CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009449	Mycobacterium bovis strain ATCC BAA-935, complete genome	12 crisprs	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	3	19	0	0

1. NZ_CP009449

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009449_1

• CRISPR_ID: NZ_CP009449_1
• CRISPR_location: 338676-338900
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_CP009449_1

Consensus_repeat	Method
CCGCCGTTGCCGCCGGCCCCGCCGGCGCCGCCGGTCGCGCCG	PILER-CR

spacers of NZ_CP009449_1

>1.1|338718|52|NZ_CP009449|PILER-CR
AAGGCGGCTGCGAATCCGCCGGGACCGCCGACCCCGGCGGCCCCGAACAGCA
>1.2|338812|60|NZ_CP009449|PILER-CR
CCCGTGCTGGCCCTCCCGCCGGCGCCGCCGGCGCCGCCGTTGCCGATGAGCCCGCCGGCG

CRISPR arrays and Neighbor proteins around NZ_CP009449_1

CRISPR arrays

The CRISPR arrays of NZ_CP009449_1

>merge|NZ_CP009449|1|338676-338900|PILER-CR
CCGCCGTTTCCGCCGGCCCCGCCGGCGCCGCCGGTGGCGCCGAAGGCGGCTGCGAATCCGCCGGGACCGCCGACCCCGGCGGCCCCGAACAGCATGCCGGCGGCCCCGCCGGCGCCGCCGGTCCCCGTGCTGGCCCTCCCGCCGGCGCCGCCGGCGCCGCCGTTGCCGATGAGCCCGCCGGCGCCGCCGTTGCCGCCGGCCCCGCCGTTGACGCCGGCCGCGCCG

>NZ_CP009449|1|1|338676-338900|PILER-CR
CCGCCGTTTCCGCCGGCCCCGCCGGCGCCGCCGGTGGCGCCG	AAGGCGGCTGCGAATCCGCCGGGACCGCCGACCCCGGCGGCCCCGAACAGCA
TGCCGGCGGCCCCGCCGGCGCCGCCGGTCCCCGTGCTGGCCC	TCCCGCCGGCGCCGCCGGCGCCGCCGTTGCCGATGAGCCCGCCGGCGCCGCCGTTGCCGC
CGGCCCCGCCGTTGACGCCGGCCGCGCCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009449.1|WP_010950370.1|326427_327561_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|378820
NZ_CP009449.1|WP_003401448.1|341255_342164_+|SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|225852
NZ_CP009449.1|WP_003902925.1|328785_329511_-|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224228
NZ_CP009449.1|WP_003401463.1|342387_344283_+|type-VII-secretion-system-ESX-3-AAA-family-ATPase-EccA3	unknown	unknown	gnl|CDD|188437
NZ_CP009449.1|WP_003899884.1|322419_324102_+|acyl-CoA-synthetase	unknown	unknown	gnl|CDD|236097
NZ_CP009449.1|WP_003401392.1|324118_326314_-|acyl-CoA-dehydrogenase	unknown	unknown	gnl|CDD|173841
NZ_CP009449.1|WP_003401397.1|327557_328178_-|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224228
NZ_CP009449.1|WP_003401514.1|352105_352396_+|ESAT-6-like-protein-EsxH	unknown	unknown	gnl|CDD|227179
NZ_CP009449.1|WP_010950374.1|339621_341232_+|PPE-family-protein	unknown	unknown	gnl|CDD|227938
NZ_CP009449.1|WP_003401404.1|329600_330521_+|DUF2236-domain-containing-protein	unknown	unknown	gnl|CDD|226188
NZ_CP009449.1|WP_003401503.1|351782_352076_+|type-VII-secretion-system-protein-EsxS	unknown	unknown	gnl|CDD|274862
NZ_CP009449.1|WP_003401488.1|350192_351734_+|type-VII-secretion-system-ESX-3-target-PPE4	unknown	unknown	gnl|CDD|227938
NZ_CP009449.1|WP_003401399.1|328274_328856_+|VOC-family-protein	unknown	unknown	gnl|CDD|366361
NZ_CP009449.1|WP_003401406.1|330560_330989_-|ribonuclease-VapC25	unknown	unknown	gnl|CDD|350245
NZ_CP009449.1|WP_003401386.1|321190_322384_-|DNA-polymerase-domain-containing-protein	unknown	unknown	gnl|CDD|225823
NZ_CP009449.1|WP_003401478.1|345892_349885_+|type-VII-secretion-system-ESX-3-FtsK/SpoIIIE-family-ATPase-EccC3	unknown	unknown	gnl|CDD|274858
NZ_CP009449.1|WP_003401472.1|344279_345896_+|type-VII-secretion-system-ESX-3-subunit-EccB3	unknown	unknown	gnl|CDD|368288
NZ_CP009449.1|WP_003401485.1|349881_350190_+|type-VII-secretion-system-ESX-3-target-PE5	unknown	unknown	gnl|CDD|376422
NZ_CP009449.1|WP_003904373.1|339364_339625_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003401408.1|331012_331186_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP009449.1|WP_010950370.1|326427_327561_-|alpha/beta-hydrolase	gnl|CDD|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	0.00177123
NZ_CP009449.1|WP_003401448.1|341255_342164_+|SAM-dependent-methyltransferase	gnl|CDD|225852	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism].	1.10201e-94
NZ_CP009449.1|WP_003902925.1|328785_329511_-|TetR/AcrR-family-transcriptional-regulator	gnl|CDD|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.82701e-07
NZ_CP009449.1|WP_003401463.1|342387_344283_+|type-VII-secretion-system-ESX-3-AAA-family-ATPase-EccA3	gnl|CDD|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP009449.1|WP_003899884.1|322419_324102_+|acyl-CoA-synthetase	gnl|CDD|236097	PRK07788, PRK07788, acyl-CoA synthetase; Validated.	0
NZ_CP009449.1|WP_003401392.1|324118_326314_-|acyl-CoA-dehydrogenase	gnl|CDD|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	1.76306e-158
NZ_CP009449.1|WP_003401397.1|327557_328178_-|TetR/AcrR-family-transcriptional-regulator	gnl|CDD|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.87158e-12
NZ_CP009449.1|WP_003401514.1|352105_352396_+|ESAT-6-like-protein-EsxH	gnl|CDD|227179	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown].	2.85211e-21
NZ_CP009449.1|WP_010950374.1|339621_341232_+|PPE-family-protein	gnl|CDD|227938	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion].	1.45056e-73
NZ_CP009449.1|WP_003401404.1|329600_330521_+|DUF2236-domain-containing-protein	gnl|CDD|226188	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown].	2.89836e-118
NZ_CP009449.1|WP_003401503.1|351782_352076_+|type-VII-secretion-system-protein-EsxS	gnl|CDD|274862	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target. Members of this protein family include secretion targets for the two main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from pfam06013. The best characterized member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have a long C-terminal extension.	0.00514324
NZ_CP009449.1|WP_003401488.1|350192_351734_+|type-VII-secretion-system-ESX-3-target-PPE4	gnl|CDD|227938	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion].	1.09345e-59
NZ_CP009449.1|WP_003401399.1|328274_328856_+|VOC-family-protein	gnl|CDD|366361	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.	5.1808e-20
NZ_CP009449.1|WP_003401406.1|330560_330989_-|ribonuclease-VapC25	gnl|CDD|350245	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins. This subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC25, VapC29, VapC33, VapC37, and VapC39 toxins. It belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is a PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	2.23805e-60
NZ_CP009449.1|WP_003401386.1|321190_322384_-|DNA-polymerase-domain-containing-protein	gnl|CDD|225823	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair].	2.78761e-127
NZ_CP009449.1|WP_003401472.1|344279_345896_+|type-VII-secretion-system-ESX-3-subunit-EccB3	gnl|CDD|368288	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B. EccB is a family of largely Gram-positive bacterial transmembrane componenets of the type VII secretion system characterized in Mycobacterium tuberculosis, systems ESX1-5. Translocation of virulent peptides through the membranes is thought to be mediated via a complex that includes EccB, EccC, EccD, EccE, and MycP. EccB, EccC, EccD, and EccE form a stable complex in the mycobacterial cell envelope.	0
NZ_CP009449.1|WP_003401485.1|349881_350190_+|type-VII-secretion-system-ESX-3-target-PE5	gnl|CDD|376422	pfam00934, PE, PE family. This family named after a PE motif near to the amino terminus of the domain. The PE family of proteins all contain an amino-terminal region of about 110 amino acids. The carboxyl terminus of this family are variable and fall into several classes. The largest class of PE proteins is the highly repetitive PGRS class which have a high glycine content. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	7.41358e-11
NZ_CP009449.1|WP_003401478.1|345892_349885_+|type-VII-secretion-system-ESX-3-FtsK/SpoIIIE-family-ATPase-EccC3	gnl|CDD|274858	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa. This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking].	0

Protein sequences

>NZ_CP009449.1|WP_003401408.1|331012_331186_-|hypothetical-protein
MIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNRVLSEVLDEGLELNSRK
>NZ_CP009449.1|WP_003401406.1|330560_330989_-|ribonuclease-VapC25
MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPSPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCAVVSLDRDFARFASVRHIRPPI
>NZ_CP009449.1|WP_003401404.1|329600_330521_+|DUF2236-domain-containing-protein
MAISLVAHQPIPHVERPMADPPRLQLARRRRSAAGPGGNEDSLMGVALLAGPANVIMELAMPGVGYGVLESRVESGRLDRHPIKRARTTFTYVAVAVAGSDDQKAAFRRAVNKVHAQVYSTPESPVSYHAFDPELQLWVAACLYKGGVDVYRTFVGEMDDEEADHHYRAGMAMGTTLQVPPQMWPPDRAAFDRYWRQSLDRVHIDDVVRDYLYPIVALRIRGIALPGPLRRLSEGIALLITTGFLPQRFRDEMRLPWDATKQRRFDALMAVLRTVNRLMPRFVREFPFNLMLWDLDRRMRRGRPLV
>NZ_CP009449.1|WP_003902925.1|328785_329511_-|TetR/AcrR-family-transcriptional-regulator
MTRSDRPYRGVEAAERLATRRRQLLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFSTQLANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGDVRLDPDQLVDQLAALLDELTDPNLSRPRVAATAAKSGANDPQPPEVAGQPPSSARPARRS
>NZ_CP009449.1|WP_003401399.1|328274_328856_+|VOC-family-protein
MIKPHNTNTEFELGGINHVALVCSDMARTVDFYSNILGMPLIKALDLPGGQGQHFFFDAGNGDCVAFFWFADAPDRVPGLSSPVAIPGIGDITSAVSTMNHLAFHVPAERFDAYRQRLKDKGVRVGPVLNHDDSETQVSAVVHPGVYVRSFYFQDPDGITLEFACWTKEFTTSDAQAVPKTAADRRPPVAADR
>NZ_CP009449.1|WP_003401397.1|327557_328178_-|TetR/AcrR-family-transcriptional-regulator
MPDFPTQRGRRTQAAIDAAARTVVVRNGILATTVADITAEAGRSAASFYNYYDSKEAMVRQWALRFRDDANQRALSVIRHGLSDRERAYEAAAAHWYTYRNRLAEAISVSQLAMVSDDFAQYWSEICQIPISFITETVKRAQAHGYCVGDDPQLMAEAIVAMFNQFCYLQLSGKRSRRGQPDDQACIQTLANIYYRAIYSKEDSSN
>NZ_CP009449.1|WP_010950370.1|326427_327561_-|alpha/beta-hydrolase
MTGRAATPGVIREFVGLPSRTAGRAAAGGHPCQGLYHHSVGRKPKVALIAAHYQIDFSEHYLAEYMAIRGIGFLGWNTRFRGFESSFLLDHALVDIGVGVRWLREVQGVETVVLLGNSGGGSLMAAYQSQAVDPNVTPLDGMRPAAGVTELPAADAYVAAAAHLGRPDVLTAWMDAAVIDENDPVATDPELDLFDERNGPPYSPEFISRYRSAQVKRNHTITDWAESELKRVRAAGFSDRPFSVMRTWADPRMVDPSIEPTKRRPNQCYAGTPVKANRSAHGIAAACTLRGWLGMWSLRVAQTRAAPHLARITCPALVLNAEADTGIFPSDAQQIYDGLASSDKTQVSIDTDHYFTTPGARSEQADTIAKWIAKRWR
>NZ_CP009449.1|WP_003401392.1|324118_326314_-|acyl-CoA-dehydrogenase
MSIAITPEHYELADSVRSLVARVAPSEVLHAALESPVENPPPYWQAAAEQGLQGVHLAESVGGQGFGILELAVVLAEFGYGAVPGPFVPSAIASALIAAHDPQAKVLAELATGAAIAAYALDSGLTATRHGDVLVIRGEVRAVPAAAQASVLVLPVAIESRDEWVVLRNDQLEIEAVKSLDPLRPIAHVRANAVDVSDDALLSNLTMTTAHALMSTLLSAEAVGVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADTERATAAVWDAARALDDAGESSSDVEFAAAVAATLAPATAQRCTQDCIQVHGGIGFTWEHDTNVYYRRALMLAACFGRGSEYPQRVVDTATTAGMRPVDIDLDPSTEKLRAQIRAEVAALKAMPREPRTVAIAEGGWVLPYLPKPWGRAASPVEQIIIAQEFTAGRVKRPQIAIATWIVPSIVAFGTDNQKQRLLPPTFRGDIFWCQLFSEPGAGSDLASLATKATRVDGGWRITGQKIWTTGAQYSQWGALLARTDPSAPKHNGITYFLLDMKSEGVQVKPLRELTGKEFFNTVYLDDVFVPDELVLGEVNRGWEVSRNTLTAERVSIGGSDSTFLPTLGEFVDFVRDYRFEGQFDQVARHRAGQLIAEGHATKLLNLRSTLLTLAGGDPMAPAAISKLLSMRTGQGYAEFAVSSFGTDAVIGDTERLPGKWGEYLLASRATTIYGGTSEVQLNIIAERLLGLPRDP
>NZ_CP009449.1|WP_003899884.1|322419_324102_+|acyl-CoA-synthetase
MPNLTDLPGQAVSKLQKSIGQYVARGTAELHYLRKIIESGAIGLEPPLNYAALAADIRKWGEVGMLPSHNARRAPNRAAVIDEEGTLTFSELDEAAHAVANGLLAKGVRAGDGVAILARNHRWFVIANYGAARVGARIILLNSEFSGPQIKEVSDREGAKVIIYDDEYTKAVSLAQPPLGKLRALGVNPDDDKPSGSSDETLAELIAHSSTAPAPKASRRASIIILTSGTTGTPKGANRNTPPTLAPIGGILSHVPFKAGEVTLLPSPMFHALGYMHAALAMFLGSTLVLRRRFKPALVLEDIEKHKATSMVVVPVMLSRILDQLEKTEPKPDLSSLKIVFVSGSQLGAELATRALGDLGPVIYNMYGSTEVAFATIAGPKDLQFNPSTVGPVVKGVTVKILDENGNEVPQGAVGRIFVGNAFPFEGYTGGGGKQIIDGLLSSGDVGYFDERGLLYVSGRDDEMIVSGGENVFPAEVEDLISGHPDVVEAAAIGVDDKEFGARLRAFVVKKPGADLDEDTIKQYVRDHLARYKVPREVIFLDELPRNPTGKVLKRELRKL
>NZ_CP009449.1|WP_003401386.1|321190_322384_-|DNA-polymerase-domain-containing-protein
MSRMAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMILKRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDLNPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFHVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRTVASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLMLAEELGPPQKAQSAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLRPADVLVDGMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPWPR
>NZ_CP009449.1|WP_003904373.1|339364_339625_+|hypothetical-protein
MPTRGTSPAKIGGLQNNSGPGKGFGISQNISHIYAVGASADGSWQHPWAGAERSLVSGWDLHCGAPWCGIVVMKIMFISPLWCLRL
>NZ_CP009449.1|WP_010950374.1|339621_341232_+|PPE-family-protein
MTLWMASPPEVHSALLSSGPGPGSVLSAAGVWSSLSAEYAAVADELIGLLGAVQTGAWQGPSAAAYVAAHAPYLAWLMRASETSAEAAARHETVAAAYTTAVAAMPTLVELAANHTLHGVLVATNFFGINTIPIALNEADYARMWTQAASTMATYQAVAEAAVASAPQTTPAPPILAAEAADDDHDHDHDHGGEPTPLDYLVAEILRIISGGRLIWDPAEGTMNGIPFEDYTDAAQPIWWVVRAIEFSKDFETFVQELFVNPVEAFQFYFELLLFDYPTHIVQIVEALSQSPQLLAVALGSVISNLGAVTGFAGLSGLAGMQPAAIPALAPVAAAPPTLPAVAMAPTMAAPGAAVASAAAPASAPAASTVASATPAPPPAPGAAGFGYPYAIAPPGIGFGSGMSASASAQRKAPQPDSAAAAAAAAAVRDQARARRRRRVTRRGYGDEFMDMNIDVDPDWGPPPGEDPVTSTVASDRGAGHLGFAGTARREAVADAAGMTTLAGDDFGDGPTTPMVPGSWDPDRDAPGSAEPGDRG
>NZ_CP009449.1|WP_003401448.1|341255_342164_+|SAM-dependent-methyltransferase
MRTEGDSWDITTSVGSTALFVATARALEAQKSDPLVVDPYAEAFCRAVGGSWADVLDGKLPDHKLKSTDFGEHFVNFQGARTKYFDEYFRRAAAAGARQVVILAAGLDSRAYRLPWPDGTTVFELDRPQVLDFKREVLASHGAQPRALRREIAVDLRDDWPQALRDSGFDAAAPSAWIAEGLLIYLPATAQERLFTGIDALAGRRSHVAVEDGAPMGPDEYAAKVEEERAAIAEGAEEHPFFQLVYNERCAPAAEWFGERGWTAVATLLNDYLEAVGRPVPGPESEAGPMFARNTLVSAARV
>NZ_CP009449.1|WP_003401463.1|342387_344283_+|type-VII-secretion-system-ESX-3-AAA-family-ATPase-EccA3
MAGVGAGDSGGVERDDIGMVAASPVASRVNGKVDADVVGRFATCCRALGIAVYQRKRPPDLAAARSGFAALTRVAHDQCDAWTGLAAAGDQSIGVLEAASRTATTAGVLQRQVELADNALGFLYDTGLYLRFRATGPDDFHLAYAAALASTGGPEEFAKANHVVSGITERRAGWRAARWLAVVINYRAERWSDVVKLLTPMVNDPDLDEAFSHAAKITLGTALARLGMFAPALSYLEEPDGPVAVAAVDGALAKALVLRAHVDEESASEVLQDLYAAHPENEQVEQALSDTSFGIVTTTAGRIEARTDPWDPATEPGAEDFVDPAAHERKAALLHEAELQLAEFIGLDEVKRQVSRLKSSVAMELVRKQRGLTVAQRTHHLVFAGPPGTGKTTIARVVAKIYCGLGLLKRENIREVHRADLIGQHIGETEAKTNAIIDSALDGVLFLDEAYALVATGAKNDFGLVAIDTLLARMENDRDRLVVIIAGYRADLDKFLDTNEGLRSRFTRNIDFPSYTSHELVEIAHKMAEQRDSVFEQSALHDLEALFAKLAAESTPDTNGISRRSLDIAGNGRFVRNIVERSEEEREFRLDHSEHAGSGEFSDEELMTITADDVGRSVEPLLRGLGLSVRA
>NZ_CP009449.1|WP_003401472.1|344279_345896_+|type-VII-secretion-system-ESX-3-subunit-EccB3
MTNQQHDHDFDHDRRSFASRTPVNNNPDKVVYRRGFVTRHQVTGWRFVMRRIAAGIALHDTRMLVDPLRTQSRAVLMGVLIVITGLIGSFVFSLIRPNGQAGSNAVLADRSTAALYVRVGEQLHPVLNLTSARLIVGRPVSPTTVKSTELDQFPRGNLIGIPGAPERMVQNTSTDANWTVCDGLNAPSRGGADGVGVTVIAGPLEDTGARAAALGPGQAVLVDSGAGTWLLWDGKRSPIDLADHAVTSGLGLGADVPAPRIIASGLFNAIPEAPPLTAPIIPDAGNPASFGVPAPIGAVVSSYALKDSGKTISDTVQYYAVLPDGLQQISPVLAAILRNNNSYGLQQPPRLGADEVAKLPVSRVLDTRRYPSEPVSLVDVTRDPVTCAYWSKPVGAATSSLTLLAGSALPVPDAVHTVELVGAGNGGVATRVALAAGTGYFTQTVGGGPDAPGAGSLFWVSDTGVRYGIDNEPQGVAGGGKAVEALGLNPPPVPIPWSVLSLFVPGPTLSRADALLAHDTLVPDSRPARPVSAEGGYR
>NZ_CP009449.1|WP_003401478.1|345892_349885_+|type-VII-secretion-system-ESX-3-FtsK/SpoIIIE-family-ATPase-EccC3
MSRLIFEARRRLAPPSSHQGTIIIEAPPELPRVIPPSLLRRALPYLIGILIVGMIVALVATGMRVISPQTLFFPFVLLLAATALYRGNDKKMRTEEVDAERADYLRYLSVVRDNIRAQAAEQRASALWSHPDPTALASVPGSRRQWERDPHDPDFLVLRAGRHTVPLATTLRVNDTADEIDLEPVSHSALRSLLDTQRSIGDVPTGIDLTKVSRITVLGERAQVRAVLRAWIAQAVTWHDPTVLGVALAARDLEGRDWNWLKWLPHVDIPGRLDALGPARNLSTDPDELIALLGPVLADRPAFTGQPTDALRHLLIVVDDPDYDLGASPLAVGRAGVTVVHCSASAPHREQYSDPEKPILRVAHGAIERWQTGGWQPYIDAADQFSADEAAHLARRLSRWDSNPTHAGLRSAATRGASFTTLLGIEDASRLDVPALWAPRRRDEELRVPIGVTGTGEPLMFDLKDEAEGGMGPHGLMIGMTGSGKSQTLMSILLSLLTTHSAERLIVIYADFKGEAGADSFRDFPQVVAVISNMAEKKSLADRFADTLRGEVARREMLLREAGRKVQGSAFNSVLEYENAIAAGHSLPPIPTLFVVADEFTLMLADHPEYAELFDYVARKGRSFRIHILFASQTLDVGKIKDIDKNTAYRIGLKVASPSVSRQIIGVEDAYHIESGKEHKGVGFLVPAPGATPIRFRSTYVDGIYEPPQTAKAVVVQSVPEPKLFTAAAVEPDPGTVIADTDEQEPADPPRKLIATIGEQLARYGPRAPQLWLPPLDETIPLSAALARAGVGPRQWRWPLGEIDRPFEMRRDPLVFDARSSAGNMVIHGGPKSGKSTALQTFILSAASLHSPHEVSFYCLDYGGGQLRALQDLAHVGSVASALEPERIRRTFGELEQLLLSRQQREVFRDRGANGSTPDDGFGEVFLVIDNLYGFGRDNTDQFNTRNPLLARVTELVNVGLAYGIHVIITTPSWLEVPLAMRDGLGLRLELRLHDARDSNVRVVGALRRPADAVPHDQPGRGLTMAAEHFLFAAPELDAQTNPVAAINARYPGMAAPPVRLLPTNLAPHAVGELYRGPDQLVIGQREEDLAPVILDLAANPLLMVFGDARSGKTTLLRHIIRTVREHSTADRVAFTVLDRRLHLVDEPLFPDNEYTANIDRIIPAMLGLANLIEARRPPAGMSAAELSRWTFAGHTHYLIIDDVDQVPDSPAMTGPYIGQRPWTPLIGLLAQAGDLGLRVIVTGRATGSAHLLMTSPLLRRFNDLQATTLMLAGNPADSGKIRGERFARLPAGRAILLTDSDSPTYVQLINPLVDAAAVSGETQQKGSQS
>NZ_CP009449.1|WP_003401485.1|349881_350190_+|type-VII-secretion-system-ESX-3-target-PE5
MTLRVVPEGLAAASAAVEALTARLAAAHASAAPVITAVVPPAADPVSLQTAAGFSAQGVEHAVVTAEGVEELGRAGVGVGESGASYLAGDAAAAATYGVVGG
>NZ_CP009449.1|WP_003401488.1|350192_351734_+|type-VII-secretion-system-ESX-3-target-PPE4
MAAPIWMASPPEVHSALLSNGPGPGSLVAAATAWSQLSAEYASTAAELSGLLGAVPGWAWQGPSAEWYVAAHLPYVAWLTQASADAAGAAAQHEAAAAAYTTALAAMPTLAELAANHVIHTVLVATNFFGINTIPITLNEADYVRMWLQAAAVMGLYQAASGAALASAPRTVPAPTVMNPGGGAASTVGAVNPWQWLLALLQQLWNAYTGFYGWMLQLIWQFLQDPIGNSIKIIIAFLTNPIQALITYGPLLFALGYQIFFNLVGWPTWGMILSSPFLLPAGLGLGLAAIAFLPIVLAPAVIPPASTPLAAAAVAAGSVWPAVSMAVTGAGTAGAATPAAGAAPSAGAAPAPAAPATASFAYAVGGSGDWGPSLGPTVGGRGGIKAPAATVPAAAAAAATRGQSRARRRRRSELRDYGDEFLDMDSDSGFGPSTGDHGAQASERGAGTLGFAGTATKERRVRAVGLTALAGDEFGNGPRMPMVPGTWEQGSNEPEAPDGSGRGGGDGLPHDSK
>NZ_CP009449.1|WP_003401503.1|351782_352076_+|type-VII-secretion-system-protein-EsxS
MSLLDAHIPQLVASQSAFAAKAGLMRHTIGQAEQAAMSAQAFHQGESSAAFQAAHARFVAAAAKVNTLLDVAQANLGEAAGTYVAADAAAASTYTGF
>NZ_CP009449.1|WP_003401514.1|352105_352396_+|ESAT-6-like-protein-EsxH
MSQIMYNYPAMLGHAGDMAGYAGTLQSLGAEIAVEQAALQSAWQGDTGITYQAWQAQWNQAMEDLVRAYHAMSSTHEANTMAMMARDTAEAAKWGG

Crispr_ID: NZ_CP009449_2

• CRISPR_ID: NZ_CP009449_2
• CRISPR_location: 691003-691079
• CRISPR_type: TypeV-U4
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP009449_2

Consensus_repeat	Method
TGAGGTGCGGCGTGAGCGCGGGT	CRISPRCasFinder

spacers of NZ_CP009449_2

>2.1|691026|31|NZ_CP009449|CRISPRCasFinder
AGCGCGAACGGCAAGCCGAACCGTTGGACCC

CRISPR arrays and Neighbor proteins around NZ_CP009449_2

CRISPR arrays

The CRISPR arrays of NZ_CP009449_2

>merge|NZ_CP009449|2|691003-691079|CRISPRCasFinder
TGAGGTGCGGCGTGAGCGCGGGTAGCGCGAACGGCAAGCCGAACCGTTGGACCCTGAGGTGCGGCGTGAGCGCGGGT

>NZ_CP009449|2|1|691003-691079|CRISPRCasFinder
TGAGGTGCGGCGTGAGCGCGGGT	AGCGCGAACGGCAAGCCGAACCGTTGGACCC
TGAGGTGCGGCGTGAGCGCGGGT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009449.1|WP_003403119.1|692214_693765_+|MCE-family-protein	unknown	unknown	gnl|CDD|224380
NZ_CP009449.1|WP_003403065.1|683385_684108_+|transcriptional-regulator	unknown	unknown	gnl|CDD|225097
NZ_CP009449.1|WP_003403047.1|676897_677305_+|ribonuclease-VapC26	unknown	unknown	gnl|CDD|350263
NZ_CP009449.1|WP_003403107.1|687007_688039_+|MCE-family-protein	unknown	unknown	gnl|CDD|224380
NZ_CP009449.1|WP_010950421.1|698833_699145_+|hypothetical-protein	unknown	unknown	gnl|CDD|377032
NZ_CP009449.1|WP_003403052.1|677364_678051_-|hypothetical-protein	unknown	unknown	gnl|CDD|378485
NZ_CP009449.1|WP_003403139.1|696541_696778_-|antitoxin-VapB27	unknown	unknown	gnl|CDD|224913
NZ_CP009449.1|WP_010950420.1|698015_698777_-|DNA-binding-response-regulator	unknown	unknown	gnl|CDD|223816
NZ_CP009449.1|WP_003403109.1|688035_689481_+|virulence-factor-Mce-family-protein	unknown	unknown	gnl|CDD|273384
NZ_CP009449.1|WP_010950416.1|678204_680838_+|hypothetical-protein	unknown	unknown	gnl|CDD|226067
NZ_CP009449.1|WP_003403128.1|694645_695881_-|hypothetical-protein	unknown	unknown	gnl|CDD|224292
NZ_CP009449.1|WP_080742908.1|697501_697972_-|HAMP-domain-containing-protein	unknown	unknown	gnl|CDD|236751
NZ_CP009449.1|WP_010950417.1|680860_683248_-|lysylphosphatidylglycerol-synthetase-family-protein	unknown	unknown	gnl|CDD|377103
NZ_CP009449.1|WP_003403137.1|696131_696545_-|ribonuclease-VapC27	unknown	unknown	gnl|CDD|350248
NZ_CP009449.1|WP_003900973.1|696881_697388_-|sensor-histidine-kinase	unknown	unknown	gnl|CDD|223715
NZ_CP009449.1|WP_010950418.1|685796_687011_+|MCE-family-protein-MCE2A	unknown	unknown	gnl|CDD|378749
NZ_CP009449.1|WP_003403095.1|684104_684902_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|223838
NZ_CP009449.1|WP_003403122.1|693816_694209_-|toxin-VapC4	unknown	unknown	gnl|CDD|350335
NZ_CP009449.1|WP_003403101.1|684903_685791_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|223838
NZ_CP009449.1|WP_003403125.1|694205_694463_-|antitoxin-VapB4	unknown	unknown	gnl|CDD|226603

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP009449.1|WP_003403119.1|692214_693765_+|MCE-family-protein	gnl|CDD|224380	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism].	2.75938e-80
NZ_CP009449.1|WP_003403065.1|683385_684108_+|transcriptional-regulator	gnl|CDD|225097	COG2186, FadR, Transcriptional regulators [Transcription].	4.76819e-52
NZ_CP009449.1|WP_003403047.1|676897_677305_+|ribonuclease-VapC26	gnl|CDD|350263	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins. Mycobacterium tuberculosis VapC26 cleaves 23S rRNA in the Sarcin-Ricin Loop, it is inhibited by the cognate VapB26 antitoxin. This subfamily belongs to the VapC (virulence-associated protein C)-like nuclease family of the PIN domain-like superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	2.4948e-60
NZ_CP009449.1|WP_003403107.1|687007_688039_+|MCE-family-protein	gnl|CDD|224380	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism].	4.80905e-74
NZ_CP009449.1|WP_010950421.1|698833_699145_+|hypothetical-protein	gnl|CDD|377032	pfam03413, PepSY, Peptidase propeptide and YPEB domain. This region is likely to have an protease inhibitory function (personal obs:C Yeats). This model is likely to miss some members of this family as the separation from signal to noise is not clear. The name is derived from Peptidase & Bacillus subtilis YPEB.	0.00793266
NZ_CP009449.1|WP_003403052.1|677364_678051_-|hypothetical-protein	gnl|CDD|378485	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN. This family is conserved in Mycobacteriaceae and is likely to be a lipoprotein.	5.50369e-72
NZ_CP009449.1|WP_003403139.1|696541_696778_-|antitoxin-VapB27	gnl|CDD|224913	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription].	1.50922e-07
NZ_CP009449.1|WP_010950420.1|698015_698777_-|DNA-binding-response-regulator	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	7.37207e-84
NZ_CP009449.1|WP_003403109.1|688035_689481_+|virulence-factor-Mce-family-protein	gnl|CDD|273384	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells. [Cellular processes, Pathogenesis].	3.45904e-92
NZ_CP009449.1|WP_010950416.1|678204_680838_+|hypothetical-protein	gnl|CDD|226067	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism].	0
NZ_CP009449.1|WP_003403128.1|694645_695881_-|hypothetical-protein	gnl|CDD|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.27416e-77
NZ_CP009449.1|WP_080742908.1|697501_697972_-|HAMP-domain-containing-protein	gnl|CDD|236751	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB.	1.39186e-13
NZ_CP009449.1|WP_010950417.1|680860_683248_-|lysylphosphatidylglycerol-synthetase-family-protein	gnl|CDD|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	2.36174e-22
NZ_CP009449.1|WP_003403137.1|696131_696545_-|ribonuclease-VapC27	gnl|CDD|350248	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins. This subfamily includes Mycobacterium tuberculosis VapC27 and VapC40. It belongs to the VapC (virulence-associated protein C)-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	9.76945e-42
NZ_CP009449.1|WP_003900973.1|696881_697388_-|sensor-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.10494e-27
NZ_CP009449.1|WP_010950418.1|685796_687011_+|MCE-family-protein-MCE2A	gnl|CDD|378749	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative. Mce4_CUP1 is a family of putative Mce4 transporters of cholesterol. The domain is found associated with pfam02470. The full TCDB classification for this family in conjunction with PF02470 is TC:3.A.1.27.4.	5.89264e-113
NZ_CP009449.1|WP_003403095.1|684104_684902_+|ABC-transporter-permease	gnl|CDD|223838	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	9.02403e-82
NZ_CP009449.1|WP_003403122.1|693816_694209_-|toxin-VapC4	gnl|CDD|350335	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins. This subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 toxin of the VapBC toxin/antitoxin (TA) system. This family belongs to the PIN_VapC4-5_FitB-like subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. M. tuberculosis VapC4 interacts with, and cleaves tRNA44Cys-GCA. M. tuberculosis VapC5 has endonucleolytic activity with RNA, this activity is low with dsRNA, and no activity has been demonstrated on dsDNA. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	5.73431e-57
NZ_CP009449.1|WP_003403101.1|684903_685791_+|ABC-transporter-permease	gnl|CDD|223838	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	2.8651e-83
NZ_CP009449.1|WP_003403125.1|694205_694463_-|antitoxin-VapB4	gnl|CDD|226603	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	2.38527e-16

Protein sequences

>NZ_CP009449.1|WP_003403109.1|688035_689481_+|virulence-factor-Mce-family-protein
MRTLTEFNRGRVGMMGAVVTVLVVGVAQSFTSVPMLFATPTYYAQFADMGGINTGDKVEIAGVNVGLVRSLAIRGNRVLIGFSLPGKTIGMQSRAAIRTDTILGRKNLEIEPRGSEPLKPNGFLPLAQTTTPYQIYDAFVDVTKAATGWDIDAVKRSLNVLSETFDQTAPHLSAALEGVKAFSDTVGRRGEQIEQLLANANRIARVLGDRSEQVNGLLVNAKTLLAAFKQRSQALRILLTNVSEASAQVSGLITDNPNLNHVLAQLRTVSEELVKRKNELADVAVLLGRYTAALTEAVGSGPFFKAMVVNLLPYQILQPWVDAAFKKRGIDPENFWRSAGLPEFRWPDPNGTRFPNGAPPAAPPVREGTPKHPGPAVPPGTPCSYTPAAGALPRPDNPLPCAGATVGPFGGPDFPAPLDVQPSPPNPDGPPPTPGILSAGRPGEPAPAVPGIPMPLPPNAPPGARTQPLEPFPDGTGGSNQ
>NZ_CP009449.1|WP_003403107.1|687007_688039_+|MCE-family-protein
MKTTGTTIKLGIVWLVLSVFTVMIIVVFGQVRFHHTTGYSAVFTHVSGLRAGQFVRAAGVEVGKVAKVTLIDGDKQVLVDFTVDRSLSLDQATTASIRYLNLIGDRYLELGRGHSGQRLAPGATIPLEHTHPALDLDALLGGFRPLFQTLDPDKVNSIASSIITVFQGQGATINDILDQTASLTATLADRDHAIGEVVNNLNTVLATTVKHQTEFDRTVDKLEVLITGLKNRADPLAAAAAHISSAAGTLADLLGADRPLLHSSFGHLEGIQQPLIDELAELDHVLGKLPDAYRIIGRAGGIYGDFFNFYLCDISLKVNGLQPGGPVRTVKLFGQPTGRCTPQ
>NZ_CP009449.1|WP_010950418.1|685796_687011_+|MCE-family-protein-MCE2A
MPTLVTRKNRRAWLYVEGVVLLLVGALVLVLVYKQFRGEFTPKTELTMVASRAGLVMEAGSKVTYNGVEIGRVGSISEIERDGRPAAKLVLDVNPRYISLIPVNVVADIEAATLFGNKYVALSAPKIPQQQRISSHDVIDVGSVTTEFNTLFETITSIAEKVDPIELNATLSAVAQAPDGLGGKFGESIVNGNQILAQLNPRLPQLGYDVRRLADLGEVYVDASPDLWSFLQNALTTARTLTSQQRDLDAALLAATGAGNTGEDVFARGGPYLARAAADLVPTATLLDTYSPELFCMIRNFHDAAPKVADAVGGNGYSLAAAGTILGAPNPYVYPDNLPRVNAHGGPGGRPGCWQTITRELWPAPYLVMDTGASLAPYNHVELGQPMFTEYVWGRQYGENTINP
>NZ_CP009449.1|WP_003403101.1|684903_685791_+|ABC-transporter-permease
MVESSTASAAAVLRARYPRTAASLDRYGGGTARRLERTGTFARFTRISVVQIGWALRRYRRETLRLVAEIGMGTGAMAVVGGTVAIIGFVTLSGGSLIAIQGFASLGNIGVEAFTGFFAALANTRVAAPIVSGVALAATVGAGATAQLGAMRISEEIDALEVMGIKSISFLVSTRILGGLVVIMPLYALALDMAFTSGQVVTTVFYGQSNGTYEHYFRTFLRPEDVGWSVVEVVIIAVVVMITHCYYGYTASGGPVGVGQAVGRSMRFSLVSVVVVVLLAELALYGVDPNFNLTV
>NZ_CP009449.1|WP_003403095.1|684104_684902_+|ABC-transporter-permease
MTTHAVIITYLRDQTQPAVDAIGGFYRTCVLTGKALVRRPFHWREAIEQGWFITSVSLLPTLAVSIPLTVLIIFTLNILLAEFGAADISGAGAALGAVTQLGPLTTVLVIAGAGATAICADLGARTIREEIDAMEVLGIDPIHRLVVPRVVAATIVAALLNGAVITIGLVGGFVFSVFIQHVSAGAYVGTLTLVTGLPEVIISVVKSATFGLIAGLVGCYRGLTTKGGPKGVGTAVNETLVLCVIALFATNVVLTTIGVRFGTGH
>NZ_CP009449.1|WP_003403065.1|683385_684108_+|transcriptional-regulator
MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAAGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAAERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEPTLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVLVSQASRQ
>NZ_CP009449.1|WP_010950417.1|680860_683248_-|lysylphosphatidylglycerol-synthetase-family-protein
MRVDGRDIGVSGNLLQPLTRRTNDIIRAVLAAIYLVAVITSSLITRPQWVALEKSISEIVGVLSPSQSDLVYLGYGLAILALPFVILIGLIVSRQWKLLGAYAAAGLMAVLPLSISSSRIAAPRWHFDLSDRLATLLAQFLDDPRWIAILAAVLTVSGPWLPARWRHWWWALLLAFVPIHLVVSAIVPARSLLGLAVGWLVGALVVLVVGTPALEVPLDGAIRALAKRGFAVSGLAVVRPAGPGPLVLSAACEQPNAGACSEALIELYGPHQSGGGALRQLWLKLTLRGTETAPLQASMRRAVEHRALMAIAFGDLGMANTTVIAVSPLDRGWTLYAHRPARGIGISECTKTTPTAHVWEALRTLHDQQISHGDLCSAEITVDNGAVLFGGFGEAEYGATDAQLQSDLAQLLVTTSALYDAEAAVTAAIDTFGKQAILAASRRLTKSAVPKRIRESITDPNAVIASTRAEVMRQTGADQIKAETITRFSRGQLIQLVLIGALVYVAYPFISTVPTFFSQLRTANWWWALLGLAVSALTYVGAAAALWACADGLVGFWKLSIMQVANTFAATTTPAGVGGLALSTRFLQKGGLTAVRATAAVALQQSVQVIVHLVLLILFSALAGTSTDLSHFVPNATVLYLIAGVALGIVGTFLFVPKLRRWLATAVRPKLREVTNDLIALAREPKRLALIVLGCAGTTLGAALALWASIEAFGGGTTFVTVTVVTMVGGTLASAAPTPGGVGAVEAALIGGLAAFGVPAALGVPSVLLYRLLTCWLPVFAGWQVMHWLTRHEMI
>NZ_CP009449.1|WP_010950416.1|678204_680838_+|hypothetical-protein
MRARRLRRALAALLAVAGLFVPFIVGVPTAYDGEPVFVAIPVEHVNTLIGTGTGAAIVGEINNFPGASVPFGMVQYSPDTVDNYAGYDYGNPHSTGFSMTHASVGCPAFGDISMLPTTTPLGSQPWSAWEEIAHDDTEVGVPGYYTVRFPGTGVIAELTATTRTGVGRFRYPRNGWPALFHVRSGASLAGNYAATLQIEDNTTITGSATSGGFCGKKNLYTVYFAMKFSQPFSSYGTWDGYAVYPGSHSMNSSYSGGYVGFPAGSVLEVRTALSYVSVDGARANLDAEGGASFDDIRAATSSEWNAALSRIAVAGRGPGDVDTFYTCLYRSLLHPNTFNDVDGRYIGFDGVIHSVASGHTHYANFSDWDTYRSLAPLQGLLFPQRASDMIQSLVTDAEQSGAYPRWALANSATGMMSGDSVVPLIVNLYAFGARDFDLKSALHYMVNAATQGGVGLDGFLERPGIAAYLRLGYGPQTAEFRANGRIAGASVTLEWSVDDFAISRFADSLGDTATAAVFQNRSQYWQNLFNPTTGYISPRSAAGFFPDGPGFVAYPSGFGQDGYDEGNAEQYLWWVPHNVAGLVTALGGRTAVVKRLDRFTKKLNVGPNEPYLWAGNEPGFGVPWLYNYIGQPWKTQRTVDRVRGLFGPTPGGAPGNDDLGALSSWYVWAALGLYPSTPGTTILTVNTPLFDRAVIALPTGKSIQITAPGASGRNRLKYIDGLTIDRQPSNQTFLPESIVRTGGDLTFSLAGTPNKVWGTAASAAPPSFGAGSSAVTVNIARPIIGIVPGATGTVTVDAQRMIDGVDDYTVTPTSYVVGIAAEPLSGQFDDDGAVSASVAITVARSVPSGYYPIYVTTSAGDSARTLIVLVVVAEAVE
>NZ_CP009449.1|WP_003403052.1|677364_678051_-|hypothetical-protein
MKHFTAAVATVALSLALAGCSFNIKTDSAPTTSPTTTSPTTSTTTTSATTSAQAAGPNYTIADYIRDNHIQETPVHHGDPGSPTIDLPVPDDWRLLPESSRAPYGGIVYTQPADPNDPPTIVAILSKLTGDIDPAKVLQFAPGELKNLPGFQGSGDGSAATLGGFSAWQLGGSYSKNGKLRTVAQKTVVIPSQGAVFVLQLNADALDDETMTLMDAANVIDEQTTITP
>NZ_CP009449.1|WP_003403047.1|676897_677305_+|ribonuclease-VapC26
MIIDTSALLAYFDAAEPDHAAVSECIDSSADALVVSPYVVAELDYLVATRVGVDAELAVLRELAGGAWELANCGAAEIEQAARIVTKYQDQRIGIADAANVVLADRYRTRTILTLDRRHFSALRPIGGGRFTVIP
>NZ_CP009449.1|WP_003403119.1|692214_693765_+|MCE-family-protein
MLTRAIKTQLVLLTVLAVIAVVVLGWYFLRIPSLVGIGRYTLYAELPRSGGLYRTANVTYRGITIGKVTGVEPTERGARATMSIDNGYQIPTDASANVHSVSAVGEQFVDLVSTRTSGPYLRHGQTITTTTVPSQIGPALDAANRGLAVLPKDRVASVLHEASEAVGGLGSSLNRLIEATQAIAHDVRGSLEDIDDIIERSAPIIDSQVNSGNEIARWAANLNTLAAQTAQTDPAVRSILANAAPTADQVNATFSDVRESLPQTLANLEVVIDMLKRYHNGVEQALVFLPQSGAIAQSVTTEFPGQAGLGVGGLALNQPPPCLTGFLPASEWRSPADTSTAPLPKGTYCRIPMDASNVVRGARNNPCVDVPGKRAATPRECRSNEAYVPGGTNPWYGDPNQMLSCPAPAARCDQPVKPGQVIPAPSVNNGINPLPADQLPGTPPPVNDPLQRPGSGTVQCNGQQPNPCVYTPSTFPTTIYDVQSGKVVAPDGVVYSVEASTHAGADGWKVMLAPTG
>NZ_CP009449.1|WP_003403122.1|693816_694209_-|toxin-VapC4
MNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAMPDVEVITI
>NZ_CP009449.1|WP_003403125.1|694205_694463_-|antitoxin-VapB4
MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWLPAAEVIGELVRLGPDTTNLGEELRETLTQTTDDVRW
>NZ_CP009449.1|WP_003403128.1|694645_695881_-|hypothetical-protein
MGVVERAIAPSVLAALADTPVVVVNGARQVGKTTLVARLDYPGSSEVVSLDDVANRDAARDDPRAFVSRPVDTLVIDEAQLEPGLFRAIKAEVDRDRRPGRFLLTGSARLLSAPDMADALVGRVEIIELWPFSQGERAGIADGFVDALFTAPRELIHGSDMRRADLVDRIATGGFPDIVARSPSRRRAWFDNYLTTATQSVIREISPIERLAEMPRVLRLCAARTGAELNVSALANDLSIPARTTAGYLALLEAAFLIHRVPAWSTNLSRKVIRRPKLVVSDSGLACHLLGVTGATLDRPGRPLGPLLETFVANEIRKQLTWSTERPSLWHFRDRGGAEVDLVLEHPDGRVCGIEVKATSTPRAEDLRGLRYLAERLDDRFQFGVLLTAAPEATPFGPTLAALPVSTLWAG
>NZ_CP009449.1|WP_003403137.1|696131_696545_-|ribonuclease-VapC27
MKPPLAVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAARLLTERFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAKDTYEKIGVHVVVAA
>NZ_CP009449.1|WP_003403139.1|696541_696778_-|antitoxin-VapB27
MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATGETTIDDEVVFGLIDSGRK
>NZ_CP009449.1|WP_003900973.1|696881_697388_-|sensor-histidine-kinase
MPITPLLHESVARFAATGADITTRAEPDLFVSIDPDHLRRILTAVLDNAITHGDGEIAVTAHARDGAVDIGVRDHGPGFADHFLPVAFDRFTRADTARGGRGSGLGLAIVAALTTTHGGHANATNHPDGGAELRITLPTPRPPFHEELPRITSSDTKDPNREHDTSDQ
>NZ_CP009449.1|WP_080742908.1|697501_697972_-|HAMP-domain-containing-protein
MALVLAAAGAVTVVQFRDAAHEAAPDGALRGLPDDITADLVRELVTILPIVLVIAAVAAYLLSRAALRPVDRIRAAAQTLTTTPHPDTDAPLPVPPTDDEIAWLATTLNTMLTRLQRALAHEQQFVADASHELRTPLALLTTELELRCAGPAPPTS
>NZ_CP009449.1|WP_010950420.1|698015_698777_-|DNA-binding-response-regulator
MADETTMRAGRGPGRACGRVSGVRILVIEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGGRHALPR
>NZ_CP009449.1|WP_010950421.1|698833_699145_+|hypothetical-protein
MNRIVQFGVSAVAAAAIGIGAGSGIAAAFDGEDEVTGPDADRARAAAVQAVPGGTAGEVETETGEGAAAYGVLVTRADGTRVEVHLDRDFRVLDTKPADGDGG

Crispr_ID: NZ_CP009449_3

• CRISPR_ID: NZ_CP009449_3
• CRISPR_location: 922592-922721
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers
• Cas_protein_info: csa3

Consensus repeat of NZ_CP009449_3

Consensus_repeat	Method
CCGCCGGCTCCGCCGGTGGCGCCGC	PILER-CR

spacers of NZ_CP009449_3

>3.1|922617|23|NZ_CP009449|PILER-CR
CCCCGGTGGCGGCACCACCAGCC
>3.2|922665|44|NZ_CP009449|PILER-CR
CAAAGCCTAGGCCGAGGACAGCAATGCCCTCGAAGACGCCGTCA

CRISPR arrays and Neighbor proteins around NZ_CP009449_3

CRISPR arrays

The CRISPR arrays of NZ_CP009449_3

>merge|NZ_CP009449|3|922592-922721|PILER-CR
CCTCCGGCTCCGCCGGTGGCGCCGTCCCCGGTGGCGGCACCACCAGCCCCGGCGGCGCCGCCAAAGCCTAGGCCGAGGACAGCAATGCCCTCGAAGACGCCGTCACCGCCGGCTCCGCCGGTGGCGCCGC

>NZ_CP009449|3|2|922592-922721|PILER-CR
CCTCCGGCTCCGCCGGTGGCGCCGT	CCCCGGTGGCGGCACCACCAGCC
CCGGCGGCGCCGCCAAAGCCTAGGC	CGAGGACAGCAATGCCCTCGAAGACGCCGTCACCGCCGGCTCCG
CCGGTGGCGCCGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009449.1|WP_010950452.1|925101_925746_+|sensor-domain-containing-protein	unknown	unknown	gnl|CDD|372884
NZ_CP009449.1|WP_003404335.1|916901_917294_-|transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl|CDD|197713
NZ_CP009449.1|WP_010950453.1|926358_927081_-|hypothetical-protein	unknown	unknown	gnl|CDD|227186
NZ_CP009449.1|WP_003404373.1|929731_930544_+|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|316372
NZ_CP009449.1|WP_003404349.1|918130_919036_+|SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|225852
NZ_CP009449.1|WP_003907492.1|928441_928630_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003898607.1|925726_926278_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003404370.1|928868_929645_+|D-Ala-D-Ala-dipeptidase-VanX	unknown	unknown	gnl|CDD|279735
NZ_CP009449.1|WP_003404336.1|917351_917774_-|nucleoside-deaminase	unknown	unknown	gnl|CDD|223663
NZ_CP009449.1|WP_010950448.1|912637_913807_-|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl|CDD|129820
NZ_CP009449.1|WP_003404321.1|913894_914911_-|acyl-ACP-desaturase	unknown	unknown	gnl|CDD|153109
NZ_CP009449.1|WP_003907494.1|931559_931823_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003404368.1|927151_928180_-|hypothetical-protein	unknown	unknown	gnl|CDD|227198
NZ_CP009449.1|WP_003907493.1|928648_928918_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_038438802.1|915794_916850_+|DUF2236-domain-containing-protein	unknown	unknown	gnl|CDD|226188
NZ_CP009449.1|WP_003404326.1|915072_915714_-|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224228
NZ_CP009449.1|WP_003404376.1|930611_931472_-|proline-iminopeptidase	unknown	unknown	gnl|CDD|188121
NZ_CP009449.1|WP_003900218.1|917735_918026_+|transposase	unknown	unknown	gnl|CDD|223747
NZ_CP009449.1|WP_003404355.1|921826_922006_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003404352.1|919054_919870_-|TIGR04255-family-protein	unknown	unknown	gnl|CDD|275082

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP009449.1|WP_003404335.1|916901_917294_-|transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	4.4e-21	70.2	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP009449.1|WP_010950452.1|925101_925746_+|sensor-domain-containing-protein	gnl|CDD|372884	pfam14032, PknH_C, PknH-like extracellular domain. This domain is functionally uncharacterized. It is found as the periplasmic domain of the bacterial protein kinase PknH. The domain is also found in isolation in numerous proteins, for example the lipoproteins lpqQ, lprH, lppH and lpqA from M. tuberculosis. This family of proteins is found in bacteria. Proteins in this family are typically between 214 and 268 amino acids in length. There are two completely conserved C residues that are likely to form a disulphide bond. A second pair of cysteines are less well conserved probably form a second disulphide bond. It seems likely that this domain functions to bind some as yet unknown ligand.	4.64725e-19
NZ_CP009449.1|WP_003404335.1|916901_917294_-|transcriptional-regulator	gnl|CDD|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	9.15024e-22
NZ_CP009449.1|WP_010950453.1|926358_927081_-|hypothetical-protein	gnl|CDD|227186	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction only].	2.67323e-113
NZ_CP009449.1|WP_003404373.1|929731_930544_+|class-I-SAM-dependent-methyltransferase	gnl|CDD|316372	pfam13847, Methyltransf_31, Methyltransferase domain. This family appears to have methyltransferase activity.	8.13208e-31
NZ_CP009449.1|WP_003404349.1|918130_919036_+|SAM-dependent-methyltransferase	gnl|CDD|225852	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism].	4.29544e-95
NZ_CP009449.1|WP_003404368.1|927151_928180_-|hypothetical-protein	gnl|CDD|227198	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown].	5.33791e-171
NZ_CP009449.1|WP_003404336.1|917351_917774_-|nucleoside-deaminase	gnl|CDD|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	8.91868e-24
NZ_CP009449.1|WP_038438802.1|915794_916850_+|DUF2236-domain-containing-protein	gnl|CDD|226188	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown].	2.10133e-135
NZ_CP009449.1|WP_003404321.1|913894_914911_-|acyl-ACP-desaturase	gnl|CDD|153109	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 10 to yield oleic acid in the ACP-bound form. The enzymatic reaction requires molecular oxygen, NAD(P)H, NAD(P)H ferredoxin oxido-reductase and ferredoxin. The enzyme is active in the homodimeric form; the monomer consists mainly of alpha-helices with the catalytic diiron center buried within a four-helix bundle. Integral membrane fatty acid desaturases that introduce double bonds into fatty acid chains, acyl-CoA desaturases of animals, yeasts, and fungi, and acyl-lipid desaturases of cyanobacteria and higher plants, are distinct from soluble acyl-ACP desaturases, lack diiron centers, and are not included in this CD.	1.08695e-140
NZ_CP009449.1|WP_003900218.1|917735_918026_+|transposase	gnl|CDD|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.02344e-12
NZ_CP009449.1|WP_003404370.1|928868_929645_+|D-Ala-D-Ala-dipeptidase-VanX	gnl|CDD|279735	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase.	1.3086e-93
NZ_CP009449.1|WP_003404326.1|915072_915714_-|TetR/AcrR-family-transcriptional-regulator	gnl|CDD|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.60489e-08
NZ_CP009449.1|WP_003404376.1|930611_931472_-|proline-iminopeptidase	gnl|CDD|188121	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase.	8.19399e-156
NZ_CP009449.1|WP_010950448.1|912637_913807_-|tRNA-dihydrouridine-synthase-DusB	gnl|CDD|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	4.12365e-166
NZ_CP009449.1|WP_003404352.1|919054_919870_-|TIGR04255-family-protein	gnl|CDD|275082	TIGR04255, hypothetical_protein, TIGR04255 family protein. Members of this uncharacterized protein family are found broadly but sporadically among bacteria and archaea, including members of the genera Mycobacterium, Nostoc, Acinetobacter, Planctomyces, Geobacter, Streptomyces, Methanospirillum, etc. The function is unknown.	1.96412e-45

Protein sequences

>NZ_CP009449.1|WP_003404355.1|921826_922006_+|hypothetical-protein
MIDDRHKSTRRTCNHGGITWRVAATSARSARSLATTHPEAGHYGLATWFTRMDAMTAPT
>NZ_CP009449.1|WP_003404352.1|919054_919870_-|TIGR04255-family-protein
MLPETNQDEVQPNAPVALVTVEIRHPTTDSLTESANRELKHLLINDLPIERQAQDVSWGMTAPGGAPTPVADRFVRYVNRDNTTAASLKNQAIVVETTAYRSFEAFTDVVMRVVDARAQVSSIVGLERIGLRFVLEIRVPAGVDGRITWSNWIDEQLLGPQRFTPGGLVLTEWQGAAVYRELQPGKSLIVRYGPGMGQALDPNYHLRRITPAQTGPFFLLDIDSFWTPSGGSIPEYNRDALVSTFQDLYGPAQVVFQEMITSRLKDELLRQ
>NZ_CP009449.1|WP_003404349.1|918130_919036_+|SAM-dependent-methyltransferase
MVRADRDRWDLATSVGATATMVAAQRALAADPRYALIDDPYAAPLVRAVGMDVYTRLVDWQIPVEGDSEFDPQRMATGMACRTRFFDQFFLDATHSGIGQFVILASGLDARAYRLAWPVGSIVYEVDMPEVIEFKTATLSDLGAEPATERRTVAVDLRDDWATALQTAGFDPKVPAAWSAEGLLVYLPVEAQDALFDNITALSAPGSRLAFEFVPDTAIFADERWRNYHNRMSELGFDIDLNELVYHGQRGHVLDYLTRDGWQTSALTVTQLYEANGFAYPDDELATAFADLTYSSATLMR
>NZ_CP009449.1|WP_003900218.1|917735_918026_+|transposase
MGPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRGADRKTGPGPAGGREARKGTGHPAGEQPRDGVLVA
>NZ_CP009449.1|WP_003404336.1|917351_917774_-|nucleoside-deaminase
MPAGMAGFRRWAQTNDPTAHAESLAIRAACTKLGTEHLVGTTLNVLAHPCPMCYGSLYYCSPDEVVFLTSRDAYEPHYVDDRRYFEPATFYDEFAKEWQDRRLPMRQEHRPDIRAGAVDVYRFRQEPNGGERSAIAAPTG
>NZ_CP009449.1|WP_003404335.1|916901_917294_-|transcriptional-regulator
MYADSGPDPLPDDQVCLVVEVFRMLADATRVQVLWSLADREMSVNELAEQVGKPAPSVSQHLAKLRMARLVRTRRDGTTIFYRLENEHVRQLVIDAVFNAEHAGPGIPRHHRAAGGLQSVAKASATKDVG
>NZ_CP009449.1|WP_038438802.1|915794_916850_+|DUF2236-domain-containing-protein
MTQDTSATCPLTSTVQDSSPVAGQLGRPIGFRGLAGGCPVSPLGYESPPLPLGPDSLTWRYFGDWRGMLQGPWAGSMQNMHPQLGAAVEDHSTFFRGRWPRLLRSLYPIGGVVFDGDRAPVTGVQVRDYHITIKGVDGAGRRYHALNPDVFYWAHATFFVGTLHVAERFCGGLTEAQRRQLFDEHVQWYRMYGMSMRPVPATWEEFQDYWDHMCRNVLENNFAARAVLDLTELPKPPFAQRVPDWLWAAPRKLLARFFVWLTVGLYDPPVRELMGYRWLRRDEWLHRRFGDIVQLVFALVPFRFRKHPRARAGWDRATGRTPADAPLVQTPARNLPPPDERDNPTHYCPKV
>NZ_CP009449.1|WP_003404326.1|915072_915714_-|TetR/AcrR-family-transcriptional-regulator
MQTGQNRGRWSGVPLESRHALRRDNLVAAGVQLLGGAGGPALTVRAVCRHAGLTERYFYESFADREHFVRAVYDDVCTRAMATLTSAQTPREAVEQFVELMVDDPVRGRVLLLAPAVEPALTRSGAEWMPNFIELLQRKLSRIVDPVLQKLVATSLIGALTGLFTAYLNGRLGATRKQFIDYCVNMLLSTAATYAPHRERGESEHSIPAGPHN
>NZ_CP009449.1|WP_003404321.1|913894_914911_-|acyl-ACP-desaturase
MSAKLTDLQLLHELEPVVEKYLNRHLSMHKPWNPHDYIPWSDGKNYYALGGQDWDPDQSKLSDVAQVAMVQNLVTEDNLPSYHREIAMNMGMDGAWGQWVNRWTAEENRHGIALRDYLVVTRSVDPVELEKLRLEVVNRGFSPGQNHQGHYFAESLTDSVLYVSFQELATRISHRNTGKACNDPVADQLMAKISADENLHMIFYRDVSEAAFDLVPNQAMKSLHLILSHFQMPGFQVPEFRRKAVVIAVGGVYDPRIHLDEVVMPVLKKWRIFEREDFTGEGAKLRDELALVIKDLELACDKFEVSKQRQLDREARTGKKVSAHELHKTAGKLAMSRR
>NZ_CP009449.1|WP_010950448.1|912637_913807_-|tRNA-dihydrouridine-synthase-DusB
MSRRRAIQPSPALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGCGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLHGFPAGSALRRALAMVKTLDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTDPDDCRVPEGADAMGSGG
>NZ_CP009449.1|WP_010950452.1|925101_925746_+|sensor-domain-containing-protein
MCCSTAAKSAVIVCCAAIATTACSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEELAAHFQTDLREPPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVETVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILGRPDASTVRIGAAGWSHVYRLKSSVFISVGVLGIEPAEPIANVILQTISDRIQ
>NZ_CP009449.1|WP_003898607.1|925726_926278_-|hypothetical-protein
MKAATSWMQQQVLATATVVRWRLAWLSKPETWRRRKRRQSQKIRRSVQKQRRSTVWDNQRKTFGVVISPARLTAWIAASALILLTGTELFGTALSWVKLSPIWHVFSFAVDTRPIATLLDYASHPIDPRSYSSVAVTAVGAEATLLAFFFATVGVVASTALNTLRSSPPLLLSSPRLTTGCDR
>NZ_CP009449.1|WP_010950453.1|926358_927081_-|hypothetical-protein
MLVGAQCRDLLHWRFCRGVPPRATNDTDIAGTLNNWDHFEAIRATFRALGSTGHRFLIADRAVDALPFGEVESPTGTTRHPPGNQLMNVHGCTDAYLRADVLPLPGGLTVHLPQPPNYAVLKLHAWLDRSADHDYKDGPDLALVVHWYAGDLDRLYAKPDQWALRRHDFDLRTAAAALLGHDMRASVSAPEAAVLATRATQADHDLLAQHFAVGRPGWPTTTASRRPLVEALLDQLTPGS
>NZ_CP009449.1|WP_003404368.1|927151_928180_-|hypothetical-protein
MDQIGADLAEAVERHLTEYGVRVLGGLSALNSAHPESLDLEIDAHPLTITALYLPHLSATAALQAWDTAGAGSPLLVVGPRLHPSSAETLRARGLWYIDGAGNAYLRHQGGLLIDVRGRRSAVSAQPGTLGDGLHSDGPRNPFTPKRAQVVCVLLDAPQLVDAPLRAIAASAGVSVGMAKETMDTLRTTGFFEHLGSRRRLVRTDELLDLWAAAYPGGLGRANKLLVASGDIHTWSAPDGLAVAVSGEQALPDEIRNPESLMLYVDTPAPGLPADLLIHNRWHRDPHGSIVIRKLFWRNLPDEQPGLAPTALIYADLLASREPRQVEVAHLMRRQDERLARL
>NZ_CP009449.1|WP_003907492.1|928441_928630_-|hypothetical-protein
MIGISYFVMTQLEAAVERRSRRSSRCGDRRPLDGANHHGLLGSSFLAPARPDLQAQRQALAQ
>NZ_CP009449.1|WP_003907493.1|928648_928918_-|hypothetical-protein
MTTSPTMSRRSRPIRRTRSLSRIVAPRAHRREFADADRPGVPEMSTPNHRPTQHGWHRDCLARRRLDSSLLVPWPRRHRDLVEWVAAAR
>NZ_CP009449.1|WP_003404370.1|928868_929645_+|D-Ala-D-Ala-dipeptidase-VanX
MRLIGRLRLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEAARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFDGPGPGAGVDRPILEVPVD
>NZ_CP009449.1|WP_003404373.1|929731_930544_+|class-I-SAM-dependent-methyltransferase
MNDKRRAIYTHGYHESVLRSHRRRTAENSAGYLLPYLVPGLSVLDVGCGPGTITVDLAARVVPGSVTGVEPTDDALSLARAEAQLHRLSNISFTTSDVHKLDFPDDAFDVVHAHQVLQHVADPVRALQEMRRVCTPGGIVAARDADYSGFIWFPKLPALDRWLDLYERAARANGGEPDAGRRLLSWARAAGFDDVTPTASVWCFATASAREWWGLVWADRILQSDLAHQLVDSGLATAAQLEEISTAWREWAAAPDGWLAIPHGEILCRA
>NZ_CP009449.1|WP_003404376.1|930611_931472_-|proline-iminopeptidase
MEGTIAVPGGRVWFQRIGGGPGRPLLVVHGGPGLPHNYLAPLRRLSDEREVIFWDQLGCGNSACPSDVDLWTMNRSVAEMATVAEALALTRFHIFSHSWGGMLAQQYVLDKAPDAVSLTIANSTASIPEFSASLVSLKSCLDVATRSAIDRHEAAGTTHSAEYQAAIRTWNETYLCRTRPWPRELTEAFANMGTEIFETMFGPSDFRIVGNVRDWDVVDRLADIAVPTLLVVGRFDECSPEHMREMQGRIAGSRLEFFESSSHMPFIEEPARFDRVMREFLRLHDI
>NZ_CP009449.1|WP_003907494.1|931559_931823_+|hypothetical-protein
MSVSDGAVETRRPEAVWVDRQYRSRSYRRTRLLLAGRSGVPVHTALGFTVAVAVCTPGETPGSWLRPASCTTALRRPTAVATTESGR

Crispr_ID: NZ_CP009449_4

• CRISPR_ID: NZ_CP009449_4
• CRISPR_location: 2021391-2022018
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 11 spacers

Consensus repeat of NZ_CP009449_4

Consensus_repeat	Method
CCGGCGCCGCCGGCCCCGCCGTTGCCGA	CRISPRCasFinder
CGGCCCCGCCGGCGCCGCCGGCCCCGCCGTTGCCGAACA	PILER-CR

spacers of NZ_CP009449_4

>4.1|2021419|17|NZ_CP009449|CRISPRCasFinder
TAGGTGTGCCACTCCCG
>4.2|2021464|17|NZ_CP009449|CRISPRCasFinder
CCAGGATGGCACCGCCG
>4.3|2021509|32|NZ_CP009449|CRISPRCasFinder
CGGTGCCGTTTCCCCCGGCGCCGCCGTCCCCG
>4.4|2021569|23|NZ_CP009449|CRISPRCasFinder
CGACCCCACCGGCGCCCCCGGCA
>4.5|2021620|29|NZ_CP009449|CRISPRCasFinder
CGGCGCCGCCGGCACCAAACAGCAGGCCC
>4.6|2021677|29|NZ_CP009449|CRISPRCasFinder
CCACCCCGGTAGCGCCACCGCCGAGTGCG
>4.7|2021734|22|NZ_CP009449|CRISPRCasFinder
CCAGCCATTAGTGCCGGTGCCG
>4.8|2021784|33|NZ_CP009449|CRISPRCasFinder
AGAACAACCCGCCGTCTCCGCCGGCCACCACCG
>4.9|2021845|20|NZ_CP009449|CRISPRCasFinder
CGGCGCCGTAGAGCAGCCCG
>4.10|2021893|23|NZ_CP009449|CRISPRCasFinder
CGGTGCCGGACGCTACGTTCCCC
>4.11|2021944|26|NZ_CP009449|CRISPRCasFinder
ACAGGCCAGCGGCTCCGCCGTTGCCC
>4.12|2021900|22|NZ_CP009449|PILER-CR
AACCCTGCGGTGCCGGACGCTA
>4.13|2021961|33|NZ_CP009449|PILER-CR
GGCCAGCGGCTCCGCCGTTGCCCCCGGGCATGC

CRISPR arrays and Neighbor proteins around NZ_CP009449_4

CRISPR arrays

The CRISPR arrays of NZ_CP009449_4

>merge|NZ_CP009449|4|2021391-2022018|CRISPRCasFinder,PILER-CR
CCGGCACCGCCGGTGCCCGCGCTGCCGTTAGGTGTGCCACTCCCGGCGTTGCCGCCGTTGCCGCCGTTGCCGACCAGGATGGCACCGCCGCCAGCGCCGCCGTCACCGCCCTTGGCACCGGTGCCGTTTCCCCCGGCGCCGCCGTCCCCGCCGTCGCCGATCAGCCCGGCTTTGCCGCCGACCCCACCGGCGCCCCCGGCACCGCCGAAGCCGAATCCGCCGGCGCCGCCGGCGCCGCCGGCACCAAACAGCAGGCCCGCAGTGCCGCCGTTTCCGCCGGCGCCGCCCACCCCGGTAGCGCCACCGCCGAGTGCGCCGGCGGAAACGGCCCCACCGGCGCCTACCAGCCATTAGTGCCGGTGCCGCCGGCCCCGCCGGCACCGCCCACGCCGAAGAACAACCCGCCGTCTCCGCCGGCCACCACCGGCGCGTCCGCCGGCGCCGCCGGCCCCGCCGGCGCCGTAGAGCAGCCCGCCGGCCCCGCCGGCCCCGCCGAACCCTGCGGTGCCGGACGCTACGTTCCCCCCGGCGCCGCCGGCCCCGCCGTTGCCGAACAGGCCAGCGGCTCCGCCGTTGCCCCCGGGCATGCCGGCCGCGCCGGAGCCGCCGGCCCCGCCGTTGCCGATCA

>NZ_CP009449|4|2|2021391-2021997|CRISPRCasFinder
CCGGCACCGCCGGTGCCCGCGCTGCCGT	TAGGTGTGCCACTCCCG
GCGTTGCCGCCGTTGCCGCCGTTGCCGA	CCAGGATGGCACCGCCG
CCAGCGCCGCCGTCACCGCCCTTGGCAC	CGGTGCCGTTTCCCCCGGCGCCGCCGTCCCCG
CCGTCGCCGATCAGCCCGGCTTTGCCGC	CGACCCCACCGGCGCCCCCGGCA
CCGCCGAAGCCGAATCCGCCGGCGCCGC	CGGCGCCGCCGGCACCAAACAGCAGGCCC
GCAGTGCCGCCGTTTCCGCCGGCGCCGC	CCACCCCGGTAGCGCCACCGCCGAGTGCG
CCGGCGGAAACGGCCCCACCGGCGCCTA	CCAGCCATTAGTGCCGGTGCCG
CCGGCCCCGCCGGCACCGCCCACGCCGA	AGAACAACCCGCCGTCTCCGCCGGCCACCACCG
GCGCGTCCGCCGGCGCCGCCGGCCCCGC	CGGCGCCGTAGAGCAGCCCG
CCGGCCCCGCCGGCCCCGCCGAACCCTG	CGGTGCCGGACGCTACGTTCCCC
CCGGCGCCGCCGGCCCCGCCGTTGCCGA	ACAGGCCAGCGGCTCCGCCGTTGCCC
CCGGGCATGCCGGCCGCGCCGGAGCCGC

>NZ_CP009449|4|3|2021861-2022018|PILER-CR
CCCGCCGGCCCCGCCGGCCCCGCCGAACCCTGCGGTGCC	GGACGCTACGTTCCCCCCGGCG
CCGCCGGCCCCGCCGTTGCCGAACAGGCCAGCGGCTCCG	CCGTTGCCCCCGGGCATGCCGGCCGCGCCGGAG
CCGCCGGCCCCGCCGTTGCCGATCA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009449.1|WP_003409231.1|2030442_2030775_+|DUF1290-domain-containing-protein	unknown	unknown	gnl|CDD|226374
NZ_CP009449.1|WP_003409239.1|2032836_2033580_+|MerR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|133378
NZ_CP009449.1|WP_003899041.1|2032351_2032840_+|glycogen-accumulation-regulator-GarA	unknown	unknown	gnl|CDD|224630
NZ_CP009449.1|WP_010950611.1|2022564_2024484_-|multidrug-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|226646
NZ_CP009449.1|WP_003901262.1|2029457_2030381_+|DUF881-domain-containing-protein	unknown	unknown	gnl|CDD|226396
NZ_CP009449.1|WP_003409205.1|2018428_2019133_+|TetR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|379115
NZ_CP009449.1|WP_003899032.1|2013615_2014320_+|methyltransferase	unknown	unknown	gnl|CDD|224204
NZ_CP009449.1|WP_003409193.1|2014329_2015532_-|NADH-dehydrogenase	unknown	unknown	gnl|CDD|224172
NZ_CP009449.1|WP_003409221.1|2026212_2028639_+|accessory-Sec-system-translocase-SecA2	unknown	unknown	gnl|CDD|237060
NZ_CP009449.1|WP_080742903.1|2011454_2012018_+|PPE-family-protein	unknown	unknown	gnl|CDD|366325
NZ_CP009449.1|WP_003409204.1|2017700_2018366_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003409218.1|2024554_2026198_+|hypothetical-protein	unknown	unknown	gnl|CDD|235629
NZ_CP009449.1|WP_003409227.1|2028835_2029465_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl|CDD|223632
NZ_CP009449.1|WP_003409199.1|2015853_2016285_-|DUF4189-domain-containing-protein	unknown	unknown	gnl|CDD|372741
NZ_CP009449.1|WP_003409207.1|2019767_2021231_+|hypothetical-protein	unknown	unknown	gnl|CDD|180854
NZ_CP009449.1|WP_003899038.1|2030791_2031670_+|DUF881-domain-containing-protein	unknown	unknown	gnl|CDD|226396
NZ_CP009449.1|WP_003901259.1|2016693_2017596_+|C-5-sterol-desaturase	unknown	unknown	gnl|CDD|225546
NZ_CP009449.1|WP_003409234.1|2031707_2032112_+|glycine-cleavage-system-protein-H	unknown	unknown	gnl|CDD|234918
NZ_CP009449.1|WP_003409188.1|2013105_2013462_+|DUF732-domain-containing-protein	unknown	unknown	gnl|CDD|368380
NZ_CP009449.1|WP_072510852.1|2012048_2012867_+|PPE-family-protein	unknown	unknown	gnl|CDD|372141

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP009449.1|WP_003409231.1|2030442_2030775_+|DUF1290-domain-containing-protein	gnl|CDD|226374	COG3856, Sbp, Uncharacterized conserved protein (small basic protein) [Function unknown].	1.24966e-42
NZ_CP009449.1|WP_003409239.1|2032836_2033580_+|MerR-family-transcriptional-regulator	gnl|CDD|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	3.6505e-17
NZ_CP009449.1|WP_010950611.1|2022564_2024484_-|multidrug-ABC-transporter-ATP-binding-protein	gnl|CDD|226646	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only].	0
NZ_CP009449.1|WP_003901262.1|2029457_2030381_+|DUF881-domain-containing-protein	gnl|CDD|226396	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown].	2.39339e-84
NZ_CP009449.1|WP_003409205.1|2018428_2019133_+|TetR-family-transcriptional-regulator	gnl|CDD|379115	pfam13305, WHG, WHG domain. This presumed domain is around 80 amino acids in length. It is found to the C-terminus of a DNA-binding helix-turn-helix domain. This domain may be involved in binding to an as yet unknown ligand that allows a transcriptional regulation response to that molecule. The domain is named WHG after three conserved residues near the C-terminus of the domain.	2.04829e-11
NZ_CP009449.1|WP_003899032.1|2013615_2014320_+|methyltransferase	gnl|CDD|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	7.54596e-69
NZ_CP009449.1|WP_003409193.1|2014329_2015532_-|NADH-dehydrogenase	gnl|CDD|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	3.92596e-115
NZ_CP009449.1|WP_003409221.1|2026212_2028639_+|accessory-Sec-system-translocase-SecA2	gnl|CDD|237060	PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP009449.1|WP_080742903.1|2011454_2012018_+|PPE-family-protein	gnl|CDD|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	2.32217e-50
NZ_CP009449.1|WP_003899041.1|2032351_2032840_+|glycogen-accumulation-regulator-GarA	gnl|CDD|224630	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms].	3.81746e-35
NZ_CP009449.1|WP_003409218.1|2024554_2026198_+|hypothetical-protein	gnl|CDD|235629	PRK05858, PRK05858, acetolactate synthase.	0
NZ_CP009449.1|WP_003409227.1|2028835_2029465_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl|CDD|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	2.43578e-28
NZ_CP009449.1|WP_003409199.1|2015853_2016285_-|DUF4189-domain-containing-protein	gnl|CDD|372741	pfam13827, DUF4189, Domain of unknown function (DUF4189). This domain of unknown function contains six well-conserved cysteine residues.	4.20219e-12
NZ_CP009449.1|WP_003409207.1|2019767_2021231_+|hypothetical-protein	gnl|CDD|180854	PRK07121, PRK07121, FAD-binding protein.	0
NZ_CP009449.1|WP_003899038.1|2030791_2031670_+|DUF881-domain-containing-protein	gnl|CDD|226396	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown].	5.64423e-80
NZ_CP009449.1|WP_003901259.1|2016693_2017596_+|C-5-sterol-desaturase	gnl|CDD|225546	COG3000, ERG3, Sterol desaturase [Lipid metabolism].	1.47599e-56
NZ_CP009449.1|WP_003409234.1|2031707_2032112_+|glycine-cleavage-system-protein-H	gnl|CDD|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	1.93601e-64
NZ_CP009449.1|WP_003409188.1|2013105_2013462_+|DUF732-domain-containing-protein	gnl|CDD|368380	pfam05305, DUF732, Protein of unknown function (DUF732). This family consists of several uncharacterized Mycobacterium tuberculosis and leprae proteins of unknown function.	2.00134e-24
NZ_CP009449.1|WP_072510852.1|2012048_2012867_+|PPE-family-protein	gnl|CDD|372141	pfam12484, PE_PPE_C, Polymorphic PE/PPE proteins C terminal. This domain family is found in bacteria, and is approximately 90 amino acids in length. The family is found in association with pfam00823. There is a conserved SVP sequence motif. There is a single completely conserved residue W that may be functionally important. The proteins in this family are PE/PPE proteins implicated in immunostimulation and virulence.	1.80215e-09

Protein sequences

>NZ_CP009449.1|WP_003409207.1|2019767_2021231_+|hypothetical-protein
MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGLGFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDLLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNPDMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGIIVNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWETVVEMEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAHAAARAQGM
>NZ_CP009449.1|WP_003409205.1|2018428_2019133_+|TetR-family-transcriptional-regulator
MCQTCRVGKRRDAREQIEAKIVELGRRQLLDHGAAGLSLRAIARNLGMVSSAVYRYVSSRDELLTLLLVDAYSDLADTVDRARDDTVADSWSDDVIAIARAVRGWAVTNPARWALLYGSPVPGYHAPPDRTAGVATRVVGAFFDAIAAGIATGDIRLTDDVAPQPMSSDFEKIRQEFGFPGDDRVVTKCFLLWAGVVGAISLEVFGQYGADMLTDPGVVFDAQTRLLVAVLAEH
>NZ_CP009449.1|WP_003409204.1|2017700_2018366_+|hypothetical-protein
MVRLVPRAFAATVALLAAGFSPATASADPVLVFPGMEIRQDNHVCTLGYVDPALKIAFTAGHCRGGGAVTSRDYKVIGHLRAFRDNTPSGSTVATHELIADYEAIVLADDVTASNILPSGRALESRPGVVLHPGQAVCHFGVSTGETCGTVESVNNGWFTMSHGVLSEKGDSGGPVYLAPDGGPAQIVGIFNSVWGGFPAAVSWRSTSEQVHADLGVTPLA
>NZ_CP009449.1|WP_003901259.1|2016693_2017596_+|C-5-sterol-desaturase
MRDPVLFAIPCFLLLLILEWTAARKLESIETAATGQPRPASGAYLTRDSVASISMGLVSIATTAGWKSLALLGYAAIYAYLAPWQLSAHRWYTWVIAIVGVDLLYYSYHRIAHRVRLIWATHQAHHSSEYFNFATALRQKWNNSGEILMWVPLPLMGLPPWMVFCSWSLNLIYQFWVHTERIDRLPRWFEFVFNTPSHHRVHHGMDPVYLDKNYGGILIIWDRLFGSFQPELFRPHYGLTKRVDTFNIWKLQTREYVAIVRDWRSATRLRDRLGYVFGPPGWEPRTIDKSNAAASLVTSR
>NZ_CP009449.1|WP_003409199.1|2015853_2016285_-|DUF4189-domain-containing-protein
MITNLRRRTAMAAAGLGAALGLGILLVPTVDAHLANGSMSEVMMSEIAGLPIPPIIHYGAIAYAPSGASGKAWHQRTPARAEQVALEKCGDKTCKVVSRFTRCGAVAYNGSKYQGGTGLTRRAAEDDAVNRLEGGRIVNWACN
>NZ_CP009449.1|WP_003409193.1|2014329_2015532_-|NADH-dehydrogenase
MTRVVVIGSGFAGLWAALGAARRLDELAVPAGTVDVMVVSNKPFHDIRVRNYEADLSACRIPLGDVLGPAGVAHVTAEVTAIDADGRRVTTSTGASYSYDRLVLASGSHVVKPALPGLAEFGFDVDTYDGAVRLQQHLQGLAGGPLTSAAATVVVVGAGLTGIETACELPGRLHALFARGDGVTPRVVLIDHNPFVGSDMGLSARPVIEQALLDNGVETRTGVSVAAVSPGGVTLSSGERLAAATVVWCAGMRASRLTEQLPVARDRLGRLQVDDYLRVIGVPAMFAAGDVAAARMDDEHLSVMSCQHGRPMGRYAGCNVINDLFDQPLLALRIPWYVTVLDLGSAGAVYTEGWERKVVSQGAPAKTTKQSINTRRIYPPLNGSRADLLAAAAPRVQPRP
>NZ_CP009449.1|WP_003899032.1|2013615_2014320_+|methyltransferase
MQTLTVADFALRLAVGVGCGAIIGLERQWRARMAGLRTNALVATGATLFVLYAVATEDSSPTRVASYVVSGIGFLGGGVILREGFNVRGLNTAATLWCSAAVGVLAASGHLVFTLIGTGTIVAVHLLGRPLGRLVDRDNAVEDEGLQPYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAVHWYAGEHAQAE
>NZ_CP009449.1|WP_003409188.1|2013105_2013462_+|DUF732-domain-containing-protein
MQLQRTMGQCRPMRMLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHLEHHPS
>NZ_CP009449.1|WP_072510852.1|2012048_2012867_+|PPE-family-protein
MTTALSSAAAQFPFDIIPTLLQGLATLSTQYTQLMGQLINAIFGPTGATTYQNLFVTAANVTKFSTWANDAMSAPNLGMTEFKVFWQPPPAPEIPKSSLGAGLGLRSGLSAGLAHAASAGLGQANLVGDLSVPPSWASATPAVRLVANTLPATSLAAAPATQIPANLLGQMALGSMTGGALGAAAPAIYTGSGARARANGGTPSAEPVKLEAVIAQLQKQPDAVRHWNVDKADLDGLLDRLSKQPGIHAVHVSNGDKPKVALPDTQLGSHST
>NZ_CP009449.1|WP_080742903.1|2011454_2012018_+|PPE-family-protein
MDFGLQPPEITSGEMYLGPGAGPMLAAAVAWDGLAAELQSMAASYASIVEGMASESWLGPSSAGMAAAAAPYVTWMSGTSAQAKAAADQARAAVVAYETAFAAVGPPPQIAANRSQLISLVATNIFGQNTAAIAATEAEYGEMWAQDTMAMFGYASSSATASRLTPFTAPPQTTNPSGLAGQAAATG
>NZ_CP009449.1|WP_010950611.1|2022564_2024484_-|multidrug-ABC-transporter-ATP-binding-protein
MGPKLFKPSIDWSRAFPDSVYWVGKAWTISAICVLAILVLLRYLTPWGRQFWRITRAYFVGPNSVRVWLMLGVLLLSVVLAVRLNVLFSYQGNDMYTALQKAFEGIASGDGTVKRSGARGFWMSIGVFSVMAVLHVTRVMADIYLTQRFIIAWRVWLTHHLTQDWLDGRAYYRDLFIDETIDNPDQRIQQDVDIFTAGAGGTPNAPSNGTASTLLFGAVQSIISVISFTAILWNLSGTLNIFGVSIPRAMFWTVLVYVFVATVISFIIGRPLIWLSFRNEKLNAAFRYALVRLRDAAEAVGFYRGERVEGTQLQRRFTPVIDNYRRYVRRSIAFNGWNLSVSQTIVPLPWVIQAPRLFAGQIDFGDVGQTATSFGNIHDSLSFFRNNYDAFASFRAAIIRLHGLVDANEKGRALPAVLTRPSDDESVELNDIEVRTPAGDRLIDPLDVRLDRGGSLVITGRSGAGKTTLLRSLAELWPYASGTLHRPGGENETMFLSQLPYVPLGTLRDVVCYPNSAAAIPDATLRDTLTKVALAPLCDRLDEERDWAKVLSPGEQQRVAFARILLTKPKAVFLDESTSALDTGLEFALYQLLRSELPDCIVVSVSHRPALERLHENQLELLGGGQWRLAPVEAAPAEV
>NZ_CP009449.1|WP_003409218.1|2024554_2026198_+|hypothetical-protein
MSTDTAPAQTMHAGRLIARRLKASGIDTVFTLSGGHLFSIYDGCREEGIRLIDTRHEQTAAFAAEGWSKVTRVPGVAALTAGPGITNGMSAMAAAQQNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPVARFAATAQSAENAGLLVDQALQAAVSAPSGVAFVDFPMDHAFSMSSDNGRPGALTELPAGPTPAGDALDRAAGLLSTAQRPVIMAGTNVWWGHAEAALLRLVEERHIPVLMNGMARGVVPADHRLAFSRARSKALGEADVALIVGVPMDFRLGFGGVFGSTTQLIVADRVEPAREHPRPVAAGLYGDLTATLSALAGSGGTDHQGWIEELATAETMARDLEKAELVDDRIPLHPMRVYAELAALLERDALVVIDAGDFGSYAGRMIDSYLPGCWLDSGPFGCLGSGPGYALAAKLARPQRQVVLLQGDGAFGFSGMEWDTLVRHNVAVVSVIGNNGIWGLEKHPMEALYGYSVVAELRPGTRYDEVVRALGGHGELVSVPAELRPALERAFASGLPAVVNVLTDPSVAYPRRSNLA
>NZ_CP009449.1|WP_003409221.1|2026212_2028639_+|accessory-Sec-system-translocase-SecA2
MNVHGCPRIAACRCTDTHPRGRPAFAYRWFVPKTTRAQPGRLSSRFWRLLGASTEKNRSRSLADVTASAEYDKEAADLSDEKLRKAAGLLNLDDLAESADIPQFLAIAREAAERRTGLRPFDVQLLGALRMLAGDVIEMATGEGKTLAGAIAAAGYALAGRHVHVVTINDYLARRDAEWMGPLLDAMGLTVGWITADSTPDERRTAYDRDVTYASVNEIGFDVLRDQLVTDVNDLVSPNPDVALIDEADSVLVDEALVPLVLAGTTHRETPRLEIIRLVAELVGDKDADEYFATDSDNRNVHLTEHGARKVEKALGGIDLYSEEHVGTTLTEVNVALHAHVLLQRDVHYIVRDDAVHLINASRGRIAQLQRWPDGLQAAVEAKEGIETTETGEVLDTITVQALINRYATVCGMTGTALAAGEQLRQFYQLGVSPIPPNKPNIREDEADRVYITTAAKNDGIVEHITEVHQRGQPVLVGTRDVAESEELHERLVRRGVPAVVLNAKNDAEEARVIAEAGKYGAVTVSTQMAGRGTDIRLGGSDEADHDRVAELGGLHVVGTGRHHTERLDNQLRGRAGRQGDPGSSVFFSSWEDDVVAANLDHNKLPMATDENGRIVSPRTGSLLDHAQRVAEGRLLDVHANTWRYNQLIAQQRAIIVERRNTLLRTVTAREELAELAPKRYEELSDKVSEERLETICRQIMLYHLDRGWADHLAYLADIRESIHLRALGRQNPLDEFHRMAVDAFASLAADAIEAAQQTFETANVLDHEPGLDLSKLARPTSTWTYMVNDNPLSDDTLSALSLPGVFR
>NZ_CP009449.1|WP_003409227.1|2028835_2029465_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MEPVLTQNRVLTVPNMLSVIRLALIPAFVYVVLSAHANGWGVAILVFSGVSDWADGKIARLLNQSSRLGALLDPAVDRLYMVTVPIVFGLSGIVPWWFVLTLLTRDALLAGTLPLLWSRGLSALPVTYVGKAATFGFMVGFPTILLGQCDPLWSHVLLACGWAFLIWGMYAYLWAFVLYAVQMTMVVRQMPKLKGRAHRPAAQNAGERG
>NZ_CP009449.1|WP_003901262.1|2029457_2030381_+|DUF881-domain-containing-protein
MAESDRLLGGYDPNAGYSAHAGAQPQRIPVPSLLRALLSEHLDAGYAAVAAERERAAAPRCWQARAVSWMWQALAATLVAAVFAAAVAQARSVAPGVRAAQQLLVASVRSTQAAATTLAQRRSTLSAKVDDVRRIVLADDAEGQRLLARLDVLSLAAASAPVVGPGLTVTVTDPGASPNLSDVSKQRVSGSQQIILDRDLQLVVNSLWESGAEAISIDGVRIGPNVTIRQAGGAILVDNNPTSSPYTILAVGPPHAMQDVFDRSAGLYRLRLLETSYGVGVSVNVGDGLALPAGATRDVKFAKQIGP
>NZ_CP009449.1|WP_003409231.1|2030442_2030775_+|DUF1290-domain-containing-protein
MIGIAALAVGIVLGLVFHPGVPEVIQPYLPIAVVAALDAVFGGLRAYLERIFDPKVFVVSFVFNVLVAALIVYVGDQLGVGTQLSTAIIVVLGIRIFGNTAALRRRLFGA
>NZ_CP009449.1|WP_003899038.1|2030791_2031670_+|DUF881-domain-containing-protein
MSENRPEPVAAETSAATTARHSQADAGAHDAVRRGRHELPADHPRSKVGPLRRTRLTEILRGGRSRLVFGTLAILLCLVLGVAIVTQVRQTDSGDSLETARPADLLVLLDSLRQREATLNAEVIDLQNTLNALQASGNTDQAALESAQARLAALSILVGAVGATGPGVMITIDDPGPGVAPEVMIDVINELRAAGAEAIQINDAHRSVRVGVDTWVVGVPGSLTVDTKVLSPPYSILAIGDPPTLAAAMNIPGGAQDGVKRVGGRMVVQQADRVDVTALRQPKQHQYAQPVK
>NZ_CP009449.1|WP_003409234.1|2031707_2032112_+|glycine-cleavage-system-protein-H
MSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSAVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLLDAEAYRGTLTE
>NZ_CP009449.1|WP_003899041.1|2032351_2032840_+|glycogen-accumulation-regulator-GarA
MTDMNPDIEKDQTSDEVTVETTSVFRADFLSELDAPAQAGTESAVSGVEGLPPGSALLVVKRGPNAGSRFLLDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLENNEFNVVDVGSLNGTYVNREPVDSAVLANGDEVQIGKFRLVFLTGPKQGEDDGSTGGP
>NZ_CP009449.1|WP_003409239.1|2032836_2033580_+|MerR-family-transcriptional-regulator
MSAPDSPALAGMSIGAVLDLLRPDFPDVTISKIRFLEAEGLVTPRRASSGYRRFTAYDCARLRFILTAQRDHYLPLKVIRAQLDAQPDGELPPFGSPYVLPRLVPVAGDSAGGVGSDTASVSLTGIRLSREDLLERSEVADELLTALLKAGVITTGPGGFFDEHAVVILQCARALAEYGVEPRHLRAFRSAADRQSDLIAQIAGPLVKAGKAGARDRADDLAREVAALAITLHTSLIKSAVRDVLHR

Crispr_ID: NZ_CP009449_5

• CRISPR_ID: NZ_CP009449_5
• CRISPR_location: 2129175-2129300
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP009449_5

Consensus_repeat	Method
TGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	CRISPRCasFinder

spacers of NZ_CP009449_5

>5.1|2129223|30|NZ_CP009449|CRISPRCasFinder
GCGTCGGCAGATTGAACGCACCTAGCGCTG

CRISPR arrays and Neighbor proteins around NZ_CP009449_5

CRISPR arrays

The CRISPR arrays of NZ_CP009449_5

>merge|NZ_CP009449|5|2129175-2129300|CRISPRCasFinder
TGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCAGCGTCGGCAGATTGAACGCACCTAGCGCTGTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA

>NZ_CP009449|5|3|2129175-2129300|CRISPRCasFinder
TGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	GCGTCGGCAGATTGAACGCACCTAGCGCTG
TGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009449.1|WP_003409577.1|2119660_2120068_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003409568.1|2117121_2117727_-|hypothetical-protein	unknown	unknown	gnl|CDD|224793
NZ_CP009449.1|WP_003409666.1|2132883_2134155_-|hypothetical-protein	unknown	unknown	gnl|CDD|273654
NZ_CP009449.1|WP_003409584.1|2120202_2122503_+|isocitrate-lyase	unknown	unknown	gnl|CDD|215482
NZ_CP009449.1|WP_003409654.1|2131982_2132846_+|membrane-protein	unknown	unknown	gnl|CDD|153249
NZ_CP009449.1|WP_003409685.1|2140032_2140806_+|hypothetical-protein	unknown	unknown	gnl|CDD|225897
NZ_CP009449.1|WP_003409667.1|2134426_2135542_+|lipoprotein	unknown	unknown	gnl|CDD|224594
NZ_CP009449.1|WP_003901285.1|2113628_2115851_-|catalase-peroxidase	unknown	unknown	gnl|CDD|237891
NZ_CP009449.1|WP_003409566.1|2116445_2117039_-|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	unknown	unknown	gnl|CDD|224793
NZ_CP009449.1|WP_003900434.1|2136909_2137290_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003409684.1|2139316_2139796_-|hypothetical-protein	unknown	unknown	gnl|CDD|370335
NZ_CP009449.1|WP_003899082.1|2131420_2131885_-|SRPBCC-family-protein	unknown	unknown	gnl|CDD|176863
NZ_CP009449.1|WP_003409686.1|2140809_2141577_-|short-chain-dehydrogenase	unknown	unknown	gnl|CDD|135631
NZ_CP009449.1|WP_003409680.1|2137446_2139309_+|nitrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|171527
NZ_CP009449.1|WP_003409570.1|2117826_2118831_-|oxidoreductase	unknown	unknown	gnl|CDD|176236
NZ_CP009449.1|WP_003904733.1|2127599_2127791_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_015385279.1|2122672_2127670_-|PPE-family-protein	unknown	unknown	gnl|CDD|366325
NZ_CP009449.1|WP_010950634.1|2135532_2136873_+|esterase	unknown	unknown	gnl|CDD|365903
NZ_CP009449.1|WP_003409574.1|2118930_2119683_+|MBL-fold-metallo-hydrolase	unknown	unknown	gnl|CDD|293840
NZ_CP009449.1|WP_003409564.1|2115888_2116341_-|transcriptional-repressor	unknown	unknown	gnl|CDD|223806

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP009449.1|WP_003409684.1|2139316_2139796_-|hypothetical-protein	gnl|CDD|370335	pfam09167, DUF1942, Domain of unknown function (DUF1942). Members of this family of bacterial proteins assume a beta-sandwich structure consisting of two antiparallel beta-sheets similar to an immunoglobulin-like fold, with an additional small, antiparallel beta-sheet. The longer-stranded beta-sheet is made up of four antiparallel beta-strands. The shorter-stranded beta-sheet consists of five beta-strands, four of these beta-strands form an antiparallel beta-sheet. The exact function of this family of proteins is unknown, though a putative role includes involvement in host-bacterial interactions involved in endocytosis or phagocytosis, possibly during bacterial internalisation.	3.87872e-58
NZ_CP009449.1|WP_003409568.1|2117121_2117727_-|hypothetical-protein	gnl|CDD|224793	COG1881, COG1881, Phospholipid-binding protein [General function prediction only].	1.29998e-51
NZ_CP009449.1|WP_003409584.1|2120202_2122503_+|isocitrate-lyase	gnl|CDD|215482	PLN02892, PLN02892, isocitrate lyase.	2.96208e-144
NZ_CP009449.1|WP_003409666.1|2132883_2134155_-|hypothetical-protein	gnl|CDD|273654	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled here are all bacterial. The IB subfamily includes the enzyme phosphoserine phosphatase (TIGR00338). Due to this relationship, several of these sequences have been annotated as "phosphoserine phosphatase related proteins," or "Phosphoserine phosphatase-family enzymes." There is presently no evidence that any of the enzymes in this model possess PSPase activity. OMNI|NTL01ML1250 is annotated as a "possible transferase," however this is due to the C-terminal domain found on this sequence which is homologous to a group of glycerol-phosphate acyltransferases (between trusted and noise to TIGR00530). A subset of these sequences including OMNI|CC1962, the Caulobacter crescentus CicA protein cluster together and may represent a separate equivalog. [Unknown function, Enzymes of unknown specificity].	4.7592e-11
NZ_CP009449.1|WP_003409685.1|2140032_2140806_+|hypothetical-protein	gnl|CDD|225897	COG3361, COG3361, Uncharacterized conserved protein [Function unknown].	4.52786e-127
NZ_CP009449.1|WP_003409667.1|2134426_2135542_+|lipoprotein	gnl|CDD|224594	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms].	8.61879e-60
NZ_CP009449.1|WP_003901285.1|2113628_2115851_-|catalase-peroxidase	gnl|CDD|237891	PRK15061, PRK15061, catalase/peroxidase.	0
NZ_CP009449.1|WP_003409566.1|2116445_2117039_-|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	gnl|CDD|224793	COG1881, COG1881, Phospholipid-binding protein [General function prediction only].	4.33831e-50
NZ_CP009449.1|WP_003899082.1|2131420_2131885_-|SRPBCC-family-protein	gnl|CDD|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	1.38133e-21
NZ_CP009449.1|WP_003409686.1|2140809_2141577_-|short-chain-dehydrogenase	gnl|CDD|135631	PRK05867, PRK05867, SDR family oxidoreductase.	8.21275e-152
NZ_CP009449.1|WP_003409680.1|2137446_2139309_+|nitrate-ABC-transporter-substrate-binding-protein	gnl|CDD|171527	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.	0
NZ_CP009449.1|WP_003409570.1|2117826_2118831_-|oxidoreductase	gnl|CDD|176236	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.67964e-153
NZ_CP009449.1|WP_003409654.1|2131982_2132846_+|membrane-protein	gnl|CDD|153249	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this suubgroup are such LPLATs as 2-acylglycerol O-acyltransferase (MGAT), and similar proteins.	5.30115e-64
NZ_CP009449.1|WP_015385279.1|2122672_2127670_-|PPE-family-protein	gnl|CDD|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	8.88592e-81
NZ_CP009449.1|WP_010950634.1|2135532_2136873_+|esterase	gnl|CDD|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	6.5097e-53
NZ_CP009449.1|WP_003409574.1|2118930_2119683_+|MBL-fold-metallo-hydrolase	gnl|CDD|293840	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	1.95555e-42
NZ_CP009449.1|WP_003409564.1|2115888_2116341_-|transcriptional-repressor	gnl|CDD|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	7.68153e-41

Protein sequences

>NZ_CP009449.1|WP_003904733.1|2127599_2127791_+|hypothetical-protein
MGSDPAPPNMRAELISGGNVEKFMAPTFPGCTEFMAAHQPAVGERRVARRYSAIFAAVCISPE
>NZ_CP009449.1|WP_015385279.1|2122672_2127670_-|PPE-family-protein
MNFSTLPPEINSALIFGGAGSEPMSAAAVAWDQLAMELASAAASFNSVTSGLVGESWLGPSSAAMAAAVAPYLGWLAAAAAQAQRSATQAAALVAEFEAVRAAMVQPALVAANRSDLVSLVFSNFFGQNAPAIAAIEAAYEQMWAIDVSVMSAYHAGASAVASALTPFTAPPQNLTDLPAQLAAAPAAVVTAAITSSKGVLANLSLGLANSGFGQMGAANLGILNLGSLNPGGNNFGLGNVGSNNVGLGNTGNGNIGFGNTGNGNIGFGLTGDNQQGFGGWNSGTGNIGLFNSGTGNIGIGNTGTGNFGIGNSGTSYNTGIGNTGQANTGFFNAGIANTGIGNTGNYNTGSFNLGSFNTGDFNTGSSNTGFFNPGNLNTGVGNTGNVNTGGFNSGNYSNGFFWRGDYQGLIGFSGTLTIPAAGLDLNGLGSVGPITIPSITIPEIGLGINSSGALVGPINVPPITVPAIGLGVSSSGALVGPINVPPITVPAIGLGVSSSGALVGPINVPPITVPAIGLGVSSSGALVGPINVPPITVPAIGLGVSSSGALVGPINVPPITLNSIGLELSAFQVINVGSISIPASPLAIGLFGVNPTVGSIGPGSISIQLGTPEIPAIPPFFPGFPPDYVTVSGQIGPITFLSGGYSLPAIPLGIDVGGGLGPFTVFPDGYSLPAIPLGIDVGGGLGPFTVFPDGYSLPAIPLGIDVGGGLGPFTVFPDGYSLPAIPLGIDVGGAIGPLTTPPITIPAIPLGIDVSGSLGPINIPIEIAGTPGFGNSTTTPSSGFFNSGTGGTSGFGNVGSGGSGFWNIAGNLGNSGFLNVGPLTSGILNFGNTVSGLYNTSTLGLATSAFHSGVGNTDSQLAGFMRNAAGGTLFNFGFANDGTLNLGNANLGDYNVGSGNVGSYNFGSGNIGNGSFGFGNIGSNNFGFGNVGSNNLGFANTGPGLTEALHNIGFGNIGGNNYGFANIGNGNIGFGNTGTGNIGIGLTGDNQVGFGALNSGSGNIGFFNSGNGNIGFFNSGNGNVGIGNSGNYNTGLGNVGNANTGLFNTGNVNTGIGNAGSYNTGSYNAGDTNTGDLNPGNANTGYLNLGDLNTGWGNIGDLNTGALISGSYSNGILWRGDYQGLIGYSDTLSIPAIPLSVEVNGGIGPIVVPDITIPGIPLSLNALGGVGPIVVPDITIPGIPLSLNALGGVGPIVVPDITIPGIPLSLNALGGVGPITVPGVPISRIPLTINIRIPVNITLNELPFNVAGIFTGYIGPIPLSTFVLGVTLAGGTLESGIQGFSVNPFGLNIPLSGATNAVTIPGFAINPFGLNVPLSGGTSPVTIPGFAINPFGLDVPLSGGTNAVTIPGFAINPFGLDVPLSGGTNAVTIPGFAINPFGLDVPLSGGTNAVTIPGFAINPFGLDVPLSGGTNAVTIPGFAINPFGLDVPLSGGTSPVTIPGFAINPFGLDVPLSGGTSPVTIPGFAINPFGLNVPLSGGTNAVTIPGFAINPFGLNVPLSGGTSPVTIPGFAINPFGLNVPLSGGTSPVTIPGFTIPGSPLNLTANGGLGPINITSAPGFGNSTTTPSSGFFNSGDGSASGFGNVGPGISGLWNQVPNALQGGVSGIYNVGQLASGVANLGNTVSGFNNTSTVGHLTAAFNSGVNNIGQMLLGFFSPGAGP
>NZ_CP009449.1|WP_003409584.1|2120202_2122503_+|isocitrate-lyase
MAIAETDTEVHTPFEQDFEKDVAATQRYFDSSRFAGIIRLYTARQVVEQRGTIPVDHIVAREAAGAFYERLRELFAARKSITTFGPYSPGQAVSMKRMGIEAIYLGGWATSAKGSSTEDPGPDLASYPLSQVPDDAAVLVRALLTADRNQHYLRLQMSERQRAATPAYDFRPFIIADADTGHGGDPHVRNLIRRFVEVGVPGYHIEDQRPGTKKCGHQGGKVLVPSDEQIKRLNAARFQLDIMRVPGIIVARTDAEAANLIDSRADERDQPFLLGATKLDVPSYKSCFLAMVRRFYELGVKELNGHLLYALGDSEYAAAGGWLERQGIFGLVSDAVNAWREDGQQSIDGIFDQVESRFVAAWEDDAGLMTYGEAVADVLEFGQSEGEPIGMAPEEWRAFAARASLHAARAKAKELGADPPWDCELAKTPEGYYQIRGGIPYAIAKSLAAAPFADILWMETKTADLADARQFAEAIHAEFPDQMLAYNLSPSFNWDTTGMTDEEMRRFPEELGKMGFVFNFITYGGHQIDGVAAEEFATALRQDGMLALARLQRKMRLVESPYRTPQTLVGGPRSDAALAASSGRTATTKAMGKGSTQHQHLVQTEVPRKLLEEWLAMWSGHYQLKDKLRVQLRPQRAGSEVLELGIHGESDDKLANVIFQPIQDRRGRTILLVRDQNTFGAELRQKRLMTLIHLWLVHRFKAQAVHYVTPTDDNLYQTSKMKSHGIFTEVNQEVGEIIVAEVNHPRIAELLTPDRVALRKLITKEA
>NZ_CP009449.1|WP_003409577.1|2119660_2120068_-|hypothetical-protein
MVLSRTSTGRVILVPTQLRFDRWFLPLAVPLGLGPKNSELWVGAGSLHVKMGWAFAADIPLTSITKAEATNARVYAAGVHFGFGRWLVNGSRKGLVALTIDPPEQAKMWKKSMTVRELWVSVTDPDALVTACTAK
>NZ_CP009449.1|WP_003409574.1|2118930_2119683_+|MBL-fold-metallo-hydrolase
MHFDWERLTDSVHRCRLPFCDVTVGLVRGRTGILLVDTGTTLGEATAIAADVKQIAGCQVTHVVLTHKHFDHVLGSSVFDQAEVFCAPEVVEYLRSATDRLREDALSYGADTAEVDRAIAALKPPQHGIYDAAVDLGDRTVTITHPGSGHTTADLVVVAPATGHADGPTVVFTGDLVEESADPDIDADSDLAAWPATLDRVLAIGGPDASYVPGHGKVVDAQFVRRQRAWLRTRASRQPRETPATLPCKR
>NZ_CP009449.1|WP_003409570.1|2117826_2118831_-|oxidoreductase
MRAVVITKHGDPSVLQVRQRPDPPPPGPGQLRVAVRAAGVNFADHLARVGLYPDAPKLPAVVGYEVAGTVEAVGDGVDPNRVGERVLAGTRFGGYCEIVNVAATDSVVLPDALSFEQGAAVPVNYATAWAALHGYGSLRAGERVLIHAAAGGVGIAAVQFAKAAKAEVHGTASPQKHQKLAEFGVDRAIDYRRDGWWQGLGPYDVVLDALGGTSLRRSYTLLRPGGRLVGYGISNMQHGEKRSMRRVAPHALSMLRGFNLMKQLEESKTVIGLNMLRLWDDRRTLEPWIAPLTKALNDGTILPIVHAIVPFAEAPEAHRILAARENVGKVVLVP
>NZ_CP009449.1|WP_003409568.1|2117121_2117727_-|hypothetical-protein
MTSTLHRTPLATAGLALVVALGGCGGGGGDSRETPPYVPKATTVDATTPAPAAEPLTIASPMFADGAPIPVQFSCKGANVAPPLTWSSPAGAAELALVVDDPDAVGGLYVHWIVTGIAPGSGSTADGQTPAGGHSVPNSGGRQGYFGPCPPAGTGTHHYRFTLYHLPVALQLPPGATGVQAAQAIAQAASGQARLVGTFEG
>NZ_CP009449.1|WP_003409566.1|2116445_2117039_-|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein
MAHAFHRFALAILGLALPVALVAYGGNGDSRKAAPLAPKAAALGRSMPETPTGDVLTISSPAFADGAPIPEQYTCKGANIAPPLTWSAPFGGALVVDDPDAPREPYVHWIVIGIAPGAGSTADGETPGGGISLPNSSGQPAYTGPCPPAGTGTHHYRFTLYHLPAVPPLAGLAGTQAARVIAQAATMQARLIGTYEG
>NZ_CP009449.1|WP_003409564.1|2115888_2116341_-|transcriptional-repressor
MSSVSSIPDYAEQLRTADLRVTRPRVAVLEAVNAHPHADTETIFGAVRFALPDVSRQAVYDVLHALTAAGLVRKIQPSGSVARYESRVGDNHHHIVCRSCGVIADVDCAVGEAPCLTASDHNGFLLDEAEVIYWGLCPDCSISDTSRSHP
>NZ_CP009449.1|WP_003901285.1|2113628_2115851_-|catalase-peroxidase
MPEQHPPITETTTGAASNGCPVVGHMKYPVEGGGNQDWWPNRLNLKVLHQNPAVADPMGAAFDYAAEVATIDVDALTRDIEEVMTTSQPWWPADYGHYGPLFIRMAWHAAGTYRIHDGRGGAGGGMQRFAPLNSWPDNASLDKARRLLWPVKKKYGKKLSWADLIVFAGNCALESMGFKTFGFGFGRVDQWEPDEVYWGKEATWLGDERYSGKRDLENPLAAVQMGLIYVNPEGPNGNPDPMAAAVDIRETFRRMAMNDVETAALIVGGHTFGKTHGAGPADLVGPEPEAAPLEQMGLGWKSSYGTGTGKDAITSGIEVVWTNTPTKWDNSFLEILYGYEWELTKSPAGAWQYTAKDGAGAGTIPDPFGGPGRSPTMLATDLSLRVDPIYERITRRWLEHPEELADEFAKAWYKLIHRDMGPVARYLGPLVPKQTLLWQDPVPAVSHDLVGEAEIASLKSQILASGLTVSQLVSTAWAAASSFRGSDKRGGANGGRIRLQPQVGWEVNDPDGDLRKVIRTLEEIQESFNSAAPGNIKVSFADLVVLGGCAAIEKAAKAAGHNITVPFTPGRTDASQEQTDVESFAVLEPKADGFRNYLGKGNPLPAEYMLLDKANLLTLSAPEMTVLVGGLRVLGANYKRLPLGVFTEASESLTNDFFVNLLDMGITWEPSPADDGTYQGKDGSGKVKWTGSRVDLVFGSNSELRALVEVYGADDAQPKFVQDFVAAWDKVMNLDRFDVR
>NZ_CP009449.1|WP_003899082.1|2131420_2131885_-|SRPBCC-family-protein
MSGRKFSFEVTKTSSAPAATLFRLVTDGGNWATWAKPIVAQSSWARRGDPAPGGIGAIRKLGMWPVFVQEETVEYEQDRRHVYKLVGARTPVQDYFGEVVLTPNASGGTDLRWSGSFTEKVRGTGPVMRAALGGAVRFFAGQLVKAAEREAVRR
>NZ_CP009449.1|WP_003409654.1|2131982_2132846_+|membrane-protein
MFPRWPQQAHNHEVSRADTVSVPRAPTQAEVAAVLRIMTPLRKVIKPKVYGIENVPTERALLVGNHNTLGLVDAPLLAAELWERGRIVRSLGDHAHFKIPGWRDALTRTGVVEGTREITSELMRRGELVIVFPGGAREVNKRKNERYKLVWKNRLGFARLAIQHGYPIVPFASVGAEHGIDIVLDNESPLLAPVQFLAEKLLGTKDGPALVRGVGLTPVPRPERQYYWFGEPIDTTEFMGQQADDNAARRVRERAAAAIEHGIELMLAERAADPNRSLVGRLLRSDA
>NZ_CP009449.1|WP_003409666.1|2132883_2134155_-|hypothetical-protein
MVRLIPSLLAMATVLGGVIGCSAHQPPTPASGCRQLDAFLKWHHGVREFLQSAIDANSRCTGTADGSARKVAIFDWDNTVVKNDIGYATNYYMLQHSLVLQPANQDWHAASRYLTDAAANALSVACGKVVPAGKPLPTGSNALCANEILSLLDGETTTGQPAFVGNNVRRLAGPYAWSNALSAGYTAEELAGFADQAKKQNLAADVGATQQVGTQQVDGYIRVYPQMKDLIGTLQAHGIDTWVVSASPEPIVKVWAGEVGLDDQHVVGVRSVADQSGKLTAHLVGCGGVRDGDDSVMTYLDGKRCWANQVIFGVTGPQAFNQLAADRRQVLAAGDSNSDATFVGDATVVSLVINRNQDDLMCRAYDGLFTRGGKWAINPMFIDPLPQHAPYVCGEAFINPDGSKQPVLRNDGTPIPDQVDSVF
>NZ_CP009449.1|WP_003409667.1|2134426_2135542_+|lipoprotein
MDSTVTASIRRMLGLLAATLLLGGCTGQHTTRTAASTTYTPHIKASSQDVLDGAINADEPGCSAAVGVEGKVIWSGVRGIADLASGAKITTDTVFDIASVSKQFTATAILLLVEAGKLTLDDPISQYVPELPDWAQTVTVEQLMHQTSGIPDYVALLAARGYQVSDRTIEAEARQALAAAPELQFKPGTRFDYSNSNYLLLGEIVHRASGQPLPEFLSAEIFQPLGLAMVVDPVGKVPNKAVSYEKGTGGNRSEYRVGNPAWEQIGDGGIQTTPSQLARWADNYRTGSVGGLKLLEAQLAGAVETEPGGGDRYGAGIVSRADGTLDHAGAWAGFVTAFHISSDRRTSVAISCNTDKPDPVAMADALGRLWM
>NZ_CP009449.1|WP_010950634.1|2135532_2136873_+|esterase
MDVAGLPRLAAGTQAAIIHGMAQPPSLLTTDNGLPFGVQGACDSRFTGVIRAFAGLYPGRKFGGGALSVYIDDRQVVDVWTGWSDRQGKVPWTADTGAMVFSATKGLAATVIHRLVDRGLLSYDAPVAEYWPEFGANGKSEVTVSDVLRHRSGLAHLKGVDKDEVMDHLLMEQKLAAAPLNRQHGKLAYHAVTYGWLLSGLARAVTGKGMRELFREELARPLNTDGIHLGRPPADSPTKAAQTLLPQAKVPTPLLDFIAPKVAGLSFSGLLGAVYFPGILSLLQDDMPFLDGEVPAVNGVVTARALAKTYGALANDGVIDGTRLLSSQAVRGLTGKSELWPDLNLGLPFTYHQGYQSSPVPGLLEGYGHIGLGGTIGWADPETGSAFGYVHNRLLTLLLFDIGSFAGLAALLNSAVVAARRDDPLEVPHFGAPYSEPRHEQAASGA
>NZ_CP009449.1|WP_003900434.1|2136909_2137290_-|hypothetical-protein
MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELGIPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVWLLVYEF
>NZ_CP009449.1|WP_003409680.1|2137446_2139309_+|nitrate-ABC-transporter-substrate-binding-protein
MNDGSRQELRVRSGLLQIEDCLDADGGIALPAGTTLISLIERNIKYVGDLVAYRYLDHARSAAGCALEVTWTQFGMRLAAIGAHVQRFAGPGDRVAILAPQGIDYVCGFYAAIKAGTVAVPLFAPELPGHAERLDTALRDSEPAVILTTAAAKNAVEGFLNNVPRLRKPTVLVIDQIPDREGELFVPVELDIDAVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLNRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPLRWIQALSEGSRTGRVVTAAPNFAYEWAAQRGLPAQGDDVDLSNVVLIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLLVATIDHAAEPTVVYLDPEQLGAGHATRVAPDAPNAVVHVSCGHVARSLWAVIVDPDTGPEAGAELPDGEIGEVWLQGDNVARGYWGRPEETRMTFGARLQSPLAEGSHADGSAIDDTWLRTGDLGVYLDGELYITGRIADLLTIDGRNHYPQDIEATAAEASPMVRRGYITAFTVPASDGDDRNQRLVIIAERAAGTSRSDPRPALDAIRAAVCNRHGLSVADLSFLPAGAIPRTTSGKLARQACRAQYLSGRLGVH
>NZ_CP009449.1|WP_003409684.1|2139316_2139796_-|hypothetical-protein
MKLTTMIKTAVAVVAMAAIATFAAPVALAAYPITGKLGSELTMTDTVGQVVLGWKVSDLKSSTAVIPGYPVAGQVWEATATVNAIRGSVTPAVSQFNARTADGINYRVLWQAAGPDTISGATIPQGEQSTGKIYFDVTGPSPTIVAMNNGMEDLLIWEP
>NZ_CP009449.1|WP_003409685.1|2140032_2140806_+|hypothetical-protein
MTAIPGPSGAEPGESRALAGYPVTPPALPRPVIFDQRWTDLTFIHWPVLPESVAGSYPPGTRPDVFADGMTYVGLVPFRMSSTKLGTALPIPYVGTFPETNVRLYSIDNAGRHGVLFRSLETARLTVVPLTRIGLGIPYAWSRMRMMRSGKHITYHSVRRWPRRGLRSLLTITIGDLVEPTPLEVWLTARWGAHTRKAGRTWWVPNEHKPWPLRAAEIAELNDELIDASGVQPTGDRLRALFSPGVHARFGRPCVVQ
>NZ_CP009449.1|WP_003409686.1|2140809_2141577_-|short-chain-dehydrogenase
MSVLDLFDLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINVPQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPYTEYQPLWEPKIPLGRLGRPEELAGLYLYLASEASSYMTGSDIVIDGGYTCP

Crispr_ID: NZ_CP009449_6

• CRISPR_ID: NZ_CP009449_6
• CRISPR_location: 3027638-3028996
• CRISPR_type: TypeIII
• Repeat_type: II-B,III-A
• Spacer_info: 18 spacers
• Cas_protein_info: cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6

Consensus repeat of NZ_CP009449_6

Consensus_repeat	Method
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	PILER-CR
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CRISPRCasFinder
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CRT

spacers of NZ_CP009449_6

>6.1|3027674|35|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT
ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC
>6.2|3027745|37|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT
CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT
>6.3|3027818|38|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT
GCGAGAATAAGATTGTCAGGCTGGTGCTGCGTTTCCGT
>6.4|3027892|36|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT
TTCGGGAGCATGCCGCAGCTGCGGATGGTTGTTCGA
>6.5|3027964|38|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT
GCGATAGTAAGATTGTCAGGCTGGTGCTGCGTTTCCGT
>6.6|3028038|43|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT
TTCGGGAGCATGCCGCAGCTGCGGATGTGGTGCTGGATTTCGA
>6.7|3028117|41|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT
ACGTTGGAAGCGTTTCGAGCGTACGGACTTTCCGGATGCAG
>6.8|3028194|38|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT
TTGCACTCCGACGGCGTGGGCGACGTGACCTCGCACCG
>6.9|3028268|37|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT
TGCGTCAAGTGCGGCGCCGCCGTCATGTCGGTGTCGA
>6.10|3028341|37|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT
TGCGTCAAGTGCGGCACCGCCGTCATGTCGGTGTCGA
>6.11|3028414|38|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT
TTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAA
>6.12|3028488|35|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT
TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA
>6.13|3028559|37|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT
CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT
>6.14|3028632|37|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT
GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGA
>6.15|3028705|36|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT
GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTG
>6.16|3028777|36|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT
CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA
>6.17|3028849|38|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT
CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG
>6.18|3028923|38|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT
ATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAG

CRISPR arrays and Neighbor proteins around NZ_CP009449_6

CRISPR arrays

The CRISPR arrays of NZ_CP009449_6

>merge|NZ_CP009449|6|3027638-3028996|PILER-CR,CRISPRCasFinder,CRT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACACTTGCGCGCACAACGCATCCGCCATCCACGGGGCGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAATGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACGCGAGAATAAGATTGTCAGGCTGGTGCTGCGTTTCCGTGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTTCGGGAGCATGCCGCAGCTGCGGATGGTTGTTCGAGTTTACGTCCCCTCTCGGGGTTTTGGGTCTGACGACGCGATAGTAAGATTGTCAGGCTGGTGCTGCGTTTCCGTGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTTCGGGAGCATGCCGCAGCTGCGGATGTGGTGCTGGATTTCGAGTTTACGTCCCCTCTCGGGGTTTTGGGTCTGACGACACGTTGGAAGCGTTTCGAGCGTACGGACTTTCCGGATGCAGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTTGCACTCCGACGGCGTGGGCGACGTGACCTCGCACCGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTGCGTCAAGTGCGGCGCCGCCGTCATGTCGGTGTCGAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTGCGTCAAGTGCGGCACCGCCGTCATGTCGGTGTCGAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCGGACTTGATCGACGCGAACCTGTCTGACGCGAACCTGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACGGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACGCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC

>NZ_CP009449|6|4|3027638-3028996|PILER-CR
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	GCGAGAATAAGATTGTCAGGCTGGTGCTGCGTTTCCGT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TTCGGGAGCATGCCGCAGCTGCGGATGGTTGTTCGA
GTTTACGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	GCGATAGTAAGATTGTCAGGCTGGTGCTGCGTTTCCGT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TTCGGGAGCATGCCGCAGCTGCGGATGTGGTGCTGGATTTCGA
GTTTACGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ACGTTGGAAGCGTTTCGAGCGTACGGACTTTCCGGATGCAG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TTGCACTCCGACGGCGTGGGCGACGTGACCTCGCACCG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TGCGTCAAGTGCGGCGCCGCCGTCATGTCGGTGTCGA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TGCGTCAAGTGCGGCACCGCCGTCATGTCGGTGTCGA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC

>NZ_CP009449|6|4|3027638-3028996|CRISPRCasFinder
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	GCGAGAATAAGATTGTCAGGCTGGTGCTGCGTTTCCGT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TTCGGGAGCATGCCGCAGCTGCGGATGGTTGTTCGA
GTTTACGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	GCGATAGTAAGATTGTCAGGCTGGTGCTGCGTTTCCGT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TTCGGGAGCATGCCGCAGCTGCGGATGTGGTGCTGGATTTCGA
GTTTACGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ACGTTGGAAGCGTTTCGAGCGTACGGACTTTCCGGATGCAG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TTGCACTCCGACGGCGTGGGCGACGTGACCTCGCACCG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TGCGTCAAGTGCGGCGCCGCCGTCATGTCGGTGTCGA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TGCGTCAAGTGCGGCACCGCCGTCATGTCGGTGTCGA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC

>NZ_CP009449|6|1|3027638-3028996|CRT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	GCGAGAATAAGATTGTCAGGCTGGTGCTGCGTTTCCGT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TTCGGGAGCATGCCGCAGCTGCGGATGGTTGTTCGA
GTTTACGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	GCGATAGTAAGATTGTCAGGCTGGTGCTGCGTTTCCGT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TTCGGGAGCATGCCGCAGCTGCGGATGTGGTGCTGGATTTCGA
GTTTACGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ACGTTGGAAGCGTTTCGAGCGTACGGACTTTCCGGATGCAG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TTGCACTCCGACGGCGTGGGCGACGTGACCTCGCACCG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TGCGTCAAGTGCGGCGCCGCCGTCATGTCGGTGTCGA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TGCGTCAAGTGCGGCACCGCCGTCATGTCGGTGTCGA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009449.1|WP_003414195.1|3024593_3025202_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003414288.1|3036352_3037261_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	COG1567_csm4gr5_CAS-III-A	gnl|CDD|224483
NZ_CP009449.1|WP_003414409.1|3042706_3043591_-|hypothetical-protein	unknown	unknown	gnl|CDD|225162
NZ_CP009449.1|WP_003899489.1|3023500_3023758_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003899488.1|3022112_3023267_+|transposase	unknown	unknown	gnl|CDD|366234
NZ_CP009449.1|WP_003414201.1|3026676_3027489_+|ATPase-AAA	unknown	unknown	gnl|CDD|225806
NZ_CP009449.1|WP_003414279.1|3032955_3033972_-|CRISPR-associated-endonuclease-Cas1	cas1	COG1518_cas1_CAS-I:CAS-II:CAS-III	gnl|CDD|272998
NZ_CP009449.1|WP_010950777.1|3023862_3024174_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003414285.1|3035228_3036356_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	COG1332_csm5gr7_CAS-III-A	gnl|CDD|224251
NZ_CP009449.1|WP_003414292.1|3037241_3037952_-|CRISPR-type-III-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl|CDD|187815
NZ_CP009449.1|WP_003900578.1|3020883_3021249_+|hypothetical-protein	unknown	unknown	gnl|CDD|379326
NZ_CP009449.1|WP_003904931.1|3041889_3042435_-|DUF1802-domain-containing-protein	unknown	unknown	gnl|CDD|226743
NZ_CP009449.1|WP_003414184.1|3021722_3021914_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003910937.1|3025966_3026680_+|integrase	unknown	unknown	gnl|CDD|378147
NZ_CP009449.1|WP_003414296.1|3037961_3038336_-|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	cd09647_csm2gr11_CAS-III-A	gnl|CDD|273844
NZ_CP009449.1|WP_003414181.1|3021321_3021726_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_010950780.1|3040767_3041712_-|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl|CDD|227838
NZ_CP009449.1|WP_003414276.1|3032613_3032955_-|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl|CDD|224262
NZ_CP009449.1|WP_010950778.1|3025272_3025953_+|transposase	unknown	unknown	gnl|CDD|379233
NZ_CP009449.1|WP_003900580.1|3038332_3040771_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	COG1353_cas10_CAS-III	gnl|CDD|187811

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP009449.1|WP_003414288.1|3036352_3037261_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	COG1567_csm4gr5_CAS-III-A	1.3e-98	324.8	0.0
NZ_CP009449.1|WP_003900580.1|3038332_3040771_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	COG1353_cas10_CAS-III	1.9e-238	788.5	0.0
NZ_CP009449.1|WP_003414296.1|3037961_3038336_-|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	cd09647_csm2gr11_CAS-III-A	2.1e-23	77.8	0.2
NZ_CP009449.1|WP_003414285.1|3035228_3036356_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	COG1332_csm5gr7_CAS-III-A	3.7e-129	426.3	0.0
NZ_CP009449.1|WP_003414279.1|3032955_3033972_-|CRISPR-associated-endonuclease-Cas1	cas1	COG1518_cas1_CAS-I:CAS-II:CAS-III	1e-108	357.9	0.0
NZ_CP009449.1|WP_003414276.1|3032613_3032955_-|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	5.6e-26	85.5	0.1
NZ_CP009449.1|WP_010950780.1|3040767_3041712_-|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	1.5e-103	340.7	0.1
NZ_CP009449.1|WP_003414292.1|3037241_3037952_-|CRISPR-type-III-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	6.2e-81	265.9	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP009449.1|WP_003414288.1|3036352_3037261_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl|CDD|224483	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.37381e-109
NZ_CP009449.1|WP_003414409.1|3042706_3043591_-|hypothetical-protein	gnl|CDD|225162	COG2253, COG2253, Uncharacterized conserved protein [Function unknown].	3.55008e-105
NZ_CP009449.1|WP_003899488.1|3022112_3023267_+|transposase	gnl|CDD|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.94329e-16
NZ_CP009449.1|WP_003414201.1|3026676_3027489_+|ATPase-AAA	gnl|CDD|225806	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion].	2.9818e-110
NZ_CP009449.1|WP_003414279.1|3032955_3033972_-|CRISPR-associated-endonuclease-Cas1	gnl|CDD|272998	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1. This model identifies CRISPR-associated protein Cas1, the most universal CRISPR system protein. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Cas1 is a metal-dependent DNA-specific endonuclease.	2.72742e-113
NZ_CP009449.1|WP_003414285.1|3035228_3036356_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl|CDD|224251	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.40728e-139
NZ_CP009449.1|WP_003414292.1|3037241_3037952_-|CRISPR-type-III-associated-RAMP-protein-Csm3	gnl|CDD|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	4.36536e-99
NZ_CP009449.1|WP_003904931.1|3041889_3042435_-|DUF1802-domain-containing-protein	gnl|CDD|226743	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown].	9.382e-85
NZ_CP009449.1|WP_003900580.1|3038332_3040771_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl|CDD|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	0
NZ_CP009449.1|WP_003900578.1|3020883_3021249_+|hypothetical-protein	gnl|CDD|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	0.00179041
NZ_CP009449.1|WP_003414296.1|3037961_3038336_-|type-III-A-CRISPR-associated-protein-Csm2	gnl|CDD|273844	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2. These proteins are found adjacent to a characteristic short, palidromic repeat cluster termed CRISPR, a probable mobile DNA element. This model represents the C-terminal domain of a minor family of CRISPR-associated protein from the Mtube subtype of CRISPR/Cas locus. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2.	4.56134e-21
NZ_CP009449.1|WP_003910937.1|3025966_3026680_+|integrase	gnl|CDD|378147	pfam09299, Mu-transpos_C, Mu transposase, C-terminal. Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology.	5.84025e-10
NZ_CP009449.1|WP_010950780.1|3040767_3041712_-|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	7.43814e-78
NZ_CP009449.1|WP_003414276.1|3032613_3032955_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|224262	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms].	3.66595e-25
NZ_CP009449.1|WP_010950778.1|3025272_3025953_+|transposase	gnl|CDD|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	5.94158e-07

Protein sequences

>NZ_CP009449.1|WP_003414201.1|3026676_3027489_+|ATPase-AAA
MMHKLISYYGFSRMPFGRDLAPGMLHRHSAHNEAVARIGWCIADRRIGVITGEVGAGKTVAVRAALASLDRSRHTVIYLPDPTVGVQGIHHRIVASLGGQPLTHHATLAPQAADALAAEQAERGRTPVVVVEEAHLLGYDQLEALRLLTNHDLDSSSPFACLLIGQPTLRRRMKLGVLAALDQRIGLRYAMPPMTDTNTGSYLRHHLKLAGRDDALFSDDAIGLIHQTSRGYPRAVNNLALQALVAAFAADKAIVDESTTRTAIAEVTAD
>NZ_CP009449.1|WP_003910937.1|3025966_3026680_+|integrase
MDAWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMGRAIPYHIGRHSHPKAKPETPTAPPKPSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK
>NZ_CP009449.1|WP_010950778.1|3025272_3025953_+|transposase
MAVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAFLDDHSRLVPGYRGPCRGHGAAGRRTAPGAGLPRRAQRGVCR
>NZ_CP009449.1|WP_003414195.1|3024593_3025202_+|hypothetical-protein
MVTVEADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQLRGPAGPVELCPRRSRCTGCGVTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERVEAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAVSGGRLLAPGWPGEWVQHESTLP
>NZ_CP009449.1|WP_010950777.1|3023862_3024174_+|hypothetical-protein
MTYAARDDTTLPKLLAQMRWVVLVDKRQLAVLLLENEGPVASATDPLDTRGDSDYENQPVDAVERLCRRLADQAVRQWGFMQGLKQKLGPGVDVRMKLVEWNR
>NZ_CP009449.1|WP_003899489.1|3023500_3023758_+|hypothetical-protein
MSNVLDAISTEHRPVIEQELENRNPALFDELRRTEKPTNEQSDAVIDVLSDALMKTFGPDWVPNDYGLKIERAIDAYLETWPIYR
>NZ_CP009449.1|WP_003899488.1|3022112_3023267_+|transposase
MVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKYLVVMLELWLPLVAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTEALATARHIDLQSLQPSINRLAKAK
>NZ_CP009449.1|WP_003414184.1|3021722_3021914_+|hypothetical-protein
MKTNPRYGPAFYSVMTVLFLALFVLNVCTHGSTLGLISTGGLAVLMGYIGYRGWSGKRHINRQ
>NZ_CP009449.1|WP_003414181.1|3021321_3021726_+|hypothetical-protein
MGRDNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWALMGMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANRMPHWAAGTLPDGFPARAVRTRT
>NZ_CP009449.1|WP_003900578.1|3020883_3021249_+|hypothetical-protein
MGALSRPAGSWVLRARHGEHRADPGAIAAGPGPTRPDPIPVLVLARLALDRQEQGTGLGGDLLLDALIRSVAGARHYGARALVVDAIDDRAAEFYGHHGFLPLEGRRLYRRISDIARALGV
>NZ_CP009449.1|WP_003414276.1|3032613_3032955_-|CRISPR-associated-endonuclease-Cas2
MPTRSREEYFNLPLKVDESSGTIGKMFVLVIYDISDNRRRASLAKILAGFGYRVQESAFEAMLTKGQLAKLVARIDRFAIDCDNIRIYKIRGVAAVTFYGRGRLVSAEEFVFF
>NZ_CP009449.1|WP_003414279.1|3032955_3033972_-|CRISPR-associated-endonuclease-Cas1
MVQLYVSDSVSRISFADGRVIVWSEELGESQYPIETLDGITLFGRPTMTTPFIVEMLKRERDIQLFTTDGHYQGRISTPDVSYAPRLRQQVHRTDDPAFCLSLSKRIVSRKILNQQALIRAHTSGQDVAESIRTMKHSLAWVDRSGSLAELNGFEGNAAKAYFTALGHLVPQEFAFQGRSTRPPLDAFNSMVSLGYSLLYKNIIGAIERHSLNAYIGFLHQDSRGHATLASDLMEVWRAPIIDDTVLRLIADGVVDTRAFSKNSDTGAVFATREATRSIARAFGNRIARTATYIKGDPHRYTFQYALDLQLQSLVRVIEAGHPSRLVDIDITSEPSGA
>NZ_CP009449.1|WP_003414285.1|3035228_3036356_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKRKSFEAFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGKPDGLPLFRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPGVNAIVGPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDNICYEMGQCELSIRRAE
>NZ_CP009449.1|WP_003414288.1|3036352_3037261_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MNSRLFRFDFDRTHFGDHGLESSTISCPADTLYSALCVEALRMGGQQLLGELVACSTLRLTDLLPYVGPDYLVPKPLHSVRSDGSSMQKKLAKKIGFLPAAQLGSFLDGTADLKELAARQTKIGVHAVSAKAAIHNGKKDADPYRVGYFRFELDAGLWLLATGSESELGLLTRLLKGISALGGERTSGFGAFNLTESEAPAALTPTVDAASLMTLTTSLPTDDELEAALAGATYRLVKRSGFVASSTYADMPLRKRDIYKFAAGSVFSRPFQGGILDVSLGGNHPVYSYARPLFLALPESAA
>NZ_CP009449.1|WP_003414292.1|3037241_3037952_-|CRISPR-type-III-associated-RAMP-protein-Csm3
MTTSYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSRQYGADTETFYRKPNEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAKTLTEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDFNAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEKLNHELAAV
>NZ_CP009449.1|WP_003414296.1|3037961_3038336_-|type-III-A-CRISPR-associated-protein-Csm2
MSVIQDDYVKQAEVIRGLPKKKNGFELTTTQLRVLLSLTAQLFDEAQQSANPTLPRQLKEKVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKYLDPKDK
>NZ_CP009449.1|WP_003900580.1|3038332_3040771_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MNPQLIEAIIGCLLHDIGKPVQRAALGYPGRHSAIGRAFMKKVWLRDSRNPSQFTDEVDEADIGVSDRRILDAISYHHSSALRTAAENGRLAADAPAYIAYIADNIAAGTDRRKADSDDGHGASTWDPDTPLYSMFNRFGSGTANLAFAPEMLDDRKPINIPSPRRIEFDKDRYAAIVNKLKAILVDLERSDTYLASLLNVLEATLSFVPSSTDASEVVDVSLFDHLKLTGALGACIWHYLQATGQSDFKSALFDKQDTFYNEKAFLLTTFDVSGIQDFIYTIHSSGAAKMLRARSFYLEMLTEHLIDELLARVGLSRANLNYSGGGHAYLLLPNTESARKSVEQFEREANDWLLENFATRLFIATGSVPLAANDLMRRPNESASQASNRALRYSGLYRELSEQLSAKKLARYSADQLRELNSRDHDGQKGDRECSVCHTVNRTVSADDEPKCSLCQALTAASSQIQSESRRFLLISDGATKGLPLPFGATLTFCSRADADKALQQPQTRRRYAKNKFFAGECLGTGLWVGDYVAQMEFGDYVKRASGIARLGVLRLDVDNLGQAFTHGFMEQGNGKFNTISRTAAFSRMLSLFFRQHINYVLARPKLRPITGDDPARPREATIIYSGGDDVFVVGAWDDVIEFGIELRERFHEFTQGKLTVSAGIGMFPDKYPISVMAREVGDLEDAAKSLPGKNGVALFDREFTFGWDELLSKVIEEKYRHIADYFSGNEERGMAFIYKLLELLAERDDRITKARWVYFLTRMRNPTGDTAPFQQFANRLHQWFQDPTDAKQLKTALHLYIYRTRKEESE
>NZ_CP009449.1|WP_010950780.1|3040767_3041712_-|CRISPR-associated-endoribonuclease-Cas6
MAARRGGIRRTDLLRRSGQPRGRHRASAAESGLTWISPTLILVGFSHRGDRRMTEPLSRLTLTLEVDAPLERARVATLGPHLHGVLMESIPADYVQTLHTVPVNPYSQYALARSTTSLEWKISTLTNEARQQIVGPINDAAFAGFRLRASGIATQVTSRSLEQNPLSQFARIFYARPETRKFRVEFLTPTAFKQSGEYVFWPDPRLVFQSLAQKYGAIVDGEEPDPGLIAEFGQSVRLSAFRVASAPFAVGAARVPGFTGSATFTVRGVDTFASYIAALLWFGEFSGCGIKASMGMGAIRVQPLAPREKCVPKP
>NZ_CP009449.1|WP_003904931.1|3041889_3042435_-|DUF1802-domain-containing-protein
MTPALKEWSAAVHALLDGRQTVLLRKGGIGEKRFEVAAHEFLLFPTVAHSHAERVRPEHRDLLGPAAADSTDECVLLRAAAKVVAALPVNRPEGLDAIEDLHIWTAESVRADRLDFRPKHKLAVLVVCAIPLAEPVRLARRPEYGGCTSWVQLPLTPQLAEPVHDEAALAEVAARVREAVG
>NZ_CP009449.1|WP_003414409.1|3042706_3043591_-|hypothetical-protein
MAGLTRALVARHALGRAEAYDAALLDVAQDHLLYLLSQTVQFGDNRLVFKGGTSLRKCRLGNVGRFSTDLDFSAPDDEVVLEVCELIDGARVGGFEFGVQSTRGDGRHWQLRVRHTELGEPRIVASVEFARRPLALPSELLAFIQLPIHKAYGFGLPTLPVVAEAEACAEKLARYRRVALARDLYDLNHFASRTIDEPLVRRLWVLKVWGDVVDDRRGTRPLRVEDVLAARSEHDFQPDSIGVLTRPVAMAAWEARVRKRFAFLTDLDADEQRWAACDERHRREVENALAVLRS

Crispr_ID: NZ_CP009449_7

• CRISPR_ID: NZ_CP009449_7
• CRISPR_location: 3030390-3031306
• CRISPR_type: TypeIII
• Repeat_type: II-B,III-A
• Spacer_info: 12 spacers
• Cas_protein_info: cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6

Consensus repeat of NZ_CP009449_7

Consensus_repeat	Method
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CRISPRCasFinder
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CRT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	PILER-CR

spacers of NZ_CP009449_7

>7.1|3030426|40|NZ_CP009449|CRISPRCasFinder,CRT
TCGCGGCGAGCACGTCTCACCCAGCAGGCGGTGAGGTTGG
>7.2|3030502|39|NZ_CP009449|CRISPRCasFinder,CRT,PILER-CR
ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG
>7.3|3030577|37|NZ_CP009449|CRISPRCasFinder,CRT,PILER-CR
TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA
>7.4|3030650|40|NZ_CP009449|CRISPRCasFinder,CRT,PILER-CR
TCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA
>7.5|3030726|41|NZ_CP009449|CRISPRCasFinder,CRT,PILER-CR
GTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA
>7.6|3030803|36|NZ_CP009449|CRISPRCasFinder,CRT,PILER-CR
CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA
>7.7|3030875|36|NZ_CP009449|CRISPRCasFinder,CRT,PILER-CR
CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG
>7.8|3030947|37|NZ_CP009449|CRISPRCasFinder,CRT,PILER-CR
CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG
>7.9|3031020|25|NZ_CP009449|CRISPRCasFinder,CRT
CGAAATTCACTGCGCGTTATTCAAG
>7.10|3031081|41|NZ_CP009449|CRISPRCasFinder,CRT
CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA
>7.11|3031158|36|NZ_CP009449|CRISPRCasFinder,CRT
ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA
>7.12|3031230|40|NZ_CP009449|CRISPRCasFinder,CRT
CACGGACAGCATGTCGGCATGCTGCATGCCCTAACGTCGT
>7.13|3031020|29|NZ_CP009449|PILER-CR
TCCGCGAAATTCACTGCGCGTTATTCAAG
>7.14|3031085|41|NZ_CP009449|PILER-CR
CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA

CRISPR arrays and Neighbor proteins around NZ_CP009449_7

CRISPR arrays

The CRISPR arrays of NZ_CP009449_7

>merge|NZ_CP009449|7|3030390-3031306|CRISPRCasFinder,CRT,PILER-CR
CATGCCGGGGCGGTTCAGGGTTTTGGGTCTGACGACTCGCGGCGAGCACGTCTCACCCAGCAGGCGGTGAGGTTGGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTCGACGATTGGGACATCGACATCGACGCGATCGTCGACGAGTTTCCGTCCTCTCTCGGGGTTTTGGGTCTGACGACGTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGATCCGCGAAATTCACTGCGCGTTATTCAAGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCACGGACAGCATGTCGGCATGCTGCATGCCCTAACGTCGTGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACC

>NZ_CP009449|7|5|3030390-3031306|CRISPRCasFinder
CATGCCGGGGCGGTTCAGGGTTTTGGGTCTGACGAC	TCGCGGCGAGCACGTCTCACCCAGCAGGCGGTGAGGTTGG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA
GTTTCCGTCCTCTCTCGGGGTTTTGGGTCTGACGAC	GTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGATCCG	CGAAATTCACTGCGCGTTATTCAAG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CACGGACAGCATGTCGGCATGCTGCATGCCCTAACGTCGT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACC

>NZ_CP009449|7|2|3030390-3031305|CRT
CATGCCGGGGCGGTTCAGGGTTTTGGGTCTGACGAC	TCGCGGCGAGCACGTCTCACCCAGCAGGCGGTGAGGTTGG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA
GTTTCCGTCCTCTCTCGGGGTTTTGGGTCTGACGAC	GTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGATCCG	CGAAATTCACTGCGCGTTATTCAAG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CACGGACAGCATGTCGGCATGCTGCATGCCCTAACGTCGT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC

>NZ_CP009449|7|5|3030466-3031157|PILER-CR
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA
GTTTCCGTCCTCTCTCGGGGTTTTGGGTCTGACGAC	GTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGATCCG	CGAAATTCACTGCGCGTTATTCAAGGTTT
CCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCCGA	GCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAAGTTT
CCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009449.1|WP_003414195.1|3024593_3025202_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003414288.1|3036352_3037261_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	COG1567_csm4gr5_CAS-III-A	gnl|CDD|224483
NZ_CP009449.1|WP_003414409.1|3042706_3043591_-|hypothetical-protein	unknown	unknown	gnl|CDD|225162
NZ_CP009449.1|WP_003899489.1|3023500_3023758_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003899488.1|3022112_3023267_+|transposase	unknown	unknown	gnl|CDD|366234
NZ_CP009449.1|WP_003414201.1|3026676_3027489_+|ATPase-AAA	unknown	unknown	gnl|CDD|225806
NZ_CP009449.1|WP_003414279.1|3032955_3033972_-|CRISPR-associated-endonuclease-Cas1	cas1	COG1518_cas1_CAS-I:CAS-II:CAS-III	gnl|CDD|272998
NZ_CP009449.1|WP_010950777.1|3023862_3024174_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003414285.1|3035228_3036356_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	COG1332_csm5gr7_CAS-III-A	gnl|CDD|224251
NZ_CP009449.1|WP_003414292.1|3037241_3037952_-|CRISPR-type-III-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl|CDD|187815
NZ_CP009449.1|WP_003900578.1|3020883_3021249_+|hypothetical-protein	unknown	unknown	gnl|CDD|379326
NZ_CP009449.1|WP_003904931.1|3041889_3042435_-|DUF1802-domain-containing-protein	unknown	unknown	gnl|CDD|226743
NZ_CP009449.1|WP_003414184.1|3021722_3021914_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003910937.1|3025966_3026680_+|integrase	unknown	unknown	gnl|CDD|378147
NZ_CP009449.1|WP_003414296.1|3037961_3038336_-|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	cd09647_csm2gr11_CAS-III-A	gnl|CDD|273844
NZ_CP009449.1|WP_003414181.1|3021321_3021726_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_010950780.1|3040767_3041712_-|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl|CDD|227838
NZ_CP009449.1|WP_003414276.1|3032613_3032955_-|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl|CDD|224262
NZ_CP009449.1|WP_010950778.1|3025272_3025953_+|transposase	unknown	unknown	gnl|CDD|379233
NZ_CP009449.1|WP_003900580.1|3038332_3040771_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	COG1353_cas10_CAS-III	gnl|CDD|187811

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP009449.1|WP_003414288.1|3036352_3037261_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	COG1567_csm4gr5_CAS-III-A	1.3e-98	324.8	0.0
NZ_CP009449.1|WP_003900580.1|3038332_3040771_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	COG1353_cas10_CAS-III	1.9e-238	788.5	0.0
NZ_CP009449.1|WP_003414296.1|3037961_3038336_-|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	cd09647_csm2gr11_CAS-III-A	2.1e-23	77.8	0.2
NZ_CP009449.1|WP_003414285.1|3035228_3036356_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	COG1332_csm5gr7_CAS-III-A	3.7e-129	426.3	0.0
NZ_CP009449.1|WP_003414279.1|3032955_3033972_-|CRISPR-associated-endonuclease-Cas1	cas1	COG1518_cas1_CAS-I:CAS-II:CAS-III	1e-108	357.9	0.0
NZ_CP009449.1|WP_003414276.1|3032613_3032955_-|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	5.6e-26	85.5	0.1
NZ_CP009449.1|WP_010950780.1|3040767_3041712_-|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	1.5e-103	340.7	0.1
NZ_CP009449.1|WP_003414292.1|3037241_3037952_-|CRISPR-type-III-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	6.2e-81	265.9	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP009449.1|WP_003414288.1|3036352_3037261_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl|CDD|224483	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.37381e-109
NZ_CP009449.1|WP_003414409.1|3042706_3043591_-|hypothetical-protein	gnl|CDD|225162	COG2253, COG2253, Uncharacterized conserved protein [Function unknown].	3.55008e-105
NZ_CP009449.1|WP_003899488.1|3022112_3023267_+|transposase	gnl|CDD|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.94329e-16
NZ_CP009449.1|WP_003414201.1|3026676_3027489_+|ATPase-AAA	gnl|CDD|225806	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion].	2.9818e-110
NZ_CP009449.1|WP_003414279.1|3032955_3033972_-|CRISPR-associated-endonuclease-Cas1	gnl|CDD|272998	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1. This model identifies CRISPR-associated protein Cas1, the most universal CRISPR system protein. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Cas1 is a metal-dependent DNA-specific endonuclease.	2.72742e-113
NZ_CP009449.1|WP_003414285.1|3035228_3036356_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl|CDD|224251	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.40728e-139
NZ_CP009449.1|WP_003414292.1|3037241_3037952_-|CRISPR-type-III-associated-RAMP-protein-Csm3	gnl|CDD|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	4.36536e-99
NZ_CP009449.1|WP_003904931.1|3041889_3042435_-|DUF1802-domain-containing-protein	gnl|CDD|226743	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown].	9.382e-85
NZ_CP009449.1|WP_003900580.1|3038332_3040771_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl|CDD|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	0
NZ_CP009449.1|WP_003900578.1|3020883_3021249_+|hypothetical-protein	gnl|CDD|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	0.00179041
NZ_CP009449.1|WP_003414296.1|3037961_3038336_-|type-III-A-CRISPR-associated-protein-Csm2	gnl|CDD|273844	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2. These proteins are found adjacent to a characteristic short, palidromic repeat cluster termed CRISPR, a probable mobile DNA element. This model represents the C-terminal domain of a minor family of CRISPR-associated protein from the Mtube subtype of CRISPR/Cas locus. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2.	4.56134e-21
NZ_CP009449.1|WP_003910937.1|3025966_3026680_+|integrase	gnl|CDD|378147	pfam09299, Mu-transpos_C, Mu transposase, C-terminal. Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology.	5.84025e-10
NZ_CP009449.1|WP_010950780.1|3040767_3041712_-|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	7.43814e-78
NZ_CP009449.1|WP_003414276.1|3032613_3032955_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|224262	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms].	3.66595e-25
NZ_CP009449.1|WP_010950778.1|3025272_3025953_+|transposase	gnl|CDD|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	5.94158e-07

Protein sequences

>NZ_CP009449.1|WP_003414201.1|3026676_3027489_+|ATPase-AAA
MMHKLISYYGFSRMPFGRDLAPGMLHRHSAHNEAVARIGWCIADRRIGVITGEVGAGKTVAVRAALASLDRSRHTVIYLPDPTVGVQGIHHRIVASLGGQPLTHHATLAPQAADALAAEQAERGRTPVVVVEEAHLLGYDQLEALRLLTNHDLDSSSPFACLLIGQPTLRRRMKLGVLAALDQRIGLRYAMPPMTDTNTGSYLRHHLKLAGRDDALFSDDAIGLIHQTSRGYPRAVNNLALQALVAAFAADKAIVDESTTRTAIAEVTAD
>NZ_CP009449.1|WP_003910937.1|3025966_3026680_+|integrase
MDAWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMGRAIPYHIGRHSHPKAKPETPTAPPKPSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK
>NZ_CP009449.1|WP_010950778.1|3025272_3025953_+|transposase
MAVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAFLDDHSRLVPGYRGPCRGHGAAGRRTAPGAGLPRRAQRGVCR
>NZ_CP009449.1|WP_003414195.1|3024593_3025202_+|hypothetical-protein
MVTVEADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQLRGPAGPVELCPRRSRCTGCGVTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERVEAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAVSGGRLLAPGWPGEWVQHESTLP
>NZ_CP009449.1|WP_010950777.1|3023862_3024174_+|hypothetical-protein
MTYAARDDTTLPKLLAQMRWVVLVDKRQLAVLLLENEGPVASATDPLDTRGDSDYENQPVDAVERLCRRLADQAVRQWGFMQGLKQKLGPGVDVRMKLVEWNR
>NZ_CP009449.1|WP_003899489.1|3023500_3023758_+|hypothetical-protein
MSNVLDAISTEHRPVIEQELENRNPALFDELRRTEKPTNEQSDAVIDVLSDALMKTFGPDWVPNDYGLKIERAIDAYLETWPIYR
>NZ_CP009449.1|WP_003899488.1|3022112_3023267_+|transposase
MVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKYLVVMLELWLPLVAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTEALATARHIDLQSLQPSINRLAKAK
>NZ_CP009449.1|WP_003414184.1|3021722_3021914_+|hypothetical-protein
MKTNPRYGPAFYSVMTVLFLALFVLNVCTHGSTLGLISTGGLAVLMGYIGYRGWSGKRHINRQ
>NZ_CP009449.1|WP_003414181.1|3021321_3021726_+|hypothetical-protein
MGRDNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWALMGMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANRMPHWAAGTLPDGFPARAVRTRT
>NZ_CP009449.1|WP_003900578.1|3020883_3021249_+|hypothetical-protein
MGALSRPAGSWVLRARHGEHRADPGAIAAGPGPTRPDPIPVLVLARLALDRQEQGTGLGGDLLLDALIRSVAGARHYGARALVVDAIDDRAAEFYGHHGFLPLEGRRLYRRISDIARALGV
>NZ_CP009449.1|WP_003414276.1|3032613_3032955_-|CRISPR-associated-endonuclease-Cas2
MPTRSREEYFNLPLKVDESSGTIGKMFVLVIYDISDNRRRASLAKILAGFGYRVQESAFEAMLTKGQLAKLVARIDRFAIDCDNIRIYKIRGVAAVTFYGRGRLVSAEEFVFF
>NZ_CP009449.1|WP_003414279.1|3032955_3033972_-|CRISPR-associated-endonuclease-Cas1
MVQLYVSDSVSRISFADGRVIVWSEELGESQYPIETLDGITLFGRPTMTTPFIVEMLKRERDIQLFTTDGHYQGRISTPDVSYAPRLRQQVHRTDDPAFCLSLSKRIVSRKILNQQALIRAHTSGQDVAESIRTMKHSLAWVDRSGSLAELNGFEGNAAKAYFTALGHLVPQEFAFQGRSTRPPLDAFNSMVSLGYSLLYKNIIGAIERHSLNAYIGFLHQDSRGHATLASDLMEVWRAPIIDDTVLRLIADGVVDTRAFSKNSDTGAVFATREATRSIARAFGNRIARTATYIKGDPHRYTFQYALDLQLQSLVRVIEAGHPSRLVDIDITSEPSGA
>NZ_CP009449.1|WP_003414285.1|3035228_3036356_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKRKSFEAFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGKPDGLPLFRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPGVNAIVGPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDNICYEMGQCELSIRRAE
>NZ_CP009449.1|WP_003414288.1|3036352_3037261_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MNSRLFRFDFDRTHFGDHGLESSTISCPADTLYSALCVEALRMGGQQLLGELVACSTLRLTDLLPYVGPDYLVPKPLHSVRSDGSSMQKKLAKKIGFLPAAQLGSFLDGTADLKELAARQTKIGVHAVSAKAAIHNGKKDADPYRVGYFRFELDAGLWLLATGSESELGLLTRLLKGISALGGERTSGFGAFNLTESEAPAALTPTVDAASLMTLTTSLPTDDELEAALAGATYRLVKRSGFVASSTYADMPLRKRDIYKFAAGSVFSRPFQGGILDVSLGGNHPVYSYARPLFLALPESAA
>NZ_CP009449.1|WP_003414292.1|3037241_3037952_-|CRISPR-type-III-associated-RAMP-protein-Csm3
MTTSYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSRQYGADTETFYRKPNEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAKTLTEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDFNAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEKLNHELAAV
>NZ_CP009449.1|WP_003414296.1|3037961_3038336_-|type-III-A-CRISPR-associated-protein-Csm2
MSVIQDDYVKQAEVIRGLPKKKNGFELTTTQLRVLLSLTAQLFDEAQQSANPTLPRQLKEKVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKYLDPKDK
>NZ_CP009449.1|WP_003900580.1|3038332_3040771_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MNPQLIEAIIGCLLHDIGKPVQRAALGYPGRHSAIGRAFMKKVWLRDSRNPSQFTDEVDEADIGVSDRRILDAISYHHSSALRTAAENGRLAADAPAYIAYIADNIAAGTDRRKADSDDGHGASTWDPDTPLYSMFNRFGSGTANLAFAPEMLDDRKPINIPSPRRIEFDKDRYAAIVNKLKAILVDLERSDTYLASLLNVLEATLSFVPSSTDASEVVDVSLFDHLKLTGALGACIWHYLQATGQSDFKSALFDKQDTFYNEKAFLLTTFDVSGIQDFIYTIHSSGAAKMLRARSFYLEMLTEHLIDELLARVGLSRANLNYSGGGHAYLLLPNTESARKSVEQFEREANDWLLENFATRLFIATGSVPLAANDLMRRPNESASQASNRALRYSGLYRELSEQLSAKKLARYSADQLRELNSRDHDGQKGDRECSVCHTVNRTVSADDEPKCSLCQALTAASSQIQSESRRFLLISDGATKGLPLPFGATLTFCSRADADKALQQPQTRRRYAKNKFFAGECLGTGLWVGDYVAQMEFGDYVKRASGIARLGVLRLDVDNLGQAFTHGFMEQGNGKFNTISRTAAFSRMLSLFFRQHINYVLARPKLRPITGDDPARPREATIIYSGGDDVFVVGAWDDVIEFGIELRERFHEFTQGKLTVSAGIGMFPDKYPISVMAREVGDLEDAAKSLPGKNGVALFDREFTFGWDELLSKVIEEKYRHIADYFSGNEERGMAFIYKLLELLAERDDRITKARWVYFLTRMRNPTGDTAPFQQFANRLHQWFQDPTDAKQLKTALHLYIYRTRKEESE
>NZ_CP009449.1|WP_010950780.1|3040767_3041712_-|CRISPR-associated-endoribonuclease-Cas6
MAARRGGIRRTDLLRRSGQPRGRHRASAAESGLTWISPTLILVGFSHRGDRRMTEPLSRLTLTLEVDAPLERARVATLGPHLHGVLMESIPADYVQTLHTVPVNPYSQYALARSTTSLEWKISTLTNEARQQIVGPINDAAFAGFRLRASGIATQVTSRSLEQNPLSQFARIFYARPETRKFRVEFLTPTAFKQSGEYVFWPDPRLVFQSLAQKYGAIVDGEEPDPGLIAEFGQSVRLSAFRVASAPFAVGAARVPGFTGSATFTVRGVDTFASYIAALLWFGEFSGCGIKASMGMGAIRVQPLAPREKCVPKP
>NZ_CP009449.1|WP_003904931.1|3041889_3042435_-|DUF1802-domain-containing-protein
MTPALKEWSAAVHALLDGRQTVLLRKGGIGEKRFEVAAHEFLLFPTVAHSHAERVRPEHRDLLGPAAADSTDECVLLRAAAKVVAALPVNRPEGLDAIEDLHIWTAESVRADRLDFRPKHKLAVLVVCAIPLAEPVRLARRPEYGGCTSWVQLPLTPQLAEPVHDEAALAEVAARVREAVG
>NZ_CP009449.1|WP_003414409.1|3042706_3043591_-|hypothetical-protein
MAGLTRALVARHALGRAEAYDAALLDVAQDHLLYLLSQTVQFGDNRLVFKGGTSLRKCRLGNVGRFSTDLDFSAPDDEVVLEVCELIDGARVGGFEFGVQSTRGDGRHWQLRVRHTELGEPRIVASVEFARRPLALPSELLAFIQLPIHKAYGFGLPTLPVVAEAEACAEKLARYRRVALARDLYDLNHFASRTIDEPLVRRLWVLKVWGDVVDDRRGTRPLRVEDVLAARSEHDFQPDSIGVLTRPVAMAAWEARVRKRFAFLTDLDADEQRWAACDERHRREVENALAVLRS

Crispr_ID: NZ_CP009449_8

• CRISPR_ID: NZ_CP009449_8
• CRISPR_location: 3031427-3032565
• CRISPR_type: TypeIII
• Repeat_type: II-B,III-A
• Spacer_info: 15 spacers
• Cas_protein_info: cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6

Consensus repeat of NZ_CP009449_8

Consensus_repeat	Method
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CRISPRCasFinder
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CRT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	PILER-CR

spacers of NZ_CP009449_8

>8.1|3031463|37|NZ_CP009449|CRISPRCasFinder,CRT
CTAGGCCGCCCCAGCAACACCGAGAGCGGTTGCGCGC
>8.2|3031536|37|NZ_CP009449|CRISPRCasFinder,CRT
ACGGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA
>8.3|3031609|39|NZ_CP009449|CRISPRCasFinder,CRT
TCAAAAACGGGGACGGCATGCTGCATGCCCTAACGTCGT
>8.4|3031684|38|NZ_CP009449|CRISPRCasFinder,CRT,PILER-CR
CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG
>8.5|3031758|38|NZ_CP009449|CRISPRCasFinder,CRT,PILER-CR
CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG
>8.6|3031832|35|NZ_CP009449|CRISPRCasFinder,CRT,PILER-CR
CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA
>8.7|3031903|39|NZ_CP009449|CRISPRCasFinder,CRT,PILER-CR
CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT
>8.8|3031978|38|NZ_CP009449|CRISPRCasFinder,CRT,PILER-CR
ACCCCTGAGCCACGGCATGTGCACGGCTCCGTGTTCAA
>8.9|3032052|39|NZ_CP009449|CRISPRCasFinder,CRT,PILER-CR
TCGATGAATGATGCGCGCCAGCGGTAACGCGTGGGATGT
>8.10|3032127|36|NZ_CP009449|CRISPRCasFinder,CRT,PILER-CR
TCTGAAAATTCGTGGTCAACGAATTGTCGTCGAAAT
>8.11|3032199|35|NZ_CP009449|CRISPRCasFinder,CRT,PILER-CR
ACGGGCCGTGGGGCACTTACGGCGACGGCGCACAT
>8.12|3032270|37|NZ_CP009449|CRISPRCasFinder,CRT,PILER-CR
CCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCGA
>8.13|3032343|36|NZ_CP009449|CRISPRCasFinder,CRT,PILER-CR
TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA
>8.14|3032415|41|NZ_CP009449|CRISPRCasFinder,CRT,PILER-CR
ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG
>8.15|3032492|38|NZ_CP009449|CRISPRCasFinder,CRT,PILER-CR
GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA

CRISPR arrays and Neighbor proteins around NZ_CP009449_8

CRISPR arrays

The CRISPR arrays of NZ_CP009449_8

>merge|NZ_CP009449|8|3031427-3032565|CRISPRCasFinder,CRT,PILER-CR
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCTAGGCCGCCCCAGCAACACCGAGAGCGGTTGCGCGCGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACACGGTGGGGAGAGGGAATGGCAATGATGGTCGACGAAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTCAAAAACGGGGACGGCATGCTGCATGCCCTAACGTCGTGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTTGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACACCCCTGAGCCACGGCATGTGCACGGCTCCGTGTTCAAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTCGATGAATGATGCGCGCCAGCGGTAACGCGTGGGATGTGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTCTGAAAATTCGTGGTCAACGAATTGTCGTCGAAATGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACACGGGCCGTGGGGCACTTACGGCGACGGCGCACATGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCGAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACGTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC

>NZ_CP009449|8|6|3031427-3032565|CRISPRCasFinder
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CTAGGCCGCCCCAGCAACACCGAGAGCGGTTGCGCGC
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ACGGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TCAAAAACGGGGACGGCATGCTGCATGCCCTAACGTCGT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ACCCCTGAGCCACGGCATGTGCACGGCTCCGTGTTCAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TCGATGAATGATGCGCGCCAGCGGTAACGCGTGGGATGT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TCTGAAAATTCGTGGTCAACGAATTGTCGTCGAAAT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ACGGGCCGTGGGGCACTTACGGCGACGGCGCACAT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCGA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC

>NZ_CP009449|8|3|3031427-3032565|CRT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CTAGGCCGCCCCAGCAACACCGAGAGCGGTTGCGCGC
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ACGGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TCAAAAACGGGGACGGCATGCTGCATGCCCTAACGTCGT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ACCCCTGAGCCACGGCATGTGCACGGCTCCGTGTTCAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TCGATGAATGATGCGCGCCAGCGGTAACGCGTGGGATGT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TCTGAAAATTCGTGGTCAACGAATTGTCGTCGAAAT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ACGGGCCGTGGGGCACTTACGGCGACGGCGCACAT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCGA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC

>NZ_CP009449|8|6|3031648-3032565|PILER-CR
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ACCCCTGAGCCACGGCATGTGCACGGCTCCGTGTTCAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TCGATGAATGATGCGCGCCAGCGGTAACGCGTGGGATGT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TCTGAAAATTCGTGGTCAACGAATTGTCGTCGAAAT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ACGGGCCGTGGGGCACTTACGGCGACGGCGCACAT
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	CCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCGA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA
GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009449.1|WP_003414195.1|3024593_3025202_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003414288.1|3036352_3037261_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	COG1567_csm4gr5_CAS-III-A	gnl|CDD|224483
NZ_CP009449.1|WP_003414409.1|3042706_3043591_-|hypothetical-protein	unknown	unknown	gnl|CDD|225162
NZ_CP009449.1|WP_003899489.1|3023500_3023758_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003899488.1|3022112_3023267_+|transposase	unknown	unknown	gnl|CDD|366234
NZ_CP009449.1|WP_003414201.1|3026676_3027489_+|ATPase-AAA	unknown	unknown	gnl|CDD|225806
NZ_CP009449.1|WP_003414279.1|3032955_3033972_-|CRISPR-associated-endonuclease-Cas1	cas1	COG1518_cas1_CAS-I:CAS-II:CAS-III	gnl|CDD|272998
NZ_CP009449.1|WP_010950777.1|3023862_3024174_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003414285.1|3035228_3036356_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	COG1332_csm5gr7_CAS-III-A	gnl|CDD|224251
NZ_CP009449.1|WP_003414292.1|3037241_3037952_-|CRISPR-type-III-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl|CDD|187815
NZ_CP009449.1|WP_003900578.1|3020883_3021249_+|hypothetical-protein	unknown	unknown	gnl|CDD|379326
NZ_CP009449.1|WP_003904931.1|3041889_3042435_-|DUF1802-domain-containing-protein	unknown	unknown	gnl|CDD|226743
NZ_CP009449.1|WP_003414184.1|3021722_3021914_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003910937.1|3025966_3026680_+|integrase	unknown	unknown	gnl|CDD|378147
NZ_CP009449.1|WP_003414296.1|3037961_3038336_-|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	cd09647_csm2gr11_CAS-III-A	gnl|CDD|273844
NZ_CP009449.1|WP_003414181.1|3021321_3021726_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_010950780.1|3040767_3041712_-|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl|CDD|227838
NZ_CP009449.1|WP_003414276.1|3032613_3032955_-|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl|CDD|224262
NZ_CP009449.1|WP_010950778.1|3025272_3025953_+|transposase	unknown	unknown	gnl|CDD|379233
NZ_CP009449.1|WP_003900580.1|3038332_3040771_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	COG1353_cas10_CAS-III	gnl|CDD|187811

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP009449.1|WP_003414288.1|3036352_3037261_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	COG1567_csm4gr5_CAS-III-A	1.3e-98	324.8	0.0
NZ_CP009449.1|WP_003900580.1|3038332_3040771_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	COG1353_cas10_CAS-III	1.9e-238	788.5	0.0
NZ_CP009449.1|WP_003414296.1|3037961_3038336_-|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	cd09647_csm2gr11_CAS-III-A	2.1e-23	77.8	0.2
NZ_CP009449.1|WP_003414285.1|3035228_3036356_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	COG1332_csm5gr7_CAS-III-A	3.7e-129	426.3	0.0
NZ_CP009449.1|WP_003414279.1|3032955_3033972_-|CRISPR-associated-endonuclease-Cas1	cas1	COG1518_cas1_CAS-I:CAS-II:CAS-III	1e-108	357.9	0.0
NZ_CP009449.1|WP_003414276.1|3032613_3032955_-|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	5.6e-26	85.5	0.1
NZ_CP009449.1|WP_010950780.1|3040767_3041712_-|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	1.5e-103	340.7	0.1
NZ_CP009449.1|WP_003414292.1|3037241_3037952_-|CRISPR-type-III-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	6.2e-81	265.9	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP009449.1|WP_003414288.1|3036352_3037261_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl|CDD|224483	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.37381e-109
NZ_CP009449.1|WP_003414409.1|3042706_3043591_-|hypothetical-protein	gnl|CDD|225162	COG2253, COG2253, Uncharacterized conserved protein [Function unknown].	3.55008e-105
NZ_CP009449.1|WP_003899488.1|3022112_3023267_+|transposase	gnl|CDD|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.94329e-16
NZ_CP009449.1|WP_003414201.1|3026676_3027489_+|ATPase-AAA	gnl|CDD|225806	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion].	2.9818e-110
NZ_CP009449.1|WP_003414279.1|3032955_3033972_-|CRISPR-associated-endonuclease-Cas1	gnl|CDD|272998	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1. This model identifies CRISPR-associated protein Cas1, the most universal CRISPR system protein. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Cas1 is a metal-dependent DNA-specific endonuclease.	2.72742e-113
NZ_CP009449.1|WP_003414285.1|3035228_3036356_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl|CDD|224251	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.40728e-139
NZ_CP009449.1|WP_003414292.1|3037241_3037952_-|CRISPR-type-III-associated-RAMP-protein-Csm3	gnl|CDD|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	4.36536e-99
NZ_CP009449.1|WP_003904931.1|3041889_3042435_-|DUF1802-domain-containing-protein	gnl|CDD|226743	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown].	9.382e-85
NZ_CP009449.1|WP_003900580.1|3038332_3040771_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl|CDD|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	0
NZ_CP009449.1|WP_003900578.1|3020883_3021249_+|hypothetical-protein	gnl|CDD|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	0.00179041
NZ_CP009449.1|WP_003414296.1|3037961_3038336_-|type-III-A-CRISPR-associated-protein-Csm2	gnl|CDD|273844	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2. These proteins are found adjacent to a characteristic short, palidromic repeat cluster termed CRISPR, a probable mobile DNA element. This model represents the C-terminal domain of a minor family of CRISPR-associated protein from the Mtube subtype of CRISPR/Cas locus. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2.	4.56134e-21
NZ_CP009449.1|WP_003910937.1|3025966_3026680_+|integrase	gnl|CDD|378147	pfam09299, Mu-transpos_C, Mu transposase, C-terminal. Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology.	5.84025e-10
NZ_CP009449.1|WP_010950780.1|3040767_3041712_-|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	7.43814e-78
NZ_CP009449.1|WP_003414276.1|3032613_3032955_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|224262	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms].	3.66595e-25
NZ_CP009449.1|WP_010950778.1|3025272_3025953_+|transposase	gnl|CDD|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	5.94158e-07

Protein sequences

>NZ_CP009449.1|WP_003414201.1|3026676_3027489_+|ATPase-AAA
MMHKLISYYGFSRMPFGRDLAPGMLHRHSAHNEAVARIGWCIADRRIGVITGEVGAGKTVAVRAALASLDRSRHTVIYLPDPTVGVQGIHHRIVASLGGQPLTHHATLAPQAADALAAEQAERGRTPVVVVEEAHLLGYDQLEALRLLTNHDLDSSSPFACLLIGQPTLRRRMKLGVLAALDQRIGLRYAMPPMTDTNTGSYLRHHLKLAGRDDALFSDDAIGLIHQTSRGYPRAVNNLALQALVAAFAADKAIVDESTTRTAIAEVTAD
>NZ_CP009449.1|WP_003910937.1|3025966_3026680_+|integrase
MDAWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMGRAIPYHIGRHSHPKAKPETPTAPPKPSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK
>NZ_CP009449.1|WP_010950778.1|3025272_3025953_+|transposase
MAVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAFLDDHSRLVPGYRGPCRGHGAAGRRTAPGAGLPRRAQRGVCR
>NZ_CP009449.1|WP_003414195.1|3024593_3025202_+|hypothetical-protein
MVTVEADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQLRGPAGPVELCPRRSRCTGCGVTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERVEAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAVSGGRLLAPGWPGEWVQHESTLP
>NZ_CP009449.1|WP_010950777.1|3023862_3024174_+|hypothetical-protein
MTYAARDDTTLPKLLAQMRWVVLVDKRQLAVLLLENEGPVASATDPLDTRGDSDYENQPVDAVERLCRRLADQAVRQWGFMQGLKQKLGPGVDVRMKLVEWNR
>NZ_CP009449.1|WP_003899489.1|3023500_3023758_+|hypothetical-protein
MSNVLDAISTEHRPVIEQELENRNPALFDELRRTEKPTNEQSDAVIDVLSDALMKTFGPDWVPNDYGLKIERAIDAYLETWPIYR
>NZ_CP009449.1|WP_003899488.1|3022112_3023267_+|transposase
MVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKYLVVMLELWLPLVAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTEALATARHIDLQSLQPSINRLAKAK
>NZ_CP009449.1|WP_003414184.1|3021722_3021914_+|hypothetical-protein
MKTNPRYGPAFYSVMTVLFLALFVLNVCTHGSTLGLISTGGLAVLMGYIGYRGWSGKRHINRQ
>NZ_CP009449.1|WP_003414181.1|3021321_3021726_+|hypothetical-protein
MGRDNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWALMGMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANRMPHWAAGTLPDGFPARAVRTRT
>NZ_CP009449.1|WP_003900578.1|3020883_3021249_+|hypothetical-protein
MGALSRPAGSWVLRARHGEHRADPGAIAAGPGPTRPDPIPVLVLARLALDRQEQGTGLGGDLLLDALIRSVAGARHYGARALVVDAIDDRAAEFYGHHGFLPLEGRRLYRRISDIARALGV
>NZ_CP009449.1|WP_003414276.1|3032613_3032955_-|CRISPR-associated-endonuclease-Cas2
MPTRSREEYFNLPLKVDESSGTIGKMFVLVIYDISDNRRRASLAKILAGFGYRVQESAFEAMLTKGQLAKLVARIDRFAIDCDNIRIYKIRGVAAVTFYGRGRLVSAEEFVFF
>NZ_CP009449.1|WP_003414279.1|3032955_3033972_-|CRISPR-associated-endonuclease-Cas1
MVQLYVSDSVSRISFADGRVIVWSEELGESQYPIETLDGITLFGRPTMTTPFIVEMLKRERDIQLFTTDGHYQGRISTPDVSYAPRLRQQVHRTDDPAFCLSLSKRIVSRKILNQQALIRAHTSGQDVAESIRTMKHSLAWVDRSGSLAELNGFEGNAAKAYFTALGHLVPQEFAFQGRSTRPPLDAFNSMVSLGYSLLYKNIIGAIERHSLNAYIGFLHQDSRGHATLASDLMEVWRAPIIDDTVLRLIADGVVDTRAFSKNSDTGAVFATREATRSIARAFGNRIARTATYIKGDPHRYTFQYALDLQLQSLVRVIEAGHPSRLVDIDITSEPSGA
>NZ_CP009449.1|WP_003414285.1|3035228_3036356_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKRKSFEAFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGKPDGLPLFRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPGVNAIVGPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDNICYEMGQCELSIRRAE
>NZ_CP009449.1|WP_003414288.1|3036352_3037261_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MNSRLFRFDFDRTHFGDHGLESSTISCPADTLYSALCVEALRMGGQQLLGELVACSTLRLTDLLPYVGPDYLVPKPLHSVRSDGSSMQKKLAKKIGFLPAAQLGSFLDGTADLKELAARQTKIGVHAVSAKAAIHNGKKDADPYRVGYFRFELDAGLWLLATGSESELGLLTRLLKGISALGGERTSGFGAFNLTESEAPAALTPTVDAASLMTLTTSLPTDDELEAALAGATYRLVKRSGFVASSTYADMPLRKRDIYKFAAGSVFSRPFQGGILDVSLGGNHPVYSYARPLFLALPESAA
>NZ_CP009449.1|WP_003414292.1|3037241_3037952_-|CRISPR-type-III-associated-RAMP-protein-Csm3
MTTSYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSRQYGADTETFYRKPNEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAKTLTEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDFNAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEKLNHELAAV
>NZ_CP009449.1|WP_003414296.1|3037961_3038336_-|type-III-A-CRISPR-associated-protein-Csm2
MSVIQDDYVKQAEVIRGLPKKKNGFELTTTQLRVLLSLTAQLFDEAQQSANPTLPRQLKEKVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKYLDPKDK
>NZ_CP009449.1|WP_003900580.1|3038332_3040771_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MNPQLIEAIIGCLLHDIGKPVQRAALGYPGRHSAIGRAFMKKVWLRDSRNPSQFTDEVDEADIGVSDRRILDAISYHHSSALRTAAENGRLAADAPAYIAYIADNIAAGTDRRKADSDDGHGASTWDPDTPLYSMFNRFGSGTANLAFAPEMLDDRKPINIPSPRRIEFDKDRYAAIVNKLKAILVDLERSDTYLASLLNVLEATLSFVPSSTDASEVVDVSLFDHLKLTGALGACIWHYLQATGQSDFKSALFDKQDTFYNEKAFLLTTFDVSGIQDFIYTIHSSGAAKMLRARSFYLEMLTEHLIDELLARVGLSRANLNYSGGGHAYLLLPNTESARKSVEQFEREANDWLLENFATRLFIATGSVPLAANDLMRRPNESASQASNRALRYSGLYRELSEQLSAKKLARYSADQLRELNSRDHDGQKGDRECSVCHTVNRTVSADDEPKCSLCQALTAASSQIQSESRRFLLISDGATKGLPLPFGATLTFCSRADADKALQQPQTRRRYAKNKFFAGECLGTGLWVGDYVAQMEFGDYVKRASGIARLGVLRLDVDNLGQAFTHGFMEQGNGKFNTISRTAAFSRMLSLFFRQHINYVLARPKLRPITGDDPARPREATIIYSGGDDVFVVGAWDDVIEFGIELRERFHEFTQGKLTVSAGIGMFPDKYPISVMAREVGDLEDAAKSLPGKNGVALFDREFTFGWDELLSKVIEEKYRHIADYFSGNEERGMAFIYKLLELLAERDDRITKARWVYFLTRMRNPTGDTAPFQQFANRLHQWFQDPTDAKQLKTALHLYIYRTRKEESE
>NZ_CP009449.1|WP_010950780.1|3040767_3041712_-|CRISPR-associated-endoribonuclease-Cas6
MAARRGGIRRTDLLRRSGQPRGRHRASAAESGLTWISPTLILVGFSHRGDRRMTEPLSRLTLTLEVDAPLERARVATLGPHLHGVLMESIPADYVQTLHTVPVNPYSQYALARSTTSLEWKISTLTNEARQQIVGPINDAAFAGFRLRASGIATQVTSRSLEQNPLSQFARIFYARPETRKFRVEFLTPTAFKQSGEYVFWPDPRLVFQSLAQKYGAIVDGEEPDPGLIAEFGQSVRLSAFRVASAPFAVGAARVPGFTGSATFTVRGVDTFASYIAALLWFGEFSGCGIKASMGMGAIRVQPLAPREKCVPKP
>NZ_CP009449.1|WP_003904931.1|3041889_3042435_-|DUF1802-domain-containing-protein
MTPALKEWSAAVHALLDGRQTVLLRKGGIGEKRFEVAAHEFLLFPTVAHSHAERVRPEHRDLLGPAAADSTDECVLLRAAAKVVAALPVNRPEGLDAIEDLHIWTAESVRADRLDFRPKHKLAVLVVCAIPLAEPVRLARRPEYGGCTSWVQLPLTPQLAEPVHDEAALAEVAARVREAVG
>NZ_CP009449.1|WP_003414409.1|3042706_3043591_-|hypothetical-protein
MAGLTRALVARHALGRAEAYDAALLDVAQDHLLYLLSQTVQFGDNRLVFKGGTSLRKCRLGNVGRFSTDLDFSAPDDEVVLEVCELIDGARVGGFEFGVQSTRGDGRHWQLRVRHTELGEPRIVASVEFARRPLALPSELLAFIQLPIHKAYGFGLPTLPVVAEAEACAEKLARYRRVALARDLYDLNHFASRTIDEPLVRRLWVLKVWGDVVDDRRGTRPLRVEDVLAARSEHDFQPDSIGVLTRPVAMAAWEARVRKRFAFLTDLDADEQRWAACDERHRREVENALAVLRS

Crispr_ID: NZ_CP009449_9

• CRISPR_ID: NZ_CP009449_9
• CRISPR_location: 3332277-3332374
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP009449_9

Consensus_repeat	Method
CTGTATTGGCTGAGTCAAGGGCGCGAGCT	CRISPRCasFinder

spacers of NZ_CP009449_9

>9.1|3332306|40|NZ_CP009449|CRISPRCasFinder
TGGCGCAGAATCGCTCCGGATCCGTGATTTTCAAGAGATT

CRISPR arrays and Neighbor proteins around NZ_CP009449_9

CRISPR arrays

The CRISPR arrays of NZ_CP009449_9

>merge|NZ_CP009449|9|3332277-3332374|CRISPRCasFinder
CTGTATTGGCTGAGTCAAGGGCGCGAGCTTGGCGCAGAATCGCTCCGGATCCGTGATTTTCAAGAGATTCTGTATTGGCTGAGTCAAGGGCGCGAGCT

>NZ_CP009449|9|7|3332277-3332374|CRISPRCasFinder
CTGTATTGGCTGAGTCAAGGGCGCGAGCT	TGGCGCAGAATCGCTCCGGATCCGTGATTTTCAAGAGATT
CTGTATTGGCTGAGTCAAGGGCGCGAGCT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009449.1|WP_009938611.1|3332379_3334182_-|acyl-CoA-dehydrogenase	unknown	unknown	gnl|CDD|173841
NZ_CP009449.1|WP_003899898.1|3325753_3326794_+|DNA-polymerase-IV	unknown	unknown	gnl|CDD|179564
NZ_CP009449.1|WP_003415988.1|3328540_3330019_+|cytochrome-P450	unknown	unknown	gnl|CDD|225035
NZ_CP009449.1|WP_003908149.1|3330293_3330479_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003416011.1|3340546_3340957_+|DUF732-domain-containing-protein	unknown	unknown	gnl|CDD|368380
NZ_CP009449.1|WP_003415984.1|3325129_3325744_+|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|366102
NZ_CP009449.1|WP_003904156.1|3323998_3324403_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003415983.1|3324483_3325038_-|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl|CDD|223508
NZ_CP009449.1|WP_003415989.1|3330789_3332262_-|FadR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|225097
NZ_CP009449.1|WP_003416005.1|3339825_3340434_+|DNA-binding-transcriptional-regulator	unknown	unknown	gnl|CDD|225767
NZ_CP009449.1|WP_010950819.1|3334201_3334546_-|acyl-CoA-dehydrogenase	unknown	unknown	gnl|CDD|376923
NZ_CP009449.1|WP_010950820.1|3336361_3338638_+|carbon-starvation-protein-A	unknown	unknown	gnl|CDD|184976
NZ_CP009449.1|WP_003415986.1|3326847_3327711_-|short-chain-dehydrogenase	unknown	unknown	gnl|CDD|181139
NZ_CP009449.1|WP_003415995.1|3339505_3339829_+|multidrug-resistance-protein-Mmr	unknown	unknown	gnl|CDD|224987
NZ_CP009449.1|WP_003415987.1|3327774_3328425_-|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224228
NZ_CP009449.1|WP_003415991.1|3334702_3336226_+|ATP-dependent-DNA-ligase	unknown	unknown	gnl|CDD|235108
NZ_CP009449.1|WP_003416045.1|3342810_3343209_+|camphor-resistance-protein-CrcB	unknown	unknown	gnl|CDD|184572
NZ_CP009449.1|WP_003899902.1|3341097_3342741_-|phosphoglucomutase-(alpha-D-glucose-1,6-bisphosphate-dependent)	unknown	unknown	gnl|CDD|273459
NZ_CP009449.1|WP_003415994.1|3338943_3339369_-|DoxX-family-protein	unknown	unknown	gnl|CDD|225168
NZ_CP009449.1|WP_003415982.1|3323781_3324021_-|NrdH-redoxin	unknown	unknown	gnl|CDD|131249

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP009449.1|WP_009938611.1|3332379_3334182_-|acyl-CoA-dehydrogenase	gnl|CDD|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	8.68269e-99
NZ_CP009449.1|WP_003899898.1|3325753_3326794_+|DNA-polymerase-IV	gnl|CDD|179564	PRK03352, PRK03352, DNA polymerase IV; Validated.	0
NZ_CP009449.1|WP_003415988.1|3328540_3330019_+|cytochrome-P450	gnl|CDD|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	1.69646e-81
NZ_CP009449.1|WP_003415982.1|3323781_3324021_-|NrdH-redoxin	gnl|CDD|131249	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.	4.12342e-38
NZ_CP009449.1|WP_003416011.1|3340546_3340957_+|DUF732-domain-containing-protein	gnl|CDD|368380	pfam05305, DUF732, Protein of unknown function (DUF732). This family consists of several uncharacterized Mycobacterium tuberculosis and leprae proteins of unknown function.	1.75518e-12
NZ_CP009449.1|WP_003415984.1|3325129_3325744_+|TetR/AcrR-family-transcriptional-regulator	gnl|CDD|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.57839e-11
NZ_CP009449.1|WP_010950820.1|3336361_3338638_+|carbon-starvation-protein-A	gnl|CDD|184976	PRK15015, PRK15015, carbon starvation protein CstA.	0
NZ_CP009449.1|WP_003415991.1|3334702_3336226_+|ATP-dependent-DNA-ligase	gnl|CDD|235108	PRK03180, ligB, ATP-dependent DNA ligase; Reviewed.	0
NZ_CP009449.1|WP_003415989.1|3330789_3332262_-|FadR-family-transcriptional-regulator	gnl|CDD|225097	COG2186, FadR, Transcriptional regulators [Transcription].	6.79997e-41
NZ_CP009449.1|WP_003416005.1|3339825_3340434_+|DNA-binding-transcriptional-regulator	gnl|CDD|225767	COG3226, COG3226, Uncharacterized protein conserved in bacteria [Function unknown].	5.87717e-77
NZ_CP009449.1|WP_010950819.1|3334201_3334546_-|acyl-CoA-dehydrogenase	gnl|CDD|376923	pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain.	1.18302e-21
NZ_CP009449.1|WP_003415986.1|3326847_3327711_-|short-chain-dehydrogenase	gnl|CDD|181139	PRK07832, PRK07832, SDR family oxidoreductase.	0
NZ_CP009449.1|WP_003415995.1|3339505_3339829_+|multidrug-resistance-protein-Mmr	gnl|CDD|224987	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism].	3.05568e-26
NZ_CP009449.1|WP_003415987.1|3327774_3328425_-|TetR/AcrR-family-transcriptional-regulator	gnl|CDD|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.2775e-10
NZ_CP009449.1|WP_003415983.1|3324483_3325038_-|NAD(P)H-dependent-oxidoreductase	gnl|CDD|223508	COG0431, COG0431, Predicted flavoprotein [General function prediction only].	1.47908e-43
NZ_CP009449.1|WP_003416045.1|3342810_3343209_+|camphor-resistance-protein-CrcB	gnl|CDD|184572	PRK14216, PRK14216, fluoride efflux transporter CrcB.	4.29628e-77
NZ_CP009449.1|WP_003899902.1|3341097_3342741_-|phosphoglucomutase-(alpha-D-glucose-1,6-bisphosphate-dependent)	gnl|CDD|273459	TIGR01132, pgm, phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P. [Energy metabolism, Sugars].	0
NZ_CP009449.1|WP_003415994.1|3338943_3339369_-|DoxX-family-protein	gnl|CDD|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.08456e-16

Protein sequences

>NZ_CP009449.1|WP_003415989.1|3330789_3332262_-|FadR-family-transcriptional-regulator
MSTEPDAVWTDKRASKIARRIEADIVRRGWPIGASLGSESALQQRFCVSRSVLREAVRLVEHHQVARMRRGPNGGLFICEPNAGPATRAVVIYLEYLGTTIGDLLGARLVLEPLAASLAAEHIDEPGIERLRAVLRAEERWRPGLPPPPEQFYRVLAEQSKNPVLQLFIDILMRLTKRYVQKSGTQSAGEAVEAAGQVHNEHSDIVAAVTAGDSAWAKTLSERHVEAVAGWLQQHQRGNDAAVRNGGRAREPRRAQQLILGAPRGKLAEVLAATIGDDIAASGWQVGSVFGTETALLERYQVSRAVLREAVRLLEYHAIAHMRRGPGGGLVVTTPQPQASIDTIALYLQYRKPSREDLRCVRDAIEIDNVAKVVKRRSEPEVASFLDTLGRPRLDNPTDDVRAAAVEEFRFHVGLARAAGNTMLDLFLLILVELFRRHLSSTEQALPTWSDVVAVGHAHVRILEAIGSGDDSLARCRTRRHLDAAASWWL
>NZ_CP009449.1|WP_003908149.1|3330293_3330479_+|hypothetical-protein
MGVLQRRKAQSMSATKSKGLRAFQTLVAALAAVVAVLAAGCATQRVPTVLPESELIPQSLG
>NZ_CP009449.1|WP_003415988.1|3328540_3330019_+|cytochrome-P450
MATIHPPAYLLDQAKRRFTPSFNNFPGMSLVEHMLLNTKFPEKKLAEPPPGSGLKPVVGDAGLPILGHMIEMLRGGPDYLMFLYKTKGPVVFGDSAVLPGVAALGPDAAQVIYSNRNKDYSQQGWVPVIGPFFHRGLMLLDFEEHMFHRRIMQEAFVRSRLAGYLEQMDRVVSRVVADDWVVNDARFLVYPAMKALTLDIASMVFMGHEPGTDHELVTKVNKAFTITTRAGNAVIRTSVPPFTWWRGLRARELLENYFTARVKERREASGNDLLTVLCQTEDDDGNRFSDADIVNHMIFLMMAAHDTSTSTATTMAYQLAAHPEWQQRCRDESDRHGDGPLDIESLEQLESLDLVMNESIRLVTPVQWAMRQTVRDTELLGYYLPKGTNVIAYPGMNHRLPEIWTDPLTFDPERFTEPRNEHKRHRYAFTPFGGGVHKCIGMVFGQLEIKTILHRLLRRYRLELSRPDYQPRWDYSAMPIPMDGMPIVLRPR
>NZ_CP009449.1|WP_003415987.1|3327774_3328425_-|TetR/AcrR-family-transcriptional-regulator
MTSHAADEKQAAPPMRRRGDRHRQAILRAARELLEETPFAELSVRAISLRAGVARSGFYFYFDSKYSVLAQILAEATEELEEASQHFSARQPGESPEQFVNRMIGSVAAVYANNDPVLRACNAARQSDMEIRDILERQFQVLLRETIGVFEAEVKAGTAHPISEDLPTLVRTLAATTALMLTGDALLVGPDSDAARRVRVLEQMWLNALWGGGKAP
>NZ_CP009449.1|WP_003415986.1|3326847_3327711_-|short-chain-dehydrogenase
MLQRGAGQYFAGKRCFVTGAASGIGRATALRLAAQGAELYLTDRDRDGLAQTVCDARALGAQVPEHRVLDVSDYQDVAAFAADIHARHPSMDVVLNIAGVSAWGTVDQLTHDQWSRMVAINLMGPIHVIETLVPPMVAAGRGGHLVNVSSAAGLVGLPWHAAYSASKYGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDRDDPRVNRWVERFSGHAVTPEKAADKILAGVTRNRYLVYTSADIRALYAFKRYAWWPYTLVMRRVNVFFTRALRPGP
>NZ_CP009449.1|WP_003899898.1|3325753_3326794_+|DNA-polymerase-IV
MPTAAPRWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDDPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLLAKGGGDTEVSAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLELA
>NZ_CP009449.1|WP_003415984.1|3325129_3325744_+|TetR/AcrR-family-transcriptional-regulator
MSGAERLGDLPVFARQEPVPERGDAARNRALLLEAARRLIARSGADAITMDDVAAAAGVGKGTLFRRFGSRAGLMMVLLDEDERASQQAFLFGPPPLGPDAPPLDRLIAFGRERMRFVHAHHQLLSEANRDPQTRHSAALSVLRTHLRVLLASAPTTGDLDAQTDALLALLDVDYVEHQLNAGGHTLQTLGDAWESLARKLCGR
>NZ_CP009449.1|WP_003415983.1|3324483_3325038_-|NAD(P)H-dependent-oxidoreductase
MSDTKSDIKILALVGSLRAASFNRQIAELAAKVAPDGVTVTMFEGLGDLPFYNEDIDTATEVPAPVSALREAASDAHAALVVTPEYNGSIPAVIKNAIDWLSRPFGDGALKDKPLAVIGGSMGRYGGVWAHDETRKSFSIAGTRVVDAIKLSVPFQTLGKSVADDAGLAANVRDAVGNLAAEVG
>NZ_CP009449.1|WP_003904156.1|3323998_3324403_-|hypothetical-protein
MSVAGDISGQTGMAAAEVICDTPPRCSSQAYDQGISKMLFRTSCISSPCHPLGVVFSSTGRSQVHQVSPDPRGAMNFPASASPGRRTWSRYDGNLEPCRAAQHIEDALLESLPDPVRFPISAKERYAHDRDRLH
>NZ_CP009449.1|WP_003415982.1|3323781_3324021_-|NrdH-redoxin
MTVTVYTKPACVQCSATSKALDKQGIAYQKVDISLDSEARDYVMALGYLQAPVVVAGNDHWSGFRPDRIKALAGAALTA
>NZ_CP009449.1|WP_009938611.1|3332379_3334182_-|acyl-CoA-dehydrogenase
MGLDSQVQVTDGVADGEAGIVLGAGLAELLLVAAGDDVLVLERGRKGVSVDVPENFDPTRRSGRVRLDNVRVTTDDILLGAYESALARARTLLAAEAVGGAADCVDSAVAYAKVRQQFGRTIATFQAVKHHCANMLVAAESAIAAVWDAARAAAEDEEQFRLAAAVAAALAFPAYARNAELNIQVHGGIGFTWEHDAHLHLRRALVTVGLFGGDAPVRDVFERTAAGVTRAISLDLPAQAEELRARIRSDAAEIAALEKDAQRDKLIETGYVMPHWPRPWGRAAGAVEQLVIEEEFSAAGIERPDYSITGWVILTLIQHGTPWQIERFVEKALRQQEIWCQLFSEPDAGSDAASVKTRATRVEGGWKINGQKVWTSGAQYCARGLATVRTDPDAPKHAGITTVIIDMLAPGVEVRPLRQITGDSEFNEVFFNDVFVPDEDVVGAPNSGWTVARATLGNERVSIGGSGSYYEAMAAKLVQLVQRRSDAFAGAPIRVGAFLAEDHALRLLNLRRAARSVEGAGPGPEGNITKLKVAEHMIEGAAIAAALWGPEIALLDGPGRVIGRTVMGARGMAIAGGTSEVTRNQIAERILGMPRDPLIS
>NZ_CP009449.1|WP_010950819.1|3334201_3334546_-|acyl-CoA-dehydrogenase
MGIALTDDHRELSGVARAFLTSQKVRWAARASLDAAGDARPPFWQNLAELGWLGLHIDERHGGSGYGLSELVVVIEELGRAVAPGLFVPTVIASAVVAKEGTDDQRARLLPGAD
>NZ_CP009449.1|WP_003415991.1|3334702_3336226_+|ATP-dependent-DNA-ligase
MLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGWAALRSLPPPAPQPALTVTGVDATLSKIGTLSGKGSQAQRAALVAELFSAATEAEQTFLLRLLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLALRFARVVRYRADKDPAEADTIDAVRALY
>NZ_CP009449.1|WP_010950820.1|3336361_3338638_+|carbon-starvation-protein-A
MAAPTPSNRIEERSGHASCVRADADLPPVAILGRSPITLRHKIFFVAVAVIGALAWTVVAFFRNEPVNAVWIVVAAGCTYIIGFRFYARLIEMKVVRPRDDHATPAEILDDGTDYVPTDRRVVFGHHFAAIAGAGPLVGPVLATQMGYLPSSIWIVVGAVLAGCVQDYLVLWISVRRRGRSLGQMVRDELGATAGVAALVGIPVIITIVIAVLALVVVRALAKSPWGVFSIAMTIPIAIFMGCYLRFLRPGRVSEVSLIGIGLLLLAVVSGDWVAHTSWGAAWFSLSPVTLCWLLISYGFAASVLPVWLLLAPRDYLSTFMKVGTIALLAIGVCAAHPIIEAPAVSKFAGSGNGPVFAGSLFPFLFITIACGALSGFHALICSGTTPKMLEKEGQMRVIGYCGMMTESFVAVIALLTAAILDQHLYFTLNAPSLHTHDSAATAAKYVNGLGLTGSPVTPDHISQAAASVGEQTIVSRTGGAPTLAFGMAEMLHRVVGGVGLKAFWYHFAIMFEALFILTTVDAGTRAARFMISDALGNFGGVLRKLQNPSWRPGAWACSLVVVAAWGSILLLGVTDPLGGINTLFPLFGIANQLLAGIAPTVITVVVIKKGRLKWAWIPGIPLLWDLAVTLTASWQKIFSADPSVGYWTQHAHYAAAQHAGETAFGSATNADEINDVVRNTFVQGTLSIVFVVVVVLVVVAGVIVALKTIRGRGIPLAEDDPAPSTLFAPAGLIPTAAERKLQRRLGAPASASVAAPD
>NZ_CP009449.1|WP_003415994.1|3338943_3339369_-|DoxX-family-protein
MVKDLDRRLAGCLPAVLSLFRLVYGLLFAGYGSMILFGWPVTSAQPVEFGSWPGWYAGVIELVAGLLIATGLFTRAVAFVASGEMAVAYFWMHQPYALWPIGGPPDGNGGTPAILFCFGFFLLVFTGGGIYSIDARRTVTA
>NZ_CP009449.1|WP_003415995.1|3339505_3339829_+|multidrug-resistance-protein-Mmr
MIYLYLLCAIFAEVVATSLLKSTEGFTRLWPTVGCLVGYGIAFALLALSISHGMQTDVAYALWSAIGTAAIVLVAVLFLGSPISVMKVVGVGLIVVGVVTLNLAGAH
>NZ_CP009449.1|WP_003416005.1|3339825_3340434_+|DNA-binding-transcriptional-regulator
MTAGSDRRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALAHAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLNELYMAAAHRPELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLVADGPEQREVGQSAHAGRTPD
>NZ_CP009449.1|WP_003416011.1|3340546_3340957_+|DUF732-domain-containing-protein
MLTVGVGIGAAILLGWFTLAHRHPDQPGAAATPPPAGLTTRSAPTAAPPSTLQSPDLDSVFLGNLHDRGISFTNPDAAVYNGKMVCTNLGGGMTVQQVVEALQSSSPALGDRTTAYVAVSIRTYCPKYDAVLPPGS
>NZ_CP009449.1|WP_003899902.1|3341097_3342741_-|phosphoglucomutase-(alpha-D-glucose-1,6-bisphosphate-dependent)
MVANPRAGQPAQPEDLVDLPHLVTAYYSIEPDPDDLAQQVAFGTSGHRGSALTGTFNELHILAITQAIVEYRAAQGTTGPLFIGRDTHGLSEPAWVSALEVLAANQVVAVVDSRDRYTPTPAISHAILTYNRGRTEALADGIVVTPSHNPPSDGGIKYNPPNGGPADTAATTAIAKRANEILLARSMVKRLPLARALRTAQRHDYLGHYVDDLPNVVDIAAIREAGVRIGADPLGGASVDYWGEIAHRHGLDLTVVNPLVDATWRFMTLDTDGKIRMDCSSPDAMAGLIRTMFGNRERYQIATGNDADADRHGIVTPDEGLLNPNHYLAVAIEYLYTHRPSWPAGIAVGKTVVSSSIIDRVVAGIGRQLVEVPVGFKWFVDGLIGATLGFGGEESAGASFLRRDGSVWTTDKDGIIMALLAAEILAVTGATPSQRYHALAGEYGGPCYARIDAPADREQKARLARLSADQVSATELAGEPITAKLTTAPGNGAALGGLKVTTANAWFAARPSGTEDVYKIYAESFRGPQHLVEVQQTAREVVDRVIG
>NZ_CP009449.1|WP_003416045.1|3342810_3343209_+|camphor-resistance-protein-CrcB
MPNHDYRELAAVFAGGALGALARAALSALAIPDPARWPWPTFTVNVVGAFLVGYFTTRLLERLPLSSYRRPLLGTGLCGGLTTFSTMQVETISMIEHGHWGLAAAYSVVSITLGLLAVHLATVLVRRVRIRR

Crispr_ID: NZ_CP009449_10

• CRISPR_ID: NZ_CP009449_10
• CRISPR_location: 3850205-3850299
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP009449_10

Consensus_repeat	Method
GGGGCACTCGGGGGCGGCGCCCCC	CRISPRCasFinder

spacers of NZ_CP009449_10

>10.1|3850229|47|NZ_CP009449|CRISPRCasFinder
GAGCATGCTGCTACCTCGCCTCTCGGCGCCCGCCAAATTAAGTATGC

CRISPR arrays and Neighbor proteins around NZ_CP009449_10

CRISPR arrays

The CRISPR arrays of NZ_CP009449_10

>merge|NZ_CP009449|10|3850205-3850299|CRISPRCasFinder
GGGGCACTCGGGGGCGGCGCCCCCGAGCATGCTGCTACCTCGCCTCTCGGCGCCCGCCAAATTAAGTATGCGGGGCACTCGGGGGCGGCGCCCCC

>NZ_CP009449|10|8|3850205-3850299|CRISPRCasFinder
GGGGCACTCGGGGGCGGCGCCCCC	GAGCATGCTGCTACCTCGCCTCTCGGCGCCCGCCAAATTAAGTATGC
GGGGCACTCGGGGGCGGCGCCCCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009449.1|WP_003418367.1|3851938_3852052_-|50S-ribosomal-protein-L36	unknown	unknown	gnl|CDD|179039
NZ_CP009449.1|WP_003418333.1|3842738_3844151_-|type-VII-secretion-system-ESX-4-subunit-EccB4	unknown	unknown	gnl|CDD|368288
NZ_CP009449.1|WP_003900066.1|3856627_3857722_-|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl|CDD|223528
NZ_CP009449.1|WP_003418336.1|3844271_3845060_+|cutinase	unknown	unknown	gnl|CDD|366455
NZ_CP009449.1|WP_003418351.1|3849117_3850161_-|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl|CDD|235359
NZ_CP009449.1|WP_003418604.1|3852559_3853417_+|TIGR03620-family-F420-dependent-LLM-class-oxidoreductase	unknown	unknown	gnl|CDD|274681
NZ_CP009449.1|WP_003908247.1|3845844_3846084_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003418346.1|3848543_3849086_-|50S-ribosomal-protein-L17	unknown	unknown	gnl|CDD|235522
NZ_CP009449.1|WP_003418331.1|3841406_3842774_+|type-VII-secretion-system-ESX-4-serine-protease-mycosin-MycP4	unknown	unknown	gnl|CDD|274856
NZ_CP009449.1|WP_010950890.1|3840006_3841410_+|type-VII-secretion-system-ESX-4-subunit-EccD4	unknown	unknown	gnl|CDD|274855
NZ_CP009449.1|WP_003418339.1|3845106_3845787_+|cutinase	unknown	unknown	gnl|CDD|366455
NZ_CP009449.1|WP_003418610.1|3854486_3855095_+|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl|CDD|376414
NZ_CP009449.1|WP_003418607.1|3853489_3854485_+|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl|CDD|224013
NZ_CP009449.1|WP_003418354.1|3850311_3850917_-|30S-ribosomal-protein-S4	unknown	unknown	gnl|CDD|235411
NZ_CP009449.1|WP_010950891.1|3846058_3847744_+|allantoin-permease	unknown	unknown	gnl|CDD|224374
NZ_CP009449.1|WP_003418357.1|3850925_3851345_-|30S-ribosomal-protein-S11	unknown	unknown	gnl|CDD|180007
NZ_CP009449.1|WP_003418601.1|3852084_3852306_-|translation-initiation-factor-IF-1	unknown	unknown	gnl|CDD|178954
NZ_CP009449.1|WP_010950893.1|3855616_3856570_+|HNH-endonuclease	unknown	unknown	gnl|CDD|367155
NZ_CP009449.1|WP_003418360.1|3851348_3851723_-|30S-ribosomal-protein-S13	unknown	unknown	gnl|CDD|235358
NZ_CP009449.1|WP_003418344.1|3847705_3848599_-|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl|CDD|223179

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP009449.1|WP_003418367.1|3851938_3852052_-|50S-ribosomal-protein-L36	gnl|CDD|179039	PRK00465, rpmJ, 50S ribosomal protein L36; Reviewed.	3.35756e-14
NZ_CP009449.1|WP_003418333.1|3842738_3844151_-|type-VII-secretion-system-ESX-4-subunit-EccB4	gnl|CDD|368288	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B. EccB is a family of largely Gram-positive bacterial transmembrane componenets of the type VII secretion system characterized in Mycobacterium tuberculosis, systems ESX1-5. Translocation of virulent peptides through the membranes is thought to be mediated via a complex that includes EccB, EccC, EccD, EccE, and MycP. EccB, EccC, EccD, and EccE form a stable complex in the mycobacterial cell envelope.	1.37667e-169
NZ_CP009449.1|WP_003900066.1|3856627_3857722_-|NAD(P)-dependent-oxidoreductase	gnl|CDD|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	4.54725e-42
NZ_CP009449.1|WP_003418336.1|3844271_3845060_+|cutinase	gnl|CDD|366455	pfam01083, Cutinase, Cutinase.	1.07394e-61
NZ_CP009449.1|WP_003418351.1|3849117_3850161_-|DNA-directed-RNA-polymerase-subunit-alpha	gnl|CDD|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	0
NZ_CP009449.1|WP_003418604.1|3852559_3853417_+|TIGR03620-family-F420-dependent-LLM-class-oxidoreductase	gnl|CDD|274681	TIGR03620, F420_MSMEG_4141, probable F420-dependent oxidoreductase, MSMEG_4141 family. Members of this protein family, related to F420-dependent oxidoreductases within the larger family of a bacterial luciferase (an FMN-dependent enzyme), occurs only within the small subset of species that synthesize F420. Most such proteins are from members of the Actinobacteria, but at least one species, Sphingomonas wittichii, belongs to the Alphaproteobacteria. [Unknown function, Enzymes of unknown specificity].	7.43221e-130
NZ_CP009449.1|WP_003418357.1|3850925_3851345_-|30S-ribosomal-protein-S11	gnl|CDD|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	3.24259e-84
NZ_CP009449.1|WP_003418346.1|3848543_3849086_-|50S-ribosomal-protein-L17	gnl|CDD|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	2.27278e-66
NZ_CP009449.1|WP_003418331.1|3841406_3842774_+|type-VII-secretion-system-ESX-4-serine-protease-mycosin-MycP4	gnl|CDD|274856	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin. Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair].	9.50678e-123
NZ_CP009449.1|WP_010950890.1|3840006_3841410_+|type-VII-secretion-system-ESX-4-subunit-EccD4	gnl|CDD|274855	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD. Members of this family are EccD, a component of actinobacterial type VII secretion systems (T7SS) with ten to eleven predicted transmembrane helix regions. [Protein fate, Protein and peptide secretion and trafficking].	3.05277e-79
NZ_CP009449.1|WP_003418339.1|3845106_3845787_+|cutinase	gnl|CDD|366455	pfam01083, Cutinase, Cutinase.	2.19402e-58
NZ_CP009449.1|WP_003418610.1|3854486_3855095_+|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl|CDD|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	1.35655e-85
NZ_CP009449.1|WP_003418607.1|3853489_3854485_+|dTDP-glucose-4,6-dehydratase	gnl|CDD|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_CP009449.1|WP_003418354.1|3850311_3850917_-|30S-ribosomal-protein-S4	gnl|CDD|235411	PRK05327, rpsD, 30S ribosomal protein S4; Validated.	2.79861e-113
NZ_CP009449.1|WP_010950891.1|3846058_3847744_+|allantoin-permease	gnl|CDD|224374	COG1457, CodB, Purine-cytosine permease and related proteins [Nucleotide transport and metabolism].	9.18414e-16
NZ_CP009449.1|WP_003418601.1|3852084_3852306_-|translation-initiation-factor-IF-1	gnl|CDD|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	3.60305e-46
NZ_CP009449.1|WP_010950893.1|3855616_3856570_+|HNH-endonuclease	gnl|CDD|367155	pfam02720, DUF222, Domain of unknown function (DUF222). This family is often found associated to the N-terminus of the HNH endonuclease domain pfam01844. The function of this domain is uncertain. This family has been called the 13E12 repeat family.	4.98562e-62
NZ_CP009449.1|WP_003418360.1|3851348_3851723_-|30S-ribosomal-protein-S13	gnl|CDD|235358	PRK05179, rpsM, 30S ribosomal protein S13; Validated.	1.7827e-75
NZ_CP009449.1|WP_003418344.1|3847705_3848599_-|tRNA-pseudouridine(38-40)-synthase-TruA	gnl|CDD|223179	COG0101, TruA, Pseudouridylate synthase [Translation, ribosomal structure and biogenesis].	2.39395e-108

Protein sequences

>NZ_CP009449.1|WP_003418351.1|3849117_3850161_-|DNA-directed-RNA-polymerase-subunit-alpha
MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHNPGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDATRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAEADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIKLHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL
>NZ_CP009449.1|WP_003418346.1|3848543_3849086_-|50S-ribosomal-protein-L17
MPKPTKGPRLGGSSSHQKAILANLATSLFEHGRITTTEPKARALRPYAEKLITHAKKGALHNRREVLKKLRDKDVVHTLFAEIGPFFADRDGGYTRIIKIEARKGDNAPMAVIELVREKTVTSEANRARRVAAAQAKAKKAAAMPTEESEAKPAEEGDVVGASEPDAKAPEEPPAEAPEN
>NZ_CP009449.1|WP_003418344.1|3847705_3848599_-|tRNA-pseudouridine(38-40)-synthase-TruA
MSLTRRPPKSPPQRPPRISGVVRLRLDIAYDGTDFAGWAAQVGQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDDQLASRNLVTRDVRSG
>NZ_CP009449.1|WP_010950891.1|3846058_3847744_+|allantoin-permease
MPGVITNSESPTAADHDRITATRETLEDYTLRLAPRSYRRWPPAVVGISALGGIAYLADFAIGANVGITWGTANALCGIAIFALVVFVTGLPLAYYAARYNIDLDLITRGSGFGYYGSVVTNVIFATFTFIFFALEGSIMAQGLKLGLHIPLWAGYACSTLIIFPLVVYGMKVLSQLQLWTTPLWLILMAAPFGYLVVSHPDSIGQFFSYAGKDGHGGLSFGSVLLAAGVCLSLIAQIAEQIDYLRFMPPRTPENANRWWTWTLLAGPGWVAFGATKQIIGLFLAVYLMANIPGSSTIANQPVHQFMQIYRTFVPGWLALTLAVILVILSQIKINVTNAYSGSLAWTNSFTRLTKHYPGRVVFLGVNLAIALILMEANMFDFLNTILGCYANCGMAWVVAVASDIGFNKYLLGLSPKTPEFRRGMLYAINPVGFGSLLLAAGLSIVTFFGGLGAALQPYSPLVAIVTALVMPPILAAATKGKYYLRRTHDGIDLPMYDEHGNPSAAVLTCHVCHQDFERPDMLACQTHGAHVCSLCLSTDKQAEHVLPGLARAHIPGDQVP
>NZ_CP009449.1|WP_003908247.1|3845844_3846084_+|hypothetical-protein
MTAADWHTAYHGLMLAPDPARQARRPSTQPNAHLSAECAAMNRNHFTGREVCGHANRTLGLTSTAIALRRVDAGRHNKQ
>NZ_CP009449.1|WP_003418339.1|3845106_3845787_+|cutinase
MIPRPQPHSGRWRAGAARRLTSLVAAAFAAATLLLTPALAPPASAGCPDAEVVFARGTGEPPGLGRVGQAFVSSLRQQTNKSIGTYGVNYPANGDFLAAADGANDASDHIQQMASACRATRLVLGGYSQGAAVIDIVTAAPLPGLGFTQPLPPAADDHIAAIALFGNPSGRAGGLMSALTPQFGSKTINLCNNGDPICSDGNRWRAHLGYVPGMTNQAARFVASRI
>NZ_CP009449.1|WP_003418336.1|3844271_3845060_+|cutinase
MNNRPIRLLTSGRAGLGAGALITAVVLLIALGAVWTPVAFADGCPDAEVTFARGTGEPPGIGRVGQAFVDSLRQQTGMEIGVYPVNYAASRLQLHGGDGANDAISHIKSMASSCPNTKLVLGGYSQGATVIDIVAGVPLGSISFGSPLPAAYADNVAAVAVFGNPSNRAGGSLSSLSPLFGSKAIDLCNPTDPICHVGPGNEFSGHIDGYIPTYTTQAASFVVQRLRAGSVPHLPGSVPQLPGSVLQMPGTAAPAPESLHGR
>NZ_CP009449.1|WP_003418333.1|3842738_3844151_-|type-VII-secretion-system-ESX-4-subunit-EccB4
MPSPATTWLHVSGYRFLLRRIECALLFGDVCAATGALRARTTSLALGCVLAIVAAMGCAFVALLRPQSALGQAPIVMGRESGALYVRVDDVWHPVLNLASARLIAATNANPQPVSESELGHTKRGPLLGIPGAPQLLDQPLAGAESAWAICDSDNGGSTTVVVGPAEDSSAQVLTAEQMILVATESGSPTYLLYGGRRAVVDLADPAVVWALRLQGRVPHVVAQSLLNAVPEAPRITAPRIRGGGRASVGLPGFLVGGVVRITRASGDEYYVVLEDGVQRIGQVAADLLRFGDSQGSVNVPTVAPDVIRVAPIVNTLPVSAFPDRPPTPVDGSPGRAVTTLCVTWTPAQPGAARVAFLAGSGPPVPLGGVPVTLAQADGRGPALDAVYLPPGRSAYVAARSLSGGGTGTRYLVTDTGVRFAIHDDDVAHDLGLPTAAIPAPWPVLATLPSGPELSRANASVARDTVAPGP
>NZ_CP009449.1|WP_003418331.1|3841406_3842774_+|type-VII-secretion-system-ESX-4-serine-protease-mycosin-MycP4
MTTSRTLRLLVVSALATLSGLGTPVAHAVSPPPIDERWLPESALPAPPRPTVQREVCTEVTAESGRAFGRAERSAQLADLDQVWRLTRGAGQRVAVIDTGVARHRRLPKVVAGGDYVFTGDGTADCDAHGTLVAGIIAAAPDAQSDNFSGVAPDVTLISIRQSSSKFAPVGDPSSTGVGDVDTMAKAVRTAADLGASVINISSIACVPAAAAPDDRALGAALAYAVDVKNAVIVAAAGNTGGAAQCPPQAPGVTRDSVTVAVSPAWYDDYVLTVGSVNAQGEPSAFTLAGPWVDVAATGEAVTSLSPFGDGTVNRLGGQHGSIPISGTSYAAPVVSGLAALIRARFPTLTARQVMQRIESTAHHPPAGWDPLVGNGTVDALAAVSSDSIPQAGTATSDPAPVAVPVPRRSTPGPSDRRALHTAFAGAAICLLALMATLATASRRLRPGRNGIAGD
>NZ_CP009449.1|WP_010950890.1|3840006_3841410_+|type-VII-secretion-system-ESX-4-subunit-EccD4
MPTSDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAARYQLSALGAPALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRLSGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPIAGLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVACCAVVVAAATLVGAITAAPVPAIGSLDTLASFGLLEVSARMAVLLAGLSPRLPPALNPDDADALPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGALLLLRARSADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMFLGFVAPALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDLTWT
>NZ_CP009449.1|WP_003418354.1|3850311_3850917_-|30S-ribosomal-protein-S4
MARYTGPVTRKSRRLRTDLVGGDQAFEKRPYPPGQHGRARIKESEYLLQLQEKQKARFTYGVMEKQFRRYYEEAVRQPGKTGEELLKILESRLDNVIYRAGLARTRRMARQLVSHGHFNVNGVHVNVPSYRVSQYDIVDVRDKSLNTVPFQIARETAGERPIPSWLQVVGERQRVLIHQLPERAQIDVPLTEQLIVEYYSK
>NZ_CP009449.1|WP_003418357.1|3850925_3851345_-|30S-ribosomal-protein-S11
MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPPNRRRV
>NZ_CP009449.1|WP_003418360.1|3851348_3851723_-|30S-ribosomal-protein-S13
MARLVGVDLPRDKRMEVALTYIFGIGRTRSNEILAATGIDRDLRTRDLTEEQLIHLRDYIEANLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGMPVRGQRTKTNARTRKGPKRTIAGKKKAR
>NZ_CP009449.1|WP_003418367.1|3851938_3852052_-|50S-ribosomal-protein-L36
MKVNPSVKPICDKCRLIRRHGRVMVICSDPRHKQRQG
>NZ_CP009449.1|WP_003418601.1|3852084_3852306_-|translation-initiation-factor-IF-1
MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIVYRYK
>NZ_CP009449.1|WP_003418604.1|3852559_3853417_+|TIGR03620-family-F420-dependent-LLM-class-oxidoreductase
MTNCAAGKPSSGPNLGRFGSFGRGVTPQQATEIEALGYGAVWVGGSPPAALSWVEPILQATTTLCVATGIVNIWSAPAQRVAESFHRIEAAYPGRFLLGIGVGHAEMISEYRKPYNALVEYLDRLDDYGVPANRRVVAALGPRVLGLSARRSAGAHPYLTTPEHTARARELIGPSAFLAPEHKVVLTTDSARARTVGRQALDMYFNLANYRNNWKRLGFTDDEVSRPGSDRLVDAVVAYGTPDAIAARLNEHLLAGADHVPIQVLTEDDNLVSALTELAKPLRLT
>NZ_CP009449.1|WP_003418607.1|3853489_3854485_+|dTDP-glucose-4,6-dehydratase
MRLLVTGGAGFIGTNFVHSAVREHPDDAVTVLDALTYAGRRESLADVEDAIRLVQGDITDAELVSQLVAESDAVVHFAAESHVDNALDNPEPFLHTNVIGTFTILEAVRRHGVRLHHISTDEVYGDLELDDRARFTESTPYNPSSPYSATKAGADMLVRAWVRSYGVRATISNCSNNYGPYQHVEKFIPRQITNVLTGRRPKLYGAGANVRDWIHVDDHNSAVRRILDRGRIGRTYLISSEGERDNLTVLRTLLRLMDRDPDDFDHVTDRVGHDLRYAIDPSTLYDELCWAPKHTDFEEGLRTTIDWYRDNESWWRPLKDATEARYQERGQ
>NZ_CP009449.1|WP_003418610.1|3854486_3855095_+|dTDP-4-dehydrorhamnose-3,5-epimerase
MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDVRASGLLPRWEQTQRFIGEMRGT
>NZ_CP009449.1|WP_010950893.1|3855616_3856570_+|HNH-endonuclease
MSTRQAAEADLAGKAAQYRPDELARYAQRVMDWLHPDGDLTDTERARKRGITLSNQQYDGMSRLSGYLTPQARATFEAVLAKLAAPGATNPDDHTPVIDTTPDAAAIDRDTRSQAQRNHDGLLAGLRALIASGELGQHNGLPVSIVVTTTLTDLQTGAGKGFTGGGTLLPMADVIRMTSHAHHYSPASGRYPQAIFDHGTPLALYHTKRLASPAQRIMLFANDRGCTKPGCDAPAYHSQAHHVTGWTSTGRTDITELTLACDPDNRLAEKGWTTRKNTHGHTEWLPPPHLDHGQPRTNTFHHPERFLHNQDDDDEPD
>NZ_CP009449.1|WP_003900066.1|3856627_3857722_-|NAD(P)-dependent-oxidoreductase
MGTHAATMRVRAGVRSSPLLLHAGTPPTAAAAESGMRTLVTGSSGHLGEALVRTLRARGADVVSLDSRPSRYTNIVGCVSDRALLRDVMAGVEVVFHAAAHHKPQLAFLPRQAFLDTNIIGTQTVLDAAVAANVRAFVMTSSTTVFGDALTPPADQPAAWIDESVTPIPKNIYGVTKASSEDLCQLAHRNDGLACVVLRVARFFVEGDDMPDLYDGRSQDNIKANEYACRRVALEDAVDAHLNAAQRAPQLGFGRYLVSATTPFTRDDLTQLRTDAASVFARRVPLAAAVWTQRGWRFPDRLDRVYVNSRARRDLNWRPRFDLNAVAARLARGQSVHTPLSQLVGSKAYAHSSYHRGVFAPARP

Crispr_ID: NZ_CP009449_11

• CRISPR_ID: NZ_CP009449_11
• CRISPR_location: 3914171-3915187
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 13 spacers

Consensus repeat of NZ_CP009449_11

Consensus_repeat	Method
TCGGCGCCGGCCCCGCCGGCTCCGCCGGCTCCGCCTTGTCCG	PILER-CR
GNNNCGGCGGNNCCGGCGGNNCCGGCGG	CRT

spacers of NZ_CP009449_11

>11.1|3914213|40|NZ_CP009449|PILER-CR
CGCCGACCAGCCCGGCGCCACCGGCGGCACCGGGTTCGCC
>11.2|3914295|52|NZ_CP009449|PILER-CR
GTAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGGCGCCGGCGGCACCGG
>11.3|3914210|47|NZ_CP009449|CRT
CGACGCCGACCAGCCCGGCGCCACCGGCGGCACCGGGTTCGCCGGTG
>11.4|3914285|62|NZ_CP009449|CRT
TAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGGCGCCGGCGGCACCGGCGGACAAGGCG
>11.5|3914375|68|NZ_CP009449|CRT
CGATAACCCCACCGGCATCGGCGGCACCGGCGGTGACGGCGGCACCGGCGGAGCGGCCGGAGCCGGCG
>11.6|3914471|62|NZ_CP009449|CRT
CACCGGCGGCATGATCGGCACCACAGGCAACGCCGGTGTCGGCGGGGCCGGCGGCCAAGGCG
>11.7|3914561|47|NZ_CP009449|CRT
CGACGCCGACCAGCCCGGCGCCACCGGCGGCACCGGGTTCGCCGGTG
>11.8|3914636|26|NZ_CP009449|CRT
TAGCAGCGGTGCCGGCGGCACCAACG
>11.9|3914690|44|NZ_CP009449|CRT
ACAAGGCGGCGCCGGGGGTGCTGGCATCAGCTTCAGCAACGGCA
>11.10|3914762|56|NZ_CP009449|CRT
CGTGGGCGGCACCGGGGGCGACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCG
>11.11|3914846|35|NZ_CP009449|CRT
CAGCGGCGGGGCCGGCGGGGGGGGCGGGGCCAACT
>11.12|3914909|44|NZ_CP009449|CRT
CACCGGCGGCACCGGCGGCAAAGGCGGCATGGGCGGCATCGCTG
>11.13|3914981|62|NZ_CP009449|CRT
CAACGCCGGGGGCGGGGGAAAAGGCGGCACCAACGGCAACGGCGGCAGCGGCGGGACCGGCG
>11.14|3915071|26|NZ_CP009449|CRT
CGCGCCCACCGGCAGCGGCACCGGCG
>11.15|3915125|35|NZ_CP009449|CRT
CGATGGCGCCGACGGAGGGGCAGCCACCGGCGTCG

CRISPR arrays and Neighbor proteins around NZ_CP009449_11

CRISPR arrays

The CRISPR arrays of NZ_CP009449_11

>merge|NZ_CP009449|11|3914171-3915187|PILER-CR,CRT
CGGCCAAGGCGGTGACGGCGGAGCCGGCGGGGCCGGCGCCGACGCCGACCAGCCCGGCGCCACCGGCGGCACCGGGTTCGCCGGTGGAGCCGGCGGAGCCGGCGGGGCCGGCGGTAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGGCGCCGGCGGCACCGGCGGACAAGGCGGCGCCGGGGGTGCTGGCGGGGCCGGCGCCGATAACCCCACCGGCATCGGCGGCACCGGCGGTGACGGCGGCACCGGCGGAGCGGCCGGAGCCGGCGGGGCCGGCGGAGCGGCCGGCACCGGCGGCACCGGCGGCATGATCGGCACCACAGGCAACGCCGGTGTCGGCGGGGCCGGCGGCCAAGGCGGTGACGGCGGAGCCGGCGGGGCCGGCGCCGACGCCGACCAGCCCGGCGCCACCGGCGGCACCGGGTTCGCCGGTGGAGCCGGCGGGGCCGGCGGGGCCGGCGGTAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGGCGCCGGCGGCACCGGCGGACAAGGCGGCGCCGGGGGTGCTGGCATCAGCTTCAGCAACGGCAGCAACGGCGGCACCGGCGGCACCGGGGGCGTGGGCGGCACCGGGGGCGACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCGGCAAAGGCGGCACCGGCGGCACCGGCGGCAGCGGCGGGGCCGGCGGGGGGGGCGGGGCCAACTTCAACGGCGGCACCGGCGGCACCGGCGGCACCGGCGGCACCGGCGGCAAAGGCGGCATGGGCGGCATCGCTGGCGACGGCGGGCCCGGCGGTGACGGCGGCAACGCCGGGGGCGGGGGAAAAGGCGGCACCAACGGCAACGGCGGCAGCGGCGGGACCGGCGGCACAGGCGGGCCCGGCGGCAGCGGCGGCGCGCCCACCGGCAGCGGCACCGGCGGCAAAGGCGGCGCCGGCGGTGACGGCGGCGATGGCGCCGACGGAGGGGCAGCCACCGGCGTCGGCGACGGCGGCGACGGTGGTAACGGTGG

>NZ_CP009449|11|7|3914171-3914377|PILER-CR
CGGCCAAGGCGGTGACGGCGGAGCCGGCGGGGCCGGCGCCGA	CGCCGACCAGCCCGGCGCCACCGGCGGCACCGGGTTCGCC
GGTGGAGCCGGCGGAGCCGGCGGGGCCGGCGGTAGCAGCGGT	GCCGGCGGCACCAACGGCTCCGGCGGCGCCGGCGGCACCGGCGGACAAGGCG
GCGCCGGGGGTGCTGGCGGGGCCGGCGCCGA

>NZ_CP009449|11|4|3914182-3915187|CRT
GTGACGGCGGAGCCGGCGGGGCCGGCGC	CGACGCCGACCAGCCCGGCGCCACCGGCGGCACCGGGTTCGCCGGTG
GAGCCGGCGGAGCCGGCGGGGCCGGCGG	TAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGGCGCCGGCGGCACCGGCGGACAAGGCG
GCGCCGGGGGTGCTGGCGGGGCCGGCGC	CGATAACCCCACCGGCATCGGCGGCACCGGCGGTGACGGCGGCACCGGCGGAGCGGCCGGAGCCGGCG
GGGCCGGCGGAGCGGCCGGCACCGGCGG	CACCGGCGGCATGATCGGCACCACAGGCAACGCCGGTGTCGGCGGGGCCGGCGGCCAAGGCG
GTGACGGCGGAGCCGGCGGGGCCGGCGC	CGACGCCGACCAGCCCGGCGCCACCGGCGGCACCGGGTTCGCCGGTG
GAGCCGGCGGGGCCGGCGGGGCCGGCGG	TAGCAGCGGTGCCGGCGGCACCAACG
GCTCCGGCGGCGCCGGCGGCACCGGCGG	ACAAGGCGGCGCCGGGGGTGCTGGCATCAGCTTCAGCAACGGCA
GCAACGGCGGCACCGGCGGCACCGGGGG	CGTGGGCGGCACCGGGGGCGACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCG
GCAAAGGCGGCACCGGCGGCACCGGCGG	CAGCGGCGGGGCCGGCGGGGGGGGCGGGGCCAACT
TCAACGGCGGCACCGGCGGCACCGGCGG	CACCGGCGGCACCGGCGGCAAAGGCGGCATGGGCGGCATCGCTG
GCGACGGCGGGCCCGGCGGTGACGGCGG	CAACGCCGGGGGCGGGGGAAAAGGCGGCACCAACGGCAACGGCGGCAGCGGCGGGACCGGCG
GCACAGGCGGGCCCGGCGGCAGCGGCGG	CGCGCCCACCGGCAGCGGCACCGGCG
GCAAAGGCGGCGCCGGCGGTGACGGCGG	CGATGGCGCCGACGGAGGGGCAGCCACCGGCGTCG
GCGACGGCGGCGACGGTGGTAACGGTGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009449.1|WP_003901661.1|3922591_3923503_+|DNA-binding-protein	unknown	unknown	gnl|CDD|224462
NZ_CP009449.1|WP_003418990.1|3890666_3891620_-|3-oxoacyl-ACP-reductase	unknown	unknown	gnl|CDD|181120
NZ_CP009449.1|WP_003418997.1|3892050_3893253_+|acyl-CoA-dehydrogenase	unknown	unknown	gnl|CDD|173841
NZ_CP009449.1|WP_010950903.1|3893277_3894399_+|acyl-CoA-dehydrogenase	unknown	unknown	gnl|CDD|224871
NZ_CP009449.1|WP_003418986.1|3889676_3890441_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|223838
NZ_CP009449.1|WP_003418993.1|3891644_3891836_-|ferredoxin	unknown	unknown	gnl|CDD|224064
NZ_CP009449.1|WP_003900872.1|3904818_3906366_-|hypothetical-protein	unknown	unknown	gnl|CDD|236063
NZ_CP009449.1|WP_003901660.1|3915895_3917542_-|acyl-CoA-synthetase	unknown	unknown	gnl|CDD|236100
NZ_CP009449.1|WP_003419199.1|3923518_3924583_+|lipid-transfer-protein	unknown	unknown	gnl|CDD|181173
NZ_CP009449.1|WP_003419184.1|3918502_3919342_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003421145.1|3906362_3907199_-|hypothetical-protein	unknown	unknown	gnl|CDD|225070
NZ_CP009449.1|WP_003419190.1|3920620_3921331_+|hypothetical-protein	unknown	unknown	gnl|CDD|377649
NZ_CP009449.1|WP_038438777.1|3896148_3900270_+|PE-family-protein	unknown	unknown	gnl|CDD|376422
NZ_CP009449.1|WP_003901662.1|3924599_3925784_+|acetyl-CoA-acetyltransferase	unknown	unknown	gnl|CDD|181378
NZ_CP009449.1|WP_003419207.1|3925825_3926857_+|membrane-protein	unknown	unknown	gnl|CDD|271322
NZ_CP009449.1|WP_003419179.1|3917615_3918407_+|enoyl-CoA-hydratase	unknown	unknown	gnl|CDD|181122
NZ_CP009449.1|WP_003900084.1|3921395_3922439_-|LLM-class-F420-dependent-oxidoreductase	unknown	unknown	gnl|CDD|274647
NZ_CP009449.1|WP_003902513.1|3912773_3913430_-|fatty-acid--CoA-ligase	unknown	unknown	gnl|CDD|236100
NZ_CP009449.1|WP_003901655.1|3894469_3895978_+|long-chain-fatty-acid--CoA-ligase-FadD17	unknown	unknown	gnl|CDD|236120
NZ_CP009449.1|WP_003908265.1|3915680_3915899_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP009449.1|WP_003901661.1|3922591_3923503_+|DNA-binding-protein	gnl|CDD|224462	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only].	9.89177e-41
NZ_CP009449.1|WP_003418990.1|3890666_3891620_-|3-oxoacyl-ACP-reductase	gnl|CDD|181120	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional.	2.1253e-180
NZ_CP009449.1|WP_003418997.1|3892050_3893253_+|acyl-CoA-dehydrogenase	gnl|CDD|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	4.72908e-173
NZ_CP009449.1|WP_010950903.1|3893277_3894399_+|acyl-CoA-dehydrogenase	gnl|CDD|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	3.79645e-48
NZ_CP009449.1|WP_003418986.1|3889676_3890441_-|ABC-transporter-permease	gnl|CDD|223838	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	5.65389e-88
NZ_CP009449.1|WP_003418993.1|3891644_3891836_-|ferredoxin	gnl|CDD|224064	COG1141, Fer, Ferredoxin [Energy production and conversion].	6.5974e-14
NZ_CP009449.1|WP_003900084.1|3921395_3922439_-|LLM-class-F420-dependent-oxidoreductase	gnl|CDD|274647	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family. Members of this protein family are predicted to be oxidoreductases dependent on coenzyme F420. The family includes a single member in Mycobacterium tuberculosis (Rv3520c/MT3621) but four in Mycobacterium smegmatis. Prediction that this family is F420-dependent is based primarily on Partial Phylogenetic Profiling vs. F420 biosynthesis. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP009449.1|WP_003901660.1|3915895_3917542_-|acyl-CoA-synthetase	gnl|CDD|236100	PRK07798, PRK07798, acyl-CoA synthetase; Validated.	0
NZ_CP009449.1|WP_003419199.1|3923518_3924583_+|lipid-transfer-protein	gnl|CDD|181173	PRK07937, PRK07937, lipid-transfer protein; Provisional.	0
NZ_CP009449.1|WP_003421145.1|3906362_3907199_-|hypothetical-protein	gnl|CDD|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	2.24025e-81
NZ_CP009449.1|WP_003419190.1|3920620_3921331_+|hypothetical-protein	gnl|CDD|377649	pfam06314, ADC, Acetoacetate decarboxylase (ADC). This family consists of several acetoacetate decarboxylase (ADC) proteins (EC:4.1.1.4).	8.3862e-27
NZ_CP009449.1|WP_038438777.1|3896148_3900270_+|PE-family-protein	gnl|CDD|376422	pfam00934, PE, PE family. This family named after a PE motif near to the amino terminus of the domain. The PE family of proteins all contain an amino-terminal region of about 110 amino acids. The carboxyl terminus of this family are variable and fall into several classes. The largest class of PE proteins is the highly repetitive PGRS class which have a high glycine content. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	3.08512e-31
NZ_CP009449.1|WP_003901662.1|3924599_3925784_+|acetyl-CoA-acetyltransferase	gnl|CDD|181378	PRK08313, PRK08313, thiolase domain-containing protein.	0
NZ_CP009449.1|WP_003419207.1|3925825_3926857_+|membrane-protein	gnl|CDD|271322	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD. PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.	3.56986e-118
NZ_CP009449.1|WP_003419179.1|3917615_3918407_+|enoyl-CoA-hydratase	gnl|CDD|181122	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein.	0
NZ_CP009449.1|WP_003902513.1|3912773_3913430_-|fatty-acid--CoA-ligase	gnl|CDD|236100	PRK07798, PRK07798, acyl-CoA synthetase; Validated.	8.05622e-104
NZ_CP009449.1|WP_003901655.1|3894469_3895978_+|long-chain-fatty-acid--CoA-ligase-FadD17	gnl|CDD|236120	PRK07867, PRK07867, acyl-CoA synthetase; Validated.	0
NZ_CP009449.1|WP_003900872.1|3904818_3906366_-|hypothetical-protein	gnl|CDD|236063	PRK07586, PRK07586, acetolactate synthase large subunit.	0

Protein sequences

>NZ_CP009449.1|WP_003902513.1|3912773_3913430_-|fatty-acid--CoA-ligase
MAASLSENLSCHSSNMCRLSGNAATNLERPGEEPPGDRCTRRQAVRPARTLAKKGNIPVGYYKDEKKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALKGHPDVFDALVVGVPDPRYGQQVAAVVQARPGCRPSLAELDSFVRSEIAGYKVPRSLWFVDEVKRSPAGKPDYRWAKEQTEARPADDVHAGHVTSGS
>NZ_CP009449.1|WP_003421145.1|3906362_3907199_-|hypothetical-protein
MTIDVWMQHPTQRFLHGDMFASLRRWTGGSIPETDIPIEATVSSMDAGGVTLGLLSAWRGPNGQDLISNDAVAEWVRLYPNRFAGLAAVDLDRPMAAVRELRRRVGEGFVGLRVVPWLWGAPPTDRRYYPLFAECVQSAVPFCTQVGHTGPLRPSETGRPIPYIDQVALDFPELVIVCGHVGYPWTEEMVAVARKHENVYIDTSAYTIKRLPGKLVRFMKTDTGQRKVLFGTNYPMIAHTHALTGLDELGLSDEARRDFLHGNAVRVFKLDPRGKVQT
>NZ_CP009449.1|WP_003900872.1|3904818_3906366_-|hypothetical-protein
MNGAQALINTLVDGGVDVCFANPGTSEMHFVAALDAVPRMRGMLTLFEGVATGAADGYARIAGRPAAVLLHLGPGLGNGLANLHNARRARVPMVVVVGDHATYHKKYDAPLESDIDAVAGTVSGWVRRTEAAADVGADAEAAIAASRSGSQIATLILPADVCWSDGAHAAAGVPAQAAAAPVDVGPVAGVLRSGEPAMMLIGGDATRGPGLTAAARIVQATGARWLCETFPTCLERGAGIPAVERLAYFAEGAAAQLDGVKHLVLAGARSPVSFFAYPGMPSDLVPAGCEVHVLAEPGGAADALAALADEVAPGTVAPVAGASRPQLPTGDLTSVSAADVVGALLPERAIVVDESNTCGVLLPQATAGAPAHDWLTLTGGAIGYGIPAAVGAAVAAPDRPVLCLESDGSAMYTISGLWSQARENLDVTTVIYNNGAYDILRIELQRVGAGSDPGPKALDLLDISRPTMDFVKIAEGMGVPARRVTTCEEFADALRAAFAEPGPHLIDVVVPSLVG
>NZ_CP009449.1|WP_038438777.1|3896148_3900270_+|PE-family-protein
MSFVLVSPETVAAVATDLKRIGASLAHENASAAASTTAVVSAAADEVSTAVAALFSQHAQGYQAAAAQVAAFHSRFVQALTAGAGAYAFAEAANASPLQSAMGAVSASAQTLLSRPLIGNGANATTPGGNGGDGGWLFGSGGNGAPGAAGQSGGNGGSAGRWGNGGAGGAGGSGGAAGGNGGNGGWLFGAGGTGGIGGTGAPGAMGGTGGNGGNGALLIGGGGLGGAGGMGGTGGGTGGTGGNGGNGALLIGAGGVGGAGGIGGQGTGAGGAAGAGGTGGNGGAGGLFMNGGDGGAGGQGGDGAAGDAAASAGGTGGKGGQGGDGGTGGAGGAGPVLFGHGGAGGMGGQGGTGGMGGAGGDGTTVIAAGTGGEGGTGGTGGTGGNGADAAAVVGFGANGDPGFAGGKGGNGGIGGAAVTGGVAGDGGTGGKGGTGGAGGAGNDAGSTGNPGGKGGDGGIGGAGGAGGAAGTGNGGHAGNTGDGGDGGTGGNGGNGTGGVNGADNTLNPDTPGGAGEPGGAGGAGGAGGPAGGPGGTGGTGGNGGKARQNSTNGGNAGNNSTNAPVGGEGGAGGDGGAGGAGGAADGGPAGSQGTGGGGGDGGAGGDGGGGKAGTGNSGNFGVDGEAGFSGGAGGNGGVGGAAGANGGTGGGGGNGGGGGGGGGGGAGGNGIPGTGTEPAGGTGAKGGDGGDGGAGGAGGNAGGAGGNGGAGGQGGKAGRGGAGGAGGNAVIPGDGVGKAPHGGAGGSGGDGGKGGQGGSGGTGGSGAPIGGGAGGTGGSGGHAGKGGAGGIGAQGTTITVPGNGGNAGDGGNGGGGGAGGTGGDGATGTPAGNGGDGGNGGNAGDGGNGGSGDFGGNTTSGASGSGGNGGNAGTAGSGGAGGTGGTGLSGGNGGNGGDGGNGAHGTVGAQFVPATSLPTPNGGAGGNGGTGSNGGAPGPAGAPGPTTGGNAGSQGIGGDGGNGGDGGKGGDGADAVNVVFMPTEPQAATGTAGSAGDPTGGNGGPGTPGSPMVAPPPPTPITQVQQGGDGGAGGTGSTNANDGTATGGKGGEGGVGSILGGPGGNGGTGGNASATGTNGGANAGNGGKGGDGGQFGAGGNGGAGGSVTDGSAGSTAGNGGNGGNATNGTIAGQPAGGNGSAGGKGGDGGNIAAGATGTAGNGGNGGNGNDGAVNAGTGGSGGNGGNAGGGGANGGDGGAGGAGGAGGRGGKGIDGGFGGDGGNGGSNNGTGAGGNGGNGGTGGVGSVGAAGGDGGNGGTGGFAGFGGTAGNGGSGGTGGAGGDGGTGGGGGNGGTGVIAGGGGTGGNGGASGAGGAGGTGGFAGNGNAGGNGGTGGASEDGDNGNAGSGATGGTGGNGGTGGDGGAAGLGGVA
>NZ_CP009449.1|WP_003901655.1|3894469_3895978_+|long-chain-fatty-acid--CoA-ligase-FadD17
MTPTHPTVTELLLPLSEIDDRGVYFEDSFTSWRDHIRHGAAIAAALRERLDPARPPHVGVLLQNTPFFSATLVAGALSGIVPVGLNPVRRGAALAGDIAKADCQLVLTGSGSAEVPADVEHINVDSPEWTDEVAAHRDTEVRFRSADLADLFMLIFTSGTSGDPKAVKCSHRKVAIAGVTITQRFSLGRDDVCYVSMPLFHSNAVLVGWAVAAACQGSMALRRKFSASQFLADVRRYGATYANYVGKPLSYVLATPELPDDADNPLRAVYGNEGVPGDIDRFGRRFGCVVMDGFGSTEGGVAITRTLDTPAGALGPLPGGIQIVDPDTGEPCPTGVVGELVNTAGPGGFEGYYNDEAAEAERMAGGVYHSGDLAYRDDAGYAYFAGRLGDWMRVDGENLGTAPIERVLMRYPDATEVAVYPVPDPVVGDQVMAALVLAPGTKFDADKFRAFLTEQPDLGHKQWPSYVRVSAGLPRTMTFKVIKRQLSAEGVACADPVWPIRR
>NZ_CP009449.1|WP_010950903.1|3893277_3894399_+|acyl-CoA-dehydrogenase
MDFTTTEAAQDLGGLVDTIVDAVCTPEHQRELDKLEQRFDRELWRKLIDAGILSSAAPESLGGDGFGVLEQVAVLVALGHQLAAVPYLESVVLAAGALARFGSPELQQGWGVSAVSGDRILTVALDGEMGEGPVQAAGTGHGYRLTGTRTQVGYGPVADAFLVPAETDSGAAVFLVAAGDPGVAVTALATTGLGSVGHLELNGAKVDAARRVGGTDVVVWLGTLSTLSRTAFQLGVLERGLQMTAEYARTREQFDRPIGSFQAVGQRLADGYIDVKGLRLTLTQAAWRVAEDSLASRECPQPADIDVATAGFWAAEAGHRVAHTIVHVHGGVGVDTDHPVHRYFLAAKQTEFALGGATGQLRRIGRELAETPA
>NZ_CP009449.1|WP_003418997.1|3892050_3893253_+|acyl-CoA-dehydrogenase
MRISYTPQQEELRRELRSYFATLMTPERREALSSVQGEYGVGNVYRETIAQMGRDGWLALGWPKEYGGQGRSAMDQLIFTDEAAIAGAPVPFLTINSVAPTIMAYGTDEQKRFFLPRIAAGDLHFSIGYSEPGAGTDLANLRTTAVRDGDDYVVNGQKMWTSLIQYADYVWLAVRTNPESSGAKKHRGISVLIVPTTAEGFSWTPVHTMAGPDTSATYYSDVRVPVANRVGEENAGWKLVTNQLNHERVALVSPAPIFGCLREVREWAQNTKDAGGTRLIDSEWVQLNLARVHAKAEVLKLINWELASSQSGPKDAGPSPADASAAKVFGTELATEAYRLLMEVLGTAATLRQNSPGALLRGRVERMHRACLILTFGGGTNEVQRDIIGMVALGLPRANR
>NZ_CP009449.1|WP_003418993.1|3891644_3891836_-|ferredoxin
MRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALSRGE
>NZ_CP009449.1|WP_003418990.1|3890666_3891620_-|3-oxoacyl-ACP-reductase
MKLTESNRSPRTTNTTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVVDEIGAAAADAGAKAVAVAGDISQRATADELLASAVGLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRDKAKDAEGGSVFGRLVNTSSEAGLVGPVGQANYAAAKAGITALTLSAARALGRYGVCANVICPRARTAMTADVFGAAPDVEAGQIDPLSPQHVVSLVQFLASPAAAEVNGQVFIVYGPQVTLVSPPHMERRFSADGTSWDPTELTATLRDYFAGRDPEQSFSATDLMRQ
>NZ_CP009449.1|WP_003418986.1|3889676_3890441_-|ABC-transporter-permease
MIQQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINVVMTAIGVRISAQ
>NZ_CP009449.1|WP_003908265.1|3915680_3915899_-|hypothetical-protein
MMGAAATGSGHPARKVDMGRLSCLSGAEPTSMWMEVRHGCSRASRNSCGGFAEAGPHLIDGHRAALPGVAIG
>NZ_CP009449.1|WP_003901660.1|3915895_3917542_-|acyl-CoA-synthetase
MAVALNIADLAEHAIDAVPDRVAVICGDEQLTYAQLEDKANRLAHHLIDQGVQKDDKVGLYCRNRIEIVIAMLGIVKAGAILVNVNFRYVEGELRYLFDNSDMVALVHERRYADRVANVLPDTPHVRTILVVEDGSDQDYRRYGGVEFYSAIAAGSPERDFGERSADAIYLLYTGGTTGFPKGVMWRHEDIYRVLFGGTDFATGEFVKDEYDLAKAAAANPPMIRYPIPPMIHGATQSATWMALFSGQTTVLAPEFNADEVWRTIHKHKVNLLFFTGDAMARPLVDALVKGNDYDLSSLFLLASTAALFSPSIKEKLLELLPNRVITDSIGSSETGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKPGSGMRGVIAKKGNIPVGYYKDEKKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALKGHPDVFDALVVGVPDPRYGQQVAAVVQARPGCRPSLAELDSFVRSEIAGYKVPRSLWFVDEVKRSPAGKPDYRWAKEQTEARPADDVHAGHVTSGG
>NZ_CP009449.1|WP_003419179.1|3917615_3918407_+|enoyl-CoA-hydratase
MESGPDALVERRGHTLIVTMNRPAARNALSTEMMRIMVQAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATQKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLYPMGGSAVRLVRQIPYTLACDLLLTGRHITAAEAKEMGLIGHVVPDGQALTKALELADAISANGPLAVQAILRSIRETECMPENEAFKIDTQIGIKVFLSDDAKEGPRAFAEKRAPNFQNR
>NZ_CP009449.1|WP_003419184.1|3918502_3919342_+|hypothetical-protein
MIEPFLGSEAIASGALTRHRLRSAYATIHPDVYVSPGADLTAWSRAQAAWLWSRRRGVIAGQSAAAMHGAKWVDARQAAELLYDHRRPPAGIHTWSDRVADDEIQPISGMNTTTPARTALDLARRYPVGKAVAAIDALARATDLKLADVEMLAERYRGSRGIRNARIALDLVDPGAESPRETWLRLLLIRAGFPRPQTQIPVYDEYGQLVAVIDMGWAGIKVGVDYEGDHHRTDRRTFNKDIKRAEALTELGWTDVRVTVEDTEGGIIWRVSAAWQRRT
>NZ_CP009449.1|WP_003419190.1|3920620_3921331_+|hypothetical-protein
MPVSQHTIAGTVLTMPVRIRTANLHSAMFSVPADPAQRLIDYSGLRVCEYLPGKAIVMQMLVRYVDGDLGRYHEYGTAIMVNPPGTQRRGPRALTRAAAFIHHLPVDQVFTLEAGRTIWGFPKIMADFNVTDGRRFGFDVSADGRLIAGIEFSTGLPVPTLGWQMLKTYSHHDGVTREIPWEMKVSGLRARLGGARLRLGDHPYAKELASLGLPKRALLSQSAANVEMTFGDGHPI
>NZ_CP009449.1|WP_003900084.1|3921395_3922439_-|LLM-class-F420-dependent-oxidoreductase
MEAGMKLGLQLGYWGAQPPQNHAELVAAAEDAGFDTVFTAEAWGSDAYTPLAWWGSSTQRVRLGTSVIQLSARTPTACAMAALTLDHLSGGRHILGLGVSGPQVVEGWYGQRFPKPLARTREYIDIVRQVWARESPVTSAGPHYRLPLTGEGTTGLGKALKPITHPLRADIPIMLGAEGPKNVALAAEICDGWLPIFYSPRMAGMYNEWLDEGFARPGARRSREDFEICATAQVVITDDRAAAFAGIKPFLALYMGGMGAEETNFHADVYRRMGYTQVVDEVTKLFRSGRKDEAAEIIPDELVDDAVIVGDIDHVRKQMAVWEAAGVTMMVVTAGSAEQVRDLAALV
>NZ_CP009449.1|WP_003901661.1|3922591_3923503_+|DNA-binding-protein
MGPTLSRFFTALRARRIVGVRGSDGRVHVPPVEYDPVTYEPLSEMVPVSSVGTVASWTWQPEPLAGQPLDRPFAWALIKLDGADTLLMHAVDVGTAGPSAIHTGARVHAHWADQPVGAITDIACFALGETAEPVAAHKTEDARDPVTMIVTPIQLEIQHTASHEESAYLRAIAQGKLVGARTGKTGKVYFPPHGADPATGKPTSEFVELPDKGTVTTFAIVNIPFLGQRIKPPYVAAYVLLDGADIPFLHLVSDVDAHQVRMGMRVEAVWKPRERWGLGIDNIEYFRPTGEPDADYDTYKHHL
>NZ_CP009449.1|WP_003419199.1|3923518_3924583_+|lipid-transfer-protein
MSVRDIAVVGFAHAPHVRRTDGTTNGVEMLMPCFAQLYDELGITKADIGFWCSGSSDYLAGRAFSFISAIDSIGAVPPINESHVEMDAAWALYEAYIKLLTGEVDTALVYGFGKSSAGTLRRVLSRQTDPYTVAPLWPDSVSMAGLQARLGLDSGKWTHEQMARVAFDSFTNARRVDSVEPPITVGELLARPFFADPLRRHDIAPITDGAAAVVLAADNRARELRENPAWITGIEHRIESPALGARDITESPSTKLAAKIATGGHTGDIDVAEIHGPFTHQHLIVAEAIRIPGKTKVNPSGGPLAANPMFAAGLERIGFAAQHIWDGSARRVLAHATSGPALQQNLVAVMEGRG
>NZ_CP009449.1|WP_003901662.1|3924599_3925784_+|acetyl-CoA-acetyltransferase
MAGKLAAVLGTGQTKYVAKRQDVSMNGLVREAIDRALADSGSTFDDIDAVVVGKAPDFFEGVMMPELFMADAMGATGKPLIRVHTAGSVGGSTGVVAASLVQSGKYRRVLALAWEKQSESNAMWALSIPVPFTKPVGAGAGGYFAPHVRAYIRRSGAPAHIGAMVAVKDRLNGSRNPLAHLQQPDITLEKVMASQMLWDPIRFDETCPSSDGACAVVVGDEEIADARLAQGHPVAWIHGTALRTEPLAFAGRDQVNPQAGRDAAAALWKAAGITSPIDEIDAAEIYVPFSWFEPMWLENLGFAREGEGWKLTEAGETAIGGRLPVNPSGGVLSANPIGASGLIRFAEAAIQVMGKAEARQVPGARKALGHAYGGGSQYFSMWVVGCEKPKQAAA
>NZ_CP009449.1|WP_003419207.1|3925825_3926857_+|membrane-protein
MVKFTPDSQTSVLRAGKCSGTLSPSRSRLQRGSWPVDSERRRYGWPRNRRTLAITGAAVVVVVTLAAIGYLIFEPKISGSSTSRQAASPTTPSPPSQVVVPIDLWNPDGVTVDLADAVYVADSGHKRLLKLPAGSNTPTTLPFTDTIGPGGVAVNSNRDVYVIDEDSHHVLKLAAGIEPPVELPFGSLGDAHGLAVDRSDSVYVVDYDNAKVLKLPPGADTPTELPFVGLDHPYDVAVDGAGTVYVTDSGHNRVVALTAGSATPVHLPFADLSFPAGVTVDRDDSVYVADLNNNRVLKLAAGSNAQSQLPFTGLFSPTDVAVDNDGAVYVIDFYNRMLKLPTA

Crispr_ID: NZ_CP009449_12

• CRISPR_ID: NZ_CP009449_12
• CRISPR_location: 4069614-4069702
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP009449_12

Consensus_repeat	Method
GCTCGGCGACGATGCGGGCCGGATGACGGCC	CRISPRCasFinder

spacers of NZ_CP009449_12

>12.1|4069645|27|NZ_CP009449|CRISPRCasFinder
CGAGGAGGAGCCGAGCAATCGAACCGA

CRISPR arrays and Neighbor proteins around NZ_CP009449_12

CRISPR arrays

The CRISPR arrays of NZ_CP009449_12

>merge|NZ_CP009449|12|4069614-4069702|CRISPRCasFinder
GCTCGGCGACGATGCGGGCCGGATGACGGCCCGAGGAGGAGCCGAGCAATCGAACCGAGCTCGGCGACGATGCGGGCCGGATGACGGCC

>NZ_CP009449|12|9|4069614-4069702|CRISPRCasFinder
GCTCGGCGACGATGCGGGCCGGATGACGGCC	CGAGGAGGAGCCGAGCAATCGAACCGA
GCTCGGCGACGATGCGGGCCGGATGACGGCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009449.1|WP_003419731.1|4076193_4076988_-|MBL-fold-metallo-hydrolase	unknown	unknown	gnl|CDD|293836
NZ_CP009449.1|WP_003419701.1|4063466_4064393_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|223674
NZ_CP009449.1|WP_003419721.1|4073409_4074093_-|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl|CDD|239264
NZ_CP009449.1|WP_003419714.1|4071257_4072451_-|acid-resistance-periplasmic-serine-protease-MarP	unknown	unknown	gnl|CDD|379142
NZ_CP009449.1|WP_010950923.1|4064394_4066020_-|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|173853
NZ_CP009449.1|WP_003419728.1|4075413_4076088_+|cAMP-receptor-protein	unknown	unknown	gnl|CDD|223736
NZ_CP009449.1|WP_003419733.1|4076994_4077450_-|RidA-family-protein	unknown	unknown	gnl|CDD|100006
NZ_CP009449.1|WP_003419708.1|4068718_4069417_-|protease	unknown	unknown	unknown
NZ_CP009449.1|WP_010950924.1|4066727_4068683_+|acetyl-coenzyme-A-synthetase	unknown	unknown	gnl|CDD|234677
NZ_CP009449.1|WP_077365101.1|4066192_4066462_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003899635.1|4074937_4075315_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003419718.1|4072456_4073278_-|CoA-pyrophosphatase	unknown	unknown	gnl|CDD|239518
NZ_CP009449.1|WP_003419712.1|4070281_4071265_+|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|223669
NZ_CP009449.1|WP_010950922.1|4058582_4059446_+|HAD-IB-family-hydrolase	unknown	unknown	gnl|CDD|273654
NZ_CP009449.1|WP_003419692.1|4060200_4060971_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP009449.1|WP_003419685.1|4057030_4058083_-|hypothetical-protein	unknown	unknown	gnl|CDD|274798
NZ_CP009449.1|WP_003900733.1|4060967_4062614_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224048
NZ_CP009449.1|WP_003419710.1|4069762_4070281_+|phage-holin-family-protein	unknown	unknown	gnl|CDD|377816
NZ_CP009449.1|WP_003419724.1|4074092_4074830_-|endonuclease-III	unknown	unknown	gnl|CDD|223255
NZ_CP009449.1|WP_003419699.1|4062610_4063411_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|224094

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP009449.1|WP_003419731.1|4076193_4076988_-|MBL-fold-metallo-hydrolase	gnl|CDD|293836	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	3.29322e-75
NZ_CP009449.1|WP_003419701.1|4063466_4064393_-|ABC-transporter-permease	gnl|CDD|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	7.57934e-99
NZ_CP009449.1|WP_003419721.1|4073409_4074093_-|TlpA-family-protein-disulfide-reductase	gnl|CDD|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.72736e-22
NZ_CP009449.1|WP_003419714.1|4071257_4072451_-|acid-resistance-periplasmic-serine-protease-MarP	gnl|CDD|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	2.19977e-19
NZ_CP009449.1|WP_010950923.1|4064394_4066020_-|ABC-transporter-substrate-binding-protein	gnl|CDD|173853	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Similar to the ABC-type dipeptide and oligopeptide import systems, nickel transporter is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, which is the initial nickel receptor that controls the chemotactic response away from nickel. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand binding domains of ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.91935e-123
NZ_CP009449.1|WP_003419728.1|4075413_4076088_+|cAMP-receptor-protein	gnl|CDD|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	2.11707e-55
NZ_CP009449.1|WP_003419733.1|4076994_4077450_-|RidA-family-protein	gnl|CDD|100006	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	7.62827e-68
NZ_CP009449.1|WP_010950924.1|4066727_4068683_+|acetyl-coenzyme-A-synthetase	gnl|CDD|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
NZ_CP009449.1|WP_003419718.1|4072456_4073278_-|CoA-pyrophosphatase	gnl|CDD|239518	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.	1.20605e-47
NZ_CP009449.1|WP_003419712.1|4070281_4071265_+|alpha/beta-hydrolase	gnl|CDD|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	5.34553e-25
NZ_CP009449.1|WP_010950922.1|4058582_4059446_+|HAD-IB-family-hydrolase	gnl|CDD|273654	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled here are all bacterial. The IB subfamily includes the enzyme phosphoserine phosphatase (TIGR00338). Due to this relationship, several of these sequences have been annotated as "phosphoserine phosphatase related proteins," or "Phosphoserine phosphatase-family enzymes." There is presently no evidence that any of the enzymes in this model possess PSPase activity. OMNI|NTL01ML1250 is annotated as a "possible transferase," however this is due to the C-terminal domain found on this sequence which is homologous to a group of glycerol-phosphate acyltransferases (between trusted and noise to TIGR00530). A subset of these sequences including OMNI|CC1962, the Caulobacter crescentus CicA protein cluster together and may represent a separate equivalog. [Unknown function, Enzymes of unknown specificity].	3.31698e-85
NZ_CP009449.1|WP_003419685.1|4057030_4058083_-|hypothetical-protein	gnl|CDD|274798	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see ). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.	9.01305e-92
NZ_CP009449.1|WP_003900733.1|4060967_4062614_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
NZ_CP009449.1|WP_003419710.1|4069762_4070281_+|phage-holin-family-protein	gnl|CDD|377816	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III. Phage_holin_3_6 is a family of small hydrophobic proteins with two or three transmembrane domains of the Hol-X family. Holin proteins are produced by double-stranded DNA bacteriophages that use an endolysin-holin strategy to achieve lysis of their hosts. The endolysins are peptidoglycan-degrading enzymes that are usually accumulated in the cytosol until access to the cell wall substrate is provided by the holin membrane lesion.	8.41555e-32
NZ_CP009449.1|WP_003419724.1|4074092_4074830_-|endonuclease-III	gnl|CDD|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	2.16645e-106
NZ_CP009449.1|WP_003419699.1|4062610_4063411_-|ABC-transporter-permease	gnl|CDD|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	3.07199e-77

Protein sequences

>NZ_CP009449.1|WP_003419708.1|4068718_4069417_-|protease
MQTAHRRFAAAFAAVLLAVVCLPANTAAADDKLPLGGGAGIVVNGDTMCTLTTIGHDKNGDLIGFTSAHCGGPGAQIAAEGAENAGPVGIMVAGNDGLDYAVIKFDPAKVTPVAVFNGFAINGIGPDPSFGQIACKQGRTTGNSCGVTWGPGESPGTLVMQVCGGPGDSGAPVTVDNLLVGMIHGAFSDNLPSCITKYIPLHTPAVVMSINADLADINAKNRPGAGFVPVPA
>NZ_CP009449.1|WP_010950924.1|4066727_4068683_+|acetyl-coenzyme-A-synthetase
MSESTPEVSSSYPPPAHFAEHANARAELYREAEEDRLAFWAKQANRLSWTTPFTEVLDWSEAPFAKWFVGGELNVAYNCVDRHVEAGHGDRVAIHWEGEPVGDRRTLTYSDLLAEVSKAANALTDLGLVAGDRVAIYLPLIPEAVIAMLACARLGIMHSVVFGGFTAAALQARIVDAQAKLLITADGQFRRGKPSPLKAAADEALAAIPDCSVEHVLVVRRTGIEMAWSEGRDLWWHHVVGSASPAHTPEPFDSEHPLFLLYTSGTTGKPKGIMHTSGGYLTQCCYTMRTIFDVKPDSDVFWCTADIGWVTGHTYGVYGPLCNGVTEVLYEGTPDTPDRHRHFQIIEKYGVTIYYTAPTLIRMFMKWGREIPDSHDLSSLRLLGSVGEPINPEAWRWYRDVIGGGRTPLVDTWWQTETGSAMISPLPGIAAAKPGSAMTPLPGISAKIVDDHGDPLPPHTEGAQHVTGYLVLDQPWPSMLRGIWGDPARYWHSYWSKFSDKGYYFAGDGARIDPDGAIWVLGRIDDVMNVSGHRISTAEVESALVAHSGVAEAAVVGVTDETTTQAICAFVVLRANYAPHDRTAEELRTEVARVISPIARPRDVHVVPELPKTRSGKIMRRLLRDVAENRELGDTSTLLDPTVFDAIRAAK
>NZ_CP009449.1|WP_077365101.1|4066192_4066462_+|hypothetical-protein
MLATHRDCASQGKTSPDRALLACGILEEDRWCRRCGEEGSPRDTVTRRLTHWCGLHPGVSVDHSCLSRCCRLDCRRRGPAVPQRDPPRR
>NZ_CP009449.1|WP_010950923.1|4064394_4066020_-|ABC-transporter-substrate-binding-protein
MVRRMRAALAALATGLLVLAPVAGCGGGVLSPDVVLVNGGEPPNPLIPTGTNDSNGGRIIDRLFAGLMSYDAVGKPSLEVAQSIESADNVNYRITVKPGWKFTDGSPVTAHSFVDAWNYGALSTNAQLQQHFFSPIEGFDDVAGAPGDKSRTTMSGLRVVNDLEFTVRLKAPTIDFTLRLGHSSFYPLPDSAFRDMAAFGRNPIGNGPYKLADGPAGPAWEHNVRIDLVPNPDYHGNRKPRNKGLRFEFYANLDTAYADLLSGNLDVLDTIPPSALTVYQRDLGDHATSGPAAINQTLDTPLRLPHFGGEEGRLRRLALSAAINRPQICQQIFAGTRSPARDFTARSLPGFDPNLPGNEVLDYDPQRARRLWAQADAISPWSGRYAIAYNADAGHRDWVDAVANSIKNVLGIDAVAAPQPTFAGFRTQITNRAIDSAFRAGWQGDYPSMIGFLAPLFTAGAGSNDVGYINPEFDAALAAAEAAPTLTESHELVNDAQRILFHDMPVVPLWDYISVVGWSSQVSNVTVTWNGLPDYENIVKA
>NZ_CP009449.1|WP_003419701.1|4063466_4064393_-|ABC-transporter-permease
MGWYVARRVAVMVPVFLGATLLIYGMVFLLPGDPVAALAGDRPLTPAVAAQLRSHYHLDDPFLVQYLRYLGGILHGDLGRAYSGLPVSAVLAHAFPVTIRLALIALAVEAVLGIGFGVIAGLRQGGIFDSAVLVTGLVIIAIPIFVLGFLAQFLFGVQLEIAPVTVGERASVGRLLLPGIVLGAMSFAYVVRLTRSAVAANAHADYVRTATAKGLSRPRVVTVHILRNSLIPVVTFLGADLGALMGGAIVTEGIFNIHGVGGVLYQAVTRQETPTVVSIVTVLVLIYLITNLLVDLLYAALDPRIRYG
>NZ_CP009449.1|WP_003419699.1|4062610_4063411_-|ABC-transporter-permease
MIAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHHRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGPVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAITVLAFMMMGDALRDALDPASRAWRA
>NZ_CP009449.1|WP_003900733.1|4060967_4062614_-|ABC-transporter-ATP-binding-protein
MSVPAAPLLSVEGLEVTFGTDAPAVCGVDLAVRSGQTVAVVGESGSGKSTTAAAILGLLPAGGRITAGRVVFDGRDITGADAKRLRSIRGREIGYVPQDPMTNLNPVWKVGFQVTEALRANTDGRAARRRAVELLAEAGLPDPAKQAGRYPHQLSGGMCQRALIAIGLAGRPRLLIADEPTSALDVTVQRQVLDHLQGLTDELGTALLLITHDLALAAQRAEAVVVVRRGVVVESGAAQSILQSPQHEYTRRLVAAAPSLTARSRRPPESRSRATTQAGDILVVSELTKIYRESRGAPWRRVESRAVDGVSFRLPRASTLAIVGESGSGKSTLARMVLGLLQPTSGTVVFDGTYDVGALARDQVLAFRRRVQPVFQNPYSSLDPMYSVFRAIEEPLRVHHVGDRRQRQRAVRELVDQVALPSSILGRRPRELSGGQRQRVAIARALALRPEVLVCDEAVSALDVLVQAQILDLLADLQADLGLTYLFISHDLAVIRQIADDVLVMRAGRVVEHASTEEVFSRPRHEYTRQLLQAIPGAPSAPRKVGNL
>NZ_CP009449.1|WP_003419692.1|4060200_4060971_-|hypothetical-protein
MTVDPLAPLMELPGVAAASDRVRDALSRVHRHRTNLRGWPVAAAEASLRAARASSVLDGGPARLHDAGAPTSGKPALSDPVFAGALRVGQALEGGAGPVVGVWRRAPLQALARLHMLAAADQVDDDRLGRPRSDADVGPRLELLADVVTHPTLASAPVVAAVAHGELLTLRPFGCADGVVARAVSRLVTIATGLDPHGLGVPEVIWMRQPAEYHDAARRFAGGTPDGVAGWLLLCCGAMLDGAREALSIAESLSPG
>NZ_CP009449.1|WP_010950922.1|4058582_4059446_+|HAD-IB-family-hydrolase
MTVSDSPAQRQTPPQTPGGTAPRARTAAFFDLDKTIIAKPSTLAFSKPFFAQGLLNRRAVLKSSYAQFIFLLSGADHDQMDRMRTHLTNMCAGWDVAQVRSIVNETLHDIVTPLVFAEAADLIAAHKLCGRDVVVVSASGEEIVGPIARALGATHAMATRMIVEDGKYTGEVAFYCYGEGKAQAIRELAASEGYPLEHCYAYSDSITDLPMLEAVGHASVVNPDRGLRKEASVRGWPVLSFSRPVSLRDRIPAPSAAAIATTAAVGISALAAGAVTYALLRRFAFQP
>NZ_CP009449.1|WP_003419685.1|4057030_4058083_-|hypothetical-protein
MLTDPGLRDELDRVAAAVGVRVVHLGGRHLVSRKTWSAAAAVVLDHAAADRCGRLALPRRTHVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
>NZ_CP009449.1|WP_003419710.1|4069762_4070281_+|phage-holin-family-protein
MSKIDRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVRRIRGPRQTIASVKETRTALTPGHDKTPVTPKPVTSDRATPVDPSGW
>NZ_CP009449.1|WP_003419712.1|4070281_4071265_+|alpha/beta-hydrolase
MAAPDPSMTRIAGPWRHLDVHANGIRFHVVEAVPSGQPEGPDAATPPMQPALARPLVILLHGFGSFWWSWRHQLCGLTGARVVAVDLRGYGGSDKPPRGYDGWTLAGDTAGLIRALGHPSATLVGHADGGLACWTTALLHSRLVRAIALISSPHPAALRRSTLTRRDQRHALLPTLLRYQLPIWPERLLTRNNAAEIERLVRARGCAKWLASEDFSQAIDHLRQAIQIPAAAHCALEYQRWAVRSQLRSEGRRFIRAMTQQLGMPLLHLRGDADPYVLADPVERTQRYAPHGRYISIAGAGHFSHEEAPEEVNRHLMRFLEQVHQLS
>NZ_CP009449.1|WP_003419714.1|4071257_4072451_-|acid-resistance-periplasmic-serine-protease-MarP
MTPSQWLDIAVLAVAFIAAISGWRAGALGSMLSFGGVLLGATAGVLLAPHIVSQISAPRAKLFAALFLILALVVVGEVAGVVLGRAVRGAIRNRPIRLIDSVIGVGVQLVVVLTAAWLLAMPLTQSKEQPELAAAVKGSRVLARVNEAAPTWLKTVPKRLSALLNTSGLPAVLEPFSRTPVIPVASPDPALVNNPVVAATEPSVVKIRSLAPRCQKVLEGTGFVISPDRVMTNAHVVAGSNNVTVYAGDKPFEATVVSYDPSVDVAILAVPHLPPPPLVFAAEPAKTGADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPEPVTRDVYTIRADVEQGDSGGPLIDLNGQVLGVVFGAAVDDAETGFVLTAGEVAGQLAKIGATQPVGTGACVS
>NZ_CP009449.1|WP_003419718.1|4072456_4073278_-|CoA-pyrophosphatase
MSAGGTPLQAGATPTGSRGTVALRPDAGPSWLRPLVDNVGQIPDAYRRRLPADVLAMVTAAGAVSAMTSSRRDHREAAVLVLFSGPEAGPGDGGVPDDADLLLTVRASTLRHHAGQAAFPGGVVDPADDGPVATALREANEETGIDPSRLHPLATMERTFIAPSRFHVVPVLAYSPDPGPVAVVNEAETAIVARVPVRAFINPANRLMVYRRPHTRRWAGPAFLLNQMLVWGFTGQVISAVLDVAGWAQPWDTGDIRELDAAMVLIDDESDPR
>NZ_CP009449.1|WP_003419721.1|4073409_4074093_-|TlpA-family-protein-disulfide-reductase
MPSLPTTPAETAMTTLTGKTRWTIAILAVVAALMAALVAQLHDYSASSTISQRPAPREHRDGDTPEALAWSRQRANLPPCPAAGNGPGAAALRGVVVVCAGDGSAVDVARALAGRRVVINLWAHWCAPCMTELPVMAEYQRRVGPAVLVVTVHQGQNEAAALSRLADLGVRLPTLQDDRRRVAAALRVANVMPATVVLRPDGSVAQTLPRAFGSADEIVAAVGNDAG
>NZ_CP009449.1|WP_003419724.1|4074092_4074830_-|endonuclease-III
MPGRWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL
>NZ_CP009449.1|WP_003899635.1|4074937_4075315_+|hypothetical-protein
MFTLLVSWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEALDYLHRRQARRITDSPPLGSGAGPRYAGPLFVTDLDSPVEPPRHGQPNPQFRTARHANHV
>NZ_CP009449.1|WP_003419728.1|4075413_4076088_+|cAMP-receptor-protein
MDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSERLARRAR
>NZ_CP009449.1|WP_003419731.1|4076193_4076988_-|MBL-fold-metallo-hydrolase
MSKTAESLTHPAYGQLRAVTDTASVLLADNPGLLTLDGTNTWVLRGPLSDELVVVDPGPDDDEHLARVAALGRIALVLISHRHGDHTSGIDKLVALTGAPVRAADPQFLRRDGETLTDGEVIDVAGLTITVLATPGHTADSLSFVLDDAVLTADTVLGCGTTVIDKEDGSLADYLESLHRLRGLGRRTVLPGHGPDLLDLEAIASGYLLHRHERLEQIRAALRDLGDDATVREVVEHVYLDVDEKLWNAAEWSVQAQLDYLRTR
>NZ_CP009449.1|WP_003419733.1|4076994_4077450_-|RidA-family-protein
MSAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEEGKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFGDSGAHARSAVGVSELPLDAPVEVELIVEVG

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP009449_6	6.12|3028488|35|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT	3028488-3028522	35	NZ_CP009449.1	3028997-3029031	0	1.0
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP009449.1	3902309-3902334	0	1.0
NZ_CP009449_4	4.9|2021845|20|NZ_CP009449|CRISPRCasFinder	2021845-2021864	20	NZ_CP009449.1	332866-332885	2	0.9
NZ_CP009449_4	4.9|2021845|20|NZ_CP009449|CRISPRCasFinder	2021845-2021864	20	NZ_CP009449.1	821343-821362	2	0.9

1. spacer 6.12|3028488|35|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT matches to position: 3028997-3029031, mismatch: 0, identity: 1.0

tgacagggtgcggtggtcgctgatcggctccccga	CRISPR spacer
tgacagggtgcggtggtcgctgatcggctccccga	Protospacer
***********************************

2. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to position: 3902309-3902334, mismatch: 0, identity: 1.0

tagcagcggtgccggcggcaccaacg	CRISPR spacer
tagcagcggtgccggcggcaccaacg	Protospacer
**************************

3. spacer 4.9|2021845|20|NZ_CP009449|CRISPRCasFinder matches to position: 332866-332885, mismatch: 2, identity: 0.9

cggcgccgtagagcagcccg	CRISPR spacer
cggagccgtggagcagcccg	Protospacer
*** *****.**********

4. spacer 4.9|2021845|20|NZ_CP009449|CRISPRCasFinder matches to position: 821343-821362, mismatch: 2, identity: 0.9

cggcgccgtagagcagcccg	CRISPR spacer
cgtcgccgtacagcagcccg	Protospacer
** ******* *********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009449_4	4.9|2021845|20|NZ_CP009449|CRISPRCasFinder	2021845-2021864	20	NZ_CP021025	Rhizobium sp. TAL182 plasmid pRetTAL182a, complete sequence	7667-7686	1	0.95
NZ_CP009449_3	3.1|922617|23|NZ_CP009449|PILER-CR	922617-922639	23	NZ_CP049042	Pseudohalocynthiibacter aestuariivivens strain RR4-35 plasmid pRR4-35_5, complete sequence	64431-64453	2	0.913
NZ_CP009449_3	3.1|922617|23|NZ_CP009449|PILER-CR	922617-922639	23	NZ_CP045388	Ruegeria sp. THAF33 plasmid pTHAF33_d, complete sequence	32904-32926	2	0.913
NZ_CP009449_3	3.1|922617|23|NZ_CP009449|PILER-CR	922617-922639	23	NZ_CP020932	Marinobacter salarius strain SMR5 plasmid pSMR5, complete sequence	48558-48580	2	0.913
NZ_CP009449_4	4.4|2021569|23|NZ_CP009449|CRISPRCasFinder	2021569-2021591	23	NZ_CP015280	Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence	98598-98620	2	0.913
NZ_CP009449_4	4.4|2021569|23|NZ_CP009449|CRISPRCasFinder	2021569-2021591	23	NZ_CP023153	Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_2, complete sequence	74268-74290	2	0.913
NZ_CP009449_4	4.4|2021569|23|NZ_CP009449|CRISPRCasFinder	2021569-2021591	23	NZ_CP011665	Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence	120516-120538	2	0.913
NZ_CP009449_4	4.4|2021569|23|NZ_CP009449|CRISPRCasFinder	2021569-2021591	23	NZ_CP019224	Mycobacterium chimaera strain CDC 2015-22-71 plasmid pDHQP20152271_1, complete sequence	22106-22128	2	0.913
NZ_CP009449_4	4.4|2021569|23|NZ_CP009449|CRISPRCasFinder	2021569-2021591	23	NZ_LT703507	Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 3	21485-21507	2	0.913
NZ_CP009449_4	4.4|2021569|23|NZ_CP009449|CRISPRCasFinder	2021569-2021591	23	NZ_CP015273	Mycobacterium chimaera strain ZUERICH-1 plasmid unnamed 1, complete sequence	13708-13730	2	0.913
NZ_CP009449_4	4.4|2021569|23|NZ_CP009449|CRISPRCasFinder	2021569-2021591	23	NC_020275	Mycobacterium intracellulare subsp. yongonense 05-1390 plasmid pMyong1, complete sequence	88157-88179	2	0.913
NZ_CP009449_4	4.4|2021569|23|NZ_CP009449|CRISPRCasFinder	2021569-2021591	23	NZ_CP029333	Mycobacterium avium subsp. hominissuis strain MAC109 plasmid pMAC109a, complete sequence	15540-15562	2	0.913
NZ_CP009449_4	4.4|2021569|23|NZ_CP009449|CRISPRCasFinder	2021569-2021591	23	NZ_CP045964	Mycobacterium chimaera strain AUSMDU00007395 plasmid pAUSMDU00007395_01, complete sequence	4951-4973	2	0.913
NZ_CP009449_4	4.4|2021569|23|NZ_CP009449|CRISPRCasFinder	2021569-2021591	23	NC_022654	Mycobacterium kansasii ATCC 12478 plasmid pMK12478, complete sequence	101179-101201	2	0.913
NZ_CP009449_4	4.4|2021569|23|NZ_CP009449|CRISPRCasFinder	2021569-2021591	23	MT521991	Streptomyces phage Eklok, complete genome	29093-29115	2	0.913
NZ_CP009449_4	4.4|2021569|23|NZ_CP009449|CRISPRCasFinder	2021569-2021591	23	DQ372923	Bacteriophage mu1/6, complete genome	32520-32542	2	0.913
NZ_CP009449_4	4.4|2021569|23|NZ_CP009449|CRISPRCasFinder	2021569-2021591	23	NC_007967	Streptomyces phage mu1/6, complete genome	32520-32542	2	0.913
NZ_CP009449_4	4.4|2021569|23|NZ_CP009449|CRISPRCasFinder	2021569-2021591	23	NZ_CP015095	Pelagibaca abyssi strain JLT2014 plasmid pPABY4, complete sequence	92042-92064	3	0.87
NZ_CP009449_4	4.10|2021893|23|NZ_CP009449|CRISPRCasFinder	2021893-2021915	23	NZ_CP016080	Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence	163376-163398	3	0.87
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP013072	Sphingobium indicum B90A plasmid pSRL2, complete sequence	24820-24845	3	0.885
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP022192	Yangia pacifica strain YSBP01 plasmid unnamed2, complete sequence	113352-113377	3	0.885
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP034352	Streptomyces sp. W1SF4 plasmid p2, complete sequence	190481-190506	3	0.885
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	CP000663	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence	74260-74285	3	0.885
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP045122	Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence	137339-137364	3	0.885
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	JX403939	Pseudomonas phage YMC/01/01/P52_PAE_BP, complete genome	28364-28389	4	0.846
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	KU310943	Pseudomonas phage YMC11/07/P54_PAE_BP, complete genome	43663-43688	4	0.846
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NC_042342	Pseudomonas virus H66, complete genome	16480-16505	4	0.846
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP054842	Acidovorax sp. 16-35-5 plasmid unnamed2, complete sequence	107104-107129	4	0.846
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NC_020548	Azoarcus sp. KH32C plasmid pAZKH, complete sequence	633285-633310	4	0.846
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	MN369748	Mycobacterium phage Miko, complete genome	5561-5586	4	0.846
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	MF185727	Mycobacterium phage BobSwaget, complete genome	5581-5606	4	0.846
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	MK801735	Mycobacterium Phage Rachaly, complete genome	5581-5606	4	0.846
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	MF324899	Mycobacterium phage Lokk, complete genome	5583-5608	4	0.846
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	372460-372485	4	0.846
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	704492-704517	4	0.846
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1108585-1108610	4	0.846
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	751777-751802	4	0.846
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	636573-636598	4	0.846
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP020813	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed4, complete sequence	41589-41614	4	0.846
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NC_017536	Oligotropha carboxidovorans OM4 plasmid pHCG3B, complete sequence	41485-41510	4	0.846
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP010057	Hymenobacter sp. DG25B plasmid, complete sequence	101632-101657	4	0.846
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP021405	Celeribacter manganoxidans strain DY25 plasmid pDY25-A, complete sequence	3238-3263	4	0.846
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NC_015689	Oligotropha carboxidovorans OM5 plasmid pHCG3, complete sequence	41487-41512	4	0.846
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	216902-216927	4	0.846
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	MH617654	Caudovirales sp. isolate ctbf53, complete genome	13823-13848	4	0.846
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP015867	Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence	96692-96717	4	0.846
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP020399	Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence	346581-346606	4	0.846
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP024936	Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence	442007-442032	4	0.846
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP010864	Marinovum algicola DG 898 plasmid pMaD9, complete sequence	13482-13507	4	0.846
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NC_023006	Pseudomonas phage PPpW-3 DNA, complete sequence	9662-9687	4	0.846
NZ_CP009449_4	4.5|2021620|29|NZ_CP009449|CRISPRCasFinder	2021620-2021648	29	NZ_CP016765	Citrobacter freundii strain B38 plasmid pOZ182, complete sequence	4306-4334	5	0.828
NZ_CP009449_4	4.5|2021620|29|NZ_CP009449|CRISPRCasFinder	2021620-2021648	29	NZ_CP033380	Escherichia coli strain L73 plasmid pL73-3, complete sequence	11212-11240	5	0.828
NZ_CP009449_4	4.5|2021620|29|NZ_CP009449|CRISPRCasFinder	2021620-2021648	29	NZ_LT883140	Escherichia coli isolate 6666666.257727.embl plasmid II	1493-1521	5	0.828
NZ_CP009449_4	4.5|2021620|29|NZ_CP009449|CRISPRCasFinder	2021620-2021648	29	NZ_LT883140	Escherichia coli isolate 6666666.257727.embl plasmid II	22475-22503	5	0.828
NZ_CP009449_4	4.5|2021620|29|NZ_CP009449|CRISPRCasFinder	2021620-2021648	29	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	42185-42213	5	0.828
NZ_CP009449_4	4.5|2021620|29|NZ_CP009449|CRISPRCasFinder	2021620-2021648	29	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	51227-51255	5	0.828
NZ_CP009449_4	4.6|2021677|29|NZ_CP009449|CRISPRCasFinder	2021677-2021705	29	NZ_CP011518	Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence	254574-254602	5	0.828
NZ_CP009449_4	4.8|2021784|33|NZ_CP009449|CRISPRCasFinder	2021784-2021816	33	NZ_CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	260641-260673	5	0.848
NZ_CP009449_4	4.11|2021944|26|NZ_CP009449|CRISPRCasFinder	2021944-2021969	26	MN284893	Mycobacterium phage LilMcDreamy, complete genome	66487-66512	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NC_006552	Pseudomonas phage F116, complete genome	16030-16055	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	KC900378	Pseudomonas phage LKA5, complete genome	16664-16689	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	AY625898	Pseudomonas aeruginosa phage F116, complete genome	16030-16055	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP020952	Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence	78295-78320	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP041158	Leisingera aquaemixtae strain R2C4 plasmid unnamed4, complete sequence	32938-32963	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	1503807-1503832	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	1345393-1345418	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	48771-48796	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	371894-371919	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	76988-77013	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	1603728-1603753	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NC_017966	Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence	429170-429195	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	496860-496885	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	1417603-1417628	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP022781	Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence	1520711-1520736	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	1494883-1494908	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	1494883-1494908	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	MF975720	Pseudomonas phage VW-6S, complete genome	1891-1916	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	558180-558205	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	570322-570347	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	1168046-1168071	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	573449-573474	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	672628-672653	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NC_010683	Ralstonia pickettii 12J plasmid pRPIC01, complete sequence	23180-23205	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	732712-732737	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	229828-229853	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	949522-949547	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	1661766-1661791	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	814008-814033	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	575903-575928	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP022773	Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence	586172-586197	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	571849-571874	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	488798-488823	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	570932-570957	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	591719-591744	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	574781-574806	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	575908-575933	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052075	Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence	591719-591744	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	634902-634927	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	580525-580550	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052105	Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence	591717-591742	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	569718-569743	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	634902-634927	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	580525-580550	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052115	Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence	591719-591744	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	634902-634927	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	569746-569771	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	634906-634931	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	580525-580550	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	580525-580550	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	580525-580550	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052107	Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence	591719-591744	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052117	Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence	591719-591744	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	569746-569771	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP022793	Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence	586155-586180	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP022785	Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence	586105-586130	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP022787	Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence	622985-623010	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP022756	Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence	577920-577945	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	580512-580537	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052121	Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence	591719-591744	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	569746-569771	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	634902-634927	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	668120-668145	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052073	Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence	591716-591741	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	569746-569771	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	569746-569771	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052109	Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence	591719-591744	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	580527-580552	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052103	Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence	591719-591744	5	0.808
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	NZ_CP052119	Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence	591719-591744	5	0.808
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	550428-550453	5	0.808
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1262646-1262671	5	0.808
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP035420	Leisingera sp. NJS204 plasmid unnamed3, complete sequence	46670-46695	5	0.808
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP032326	Azospirillum brasilense strain MTCC4035 plasmid p5, complete sequence	250928-250953	5	0.808
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1273257-1273282	5	0.808
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP028567	Aeromonas hydrophila subsp. hydrophila strain WCHAH045096 plasmid pMCR5_045096, complete sequence	150821-150846	5	0.808
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP029832	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence	633950-633975	5	0.808
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP024986	Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence	24056-24081	5	0.808
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	242137-242162	5	0.808
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	712898-712923	5	0.808
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP054616	Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence	587109-587134	5	0.808
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1562565-1562590	5	0.808
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	126442-126467	5	0.808
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP042332	Bosea sp. F3-2 plasmid pB32-1, complete sequence	399814-399839	5	0.808
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NC_024970	Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence	216996-217021	5	0.808
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_KJ396772	Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence	216996-217021	5	0.808
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	824197-824222	5	0.808
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1068988-1069013	5	0.808
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP010326	Pantoea sp. PSNIH1 plasmid pPSP-3a9, complete sequence	34771-34796	5	0.808
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	259572-259597	5	0.808
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	MH509442	Mycobacterium phage Aminay, complete genome	41303-41328	5	0.808
NZ_CP009449_2	2.1|691026|31|NZ_CP009449|CRISPRCasFinder	691026-691056	31	GQ141189	Bifidobacterium phage Bbif-1, complete sequence	38062-38092	6	0.806
NZ_CP009449_4	4.5|2021620|29|NZ_CP009449|CRISPRCasFinder	2021620-2021648	29	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	772532-772560	6	0.793
NZ_CP009449_4	4.6|2021677|29|NZ_CP009449|CRISPRCasFinder	2021677-2021705	29	NZ_CP049749	Rhodococcus fascians A21d2 plasmid pA21d2, complete sequence	90078-90106	6	0.793
NZ_CP009449_4	4.6|2021677|29|NZ_CP009449|CRISPRCasFinder	2021677-2021705	29	NZ_CP020568	Kitasatospora aureofaciens strain DM-1 plasmid unnamed1, complete sequence	241508-241536	6	0.793
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	KM389247	UNVERIFIED: Pseudomonas phage JBD90 clone contig00001 genomic sequence	32276-32301	6	0.769
NZ_CP009449_11	11.8|3914636|26|NZ_CP009449|CRT	3914636-3914661	26	LT603684	Pseudomonas phage phiC725A genome assembly	15973-15998	6	0.769
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NZ_CP054616	Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence	554827-554852	6	0.769
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	NC_023591	Mycobacterium phage Adler, complete genome	43849-43874	6	0.769
NZ_CP009449_11	11.14|3915071|26|NZ_CP009449|CRT	3915071-3915096	26	KF981876	UNVERIFIED: Mycobacterium phage ADLER F1725, complete genome	43845-43870	6	0.769
NZ_CP009449_2	2.1|691026|31|NZ_CP009449|CRISPRCasFinder	691026-691056	31	MK977708	Mycobacterium phage Fulbright, complete genome	10281-10311	7	0.774
NZ_CP009449_2	2.1|691026|31|NZ_CP009449|CRISPRCasFinder	691026-691056	31	MG099948	Mycobacterium phage Philonius, complete genome	10281-10311	7	0.774
NZ_CP009449_2	2.1|691026|31|NZ_CP009449|CRISPRCasFinder	691026-691056	31	MH926055	Mycobacterium phage Chewbacca, complete genome	10281-10311	7	0.774
NZ_CP009449_2	2.1|691026|31|NZ_CP009449|CRISPRCasFinder	691026-691056	31	MT723932	Mycobacterium phage Schnauzer, complete genome	10281-10311	7	0.774
NZ_CP009449_2	2.1|691026|31|NZ_CP009449|CRISPRCasFinder	691026-691056	31	KU935726	Mycobacterium phage Xerxes, complete genome	10281-10311	7	0.774
NZ_CP009449_2	2.1|691026|31|NZ_CP009449|CRISPRCasFinder	691026-691056	31	KU935730	Mycobacterium phage Pipsqueaks, complete genome	10281-10311	7	0.774
NZ_CP009449_2	2.1|691026|31|NZ_CP009449|CRISPRCasFinder	691026-691056	31	MH316570	Mycobacterium phage Silvafighter, complete genome	10281-10311	7	0.774
NZ_CP009449_2	2.1|691026|31|NZ_CP009449|CRISPRCasFinder	691026-691056	31	MK524518	Mycobacterium phage Smurph, complete genome	10281-10311	7	0.774
NZ_CP009449_2	2.1|691026|31|NZ_CP009449|CRISPRCasFinder	691026-691056	31	MK524515	Mycobacterium phage Parmesanjohn, complete genome	10281-10311	7	0.774
NZ_CP009449_2	2.1|691026|31|NZ_CP009449|CRISPRCasFinder	691026-691056	31	MH697585	Mycobacterium phage Gex, complete genome	10280-10310	7	0.774
NZ_CP009449_2	2.1|691026|31|NZ_CP009449|CRISPRCasFinder	691026-691056	31	KM588359	Mycobacterium phage Carcharodon, complete genome	10281-10311	7	0.774
NZ_CP009449_2	2.1|691026|31|NZ_CP009449|CRISPRCasFinder	691026-691056	31	MH697576	Mycobacterium phage Aggie, complete genome	10282-10312	7	0.774
NZ_CP009449_2	2.1|691026|31|NZ_CP009449|CRISPRCasFinder	691026-691056	31	MH697593	Mycobacterium phage Tapioca, complete genome	10281-10311	7	0.774
NZ_CP009449_2	2.1|691026|31|NZ_CP009449|CRISPRCasFinder	691026-691056	31	MG099936	Mycobacterium phage Andies, complete genome	10281-10311	7	0.774
NZ_CP009449_2	2.1|691026|31|NZ_CP009449|CRISPRCasFinder	691026-691056	31	NC_031243	Mycobacterium phage Xeno, complete genome	10281-10311	7	0.774
NZ_CP009449_2	2.1|691026|31|NZ_CP009449|CRISPRCasFinder	691026-691056	31	JN256079	Mycobacterium phage Charlie, complete genome	10281-10311	7	0.774
NZ_CP009449_4	4.3|2021509|32|NZ_CP009449|CRISPRCasFinder	2021509-2021540	32	NZ_LT960615	Hartmannibacter diazotrophicus strain E19T plasmid HDIAp1, complete sequence	999-1030	7	0.781
NZ_CP009449_4	4.3|2021509|32|NZ_CP009449|CRISPRCasFinder	2021509-2021540	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	284270-284301	7	0.781
NZ_CP009449_4	4.5|2021620|29|NZ_CP009449|CRISPRCasFinder	2021620-2021648	29	NZ_CP022999	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence	1487216-1487244	7	0.759
NZ_CP009449_4	4.8|2021784|33|NZ_CP009449|CRISPRCasFinder	2021784-2021816	33	NZ_CP027794	Rhodococcus hoagii strain DSSKP-R-001 plasmid plas1, complete sequence	43457-43489	7	0.788
NZ_CP009449_4	4.8|2021784|33|NZ_CP009449|CRISPRCasFinder	2021784-2021816	33	NZ_CP022542	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-2, complete sequence	133402-133434	7	0.788
NZ_CP009449_4	4.8|2021784|33|NZ_CP009449|CRISPRCasFinder	2021784-2021816	33	NZ_CP015737	Shinella sp. HZN7 plasmid pShin-01, complete sequence	325903-325935	7	0.788
NZ_CP009449_11	11.15|3915125|35|NZ_CP009449|CRT	3915125-3915159	35	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	794860-794894	7	0.8
NZ_CP009449_4	4.5|2021620|29|NZ_CP009449|CRISPRCasFinder	2021620-2021648	29	NC_014841	Pantoea sp. At-9b plasmid pPAT9B04, complete sequence	235558-235586	8	0.724
NZ_CP009449_4	4.6|2021677|29|NZ_CP009449|CRISPRCasFinder	2021677-2021705	29	NZ_CP042824	Rhizobium sp. WL3 plasmid unnamed1, complete sequence	34990-35018	8	0.724
NZ_CP009449_4	4.13|2021961|33|NZ_CP009449|PILER-CR	2021961-2021993	33	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	58706-58738	8	0.758
NZ_CP009449_4	4.13|2021961|33|NZ_CP009449|PILER-CR	2021961-2021993	33	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	506295-506327	8	0.758
NZ_CP009449_4	4.13|2021961|33|NZ_CP009449|PILER-CR	2021961-2021993	33	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	34702-34734	8	0.758
NZ_CP009449_7	7.13|3031020|29|NZ_CP009449|PILER-CR	3031020-3031048	29	MK599315	Pseudomonas phage PA1C, complete genome	299172-299200	8	0.724
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NZ_CP015451	Dietzia lutea strain YIM 80766 plasmid unnamed2, complete sequence	24014-24048	8	0.771
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	28252-28286	8	0.771
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	81312-81346	8	0.771
NZ_CP009449_11	11.15|3915125|35|NZ_CP009449|CRT	3915125-3915159	35	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	529157-529191	8	0.771
NZ_CP009449_2	2.1|691026|31|NZ_CP009449|CRISPRCasFinder	691026-691056	31	NZ_CP014964	Geobacter anodireducens strain SD-1 plasmid pSD, complete sequence	13698-13728	9	0.71
NZ_CP009449_2	2.1|691026|31|NZ_CP009449|CRISPRCasFinder	691026-691056	31	NC_015974	Sphingobium sp. SYK-6 plasmid pSLPG, complete sequence	20960-20990	9	0.71
NZ_CP009449_2	2.1|691026|31|NZ_CP009449|CRISPRCasFinder	691026-691056	31	NZ_CP005085	Sphingobium sp. TKS plasmid pTK1, complete sequence	15390-15420	9	0.71
NZ_CP009449_4	4.8|2021784|33|NZ_CP009449|CRISPRCasFinder	2021784-2021816	33	JN968479	Haloarcula hispanica icosahedral virus 2, complete genome	27240-27272	9	0.727
NZ_CP009449_6	6.10|3028341|37|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT	3028341-3028377	37	NZ_CP019037	Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence	74714-74750	9	0.757
NZ_CP009449_8	8.3|3031609|39|NZ_CP009449|CRISPRCasFinder,CRT	3031609-3031647	39	NZ_CP014277	Martelella sp. AD-3 plasmid unnamed2, complete sequence	91271-91309	9	0.769
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NC_019957	Mycobacterium sp. JS623 plasmid pMYCSM01, complete sequence	283347-283381	9	0.743
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NC_008712	Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence	321401-321435	9	0.743
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	MH513977	Mycobacterium phage Mynx, complete genome	51786-51820	9	0.743
NZ_CP009449_4	4.3|2021509|32|NZ_CP009449|CRISPRCasFinder	2021509-2021540	32	NZ_CP018232	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed4, complete sequence	205985-206016	10	0.688
NZ_CP009449_4	4.3|2021509|32|NZ_CP009449|CRISPRCasFinder	2021509-2021540	32	CP053412	Salmonella enterica strain 72-4606 plasmid unnamed, complete sequence	1256-1287	10	0.688
NZ_CP009449_4	4.3|2021509|32|NZ_CP009449|CRISPRCasFinder	2021509-2021540	32	NZ_CP035515	Haematobacter massiliensis strain OT1 plasmid pOT1-5, complete sequence	121510-121541	10	0.688
NZ_CP009449_6	6.1|3027674|35|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT	3027674-3027708	35	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	414652-414686	10	0.714
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NZ_CP015451	Dietzia lutea strain YIM 80766 plasmid unnamed2, complete sequence	4945-4979	10	0.714
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NZ_CP015451	Dietzia lutea strain YIM 80766 plasmid unnamed2, complete sequence	11279-11313	10	0.714
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NZ_CP015451	Dietzia lutea strain YIM 80766 plasmid unnamed2, complete sequence	17620-17654	10	0.714
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NZ_CP015451	Dietzia lutea strain YIM 80766 plasmid unnamed2, complete sequence	30349-30383	10	0.714
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NZ_CP015451	Dietzia lutea strain YIM 80766 plasmid unnamed2, complete sequence	36659-36693	10	0.714
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NZ_CP015452	Dietzia lutea strain YIM 80766 plasmid unnamed3, complete sequence	5728-5762	10	0.714
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NZ_CP015452	Dietzia lutea strain YIM 80766 plasmid unnamed3, complete sequence	12046-12080	10	0.714
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NZ_CP015452	Dietzia lutea strain YIM 80766 plasmid unnamed3, complete sequence	18366-18400	10	0.714
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NZ_CP015452	Dietzia lutea strain YIM 80766 plasmid unnamed3, complete sequence	24700-24734	10	0.714
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NZ_CP015452	Dietzia lutea strain YIM 80766 plasmid unnamed3, complete sequence	31040-31074	10	0.714
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NZ_CP030864	Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence	265023-265057	10	0.714
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	AP021850	Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome	300257-300291	10	0.714
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NZ_CP032344	Azospirillum brasilense strain MTCC4038 plasmid p5, complete sequence	48735-48769	10	0.714
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NZ_CP033323	Azospirillum brasilense strain Cd plasmid p5, complete sequence	210558-210592	10	0.714
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NZ_CP021082	Deinococcus ficus strain CC-FR2-10 plasmid pDFI1, complete sequence	624915-624949	10	0.714
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	CP040467	Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence	197554-197588	10	0.714
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NZ_CP033317	Azospirillum brasilense strain Sp 7 plasmid p5, complete sequence	120996-121030	10	0.714
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NZ_CP012919	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p5, complete sequence	134704-134738	10	0.714
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	MN694617	Marine virus AFVG_250M855, complete genome	1090-1124	10	0.714
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	247737-247771	11	0.686
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NZ_LR134460	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 18, complete sequence	310910-310944	11	0.686
NZ_CP009449_11	11.11|3914846|35|NZ_CP009449|CRT	3914846-3914880	35	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	436248-436282	12	0.657

1. spacer 4.9|2021845|20|NZ_CP009449|CRISPRCasFinder matches to NZ_CP021025 (Rhizobium sp. TAL182 plasmid pRetTAL182a, complete sequence) position: , mismatch: 1, identity: 0.95

cggcgccgtagagcagcccg	CRISPR spacer
cggcgccgtagagcagccct	Protospacer
******************* 

2. spacer 3.1|922617|23|NZ_CP009449|PILER-CR matches to NZ_CP049042 (Pseudohalocynthiibacter aestuariivivens strain RR4-35 plasmid pRR4-35_5, complete sequence) position: , mismatch: 2, identity: 0.913

ccccggtggcggcaccaccagcc	CRISPR spacer
ccccggtggcgtcaccaccagca	Protospacer
*********** ********** 

3. spacer 3.1|922617|23|NZ_CP009449|PILER-CR matches to NZ_CP045388 (Ruegeria sp. THAF33 plasmid pTHAF33_d, complete sequence) position: , mismatch: 2, identity: 0.913

ccccggtggcggcaccaccagcc	CRISPR spacer
ccccggtggcgtcaccaccagca	Protospacer
*********** ********** 

4. spacer 3.1|922617|23|NZ_CP009449|PILER-CR matches to NZ_CP020932 (Marinobacter salarius strain SMR5 plasmid pSMR5, complete sequence) position: , mismatch: 2, identity: 0.913

ccccggtggcggcaccaccagcc	CRISPR spacer
ccacggtggcggcaccgccagcc	Protospacer
** *************.******

5. spacer 4.4|2021569|23|NZ_CP009449|CRISPRCasFinder matches to NZ_CP015280 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence) position: , mismatch: 2, identity: 0.913

cgaccccaccggcgcccccggca	CRISPR spacer
cgcccccaccggcgcccccgcca	Protospacer
** ***************** **

6. spacer 4.4|2021569|23|NZ_CP009449|CRISPRCasFinder matches to NZ_CP023153 (Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_2, complete sequence) position: , mismatch: 2, identity: 0.913

cgaccccaccggcgcccccggca	CRISPR spacer
cgcccccaccggcgcccccgcca	Protospacer
** ***************** **

7. spacer 4.4|2021569|23|NZ_CP009449|CRISPRCasFinder matches to NZ_CP011665 (Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence) position: , mismatch: 2, identity: 0.913

cgaccccaccggcgcccccggca	CRISPR spacer
cgagcccaccggcgcccccgaca	Protospacer
*** ****************.**

8. spacer 4.4|2021569|23|NZ_CP009449|CRISPRCasFinder matches to NZ_CP019224 (Mycobacterium chimaera strain CDC 2015-22-71 plasmid pDHQP20152271_1, complete sequence) position: , mismatch: 2, identity: 0.913

cgaccccaccggcgcccccggca	CRISPR spacer
cgcccccaccggcgcccccgcca	Protospacer
** ***************** **

9. spacer 4.4|2021569|23|NZ_CP009449|CRISPRCasFinder matches to NZ_LT703507 (Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 3) position: , mismatch: 2, identity: 0.913

cgaccccaccggcgcccccggca	CRISPR spacer
cgcccccaccggcgcccccgcca	Protospacer
** ***************** **

10. spacer 4.4|2021569|23|NZ_CP009449|CRISPRCasFinder matches to NZ_CP015273 (Mycobacterium chimaera strain ZUERICH-1 plasmid unnamed 1, complete sequence) position: , mismatch: 2, identity: 0.913

cgaccccaccggcgcccccggca	CRISPR spacer
cgcccccaccggcgcccccgcca	Protospacer
** ***************** **

11. spacer 4.4|2021569|23|NZ_CP009449|CRISPRCasFinder matches to NC_020275 (Mycobacterium intracellulare subsp. yongonense 05-1390 plasmid pMyong1, complete sequence) position: , mismatch: 2, identity: 0.913

cgaccccaccggcgcccccggca	CRISPR spacer
cgcccccaccggcgcccccgcca	Protospacer
** ***************** **

12. spacer 4.4|2021569|23|NZ_CP009449|CRISPRCasFinder matches to NZ_CP029333 (Mycobacterium avium subsp. hominissuis strain MAC109 plasmid pMAC109a, complete sequence) position: , mismatch: 2, identity: 0.913

cgaccccaccggcgcccccggca	CRISPR spacer
cgcccccaccggcgcccccgcca	Protospacer
** ***************** **

13. spacer 4.4|2021569|23|NZ_CP009449|CRISPRCasFinder matches to NZ_CP045964 (Mycobacterium chimaera strain AUSMDU00007395 plasmid pAUSMDU00007395_01, complete sequence) position: , mismatch: 2, identity: 0.913

cgaccccaccggcgcccccggca	CRISPR spacer
cgcccccaccggcgcccccgcca	Protospacer
** ***************** **

14. spacer 4.4|2021569|23|NZ_CP009449|CRISPRCasFinder matches to NC_022654 (Mycobacterium kansasii ATCC 12478 plasmid pMK12478, complete sequence) position: , mismatch: 2, identity: 0.913

cgaccccaccggcgcccccggca	CRISPR spacer
cgcccccaccggcgcccccgcca	Protospacer
** ***************** **

15. spacer 4.4|2021569|23|NZ_CP009449|CRISPRCasFinder matches to MT521991 (Streptomyces phage Eklok, complete genome) position: , mismatch: 2, identity: 0.913

cgaccccaccggcgcccccggca	CRISPR spacer
cgaccccacccgcgcccccgcca	Protospacer
********** ********* **

16. spacer 4.4|2021569|23|NZ_CP009449|CRISPRCasFinder matches to DQ372923 (Bacteriophage mu1/6, complete genome) position: , mismatch: 2, identity: 0.913

cgaccccaccggcgcccccggca	CRISPR spacer
cgaccgcaccggcgcccacggca	Protospacer
***** *********** *****

17. spacer 4.4|2021569|23|NZ_CP009449|CRISPRCasFinder matches to NC_007967 (Streptomyces phage mu1/6, complete genome) position: , mismatch: 2, identity: 0.913

cgaccccaccggcgcccccggca	CRISPR spacer
cgaccgcaccggcgcccacggca	Protospacer
***** *********** *****

18. spacer 4.4|2021569|23|NZ_CP009449|CRISPRCasFinder matches to NZ_CP015095 (Pelagibaca abyssi strain JLT2014 plasmid pPABY4, complete sequence) position: , mismatch: 3, identity: 0.87

cgaccccaccggcgcccccggca	CRISPR spacer
cattcccaccggcgcccccggca	Protospacer
*. .*******************

19. spacer 4.10|2021893|23|NZ_CP009449|CRISPRCasFinder matches to NZ_CP016080 (Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence) position: , mismatch: 3, identity: 0.87

cggtgccggacgctacgttcccc	CRISPR spacer
cggtgccggccgctacgttccga	Protospacer
********* ***********  

20. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP013072 (Sphingobium indicum B90A plasmid pSRL2, complete sequence) position: , mismatch: 3, identity: 0.885

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
ttcgcccaccggcaccggcaccggcg	Protospacer
. ************ ***********

21. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP022192 (Yangia pacifica strain YSBP01 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.885

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
cgcgcccaccgggagccgcaccggca	Protospacer
************ *** ********.

22. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP034352 (Streptomyces sp. W1SF4 plasmid p2, complete sequence) position: , mismatch: 3, identity: 0.885

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
ctcgcccgccggcagccgcaccggcg	Protospacer
* *****.******** *********

23. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to CP000663 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence) position: , mismatch: 3, identity: 0.885

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
ctcgcccaccgtccgcggcaccggcg	Protospacer
* ********* * ************

24. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP045122 (Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.885

cgcgcccaccggcagcggc--accggcg	CRISPR spacer
cgcgcccaccggcagcggcctgccgg--	Protospacer
*******************  .****  

25. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to JX403939 (Pseudomonas phage YMC/01/01/P52_PAE_BP, complete genome) position: , mismatch: 4, identity: 0.846

tagcagcggtgccggcggcaccaacg	CRISPR spacer
cggcagcggtgccggcggcaccaatt	Protospacer
..**********************. 

26. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to KU310943 (Pseudomonas phage YMC11/07/P54_PAE_BP, complete genome) position: , mismatch: 4, identity: 0.846

tagcagcggtgccggcggcaccaacg	CRISPR spacer
cggcagcggtgccggcggcaccaatt	Protospacer
..**********************. 

27. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NC_042342 (Pseudomonas virus H66, complete genome) position: , mismatch: 4, identity: 0.846

tagcagcggtgccggcggcaccaacg	CRISPR spacer
cggcagcggtgccggcggcaccagct	Protospacer
..*********************.* 

28. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP054842 (Acidovorax sp. 16-35-5 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.846

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ccgcatcggtgccggcggcaccatcg	Protospacer
. *** ***************** **

29. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NC_020548 (Azoarcus sp. KH32C plasmid pAZKH, complete sequence) position: , mismatch: 4, identity: 0.846

tagcagcggtgccggcggcaccaacg	CRISPR spacer
tggcagcggtgccggcggcaccctct	Protospacer
*.********************  * 

30. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to MN369748 (Mycobacterium phage Miko, complete genome) position: , mismatch: 4, identity: 0.846

tagcagcggtgccggcggcaccaacg	CRISPR spacer
cggcggcggtgccggcggcaacaacg	Protospacer
..**.*************** *****

31. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to MF185727 (Mycobacterium phage BobSwaget, complete genome) position: , mismatch: 4, identity: 0.846

tagcagcggtgccggcggcaccaacg	CRISPR spacer
cggcggcggtgccggcggcaacaacg	Protospacer
..**.*************** *****

32. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to MK801735 (Mycobacterium Phage Rachaly, complete genome) position: , mismatch: 4, identity: 0.846

tagcagcggtgccggcggcaccaacg	CRISPR spacer
cggcggcggtgccggcggcaacaacg	Protospacer
..**.*************** *****

33. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to MF324899 (Mycobacterium phage Lokk, complete genome) position: , mismatch: 4, identity: 0.846

tagcagcggtgccggcggcaccaacg	CRISPR spacer
cggcggcggtgccggcggcaacaacg	Protospacer
..**.*************** *****

34. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.846

tagcagcggtgccggcggcaccaacg	CRISPR spacer
gatcatcggtgccggcggcaccatcg	Protospacer
 * ** ***************** **

35. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 4, identity: 0.846

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
gtcctccaccggcagcggcaccggcg	Protospacer
  * .*********************

36. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 4, identity: 0.846

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
gtcctccaccggcagcggcaccggcg	Protospacer
  * .*********************

37. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 4, identity: 0.846

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
ggataccaccggcagcggcaccggcg	Protospacer
 *   *********************

38. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 4, identity: 0.846

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
cgcgcccaacggcagccgcaccggga	Protospacer
******** ******* ******* .

39. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP020813 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.846

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
cggtgtcaccggcagcggcaccggcg	Protospacer
**   .********************

40. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NC_017536 (Oligotropha carboxidovorans OM4 plasmid pHCG3B, complete sequence) position: , mismatch: 4, identity: 0.846

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
ggctgccaccggcagcgtcaccggcg	Protospacer
 **  ************ ********

41. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP010057 (Hymenobacter sp. DG25B plasmid, complete sequence) position: , mismatch: 4, identity: 0.846

cgcgc-ccaccggcagcggcaccggcg	CRISPR spacer
-atgcaccaccgccagcggcaccggcg	Protospacer
 ..** ****** **************

42. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP021405 (Celeribacter manganoxidans strain DY25 plasmid pDY25-A, complete sequence) position: , mismatch: 4, identity: 0.846

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
cgcccccaccggcagcggcacaaccg	Protospacer
*** ***************** . **

43. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NC_015689 (Oligotropha carboxidovorans OM5 plasmid pHCG3, complete sequence) position: , mismatch: 4, identity: 0.846

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
ggctgccaccggcagcgtcaccggcg	Protospacer
 **  ************ ********

44. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 4, identity: 0.846

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
cgcccacaccggcagcggcaccgcca	Protospacer
*** * ***************** *.

45. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to MH617654 (Caudovirales sp. isolate ctbf53, complete genome) position: , mismatch: 4, identity: 0.846

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
cgcgcccaccgccagcgccaccgcct	Protospacer
*********** ***** ***** * 

46. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP015867 (Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence) position: , mismatch: 4, identity: 0.846

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
ctccgccaccggcaacggcaccggcg	Protospacer
* *  *********.***********

47. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.846

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
cgcgcgcaccggcagcggcacgttcg	Protospacer
***** ***************   **

48. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP024936 (Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence) position: , mismatch: 4, identity: 0.846

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
caagcacaccggcagcggcaccgccg	Protospacer
*. ** ***************** **

49. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP010864 (Marinovum algicola DG 898 plasmid pMaD9, complete sequence) position: , mismatch: 4, identity: 0.846

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
ccgggccaccagcagcggcaccggcg	Protospacer
*  * *****.***************

50. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NC_023006 (Pseudomonas phage PPpW-3 DNA, complete sequence) position: , mismatch: 4, identity: 0.846

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
cgtcaccaccggcagcggcaccagcg	Protospacer
**.  *****************.***

51. spacer 4.5|2021620|29|NZ_CP009449|CRISPRCasFinder matches to NZ_CP016765 (Citrobacter freundii strain B38 plasmid pOZ182, complete sequence) position: , mismatch: 5, identity: 0.828

cggcgccgccggcaccaaacagcaggccc	CRISPR spacer
gaacgccgccagcaccaaacagcagaccc	Protospacer
 ..*******.**************.***

52. spacer 4.5|2021620|29|NZ_CP009449|CRISPRCasFinder matches to NZ_CP033380 (Escherichia coli strain L73 plasmid pL73-3, complete sequence) position: , mismatch: 5, identity: 0.828

cggcgccgccggcaccaaacagcaggccc	CRISPR spacer
gaacgccgccagcaccaaacagcagcccc	Protospacer
 ..*******.************** ***

53. spacer 4.5|2021620|29|NZ_CP009449|CRISPRCasFinder matches to NZ_LT883140 (Escherichia coli isolate 6666666.257727.embl plasmid II) position: , mismatch: 5, identity: 0.828

cggcgccgccggcaccaaacagcaggccc	CRISPR spacer
gaacgccgccagcaccaaacagcagcccc	Protospacer
 ..*******.************** ***

54. spacer 4.5|2021620|29|NZ_CP009449|CRISPRCasFinder matches to NZ_LT883140 (Escherichia coli isolate 6666666.257727.embl plasmid II) position: , mismatch: 5, identity: 0.828

cggcgccgccggcaccaaacagcaggccc	CRISPR spacer
gaacgccgccagcaccaaacagcagcccc	Protospacer
 ..*******.************** ***

55. spacer 4.5|2021620|29|NZ_CP009449|CRISPRCasFinder matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 5, identity: 0.828

cggcgccgccggcaccaaacagcaggccc	CRISPR spacer
cgacagcgccggcaccagccagcaggccc	Protospacer
**.*. ***********. **********

56. spacer 4.5|2021620|29|NZ_CP009449|CRISPRCasFinder matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 5, identity: 0.828

cggcgccgccggcaccaaacagcaggccc	CRISPR spacer
cgacagcgccggcaccagccagcaggccc	Protospacer
**.*. ***********. **********

57. spacer 4.6|2021677|29|NZ_CP009449|CRISPRCasFinder matches to NZ_CP011518 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence) position: , mismatch: 5, identity: 0.828

ccaccccggtagcgccaccgccgagtgcg	CRISPR spacer
cggcgccggtcgcggcaccgccgagtgcg	Protospacer
* .* ***** *** **************

58. spacer 4.8|2021784|33|NZ_CP009449|CRISPRCasFinder matches to NZ_CP025547 (Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.848

agaacaacccgccgtctccgccggccaccaccg-	CRISPR spacer
cgaacaacccgccgactccgcccgcc-ccgccgg	Protospacer
 ************* ******* *** **.*** 

59. spacer 4.11|2021944|26|NZ_CP009449|CRISPRCasFinder matches to MN284893 (Mycobacterium phage LilMcDreamy, complete genome) position: , mismatch: 5, identity: 0.808

acaggccagcggctccgccgttgccc	CRISPR spacer
cgacgccagcgactccgccgttgcca	Protospacer
  * *******.************* 

60. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NC_006552 (Pseudomonas phage F116, complete genome) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
gggcagcggtgccggcggcaccagtt	Protospacer
 .*********************.. 

61. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to KC900378 (Pseudomonas phage LKA5, complete genome) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
gggcagcggtgccggcggcaccagtt	Protospacer
 .*********************.. 

62. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to AY625898 (Pseudomonas aeruginosa phage F116, complete genome) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
gggcagcggtgccggcggcaccagtt	Protospacer
 .*********************.. 

63. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP020952 (Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
cctcagcggtgccggcagcaccaaca	Protospacer
.  *************.********.

64. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP041158 (Leisingera aquaemixtae strain R2C4 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
aggcagcggtcccggcggcaccatca	Protospacer
 .******** ************ *.

65. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

66. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

67. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
cagcagcggcgccggcggcaccgggg	Protospacer
.********.************.. *

68. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

69. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

70. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

71. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NC_017966 (Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
gatcagcggtgccggcggcaccttct	Protospacer
 * *******************  * 

72. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

73. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

74. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP022781 (Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

75. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

76. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

77. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to MF975720 (Pseudomonas phage VW-6S, complete genome) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ccgccgcggcgccggcggcaccaact	Protospacer
. ** ****.*************** 

78. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

79. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

80. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

81. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

82. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

83. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NC_010683 (Ralstonia pickettii 12J plasmid pRPIC01, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
gtacagcggcgccggcggcaccaagg	Protospacer
  .******.************** *

84. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

85. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

86. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

87. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

88. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

89. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

90. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP022773 (Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

91. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

92. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

93. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

94. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

95. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

96. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

97. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052075 (Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

98. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

99. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

100. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052105 (Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

101. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

102. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

103. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

104. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052115 (Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

105. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

106. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

107. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

108. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

109. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

110. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

111. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052107 (Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

112. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052117 (Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

113. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

114. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP022793 (Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

115. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP022785 (Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

116. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP022787 (Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

117. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP022756 (Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

118. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

119. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052121 (Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

120. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

121. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

122. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

123. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052073 (Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

124. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

125. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

126. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052109 (Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

127. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

128. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052103 (Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

129. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to NZ_CP052119 (Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.808

tagcagcggtgccggcggcaccaacg	CRISPR spacer
ggtcagcgatgccggcggcatcaacg	Protospacer
 . *****.***********.*****

130. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 5, identity: 0.808

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
ggcgtccaccggcaccggcaccggac	Protospacer
 ***.********* *********  

131. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 5, identity: 0.808

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
ggcgtccaccggcaccggcaccggac	Protospacer
 ***.********* *********  

132. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP035420 (Leisingera sp. NJS204 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.808

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
atagcggaccggcagcggcaccggcg	Protospacer
   **  *******************

133. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP032326 (Azospirillum brasilense strain MTCC4035 plasmid p5, complete sequence) position: , mismatch: 5, identity: 0.808

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
atggccgaccggcagcagcaccggcg	Protospacer
   *** *********.*********

134. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 5, identity: 0.808

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
ctcgccctccggcagcggcaccgcgc	Protospacer
* ***** ***************   

135. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP028567 (Aeromonas hydrophila subsp. hydrophila strain WCHAH045096 plasmid pMCR5_045096, complete sequence) position: , mismatch: 5, identity: 0.808

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
atcgtccaccggcaccggcaccggca	Protospacer
  **.********* **********.

136. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.808

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
ctatcccaccggcggcggcaccggcc	Protospacer
*   *********.*********** 

137. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP024986 (Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence) position: , mismatch: 5, identity: 0.808

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
aacccccaccggcaccggcaccggca	Protospacer
 .* ********** **********.

138. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 5, identity: 0.808

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
gtcgcccaccggcaccgccaccggcc	Protospacer
  ************ ** ******* 

139. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 5, identity: 0.808

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
cgcgcccaccgacaccggcaccgcat	Protospacer
***********.** ********   

140. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP054616 (Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.808

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
aggatccaccggcggcggcaccggcg	Protospacer
 * ..********.************

141. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.808

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
ctcgccctccggcagcggcaccgcgc	Protospacer
* ***** ***************   

142. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 5, identity: 0.808

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
ctcgccctccggcagcggcaccgcgc	Protospacer
* ***** ***************   

143. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP042332 (Bosea sp. F3-2 plasmid pB32-1, complete sequence) position: , mismatch: 5, identity: 0.808

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
gatgcccagcggcagcggcacgggcg	Protospacer
 ..***** ************ ****

144. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NC_024970 (Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 5, identity: 0.808

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
aacccccaccggcaccggcaccggca	Protospacer
 .* ********** **********.

145. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_KJ396772 (Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 5, identity: 0.808

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
aacccccaccggcaccggcaccggca	Protospacer
 .* ********** **********.

146. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.808

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
ggcgcccaccggcagccggaccgggc	Protospacer
 *************** * *****  

147. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.808

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
ctcgccctccggcagcggcaccgcgc	Protospacer
* ***** ***************   

148. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP010326 (Pantoea sp. PSNIH1 plasmid pPSP-3a9, complete sequence) position: , mismatch: 5, identity: 0.808

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
ggcgcgcaccggcagcggcacctgga	Protospacer
 **** **************** * .

149. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.808

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
ctcgccctccggcagcggcaccgcgc	Protospacer
* ***** ***************   

150. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to MH509442 (Mycobacterium phage Aminay, complete genome) position: , mismatch: 5, identity: 0.808

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
tgacgccaccggcagccgcaccggcg	Protospacer
.*   *********** *********

151. spacer 2.1|691026|31|NZ_CP009449|CRISPRCasFinder matches to GQ141189 (Bifidobacterium phage Bbif-1, complete sequence) position: , mismatch: 6, identity: 0.806

agcgcgaacggcaagccgaac----cgttggaccc	CRISPR spacer
agcgcgaacggccagccgaaccatgcgctgg----	Protospacer
************ ********    **.***    

152. spacer 4.5|2021620|29|NZ_CP009449|CRISPRCasFinder matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 6, identity: 0.793

cggcgccgccggcaccaaacagcaggccc	CRISPR spacer
ccacaccgctggcaccaagcagcaggccg	Protospacer
* .*.****.********.********* 

153. spacer 4.6|2021677|29|NZ_CP009449|CRISPRCasFinder matches to NZ_CP049749 (Rhodococcus fascians A21d2 plasmid pA21d2, complete sequence) position: , mismatch: 6, identity: 0.793

ccaccccggtagcgccaccgccgagtgcg	CRISPR spacer
ccaccccggtcgcgccgccgccggccccg	Protospacer
********** *****.******. . **

154. spacer 4.6|2021677|29|NZ_CP009449|CRISPRCasFinder matches to NZ_CP020568 (Kitasatospora aureofaciens strain DM-1 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

ccaccccggtagcgccaccgccgagtgcg-	CRISPR spacer
gaaccccggtggcgccaccgccg-ccgcgg	Protospacer
  ********.************  .*** 

155. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to KM389247 (UNVERIFIED: Pseudomonas phage JBD90 clone contig00001 genomic sequence) position: , mismatch: 6, identity: 0.769

tagcagcggtgccggcggcaccaacg	CRISPR spacer
cggcagaggtgccggcggcaccagtt	Protospacer
..**** ****************.. 

156. spacer 11.8|3914636|26|NZ_CP009449|CRT matches to LT603684 (Pseudomonas phage phiC725A genome assembly) position: , mismatch: 6, identity: 0.769

tagcagcggtgccggcggcaccaacg	CRISPR spacer
cggcagaggtgccggcggcaccagtt	Protospacer
..**** ****************.. 

157. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NZ_CP054616 (Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.769

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
gctccccaccggcagcggcacctgca	Protospacer
  . ****************** **.

158. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to NC_023591 (Mycobacterium phage Adler, complete genome) position: , mismatch: 6, identity: 0.769

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
ccaacccaccggcagcggcaccgcgc	Protospacer
*  .*******************   

159. spacer 11.14|3915071|26|NZ_CP009449|CRT matches to KF981876 (UNVERIFIED: Mycobacterium phage ADLER F1725, complete genome) position: , mismatch: 6, identity: 0.769

cgcgcccaccggcagcggcaccggcg	CRISPR spacer
ccaacccaccggcagcggcaccgcgc	Protospacer
*  .*******************   

160. spacer 2.1|691026|31|NZ_CP009449|CRISPRCasFinder matches to MK977708 (Mycobacterium phage Fulbright, complete genome) position: , mismatch: 7, identity: 0.774

agcgcgaacggcaagccgaaccgttggaccc	CRISPR spacer
cgcgcgaacggcatcccgaaccgttgaccgg	Protospacer
 ************  ***********. *  

161. spacer 2.1|691026|31|NZ_CP009449|CRISPRCasFinder matches to MG099948 (Mycobacterium phage Philonius, complete genome) position: , mismatch: 7, identity: 0.774

agcgcgaacggcaagccgaaccgttggaccc	CRISPR spacer
cgcgcgaacggcatcccgaaccgttgaccgg	Protospacer
 ************  ***********. *  

162. spacer 2.1|691026|31|NZ_CP009449|CRISPRCasFinder matches to MH926055 (Mycobacterium phage Chewbacca, complete genome) position: , mismatch: 7, identity: 0.774

agcgcgaacggcaagccgaaccgttggaccc	CRISPR spacer
cgcgcgaacggcatcccgaaccgttgaccgg	Protospacer
 ************  ***********. *  

163. spacer 2.1|691026|31|NZ_CP009449|CRISPRCasFinder matches to MT723932 (Mycobacterium phage Schnauzer, complete genome) position: , mismatch: 7, identity: 0.774

agcgcgaacggcaagccgaaccgttggaccc	CRISPR spacer
cgcgcgaacggcatcccgaaccgttgaccgg	Protospacer
 ************  ***********. *  

164. spacer 2.1|691026|31|NZ_CP009449|CRISPRCasFinder matches to KU935726 (Mycobacterium phage Xerxes, complete genome) position: , mismatch: 7, identity: 0.774

agcgcgaacggcaagccgaaccgttggaccc	CRISPR spacer
cgcgcgaacggcatcccgaaccgttgaccgg	Protospacer
 ************  ***********. *  

165. spacer 2.1|691026|31|NZ_CP009449|CRISPRCasFinder matches to KU935730 (Mycobacterium phage Pipsqueaks, complete genome) position: , mismatch: 7, identity: 0.774

agcgcgaacggcaagccgaaccgttggaccc	CRISPR spacer
cgcgcgaacggcatcccgaaccgttgaccgg	Protospacer
 ************  ***********. *  

166. spacer 2.1|691026|31|NZ_CP009449|CRISPRCasFinder matches to MH316570 (Mycobacterium phage Silvafighter, complete genome) position: , mismatch: 7, identity: 0.774

agcgcgaacggcaagccgaaccgttggaccc	CRISPR spacer
cgcgcgaacggcatcccgaaccgttgaccgg	Protospacer
 ************  ***********. *  

167. spacer 2.1|691026|31|NZ_CP009449|CRISPRCasFinder matches to MK524518 (Mycobacterium phage Smurph, complete genome) position: , mismatch: 7, identity: 0.774

agcgcgaacggcaagccgaaccgttggaccc	CRISPR spacer
cgcgcgaacggcatcccgaaccgttgaccgg	Protospacer
 ************  ***********. *  

168. spacer 2.1|691026|31|NZ_CP009449|CRISPRCasFinder matches to MK524515 (Mycobacterium phage Parmesanjohn, complete genome) position: , mismatch: 7, identity: 0.774

agcgcgaacggcaagccgaaccgttggaccc	CRISPR spacer
cgcgcgaacggcatcccgaaccgttgaccgg	Protospacer
 ************  ***********. *  

169. spacer 2.1|691026|31|NZ_CP009449|CRISPRCasFinder matches to MH697585 (Mycobacterium phage Gex, complete genome) position: , mismatch: 7, identity: 0.774

agcgcgaacggcaagccgaaccgttggaccc	CRISPR spacer
cgcgcgaacggcatcccgaaccgttgaccgg	Protospacer
 ************  ***********. *  

170. spacer 2.1|691026|31|NZ_CP009449|CRISPRCasFinder matches to KM588359 (Mycobacterium phage Carcharodon, complete genome) position: , mismatch: 7, identity: 0.774

agcgcgaacggcaagccgaaccgttggaccc	CRISPR spacer
cgcgcgaacggcatcccgaaccgttgaccgg	Protospacer
 ************  ***********. *  

171. spacer 2.1|691026|31|NZ_CP009449|CRISPRCasFinder matches to MH697576 (Mycobacterium phage Aggie, complete genome) position: , mismatch: 7, identity: 0.774

agcgcgaacggcaagccgaaccgttggaccc	CRISPR spacer
cgcgcgaacggcatcccgaaccgttgaccgg	Protospacer
 ************  ***********. *  

172. spacer 2.1|691026|31|NZ_CP009449|CRISPRCasFinder matches to MH697593 (Mycobacterium phage Tapioca, complete genome) position: , mismatch: 7, identity: 0.774

agcgcgaacggcaagccgaaccgttggaccc	CRISPR spacer
cgcgcgaacggcatcccgaaccgttgaccgg	Protospacer
 ************  ***********. *  

173. spacer 2.1|691026|31|NZ_CP009449|CRISPRCasFinder matches to MG099936 (Mycobacterium phage Andies, complete genome) position: , mismatch: 7, identity: 0.774

agcgcgaacggcaagccgaaccgttggaccc	CRISPR spacer
cgcgcgaacggcatcccgaaccgttgaccgg	Protospacer
 ************  ***********. *  

174. spacer 2.1|691026|31|NZ_CP009449|CRISPRCasFinder matches to NC_031243 (Mycobacterium phage Xeno, complete genome) position: , mismatch: 7, identity: 0.774

agcgcgaacggcaagccgaaccgttggaccc	CRISPR spacer
cgcgcgaacggcatcccgaaccgttgaccgg	Protospacer
 ************  ***********. *  

175. spacer 2.1|691026|31|NZ_CP009449|CRISPRCasFinder matches to JN256079 (Mycobacterium phage Charlie, complete genome) position: , mismatch: 7, identity: 0.774

agcgcgaacggcaagccgaaccgttggaccc	CRISPR spacer
cgcgcgaacggcatcccgaaccgttgaccgg	Protospacer
 ************  ***********. *  

176. spacer 4.3|2021509|32|NZ_CP009449|CRISPRCasFinder matches to NZ_LT960615 (Hartmannibacter diazotrophicus strain E19T plasmid HDIAp1, complete sequence) position: , mismatch: 7, identity: 0.781

cggtgccgtttcccccggcgccgccgtccccg	CRISPR spacer
acgggccgttgcccccggcgccgccgaccgag	Protospacer
  * ****** *************** **  *

177. spacer 4.3|2021509|32|NZ_CP009449|CRISPRCasFinder matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

cggtgccgtttcccccggcgccg---ccgtccccg	CRISPR spacer
cggtgccgtttcccccttcgccggatacgacc---	Protospacer
****************  *****    ** **   

178. spacer 4.5|2021620|29|NZ_CP009449|CRISPRCasFinder matches to NZ_CP022999 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence) position: , mismatch: 7, identity: 0.759

cggcgccgccggcaccaaacagcaggccc	CRISPR spacer
cggcgccggcggcacccaacagcaactga	Protospacer
******** ******* *******. .  

179. spacer 4.8|2021784|33|NZ_CP009449|CRISPRCasFinder matches to NZ_CP027794 (Rhodococcus hoagii strain DSSKP-R-001 plasmid plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-agaacaacccgccgtctccgccggccaccaccg	CRISPR spacer
ctgcgcga-ccgccgtcgccgccggacaccaccg	Protospacer
  * .*.* ******** ******* ********

180. spacer 4.8|2021784|33|NZ_CP009449|CRISPRCasFinder matches to NZ_CP022542 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-2, complete sequence) position: , mismatch: 7, identity: 0.788

agaacaac-ccgccgtctccgccggccaccaccg	CRISPR spacer
-gtccgatgccgccggctccgccggtcaccaccg	Protospacer
 *  *.*. ****** *********.********

181. spacer 4.8|2021784|33|NZ_CP009449|CRISPRCasFinder matches to NZ_CP015737 (Shinella sp. HZN7 plasmid pShin-01, complete sequence) position: , mismatch: 7, identity: 0.788

agaacaacccgccgtctccgccggccaccaccg	CRISPR spacer
cgactaccgcgccgtcgccgccggcctccaccg	Protospacer
 ** .* * ******* ********* ******

182. spacer 11.15|3915125|35|NZ_CP009449|CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.8

cgatg-gcgccgacggaggggcagccaccggcgtcg	CRISPR spacer
-ggtgtgcgccgacggaggagcacccaccggggcag	Protospacer
 *.** *************.*** ******* *. *

183. spacer 4.5|2021620|29|NZ_CP009449|CRISPRCasFinder matches to NC_014841 (Pantoea sp. At-9b plasmid pPAT9B04, complete sequence) position: , mismatch: 8, identity: 0.724

cggcgccgccggcaccaaacagcaggccc	CRISPR spacer
tggcgccgccgggaccaaacagatacgtc	Protospacer
.*********** *********  .  .*

184. spacer 4.6|2021677|29|NZ_CP009449|CRISPRCasFinder matches to NZ_CP042824 (Rhizobium sp. WL3 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.724

ccaccccggtagcgccaccgccgagtgcg	CRISPR spacer
acaacacggtagcgccaccgccgaccagc	Protospacer
 ** * ****************** ..  

185. spacer 4.13|2021961|33|NZ_CP009449|PILER-CR matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.758

ggccagcggctccgccgttgcccccgggcatgc	CRISPR spacer
gaccagcgactccgccgtggcccccgtgtagaa	Protospacer
*.******.********* ******* *.* . 

186. spacer 4.13|2021961|33|NZ_CP009449|PILER-CR matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.758

ggccagcggctccgccgttgcccccgggcatgc	CRISPR spacer
gaccagcgactccgccgtagcccccgtgtagaa	Protospacer
*.******.********* ******* *.* . 

187. spacer 4.13|2021961|33|NZ_CP009449|PILER-CR matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 8, identity: 0.758

ggccagcggctccgccgttgcccccgggcatgc	CRISPR spacer
gaccagcgactccgccgtggcccccgtgtagaa	Protospacer
*.******.********* ******* *.* . 

188. spacer 7.13|3031020|29|NZ_CP009449|PILER-CR matches to MK599315 (Pseudomonas phage PA1C, complete genome) position: , mismatch: 8, identity: 0.724

tccgcgaaattcactgcgcgttattcaag	CRISPR spacer
gacgcgaaatacactgcgctttattttca	Protospacer
  ******** ******** *****.  .

189. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NZ_CP015451 (Dietzia lutea strain YIM 80766 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.771

cagcggcggggccggcggggggggcggg-gccaact	CRISPR spacer
ggccggcggggccggcgcgggggccgggcgccggc-	Protospacer
 . ************** ***** **** ***..* 

190. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.771

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
gagcggcggcgccggcggcgggggcggcaacaccg	Protospacer
 ******** ******** ******** . ** * 

191. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.771

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
gagcggcggcgccggcggcgggggcggcaacaccg	Protospacer
 ******** ******** ******** . ** * 

192. spacer 11.15|3915125|35|NZ_CP009449|CRT matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 8, identity: 0.771

cgatggcgccgacggaggggcagccaccggcgtcg	CRISPR spacer
catcgtcgccgacggaggggcgaccaccggcgact	Protospacer
*. .* ***************..********* * 

193. spacer 2.1|691026|31|NZ_CP009449|CRISPRCasFinder matches to NZ_CP014964 (Geobacter anodireducens strain SD-1 plasmid pSD, complete sequence) position: , mismatch: 9, identity: 0.71

agcgcgaacggcaagccgaaccgttggaccc	CRISPR spacer
ggaacgaacggcaagccgaaatgttggtgga	Protospacer
.* .**************** .*****    

194. spacer 2.1|691026|31|NZ_CP009449|CRISPRCasFinder matches to NC_015974 (Sphingobium sp. SYK-6 plasmid pSLPG, complete sequence) position: , mismatch: 9, identity: 0.71

agcgcgaacggcaagccgaaccgttggaccc	CRISPR spacer
taagcgaacggtaagccgaaccgctgaggcg	Protospacer
 . ********.***********.**.. * 

195. spacer 2.1|691026|31|NZ_CP009449|CRISPRCasFinder matches to NZ_CP005085 (Sphingobium sp. TKS plasmid pTK1, complete sequence) position: , mismatch: 9, identity: 0.71

agcgcgaacggcaagccgaaccgttggaccc	CRISPR spacer
taagcgaacggtaagccgaaccgctgaggcg	Protospacer
 . ********.***********.**.. * 

196. spacer 4.8|2021784|33|NZ_CP009449|CRISPRCasFinder matches to JN968479 (Haloarcula hispanica icosahedral virus 2, complete genome) position: , mismatch: 9, identity: 0.727

agaacaacccgccgtctccgccggccaccaccg	CRISPR spacer
ggtgtgtctcgccgtctccgccggcctcgaccg	Protospacer
.* ... *.***************** * ****

197. spacer 6.10|3028341|37|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019037 (Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.757

tgcgtcaagtgcggcaccgccgtcatgtcggtgtcga	CRISPR spacer
ggctgttgctgcagcaccgccgtcatctcggtgtcga	Protospacer
 **  . . ***.************* **********

198. spacer 8.3|3031609|39|NZ_CP009449|CRISPRCasFinder,CRT matches to NZ_CP014277 (Martelella sp. AD-3 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.769

tcaaaaacggggacggcatgctgcatgccctaacgtcgt----	CRISPR spacer
agaaaaacgaggacggcatgccgcatgcc----cgccgtccgc	Protospacer
  *******.***********.*******    **.***    

199. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NC_019957 (Mycobacterium sp. JS623 plasmid pMYCSM01, complete sequence) position: , mismatch: 9, identity: 0.743

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
gggcggcggggccggcggggcgggcggcagtatcg	Protospacer
 .****************** ****** . .* * 

200. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NC_008712 (Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence) position: , mismatch: 9, identity: 0.743

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
tcgcggccgggccggcggggagggcggcacgatcg	Protospacer
. ***** ************.****** .* * * 

201. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to MH513977 (Mycobacterium phage Mynx, complete genome) position: , mismatch: 9, identity: 0.743

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
gggcggcgggggcggcgggggcggcggcgacgatg	Protospacer
 .********* ********* ***** * *.*. 

202. spacer 4.3|2021509|32|NZ_CP009449|CRISPRCasFinder matches to NZ_CP018232 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.688

cggtgccgtttcccccggcgccgccgtccccg	CRISPR spacer
aagtggcttttcccccggcgccgccgcaggaa	Protospacer
 .*** * ******************.    .

203. spacer 4.3|2021509|32|NZ_CP009449|CRISPRCasFinder matches to CP053412 (Salmonella enterica strain 72-4606 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cggtgccgtttcccccggcgccgccgtccccg	CRISPR spacer
gctggccgtttctccccgcgccgccgtcagtt	Protospacer
    ********.*** ***********  . 

204. spacer 4.3|2021509|32|NZ_CP009449|CRISPRCasFinder matches to NZ_CP035515 (Haematobacter massiliensis strain OT1 plasmid pOT1-5, complete sequence) position: , mismatch: 10, identity: 0.688

cggtgccgtttcccccggcgccgccgtccccg	CRISPR spacer
ggcgaccgatacccccggcgccgccgtctgga	Protospacer
 *  .*** * *****************.  .

205. spacer 6.1|3027674|35|NZ_CP009449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 10, identity: 0.714

acttgcgcgcacaacgcatccgccatccacggggc	CRISPR spacer
gtcaccgcgcacaacacattcgccatccacacggt	Protospacer
...  **********.***.**********. **.

206. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NZ_CP015451 (Dietzia lutea strain YIM 80766 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.714

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
ggccggcggggccggcgcgggggccggggcgccgg	Protospacer
 . ************** ***** ******     

207. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NZ_CP015451 (Dietzia lutea strain YIM 80766 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.714

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
ggccggcggggccggcgcgggggccggggcgccgg	Protospacer
 . ************** ***** ******     

208. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NZ_CP015451 (Dietzia lutea strain YIM 80766 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.714

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
ggccggcggggccggcgcgggggccggggcgccgg	Protospacer
 . ************** ***** ******     

209. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NZ_CP015451 (Dietzia lutea strain YIM 80766 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.714

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
ggccggcggggccggcgcgggggccggggcgccgg	Protospacer
 . ************** ***** ******     

210. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NZ_CP015451 (Dietzia lutea strain YIM 80766 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.714

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
ggccggcggggccggcgcgggggccggggcgccgg	Protospacer
 . ************** ***** ******     

211. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NZ_CP015452 (Dietzia lutea strain YIM 80766 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.714

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
ggccggcggggccggcgcgggggccggggcgccgg	Protospacer
 . ************** ***** ******     

212. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NZ_CP015452 (Dietzia lutea strain YIM 80766 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.714

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
ggccggcggggccggcgcgggggccggggcgccgg	Protospacer
 . ************** ***** ******     

213. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NZ_CP015452 (Dietzia lutea strain YIM 80766 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.714

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
ggccggcggggccggcgcgggggccggggcgccgg	Protospacer
 . ************** ***** ******     

214. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NZ_CP015452 (Dietzia lutea strain YIM 80766 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.714

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
ggccggcggggccggcgcgggggccggggcgccgg	Protospacer
 . ************** ***** ******     

215. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NZ_CP015452 (Dietzia lutea strain YIM 80766 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.714

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
ggccggcggggccggcgcgggggccggggcgccgg	Protospacer
 . ************** ***** ******     

216. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.714

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
gagcggcgggggcggcgggggcggcggccgcggtg	Protospacer
 ********** ********* *****   *... 

217. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 10, identity: 0.714

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
cggggggggggcgggcggggggggcgggggggggc	Protospacer
*.* ** ***** ****************  .. .

218. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NZ_CP032344 (Azospirillum brasilense strain MTCC4038 plasmid p5, complete sequence) position: , mismatch: 10, identity: 0.714

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
ctcgcgcggggccggcggggcgggccgggcgaggc	Protospacer
*    *************** **** **** *. .

219. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NZ_CP033323 (Azospirillum brasilense strain Cd plasmid p5, complete sequence) position: , mismatch: 10, identity: 0.714

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
ctcgcgcggggccggcggggcgggccgggcgaggc	Protospacer
*    *************** **** **** *. .

220. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NZ_CP021082 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI1, complete sequence) position: , mismatch: 10, identity: 0.714

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
aggcggcgggggcggcgcggggggcggcggaacgg	Protospacer
 .********* ***** ********* *  *   

221. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to CP040467 (Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
ggacggcgggggcggcgggggcggcgggcgcctcg	Protospacer
 ..******** ********* ******  *  * 

222. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NZ_CP033317 (Azospirillum brasilense strain Sp 7 plasmid p5, complete sequence) position: , mismatch: 10, identity: 0.714

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
ctcgcgcggggccggcggggcgggccgggcgaggc	Protospacer
*    *************** **** **** *. .

223. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NZ_CP012919 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p5, complete sequence) position: , mismatch: 10, identity: 0.714

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
ctcgcgcggggccggcggggcgggccgggcgaggc	Protospacer
*    *************** **** **** *. .

224. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to MN694617 (Marine virus AFVG_250M855, complete genome) position: , mismatch: 10, identity: 0.714

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
cccgggcggggccggggggggggggggggggggtt	Protospacer
*   *********** ******** ****  ...*

225. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 11, identity: 0.686

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
ggcaggcggggcaggcggggcgggcggggacggtg	Protospacer
 .  ******** ******* ******** *... 

226. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NZ_LR134460 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 18, complete sequence) position: , mismatch: 11, identity: 0.686

cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
ccctatcggggccggcgggcggcgcggggccggtc	Protospacer
*  .. ************* ** ********....

227. spacer 11.11|3914846|35|NZ_CP009449|CRT matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 12, identity: 0.657

---cagcggcggggccggcggggggggcggggccaact	CRISPR spacer
gggcggcgggggcggcggcgggggcggcagggtag---	Protospacer
   *.**** ** * ********* ***.***. .