CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009459	Cedecea neteri strain ND14a, complete genome	6 crisprs	csa3,DEDDh,cas3,RT,WYL,DinG	0	1	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009459_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009459_1

1679423-1679498

Orphan

Consensus_repeat	Method
GGAGAGGGGGAAATCAGAAATGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009459_1

>merge|NZ_CP009459|1|1679423-1679498|CRISPRCasFinder
GGAGAGGGGGAAATCAGAAATGGTCAGGTTCTTTGTTCCCTCTCCCCCGTGTGGAGAGGGGGAAATCAGAAATGGT

>NZ_CP009459|1|1|1679423-1679498|CRISPRCasFinder
GGAGAGGGGGAAATCAGAAATGGT	CAGGTTCTTTGTTCCCTCTCCCCCGTGT
GGAGAGGGGGAAATCAGAAATGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009459.1\|WP_039299975.1\|1677425_1678271_+\|triphosphoribosyl-dephospho-CoA-synthase-CitG	unknown	unknown	gnl\|CDD\|132169
NZ_CP009459.1\|WP_156107061.1\|1683649_1684180_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP009459.1\|WP_039299951.1\|1668952_1670569_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP009459.1\|WP_039299986.1\|1682329_1683127_-\|membrane-protein	unknown	unknown	gnl\|CDD\|227949
NZ_CP009459.1\|WP_156107062.1\|1684202_1684784_-\|cytochrome-b	unknown	unknown	gnl\|CDD\|225580
NZ_CP009459.1\|WP_039299957.1\|1672261_1673131_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP009459.1\|WP_039299989.1\|1683123_1683672_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|237123
NZ_CP009459.1\|WP_008459989.1\|1679806_1680019_+\|RNA-chaperone/antiterminator-CspA	unknown	unknown	gnl\|CDD\|224197
NZ_CP009459.1\|WP_039299966.1\|1674493_1675369_+\|citrate-(pro-3S)-lyase-subunit-beta	unknown	unknown	gnl\|CDD\|130649
NZ_CP009459.1\|WP_039299979.1\|1678357_1679389_+\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225041
NZ_CP009459.1\|WP_039299963.1\|1674203_1674497_+\|citrate-lyase-acyl-carrier-protein	unknown	unknown	gnl\|CDD\|237316
NZ_CP009459.1\|WP_052045556.1\|1681534_1682317_+\|Uxu-operon-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182318
NZ_CP009459.1\|WP_039299969.1\|1675379_1676903_+\|citrate-lyase-subunit-alpha	unknown	unknown	gnl\|CDD\|225593
NZ_CP009459.1\|WP_039299972.1\|1676908_1677448_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|377135
NZ_CP009459.1\|WP_039299954.1\|1670873_1672238_+\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP009459.1\|WP_039299982.1\|1680275_1681460_+\|mannonate-dehydratase	unknown	unknown	gnl\|CDD\|235172
NZ_CP009459.1\|WP_156107063.1\|1684916_1685975_-\|adenosylhomocysteinase	unknown	unknown	gnl\|CDD\|240619
NZ_CP009459.1\|WP_039305995.1\|1686232_1686817_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|132716
NZ_CP009459.1\|WP_039299998.1\|1686875_1688549_-\|carbohydrate-porin	unknown	unknown	gnl\|CDD\|238656
NZ_CP009459.1\|WP_039299960.1\|1673135_1674179_+\|[citrate-(pro-3S)-lyase]-ligase	unknown	unknown	gnl\|CDD\|225595

Protein	Function_ID	Function_description	E-value
NZ_CP009459.1\|WP_039299975.1\|1677425_1678271_+\|triphosphoribosyl-dephospho-CoA-synthase-CitG	gnl\|CDD\|132169	TIGR03125, citrate_citG, triphosphoribosyl-dephospho-CoA synthase CitG. Triphosphoribosyl-dephospho-CoA is transferred to, and becomes the prosthetic group of, the respective acyl carrier protein subunits of both citrate lyase and malonate decarboxylase. Members of this protein family are triphosphoribosyl-dephospho-CoA synthases specifically from citrate lyase systems. This protein sometimes occurs as a fusion protein with CitX, the phosphoribosyl-dephospho-CoA transferase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Energy metabolism, Fermentation].	1.00694e-113
NZ_CP009459.1\|WP_156107061.1\|1683649_1684180_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	7.88601e-10
NZ_CP009459.1\|WP_039299951.1\|1668952_1670569_-\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	8.85737e-167
NZ_CP009459.1\|WP_039299986.1\|1682329_1683127_-\|membrane-protein	gnl\|CDD\|227949	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription].	1.93028e-05
NZ_CP009459.1\|WP_156107062.1\|1684202_1684784_-\|cytochrome-b	gnl\|CDD\|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	2.34542e-39
NZ_CP009459.1\|WP_039299957.1\|1672261_1673131_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	7.56842e-86
NZ_CP009459.1\|WP_039299989.1\|1683123_1683672_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|237123	PRK12511, PRK12511, RNA polymerase sigma factor; Provisional.	1.66268e-30
NZ_CP009459.1\|WP_008459989.1\|1679806_1680019_+\|RNA-chaperone/antiterminator-CspA	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	2.53747e-37
NZ_CP009459.1\|WP_039299966.1\|1674493_1675369_+\|citrate-(pro-3S)-lyase-subunit-beta	gnl\|CDD\|130649	TIGR01588, Citrate_lyase_subunit_beta, citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff. [Energy metabolism, Fermentation].	2.17501e-160
NZ_CP009459.1\|WP_039299979.1\|1678357_1679389_+\|NADP-dependent-oxidoreductase	gnl\|CDD\|225041	COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only].	0
NZ_CP009459.1\|WP_039299963.1\|1674203_1674497_+\|citrate-lyase-acyl-carrier-protein	gnl\|CDD\|237316	PRK13253, PRK13253, citrate lyase subunit gamma; Provisional.	4.29679e-41
NZ_CP009459.1\|WP_052045556.1\|1681534_1682317_+\|Uxu-operon-transcriptional-regulator	gnl\|CDD\|182318	PRK10225, PRK10225, Uxu operon transcriptional regulator.	1.11376e-139
NZ_CP009459.1\|WP_039299969.1\|1675379_1676903_+\|citrate-lyase-subunit-alpha	gnl\|CDD\|225593	COG3051, CitF, Citrate lyase, alpha subunit [Energy production and conversion].	0
NZ_CP009459.1\|WP_039299972.1\|1676908_1677448_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|377135	pfam03802, CitX, Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase.	2.64809e-80
NZ_CP009459.1\|WP_039299954.1\|1670873_1672238_+\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	2.78748e-165
NZ_CP009459.1\|WP_039299982.1\|1680275_1681460_+\|mannonate-dehydratase	gnl\|CDD\|235172	PRK03906, PRK03906, mannonate dehydratase; Provisional.	0
NZ_CP009459.1\|WP_156107063.1\|1684916_1685975_-\|adenosylhomocysteinase	gnl\|CDD\|240619	cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains. S-adenosyl-L-homocysteine hydrolase (SAHH, AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homotetramers, with each monomer binding one molecule of NAD+.	1.78007e-66
NZ_CP009459.1\|WP_039305995.1\|1686232_1686817_+\|histidine-phosphatase-family-protein	gnl\|CDD\|132716	cd07040, HP, Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phosphorelay signaling system; phytases scavenge phosphate from extracellular sources. Deficiency and mutation in many of the human members result in disease, for example erythrocyte BPGM deficiency is a disease associated with a decrease in the concentration of 2,3-BPG. Clinical applications include the use of prostatic acid phosphatase (PAP) as a serum marker for prostate cancer. Agricultural applications include the addition of phytases to animal feed.	0.00141764
NZ_CP009459.1\|WP_039299998.1\|1686875_1688549_-\|carbohydrate-porin	gnl\|CDD\|238656	cd01346, Maltoporin-like, The Maltoporin-like channels (LamB porin) form a trimeric structure which facilitate the diffusion of maltodextrins and other sugars across the outer membrane of Gram-negative bacteria. The membrane channel is formed by an 18-strand antiparallel beta-barrel (18,22). Loop 3 folds into the core to constrict pore size. Long irregular loops are found on the extracelllular side, while short turns are in the periplasm.Tightly-bound water molecules are found in the eyelet of the passage, and only substrates that can displace and replace the broken hydrogen bonds are likely to enter the pore. In the MPR structure, loops 4,6, and 9 have the greatest mobility and are highly variable; these are postulated to attract maltodextrins.	1.20979e-114
NZ_CP009459.1\|WP_039299960.1\|1673135_1674179_+\|[citrate-(pro-3S)-lyase]-ligase	gnl\|CDD\|225595	COG3053, CitC, Citrate lyase synthetase [Energy production and conversion].	3.46774e-152

>NZ_CP009459.1|WP_039299979.1|1678357_1679389_+|NADP-dependent-oxidoreductase
MAQTAEKNRRFVLAKRPQGMPTREDIHLEEVAVPTPGKGEVLLRTLFLSLDPYMRGRMSDAKSYSAPIAIGEVIVGGTVSRVESSQHPDYQPGDLVLADSGWQDYSLSNGEGLQKLEKNMSHPSWALGLLGMPGFTGYMGLTDIGNPQPGETVVVAAASGAVGSVVGQTARLRGARVIGIAGGEDKCRYVKETLKFDECLDHRASDFAAQLAKACPNGIDVYFENVGGAVFDAVFPLLNTKARVPVCGVVSQYNGNNSAFEHDRLPELMATILKKRMRVEGFIIFQDYGHRYPEFYKQMSEWIAAGEIEFREDIVDGLENTVEAFQGLLSGKNFGKLIVKVAE
>NZ_CP009459.1|WP_039299975.1|1677425_1678271_+|triphosphoribosyl-dephospho-CoA-synthase-CitG
MAGLPGIKSSTAVAPDVPALARQALLDEVWLTPKPGLVDAANNGSHQDMDLPMFLGSIAAIGPWLSTFHALGWEHAGRGACEMLRLIRPAGIACEQAMYQATQGVNTHKGGVFSLGLLSTAAGRLQGQGKALTASAVCSTVSEICSGIVERELVTARKASSVGERLYQQFGLTGARGEAESGFLTVRQHVLPYWQTESCPKRRLLAAMLRLMAANPDTNLVSRGGLNGLRYVQRYAARLIQQGWHEDDLRQMDADLIARNLSPGGSADLLAVSAVLAEIAV
>NZ_CP009459.1|WP_039299972.1|1676908_1677448_+|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSETLVEAEGVTLEALLEAKERRAHRQHEWLVKHRQPVLSLTLVAPGAVKDSIRYRNCMAVALQACDQLLWGNRWPVLERQVLWLPTGAEAMWSVAHSASELKAATVGLEQTHPLGRLWDADVICPDNGPVGRTSLDLASRRCLVCNEPARACARSRRHPMDEVTARVERLIDGWFARD
>NZ_CP009459.1|WP_039299969.1|1675379_1676903_+|citrate-lyase-subunit-alpha
MSNMTEFLHLEYPHLAHLRSFDGAHQTTPWLADADAKKTRKLCDTLEQAIAQSGLQDGMTISFHHAFREGDRVINHVVATLAHLGFKDLTLASSSLMTCNEALIEPIRNGVITRIYTSGMRGKLAEAISHGLMAEPVQIHSHGGRVKLLQDGELKIDVAFLGVPCSDEYGNANGTHGKSCCGSLGYAKVDAHFARKVVLLTEELVPFPNMPASLMQDEVDYIVQVDTVGDPAKISVGAARVTSNPRELMIARTAAEVIEHSGYFRTGFSMQTGSGAAATACTRFMEEKMERNGVVARFALGGITGSLVDLHEKGLIEKLLDTQCFDGQAAASLARNPNHVEISTNVYANPGAKATSCDQLDVVILSALEIDIDFNVNVITGSDGVMRGASGGHCDVASAANLTIVVAPLLRTRIPTVVKRVTTCVTPGESIDVLVTDHGVAVNPARPEIRERLEGAGMKIVSIEDLYQRAISLTGEPKPIEFTPRIVGVIRYRDGSVIDVVRQVKEE
>NZ_CP009459.1|WP_039299966.1|1674493_1675369_+|citrate-(pro-3S)-lyase-subunit-beta
MKKLRRSMLFLPGANAAMLSTAFIYRPDSIMFDLEDAVALREKDTARVLVFHALQHPMYRDIETVVRINPLNTPFGLADLEAVVRAGVDVVRLPKTDTPEDIFLLESHLERIEKACGREPGSTKLMAAIESAVGVINAVAIARSSPRLIGIALAAFDYVMDMQTERGDGTELFYARCAVLHAARAAGIDAFDVVWSDVNNEAGFLREVELIRKMGFNGKSLINPRQIELLHNAYAPTQDEVDYARRVIAAADEGERNGLGVVSLNGKMIDAPIINHAQVVLERAAASGVRR
>NZ_CP009459.1|WP_039299963.1|1674203_1674497_+|citrate-lyase-acyl-carrier-protein
MRIVKQALAGTLESSDLLVRVAPAEGEFSLMIHSEVQKQFGDQIRRVAEKTLAQLGVKEGIFILEDKGALDCVIRARLQSAVLRAADAEQIDWGKLQ
>NZ_CP009459.1|WP_039299960.1|1673135_1674179_+|[citrate-(pro-3S)-lyase]-ligase
MFQPNPIEFSIVDPLRQPQALAAIRDLLGRNQLGLDVDIQLFVVALSGTRIVGCAGLAWRTIKCVAVDEAWRGDNLSVRLLGEIQHIAMERGQAHLFLFTRPYNLDRFRQSGFWPLVQVDEAAVLMENTPVGISRYCAGLEKQRKPGNRIGAIVMNANPFTLGHRYLAEQAAQRCDWLHLFVVREDASFFPFEERWEMVRQGVAHLPNVVVHPGSDYLISRATFPGYFLKESGLIDKTWSAMDLMIFRDYVAPALGVTHRFVGNEPFCAVTREYNQAMRYWLEVHRHHSAASIQVIELPRKCHAAGREISASEVRALLKSQQMARIRDIVPDSTFSHLQRHYARDVA
>NZ_CP009459.1|WP_039299957.1|1672261_1673131_+|fumarylacetoacetate-hydrolase-family-protein
MKLASYVLQGQRSYGVVTPEGIVDLGRRLGSRFADLKALLAADAVHEALAFAGLKADVAASDVRWLPVIERPEKILCVGMNYADKRKEFDQHNPAPTLFVRFADSQTGHDSPVVKPHHSSEFDYEGELAVIIGKGGVNISASDALNHVAGYSCYMDGSARDWQHTWFTAGKNWPQTGAFGPWMTTSDEIRDPHDLAIRTWLNGRMVQEDNTSSMIHKVAELIEYISTFTSLSAGDVIITGSPGGVGKKRTPPLFMQPGDRIEVEIERIGHLSNVIVAAREPLASGAVAH
>NZ_CP009459.1|WP_039299954.1|1670873_1672238_+|2-hydroxycarboxylate-transporter-family-protein
MSTTDDSYNIIPESIDINKPTLKERWWHILDSWKVGIIPLPLFVLAGALIAIDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVIGKMGAAAICATFIPSALVYYGLLPDVVVESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLRIFFPMLCGEVVGMIVGMGVGLALGLEPFQIFFFLILPIMAGGVGEGAIPLSIGYATLLHMDQGVALGRILPIVMLGSLTAIVISGCLNQLGKRFPHLTGEGELMPGKTSQGEKEQTAALFNGKADVTTIASGALLAVLLYMVGMLLHKLIGLPAPVGMLFVAVLIKLCHGVSPRMLAGSQVVYKFFQTAVTYPILFAVGVAITPWNELVDAFTITNLLVIVSTVSALVATGFFVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSVALLVLGNFLV
>NZ_CP009459.1|WP_039299951.1|1668952_1670569_-|sensor-histidine-kinase
MKVSFQIRLFIYLVAFFSVLFAMLGTYYYFDVGRQLYQEMSTRARIQAEEIALIPTLQESVEKKDIPAIHNFMQKLVVHSDASFIVIGDEHGIHLYHSVHADRVGKTLVGGDNEEVLQGKSITTLRKGGLGLSLRSKAPIFDQHGKVIGIVSVGYLKSYLDDVTSGKVINILLAAIILLLALFIFSWYFTRSIKRQMFSLEPRQISLLVRQQKAMMESIYEGVIAIDSHSQIEVINKAAKKLLGLEQPSREIRGKQIAEVIQPVTFFDPEVMLARDTHDEICAFNDLSVLASRVRIELEGVLQGWVITFRDRKDIDSLSFQLSQVKRYVDNLRIMRHEQLNRMATLAGLLHMARYDDAKRYIKAQSEHAQEVLDFVSARFCSATLCGLLLGKYARAREKGVSLAFDPACSMARMPTNVPESELISIIGNLLDNAIEATQRAEGEHQPVEVYIVINDRELVIEVADHGVGIAPELRDHIFTPGVTTKTHGDHGLGLHLIASYVALAKGTVEVSDNLPSGTVFSVFIPDVVVPGSDLSPT
>NZ_CP009459.1|WP_008459989.1|1679806_1680019_+|RNA-chaperone/antiterminator-CspA
MSNKMTGLVKWFNAEKGFGFISPTDGSKDVFVHFSAIQSDSFKTLDEGQKVEFSIENGAKGPAAANVVAL
>NZ_CP009459.1|WP_039299982.1|1680275_1681460_+|mannonate-dehydratase
MKQTWRWYGPNDPVSLADARQAGATGIVTALHHIPNGEVWPVEEILKRKAVVEAAGLVWSVVESVPIHEEIKTHRGQYDLWIDNYCQSLRNLAECGIYTVCYNFMPVLDWTRTDLEYPLPDGSKALRFDQIEFAAFELHILKRKGAEADYSAEEIEQANRRFAEMREDEKARLTRNIIAGLPGAEEGYTLDQFRAQLDTYKDIDKAKLRENFAYFLEAIIPVAEQVGIKMAVHPDDPPRPILGLPRIVSTVEDMQWMVDAVNSPANGFTMCTGSYGVRADNDLVGMIKRFGPRIYFTHLRSTLREDNPKTFHEAAHLYGDVDMYEVVKAIVEEEQRRKGAGQSELIPMRPDHGHQMLDDLNKKVNPGYSAIGRLKGLAEVRGVEMAIQRAFFGK
>NZ_CP009459.1|WP_052045556.1|1681534_1682317_+|Uxu-operon-transcriptional-regulator
MKPQIQDKPAAQPQRPYQEVGVMLRDMIARQQYALGDRLPPEREIAALLSVSRTVVREALIMLEIEGLVEVRRGAGIFVVAMPDKLVNPPVSTSQCNDAGPFELLQARQLLESNIAEFAAQQATREDILKMRQALQVEEQELVAGDNESGDRQFHLAVAEATHNSMLVELFKQSWQWRENNPMWIQLHSHLENNHYRQEWLADHKQILAALIKKDAKAAKHAMWQHLENVKNRLLELSDVDDINFDGYLFESWPLNEPGR
>NZ_CP009459.1|WP_039299986.1|1682329_1683127_-|membrane-protein
MTRQSFSAPWSDEAIVAWLDGEMREDERHAFEQQLNNDAALAARVEPLMQSHLPLEQAFAPLLEEAPVNRMQAKLNVLLHQPVNVNQQAQGVSRRSLIAASLSFLAVGVLAGRFIRPGEQKLRGEPEIRDLIAQYMSLYSAETLADINVTPQALQNGLNRMQQDIGLRLQQAEVEIPEAELKSVRMLRYDSTSIAQMAYLHASYGPMALCISRSKAADSPALKHEVRRGLNLVWWRSKGYEYVLIGRNPQQDLQQSGELLQRQLV
>NZ_CP009459.1|WP_039299989.1|1683123_1683672_-|sigma-70-family-RNA-polymerase-sigma-factor
MTGTRSPKAEGIKITVNEVRLQLAQHLARLWRYGMVLSRNRDVAEDLVQSTCVRALERCSQFQSGTRIDRWLFAILYSIWINEIRALRVRQGQGFVDSDELSQLADSESTEDKHQYHALLQQVSELPEAQRNTVFLVYVEGFTYQEAADTLAIPIGTVMSRLAAARLTLARHLMPTMKKELK
>NZ_CP009459.1|WP_156107061.1|1683649_1684180_-|tetratricopeptide-repeat-protein
MPSTRKLLPLLCLVASGLFYSAAASAMGDDDSKTPDCPKGQVYDSKTKTCTVEKSSMLSDGDKTQYAYHLAKSGRYQEALNLLDTLQQPNTREAWNYRGYATRKLGRTDEGIGYYQRSIALDPHYAKVREYLGEAWMIKGRPDLAKAQLATIKTLCGTGCEEYRDLKAAIDGHPES
>NZ_CP009459.1|WP_156107062.1|1684202_1684784_-|cytochrome-b
MPPEAAPLRKRYDAFSMALHWVTAFCVIFLFASAHIWEVLERGTPLRKGLQSLHISFGILLSAVIVVRLFWRISAAFSPSRKLEKVPMPGAFRIAAHATHGVLYILLLTQAMLGFLFRWAQGEPFWFFNLFEVPDVFNIDPTLRHTLAMLHNNVAWALILLAGAHAAAALIHHYVLRDGTLRRMLPACKGNSR
>NZ_CP009459.1|WP_156107063.1|1684916_1685975_-|adenosylhomocysteinase
MVRTLKQVQALPDLSHVRIACNMHLDLKMIPLVEGLLKKNAKVFLTTCNPTTVQDDVVAYLVAAGAEACAWRNMNDADWRDSWEKAIAWRPTHLCEMGADITTLLHQRGEFGDVVACLEATGSGVNRLADLRPGYPIFNWDDLPVKEGLHNRHMVGLTAWQTFFQTTHLTLHEKKVLVIGYGLVGQGVAAAAKAYGGQVMVAELDPARRLQAAYDGWHVVDIHDVIASTDVVATATGAKKVVSAAVLDKAKDGVFVLNVGHVAEEIDCGYLQQYPTEEVMPFINAYQLNGKTLYLMANGSMLNLTAGFGDSLNAFDVTLAVMASGIKHIVTDGQHAEKAVYLLPQSVWEKAL
>NZ_CP009459.1|WP_039305995.1|1686232_1686817_+|histidine-phosphatase-family-protein
MIKKALVVLLSSALLTPMIAKADSTIVFLRHGEKPANNSGQLTCKGLNRALQLPSVLLTQYGKPDAIYAAAPKENKTGSSLRPLTTITPTAIRLSQAIDLHYHAEQTDELADDLLKTQSSGRLTFVSWEHKNLVIAAQKLVKKTGGDPTVVPKWPGSDFDSLYIIKLDDQKRFKSFTHGAEGLNTVPDSCAGAS
>NZ_CP009459.1|WP_039299998.1|1686875_1688549_-|carbohydrate-porin
MNSNLLKVSLLSASILLALSSTHAMAAKLTVEQRLELLERQLSENKSELNKTQKELAIYKDKVAQLQPAGNNVQSGPAQVNQTVYSPVADNIENENNHLDTKSPPTPVKGTQKVAVVNNEGGKTTVENVTLKDISKYIKDDIGFSYEGYFRSGWAAANRGSAQTYAAGSLGRFGNEMSGWFDLTLNQRVYNQDGKTANAIVTYDGNVGEQYNDAWFGDNNGNENIMQFSDIFLTTRGFLPFAPEADFWVGKHKLPEYEIQMLDWKSLTTQVAAAIGIQNWNLGVGQLDASLSRNDVDVYSRDFSHTTQMNTNSVDLRYRNIPLWEDGSLSLMGKYAFANKTDDQKDNENNGSFFKLKDTWMATAIVRQDLPRDTFNEFTLQVANNSYASSFANFSGASNSMAPGRYYYGDQTDGVAWRLISQGEMYLADKIIMANALVYSQGSDVYSYESGAHSDFSSIRAVIRPAWIWDTWNQTGLELSWFTQKNKTEQGVNLKESGYKTTLYHALKVGPSLLGSRPEIRFYGTYLNILDNELSNFRFNEKSKNEFMAGVQAEVWW

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Crispr_ID: NZ_CP009459_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009459_2

2420466-2420557

Orphan

Consensus_repeat	Method
GATGCATTGTTTATCCCATCTCCCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009459_2

>merge|NZ_CP009459|2|2420466-2420557|CRISPRCasFinder
GATGCATTGTTTATCCCATCTCCCTTTAGGGAGAGGGTTAGGGCGAGGGAGAAAACATATAACGGGATGCATTGTTTATCCCCTCTCCCTTT

>NZ_CP009459|2|2|2420466-2420557|CRISPRCasFinder
GATGCATTGTTTATCCCATCTCCCTTT	AGGGAGAGGGTTAGGGCGAGGGAGAAAACATATAACGG
GATGCATTGTTTATCCCCTCTCCCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009459.1\|WP_039301337.1\|2428066_2428567_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381603
NZ_CP009459.1\|WP_039301312.1\|2409068_2409932_-\|hydroxyquinol-1,2-dioxygenase	unknown	unknown	gnl\|CDD\|239544
NZ_CP009459.1\|WP_039301347.1\|2432357_2433158_+\|EscJ/YscJ/HrcJ-family-type-III-secretion-inner-membrane-ring-protein	unknown	unknown	gnl\|CDD\|274190
NZ_CP009459.1\|WP_039291356.1\|2418612_2419344_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224095
NZ_CP009459.1\|WP_039301344.1\|2430592_2431567_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP009459.1\|WP_008460970.1\|2431662_2431872_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009459.1\|WP_039301314.1\|2410210_2410777_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NZ_CP009459.1\|WP_039301350.1\|2433163_2433778_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009459.1\|WP_039291353.1\|2415503_2416415_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270334
NZ_CP009459.1\|WP_039301310.1\|2407736_2409020_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|182774
NZ_CP009459.1\|WP_039306108.1\|2422325_2427596_+\|AvrE-family-type-3-secretion-system-effector	unknown	unknown	gnl\|CDD\|338078
NZ_CP009459.1\|WP_039301334.1\|2427600_2428026_+\|DspF/AvrF-protein	unknown	unknown	gnl\|CDD\|341107
NZ_CP009459.1\|WP_039291373.1\|2431937_2432351_+\|type-III-secretion-system-protein	unknown	unknown	gnl\|CDD\|374927
NZ_CP009459.1\|WP_039301319.1\|2413803_2415222_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP009459.1\|WP_039301331.1\|2420693_2421815_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225406
NZ_CP009459.1\|WP_039301328.1\|2419539_2420295_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|185003
NZ_CP009459.1\|WP_039301325.1\|2417684_2418629_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
NZ_CP009459.1\|WP_039301322.1\|2416533_2417685_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224095
NZ_CP009459.1\|WP_039301316.1\|2412339_2413761_-\|trehalose-6-phosphate-synthase	unknown	unknown	gnl\|CDD\|274112
NZ_CP009459.1\|WP_039301341.1\|2428766_2429786_+\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381594

Protein	Function_ID	Function_description	E-value
NZ_CP009459.1\|WP_039301337.1\|2428066_2428567_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381603	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins. Lytic transglycosylase-like protein, similar to Escherichia coli invasion protein IagB. IagB is encoded within a pathogenicity island in Salmonella enterica and has been shown to degrade polymeric peptidoglycan. IagB-like invasion proteins are implicated in the invasion of eukaryotic host cells by bacteria. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Members of this family resemble the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	4.67171e-44
NZ_CP009459.1\|WP_039301312.1\|2409068_2409932_-\|hydroxyquinol-1,2-dioxygenase	gnl\|CDD\|239544	cd03461, 1,2-HQD, Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.	2.60366e-133
NZ_CP009459.1\|WP_039301347.1\|2432357_2433158_+\|EscJ/YscJ/HrcJ-family-type-III-secretion-inner-membrane-ring-protein	gnl\|CDD\|274190	TIGR02544, YOP_proteins_translocation_lipoprotein, type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	3.31458e-79
NZ_CP009459.1\|WP_039291356.1\|2418612_2419344_+\|ABC-transporter-permease	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	1.12632e-71
NZ_CP009459.1\|WP_039301344.1\|2430592_2431567_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	2.6012e-97
NZ_CP009459.1\|WP_039301314.1\|2410210_2410777_+\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	2.3304e-23
NZ_CP009459.1\|WP_039291353.1\|2415503_2416415_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270334	cd13616, PBP2_OsmF, Substrate-binding domain OsmF of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein OsmF of an ABC transporter (YehZYXW) from Escherichia coli is predicted to be involved in uptake of compatible solutes such as choline, L-proline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. OsmF belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.86728e-164
NZ_CP009459.1\|WP_039301310.1\|2407736_2409020_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	gnl\|CDD\|182774	PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional.	0
NZ_CP009459.1\|WP_039306108.1\|2422325_2427596_+\|AvrE-family-type-3-secretion-system-effector	gnl\|CDD\|338078	pfam11725, AvrE, Pathogenicity factor. This family is secreted by gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and the fire blight plant pathogen Erwinia amylovora, amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system. The family is long and carries a number of predicted functional regions, including in Erwinia stewartii, an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localization signal at 1358-1361. this conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas. A double beta-propeller structure is found towards the N-terminus.	4.07627e-141
NZ_CP009459.1\|WP_039301334.1\|2427600_2428026_+\|DspF/AvrF-protein	gnl\|CDD\|341107	cd17024, T3SC_IA_DspF-like, Class IA type III secretion system chaperone protein, similar to Erwinia amylovora DspF (DspF/AvrF family protein). This family includes type III secretion system (T3SS) chaperone proteins similar to Erwinia amylovora DspF, Pantoea stewartii WtsE, Pseudomonas viridiflava AvrF, and similar proteins, all of which bind AvrE family type III effector proteins. In E. amylovora, a gram-negative enterobacterium that causes a devastating blight disease of apple and pear trees, the T3SS allows injection of effector DspE via the chaperone DspF. DspE has been shown to interact with several apple proteins, suppress salicylic acid-mediated host defenses and cause necrotic cell death in host and non-host plants. In Pectobacterium carotovorum, DspE is required early in solanum tuberosum leaf infection to cause cell death. Effector WtsE in P. stewartii causes disease-associated cell death in corn and requires the chaperone protein WtsF for stability.	2.52517e-35
NZ_CP009459.1\|WP_039291373.1\|2431937_2432351_+\|type-III-secretion-system-protein	gnl\|CDD\|374927	pfam17001, T3SS_basalb_I, Type III secretion basal body protein I, YscI, HrpB, PscI. T3SS_basalb_I represents a family of Gram-negative type III secretion basal body proteins I. It is the inner rod protein of the secreted needle. YscI is suggested to form a rod that allows substrate passage across the inner membrane of the needle protein YscF through it.	7.45854e-08
NZ_CP009459.1\|WP_039301319.1\|2413803_2415222_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	3.21053e-87
NZ_CP009459.1\|WP_039301331.1\|2420693_2421815_-\|cupin-domain-containing-protein	gnl\|CDD\|225406	COG2850, COG2850, Uncharacterized conserved protein [Function unknown].	6.51191e-159
NZ_CP009459.1\|WP_039301328.1\|2419539_2420295_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|185003	PRK15043, PRK15043, HTH-type transcriptional regulator MlrA.	2.2363e-122
NZ_CP009459.1\|WP_039301325.1\|2417684_2418629_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	1.19968e-175
NZ_CP009459.1\|WP_039301322.1\|2416533_2417685_+\|ABC-transporter-permease	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	3.32092e-64
NZ_CP009459.1\|WP_039301316.1\|2412339_2413761_-\|trehalose-6-phosphate-synthase	gnl\|CDD\|274112	TIGR02400, Alphaalpha-trehalose-phosphate_synthase, alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsible for synthesis of only trace amounts of trehalose while the majority is synthesized by the TreYZ pathway; the significance of OtsA in this species is unclear (see Wolf, et al., ). [Cellular processes, Adaptations to atypical conditions].	1.06903e-122
NZ_CP009459.1\|WP_039301341.1\|2428766_2429786_+\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381594	cd00254, LT-like, lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	6.76378e-09

>NZ_CP009459.1|WP_039301328.1|2419539_2420295_-|MerR-family-transcriptional-regulator
MALYSIGEVAALCNINPVTLRAWQRRYGLLKPKRSDGGHRLFDAADIERIREIQTWIEQGVQVSKVKGLLSGENREKEHAWGERQETLLRHLQSGNPNLLRAWIADIGRIYPAHTLVQHLYLPLRRRLYGQQIALCALLSLLDGALINYIAMCIATARKQNGRDALVVGWNVQDTTRLWMAAWIASQQGWRVDVLANSLSSLKPELFDRQTLLVWCGDCPGERQIDQIESWRSAGLPVFALGNIERRQTTE
>NZ_CP009459.1|WP_039291356.1|2418612_2419344_+|ABC-transporter-permease
MRLLRDPLLWLIALFAALLVLLPYTSGLFSWLFPQLTRPMYQQDSFVSLALAHLTLVGISSVVAVVIGVGLGILVTRPAGEEFRSLVETITAAGQTFPPVAVLAVAVPVMGFGQEPAIIALVIYGLLPILQGTLAGIGAVPESAREIALGIGMSRGQMLRKVELPLAAPVILAGIRTSVIINIGTATIASTVGANTLGSPIIIGLSGFNTAYVIQGAVLVALAAIVTDRLFERLESYVTRHAK
>NZ_CP009459.1|WP_039301325.1|2417684_2418629_+|ABC-transporter-ATP-binding-protein
MIEFDRVSKYFHGEAAVSDLTLNIREGQFTVLIGTSGSGKSTTLKMINRLVEHDEGRIRFAGEEIRSFDPKVLRRRMGYAIQSIGLFPHWTVAQNIATVPELLKWPKARVAERIDELLELLGLDAAQFRDRYPHQLSGGQQQRVGVARALAADPEVLLMDEPFGALDPVTRATLQQEMIRIHQLLGRTIVLVTHDIDEALTLADNIVLMDGGKVIQQGTPLELLTNPANDFVRDFFGRSELGVRLLSLRHVADSIRADERLEGEPIRADMTLREALSLFIDRQCEKLPVVDAQNQPCGVLHFSDLVRREHAPAT
>NZ_CP009459.1|WP_039301322.1|2416533_2417685_+|ABC-transporter-permease
MLKIHNRVLLLLVLLLAAALMLLPIINNAPNRLVSGEPLGFTQLPGTLHYWLVIPFLMLAGLTLAPARALTQLVIIATGELLFIGLLLLLGHTASQLALEGSSLARTSPGSGLWLMLAVCLLLCADAANRLTASPLWRLLLNLQVWLVPVALLATGYFSDLSLMKEYVNRQDVFDDALSRHLALLAGTLVPALLIGVPLGLLCYRRPAWQSGVFSLLNVIQTVPSVALFGLLIAPLAGLAAWLPWLGKIGVSGIGVAPALIALVLYALLPLVRGVVAGLQQVPRNIVESALGMGMSRAQIFWRAEVPLALPVLLRSLRVVCVQTIGMAVIAALIGAGGFGSIIFQGLLSSALDLVLLGVMPVIALAVIVDALFKLFISLLEAK
>NZ_CP009459.1|WP_039291353.1|2415503_2416415_+|ABC-transporter-substrate-binding-protein
MNISTRWGLAGLVMLAAGAQAAEPVKVGSKIDTEGSLLGNIILQVLESHDVKTVNKVQLGTTPVVRGAITSGELDIYPEYTGNGAFFFKTENDPAWKDAQKGYEKVKQLDYDKNHLVWLTPAPANNTYTIAVRKDLAEKNHLVSLADLSEYLKKGGTFKLAASAEFIERSDALPAFEKAYGFKLEQSQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLETLTDPKGVQAVSAPTAVVREAVLKEYPQIGDWLKPVFTSLDQKTLQQLNAKIAVEGQDAKKVAADYLKQKGFVK
>NZ_CP009459.1|WP_039301319.1|2413803_2415222_-|glutamine-synthetase
MNSLIHHSLVKNIFTLFAFPQASSSEGSVGQSARQKPAEERAKEFAEEVQRYLQRHPDTKHVDIYLNDVNGAFRGKRIAVDSLLSLSAGCYFPQSVYAMDHEGKPFSQASASVEYDEPDGLCLPVAGTLRPCAHDPKHNAQLLLTMKQSDGSGYALEPRVVLENVLQKFHYHGLYPVAAPEIEFYLVSKAQQDVPAQGCFYMPVPSDYTAFIEALEQAAADQKLPLSGIVCEAEAGQFELNLKHGKDIVGVCESVLALRRLTSIVADKFGYQANFMAKPFSHLAGNGLHFHISLNDRKGDNVFASPAENLNEMTQLCLAGMLQTMPAAVAVIAPHVNSFRRLRKNLNEPLFSSWGYNKRSAALRIPCSDDSNRRIEYRLAGADVNPYLAMAAILTGMLYGLENIDSDTLKNSALFAPELPLFQHVAIAEFQQSHYMTESLGEAFSRQWVTHKLSELAWFETIVTQEEAVLSR
>NZ_CP009459.1|WP_039301316.1|2412339_2413761_-|trehalose-6-phosphate-synthase
MSRLIMLSNRCEPERGQRGDPLLPVLHAVLKKHSGLWFGWNGEIAAGNKQRKERFFSQSGYQQYSWALTPNEYDNFYQGYIHQVLWPVFHNRPDLIHYKKEYFTTWKNYNYDVKARVAAKIEPDDLVWVQDYHLLFTGKMLKEDGYTNRCGFFLHQPFPPGDVLRSVPEHDSLMQALFSYDLLGFQSSGDVNNFLAYALRFYRVERLADNLIQLNGHIIRLGIFPCGVDKTLPPLSHTNAEAVRNYPRQIVISNDTISDISGVHCHLNTMETFLSSHPEYLRDVSLLQISDASRGYSWSARDLCDQLEHQCADINARFGDSGWYPINYIRNHLCHSDLIYAFYRNAHVAMFTPLSEGMSLEAKAFVLAQDAEDPGVLMLSALTGTAEQLTDAVLINPYDANEASHALYSALTMPLHERKRRHQQLLAKVERYDSQWWARAFLDSLNAESAPAPATVIPFRASHHGIFTPQNLY
>NZ_CP009459.1|WP_039301314.1|2410210_2410777_+|YceI-family-protein
MLRIFLKIILGLSFSPWLYAAPESYSVLTPQTAIELSWRAFGGTSQAHLEGVTGSLLLDAGNDMHDSISVHIPVATLQASNSLLTYQLQGGLFFDTAHYPMLTFTSTRVVAQGNGRYRIFGIVQVKNVQRPVVLEASLDHAPALTSGPSALSLRATTVISRAAFNMDKFEAVVDDSVAIEIRIRARVG
>NZ_CP009459.1|WP_039301312.1|2409068_2409932_-|hydroxyquinol-1,2-dioxygenase
MLNINDKNITQEVLSRISIPPDDRMHTIFTGLIEHLHSFARDVQLTEQEWEKGIEFLTQVGKYCSPERQEFILLSDVLGLSSLVIAQNNRKPAGCTESTVFGPFHVAEAPQLAPGDDFSQGAPGTPWFVTGKVTGIGGEAVANATIDIWHADGDGQYDVQASDVHGLRCRGVLKADSQGEFFFRTVVPEAYEIPSDGPVGSLLAAQGRAAWRPAHLHFMINAEGYQRLITHVFNKEDEYLNSDSVFGVRASLIADWVEHAPGIAPDGTFCPQSFCTLDFNFVLNPAS
>NZ_CP009459.1|WP_039301310.1|2407736_2409020_-|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase
MSNRANIPDLTSDLPRWLAYIDSLHSQVIDMGLDRIKDVAAKLNVLKPAPFVFLVGGTNGKGTTCHTLEKVLMLSGHKVGIFSSPHMIHYKETVRIQGQELSDAAHISAFVEIEKAREATTLTPFEFNTLGAFCLMKWAQVDVAIIEVGMGGRDDATNILTPDVSVITNVALDHEDWLGKGTEAIGEIKAGIFRPGRPAVIGQVQAPASLLRYAAQIGAISHQRGTNWQVIDRGDTWSFSDSFGEIAPLSQPKMPRDNVATAVAALRVSGLKFDLTALDEVIDKANLPGRFQVINHQPAVILDVAHNPHAAAYLAERLRNFPTKGKYLFVFGMLINKDIKGTVEQLKELAGEWYCCGIQAGPRSSTAEDIAQYLPQAKCFPDILSGWEAARDDASADDAIVVCGSFYSVAPVLNELNLGTENNQGIR
>NZ_CP009459.1|WP_039301331.1|2420693_2421815_-|cupin-domain-containing-protein
MDYQLNFNWPEFMETYWQKKPVVLKNALPDFVDPITPDELAGLAMENEVDSRLVSFKEGKWHASNGPFEHFDNLGETGWSLLAQAVNHWHEPAAALVRPFRVLPDWRLDDLMISFSVPGGGVGPHIDNYDVFIIQGMGSRRWRVGDKLPLKQFCPHPALLHVEPFTPIIDEDLAPGDILYIPPGFPHDGFTHETALNYSVGFRGPNSRDLISSFADYVLENDLGGDHYSDPDLTCRANPGKVENYELERLRSMMTALISQPEAFNQWFGSFVTTPRHELDIASAEPPYEPAEVAAALAGGEELIRLSGLRVLQVGEGFFVNSEPLDVSHQAAAVAMCRYTRLTKTELGAAVEDDEFIRQLTALINQGYWYFED
>NZ_CP009459.1|WP_039306108.1|2422325_2427596_+|AvrE-family-type-3-secretion-system-effector
MFSRFLGRHRGGQEAAQITIPVTASASRASSPSLYSQASANASRATSPSLYSQPSASSASVYSQPDVSDPNAIPSNEVGTPDSHFAELPPEIEPEKNMLLETRLSLDKKGRLEIDTPATSAPLHALMEKTIGHDRLRYQNHLASDDGHQHVLLDKEGRLMTLRSQPGAFIALSHSQQKVEWREVPQHHRGFMRRQSLEPAGQHLSWHDRQTVEIGGEKVRLPETGIRDRLTDSVTDGDGTRYRLHDKKLYSFDSAANAWQSLSGEDDKLSSLSRQSDGMLWRVNDDKQLGSAVGDTIKVNFEHKIDHYAVGPKRDALVLLSDDEKKPQVAYVANLAATDPQPKMLTLPENMTLKKTALHGPLLFALDNNGRLHCGDKPDEQSTALTFGDARHKPLLDNITQYVTATVEDGARIEDMLADETDRLHLIVKDKYDQKHAITFHWHGGDLKPQSSWNLSDSLVLDYQKGLPQVTPAAHDVVDLGRLGKLALHDGKVHYFNETTGLWAASDEKADKLQCGLDGQPWLMKDGELKRLKVNLSSNKVDHGSNVFALPQVTKSVSADLATAGLDKAEKAQAFTAIDSRRYLAVNEKGDIGFHHIDTTTRRNQRATQTLSQSTLKEQIEKLVPGSAGKEDAAKVSDLALGEDKQLWLLSKEGSLFSLPENGWNSGKADGLAKATLPANEDGSQPELTALQTSAKGQVSAVDTQGNTFVFKAGAWEKGDPVTAPVAEPNMATQNYERLTKASKDWRLPGTGITFKREVNFLGQTGQDGKQVRTSFRTRLSTFVFRPSLEWPRPIKTAAYSIQHRYAGREGLKDVYQQQGDLTQRLKALSQQPGRAAPRPGLSQRLEIMSGETARQWQPQEKALLEEMSSFARQLSDSSTHYCEQIGQHYGVRDERRQEATPSRFGLNHSQSGALNPSSSRQDNLTGQLNELLRRYPADKSNHAGAIIAELEARKITLNHQKEQVPMGRQRDIHDDIGLVKSRVMLDVLALKSLHDSVDDLQQASLLSEPQRSAKMTEIAANVARLRDSEWGGNVIKTVTTQGFGNHKSLEANYDAIKAMTKAFSKENHGVNINTKTVMQAENQREMQDKMVSTVLSLESGENLAFSRTYGASATATVAPGTQVVAGVGGKVGADRGYTMSFSRGDTGINVSFGRTGAVSATGIVGVGYNVLTDYNKTHKVYLDGDHKHPLSQGVRLGGGVTLGGQLQSQHGVSFELAEHEIPGFIEQLSSGTLDPLEFLNRGANHSVKSGATQSFSVDINAAALASVGFPFTDSHEKDFPTSARLGGGVYANTNLLAGSRERTDSRNAEGQGVSHSDHRLRAFNQMNAGANIAIPVSTTIQPKHKDPFSVGVGVGASVQLSINNRTTHSLTVDLKNAQPVEGVHLEKLMTTLGKQFTDSASTQLLARLKEEPKEGELPISVADKLSQLDAHFTRWYSPADNAKTRRPLLDTLQQLTARQQQADSLSVQNTQPEPTNAEVDALIAGLRGEFTDLTSRQLLDELTPTEGAPRLPMSAGERLGKLETHFARFIPPSRHHELTGNGPQAALQSLQQTVRQQNAVLNQQQLVNKAEYQSTYKNLSRIDNNGLFHFMRHFMEGEMSPSNADRITEMMGEDYRLKALLRGLQDNSSSQAVVSLELKTKPREKLADQWANHAVTQDSIVDLLKDRDKLRLKSIAFTKTQTKSDGFSTPSFLLGGANGVSLSMNENLGTINFSYGDDDSAPLSYTVDGGVAQAEKEVKSALKDAAEAGFMVKGG
>NZ_CP009459.1|WP_039301334.1|2427600_2428026_+|DspF/AvrF-protein
MTMQQQLKQWLDAWGKQHKISLRLEEGVCLLTDAQQQEAAVIELPPESSAVVLHCRVGELTGQDTALLPNLLAMNFEMNAMRGCWLALDGANAIRLCTQCEMFALDAERFAGWLNAFISQSGEVRAFITELPSLLETATPR
>NZ_CP009459.1|WP_039301337.1|2428066_2428567_-|lytic-transglycosylase-domain-containing-protein
MQTKQWRWGLLLLSLPALAQAECFTRVGHAFGIAPALLEAIAWKESKFSLSSVNAANSNHTEDVCMMQVNSVHFGRLKQLGVTRDNLLRDPCTCIATGAWVLHGLFRQYGRSWNTVGMYNTGPSEKRHQLRQRYADDVQRIYKILQKQQPARREEDLFASNEAANQ
>NZ_CP009459.1|WP_039301341.1|2428766_2429786_+|lytic-transglycosylase-domain-containing-protein
MQISSGPGGFSPLLPENHFPGLDGASPDSQNGSNSITAKLLLNNGGNTLAIPLALNFANTGAADKPSAINFGDSPASNNSPATNPANASSSSGSGSADSMMQELQQMLQQFLKELMQLFHMNTGQSKGDDDSSSPASGIGSGSGSGMDSGSSDGAGDAGRPLNNLAAAPSGGPSGASGPSADSLPPGDTSLKTSDPTLQKIVSQFGGEYEKASAETGVPAKLLAALTMQESGGDVNAKSTNPGNGLTDSGMNQINPDTYRAMQSKYPDKLGSDMNSPANQIMCSALMLKEGKEKFGSYDAALRAYNSGDDQVNLHNLSSVSLGDPNYVNEVNSHMAKFA
>NZ_CP009459.1|WP_039301344.1|2430592_2431567_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MKENSSNHWEIKHIPVDIDLNMPRSAAALPASENVHDGLDIWLQTLAPLKVDLVLEGETGTGKDTFARRIYDHSGCRGAFVPINCAAIPETLAESELFGVMAGAYTGATHSRAGYIESANNGVLFLDEIDSMSLSLQAKLLRVLETRTVGRLGSTQSISLNLRVIVASQKPLAQLMEQKLFRQDLFFRLTTVKISLPALRERVECIIPLFRRFAQESAIRLNRPMPAMPQHLSEALLMHRWPGNIRELKGAAERFVLGLPALGQVAHPEMRSVRLRERLRRIEYSLIEDCLSRHENRVVSAAHELGIPRRTLYQRIKSLTEKEN
>NZ_CP009459.1|WP_008460970.1|2431662_2431872_+|hypothetical-protein
MASVNTGNNAGASSSLADSFQSQMDSIENKSMQDSLDKAERDRKNAYVSGYQNSATTMISSLAQNKISF
>NZ_CP009459.1|WP_039291373.1|2431937_2432351_+|type-III-secretion-system-protein
MHILNPATGMPLPEPESLGVASNPATQSSIPFGNNVANQSDAAFFSAALQQPEAASAMGGVGGKPAAMFEKASGMFKQMEGDQKQMNNVLRKAARSTDPLVLNQVDDQLSNYYLESMMNAKIVSKSISGLDKLTNLQ
>NZ_CP009459.1|WP_039301347.1|2432357_2433158_+|EscJ/YscJ/HrcJ-family-type-III-secretion-inner-membrane-ring-protein
MQRRWRKILQPWLLVLLLAGCDSQVILNTGLTENDANDIISELSKYKIEADKQIDKTGVTVLVAQDNIERSVRILNANGLPHKARTNLGEVFQKNGIISSPLEERARYIYALSQELESTLSQIDGVVVARVNVVLPERVAPGEPVQPASASVFIKYTPEMDPDSIEPRIRRLVAASIPGLSGKNDGALSVVFVPAAAYHDRVELVTLGPFQLTLSQYATVRTLFFSLMGLLLLLGGIFTLLPKLRAMKRGKNSGSTELAVVPSERR
>NZ_CP009459.1|WP_039301350.1|2433163_2433778_+|hypothetical-protein
MVARDNALAANWLRWWQEGFWRQADASWFGLPWFSLDEARRQSLMLKSPQAVPAMLALEDTLPDTPDARLLALVSLDLAQRETLFALVAEVCQRGSGAGQLAESQRIWCERLTRGLRPGVWLPASLSFSEEPNIAVLCLLRPILTPVAWQRLRFSFPQPVIARCEAWQADEPAPLNRLQALWDGAIWQAQRSAMPALNDFSREQ

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Crispr_ID: NZ_CP009459_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009459_3

2932519-2932655

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009459_3

>merge|NZ_CP009459|3|2932519-2932655|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCACTGATATATTTGAAAATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP009459|3|3|2932519-2932655|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCACTGATATATTTGAAAATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009459.1\|WP_052045584.1\|2929725_2930649_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP009459.1\|WP_039302331.1\|2924901_2925900_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|182294
NZ_CP009459.1\|WP_039302346.1\|2935129_2936521_-\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NZ_CP009459.1\|WP_096754119.1\|2932150_2932291_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009459.1\|WP_039302343.1\|2934427_2935072_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP009459.1\|WP_008456504.1\|2925966_2926203_-\|major-outer-membrane-lipoprotein	unknown	unknown	gnl\|CDD\|185294
NZ_CP009459.1\|WP_039302360.1\|2942860_2943709_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_CP009459.1\|WP_039302351.1\|2938192_2939395_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP009459.1\|WP_039302325.1\|2921866_2923147_+\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|236804
NZ_CP009459.1\|WP_039302357.1\|2941942_2942524_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP009459.1\|WP_008456477.1\|2941762_2941852_+\|YnhF-family-membrane-protein	unknown	unknown	unknown
NZ_CP009459.1\|WP_039302354.1\|2939509_2940448_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP009459.1\|WP_039302327.1\|2923143_2924364_+\|cysteine-desulfurase-SufS	unknown	unknown	gnl\|CDD\|181766
NZ_CP009459.1\|WP_039302349.1\|2936747_2937896_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP009459.1\|WP_039292484.1\|2940444_2941470_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP009459.1\|WP_039302340.1\|2932816_2934190_-\|MdtK-family-multidrug-efflux-MATE-transporter	unknown	unknown	gnl\|CDD\|234981
NZ_CP009459.1\|WP_039302336.1\|2930721_2931654_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369561
NZ_CP009459.1\|WP_039302329.1\|2924375_2924792_+\|cysteine-desulfuration-protein-SufE	unknown	unknown	gnl\|CDD\|181767
NZ_CP009459.1\|WP_039302333.1\|2926511_2927924_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP009459.1\|WP_039306188.1\|2928588_2929689_+\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|223727

Protein	Function_ID	Function_description	E-value
NZ_CP009459.1\|WP_052045584.1\|2929725_2930649_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.88743e-74
NZ_CP009459.1\|WP_039302331.1\|2924901_2925900_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|182294	PRK10190, PRK10190, L,D-transpeptidase; Provisional.	2.61772e-85
NZ_CP009459.1\|WP_039302346.1\|2935129_2936521_-\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
NZ_CP009459.1\|WP_039302351.1\|2938192_2939395_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP009459.1\|WP_039302343.1\|2934427_2935072_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	1.00665e-123
NZ_CP009459.1\|WP_008456504.1\|2925966_2926203_-\|major-outer-membrane-lipoprotein	gnl\|CDD\|185294	PRK15396, PRK15396, major outer membrane lipoprotein.	6.55333e-38
NZ_CP009459.1\|WP_039302360.1\|2942860_2943709_-\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	9.76152e-44
NZ_CP009459.1\|WP_039302325.1\|2921866_2923147_+\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|236804	PRK10948, PRK10948, Fe-S cluster assembly protein SufD.	0
NZ_CP009459.1\|WP_039302357.1\|2941942_2942524_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	6.98082e-131
NZ_CP009459.1\|WP_039302354.1\|2939509_2940448_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP009459.1\|WP_039302327.1\|2923143_2924364_+\|cysteine-desulfurase-SufS	gnl\|CDD\|181766	PRK09295, PRK09295, cysteine desulfurase SufS.	0
NZ_CP009459.1\|WP_039302349.1\|2936747_2937896_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP009459.1\|WP_039292484.1\|2940444_2941470_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP009459.1\|WP_039302340.1\|2932816_2934190_-\|MdtK-family-multidrug-efflux-MATE-transporter	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP009459.1\|WP_039302336.1\|2930721_2931654_+\|alpha/beta-hydrolase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	2.99345e-56
NZ_CP009459.1\|WP_039302329.1\|2924375_2924792_+\|cysteine-desulfuration-protein-SufE	gnl\|CDD\|181767	PRK09296, PRK09296, cysteine desulfuration protein SufE.	7.18409e-100
NZ_CP009459.1\|WP_039302333.1\|2926511_2927924_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP009459.1\|WP_039306188.1\|2928588_2929689_+\|FAD-dependent-monooxygenase	gnl\|CDD\|223727	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion].	4.67945e-33

>NZ_CP009459.1|WP_096754119.1|2932150_2932291_-|hypothetical-protein
MEIDLDNLVFSGLDEAEARNAERQEDADKKAQAVVADDDCGDACKI
>NZ_CP009459.1|WP_039302336.1|2930721_2931654_+|alpha/beta-hydrolase
MLPDNAQAALKGWIKAAGPVVKKVYGQSDADWKEVRADYVRQLDELFPAVEGATFADVSLGGIGAMLVTPAEVIEGRVMIYIHGGGYVHGGVEAYRGLTGRYARALKAKVYAVDYRQAPEFPFPTPIDDVFQAYRALLEEGANPRSLMISGDSAGGAMVVTLMRKARDAGLALPAAAVAISPWANLTHSGTSAMVRDGLDPLCSVAFLNQLARSFLAGELPTHPDASPVFADVQGLSPTLIQVGENEVMLSDAIRLASHMSESRVRTTLEVWPEMFHVWHLFAGILPEADQALRNAIRFFEDALNPANIG
>NZ_CP009459.1|WP_052045584.1|2929725_2930649_-|LysR-family-transcriptional-regulator
MPLHPGTKNHSDLDLGSLRVFVAIAESGSFVAGGKALGLTRSAAGKAIARLEAQLETRLFNRTTRSVALTRDGYGFYERCAQILQDIEEAEASVRQNFSSPSGVLRLSVPETWGKVVLLPFLKDIMAAYPRLDIEVNFTDRVVDLVAEGVDLSLRLGDLPKDSQLIARTVQHIRPHLFASPDYLASSGMPGSPEDLHLHQRLIYGLSPQTTNWTLFTASNESVVIEGHSRIRFDSGEAICAAAVAGLGIAFLPAFLVARHVAEGTLVPVLPELGGTPLSVNVVYPNRKNLAAKVRLFIDSLVKHMDH
>NZ_CP009459.1|WP_039306188.1|2928588_2929689_+|FAD-dependent-monooxygenase
MITIIGAGVAGPLLAYMLHRQGIAVCILEADASLDSRHQGGMLNLNEGTGKPALRAAGLYEAAMALVLEGADATLMRDKNGHILYQDEGDGSRPEVDRGALRKLVVEALPEGIISWNSRVTSIEPKGTGFHLKLDDGSTHICDALVGADGAWSKVRPLLTAQKPLYSGITFVELRYPNVSQQYPAVKALVDKGSLFALSEGRGIMAHCEPGDEISAYAAIPVPEAQSRRTFTRDELAEHYRDWGECYREMLVNSEGPLVARPIYVLPTGEFWEAEGNVTLIGDAAHVMSPFAGEGVNLAMADAVDLAHAIISQPSSLEDAFKVYQEAMAARTVRFQQESAANFAMGFAADAPRELMALFTGLGSQD
>NZ_CP009459.1|WP_039302333.1|2926511_2927924_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLTKMLDAGMNVMRLNFSHGDYEEHGQRIKNLRNVVAKTGKKAAILLDTKGPEIRTIKLEGGNDVSLKAGQTFTFTTDKSVVGNSEIVAVTYEGFTNDLTVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQAVDFVAASFIRKRSDVVEIREHLKAHGGEKIQIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCVRARKVVITATQMLDSMIKNPRPTRAEAGDVANAIIDGTDAVMLSGESAKGKYPLEAVTIMATICERTDRVMTSRLDNSNDSRKLRITEAVCRGAVETAEKLEAPLIVVATQGGKSAKAVRKYFPNATILALTTNEVTARQLVLSKGVVTQMVKEIASTDDFYRLGKEVALESGLARKGDIVVMVSGALVPSGTTNTASVHVL
>NZ_CP009459.1|WP_008456504.1|2925966_2926203_-|major-outer-membrane-lipoprotein
MNRTKLVLGAVILASTMLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAVRSDVQAAKDDAARANQRLDNQAHSYRK
>NZ_CP009459.1|WP_039302331.1|2924901_2925900_+|L,D-transpeptidase-family-protein
MKYASLLTLAIIGALSAIQPALALDYPLPPEGSRLIGQNQTYTVQEGDRNLQAIARRFDTGAMLLLEANNTIAPVPKPGTVLTIPSQLLLPDVPREGIVVNLAELRLYYFPPGQNIVQVYPIGIGLQGLETPLMTTRIGQKIPNPTWTPTAGIRQRSLEKGIKLPPVVPAGPNNPLGRFAMRLAYGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIKALFEQTRTGTTVRVINDPVKFSVEPNGVRYVEVHRPLSQDEQQNTQTMPYALPAGFSEFRAASGVEKALVEKALYRRAGYPVVVSAGQTPAATIGGQSARNGVVNAEEATSATQ
>NZ_CP009459.1|WP_039302329.1|2924375_2924792_+|cysteine-desulfuration-protein-SufE
MATLPDKDKLLKNFSRCANWEEKYLYIIELGSRLPELAAEQHKSEHIIQGCQSQVWIVMHQQPDGVITLEGDSDAAIVKGLIAIVFILYQQMTPQDIVAFDVRPWFEKMALAQHLTPSRSQGLEAMIRAIRNQATNLI
>NZ_CP009459.1|WP_039302327.1|2923143_2924364_+|cysteine-desulfurase-SufS
MSFSIEQVRADFPILSREVNGQPLAYLDSAASAQKPQVVIDAELEFYRNGYAAVHRGIHTLSAEATTLMENVRSQAARFVNAAKPEEIVFVRGTTEGINLVANSWGNANVQAGDNIIISAMEHHANIVPWQMLCERTGAELRVIPLNQDGTLQLEVFPTLIDERTKLLAIAHVSNVLGTENPVKEMIAIAHQAGVKVLVDGAQAVMHHATDMAALDCDFYLFSGHKIYGPTGIGVLYVKENILQDMPPWEGGGSMIATVSLTAGTTYAAAPWRFEAGTPNTAGIIGLGAALSYVEGLGMEAIGEYERNLMRYAQNALQAVPDLTVYGPAERRGVLAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAFYSVPAMCRASFAMYNTEREVDRLVAGLQRIHSLLG
>NZ_CP009459.1|WP_039302325.1|2921866_2923147_+|Fe-S-cluster-assembly-protein-SufD
MAGLPNSSNGNALQQWHHLFESQGTGRSQVAQQHMQQLLRLGLPTRKHENWKYTPLDGLLNNQFVFAPQSPLSAQQRDELALPVNALRLVFVDGRFSAELSDDLADSGFVISIDDNRQTLPAPVQGEVFLHLTESLAETVTHIRVARNTQPEKALLLMHVTRGSAAQEMTTAHYRHHLILEQGAQATVIEHFVSLDEAAHFTGARFTAEVAANAQLSHYKLAFENAASYHFAHNDLLIEQDSTVSSHSFLLGAAVLRHNTSTQLNGENNQLHINSLALPVNNEVCDTRTWLEHNKGYCNSRQLHKTIVRDKGRAVFNGMIKVAQHAIKTDGQMTNNNLLLGRLAEVDTKPQLEIYADDVKCSHGATIGRIDDEQMFYLRSRGISEQAAQQMIIFAFVAELTESIRDEALKQQVLARIARRFAGGEA
>NZ_CP009459.1|WP_039302340.1|2932816_2934190_-|MdtK-family-multidrug-efflux-MATE-transporter
MQKYLTEARQLLALAIPVIIAQVAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPTVAQLNGSARRDRIAHQVRQGFWLAGMVSVLVMVVLWNAGHIIHAMHNIDPELADKAVRYLRALLWGAPGYLFFQVGRNQCEGLAKTKPGMVMGFIGLLVNIPVNYVFIYGHFGMPELGGVGCGVATAAVYWVMFFSMLSYMKKARSMRDIKNPEGFSKPDWAVVKRLSQLGLPIALALFFEVTLFAVVALLVSPLGITDVAGHQIALNFSSLMFVLPLSLGAAVTIRVGFRLGQGSTLDAQIAARTGVGVAICLAMCTAMFTVIFREHIALLYNDNPAVVALAAHLMLLAAIYQISDSIQVIGSGVLRGYKDTRSIFFITFIAYWVLGLPGGYILGLTDWVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRWLQRQPSVTILQRAAR
>NZ_CP009459.1|WP_039302343.1|2934427_2935072_+|riboflavin-synthase
MFTGIVQGTATLVSIDEKPNFRTHVIDMPTEMLPDLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGELSVGDSVNVERAAKFNDEIGGHLMSGHIMTTAEISKILTSENNRQIWFKIQDKTLMKYILYKGYVGIDGISLTVGEVTATRFCVHLIPETLERTTLGAKKLGQRVNIEIDPQTQAIVDTVERVLASREAAMAAALPAGE
>NZ_CP009459.1|WP_039302346.1|2935129_2936521_-|glycoside-hydrolase-family-1-protein
MKYAFPEHFWWGSAASGPQTEGEALNFGKSETIWDRWFAEQPNRFHHGVGPQNTSTFYQRWKQDIALLKKLNHNTFRTSISWARLIPDGTGEVNPLAVEFYNQVIDELLAQGIKPFINLYHFDMPMVMQEKGGWESREVVDAYAAYANTCFELFGDRVKHWFTFNEPVVPVECGYLYDYHYPNVVDFNRAVTVAYHTMIAHAKAVKAYHARNDDGQIGIILNLTPSYPRSQNPADVKAANLADLMFNRSFLDPALRGEYPADLVAFLKEHDKLPACQPEDKALLAAGVVDLLGINYYQPRRIKCRDTLVNPESPFMPEWFFESYEMPGRKMNPYRGWEIYERGIYDILTNLRENYGNPACYISENGMGVENEQRFIDNGQINDDYRIDFVRDHLKWLHKGISEGSNCLGYHMWTFIDNWSWCNAYKNRYGFVSLDLNTQQRTIKKSGEWFMKTAAENGFNEED
>NZ_CP009459.1|WP_039302349.1|2936747_2937896_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVRDNEWYRIANEMLSRAGITLNGPNPFDIQVKNPNFFKRVLQEGSLGLGESYMDGWWECERLDIFFTKVLRAGLENQLPHHFKDTLRIAAARLVNLQSKKRAWIVGKEHYDLGNDLFSRMLDKHMQYSCGYWKDATNLSDAQDAKLKMICEKLQLKPGMKLLDIGCGWGGLAEFAARNYAVSVFGVTISAEQQKMAQERCKGLDVTILLQDYRDLNEQFDRIVSVGMFEHVGPKNYATYFDVADRNLKPDGIFLLHTIGSKRTDNNVDPWINKYIFPNGCLPSVRQIADASEPHFVMEDWHNFGADYDKTLMAWYERFLATWPEIEGNYSERFKRMFSYYLNACAGAFRARDIQLWQVVFSRGIEHGLRVPR
>NZ_CP009459.1|WP_039302351.1|2938192_2939395_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPSKGFLIWLAGLSVLGFLATDMYLPAFAAIQQDLGTTASAVSASLSLFLAGFAFAQLMWGPLSDRFGRKPVLLIGLAMFAAGCIGMLWVQDATTLLVLRFIQAVGVCSAAVSWQALVTDYYPANRAGRIFATIMPLVGLSPALAPLLGSWLLNHFEWQAIFAVLFVVALLLMIPTLRLKPRTQHHEQTEDNKVSFFSLLRSRVYGGNVLIYAACSASFFAWLTGSPFILNEMGYSPAAIGLSYMPQTVAFLVGGYGCRSALQKWSGKQLLPWLLALYALSVVATWGVAVSGHADLTLLLIPFCVMAAANGAIYPIVVASALLPFPQATGKAAALQNTLQLGLCFLASLMVSWLVTTPLLTTTSVMLATILLAGLGYALQHTAQREAQNKGHSELSRAQ
>NZ_CP009459.1|WP_039302354.1|2939509_2940448_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSGAAQELHRVPSAISYTVRQLEEWLAVPLFERRHRDVELTAAGAFFLKEGRSVIKKMMATRQQCQQIANGWRGHLSIAVDNIVKPERTRQLVLDFYRHFPDIELRVSQEVFNGVWDALADGRVEAAIGATQAIPVGGRYAFRDMGALSWRCVVSAGHPLAQREGIILDDDIRPWPSLVLEDTSRSLPKRITWLLDNQRRVVVPDWASGEDCLTAGLCIGMVPTHIAQPWLVRGDWKELLLENPFPDAACCLTWRQDDASPALSWLLDYLGDSETMNQEWLQEPGNVFPAPEEA
>NZ_CP009459.1|WP_039292484.1|2940444_2941470_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAPYFAEIIESVENSCFAKGYTLILGNAHNNFEKQRAYLSMMAQKRVDGLLVMCSEYPDTLLSTLEEYRHIPMVVMDWGEARADFTDSVVDNAFHGGYLAGRYLIERGHRDIGAIPGQLERNTGGGRHAGFLKALEEANIKVPDNWVVQGDFEPESGYRAMQQLLNQPHRPTAVFCGGDIMAMGAICAADEMGLRVPQDISIIGYDNVRNARYFSPALTTIHQPKERLGETAFNMLLDRIINKREESQTIEVHPRLIERRSVADGPFRDYRR
>NZ_CP009459.1|WP_008456477.1|2941762_2941852_+|YnhF-family-membrane-protein
MSTDLKFSVVTTVIVLSLIVAGALTAVLH
>NZ_CP009459.1|WP_039302357.1|2941942_2942524_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGSPFEGKTLEEIVRGSDGGIFNNAAQVWNHTFYWHCLAPNAGGEPTGDVLAAINHTFGSVEAFKKQFTEAAIKNFGSGWTWLVKNSDGSLAIVSTSNAGTPLTTEAKPLLTVDVWEHAYYIDYRNARPVYLDHFWALVNWKFVAQNLAG
>NZ_CP009459.1|WP_039302360.1|2942860_2943709_-|C40-family-peptidase
MARINKISITLCALLFALPYTPLAQASEHVRHPVAQKGHPAKTTTSKSNKGKEKAKPKVSTASTKKKSGKKDTSPAKAKVAKRTTTGKSSTLAKTSSKKTSQKLALQPASATVAYTEKCTHRKGHKKQCVKVKSEKNLTIAQAHKVRVQKAQKTAMNKLMGQIGKPYRWGGTSPRTGFDCSGLIYYAYKDLVNIRIPRTANEMYHLRDASSVDRGELESGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRSGRDIQITSLSEDYWQRHYVGARRVMTPKTIR

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Crispr_ID: NZ_CP009459_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009459_4

3131102-3131177

Orphan

Consensus_repeat	Method
AGAATATTGTTTATCCTCTCTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009459_4

>merge|NZ_CP009459|4|3131102-3131177|CRISPRCasFinder
AGAATATTGTTTATCCTCTCTCCTCATAGGGGCGAGAGAGAAAGCGGACTTGAAGAATATTGTTTATCCCCTCTCC

>NZ_CP009459|4|4|3131102-3131177|CRISPRCasFinder
AGAATATTGTTTATCCTCTCTCC	TCATAGGGGCGAGAGAGAAAGCGGACTTGA
AGAATATTGTTTATCCCCTCTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009459.1\|WP_039302794.1\|3143263_3144811_+\|type-VI-secretion-system-contractile-sheath-large-subunit	unknown	unknown	gnl\|CDD\|226048
NZ_CP009459.1\|WP_039302752.1\|3122205_3123060_-\|tagatose-bisphosphate-family-class-II-aldolase	unknown	unknown	gnl\|CDD\|183710
NZ_CP009459.1\|WP_039302770.1\|3129510_3130437_+\|phenylacetic-acid-degradation-operon-negative-regulatory-protein-PaaX	unknown	unknown	gnl\|CDD\|274064
NZ_CP009459.1\|WP_039302763.1\|3127288_3128107_+\|DUF2861-family-protein	unknown	unknown	gnl\|CDD\|371360
NZ_CP009459.1\|WP_008459208.1\|3131226_3131832_-\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|234675
NZ_CP009459.1\|WP_052045591.1\|3125173_3126643_+\|DUF3404-domain-containing-protein	unknown	unknown	gnl\|CDD\|371781
NZ_CP009459.1\|WP_039302788.1\|3140483_3142133_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NZ_CP009459.1\|WP_039302785.1\|3140125_3140377_+\|HTH-domain-containing-protein	unknown	unknown	gnl\|CDD\|225253
NZ_CP009459.1\|WP_039302798.1\|3144832_3146173_+\|type-VI-secretion-system-baseplate-subunit-TssK	unknown	unknown	gnl\|CDD\|377569
NZ_CP009459.1\|WP_039302779.1\|3136702_3139000_-\|FdhF/YdeP-family-oxidoreductase	unknown	unknown	gnl\|CDD\|239168
NZ_CP009459.1\|WP_039302766.1\|3128196_3129384_+\|cellulase-family-glycosylhydrolase	unknown	unknown	gnl\|CDD\|365907
NZ_CP009459.1\|WP_008459210.1\|3130451_3131048_+\|phenylacetic-acid-degradation-protein-PaaY	unknown	unknown	gnl\|CDD\|131340
NZ_CP009459.1\|WP_039302774.1\|3132045_3135945_+\|ATP-dependent-RNA-helicase-HrpA	unknown	unknown	gnl\|CDD\|182986
NZ_CP009459.1\|WP_039302782.1\|3139186_3139729_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|173926
NZ_CP009459.1\|WP_039302791.1\|3142733_3143231_+\|type-VI-secretion-system-contractile-sheath-small-subunit	unknown	unknown	gnl\|CDD\|377529
NZ_CP009459.1\|WP_039302749.1\|3121266_3122181_-\|1-phosphofructokinase	unknown	unknown	gnl\|CDD\|274804
NZ_CP009459.1\|WP_039302776.1\|3135978_3136635_-\|O-methyltransferase	unknown	unknown	gnl\|CDD\|226607
NZ_CP009459.1\|WP_039302757.1\|3124217_3125171_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|238571
NZ_CP009459.1\|WP_039302760.1\|3126629_3127292_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP009459.1\|WP_039302755.1\|3123376_3124207_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268

Protein	Function_ID	Function_description	E-value
NZ_CP009459.1\|WP_039302794.1\|3143263_3144811_+\|type-VI-secretion-system-contractile-sheath-large-subunit	gnl\|CDD\|226048	COG3517, COG3517, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	0
NZ_CP009459.1\|WP_039302752.1\|3122205_3123060_-\|tagatose-bisphosphate-family-class-II-aldolase	gnl\|CDD\|183710	PRK12737, gatY, tagatose-bisphosphate aldolase subunit GatY.	0
NZ_CP009459.1\|WP_039302770.1\|3129510_3130437_+\|phenylacetic-acid-degradation-operon-negative-regulatory-protein-PaaX	gnl\|CDD\|274064	TIGR02277, Transcriptional_repressor_PaaX, phenylacetic acid degradation operon negative regulatory protein PaaX. This transcriptional regulator is always found in association with operons believed to be involved in the degradation of phenylacetic acid. The gene product has been shown to bind to the promoter sites and repress their transcription. [Regulatory functions, DNA interactions].	1.89843e-122
NZ_CP009459.1\|WP_039302763.1\|3127288_3128107_+\|DUF2861-family-protein	gnl\|CDD\|371360	pfam11060, DUF2861, Protein of unknown function (DUF2861). This bacterial family of proteins has no known function.	1.77218e-35
NZ_CP009459.1\|WP_008459208.1\|3131226_3131832_-\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|234675	PRK00170, PRK00170, azoreductase; Reviewed.	1.27064e-128
NZ_CP009459.1\|WP_052045591.1\|3125173_3126643_+\|DUF3404-domain-containing-protein	gnl\|CDD\|371781	pfam11884, DUF3404, Domain of unknown function (DUF3404). This domain is functionally uncharacterized. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with pfam02518, pfam00512.	3.29687e-34
NZ_CP009459.1\|WP_039302788.1\|3140483_3142133_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	2.75597e-108
NZ_CP009459.1\|WP_039302785.1\|3140125_3140377_+\|HTH-domain-containing-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	3.82833e-06
NZ_CP009459.1\|WP_039302798.1\|3144832_3146173_+\|type-VI-secretion-system-baseplate-subunit-TssK	gnl\|CDD\|377569	pfam05936, T6SS_VasE, Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE. T6SS_VasE is a family of of bacterial proteins that are essential for the type VI pathogenic secretion system, although the exact function of this particular component of the system is still not known.	1.0563e-156
NZ_CP009459.1\|WP_039302779.1\|3136702_3139000_-\|FdhF/YdeP-family-oxidoreductase	gnl\|CDD\|239168	cd02767, MopB_ydeP, The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP009459.1\|WP_039302766.1\|3128196_3129384_+\|cellulase-family-glycosylhydrolase	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	1.09513e-12
NZ_CP009459.1\|WP_008459210.1\|3130451_3131048_+\|phenylacetic-acid-degradation-protein-PaaY	gnl\|CDD\|131340	TIGR02287, Phenylacetic_acid_degradation_protein_PaaY, phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. [Energy metabolism, Other].	1.80174e-114
NZ_CP009459.1\|WP_039302774.1\|3132045_3135945_+\|ATP-dependent-RNA-helicase-HrpA	gnl\|CDD\|182986	PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional.	0
NZ_CP009459.1\|WP_039302782.1\|3139186_3139729_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|173926	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransferase, Myristoyl-CoA: protein N-myristoyltransferase, and Acyl-homoserinelactone synthase which have a similar catalytic mechanism but differ in types of acyl groups transferred. Leucyl/phenylalanyl-tRNA-protein transferase and FemXAB nonribosomal peptidyltransferases which catalyze similar peptidyltransferase reactions are also included.	1.15487e-08
NZ_CP009459.1\|WP_039302791.1\|3142733_3143231_+\|type-VI-secretion-system-contractile-sheath-small-subunit	gnl\|CDD\|377529	pfam05591, T6SS_VipA, Type VI secretion system, VipA, VC_A0107 or Hcp2. VipA is a family of Gram-negative bacterial proteins that form part of the type VI pathogenic secretion system. Members have been variously defined as VC_A0107 family, Hcp2 and VipA, for ClpV-interacting proteins. VipB and VipA proteins interact very closely to form the shaft of the pathogenic penetrating needle system.	1.48675e-63
NZ_CP009459.1\|WP_039302749.1\|3121266_3122181_-\|1-phosphofructokinase	gnl\|CDD\|274804	TIGR03828, pfkB, 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).	1.99285e-118
NZ_CP009459.1\|WP_039302776.1\|3135978_3136635_-\|O-methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	1.57232e-57
NZ_CP009459.1\|WP_039302757.1\|3124217_3125171_+\|sugar-kinase	gnl\|CDD\|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	2.06122e-92
NZ_CP009459.1\|WP_039302760.1\|3126629_3127292_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.53089e-70
NZ_CP009459.1\|WP_039302755.1\|3123376_3124207_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	1.86552e-42

>NZ_CP009459.1|WP_008459210.1|3130451_3131048_+|phenylacetic-acid-degradation-protein-PaaY
MSIYQIDGLTPVVPEDSYVHPTAVLIGDVILGHRVYIGPNASLRGDFGRIIVEDGANVQDNCVMHGFPEQDTVVEQDGHIGHGAILHGCRIGKNALVGMNAVILDGAQIGENSIVGAAAFVKGKAEFPANTMIIGSPAKAIRELRPEELAWKKQGTKEYQDLVIRCQQTMHQVEPLREVEAGRKRLVFEDLHQPKKSC
>NZ_CP009459.1|WP_039302770.1|3129510_3130437_+|phenylacetic-acid-degradation-operon-negative-regulatory-protein-PaaX
MSSKLDTFIQQAVSAVPISGTSLIVSLYGDALAHRGGEIWLGSLAAMLEPLGFGERFVRTSLFRLNKEGWLDVERVGRRSFYRLTDMGQRMTRRAESKIYRAGQPSWDGKWLLLLSEGLEKTTLQQVKKQLIWQGFGALAPNLMASPSQNLADIQSLLHEAGVAEQVICFEAESPLQTSRAALRSRVEECWLLTDKNERYAEFINSFRPLLPLLREAGSEELTPQRCFHIQLLLIHFYRRVVLKDPLLPDELLPPHWLGQNARQLCINIYQRVAAGALTYVSELGETSVGDLPAPVSGYQKRFGGLTP
>NZ_CP009459.1|WP_039302766.1|3128196_3129384_+|cellulase-family-glycosylhydrolase
MKLKALWAGLALLSTSAFAMDSIAFWDSPQHGGNSFNRLPPDQAYFTALKGYGASWVRLSWDKWQPAQRDFLLGNADHYQGLMTQDLRTLKETLARAHAAGLKVVITPLSLPGMRWAQNNDGRFDDRLWQDKRYWRQSAQFWRDLAGQLKDNPAIAAYNLVNEPAPEKRGGLPEHASLEEMKVWYKTHQGTARDLPAFYQTVIKAIREVDKTTPIMVDSGWYAAADSFSYWPSALSDDRVLYSFHMYEPYDATSAPNLKRLKPYEYPGVVPFGGKQETWNGERVAGYLQQPFWWAKQRGVAQNRMVAGEFGCMRQLAGCRQYLEDVLSALDKTQAHWAFYSFREDAWDGMDYELGKRKVPWSYWQAMDEHKPDTLPRHATPEFEPISRRMGMPVH
>NZ_CP009459.1|WP_039302763.1|3127288_3128107_+|DUF2861-family-protein
MKLPLSALLIISAFSVGATLPQTPLEPVYHQLFNQRGDLANSQLIDVWPRLNSEAQRQAWKEALKAVVSRQCGKDLTPAVPEWLDDLTLTLMQRDMPLNRIYRITLSGNSPRQDINVALRLPDGKKAFAAMPVQYESAGEFRVESEEFTQPLSEGGYMLTVSSGGQQWQQPLALQGIDGLTQIQLHDRAISFTTPQVSPACPKPWLEQTLLNRSDYNQLWWAKSDQLTLVPWPSKPAENIWATVAVVSAENRGGVTVRTEHRLAGPLSAMKN
>NZ_CP009459.1|WP_039302760.1|3126629_3127292_+|response-regulator-transcription-factor
MIPTKAHTLLLIEDDIALGEGLATFLQQEGFSCRWLRSSETVLDHWYQADLAILDRQLPEGDSLRLLPQWLAKKALPVIVLTAKVSVEERVAGLEAGARDYLSKPFAHVELLARIRAQLRPLGDGLLICGELSLLPARQMATWQGKEVALTATEFALLAMLMQMAGRVFTRDELLNQVWGYQSFPSTRTVDTHVLQLRQKLPGLPIASVRGIGYRLELAE
>NZ_CP009459.1|WP_052045591.1|3125173_3126643_+|DUF3404-domain-containing-protein
MLATGQFFDPLQIKGFLVTRRLAPVLRYILLSLCGIFWLQAGLARAAELDESLNRFSEALSQAPPAAQVSLQTLQQLDATLLKPESMYPQFQAWSLPDLTAFYRLDKRCASGGELSSSVKSFLAALCQPNMPPASWFAANPLYPLGGSSAWQYILRHPGAAAALKNSLHVRERPDDLAGIGRLSDDNLEALLGGQHWLLQNGQLWRFSQQHWQRYEAKVWQPLARQSDIELVNTGGRCDMRAGALCVNVREGYGDVWRWLFGLLALFTASGLIWMAWQRRQLRERQRFITQMLTHELRTPIAQLSNVVEHFRRDFDQLPEGAQINFVALADSLQRMRQMAETSKHYLIAEHQREALETPTQVRLSDWLDHLCADRDGLTYCLEENITAGVSLYWGSLCLTNLLDNACRHGKPPAHLTVHKSKTHLIFQVSDSGNITQNPLRNGRRLRWSNSSLGLGLTIVQRVARRLNGRLTFSPAPTTFTLELPYDPD
>NZ_CP009459.1|WP_039302757.1|3124217_3125171_+|sugar-kinase
MNVTICTIGELLVEFLAKKENQGFSQPGEFWGPYPSGAPAIFADQVAKLGFGSVLFSCVGSDAFGEMNVARLEKDGVNVNGIIVLPKATTGSAFVSYRTQSQRDFIFNLPNSACGLLTADHIDDTLLNQCNHFHIMGSSLFSFRIIDAMRKAIENVKSRGGTVSFDPNIRKEMLNIPEMSQAFEYILDYTDIFLPSDGELDYFGRHQGEDEQRLVDNLLQRGVKHVVIKRGPRGASYFSDRQTWHVPGFNVPVVDPTGAGDCFGATFVSLFLSGVQPQQALTWANASGSLAISQRGPMEGTSTRSQIEAFLAAQSAG
>NZ_CP009459.1|WP_039302755.1|3123376_3124207_+|DeoR/GlpR-transcriptional-regulator
MAKPSTSLLKRRLDIAEIVRKNGEIKVDDLAEMLAVSGVTIRNDLNYLEQQGYLKRSFGGAIYTAQQGAPVAQPREPAAVGDKVLEAEMARQAAALISEDETVFLGPGAIVRKVIPFLAGYGDLRLLMNDLAHVCFAQEFLPGEKILLGGVLSGEGNRVEGEVALNALRHYRPTRTLIAVDHIAEDGTLSVRNAESARLLGEAVGQSKHLIAIVASRPVYGEKRYAVGQLAQASGLITPQVVAAEYHSRFLAAGLSNSYTNNECLTWLNPALQKAK
>NZ_CP009459.1|WP_039302752.1|3122205_3123060_-|tagatose-bisphosphate-family-class-II-aldolase
MYIISSKNMLLKAQRLGYAVPAFNIHNLETMQVVVETAAEMRSPLILAGTPGTYSYAGTGNVVAIASDLARLWDQPLALHLDHHEDLSDITRKVQAGIRSVMIDGSHHSFEENVAQVKSVVELSHRYDASVEAELGRLGGVEDDLVVDAKDALYTNPEQAREFVSRTGIDSLAVAIGTAHGLYAAEPKLDFDRLAAIRECVDVPLVLHGASGLPEGDIRRAISLGVCKVNVATELKIAFSDALKQYFIEQPEANDPRHYMQPAKEAMKEVVRKVIHVCGCEGQR
>NZ_CP009459.1|WP_039302749.1|3121266_3122181_-|1-phosphofructokinase
MIHTLTLNTAIDMNIFCGSLQPSAVNRTQRTEYCPNGKGVNVSLVLKHFQQPTHVMGIFGGFTGRYIVEELKKQKINVTPSWVQAPTRINVFINDGNNEYKLVNAGAHIDDECKQQIIQNLDCIRPGDYLVISGSLPPGIESQFYVEVMSLCEQRGGKVILDISHPALRQLLELNPLLIKPNDDELKEIFNLQVENIQQVREAMQTLHQLGARNVLLTLGAKGLYFSNGCKLWFASAPEIELVSSACAGDAALGAFLSHWLNSEDIPEALALASATGADVAASAGLGKLNRLEALLQQVQIVQL
>NZ_CP009459.1|WP_008459208.1|3131226_3131832_-|FMN-dependent-NADH-azoreductase
MSKVLVLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLAANPIPVLDGELVGALRPSDAALTPRQQEALALSDELIAELKAHDVIVFNAPMYNFNIPTQLKNYFDLVARAGVTFRYTEKGPEGLVTGKRALVVTSRGGIHKDTPTDLLVPYLNVFLGFIGITDVNYVFAEGFGYGPEVAAKAQTDAKAAIDSIVAA
>NZ_CP009459.1|WP_039302774.1|3132045_3135945_+|ATP-dependent-RNA-helicase-HrpA
MEMTKPSLSSLFARLDGLMLRDRQRFSRRLHGAKKIKNADSQQALFDTLAAEIDVAAGKVLLREAARPAITYPENLPVSQKKQDILNAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCVGYKVRFSDHVGDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPMVEDNDDVDRDQLQAIFDAVDELGQESSGDILIFMSGEREIRDTADALTKLNLPHTEILPLYARLSNSEQNRVFQSHVGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLLEELGAITSDEDHSVYKLTASGRQLSQLPVDPRLAKMVLEAQKFGCVREVMIITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAYVNLWNYLGEQQKALSSNQFRRQCKLDFLNYLRVREWQDIYTQLRQVVKELGLPVNSEPGDFRSVHSALLTGLLSHIGQKDTEKQEYTGARNARFSIFPGSGLFKKPPKWTMVAELVETSRLWGRIAARIDPEWIEPLAQHLIKRSYSEPHWEKAQGAVMAQEKVTLYGLPIVAARKVNYSDIDPALCRELFIRHALVEGDWQTRHAFFRDNLKLRAEIEDLEHKSRRRDILVDDETLFEFYDQRIAHDVISARHFDSWWKKTSRETPDLLNFEKNMLIREGAEQVSKLDYPNFWHQGNLKLRLTYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGVRRELIIALIKSLPKPVRRNFVPAPNYAEAFLGRATPLELPLLDSLEREFRRMAGVTIDREDWHWDQVPDHLKMTFRVVDEHNKKLKEGKDLSELKGGLKDKVQQTLSAVADDGIEQSGLHIWSFGSLPESYEQKRGNYRMKAFPALVDEKESVAIKLFDNPLEQQQAMWRGLRRLLLLNIPSPVKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGIDKLIAQNGGPVWSEEGFAALHEKVRAELNDSVVEIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDVKAQMSGLVYRGFVTGNGYKRLGDTLRYLQAIEKRLEKMAIDPHRDRAQMLKVESVQQAWQQWLNKLSPASRENEEVQEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQVSL
>NZ_CP009459.1|WP_039302776.1|3135978_3136635_-|O-methyltransferase
MQKKWSDVDEYLVHSLIPSDDIFQQILANNHAAGLPAHDVAPNQGKFLQLLVEVTGARKILEIGTLGAYSSVWMARALPADGKLVTLEADPRHAEVAQRNITLAGLEKQIELHVGPAAETLAGLGHDAPFDVIFIDADKPNNPVYLEWALKYSRPGTLIIGDNVVRDGEVANPESIDDRVQGVRTFIELMGNNPNLSVTALQTVGSKGWDGFTLARVN
>NZ_CP009459.1|WP_039302779.1|3136702_3139000_-|FdhF/YdeP-family-oxidoreductase
MKFKSAIKPYQAAAGGWGSLEATTRFVIDSKHALKNLRNLMRMNKAKGFDCPGCAWGDDNKSTFSFCENGAKAVTWEATRRFIDSDFFAQHSVSKLYQQSDYFLEYQGRLTEPLSYNPQTDRYEPISWASALNLIAQHIQAMDNPNQIELYTSGRASNEASYLYQLFGRMLGTNNFPDCSNMCHEASGSGLKRSIGVGKGTIRLDDFDKADAIFVFGQNPGTNHPRMLHSLRHAAENGAQIVTFNTLRERGLERFADPQKPLEVITPLAGTISTNYYQPNLGGDMAAVRGMAKALLETHRRLITEGEDGVFDLAFIEAHTHGVEAWFTAIDETNWEKITRQSGLSELQLRDAAAIWQHSKRVIFTWAMGITQHKHSLNTVREIVNLQLLGGHLGRPGAGLCPVRGHSNVQGNRTMGIDEKPPVSLLDNLAKHFDFTPPREHGHNTVEALAAMLRDEIKVLIALGGNLAAAAPDSPRTEEAISRCGLTVFISTKLNRSHLVPGKASLILPTLGRTEEDMQVSGRQFVTVEDSFSMVHASEGIGKPIADTQRSETAIVASIADAVLGRTKLDWLALADDYNLIRDHIAATLPGFKDFNQRCEEPGGFYLGNAAAELRFNTPSGKAEFSNAPLPDSLWQGVEAPFTLQTLRSHDQYNTTIYGLDDRYRGVYGQREILFIHPDDMGKLGLNDGDKVDIETIWHDGITRKVSGFKLVAYDIPRGNLAAYYPETNPLVPLGSIGDGTGTPTSKSVPVKITRSEAENTRRIA
>NZ_CP009459.1|WP_039302782.1|3139186_3139729_+|GNAT-family-N-acetyltransferase
MLYASDIRDIEELQHVETAAARRFLAVPELAFLASAGVTDRQTHAAAIENKLAWKVAGSDGRIKGFCYCELYEDSLYLAEISTHPDFQRQGVGAMLLAEVKRMGQALGVSQITLTTYRDVSWNGPWYGRHGFVVMNDAELTPALTCCLAHQREEGLMILPRCAMRYLLGEGKSPVGKPFL
>NZ_CP009459.1|WP_039302785.1|3140125_3140377_+|HTH-domain-containing-protein
MTPPEKSTQLANRIAGIFCEMLSCERVSRHQLASKFGVSERTIYRDLRRLSNYVYHVGDDQYALSLEVTQQLESYLQRVKRGK
>NZ_CP009459.1|WP_039302788.1|3140483_3142133_+|EAL-domain-containing-protein
MRTESLTDIAYRHFVESVKDYAIYMLDIDGTVATWNEGALRAKGYLREEIVGQFFGVFYSEAEQKNGLPERNLNIALKNGKFEGEGWRYRKDGSRFWAHVVIDAIYDEHQTLLGFAKITRDISEQKVVIDKISWLARYDALTGLPNRVEFFSFVEKLFTESDYNHIAICTVDLDKFKEINDTEGHLVGDQLLQRVSSSVLKAMEKDEIVARFGGDEFVAAKPYNHDDELRNFTERLHGCFVGKQIFAHSEITVSASIGVAIYPDDATDINTLISNSDLAMYRAKANLDNKICWYEKDMDEKTRLRNLMAADIRRGIKEGQFFIHYQEKRSLKDKAITGYEALLRWNHPEQGLIPPDEFIPIAEESGAIVPLGYWVIETVCKESLANKLDKKISINISPVQLRNLSFIDNVRDILMRTAWPITLLEFEVTETAFIINKKLTFNILHQFQKMGISIALDDFGTGYSSLSTLREFHFDVIKLDRSFLTNVESNFQARSFVRAIISLGNSINTPLIAEGVETNEQLRILEEEGCTEIQGFLFGQPVDIKNIHR
>NZ_CP009459.1|WP_039302791.1|3142733_3143231_+|type-VI-secretion-system-contractile-sheath-small-subunit
MADSFQGEVPKARINLKLDLHTGGAQKKTELPLKLMVTGDFSHGEETAPLSERVKTSVNKNNFDSVLSEYSPKINLSVKNMLSDDGGEENIHLVFREMKDFTPEEVARQIPQLKAMLAMRNLLRDLKANLLDNQSFRKELEKILIDPVLSAELRAELSALAPKQA
>NZ_CP009459.1|WP_039302794.1|3143263_3144811_+|type-VI-secretion-system-contractile-sheath-large-subunit
MLMSVKNENTANAESIVLEQPEAGRVYASLFEKINLSPVSAISALDIWQDTQAMSDATADERLTAGMQVFLECLSKAGSKVDKLDKALIDHHIAELDFQISRQLDAVMHHDEFQAVESLWRGVKSLVDKTDFRQNVKIELLDLSKDDLRQDFEDAPEIIQSGLYLQTYVAEYDTPGGEPIAALVSAYEFDASAQDVALLRNISKVSAAAHMPFIGSAGPKFFLKESMEDVAAIKDIGNYFDRAEYIKWKSFRDTDDSRYIGLVMPRVLGRLPYGPDTVPVRSFNYVEEVKGPDHDKYLWTNASFAFAANMVRSFIHNGWCVQIRGPQAGGAVKDLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYACFFSANSTQKPALYDTADATANSRINARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNTWVRSLVTEMTDPGDELQASHPLRDAKVVVEDIEDNPGFFRVKLYAVPHFQVEGMDVNLSLVSQMPKAKA
>NZ_CP009459.1|WP_039302798.1|3144832_3146173_+|type-VI-secretion-system-baseplate-subunit-TssK
MKTEQPLWGRGQMVSPQHFQQQVAYAAWSAECIARQGLSHPWGVIEAIFEPDMLKLGRLQARHLHIRFQDGTLIDTDNTDALPPALILGGESLGTEIVLALPLLRSNGGNCLKPDEVAERPVRFRQRWRDVRNLFGEDTRQIAVIQPELTLRFASQDNSDYLTCPVASLRQDSQGVWGLDETFLPPLLALQGSRWLVTQLEQLMTQLRARLGRLMAMRRESNERMADFAVADVSLFWLLNALNSAEPVLGQLQRHQQSPPERLYPELARLAGSLLTFSLEHQVSAIPAYQHDRLNAVFPPLFDLLGDLLEASLPSRVVPITLEYDPRLRFWQARLHDPRLREDADYYLSVRSSLPVAQMQEQFPRQCKVGSPDLVRSLVNSSRVGVPLTPLRHVPAAIPLRLENQYFSLNVSDPLAIDMLQSGTCMFYVPGMLGEPELELFAVLRT

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Crispr_ID: NZ_CP009459_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009459_5

4099895-4099970

Orphan

Consensus_repeat	Method
GGAATAAAAAGTGCCCTCTGTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009459_5

>merge|NZ_CP009459|5|4099895-4099970|CRISPRCasFinder
GGAATAAAAAGTGCCCTCTGTTGCTTGCTTTACCCCATGCCCCTTTGGGTGATGGAATAAAAAGTGCCCTCTGTTG

>NZ_CP009459|5|5|4099895-4099970|CRISPRCasFinder
GGAATAAAAAGTGCCCTCTGTTG	CTTGCTTTACCCCATGCCCCTTTGGGTGAT
GGAATAAAAAGTGCCCTCTGTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009459.1\|WP_039295245.1\|4097326_4098688_+\|tRNA-5-hydroxyuridine-modification-protein-YegQ	unknown	unknown	gnl\|CDD\|237969
NZ_CP009459.1\|WP_039304741.1\|4096939_4097197_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009459.1\|WP_039304767.1\|4107580_4108396_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376282
NZ_CP009459.1\|WP_039304743.1\|4098938_4099838_+\|lipid-kinase-YegS	unknown	unknown	gnl\|CDD\|237281
NZ_CP009459.1\|WP_039304733.1\|4087100_4090223_+\|MdtB/MuxB-family-multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182501
NZ_CP009459.1\|WP_039304757.1\|4103694_4104675_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|238919
NZ_CP009459.1\|WP_039304751.1\|4101399_4102692_+\|nucleoside-permease	unknown	unknown	gnl\|CDD\|129967
NZ_CP009459.1\|WP_039304735.1\|4090223_4093307_+\|multidrug-efflux-RND-transporter-permease-subunit-MdtC	unknown	unknown	gnl\|CDD\|182589
NZ_CP009459.1\|WP_039304761.1\|4105481_4106282_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
NZ_CP009459.1\|WP_008455132.1\|4096106_4096829_+\|two-component-system-response-regulator-BaeR	unknown	unknown	gnl\|CDD\|182665
NZ_CP009459.1\|WP_156107045.1\|4102691_4103708_+\|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl\|CDD\|224315
NZ_CP009459.1\|WP_039295267.1\|4104648_4105395_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP009459.1\|WP_039304739.1\|4094715_4096110_+\|two-component-system-sensor-histidine-kinase-BaeS	unknown	unknown	gnl\|CDD\|182539
NZ_CP009459.1\|WP_039304730.1\|4085847_4087101_+\|MdtA/MuxA-family-multidrug-efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|183194
NZ_CP009459.1\|WP_039304737.1\|4093303_4094719_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|182502
NZ_CP009459.1\|WP_081943036.1\|4110304_4111243_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377158
NZ_CP009459.1\|WP_039304747.1\|4100087_4101140_-\|class-I-fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|236431
NZ_CP009459.1\|WP_039304764.1\|4106278_4107067_-\|hydroxyethylthiazole-kinase	unknown	unknown	gnl\|CDD\|236477
NZ_CP009459.1\|WP_156107077.1\|4108434_4109793_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271184
NZ_CP009459.1\|WP_039304728.1\|4085169_4085466_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|372700

Protein	Function_ID	Function_description	E-value
NZ_CP009459.1\|WP_039295245.1\|4097326_4098688_+\|tRNA-5-hydroxyuridine-modification-protein-YegQ	gnl\|CDD\|237969	PRK15452, PRK15452, putative protease; Provisional.	0
NZ_CP009459.1\|WP_039304767.1\|4107580_4108396_-\|hypothetical-protein	gnl\|CDD\|376282	pfam18863, AbiJ_NTD4, AbiJ N-terminal domain 4. Alpha + beta. Found fused to AbiJ-like HEPN and heat repeats.	5.67866e-26
NZ_CP009459.1\|WP_039304743.1\|4098938_4099838_+\|lipid-kinase-YegS	gnl\|CDD\|237281	PRK13054, PRK13054, lipid kinase; Reviewed.	0
NZ_CP009459.1\|WP_039304733.1\|4087100_4090223_+\|MdtB/MuxB-family-multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|182501	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit.	0
NZ_CP009459.1\|WP_039304757.1\|4103694_4104675_+\|sugar-kinase	gnl\|CDD\|238919	cd01944, YegV_kinase_like, YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.	4.0506e-102
NZ_CP009459.1\|WP_039304751.1\|4101399_4102692_+\|nucleoside-permease	gnl\|CDD\|129967	TIGR00889, Putative_nucleoside_transporter_YegT, nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. [Transport and binding proteins, Nucleosides, purines and pyrimidines].	6.47579e-174
NZ_CP009459.1\|WP_039304735.1\|4090223_4093307_+\|multidrug-efflux-RND-transporter-permease-subunit-MdtC	gnl\|CDD\|182589	PRK10614, PRK10614, multidrug efflux system subunit MdtC; Provisional.	0
NZ_CP009459.1\|WP_039304761.1\|4105481_4106282_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	6.29446e-156
NZ_CP009459.1\|WP_008455132.1\|4096106_4096829_+\|two-component-system-response-regulator-BaeR	gnl\|CDD\|182665	PRK10710, PRK10710, DNA-binding transcriptional regulator BaeR; Provisional.	1.19674e-173
NZ_CP009459.1\|WP_156107045.1\|4102691_4103708_+\|ADP-ribosylglycohydrolase-family-protein	gnl\|CDD\|224315	COG1397, DraG, ADP-ribosylglycohydrolase [Posttranslational modification, protein turnover, chaperones].	8.51854e-110
NZ_CP009459.1\|WP_039295267.1\|4104648_4105395_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	2.6745e-67
NZ_CP009459.1\|WP_039304739.1\|4094715_4096110_+\|two-component-system-sensor-histidine-kinase-BaeS	gnl\|CDD\|182539	PRK10549, PRK10549, two-component system sensor histidine kinase BaeS.	0
NZ_CP009459.1\|WP_039304730.1\|4085847_4087101_+\|MdtA/MuxA-family-multidrug-efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|183194	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit.	0
NZ_CP009459.1\|WP_039304737.1\|4093303_4094719_+\|MFS-transporter	gnl\|CDD\|182502	PRK10504, PRK10504, putative transporter; Provisional.	0
NZ_CP009459.1\|WP_081943036.1\|4110304_4111243_+\|hypothetical-protein	gnl\|CDD\|377158	pfam03895, YadA_anchor, YadA-like membrane anchor domain. This region represents the C-terminal 120 amino acids of a family of surface-exposed bacterial proteins. YadA, an adhesin from Yersinia, was the first member of this family to be characterized. UspA2 from Moraxella was second. The Eib immunoglobulin-binding proteins from E. coli were third, followed by the DsrA proteins of Haemophilus ducreyi and others. These proteins are homologous at their C-terminal and have predicted signal sequences, but they diverge elsewhere. The C-terminal 9 amino acids, consisting of alternating hydrophobic amino acids ending in F or W, comprise a targeting motif for the outer membrane of the Gram negative cell envelope. This region is important for oligomerization.	2.20933e-11
NZ_CP009459.1\|WP_039304747.1\|4100087_4101140_-\|class-I-fructose-bisphosphate-aldolase	gnl\|CDD\|236431	PRK09250, PRK09250, class I fructose-bisphosphate aldolase.	0
NZ_CP009459.1\|WP_039304764.1\|4106278_4107067_-\|hydroxyethylthiazole-kinase	gnl\|CDD\|236477	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated.	9.58397e-125
NZ_CP009459.1\|WP_156107077.1\|4108434_4109793_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271184	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain containing six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.51716e-30
NZ_CP009459.1\|WP_039304728.1\|4085169_4085466_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|372700	pfam13744, HTH_37, Helix-turn-helix domain. Members of this family contains a DNA-binding helix-turn-helix domain.	1.16596e-09

>NZ_CP009459.1|WP_039304743.1|4098938_4099838_+|lipid-kinase-YegS
MERSPHSFLILNGKGAGNPQLREAVHTLREEGYTLHIRVTWEKGDAERYIEEALSLGVDTVVAGGGDGTINEIATCLAKLSSGSRPALGILPLGTANDFATSAGIPEDCEKALRLALFGKATNIDLVQVNDEAFFINMATGGFGTRITTETPEKLKAALGGVSYFIHGLMRMDMLKPDRCDIRGEGFSWQGDALVIGIGNGRQAGGGQQLCPEALINDGLLELRIFTGEDLLPALLTTLTRPEENPNIIEGKSAWFEISAPHEITFNLDGEPLSGRHFRIEVHPNALACRLPPHCPLLE
>NZ_CP009459.1|WP_039295245.1|4097326_4098688_+|tRNA-5-hydroxyuridine-modification-protein-YegQ
MFKPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLQLGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLKPVIDMGPDALIMSDPGLIMMVREAFPEMDIHLSVQANAVNWATVKFWKQMGLTRVILSRELSLEEIAEIREQVPEMELEIFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYKVQEGKEDDIGNIVHVHEPIPVQNVEPTLGVGAPTDKVFMVEEAKRPGEYMTAFEDEHGTYIMNSKDLRAIEHVERLTKMGVHSLKIEGRTKSYYYCARTAQVYRRAIDDAAAGKPFDPTLLQTLEGLAHRGYTEGFLRRHTHDSHQNYEYGHSISESQQFVGEFTGERRGDLAAVAVKNKFLLGDSLEMMTPQGNITFTLETLENGKSQPIDVAPGDGHTVWMPVPQEIALDYALLMRNLSGQTTRKPHAN
>NZ_CP009459.1|WP_039304741.1|4096939_4097197_+|hypothetical-protein
MEKYVFYSKDIAFNVYPKASLGKEEKKQLAADGFQKIGFEITATNEAAALDKFIAHFKENTEALKEYTENIAFASVLFVGVPLIA
>NZ_CP009459.1|WP_008455132.1|4096106_4096829_+|two-component-system-response-regulator-BaeR
MTELPIDDSTPRILIVEDEPKLGQLLIDYLRAASYAPTLLNHGDQVLPYVRHTPPDLILLDLMLPGTDGLTLCKEIRRFSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKRQLAISAGSEESPLVIDEGRFQAIWRGKLLDLTPAEFRLLKTLSHEPGKVFSREMLLNHLYDDYRVVTDRTIDSHIKNLRRKLEALDTDQSFIRAVYGVGYRWEADAGRVI
>NZ_CP009459.1|WP_039304739.1|4094715_4096110_+|two-component-system-sensor-histidine-kinase-BaeS
MKLYRSGITGKLFLAIFSTCLLVLAIMHWGVRLSFERGFIDYIKRGNTQRIEMLSDALGEQYALHGNWRFLRHNDRFVFQILRSFERDGDEAHGMPPQGWRTKFWVVDQNYQVLVGPREKLPPDGMRKPINVNGQDVGWVIASPIERLTRNTDINFDRQQRRTSWIIVALSSLLAAAATFLLARGLLAPVKRLVEGTHKLAAGDFSTRVAVGSQDELGRLAQDFNQLASTLEKNHKMRRAYMADISHELRTPLAVLRGELEAIQDGVRQFTPESVTSLQMEVATLTKLVDDLHQLSMSDEGALAYQKKSLDIIALLEVVAGAFRSRFDSRGLAIRLALPESAIIFGDGDRLMQLFNNLLENSLRYTDSGGQLVISGKIVNQQFVMSFDDSEPGVSDEQLSQLFDRFYRAEGSRNRASGGSGLGLSICQNIVTAHGGTLTASHSRFGGVSITVELPLETETSRTL
>NZ_CP009459.1|WP_039304737.1|4093303_4094719_+|MFS-transporter
MTDLPTAVRWQLWIVAFGFFMQALDTTIVNTALPSMAHSLGVSPLHMHSVVVAYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCSNASTLNELVLARVVQGIGGAMMVPVGRLTVMKIVPRAQYMAAMTFVTIPGQVGPLLGPALGGVLVEYASWHWIFLINIPVGIVGAIATLWLMPNYTMQTRRFDISGFLLLAFGMAALTIALDGQKGLGISSETLGLLILGGVIAILLYLWHARDNENALFNLNLFNTKTFSLGLLGSLCGRIGSGMLPFMTPVFLQIGMGFSPFHAGLMMVPMVLGSMGMKRIVVQVVNRFGYRNVLVVATLGLALITLMFMGTALMGWFWLLPVVLFIQGMVNSMRFSSMNTLTLKDLPDDLASGGNSMLSMVMQLSMSIGVTVAGLLLGMFGHQQLPAGGEQAHSIFMYTYFCMALVIALPALLFARVPNDRSENTVISRRKRSET
>NZ_CP009459.1|WP_039304735.1|4090223_4093307_+|multidrug-efflux-RND-transporter-permease-subunit-MdtC
MKFFALFIYRPVATILLTVAITLCGVLGFRLLPVAPLPQVDFPVIMISASLPGASPETMASSVATPLERSLSRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAAQSLLPSGMPGRPTYRKANPSDAPIMILTLTSDTLSQGELYDFASTQLAQTVSQIDGVGDVDVGGSSLPAVRVDLNPQALFNQGVSLDAVRTAISNANIRRPLGSVEDSTSRWQIQTNDELKKAANYMPLIVNYNNGSAVRLQDVANVTDSVQDVRNAGMTNAKPAILLMIRKSQEANIIETVDRIRAKIPELRETIPASIDLQVAQDRSPTIRASLAEVEQSLVISVSLVILVVFLFLRSGRATFIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISRHLEAGVKPMQAALQGVREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLFREFAVTLSVAIGISLVVSLTLTPMMCGWLLKNRPPEKRNKNRGFGRLLIAMQGGYARSLKWVLNHTRLVGVVLLGTITLSVWLYIAIPKTFFPEQDTGRLMGNIQADQSISFQAMRGKLQDFMKIIREDPAVDNVTGFTGGSRVNSGMMFISLKPLSERSETAQQVIDRLRGKLAKEPGANLYLMAVQDIRVGGRQANASYQYTLLSDDLSALREWEPKIRKALAALPELADVNSDQQDNGSEMDLIYDRETMSRLGINVSDANNLLNNAFGQRQISTIYQPLNQYKVVMEVDPRYTQDISSLNQMFVINSEGKSIPLSYFAKWQPANAPLSVNHQGLSAASTISFNLPDGVSLSEASDAIDRTMTSLGVPSTVRGSYAGTAQVFQQTMNSQVILILAAIATVYIVLGVLYESYVHPLTILSTLPSAGVGALLALELFSAPFSLIALIGIMLLIGIVKKNAIMMVDFAIEAQRKGDLTPEEAIFQACLLRFRPIMMTTLAALFGALPLVLTSGDGAELRQPLGITIVGGLVVSQLLTLYTTPVVYLFFDRLRLRFSRKPRESKALSV
>NZ_CP009459.1|WP_039304733.1|4087100_4090223_+|MdtB/MuxB-family-multidrug-efflux-RND-transporter-permease-subunit
MQVLPPGSTGGPSRLFILRPVATTLLMVAILLAGIIGYRFLPVSALPEVDYPTIQVVTLYPGASPDVITSAITAPLERQFGQMSGLKQMSSQSAGGASVITLQFQLTLALDVAEQEVQAAINAATNLLPTDLPNPPVYSKVNPADPPIMTLAVTSTALPMTQVEDMVETRVAQKISQVSGVGLVTLAGGQRPAVRVKLNAPAIAALGLTSETIRTAITNANVNSAKGSLDGPERAVTLSANDQMKSAQEYRDLIIAYQNGAPIRLGDIATVEQGAENSWLGAWANKQQAIVMNVQRQPGANIIETADSIRQMLPTLTQSLPKSVEVKLLSDRTTNIRASVTDTQHELMLAIALVVMIIYLFLRNVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAISILISAVVSLTLTPMMCARMLSHESLRKQNRFSRASEKMFDNIIAAYGRLLSKVLNHPWLTLSVAFGTLALTIVLWIFIPKGFFPIQDNGIIQGTLQAPQSVSFASMAQRQQQVADVILKDPAVESLTSFIGVDGTNPSLNSARLQINLKPLSDRDDRIPTVIDRLQQNVAGVPGVQLYLQPIQDLTIDTTVSRTQYQFTLQATSLDELSTWVPQLEDKLKTLPQLADISSDWQDQGLMAYVNVDRDSASRLGITMSSVTSALYNAFGQRLISTIYTQANQYRVVLEHDTSTTPGLSALDNIRLTSSTGGSIPLSAIAKVEQRFAPLSINHLDQFPSTTFSFNVPEGQSLGDAVTAITSAEKELAMPSDITTQFQGSTLAFQAALGSTIWLIVASVVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALMLAGAELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMAPYEAIYQACLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGIGMVGGLLLSQVLTLFTTPVIYLLFDRLSHYTRRRFGRQHEEA
>NZ_CP009459.1|WP_039304730.1|4085847_4087101_+|MdtA/MuxA-family-multidrug-efflux-RND-transporter-periplasmic-adaptor-subunit
MKGTLTSRWLWITAFILVVIAAVWFWHSHSTSSGTQPQAKSGQTSAQGGRRGMRGGALAPVQAATATSEAVPHYLTGLGTITAANTVTVRSRVDGQLLAIHFQEGQQVKAGDLLAEIDPSQFKVALAQAQGQLAKDQATLANARRDLARYQQLVKTNLVSRQDLDTQQSLVASSLGTVKADEAMVASAQLQLNWSRVTAPIDGRVGLKQVDIGNQISTSDTNGIVVLTQTHPIDLVFTLPENDIATVIKAQKAGETLSVEAWDRTNTTKLSNGKLLSLDNQIDTTTGTIKLKARFDNLDDALFPNQFVNARMLVDTQQNAVVIPAGALQMGNEGHFVWVLNSDNKVSKHLVTPGIQDSQKVVITAGVSAGDRVVTDGIDRLTEGAQVEVVEPHSAADDNAKPAAQTKSGHKHNGARS
>NZ_CP009459.1|WP_039304728.1|4085169_4085466_-|helix-turn-helix-domain-containing-protein
MKTLTEVMAEFSPEEQAEIRAMTEVLILETGLQLVREQQGLSQKQVAQKMGVSQPAIAAIEQRGNDLKVLTLKRYVEALGGKLSLHLEFPESDRRFQI
>NZ_CP009459.1|WP_039304747.1|4100087_4101140_-|class-I-fructose-bisphosphate-aldolase
MTDIAQLLGKDADGLLQHRCMTIPADQIYLPGSDYVDRVMVDNNRPPAVLRNMQTLYNTGRLAGTGYLSILPVDQGVEHSAGASFAANPLYFDPKNIVELAIEAGCNCVASTYGVLASVSRRYAHRIPFLVKLNHNETLSYPTTYDQTLYASVEQAFNMGAVAVGATIYFGSPESRRQIEEISAAFERAHELGLVTVLWAYLRNSAFKKDGVDYHVSADLTGQANHLAATIGADIVKQKMAENNGGYKAVNFGYTDEKVYSKLTTDNPIDLVRYQLANCYMGRAGLINSGGAAGGATDLADAVRTAVINKRAGGMGLILGRKAFKKSMADGVKLINAVQDVYLNEKVTIA
>NZ_CP009459.1|WP_039304751.1|4101399_4102692_+|nucleoside-permease
MKVLSMKRTTISLSFMMFMEWFIWGAWFVPLWLFLNKSGFTAGEIGWSYACTAIAAILSPILVGSLTDRFFAAQKVLALLMFVGAGLMYLAAQQTEFVYFFPLLLAYSLTYMPTIALTNSIAFSNVDDVERDFPRIRVMGTIGWIASGIVCGFLPQMMGFSDISPTNVPLLITAISSVALGVFAFFLPNTPPKSTGKLSLKVMLGLDALVLLKDKNFLVFFFCSFLFAMPLAFYYIFANGYLTEVGMHNATGWMTLGQFSEIFFMLALPFFTKRFGIKKVLLLGLITAAIRYGFFVYGDASHLFTYGLLFLGILLHGVSYDFYYVTAYIYVDKKSPVYMRTAAQGLITLCCQGFGSLLGYSLGGKMMEKMFAYSSPVNGQTFNWAGMWGFGAIMIAVIAVLFMVFFRESDKEIAAIAVAGDESEKVLKEA
>NZ_CP009459.1|WP_156107045.1|4102691_4103708_+|ADP-ribosylglycohydrolase-family-protein
MMENRILGAFYGQMLGDAMGMPSELWPRSRVKAHFGWIDKFLPGPAENNAACYFARAKFTDDTSMALALADAIIEHHGAINPDAIGRHILAWAEGFDAFNKNVLGPTSKIALNAIKRGTPVSELENNGVTNGAAMRASPLGCLLPTASLDEFVDEVALASSPTHKSDLAIAGAVVISWAISRAIDGASWATICDELPSIARHAQEKRITTFSASLAARLELALSVARKARGTESAMEEIYQLVGTGTSTVESVPAAIAMVELAKTDPNRCAILCANLGGDTDTIGAMATAICGALNGVESIDPALKQELDEENQLDFTRYSRIFMAYRQQREASYEAK
>NZ_CP009459.1|WP_039304757.1|4103694_4104675_+|sugar-kinase
MKPNELLSKLPLLQAQRPVCVLGSAVIDVIADAYALPWRGCDIELHQQGVNIGGCALNIAITLSRLGIDSQNALPIGQGTWADIIHNSLEKQHIRSEIHTDAGDNGWCLALVEPDGERTFMSFRGVEHQWNQAWLDGLTIPPGSLLSLSGYQLAGPCAELLVGWLESLQAITPFIDFGPRIADIPQPLLARIMACKPIVSLNRQEAAIVAEWLEVDPENIEAICRAWQTRYASPLIVRLDKDGAWFADGNSMGIAAPFPTSVADTIGAGDSHAGGTIAGLAAGWSLEEAVSLGNAVASYVVGHRGGDCAPKLAQLEQTLLLADENV
>NZ_CP009459.1|WP_039295267.1|4104648_4105395_-|GntR-family-transcriptional-regulator
MEQAHHQLVEQLKQRFAAPDNAPLYLKFVETVKNAVRAGLLPQGNILPGERDLSQLTGVSRITVRKAMQALEDEGVVTRSRGYGTQINATFEYSLKEARGFSQQVVLRGKKPNTLWVNKRVVKCPADVAEQLAIPAESEVFLLKRIRYVDEDAVSIEESYVPTGLIADPDEIGVSLYDYFRSQNIIPQRTRSRVSARMPDSEFQSHIKLETPVPVLVIKQVAFDPHNRPIEYSISHCRSDLYVFVCEE
>NZ_CP009459.1|WP_039304761.1|4105481_4106282_-|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MKRINALTIAGTDPSGGAGIQADLKTFSALGAYGTSVITALVAQNTRGVQSVYRIEPEFVAAQLDSVLSDVRIDTTKIGMLAEADIVEAVAERLAFYKAPNVVLDTVMLAKSGDPLLAPSAVDSLRRKLLPHVALITPNLPEAAALLDAPHARSEKEMREQGEALLAMGCEAVLMKGGHLDDAESPDWLFTRHDVQRFTAPRVQTKNTHGTGCTLSAALAALRPRHDDWAQTVAAAKIWLSKALAQADSLEVGHGIGPVHHFHEWW
>NZ_CP009459.1|WP_039304764.1|4106278_4107067_-|hydroxyethylthiazole-kinase
MQPDLLPGATAVSVLHHLRQHSPLVHCMTNDVVQTFTANVLLALGAAPAMVTEAEEAAQFSGFASALLVNIGTLTSGQATAMLAAIHAANSAGTPWALDPVAVGGLAFRTRFARDIIQLKPAAIRGNASEIMALAGEQAGGRGVDSTDDALSAIPAAQKLARETGAVVAVTGETDYVTDGERTLAVTGGGELMTRVVGTGCALSAVVAACCALPGDRLDNVASACRFMALAGEQAIAASCGPGSFTPAFLDALYLLNAEVLA
>NZ_CP009459.1|WP_039304767.1|4107580_4108396_-|hypothetical-protein
MARPFSQRYGHVAVEDTLQVEVINENTRTALWSCLYSELLIKKYFEHAAHKIISEFWCGFLYLPADEEPIFEYPLSSYKDLKEYMKDFFRLAEWHEVLDFVEYTVSVSPFLSEPYNKIFKRMCLGYSIINELITPIISPEEIDSIDGAMNIGTNASRLHFNRALSLLSNREQPDFRNSIKESISAIESLCKKISGNDKGTLGDCLKTIEDKGHIHPAMKRAFQQLYGYTSDQGGIRHALTDDSEEPTLEDARYMLVICSAFSNYLISKMSD
>NZ_CP009459.1|WP_156107077.1|4108434_4109793_-|tyrosine-type-recombinase/integrase
MVNHSSVYLIFITETEAVLILITKCIRYTFLRHSIYYVQFCLPDGKMFRRSLGTDSHREANTLMIALMPSMLNVKAGACPPEKLSSQMEELTQTRMLYRAARVSPDLYIKPTIAAPTNSVDVTDWDRSVLTLGEAWGRYVKDKGKSWTAAIHCANERYMEVMLTVLDAERDVRSITRQDIKHVMEAVTGLPKRVVQPYRSMTIEQLLSCDDIPEEHLLGTEAIHKHLKIYKSLFKTYLTEDKGVLSVAPTDGVTAPPSSARYGAYTNSEMKSLVRYAIEEAKQDWLKWIILLLAYTGARRGELATLTTSQVCFDDDSNRHYLLIKEGKTDNAVRQVPLHQHLIDLGFLEFVAGKLDKLFPEVAGSNMAKIGKVLSDVRDALHIPYRDIQNQRRIVHSFRHSVVTAASGWMNDITHLQQVIGHEKTGTGITRRYLHTFPLSVVCHIIDGLDWR
>NZ_CP009459.1|WP_081943036.1|4110304_4111243_+|hypothetical-protein
MHWNVQFIYGERKMKFVNVSQSLAVVLSIFVFSASARADMVSDFYNSMVNKTITWQNANARFESMDATQQQAVRDYDHAHNTNFTSDFVSGITTTPHLDAPHSIVASTLTPSKTTVVDPIVPPTMDKGRHLDSTATDADRQAAKDKAMVEYVQSHVKNGVDGKNGTDGINGKNGLVTTETKLDTATQARVSTNANNISLNTEHAENNTRLIQDNSQSIGKLNNAFSALKDEVNHNQKEANAGISGAMAMSNIPQVMNNQTVAIGAGIGGYEGENALAVGASTRIGNTVVVKATVSDDTENNVGYGAGLSVGW

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Crispr_ID: NZ_CP009459_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009459_6

4549944-4550020

Orphan

Consensus_repeat	Method
TATTGTTTATTCCCTCTCCCTCTGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009459_6

>merge|NZ_CP009459|6|4549944-4550020|CRISPRCasFinder
TATTGTTTATTCCCTCTCCCTCTGGGCTGAGGGAGAAAAAACGACATGCGGTATTGTTTATTCCCTCTCCCTCTGGG

>NZ_CP009459|6|6|4549944-4550020|CRISPRCasFinder
TATTGTTTATTCCCTCTCCCTCTGGG	CTGAGGGAGAAAAAACGACATGCGG
TATTGTTTATTCCCTCTCCCTCTGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009459.1\|WP_039305615.1\|4559699_4561241_+\|exopolyphosphatase	unknown	unknown	gnl\|CDD\|182781
NZ_CP009459.1\|WP_008459357.1\|4550181_4550724_-\|acireductone-dioxygenase	unknown	unknown	gnl\|CDD\|224704
NZ_CP009459.1\|WP_039305562.1\|4536472_4538014_-\|nitric-oxide-reductase-transcriptional-regulator-NorR	unknown	unknown	gnl\|CDD\|235331
NZ_CP009459.1\|WP_039305586.1\|4546052_4547291_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227601
NZ_CP009459.1\|WP_039305589.1\|4547554_4548754_-\|S-methyl-5-thioribose-kinase	unknown	unknown	gnl\|CDD\|236561
NZ_CP009459.1\|WP_039305612.1\|4557615_4559676_+\|polyphosphate-kinase-1	unknown	unknown	gnl\|CDD\|274734
NZ_CP009459.1\|WP_039305572.1\|4541194_4542274_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|182570
NZ_CP009459.1\|WP_039305575.1\|4542450_4543956_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP009459.1\|WP_039306456.1\|4555766_4556804_+\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP009459.1\|WP_039305601.1\|4556803_4557442_+\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|235544
NZ_CP009459.1\|WP_039296041.1\|4553544_4554831_-\|uracil-permease	unknown	unknown	gnl\|CDD\|236744
NZ_CP009459.1\|WP_039305598.1\|4551553_4552714_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|181642
NZ_CP009459.1\|WP_008459367.1\|4554916_4555543_-\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_CP009459.1\|WP_039305569.1\|4539683_4540820_+\|NADH:flavorubredoxin-reductase-NorW	unknown	unknown	gnl\|CDD\|179902
NZ_CP009459.1\|WP_039305565.1\|4538235_4539687_+\|anaerobic-nitric-oxide-reductase-flavorubredoxin	unknown	unknown	gnl\|CDD\|235475
NZ_CP009459.1\|WP_039305582.1\|4544976_4546041_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380528
NZ_CP009459.1\|WP_039305595.1\|4550720_4551404_-\|acireductone-synthase	unknown	unknown	gnl\|CDD\|319768
NZ_CP009459.1\|WP_039305592.1\|4548861_4549887_+\|S-methyl-5-thioribose-1-phosphate-isomerase	unknown	unknown	gnl\|CDD\|273112
NZ_CP009459.1\|WP_085938907.1\|4552745_4553471_-\|DnaA-inactivator-Hda	unknown	unknown	gnl\|CDD\|181224
NZ_CP009459.1\|WP_039305578.1\|4543952_4544948_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119321

Protein	Function_ID	Function_description	E-value
NZ_CP009459.1\|WP_039305615.1\|4559699_4561241_+\|exopolyphosphatase	gnl\|CDD\|182781	PRK10854, PRK10854, exopolyphosphatase; Provisional.	0
NZ_CP009459.1\|WP_008459357.1\|4550181_4550724_-\|acireductone-dioxygenase	gnl\|CDD\|224704	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown].	8.29729e-64
NZ_CP009459.1\|WP_039305562.1\|4536472_4538014_-\|nitric-oxide-reductase-transcriptional-regulator-NorR	gnl\|CDD\|235331	PRK05022, PRK05022, nitric oxide reductase transcriptional regulator NorR.	0
NZ_CP009459.1\|WP_039305586.1\|4546052_4547291_+\|hypothetical-protein	gnl\|CDD\|227601	COG5276, COG5276, Uncharacterized conserved protein [Function unknown].	3.01267e-154
NZ_CP009459.1\|WP_039305589.1\|4547554_4548754_-\|S-methyl-5-thioribose-kinase	gnl\|CDD\|236561	PRK09550, mtnK, methylthioribose kinase; Reviewed.	0
NZ_CP009459.1\|WP_039305612.1\|4557615_4559676_+\|polyphosphate-kinase-1	gnl\|CDD\|274734	TIGR03705, poly_P_kin, polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2. [Central intermediary metabolism, Phosphorus compounds].	0
NZ_CP009459.1\|WP_039305572.1\|4541194_4542274_-\|oxidoreductase	gnl\|CDD\|182570	PRK10586, PRK10586, putative oxidoreductase; Provisional.	0
NZ_CP009459.1\|WP_039305575.1\|4542450_4543956_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP009459.1\|WP_039306456.1\|4555766_4556804_+\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP009459.1\|WP_039305601.1\|4556803_4557442_+\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	2.34821e-125
NZ_CP009459.1\|WP_039296041.1\|4553544_4554831_-\|uracil-permease	gnl\|CDD\|236744	PRK10720, PRK10720, uracil transporter; Provisional.	0
NZ_CP009459.1\|WP_039305598.1\|4551553_4552714_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|181642	PRK09082, PRK09082, methionine aminotransferase; Validated.	0
NZ_CP009459.1\|WP_008459367.1\|4554916_4555543_-\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	3.928e-136
NZ_CP009459.1\|WP_039305569.1\|4539683_4540820_+\|NADH:flavorubredoxin-reductase-NorW	gnl\|CDD\|179902	PRK04965, PRK04965, NADH:flavorubredoxin reductase NorW.	0
NZ_CP009459.1\|WP_039305565.1\|4538235_4539687_+\|anaerobic-nitric-oxide-reductase-flavorubredoxin	gnl\|CDD\|235475	PRK05452, PRK05452, anaerobic nitric oxide reductase flavorubredoxin; Provisional.	0
NZ_CP009459.1\|WP_039305582.1\|4544976_4546041_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380528	cd06305, PBP1_methylthioribose_binding-like, similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. Proteins similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.	7.22649e-123
NZ_CP009459.1\|WP_039305595.1\|4550720_4551404_-\|acireductone-synthase	gnl\|CDD\|319768	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv. Oryzae enolase-phosphatase Xep. Enolase-phosphatase E1 (also called MASA) is a bifunctional enolase- phosphatase which promotes the conversion of 2,3-diketo-5-methylthio-1-phosphopentane to 1,2-dihydroxy-3-keto-5-methylthiopentene anion (an aci-reductone) in the methionine salvage pathway. The catalytic reaction is carried out continuously by enolization and dephosphorylation, and the enolase activity cannot be classified as typical enzymatic enolization. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.49997e-118
NZ_CP009459.1\|WP_039305592.1\|4548861_4549887_+\|S-methyl-5-thioribose-1-phosphate-isomerase	gnl\|CDD\|273112	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA. [Amino acid biosynthesis, Aspartate family].	4.11415e-154
NZ_CP009459.1\|WP_085938907.1\|4552745_4553471_-\|DnaA-inactivator-Hda	gnl\|CDD\|181224	PRK08084, PRK08084, DnaA inactivator Hda.	4.31674e-176
NZ_CP009459.1\|WP_039305578.1\|4543952_4544948_+\|ABC-transporter-permease	gnl\|CDD\|119321	cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.	7.05302e-70

>NZ_CP009459.1|WP_039305592.1|4548861_4549887_+|S-methyl-5-thioribose-1-phosphate-isomerase
MHNLKTTSLEVRDNQLWILDQQALPQQKNWLPAHTVSQLVAHIHALSVRGAPLIGLSASLLLALLAEQGLTKSQLAEALETLRASRPTAVNLMNNLDRMKQALTQENVVAALEEEALRLVAEDKVLCDNIARAGAALVKPGSRLLTHCNTGGLATAGVGTALGVIQRAFNEGNVASVWVDETRPLLQGGRLTAWELGELGIPYQLICDSMAASLMAKKQVDAIWVGADRIAANGDVANKIGTYSLAVLAHYHDIPFYVAAPHTTLDRNCPNGEAIPIEQRAASEVTGVAGSFGSVQWAPDNASVYNPAFDVTPAELISGWILDTGVVTPEQVRDGVFLPKK
>NZ_CP009459.1|WP_039305589.1|4547554_4548754_-|S-methyl-5-thioribose-kinase
MSHYRTFTAADAVAYAQQFGGLQTPSELVEAQEVGDGNLNLVFKIFDSQGVSRTIVKQALPYVRCVGESWPLTLDRARLEAQTLVEHYQHSPEHTVNVVHYDPDLAVMVMEDLSSHRIWRGELVKGVYYPQAASQLGEYLAKALFHTSDFYLHPHDKKALVARFINPEMCEITEDLFFNDPYQIHERNNYPAALEQQVAALRSDSDLKLAVALLKHKFFSSAEALLHGDIHSGSIFVAEGSLKAIDAEFGYVGPVGFDLGTAIGNLLLNYCALPGHFGPRDAASQREQRLKDIQELWLSFSERFTALAREKTRDAALATEGYVEHYLQKVWVDAVGFCGTELIRRSVGLSHVADLESIEDEATRQACVSHAIELGKFLILIAGQVDSVDEFIARVRQKG
>NZ_CP009459.1|WP_039305586.1|4546052_4547291_+|hypothetical-protein
MALPQPEYSRNMRLIGHSDQGGKPDGVQLMVHRGYAYIGHMVSQGFSIIDVRDPKNPKAAGFVPAPPGTWNIHLQAHDDLLLVINARDLFADVRFADEKVYYTKSVGETVRDVQDKGWSAGLRIFDISTPDKPKEISFLSLTGIGIHRCWYVGGRWAYVSALIDGFSDYIFLTIDLADPRNPQVAGNWWLPGMNTAAGEQPTWPEGKRYALHHAIISGDTAYASWRDGGLTLLDVSDRTQPQLISHRNWSPPFGGGTHTALPLPNRDLLVVLDEAVLDNQEDGEKLIWLFDIRDPSNPVSISTFPQPDEIDYVAKGAHFGPHNLHENRPGSFISDTLIFATYQNAGVRAYDISNPYRPLETGALVPAAPEKMMDTRPGRPRVIQSCDVFVDAQGIVYSTDYNGGLSIIEYLG
>NZ_CP009459.1|WP_039305582.1|4544976_4546041_+|sugar-ABC-transporter-substrate-binding-protein
MKKLTTSLLALSLLAALPGHAATPTPVPEKIAAHDGPIRIAVIRNLGSDDNTTQFVAGAVQQAKKLGFKVSTFLSNGDDARFQDFVNQAISQKYDGIILSQGRDPYSTELVKKAVAAGIAVSVFDTAVNGTIPGVTVTQQDDASLTSLSFGQLVKDFNGKANIIKLWVAGFPPMERRQAAYQELLKANPGIKELESIGAVSSDVQGDTANKVGAVLAKYPKGKIDAIWGTWDAFSQGAYKALQENGRTEIKLYSIDVSNQDIQLMREANSPWKVSVAVDPKLIGATNVRLVAYKIAGEQTPATYDFKAAAIPQALLASQPGPVNVTSLGKIIPGWGQTDDFIAPWFATLEAKNK
>NZ_CP009459.1|WP_039305578.1|4543952_4544948_+|ABC-transporter-permease
MSKALSLKASASGRQQFFDFLYKWGMLLTVVALVALFGIASDSFLEPNNIINILRSIAIVTVIAIGVSISLTVGGFDLSVGSTASLANALVISLFVWHGFGTTEAILITLVLCTLVGLFNAFLIVVLKIPDMLATLASLFVIQGVAMTYSYGGSITKNMVLPSGDMAEGTIPAAFGLLGQVPTIVIIMLVVTLVAQLALSLTKHGRRMYAIGGNPEAARLSGIRTTRYRVAAYVLASLLAGLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVLQNGLVMLSVPYYAMDIIKGLVLAAALAITYIQRR
>NZ_CP009459.1|WP_039305575.1|4542450_4543956_+|sugar-ABC-transporter-ATP-binding-protein
MTTLNRLEMREISIAFAGFNALSQVNFRLDGGSVHALTGANGAGKSTLMAVLSGAHESYQGEVLIDGETVTIRNPRDAKRLGIHLVQQEVDVALVPGLSVAENIMLDKLAETGHVYRWSKIYRQAREALAQLDVNIDVKKRIEQCTLAEKQQILLARALSHHCRFLILDEPTAPLDSQESEHLFRVVQRLQSSGIGVVFISHRIHELKAICDQMTVLRDGKLVDSGPMGHLSGEEIVEKMLGHQLDDIYPPHRPPVEGDTLLAVEGLHDDALLRDISLRLRKGEILGIAGLAGAGKTELCKALFGATRSTLERGELKGKTWRPTDPADSVTRGVVLVPEERRKEGIFIDESVTMNLAVSADSQFTRWGLFDYRKARRWAEETIQRLGIRTSGPAQTLRRLSGGNQQKVSIGKWLRNEADVLIFDEPTKGVDIKAKTDLFVLIDQLARRGKGVIYASGEFAELVGLCDRICVLWDGRIVAELDGHQATEETLLLYSTGGTPA
>NZ_CP009459.1|WP_039305572.1|4541194_4542274_-|oxidoreductase
MTSTAIRVVTGPANYYSHPGSLARLTEFYSEDQLNNAVWIYGERAFEAARPFLPAAFSLPGAKHIQFGGHCSESDVQRLVVESGERQVVIGLGGGALLDTVKVVARRLNAPVVAIPTIAATCAAWTPLSVWYNDAGQALRFEIFNDANHLVLVEPEIILRAPQEYLLAGIGDTLAKWYEAVVLSPQPENLPLTVRLGIGAALAIRDVLLERSEQALEDQRQGKLSQAFLDVVEAIIAGGGMVGGLGERYTRVAAAHAVHNGLTTLPQTDRFLHGTKVAYGILVQSALLGQDDVLAQLTQAYKRFNLPTKLAQLDVDIHHRADLDKVITRTLQAGESIHALLVALSPESLLAALEKVEAL
>NZ_CP009459.1|WP_039305569.1|4539683_4540820_+|NADH:flavorubredoxin-reductase-NorW
MNKGIVIIGSGFAARQLVKNIRKHSADVPIRLIAADSADEYNKPDLSHVISLNQRAEAMTRQQAGAFAEQFNLTLHANSWVSSLDPNNKLVNCGERQWRYDKLVLATGSAALLPPVSGKELMTTLNSQQEYQACETRLRDARRVMILGGGLIGSELAMDFCRAGKEVVLVDNASHLMASLLPAEVSGRLQSRLNEMGVELLFNQRLEAVSQMESGMCATLNNGRNLHVDAVVSAIGLRPNVGLAQHAGLEVNRGIQVNSQLQTSDPDIYALGDCAEIDGKVLPFLQPIQLSAMTLAKNLLGASDALSLPAMLVKVKTPEMPLHLAGETQRRDLIWQITASPQGLIAKGMDAAQQLRAFIVSEEYMKQAFSLVRELQLG
>NZ_CP009459.1|WP_039305565.1|4538235_4539687_+|anaerobic-nitric-oxide-reductase-flavorubredoxin
MAIQVKNNIQWVGQRDWEVRDFHGTEYKTLRGSSYNSYLIREEKTVLIDTVDHKFSREFVQNLEREIDLNTLDYIIINHAEEDHAGALTELMSRIPHTPIYCTANGIDSINGHHHHPEWNFKVVKTGDSLDIGNGKQLIFVETPMLHWPDSMMTYLTGDAVLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNLPVEMIATSHGVVWRDNPTQIVELYLKWAADYQEDRITLFYDTMSNNTRMMADAIAQGIHEVDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGTSTMNNVMMPKIAGLVEEITGLRFRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDGNALELCREHGREIARQWALSPLPVDQDATSVAPLAEEATAESTSAGLGPCMQCSVCQWIYDPTLGEPMQAVEPGTPWSEVPDSFLCPECSLGKDVFDELATEAK
>NZ_CP009459.1|WP_039305562.1|4536472_4538014_-|nitric-oxide-reductase-transcriptional-regulator-NorR
MSLSMSSLAAIAIELQSGISHSDRFTRVIRTLRKLLGGDATALLRYESRHFYPLAIDGLAIDVLGRRFAVDAHPRLEAIARAGDVVRFPADSELPDPYDGLIPDHEDLKVHACLGLPLFADQTLIGALTVDGMDPYQFDGFSDEELRLIGVLASGALNNALLLEQLEKQTPEGTVQPAIAREAAGEMIGRSAGIIQLKKEIEIVASSDLNVLITGETGVGKELVARAIHAGSARVASPLVYLNCAALPESVAESELFGHVKGAFTGAIHHRTGKFEMADNGTLFLDEIGELPLALQAKLLRVLQYGDIQRVGDDRSQRVDVRVLAATNRDLRQQVLAGEFRADLFHRLSVFPLHVPPLRERGKDIVLLAGFFCEQSRMKMGLKQIVLSESARMLLAQYGWPGNIRELEHAIYRAIVLARAGYPQGELVLQPQHFQISGQPDVVAHEPESPPVDTHFVSLREATDAFQRDRILESLARHGNNWAASARQLGVDVANLHRLAKRLGVKSPRGSTS
>NZ_CP009459.1|WP_008459357.1|4550181_4550724_-|acireductone-dioxygenase
MSALTIFTDTEAKEPVWHSTDAQEIREQLNAKDVRFERWEANQDLGNDPTPETVIHAYQHAIDKLVAEKGYQSWDVISLRADNPQKDVLRTKFLSEHTHGEDEVRFFVEGAGLFCLHLDDKVYQILCEKNDLISVPAGTPHWFDMGSEPHFTAIRIFDNPEGWVAHFTGDAIADAYPRLP
>NZ_CP009459.1|WP_039305595.1|4550720_4551404_-|acireductone-synthase
MIRAIVTDIEGTTSDIRFVHNILFPYARERLAGFVREQQNEIAPILNDLRAEINEPQADIERLIETLFSFMDVDRKSTALKALQGLIWRDGYVNGDFTGHLYDDVLPALKAWKQQGIALYVYSSGSVAAQKLLFGYSDAGNITELFSGYFDTHVGAKREAQSYRNIAAEIGVAPEALLFLSDIHQELDAAREAGWQTVQLIRGEADDVSRHRQVNRFDHINLESFSS
>NZ_CP009459.1|WP_039305598.1|4551553_4552714_+|pyridoxal-phosphate-dependent-aminotransferase
MSHSPLIPESKLPALGTTIFTQMSALAQQHNAINLSQGFPDFDGPRYLQERLAFHVSQGANQYAPMTGVPALREAIAEKTEALYGHKPDANTDITVTAGATEALYAAITALVRPGDEVICFDPSYDSYAPAVTLSGGILKRIALQPPHFRVDWQEFTALLSDKTRLVILNTPHNPSATVWRKSDFAALWQAIAQHEVYVLSDEVYEHICFDEEGHASVLAHPQLRERAISVSSFGKTFHMTGWKVGYCVAPAAISAELRKVHQYLTFAVNTPAQLAIADMLRAEPEHYRELPEFYRARRDRFVEALADSRFEILPCEGTYFLLADYSAISDLDDVSFCQWLTKEVGVAAIPLSVFCADTFPHKLIRLCFAKQEATLDAAAERLRQV
>NZ_CP009459.1|WP_085938907.1|4552745_4553471_-|DnaA-inactivator-Hda
MPVMVEVLLNTPAQLSLPLYLPDDETFASFWPGDNPSLLAALQAVLRQDHSGYIYFWSREGGGRSHLLHAACAELSQRGEAVGYVPLDKRTWFVPEVLDGMEQLSLVCIDNIECVAGDEPWEMAIFNLYNRILESGKTRLLITGDRPPRQLNLQLPDLASRLDWGQIYKLQPLSDDDKLQALQLRSRLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILSL
>NZ_CP009459.1|WP_039296041.1|4553544_4554831_-|uracil-permease
MTRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPILFHINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFCIVALIVKKAGTGWLDVMFPPAAMGAIVAVIGLELAGVAANMAGLLPAEGASPDSTTIIISLVTLAVTVFGSVLFRGFMAIIPILIGVLAGYALSFAMGVVDVTPIREAHWFALPTFYTPRFEWFAIFTILPAALVVIAEHVGHLVVTANIVKKDLIRDPGLHRSMFANGISTVFSGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIIAILLSCVGKLAAAIQIIPVPVMGGVSLLLYGVIGASGIRVLIESKVDYSKAQNLILTSVILIIGVSGAKVHIGAAELKGMALATIVGVGLSLIFKLISILRPEEVVLDAKDNDAQA
>NZ_CP009459.1|WP_008459367.1|4554916_4555543_-|uracil-phosphoribosyltransferase
MKIVEVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATADLETEKVTIEGWNGPVEVDQIKGKKITVVPILRAGLGMMEGVLENVPSARISVVGVYRDEETLQPVPYFQKLVSNIEERMALVVDPMLATGGSMIATIDLLKKAGCTSIKVLVLVAAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK
>NZ_CP009459.1|WP_039306456.1|4555766_4556804_+|phosphoribosylformylglycinamidine-cyclo-ligase
MTDKTSLSYKDAGVDIDAGNALVDRIKGVVKKTRRPEVMGGLGGFGALCALPQKYREPVLVSGTDGVGTKLRLAMDLKRHDAIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDTAASVITGIAEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFCVGVVEKSEIIDGSKVADGDVLIALGSSGPHSNGYSLVRKVLEVSGTDPLTTELEGKPLADHLLEPTRIYVKNILELIENVDVHAIAHLTGGGFWENIPRVLPDNTQAVIAESSWQWPAVFNWLQQAGNISRHEMYRTFNCGVGMVIALPAAEADKAVELMQAKGEKAWKIGIIKASDSEERVVIE
>NZ_CP009459.1|WP_039305601.1|4556803_4557442_+|phosphoribosylglycinamide-formyltransferase
MKHIVVLISGNGSNLQAIIDACQQKKINGTISAVFSNKADAFGLERAREAGIPTHALAASEFASREAFDRQLMQEIDAYAPDVVVLAGYMRILSPAFVARYSGRLLNIHPSLLPKYPGLHTHRQVLENGDEEHGTSVHFVTDELDGGPVILQAKVPVFEGDDEDEITARVQHQEHAIYPLVVSWFLDDRLKMRHNAAWLDGVQLPPQGHAAE
>NZ_CP009459.1|WP_039305612.1|4557615_4559676_+|polyphosphate-kinase-1
MGQDKLYIEKELSWLSFNERVLQEAADKLNPLIERMRFLGIYSNNLDEFYKVRFAELKRRILISEEQGSPSNQRHLLNKIQARVLKADQEFDSLYNELLLEMARNQIFLINERQLSENQQSWLRSYFKHQLRPHITPILINRDTDLVQFLKDDYTYLAVEIIRGDSIRYALLEIPSDKVPRFVNLPPEAPRRRKPMILLDNILRYCLDEIFKGFFDYDALNAYSMKMTRDAEYDLVTEMESSLLELMSSSLKQRLTAEPVRFVYQRDMPDAMVEMLRDKLTISNYDSIIPGGRYHNFKDFIGFPNVGKANLVNKPLPRLRHIWFDKFRNGFDAIRERDVLLYYPYHTFEHVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHNGKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGLKIHAKLFLISRMEGEEIVRYAHIGTGNFNEKTARLYTDYSLLTADARITNEVRRVFNFIENPYRPVTFDYLLVSPQNSRRLLYDLVDREIKNAQNGQPAGITLKLNNLVDKGLVDRLYAASSAGVKVNLLIRGMCSLIPELDGISDNIRVQSIVDRYLEHDRVYIFENGGDKKVFLSSADWMTRNIDYRIEVAVPVLDPRLKQRMLDIIDIQLNDTVKARIIDKELSNRYVSRGNRRKVRSQLAIYDYIKTLEQPD
>NZ_CP009459.1|WP_039305615.1|4559699_4561241_+|exopolyphosphatase
MPISNHAPRPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNKLSEEAMERGLSCLALFAERLQGFAADNVCIVGTHSLREATNAAEFLKRAEKVIPYPIEIIPGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGEDFEPMLVESRRMGCVSFAQNFFPGGVISPESFKRARMAAIQKLETLAWQYRLQGWKVAMGASGSIKAAHEVLIEMGEKDGMITPERLDMLQQEVLKFKTFDSLSLPGLSEERKAVFVPGLAILCGVFDALAIRELRLSDGALREGVLYEMEGRFRHQDIRIRTAQSLAEQYHIDSDQARRVLETVELLYQQWETQNHKLANPQMAALLKWAAMLHEVGLSINHSGMHRHSAYILQNSNLPGFNQEQQVLMASLVRYHRKAIKLDDLPRFTLFKKKQFLPLIQLIRLATLLNNQRQATTTPPTLVLETDDNHWTLRFPHDWFSQNTLVQLDLEREQLYWESMTGWKLTIEEEAEAALSA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009459_6	6.1\|4549970\|25\|NZ_CP009459\|CRISPRCasFinder	4549970-4549994	25	NZ_CP032696	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525b, complete sequence	191312-191336	5	0.8

1. spacer 6.1|4549970|25|NZ_CP009459|CRISPRCasFinder matches to NZ_CP032696 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525b, complete sequence) position: , mismatch: 5, identity: 0.8

ctgagggagaaaaaacgacatgcgg	CRISPR spacer
gtgaggcagaaaaaacgacatgttt	Protospacer
 ***** ***************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12176 : 31719

Salmonella_phage(29.17%)

tail,lysis

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039297296.1\|12176_12734_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	2.0e-85	84.7
WP_071842800.1\|12763_13243_+	hypothetical protein	A0A0F7LCR3	Escherichia_phage	5.7e-36	47.7
WP_039297299.1\|13242_13842_+\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	2.8e-48	49.0
WP_039306461.1\|13822_14008_-	hypothetical protein	NA	NA	NA	NA
WP_081942985.1\|14021_14708_-	hypothetical protein	A0A0M3ULD8	Salmonella_phage	4.3e-29	53.6
WP_039297303.1\|14707_15388_-	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	1.3e-97	76.1
WP_039297306.1\|15384_16584_-	bacteriophage protein	A0A0M4RD32	Salmonella_phage	2.0e-154	71.4
WP_039297308.1\|16584_16935_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.0e-30	57.3
WP_039297311.1\|16931_17615_-	translation initiation factor IF-2	A0A0M5M1K7	Salmonella_phage	1.6e-60	55.4
WP_039297313.1\|17659_18661_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	1.9e-73	40.7
WP_039297315.1\|18671_18980_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	7.1e-24	53.0
WP_039297317.1\|18989_19568_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	1.4e-33	45.5
WP_039297320.1\|19567_21319_-	hypothetical protein	A0A0M4REK7	Salmonella_phage	4.5e-62	34.7
WP_052045528.1\|21308_21497_-	lytic transglycosylase	A0A2H4J1A2	uncultured_Caudovirales_phage	2.2e-07	50.0
WP_039297322.1\|21496_21910_-	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	5.2e-38	58.2
WP_039297325.1\|21913_22354_-	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	6.2e-45	63.7
WP_039297328.1\|22364_23504_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	4.7e-129	62.0
WP_039297331.1\|23507_24047_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	2.0e-37	41.9
WP_039305791.1\|24091_24970_-	triacylglycerol lipase	NA	NA	NA	NA
WP_039297332.1\|25020_25473_-\|lysis	lysis protein	Q2A0C4	Sodalis_phage	1.4e-20	40.8
WP_039297335.1\|25469_25961_-	lysozyme	A0A1R3Y5W5	Salmonella_virus	2.3e-40	50.0
WP_039297337.1\|25960_26260_-	hypothetical protein	O64361	Escherichia_phage	3.3e-18	46.9
WP_039297341.1\|26317_26653_-	antitermination protein	Q716D8	Shigella_phage	1.1e-14	46.4
WP_008459494.1\|26939_27686_-	helix-turn-helix transcriptional regulator	A0A2I6PIE7	Escherichia_phage	1.9e-46	45.9
WP_039297344.1\|27947_28208_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	4.2e-17	50.0
WP_008459499.1\|28204_28585_-	holo-ACP synthase	NA	NA	NA	NA
WP_039297347.1\|28584_29316_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_039297349.1\|29390_30128_-	DNA repair protein RecO	NA	NA	NA	NA
WP_039297352.1\|30133_31042_-	GTPase Era	NA	NA	NA	NA
WP_008459505.1\|31038_31719_-	ribonuclease III	A0A0P0YM82	Yellowstone_lake_phycodnavirus	4.3e-21	29.7

DBSCAN-SWA_2

1698782 : 1740136

Salmonella_phage(78.05%)

head,terminase,tail,capsid,portal,plate,lysis,transposase,integrase,tRNA

attL 1697395:1697441|attR 1733793:1733839

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1697395:1697441	attL	NA	NA	NA	NA
WP_039300029.1\|1698782_1699811_-\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	8.3e-117	59.9
WP_039300032.1\|1699814_1700435_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	2.8e-35	37.4
WP_039300035.1\|1700534_1700771_+	hypothetical protein	NA	NA	NA	NA
WP_039300037.1\|1700805_1701315_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	3.8e-70	77.5
WP_071842863.1\|1701322_1701523_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	4.2e-25	80.3
WP_039300040.1\|1701486_1701828_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	1.7e-42	76.1
WP_039300043.1\|1701894_1702122_+	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	1.7e-19	69.3
WP_039300047.1\|1702121_1702349_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	7.6e-31	84.0
WP_039300050.1\|1702476_1703349_+	DNA adenine methylase	E5G6L8	Salmonella_phage	8.1e-105	67.9
WP_039300056.1\|1704178_1706455_+	replication endonuclease	A0A0M4RTM8	Salmonella_phage	2.5e-267	62.6
WP_039300059.1\|1706782_1707247_-	hypothetical protein	NA	NA	NA	NA
WP_039300062.1\|1707243_1707618_-	hypothetical protein	NA	NA	NA	NA
WP_156107014.1\|1707995_1709115_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	5.1e-51	43.7
WP_032678736.1\|1709405_1709594_+	hypothetical protein	A0A1S6L006	Salmonella_phage	1.5e-24	93.5
WP_039300077.1\|1709604_1709838_+	DinI family protein	A0A1S6L014	Salmonella_phage	4.3e-29	85.5
WP_039300081.1\|1710123_1710318_+	hypothetical protein	NA	NA	NA	NA
WP_039300085.1\|1710327_1711116_+	hypothetical protein	NA	NA	NA	NA
WP_039300087.1\|1711371_1712070_+	DUF4145 domain-containing protein	NA	NA	NA	NA
WP_156107015.1\|1712078_1713122_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	2.6e-182	90.4
WP_039300093.1\|1713118_1714885_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	94.2
WP_039300096.1\|1715027_1715852_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	3.2e-111	82.7
WP_039300099.1\|1715868_1716933_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	1.3e-178	89.5
WP_039300102.1\|1716936_1717587_+	hypothetical protein	A0A1S6KZX1	Salmonella_phage	1.5e-92	79.2
WP_039300106.1\|1717681_1718146_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.8e-71	85.7
WP_039300109.1\|1718145_1718349_+\|tail	tail protein X	E5G6M9	Salmonella_phage	3.0e-31	89.6
WP_039300112.1\|1718351_1718567_+	hypothetical protein	E5G6N0	Salmonella_phage	3.3e-12	50.7
WP_039300115.1\|1718547_1719057_+	lysozyme	A0A1S6KZY9	Salmonella_phage	1.7e-86	91.1
WP_039300118.1\|1719061_1719439_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	3.1e-45	75.2
WP_039300120.1\|1719438_1719864_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	9.5e-59	85.1
WP_039300123.1\|1719959_1720391_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.6e-69	89.5
WP_039300126.1\|1720383_1720833_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.3e-53	71.1
WP_052045557.1\|1720806_1721616_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_039300129.1\|1721746_1722382_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	3.7e-83	73.8
WP_039300131.1\|1722378_1722738_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	7.3e-44	72.9
WP_039300135.1\|1722724_1723633_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	3.1e-131	83.1
WP_039300138.1\|1723625_1724168_+\|tail	phage tail protein I	Q858V5	Yersinia_virus	8.3e-76	74.9
WP_039300141.1\|1726122_1726692_+\|tail	tail fiber assembly protein	U5N0T1	Enterobacteria_phage	4.6e-24	43.7
WP_039300144.1\|1726856_1728029_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	8.1e-201	88.2
WP_039300146.1\|1728038_1728554_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	5.9e-79	84.8
WP_039300148.1\|1728608_1728911_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	6.8e-35	82.0
WP_071842818.1\|1728925_1729045_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.7e-13	89.7
WP_039300150.1\|1729037_1731785_+\|tail	phage tail tape measure protein	Q9ZXK0	Pseudomonas_virus	3.1e-158	40.5
WP_039300152.1\|1731781_1732267_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	5.3e-66	78.8
WP_039300155.1\|1732263_1733361_+	phage late control D family protein	E5G6Q3	Salmonella_phage	1.3e-171	84.7
WP_071842819.1\|1733436_1733655_+	levansucrase regulator	Q53ZE7	Salmonella_virus	7.5e-28	76.4
WP_039300159.1\|1733994_1734501_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
1733793:1733839	attR	NA	NA	NA	NA
WP_039300162.1\|1734763_1736608_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
WP_039306006.1\|1736758_1738504_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.9e-77	39.1
WP_001144069.1\|1738657_1738873_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_039300165.1\|1739122_1740136_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	4.3e-110	59.8

DBSCAN-SWA_3

2515290 : 2524874

Dickeya_phage(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039301527.1\|2515290_2516406_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	39.8
WP_039301529.1\|2516402_2518349_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	5.0e-38	41.4
WP_008461102.1\|2518426_2518648_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	3.6e-17	62.7
WP_008461103.1\|2518971_2519292_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.4e-14	47.2
WP_008461105.1\|2519319_2521593_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	4.3e-166	42.5
WP_002211347.1\|2521690_2521909_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_039301531.1\|2522194_2522890_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_039301533.1\|2523152_2524874_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	F2Y2R6	Organic_Lake_phycodnavirus	8.7e-18	26.1

DBSCAN-SWA_4

4040366 : 4052183

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039304607.1\|4040366_4041377_-	NAD-dependent epimerase/dehydratase family protein	K7Y9E1	Megavirus	8.3e-45	38.8
WP_039304610.1\|4041415_4042780_-	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_039304613.1\|4042772_4043897_-	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2P1ELT3	Moumouvirus	3.7e-25	28.5
WP_039304616.1\|4043898_4044987_-	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2K9L0G1	Tupanvirus	6.9e-29	31.6
WP_039304620.1\|4044996_4045770_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_039304623.1\|4045820_4046366_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.5e-56	60.9
WP_039304626.1\|4046369_4047248_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	8.7e-107	64.1
WP_039304628.1\|4047296_4048196_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.5e-26	33.3
WP_039304630.1\|4048192_4049278_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.7e-99	52.8
WP_039304633.1\|4049684_4050584_-	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	1.0e-49	41.8
WP_039304636.1\|4050758_4052183_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.1e-18	28.3

DBSCAN-SWA_5

4650339 : 4658362

Salmonella_phage(42.86%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039297296.1\|4650339_4650897_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	2.0e-85	84.7
WP_039306461.1\|4651320_4651506_+	hypothetical protein	NA	NA	NA	NA
WP_039305771.1\|4652086_4652872_-\|tail	tail fiber protein	M1TAS6	Escherichia_phage	3.6e-35	42.6
WP_039297303.1\|4652871_4653552_-	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	1.3e-97	76.1
WP_039297306.1\|4653548_4654748_-	bacteriophage protein	A0A0M4RD32	Salmonella_phage	2.0e-154	71.4
WP_039297308.1\|4654748_4655099_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.0e-30	57.3
WP_039297315.1\|4656832_4657141_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	7.1e-24	53.0
WP_156107054.1\|4657728_4657950_-	hypothetical protein	NA	NA	NA	NA
WP_039305772.1\|4658098_4658362_-	hypothetical protein	A0A0M4REK7	Salmonella_phage	2.7e-08	35.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009459

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection