WP_024571189.1\|3660342_3660777_-\|DUF779-domain-containing-protein	gnl\|CDD\|377532	pfam05610, DUF779, Protein of unknown function (DUF779). This family consists of several bacterial proteins of unknown function.	2.92171e-69
NZ_CP009447.1\|WP_005066003.1\|3662353_3662509_-\|hypothetical-protein	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	1.90021e-05
NZ_CP009447.1\|WP_005066001.1\|3662669_3664682_+\|MFS-transporter	gnl\|CDD\|340868	cd06179, MFS_TRI12_like, Fungal trichothecene efflux pump (TRI12) of the Major Facilitator Superfamily of transporters. This family includes Fusarium sporotrichioides trichothecene efflux pump (TRI12), which may play a role in F. sporotrichioides self-protection against trichothecenes. TRI12 belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.71825e-66
NZ_CP009447.1\|WP_005065999.1\|3666616_3667060_-\|SRPBCC-family-protein	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	6.54669e-14
NZ_CP009447.1\|WP_005063546.1\|3660757_3662278_-\|aldehyde-dehydrogenase	gnl\|CDD\|143434	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.	0
NZ_CP009447.1\|WP_005100882.1\|3672582_3673683_-\|hypothetical-protein	gnl\|CDD\|293841	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain. Derepression of the romA-ramA locus results in a multidrug-resistance phenotype. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	4.22158e-68
NZ_CP009447.1\|WP_005102528.1\|3655582_3656788_+\|DNA-polymerase-IV	gnl\|CDD\|179663	PRK03858, PRK03858, DNA polymerase IV; Validated.	0
NZ_CP009447.1\|WP_074232589.1\|3664632_3665229_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|225767	COG3226, COG3226, Uncharacterized protein conserved in bacteria [Function unknown].	7.56192e-08
NZ_CP009447.1\|WP_005102410.1\|3667096_3668233_-\|lipase	gnl\|CDD\|367570	pfam03583, LIP, Secretory lipase. These lipases are expressed and secreted during the infection cycle of these pathogens. In particular, C. albicans has a large number of different lipases, possibly reflecting broad lipolytic activity, which may contribute to the persistence and virulence of C. albicans in human tissue.	5.45097e-17
NZ_CP009447.1\|WP_005065989.1\|3669388_3671791_-\|magnesium-transporting-ATPase	gnl\|CDD\|319795	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7. This subfamily contains P-type ATPase transporters of unknown function, similar to Streptococcus pneumoniae Exp7. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids. They are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle. A general characteristic of P-type ATPases is a bundle of transmembrane helices which make up the transport path, and three domains on the cytoplasmic side of the membrane. Members include pumps that transport various light metal ions, such as H(+), Na(+), K(+), Ca(2+), and Mg(2+), pumps that transport indispensable trace elements, such as Zn(2+) and Cu(2+), pumps that remove toxic heavy metal ions, such as Cd(2+), and pumps such as aminophospholipid translocases which transport phosphatidylserine and phosphatidylethanolamine.	0
NZ_CP009447.1\|WP_005066010.1\|3657722_3658469_+\|peroxide-stress-protein-YaaA	gnl\|CDD\|234999	PRK02101, PRK02101, peroxide stress protein YaaA.	1.51257e-69
NZ_CP009447.1\|WP_005100846.1\|3668525_3669359_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225852	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism].	2.00141e-48

>NZ_CP009447.1|WP_005063550.1|3665287_3666208_+|LLM-class-flavin-dependent-oxidoreductase
MRFSIWGQTNQSWADLLDIAQYADDGTWRAFYAADHFMSHADTAEERTDFHEATALFAALAAATSRIRLAPLVLSMTFRHPAVLANWAATVDHVSQGRFTLGLGAGWQENEHQRYGLELGKPGARVDRFSEGLQVITGLLSEPATTVDGQYYRLAEGICEPKPLQRPLPILIGATQPRMLALTARYAHEWNQWSSPGTFREVSGRLDAAAEKIGRDPATIWRSTQARVIVTDGPQSEARAAETAAASPIPVLYGTAERIAEQMAPWAQEGVDEVILPDHLLGSGSARRDAYDALAQALRPLSNEKG
>NZ_CP009447.1|WP_074232589.1|3664632_3665229_-|TetR-family-transcriptional-regulator
MEEQPRGRRAEVIAAAIEVAGTMGIGGLTYRSVDAAANVPSGTTSNHFRTRDALLLGAILEIEKLRRAFWRALVTEINPTTVSDLVGIGTAYANGAVGAMSTRVRAYMALLMEGWSHPELREPLQRGRDAQIPRTLHLMCKVDPKTPQLHAEIFQDYLTGIIYQQLANPVADFNPRPGIEALLTALVTPPQTPRAAQR
>NZ_CP009447.1|WP_005066001.1|3662669_3664682_+|MFS-transporter
MISVQRRNLIFVAVLLGMLLAALDGTIVATALPTVVADLGDAGHQSWVVTSYLLASTVATAVMGKFGDLFGRRTVFITCIVIFAGGSLLCGMAGSMAMLVGARAIQGLGSGGLMVTATALIGEIIPMRERGRYQGILGAVFGVTTVIGPLLGGLFTDHLGWRWAFYINLPISVVVIMVAAGAIPALAKATRPVIDYWGIVLIGLGASALTLATSWGGTTYPWSSPVIIGLFASSIAAIGTFVWVESRVPEPILPPRLFRDPVFTICCVLSFVVGFAMLGVMTYLPTFMQFVNGVSATVSGLRTLPMVAGMLITSTGTGTLVGRTGRYKRYPVAGTAIMAIALVLLSRMNDSTPFVLQSLYLFILGVGIGASMQVLTLIVQNTARFDDLGVATSGVTFFRTIGSSFGAAIFGSLFSNFLTRELSSVNTPPQATQSPQALHALPHDAAVPVIHAYADSLDLVFLCAAPVAAVGFVLALFLKEVPLRGADTSLAVDMGEGFGMPNSVSPDKLLEIAIGNAMRGFPHVGLRKLREHAGVSMPIAPLWALVQANRFLRATGSAEVSRIAQWYRIPPEIVDPAFNELVANGYALRTNDHIWLTDSGREEVDKISEAINQYLIERLSRTPDFEDRADREQIQAALERISRRIVTDTDWRENPIAALPAASGAASPAR
>NZ_CP009447.1|WP_005066003.1|3662353_3662509_-|hypothetical-protein
MCGYGCLASLPEGASGCTTVELKTNFLGAAREGKLTAAVFRCTQLVLWPRG
>NZ_CP009447.1|WP_005063546.1|3660757_3662278_-|aldehyde-dehydrogenase
MAKYAAPGTEGSAVTFAPRYENFIGGEWVAPADGQYFENASPIDGKVFTQVARGTAPDIEKALDAAHAAAEGWGNTSAAERSNALLRIADRMEQHIERLAVAETWDNGKPIRESLNADIPLAIDHFRYFAGVLRAQEGSISEIDHDTVAYHFHEPLGVVGQIIPWNFPLLMAVWKLAPALAAGNCVVLKPAEQTPASILVLMELIADLLPSGTVNVVNGFGVEAGKPLASSPRIAKIAFTGETTTGRLIMQYATENIIPVTLELGGKSPNIFMPDVMAADDAFLDKALEGFTMFALNQGEVCTCPSRALVHASIYDEFIARAITRVEAIVGGDPLDEDTMIGAQASNDQYEKILSYIDIGRQEGAQVLTGGDARKVAEYPDGAYIQPTVFAGTNNMRIFQEEIFGPVLSVAKFDSLDEALKIANDTLYGLGAGVWSRDMTNAYRLGRGIKAGRVWTNCYHQYPAHAAFGGYKKSGIGRENHKMMLDHYQQTKNILVSYSPDAAGFF
>NZ_CP009447.1|WP_024571189.1|3660342_3660777_-|DUF779-domain-containing-protein
MQRASSDEGSPGESRILINRVELTPAAAELLASLVAKHGPVMFHQSGGCCDGSAPMCYPRGEFRVGASDVLLGEVSRDTPFWMSADQFEYWSHTHLTVDVVPGRGSGFSLEAPEGVRFLIRSRLFTDDEVLALANQPVRTGADG
>NZ_CP009447.1|WP_005102548.1|3658458_3660249_-|hypothetical-protein
MHVGIRTVAVAAVCGLCVGAGVDARAVRPNLSIAGTPTTRSVSSQAVSLASFSDLLAAAAPQNDAAAQMNSVGGGAVSSTDLIGTVAKLLAAPNIMQSSVTPGINTAAVDTVDSPSSEPVDPPTGQPADPPAADEPAPPTNFPGERPAFGTPSYFAQLAFAVFHVVALPITVPVQFFLGSAEGVPTVIAAAINDLSGLLGQIPGLSPQQPTEPQPQQIAQSSSPLQKQAAAETSPTTDPEPPAEPLPTNFPGPRPAFGTPSYFAQLAFAVLHVLALPITVPVQAIIGKTEGVPSVIVAALNDLSSLLGQVPKLSAPVTDTKTTPQDSTSRQADKAAPTLDSASEKPETATSGADAKTSKIERNEHEGKTADKAAEAPKAEHETKPGAASEGTPKTDSAKEVVESKADPTKVVESKADPTKAVEPKADPTKVVEPKVDPAKVVEPKTDPAKAVEPKADTVAEPAKPESSKAEVAKPVTAKPETKVQPAKPESAGPVKVTRDSLKSTPGETGTTGGTKTTEGSKGSVTDSKTPAASTDTKVHDGLKPAVGAKPDKPADKPSTEKSSSEKSGSSSEGSSHSSESKSHSSEGKSHSGSKD
>NZ_CP009447.1|WP_005066010.1|3657722_3658469_+|peroxide-stress-protein-YaaA
MIVLLPPSETKHEGGDGPPLRLNELATPTLNPLREALVDELIALAAEPDACRQALGISASQDAEIQRNAELRISPTMPALHRYTGVLYDNLDVTSLRGASATRARERLAVGSALFGLLRADDPVPAYRLSASSKLPGKPTLAARWRPVLEPVLAELAAGELVVDLRSGSYAGLGRLPHAVTVDCLTEHPDGRRTVITHFNKAHKGKLARILAGSRAEPNDAASVATVARRAGLHVERDGNTLTIVVSP
>NZ_CP009447.1|WP_005063541.1|3656814_3657597_-|VOC-family-protein
MPTRDETPLGAPAWIDLASSDLEKSKAFYSALFGWTLQDAGPEYGGYINAHKDGKAVAGMITNNPEWNAPDAWTTYFATDDIDATLQKAVAHGGTNCLPPMEVPQLGYMALFADPAGAMVGLWQPLAHKGFQLVGEGGAPAWHELNTREYDRAVDFYTTVLGWNTKTEGDSADFRYACAQHDGAPIAGINDASVGQWALPEGVPAHWAVYFGTDDTDAGAAKATELGGVVLAPAQDTPYGRMALIRDTTGATFWLCSVDS
>NZ_CP009447.1|WP_005102528.1|3655582_3656788_+|DNA-polymerase-IV
MTGTASILHADLDSFYASVEQRDTPALRDRPVIVGGGVVLAASYEAKHCGVRTAMGGRQALRLCPHAVVVPPRFDAYSAASKLVFEVFRDTTPLVEPLSIDEAFLDVSGLQRISGAPSDIAAALRVEVRRRAGLPITVGIARTKFLAKVASRQGKPDGLLVVEPHEELSFLRPLPVQALWGVGSVTAEKLRVYGIRTVADVADLGESTLASMVGRAMGHQLHCLANNIDPRRVDGGRRRRSIGAQCALGRGPRADSEIDAIATQLMERIARRMRGTGRSCRTVVLRLRFGDYARATRSRTMPRPTTSTERLLSVARELVKDAGPLIKERGITLIGFSVSNFDPCGAAQLELPFSDAAENTLALDSTLDGLRNRFGTWSVTRANLLHGGGREEWGIPTFEDL
>NZ_CP009447.1|WP_005065999.1|3666616_3667060_-|SRPBCC-family-protein
MAAKLNSSIDVPLPPEEAWAHASDLRRFDEWLSVHTAWRSALPETLEKGTVIDSIVCVKGMYNRVRWTLQKYDPPTGLFLDGQGRGGVKVKLRVTISPKGSGSVVDFNLHLGGPAMFGPIGAVVAAALRSDIDASLAKFVQVFAAAP
>NZ_CP009447.1|WP_005102410.1|3667096_3668233_-|lipase
MLVLITAACARVEAEGVAPQPPSPPPGEVLSDVPLSLAPDLDAIADGHLIRYMSTSGATGTPTEVTGVVFAPKGEPPQAGWPIVSVGHGTTGLDDECAVSRAPDLRGYIWLVRNLSKRGWVVAITDYEGLGVPGPHPYLEPRSEGFNVIDAARAAVSLIPGASTKWAAIGASQGGQATWAASELAGNYASELEFVGSANLSPAADLTDMATHVGDGRYHWSQLSMMPTLLTGLSVTVPELRPENFLHGSFQDIPQDKALLLGCHNGLDPARSAAIGRLRAKDFHGTSPADPIVFAAALKRIALPLGPASGPMFVYAGGADRLIEAGWIHAAVRRACALGDTVQEVVSPGKGHVDPEGERLGVQWIADRFAGLPAPSNC
>NZ_CP009447.1|WP_005063556.1|3668255_3668471_-|antitoxin
MADFKGLIDKLKSLLAGNKDKVNEAVDKVGDTIDSKTGGKYSAVVDKVQDAAKSAVEKVEGAAAPKDGDAQ
>NZ_CP009447.1|WP_005100846.1|3668525_3669359_+|class-I-SAM-dependent-methyltransferase
MLVRVTDPVKITLTGAPETMLATLYGRAQDATSPNSVLHDHYAAEAVARIDYDFSKTKIKGTQAIGVALRARQLDDWTSEFLTAHREATVLHLACGLDTRVFRINPSETVRWVDVDYPDVIALRRALLPCREGDYRMIGSSVSEATWLDSIPADRPTLAVFEGLTMYLTEAEGQSLIRRITGRFPSGQLAFDCYGSIGIKLQKLVPAVRNAGATLHWGIDDPGQIEALHPGLRCVSDLRSTDVAGEEHLPLSGRIQMKVISHLPALRDIGRIMRFSF
>NZ_CP009447.1|WP_005065989.1|3669388_3671791_-|magnesium-transporting-ATPase
MATIEGLTISGLTAAEVAERVAQGKTNDVPSRAARSVSDIVRANVFTRINAILGVLLIIVLSTGSIINGAFGLLIIANSAVGIIQELRAKQTLDKLAIVGQTRPLVRRDGAATALAPNEVVLDDIIELGPGDQIVVDGEVIEESALEIDESLLTGEADAIEKTIGSQVLSGSFVVAGSGAYRATKVGREAYAAKLAEEASKFTLVHSELRNGINKILQFITYLLLPAGALIIYTQLFTTDDSWQESVLRMVGALVPMVPEGLVLMTSIAFAVGVIRLGRRQCLVQELPAIEGLARVDTVCADKTGTLTENGMRLADVRFPDRDGDEDALAVLAQLAADDPRPNASIAAIAEAYDTPPGWETTAIAPFSSAKKWSGASYGDHGNWVIGAPDVLLDPADAIATAAEEIGARGLRVLLLASAELSVDDAHAPGAVTPRALVVLEQKIRPDARETLDYFASQHVSIKVISGDNAVSVSAVAQTLGLTGAAVDARTLPTDTDKLAATLADATTFGRVRPDQKRAMVKALQSHGHTVAMTGDGVNDVLALKDADIGVAMGAGSSASRAVAQIVLLDNKFATLPYVVAEGRRVIGNIERVSNLFLTKTVYSVLLALTVGLAGLGSKILHYGAVPFPFQPIHVTIAAWFTIGIPAFILSLAPNNERAQTGFVRRVMLSAIPSGLTVGIATFLSYLLARQILHVSGNSTQASTAALITELVAAVWVLAVVARPYQWWRVVLVALSGLGYVAIFAIPLARKAFMLDPGNLAVTGPALGIGIAAAAVIEAVWWLQGKWSGQLRHFWATGED
>NZ_CP009447.1|WP_005063559.1|3671908_3672586_+|class-I-SAM-dependent-methyltransferase
MTSNELPDWDATYQGKGELFQGEPPWNIGEPQPELAALIDAGKFHGTVLDVGCGHAETSLRLAALGHTTVGLDLSPTAIEAARAAAAERGLTNATFEVADITDFSGYDGRFNTIVDSTLFHSIPVEAREAYLQSISRAAAPDASYFVLVFAVGAFPPGIGPNAVTEDELRAAVEPYWAIDELSSAYIHSNIPEVIPGANFEMPVFHKDEKGRNKQPAFLLQAHKR
>NZ_CP009447.1|WP_005100882.1|3672582_3673683_-|hypothetical-protein
MRALWVGAGAAIASTWIGRALRDVPQTLGASKGRIAEVAKGSPQYRGGTFHNAEPARQFSPDAETTTVVWDVLTRRSVGTPKGQVPLAVPEFAGPPADLAATWFGHSSVLVEIDGYRVLTDPVWSDRCSPSRVVGPHRQHPVPLELSALPALDAVVISHDHYDHLDMDSIIALTRSQNAVFVVPLGVGAHLRGWGVSPARVIELDWDQSHQLGKLTLTCTQARHFSGRSIARNTTLWASWAFAGPKHKVFFGGDTGYTKAFKVIGDTYGPFDLTLLPVGAYNTSWADIHMNPEEAVQTHLDLATAQAPLLPIHWATFNLALHPWAEPIERVLAAAEEQGVTVVTPRPGQRADARQPAAPDDWWRLS
>NZ_CP009447.1|WP_005063562.1|3673685_3674417_-|enoyl-CoA-hydratase
MIGVTSDGPVTTIELQRPERRNAVTYELALAFAEEVKKAAETARAIVVTGQGTSFCAGADLSSGAPDPDKFADAWQHSIKSVDAADIPVIAAVNGPAIGAGVMLAMVADLRVVSETARFQFPVAKYGIALDNWSIRRLTSLVGYGRARAMLLAAEPLDAQTALQTGMANRIGELADAQAWAAELAGFAPLALKHAKRVLNDDGAFEDQWPEHKELFDKAWGSQDIIEAQVARIQKRPPNFQGA
>NZ_CP009447.1|WP_005105067.1|3674441_3675530_+|NAD(P)/FAD-dependent-oxidoreductase
MTTVAVIGGGQAGIAAGYFLRRRGLEPLSRRQPADAPGHGFVILDHSPGPGGAWQFRWPTLTLDNTNRIYQLPGLPFDEMGTIRASTTMPRYFGEYEDRYALDVRRPVHVRAVRPARGGFTIDTSVGEFPVDGLINATGTWDKPFVPFVPGAGTFRGRQLHTHDYQRPEEFTGQHVLVVGGGISAVQLLIEIAGIDSVTTSWVTRREPVFVTDLTVDRLRAAVAGVDERSRRGEPQRSVVSATGLPWTAETAEAARRGILTRRPMFSRITPTGVTWPDGSALEVDVILWCTGFRHALDHLAPLHLRNGRGGITMTGRLLTQVAGQPAIHLLGYGSSASTIGANRASRAAVVELMNYLEGRTA
>NZ_CP009447.1|WP_005063565.1|3675509_3676091_-|hypothetical-protein
MCAALGVGLLSGGAAVAHADPAFPDLSGFAVVPPDGFFVTNENSSVRSIHFSTPDGIGCMFRASPNMTPTSRQRLSCDGAVPGIPGDAPNAPNVPGIGGASANVPGLGGVNIPGVGTCPMGTVAQKGDGAFEISKGAWSCGTKPEAPLLNVGQKLTYGNVTCAVGAGSVTACQVVTGDQKHGFVLQPSGSTSF

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Crispr_ID: NZ_CP009447_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009447_5

4464142-4464243

Orphan

Consensus_repeat	Method
GGATACGGCGCCCCGCCGCAAGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009447_5

>merge|NZ_CP009447|5|4464142-4464243|CRISPRCasFinder
GGATACGGCGCCCCGCCGCAAGCACCGCAGGGCGGCGGCGACTACGGACGTCCGCCCGCCCCGCCGCAGCAGGGTGGCGGATACGGCGCCCCGCCGCAGCAG

>NZ_CP009447|5|5|4464142-4464243|CRISPRCasFinder
GGATACGGCGCCCCGCCGCAAGCA	CCGCAGGGCGGCGGCGACTACGGACGTCCGCCCGCCCCGCCGCAGCAGGGTGGC
GGATACGGCGCCCCGCCGCAGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009447.1\|WP_005101631.1\|4460383_4460821_-\|DUF350-domain-containing-protein	unknown	unknown	gnl\|CDD\|377187
NZ_CP009447.1\|WP_005072156.1\|4475129_4475555_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371225
NZ_CP009447.1\|WP_032688067.1\|4462025_4462640_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377691
NZ_CP009447.1\|WP_005062633.1\|4456448_4456739_-\|WXG100-family-type-VII-secretion-target	unknown	unknown	gnl\|CDD\|227179
NZ_CP009447.1\|WP_005100579.1\|4458659_4458968_-\|PE-family-protein	unknown	unknown	gnl\|CDD\|376422
NZ_CP009447.1\|WP_005100458.1\|4459392_4459980_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP009447.1\|WP_005072155.1\|4475613_4476513_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|272862
NZ_CP009447.1\|WP_005064886.1\|4456762_4457056_-\|type-VII-secretion-system-protein-EsxS	unknown	unknown	unknown
NZ_CP009447.1\|WP_005072173.1\|4457121_4458654_-\|PPE-family-protein	unknown	unknown	gnl\|CDD\|366325
NZ_CP009447.1\|WP_005103281.1\|4454853_4455900_-\|diiron-oxygenase	unknown	unknown	gnl\|CDD\|378680
NZ_CP009447.1\|WP_005072164.1\|4471170_4473057_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP009447.1\|WP_005064465.1\|4473795_4474512_-\|DUF881-domain-containing-protein	unknown	unknown	gnl\|CDD\|377575
NZ_CP009447.1\|WP_005082859.1\|4474711_4474975_+\|cell-division-protein-CrgA	unknown	unknown	gnl\|CDD\|178907
NZ_CP009447.1\|WP_005102494.1\|4460859_4462026_-\|glutathionylspermidine-synthase-family-protein	unknown	unknown	gnl\|CDD\|367631
NZ_CP009447.1\|WP_005064443.1\|4464981_4465446_+\|membrane-protein	unknown	unknown	gnl\|CDD\|224630
NZ_CP009447.1\|WP_016890714.1\|4466944_4468402_+\|FtsW/RodA/SpoVE-family-cell-cycle-protein	unknown	unknown	gnl\|CDD\|223843
NZ_CP009447.1\|WP_005103085.1\|4465442_4466948_+\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|223704
NZ_CP009447.1\|WP_005064460.1\|4473063_4473738_-\|aminodeoxychorismate/anthranilate-synthase-component-II	unknown	unknown	gnl\|CDD\|181107
NZ_CP009447.1\|WP_005065095.1\|4456046_4456382_+\|DUF4873-domain-containing-protein	unknown	unknown	gnl\|CDD\|374407
NZ_CP009447.1\|WP_005101269.1\|4468398_4469913_+\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|223839

Protein	Function_ID	Function_description	E-value
NZ_CP009447.1\|WP_005101631.1\|4460383_4460821_-\|DUF350-domain-containing-protein	gnl\|CDD\|377187	pfam03994, DUF350, Domain of Unknown Function (DUF350). This domain occurs in a small set of of bacterial proteins. It has two transmembrane regions, and often occurs as tandem repeats. The are no conserved catalytic residues.	1.15095e-06
NZ_CP009447.1\|WP_005072156.1\|4475129_4475555_+\|hypothetical-protein	gnl\|CDD\|371225	pfam10756, bPH_6, Bacterial PH domain. This domain has a bacterial type PH domain structure. This domain was previously known as DUF2581. This family is conserved in the Actinomycetales. Although several members are annotated as RbiX homologs, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed.	1.09832e-05
NZ_CP009447.1\|WP_032688067.1\|4462025_4462640_-\|hypothetical-protein	gnl\|CDD\|377691	pfam06693, DUF1190, Protein of unknown function (DUF1190). This family consists of several hypothetical Enterobacterial proteins of around 212 residues in length and is known as YjfM in Escherichia coli. The function of this family is unknown.	0.00046615
NZ_CP009447.1\|WP_005062633.1\|4456448_4456739_-\|WXG100-family-type-VII-secretion-target	gnl\|CDD\|227179	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown].	8.73074e-14
NZ_CP009447.1\|WP_005100579.1\|4458659_4458968_-\|PE-family-protein	gnl\|CDD\|376422	pfam00934, PE, PE family. This family named after a PE motif near to the amino terminus of the domain. The PE family of proteins all contain an amino-terminal region of about 110 amino acids. The carboxyl terminus of this family are variable and fall into several classes. The largest class of PE proteins is the highly repetitive PGRS class which have a high glycine content. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	6.96584e-11
NZ_CP009447.1\|WP_005100458.1\|4459392_4459980_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.12013e-09
NZ_CP009447.1\|WP_005072155.1\|4475613_4476513_+\|SAM-dependent-methyltransferase	gnl\|CDD\|272862	TIGR00027, Hypothetical_protein_Rv0893c/MT0917/Mb0917c., methyltransferase, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. [Unknown function, Enzymes of unknown specificity].	2.07769e-85
NZ_CP009447.1\|WP_005072173.1\|4457121_4458654_-\|PPE-family-protein	gnl\|CDD\|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	3.58533e-55
NZ_CP009447.1\|WP_005103281.1\|4454853_4455900_-\|diiron-oxygenase	gnl\|CDD\|378680	pfam11583, AurF, P-aminobenzoate N-oxygenase AurF. This family is a metalloenzyme which is involved in the biosynthesis of antibiotic aureothin by catalyzing the formation of p-nitrobenzoic acid from p-aminobenzoic acid. AurF is a non-heme di-iron monooxygenase which creates nitroarenes via the sequential oxidation of aminoarenes.	2.21959e-81
NZ_CP009447.1\|WP_005072164.1\|4471170_4473057_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	4.36841e-132
NZ_CP009447.1\|WP_005064465.1\|4473795_4474512_-\|DUF881-domain-containing-protein	gnl\|CDD\|377575	pfam05949, DUF881, Bacterial protein of unknown function (DUF881). This family consists of a series of hypothetical bacterial proteins. One of the family members YlxW from Bacillus subtilis is thought to be involved in cell division and sporulation.	4.93408e-50
NZ_CP009447.1\|WP_005082859.1\|4474711_4474975_+\|cell-division-protein-CrgA	gnl\|CDD\|178907	PRK00159, PRK00159, putative septation inhibitor protein; Reviewed.	3.12372e-47
NZ_CP009447.1\|WP_005102494.1\|4460859_4462026_-\|glutathionylspermidine-synthase-family-protein	gnl\|CDD\|367631	pfam03738, GSP_synth, Glutathionylspermidine synthase preATP-grasp. This region contains the Glutathionylspermidine synthase enzymatic activity EC:6.3.1.8. This is the C-terminal region in bi-enzymes. Glutathionylspermidine (GSP) synthetases of Trypanosomatidae and Escherichia coli couple hydrolysis of ATP (to ADP and Pi) with formation of an amide bond between spermidine and the glycine carboxylate of glutathione (gamma-Glu-Cys-Gly). In the pathogenic trypanosomatids, this reaction is the penultimate step in the biosynthesis of the antioxidant metabolite, trypanothione (N1,N8-bis-(glutathionyl)spermidine), and is a target for drug design. This region, the pre-ATP grasp region, probably carries the substrate-binding site.	0
NZ_CP009447.1\|WP_005064443.1\|4464981_4465446_+\|membrane-protein	gnl\|CDD\|224630	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms].	1.0405e-25
NZ_CP009447.1\|WP_016890714.1\|4466944_4468402_+\|FtsW/RodA/SpoVE-family-cell-cycle-protein	gnl\|CDD\|223843	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning].	8.29761e-96
NZ_CP009447.1\|WP_005103085.1\|4465442_4466948_+\|serine/threonine-protein-phosphatase	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	1.57663e-79
NZ_CP009447.1\|WP_005064460.1\|4473063_4473738_-\|aminodeoxychorismate/anthranilate-synthase-component-II	gnl\|CDD\|181107	PRK07765, PRK07765, aminodeoxychorismate/anthranilate synthase component II.	1.16439e-150
NZ_CP009447.1\|WP_005065095.1\|4456046_4456382_+\|DUF4873-domain-containing-protein	gnl\|CDD\|374407	pfam16170, DUF4873, Domain of unknown function (DUF4873). This family consists mostly of short uncharacterized proteins found in various high GC Gram positive bacteria, primarily Mycobacterium species. However in some proteins, such as for instance Rv0943c proteins from Mycobacterium tuberculosis H37Rv, DUF4873 domain is found at the C-terminus, following the flavin-binding monooxygenase-like domain pfam00743, which is why probably many proteins with DUF4873 domains are annotated as monooxygenases. However these functions are not confirmed experimentally and the function of DUF4873 domain is still unknown.	1.01206e-34
NZ_CP009447.1\|WP_005101269.1\|4468398_4469913_+\|penicillin-binding-protein-2	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	2.68818e-93

>NZ_CP009447.1|WP_032688067.1|4462025_4462640_-|hypothetical-protein
MPDPLSDGPDTGRPDVPPGRGAMRWQEPGITLPRPPTVAEARARDKAQRAREAAQRLAEVQAQKAEERRRTRNKVLMGSAVVAGIAAVVAVGYAVIDRDDDVEATCVQQGSNVVAPEEYCERGTPSSGGTFIYAGSPYQYYYGGQNRGIGTVATGGSLELPRGTTARTSSGTRISKSDGSGSVSRSPSVSRGGFGSSSSGSSGS
>NZ_CP009447.1|WP_005102494.1|4460859_4462026_-|glutathionylspermidine-synthase-family-protein
MRRERGRPRPGWEQTVASQGMCYGTPARMADGSDRPYWDESVHYVFDMNEVLSLEATVEVLHSMCLEAVERVVLLGRYHDFGLPEWTWEHIEKSWRRSDPHLYGRFDLRYDGQRPPVLLEYNADTPTSLLEAAILQWHWKTDAFPDDDQWNSLHEQLVARWKHIGGQLTGAETHFTWSSADQTGEDHVTLAYLQECAAEAGLNTVGLPIEQIGWDHDLNRLVDLEEAPIESIFKLYPWEWMIDDDFGRHAVDLLPETLWIEPLWKTLLSNKAILAILWEMYPGHPNLLPAYLDSPRELTEYVRKPKLGREGANITVVGAGFETATGGVYGEEGFVYQLLDPLPRFDGMRPVLGAWIVGDESAGLGIRETAGLITDDGAAFVPHRIPLS
>NZ_CP009447.1|WP_005101631.1|4460383_4460821_-|DUF350-domain-containing-protein
MNTAGYWSIVAHGAAAIWLYAAVGFVLMTLGFFVLDWTTPGPLRQMVRAGLPNAAVIAAAGLLSQAFVIVLAIYTASGNIAEGLIRTLVFGLIGIAAQTICIRLIEWVMGVDVGKLLAHRRFASATLVVGAAYLAVGLVIATAIL
>NZ_CP009447.1|WP_005100458.1|4459392_4459980_-|TetR/AcrR-family-transcriptional-regulator
MPRQEREQWILTAAAAEFGESTFAGSSMNGIAARAEVSKALVLAYFGSKEDLYVACVERAGERMATAIGGALSGETARAEVAEAVLTAIFIALEDRPSDWPVLYDRTVPDGRARDAARRQRTILRAQAVAAVTRTLGAVGLSDDDDLSAATLVWESMVSALVDWWRHHPERSADEMAGRARRVLAALSDRATDGR
>NZ_CP009447.1|WP_005100579.1|4458659_4458968_-|PE-family-protein
MNLNVVPEGLIATSAAVEALTARLAAAHAAAAPVIGAVVPPAADPVSLETAAGFSARGIEHSGVAAQAVEELGRAGLGVSQSAASYTTGDMQAAAAYMIARG
>NZ_CP009447.1|WP_005072173.1|4457121_4458654_-|PPE-family-protein
MSAPIWMASPPEVHSALLSAGPGPGALLAAAAQWQALSTQYATAATELTELLGSTVAGSWQGPSAMQYAASHAPYLAWLTQQSAMSATNAVLHETSAAAYTTALAAMPTLAELAANHMIHGVLLATNFFGINTIPIALNEADYIRMWIQAATTMGVYQGVSSAALAATTPTQPSPMIMAPGGEMSRMSADMMSMAAQPQAAESGSALDSSNNIMDQLMRFMTNPLGTLQDMIEDFMRNPVAAFFAWFPLLFFIAYEAFFIPFGFTFWGVLLSAPAWLPIVLGLALSALVPPAGIEEPGQEDEPGREPARIERRSPQQDLQLAHVPSGSPTPGGSTTTTVTSGGSAPPAPAPAAVTPAYMVYAVQEDPPAARFGPTLNEGSGAKAPAAGSAAAAAAAASSRSRARRKRAARIKDPAPQFMDMNSSVAPDFSESAARQTTGVGASARGAGRLGFVGTAPAAAGTTAAAGLVERDSSTAEAWDGARTVPMLPTSWGTDSEHGPDRPAEGGFST
>NZ_CP009447.1|WP_005064886.1|4456762_4457056_-|type-VII-secretion-system-protein-EsxS
MSLLDAHIPALVAAEGTFGAKTALMRSTISQAESAALSAQAFHVGESSVAFQAAHARFVEVAAKVNALLDIAQVNLGDAAATYVAEDAAAASRYVGV
>NZ_CP009447.1|WP_005062633.1|4456448_4456739_-|WXG100-family-type-VII-secretion-target
MSQITFNYPAMLAHAGEMNTYSGVLTALGADLAAQQASLQAAWHGDTSMSQAAWQAQWNTAMEELIRAYRAMGSTHETNTLSMNARDMAEGAKWGA
>NZ_CP009447.1|WP_005065095.1|4456046_4456382_+|DUF4873-domain-containing-protein
MRLTDDSAHMDDAVDYCGPATLVIEGEEFETRVRLRGFFQPIDGTYRWHGRTDSGTRSLARFGRDRASGAIRTAHGQAAVIIDEIDLWGRYRLRGSGRPPFPPAGLPHDRD
>NZ_CP009447.1|WP_005103281.1|4454853_4455900_-|diiron-oxygenase
MGVEVRSQRGEVRTRADADPQRALERRLKASAEKYYDPEIDIDWEAPIDPARPWLSPHRVALEGTELWESLTREQRLEFGRQQLGSILILGIWFETALAVFLYHDLMVSPVTGGRSRYLLTEIGEETRHSTMFARLVEKMGEDATAMEFRVPRFARGAVPFFSSLVPVGPAMYTAVLMAEEVLDRLQREGMNDPALQPHARAAMRIHVIEETRHVSFAKDEIVRGYRDAGPVGRFLTRVAAGGAALVFPALGLANPRMYRAIGVNPVAGMLTGFLARRYGENARFLFAPMARFFYDAGIIKGIPATILWRLSRALPEDVKAQLGRDGGLRGRRAHLSLVRPASNVHQA
>NZ_CP009447.1|WP_005064443.1|4464981_4465446_+|membrane-protein
MQGLVLQLTRGGFLLLLWVFIWSVLRILRTDIYAPTGQLMANRGLNLRSIRPAKTNRRQMQYLLVTEGALAGTRITLGTQPILIGRADDSTLVLTDDYSSTRHARLSPRGSDWYVEDLGSTNGTYLDREKVTTALRVPQGTPVRIGKTVIELRS
>NZ_CP009447.1|WP_005103085.1|4465442_4466948_+|serine/threonine-protein-phosphatase
MTLVLRYAARSDRGLVRSNNEDSVYAGARLLALADGMGGHAAGEVASQLVIAALAPLDDDEPGGDLLDALADAVHAGNGAIADHVRAEPELDGMGTTLTAFLFAGKRLGMVHIGDSRAYLMRDGELTQISKDDTFVQTLVDEGRITPEQAHNHPQRSLIMRALTGAPVEPTLIMREAHAGDRYLLCSDGLSDPVSHETIAEALEIPDVSAAADRLIELALRSGGPDNVTVVVADVVELDYGQTRPIVAGAVSTDADTDTPPPNTAAGRAAAIQRALKEPEPAEDESDSETTESENSKPRKRRLRWLIAAVLVVLIALAGLAIARRVVLNNYYVSAHEGNVSIMQGVQGSLLGYRLQRPDLVGCLDSRGDMSLVSYGEAASNLSCKYLKVSDLRPSERQQVETGLPGGTLDEAIGQLRQLSKNALPPCPPPAPKIPPPPAPTAAGRTPATTSGTPTTTPSKPSPTTSASPGASTTPTTTSTPAPAPLPAPPQEPGVTCRTVS
>NZ_CP009447.1|WP_016890714.1|4466944_4468402_+|FtsW/RodA/SpoVE-family-cell-cycle-protein
MTTAPQTAVGPSGRGSGAVSAPPTQSTRRSAELGLLGFAAAITTVALVLVEANLERGLSWDLLGYGFAYLVLFVLAHMAVRRWAPYADPLLLPCVALLNGLGLVMIHRLDLVHSYNDGDTDQVGDNNATQQMLWTMVGLIALAAVLATLKDHRVLARYGYTFGIVGCVLLAIPALLPTSMSEQYGAKIWIELPFLSIQPAEAAKILLLIFFAAFLMTKRTLFRTAGRNYLGIELPRPRDLGPLLAIWGISVGVMVFEKDLGASLLFYSSFLIVLYVATARISWVLIGLALFAAGSVIAYFLFGHVRVRVQNWWDPFTDPDGAGYQMVQSLFSFATGGIFGTGLGNGQPGTVPAASTDFIIAAVGEELGLVGLAGVLMLYTIVIIRGFRTALAVRDSFGKLLAVGLSAALAMQLFIVVGGVTKLIPQTGLTTPWMSYGGSSLIANYVLLAILLRISHIARRPLSPHASSSPAAPLAEARTELIDRV
>NZ_CP009447.1|WP_005101269.1|4468398_4469913_+|penicillin-binding-protein-2
MNTSIRRVSLAVMGLVVLLLANATITQVFTAPGLRADPRNQRILLDEYSRQRGQISASGQLLASSVATDSRFRFLRQYADPEVYAPVTGFYSLNYSSTGLERAEDTMLNGSDPRLFGRRLADFFTGRDPRGGSVVTTIRPDVQQAAYDAMHRGCKDGCRGAVVALEPSTGKILAMVSTPSYDPNLLASQDPEKENAAWKRLTEDPAQPMLNRAIAQTYPPGSTFKVITTAAALADGKTVNTEVTASPTIFLPGSNATLENYNRASCGGGDTTSLKEAFARSCNTAFAKLGAEQLKRDKLVKAAQAFGLDRELDSIPLQVATSTVGPMSDDAAVAMSSIGQKDVAMTPLQNAMVAAAVANKGVLMQPHLVDSLKGPDLSNLSTTTPDDIGQAVTPAIANTLTELMIASEQRTAQAGALPGVQIASKTGTAEHGTDPRNTPPHAWYIAFAPAQDTTTDPQATAVTPKVAIAVLVEDGGDRALAATGGSVAAPIGRQVIAAALQGAS
>NZ_CP009447.1|WP_005072164.1|4471170_4473057_+|serine/threonine-protein-kinase
MTTPQHLSDRYELGEILGYGGMSEVHLARDLRLNRDVAIKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETATGPLPYIVMEYVDGITLRDIVKDDGPMPIRRAIEVIADSCQALNFSHQHGIIHRDVKPANIMISKTGAVKVMDFGIARAVSDAGNSVTQTAAVIGTAQYLSPEQARGETVDARSDVYSLGCVLYELLTGEPPFVGDSPVAVAYQHVREDPVAPSKHNPEIPPGLDSVVLKALSKNPDNRYQNAAEMRADLMRVYQGEQPEAPKVLTDAERSTMLSTPANTRAFPASGPQTGPLPSQYEEPRRNPLSRWLVGLAALVVLTIIVTFAIILGNGPSRDVQVPDVTGKSQSDAVAALQNLGFKTKVQKNTSSKVAPEKVIDTDPAKGSTVSAGAEVTVNVSIGPENQQVPDCHGLSFGDAVKKLQAAGFKGTFTQSETKSLPEDKGRVMATNPPAGQYSAVTNNITIVVGKGPGEKPVPDLGGQNIDVAIKNLPTYGFTAPPTVIPVPSPESKGQILSTNPPANTMFPEDGVIEIRVSNGGQFRMPNIMGKFWTDAEPMLYQAGWQGGGLSTEDVPSDGNNRARVVFQDPPAGAGVGYNGPIKLRFGAG
>NZ_CP009447.1|WP_005064460.1|4473063_4473738_-|aminodeoxychorismate/anthranilate-synthase-component-II
MRILVVDNYDSFVFNLVQYLGQLGVDATVWRNDDPRLADTDAVAADFDGVLISPGPGTPESAGASIAMVHSCAKTGTPLLGVCLGHQAIGVAFGGTVDRAPELLHGKTSTVEHEDAGVLRGLPNPFTATRYHSLTILPDTVPEGLRVIARTASGVIMGVMHTEHPIHGVQFHPESILTEGGHRMLANWLTYCGAPLDEPLVRSLEAEVAAALNGVTGRVAALGG
>NZ_CP009447.1|WP_005064465.1|4473795_4474512_-|DUF881-domain-containing-protein
MPLVCALAGFLLAATHTVSGGSEIRRGDSPSPRLVDLVRETQKSVDKLSGTRDGLANEMAAAREQSAGGDSQVAAALAETAEVADAAGVRPVTGPGLVVTLTDAKRDAYGRFPRDASPDDLVVHQQDVEGVLNALWSAGAEAIQMQDDQRLVASSVPRCVGNTLLLHGRTYSPPYVITAIGDADAMQAALDAAPLVTLYRQYVARFGLGYTVTRGHHLEVAGYRDAVGPGRAVPLQGH
>NZ_CP009447.1|WP_005082859.1|4474711_4474975_+|cell-division-protein-CrgA
MPKSKVRKKSAFNATTVSRTPVKVKAGPSSVWFVAFFLTLMLIGLAWLMVFQLAAQHITWMLDLGPWNYAIAFAFMITGLLLTMRWR
>NZ_CP009447.1|WP_005072156.1|4475129_4475555_+|hypothetical-protein
MDNSTPPPREWGPKPAGILAVALLGIALGVASALFVTDAPGRLLAALAALGLLIFAAVSWRCRPKLRLADDGLQMQGLTRHTLLPRTAVDSVKVTEFRRLGRRTRLLEIESGDRLIVLNRWDLGTDPRDVYEALRAARYPA
>NZ_CP009447.1|WP_005072155.1|4475613_4476513_+|SAM-dependent-methyltransferase
MTRTDGDQWDIVSSVGFTALMVSSFRALETTRTEPLIRDEYARAFVEASGEPRLTEALAAGTPESEWDTATVYLVNHLAVRTKYFDEFFAAATGSGIQQVVILAAGLDSRVYRLPWPDGTVVYELDQPKVLEFKDHVLREEHAVPLAERREVAVDLRDDWIAALRAAGFDATKPTAWLAEGLLAYLPGAAQDALFENITAHSAPGSFLATEWRRRQATAGQWQDAVNKLKPEFIKDISIGSLIYDDERQDPIEWLREHGWQVDTANRLEQAAAYGRPAPSEHSDVTSLWSDAYFITATR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009447_4	4.1\|3666276\|26\|NZ_CP009447\|CRISPRCasFinder	3666276-3666301	26	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	418376-418401	5	0.808
NZ_CP009447_4	4.1\|3666276\|26\|NZ_CP009447\|CRISPRCasFinder	3666276-3666301	26	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	678153-678178	5	0.808
NZ_CP009447_4	4.1\|3666276\|26\|NZ_CP009447\|CRISPRCasFinder	3666276-3666301	26	NZ_CP029333	Mycobacterium avium subsp. hominissuis strain MAC109 plasmid pMAC109a, complete sequence	54049-54074	6	0.769
NZ_CP009447_4	4.1\|3666276\|26\|NZ_CP009447\|CRISPRCasFinder	3666276-3666301	26	NC_022654	Mycobacterium kansasii ATCC 12478 plasmid pMK12478, complete sequence	143457-143482	6	0.769

1. spacer 4.1|3666276|26|NZ_CP009447|CRISPRCasFinder matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 5, identity: 0.808

tggccccaaccaccctggccggggtt	CRISPR spacer
ccgccgcgaccaccctggccggggtc	Protospacer
. *** *.*****************.

2. spacer 4.1|3666276|26|NZ_CP009447|CRISPRCasFinder matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 5, identity: 0.808

tggccccaaccaccctggccggggtt	CRISPR spacer
ccgccgcgaccaccctggccggggtc	Protospacer
. *** *.*****************.

3. spacer 4.1|3666276|26|NZ_CP009447|CRISPRCasFinder matches to NZ_CP029333 (Mycobacterium avium subsp. hominissuis strain MAC109 plasmid pMAC109a, complete sequence) position: , mismatch: 6, identity: 0.769

tggccccaaccaccctggccggggtt	CRISPR spacer
gtgccccaaccaccctcgccgggcaa	Protospacer
  ************** ******

4. spacer 4.1|3666276|26|NZ_CP009447|CRISPRCasFinder matches to NC_022654 (Mycobacterium kansasii ATCC 12478 plasmid pMK12478, complete sequence) position: , mismatch: 6, identity: 0.769

tggccccaaccaccctggccggggtt	CRISPR spacer
gtgccccaaccaccctcgccgggcaa	Protospacer
  ************** ******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

62208 : 75334

Mycobacterium_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005100329.1\|62208_64833_+	replicative DNA helicase	A0A1B0VG30	Salmonella_phage	2.7e-26	33.5
WP_005099936.1\|65526_65727_+	hypothetical protein	NA	NA	NA	NA
WP_005064633.1\|65754_66567_-	membrane protein	NA	NA	NA	NA
WP_005104436.1\|66962_67640_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	7.6e-26	31.4
WP_005101843.1\|67719_69171_-	sensor histidine kinase	Q8QKV4	Ectocarpus_siliculosus_virus	2.9e-06	33.6
WP_005100873.1\|69191_69641_-	hypothetical protein	NA	NA	NA	NA
WP_005101057.1\|69932_70235_+	tetratricopeptide repeat-containing protein	NA	NA	NA	NA
WP_005100934.1\|70401_71250_-	N-acetylmuramoyl-L-alanine amidase	A0A2D1GEV9	Mycobacterium_phage	3.6e-65	55.6
WP_016893138.1\|71679_72876_+	hypothetical protein	A0A1W6JL93	Lactococcus_phage	2.6e-05	47.3
WP_005082750.1\|72924_73737_-	twin-arginine translocation pathway	A0A2D1GEF2	Gordonia_phage	3.1e-50	49.1
WP_005103079.1\|73864_75334_-	hypothetical protein	A0A1J0GRK9	Mycobacterium_phage	9.4e-13	28.5

DBSCAN-SWA_2

761134 : 770633

Shahe_endorna-like_virus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005062166.1\|761134_762001_-	glucose-1-phosphate thymidylyltransferase	H9NC64	Sphingomonas_phage	2.8e-89	57.5
WP_005062164.1\|762144_762324_+	hypothetical protein	NA	NA	NA	NA
WP_005062163.1\|762403_763726_+	glycosyltransferase	A0A1L3KK54	Shahe_endorna-like_virus	1.7e-05	39.2
WP_005102102.1\|763889_764951_+	NAD-dependent dehydratase	A0A0E3IB24	Synechococcus_phage	1.6e-17	25.8
WP_005062160.1\|765118_766252_+	acyltransferase	A9YX16	Burkholderia_phage	1.2e-15	26.4
WP_005138043.1\|766484_767177_+	class I SAM-dependent methyltransferase	Q98VI8	Paramecium_bursaria_Chlorella_virus	3.7e-12	30.2
WP_012296730.1\|767387_768194_+	macrocin O-methyltransferase	A0A2R8FDY2	Brazilian_cedratvirus	4.9e-56	52.6
WP_005062156.1\|768243_769512_+	glycosyltransferase	A0A1L3KK54	Shahe_endorna-like_virus	3.3e-06	40.3
WP_005062155.1\|769508_770633_+	acyltransferase	A9YX16	Burkholderia_phage	7.1e-21	29.0

DBSCAN-SWA_3

1948677 : 1957236

uncultured_Mediterranean_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032687644.1\|1948677_1949952_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.5e-22	28.6
WP_005101033.1\|1949951_1951628_+	hypothetical protein	NA	NA	NA	NA
WP_005099963.1\|1951624_1952158_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.4e-14	36.4
WP_005068903.1\|1952188_1954555_+	RelA/SpoT family protein	A0A291L9W9	Bordetella_phage	1.8e-13	38.4
WP_032687642.1\|1954656_1955526_-	class A beta-lactamase	A0A1B0VBP7	Salmonella_phage	3.4e-55	46.0
WP_005057567.1\|1955527_1956451_-	peptidylprolyl isomerase	A0A1V0SCU1	Indivirus	1.1e-08	31.6
WP_005068898.1\|1956564_1957236_+	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	4.9e-17	31.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009447

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection