CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009283	Paenibacillus sp. FSL R7-0273, complete genome	14 crisprs	WYL,csa3,cas14j,DEDDh,cas3,DinG,TnsE_C	0	4	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009283_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009283_1

136276-136383

Orphan

Consensus_repeat	Method
GGTCGGGGGTTCGATCCCCTCTGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009283_1

>merge|NZ_CP009283|1|136276-136383|CRISPRCasFinder
GGTCGGGGGTTCGATCCCCTCTGCCGCTACCATATTCCCGGAGGCTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGGGGTTCGATCCCCTCAGCC

>NZ_CP009283|1|1|136276-136383|CRISPRCasFinder
GGTCGGGGGTTCGATCCCCTCTGCC	GCTACCATATTCCCGGAGGCTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAG
GGTCGGGGGTTCGATCCCCTCAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009283.1\|WP_039869014.1\|143270_143795_+\|acyltransferase	unknown	unknown	gnl\|CDD\|100053
NZ_CP009283.1\|WP_039868996.1\|127003_128779_+\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|235505
NZ_CP009283.1\|WP_039868990.1\|123508_124864_+\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|236490
NZ_CP009283.1\|WP_039868998.1\|128827_129139_+\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_CP009283.1\|WP_039869010.1\|140630_141569_+\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
NZ_CP009283.1\|WP_039869002.1\|130003_130261_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039868994.1\|126279_126477_+\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|376487
NZ_CP009283.1\|WP_039869017.1\|144112_145330_+\|acyltransferase	unknown	unknown	gnl\|CDD\|376607
NZ_CP009283.1\|WP_039869021.1\|146633_148184_-\|gluconokinase	unknown	unknown	gnl\|CDD\|130381
NZ_CP009283.1\|WP_039869005.1\|137006_137963_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223566
NZ_CP009283.1\|WP_039869006.1\|138074_139169_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379258
NZ_CP009283.1\|WP_039869012.1\|141583_142612_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
NZ_CP009283.1\|WP_039878064.1\|142621_143263_+\|pyrophosphatase-PpaX	unknown	unknown	gnl\|CDD\|237336
NZ_CP009283.1\|WP_039868988.1\|122122_123376_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|183779
NZ_CP009283.1\|WP_039869000.1\|129175_129772_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP009283.1\|WP_039869007.1\|139278_140400_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NZ_CP009283.1\|WP_039869019.1\|145387_146539_+\|acyltransferase	unknown	unknown	gnl\|CDD\|376607
NZ_CP009283.1\|WP_039869004.1\|130292_130556_+\|pro-sigmaK-processing-inhibitor-BofA	unknown	unknown	gnl\|CDD\|377835
NZ_CP009283.1\|WP_039868992.1\|124889_126167_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|100105
NZ_CP009283.1\|WP_039868986.1\|121088_121943_+\|class-II-fructose-1,6-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|169068

Protein	Function_ID	Function_description	E-value
NZ_CP009283.1\|WP_039869014.1\|143270_143795_+\|acyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	6.68224e-30
NZ_CP009283.1\|WP_039868996.1\|127003_128779_+\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|235505	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_CP009283.1\|WP_039868990.1\|123508_124864_+\|transcription-termination-factor-Rho	gnl\|CDD\|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0
NZ_CP009283.1\|WP_039868998.1\|128827_129139_+\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	1.22194e-43
NZ_CP009283.1\|WP_039869010.1\|140630_141569_+\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.3045e-168
NZ_CP009283.1\|WP_039868994.1\|126279_126477_+\|50S-ribosomal-protein-L31	gnl\|CDD\|376487	pfam01197, Ribosomal_L31, Ribosomal protein L31.	3.47467e-35
NZ_CP009283.1\|WP_039869017.1\|144112_145330_+\|acyltransferase	gnl\|CDD\|376607	pfam01757, Acyl_transf_3, Acyltransferase family. This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long.	1.64653e-15
NZ_CP009283.1\|WP_039869021.1\|146633_148184_-\|gluconokinase	gnl\|CDD\|130381	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. [Energy metabolism, Sugars].	0
NZ_CP009283.1\|WP_039869005.1\|137006_137963_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	1.79634e-49
NZ_CP009283.1\|WP_039869006.1\|138074_139169_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|379258	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain. This helix-turn-helix domain is often found at the C-terminus of PucR-like transcriptional regulators such as Bacillus subtilis pucR and is likely to be DNA-binding.	1.88726e-17
NZ_CP009283.1\|WP_039869012.1\|141583_142612_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	4.94061e-104
NZ_CP009283.1\|WP_039878064.1\|142621_143263_+\|pyrophosphatase-PpaX	gnl\|CDD\|237336	PRK13288, PRK13288, pyrophosphatase PpaX; Provisional.	9.5369e-86
NZ_CP009283.1\|WP_039868988.1\|122122_123376_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|183779	PRK12830, PRK12830, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed.	0
NZ_CP009283.1\|WP_039869000.1\|129175_129772_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	3.24235e-124
NZ_CP009283.1\|WP_039869007.1\|139278_140400_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	3.51166e-177
NZ_CP009283.1\|WP_039869019.1\|145387_146539_+\|acyltransferase	gnl\|CDD\|376607	pfam01757, Acyl_transf_3, Acyltransferase family. This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long.	9.02519e-18
NZ_CP009283.1\|WP_039869004.1\|130292_130556_+\|pro-sigmaK-processing-inhibitor-BofA	gnl\|CDD\|377835	pfam07441, BofA, SigmaK-factor processing regulatory protein BofA. This family contains the sigmaK-factor processing regulatory protein BofA (Bypass-of-forespore protein A) (approximately 80 residues long). During sporulation in Bacillus subtilis, transcription is controlled in the developing sporangium by a cascade of sporulation-specific transcription factors (sigma factors). Following engulfment, processing of sigmaK is inhibited by BofA. It has been suggested that this effect is exerted by alteration of the level of the SpoIVFA protein.	0.00476136
NZ_CP009283.1\|WP_039868992.1\|124889_126167_+\|radical-SAM-protein	gnl\|CDD\|100105	cd01335, Radical_SAM, Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme of the biosynthesis of molybdopterin.	3.86602e-10
NZ_CP009283.1\|WP_039868986.1\|121088_121943_+\|class-II-fructose-1,6-bisphosphate-aldolase	gnl\|CDD\|169068	PRK07709, PRK07709, fructose-bisphosphate aldolase; Provisional.	5.90181e-168

>NZ_CP009283.1|WP_039869004.1|130292_130556_+|pro-sigmaK-processing-inhibitor-BofA
MRAVALGILIGSVILLGLIVFRKKLGWAWLTLFGSHLVLAALGIYIVNFSGLLTEVYIPLNPATIGTVTVLGLPGVLMLLGLKITLF
>NZ_CP009283.1|WP_039869002.1|130003_130261_+|hypothetical-protein
MRWWGNARQEEGVKSLNQLNLDEDWRVFHEVRNAQMEWERAHLMFDEALGQDQIDYAIFILEAAERKYQIHLKHAKSLGLDRTRM
>NZ_CP009283.1|WP_039869000.1|129175_129772_+|recombination-protein-RecR
MYYPEPLAKLIDAFTRLPGIGPKTAARLAFHVLHMKEDEVIDFAKALVSVKRNLHYCSVCCNITDTDPCRICQDKTRDASVICVVQESKDLVAIERTKEFDGYYHVLQGAISPMEGIGPDDIRLKELLTRLSDERVKELIMATNPNIEGEATAMYISRLVRPFEIKITRIAHGLPVGGDLEYADEVTLSKALEGRREL
>NZ_CP009283.1|WP_039868998.1|128827_129139_+|YbaB/EbfC-family-nucleoid-associated-protein
MNNMNQMMKQVKKMQEQMLKAQEELGSKTIEGTSGGGVVSVQVNGHKKLLSIQIKPEAVDPDDVEMLQDLVITAVNDALTKAEELANNDMGKFTGGMKIPGLF
>NZ_CP009283.1|WP_039868996.1|127003_128779_+|DNA-polymerase-III-subunit-gamma/tau
MEHIALYRAWRPQSFQDMVGQQHIIQTLQNAIREQRVSHAYLFSGPRGTGKTSAAKVLAKAVNCERGPGPEPCNECPSCLRITAGNIMDVQEIDAASNRGVEEIRDLRDKVKYAPTEVRRKVYIIDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHKLPATIISRCQRFDFRRVSLEEQSGRLAEICLKEGITADTDALQYIARLSDGGMRDALSILDQISSFTDGQVTYQQVLGMTGGIPSEQFARLATAILEGDMGRLLELVEQLMQEGKSADKCLENLLYYFRDLLMIKMVPGADKLTDRVLNPAEFRDMAAGFTRGRLFQIIETLNRYLGEMKYATHPQTLFEVALMKLCTMQQEAEPAVASSAQAGSASATSAGGQPAAAGELDALKRQIAALEKKLEQAIQAGGISGAGRDQAAVQRQSPASSPAPRVSSGSKLPPQLDKFIASKDSADSNAIYKQWSTVLQAVKEERVTVHAWFVDGEPVSVMEDAVLVAFKNTIHRDTTEKPANRQVIEHVFAARLGKPYRLVTMMLRDWTEASQKSAAKPGTEELRLEHEHETAGEKSEPWIDEAIQLFGEDLVVIKE
>NZ_CP009283.1|WP_039868994.1|126279_126477_+|50S-ribosomal-protein-L31
MQEAIQPKYHITTVTCACGNTFEAGSVKQELRVEICSNCHPFFTGKQKFLDAGGRVDKFKKKYGI
>NZ_CP009283.1|WP_039868992.1|124889_126167_+|radical-SAM-protein
MYLVYADEQGNVYDHPELYGLARSGDMIVEMLEEELIPLPDGATLVGLPSTRAVGMNPETGEMLSLPEGSQAVGALLPQGFTRLCLPGYVKTDKSYKLPLFGYSAVVWKDGGFYVAADPTDDPEQWNPLNCDREEVEVGVGDLKAKYPENRLYDHLSNCALGYECLTSSNTFLGRWEGAVPVSYSCNAGCFGCISEQPDDSGFVSPQTRMNFRPTVNEISQVMLEHLKTPQSIISFGQGCEGEPSTQAKIIIEAMREVRAVTDMGYININTNAGLSDHIRGIVDAGLDLMRVSTISALDDHYNAYYKPRGYTLANVEKSLKYAASQGVYTSINYLIFPGVTDREEEIEAMVEFCRRTDLKLIQMRNLNIDPESYLGLIPPAQGEILGMKTMLDIFREELPEVVIGSYTHIPPAELARVKERRVRL
>NZ_CP009283.1|WP_039868990.1|123508_124864_+|transcription-termination-factor-Rho
MDLQISDLEEMKLTELYKLAKKYQIPYYGQLKKRELIFAILRAQAEQSGLMFMEGVLEILPEGYGFLRPINYLPSAEDIYISASQIRKFDLRSGDLVSGKCRTPKENERYFGLLQVNAVNGENPASAAERLHFPALTPLYPQDKLPLETSPTHLSTRIMDLLAPVGLGQRGLIVAPPKAGKTLLLKEIANSISTNNPEIELFVLLIDERPEEVTDMQRSVKGEVVASTFDELPENHIKVAELVLQRALRLVEHKKDVVILLDSITRLARAYNLVVPPSGRTLSGGIDPAAFHRPKRFFGSARNVEEGGSLTILATALIDTGSRMDDIIYEEFKGTGNMELHLDRKLAERRIFPAIDIRRSGTRREEVLLSKEELDTIWAIRKNMNESYDFVEGFLKKLRDSKTNAEFLASFDVSGKDSSSPSGTASSGGTSNSGASARRTSRPKTPSVPTT
>NZ_CP009283.1|WP_039868988.1|122122_123376_+|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MEKLMIGGGRPLKGVVTISGAKNSAIALIPAAILAESEVVLDNLPSLSDVAVYSEILEELGATVSWTGSQMRIDPSRIVSIPMPNGPVKKLRASYYMMGALLGRFKEATIGLPGGCNFEPRPIDQHIKGFEALGATVTNDHGSIHLYAKELRGAKIYLDVSSVGATINIMLAASRAKGSTIIENAAKEPEIIDVATLLNSMGAVIKGAGTETIRIEGVTEMHGCRHSIIPDRIQAGTYMIAAAATRGNVLIDNVIPKHLEALTAKLLEMGVGIEELDESIRVIGRSKYEHVDVKALIYPGFATDLQSPMTSMLTQAEGVSVLSDFVYSNRFKHVPELVRMGAKIRVEGRSAIIEGGRLNAAKVKAADLRAGAALVIAGLTVDDGITEVTGVEYIDRGYDNLVTNMRDLGAEIWREED
>NZ_CP009283.1|WP_039868986.1|121088_121943_+|class-II-fructose-1,6-bisphosphate-aldolase
MPLVSMTDMLNKALEGKYAVGQFNINNLEWTQAILGAAEEEKSPVILGVSEGAARHMGGFTTVVKMVEGLIHDMKITVPVAIHLDHGSSFDKCKDAIDAGFTSVMIDGSHHPIAENIEMTKKVVEYAHAKGVSVEAEVGTVGGQEDDVIGGIQYADLNECIALVKETGVDTLAPALGSVHGPYLGEPNLGFKEMEEIRDAVKLPLVLHGGTGIPLHDIQKSISLGTSKINVNTENQIAFAKVVREVLAAKPDAYDPRTFIAPGREAIKQTVIGKIREFGSSNKA
>NZ_CP009283.1|WP_039869005.1|137006_137963_+|NAD(P)/FAD-dependent-oxidoreductase
MRYDAIIVGGGFAGLQAAIQLGRYSVHRVLVIDAGAGRSTLCRGYHNILGWPDGVSGEELRAKGHQQAETAGVAFVTDRILTAQKKDGFFLLSGQQGQQYEATTLLLATGVMDRFPELPGIKETMGRTLYVCPDCDGYEIEKRQTVLLGSGDAGANMAFVLRERTGDLTYINHEREPVSPENMERIHDQGIRYIEKTAAKIDHENNGFIKKIVMENGEEIPAERGFIAFGRNAVHSELAAQLGVNLHKNRHVEANSRSLMTNVDNLWVAGDIAVHAEQATVAMGEGAIAGIWMNKVLKKLNPPVLPVSKHAVCSTKKH
>NZ_CP009283.1|WP_039869006.1|138074_139169_+|PucR-family-transcriptional-regulator
MDSEALRQRLEQLTGKRTGIKQLGRQHSASLFGVGAESQEQPITHEGHLWVPLYENEGRFTALWVEMEGLSPLELELVNYAARNYAVALKATGLKEEGEVEARQLSLWLNSQLEQEKNDAEIPDEMSLKGRLFGDMIPFLLVSENVHNPQMTYRSLMKLLRNYFENEILLIPLQEKEWLILARKELLTGGDDKEDEEESEDELLAQTSMGLHELIASEWVGVFHLAVAPAIIPVKGLTGSLALLRETIVLGRIFQVGDYIHLPWELHMERLVNSIPDGRRRQLLGQIGDYSSVLADKEMLLTLETFFEMDCNVSETAKKLYIHRNTLLYRLDKIKQETGADVRSFGDAAIVKLAMLLYKVTKRK
>NZ_CP009283.1|WP_039869007.1|139278_140400_+|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MAGVRLEHIFKKYPGSDKATVMDINLDIKDKEFLVLVGPSGCGKSTTLRMIAGLEEISEGKMYIGDRVVNDVAPKDRDIAMVFQSYALYPHMSVYQNMAFGLKLRKVKKEEIDKKVREAARILDIEHLLERKPKALSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRGQMRAEITKLVKRLETTCIYVTHDQTEAMTMGDRIVVMYDGIIQQAASPEELYNEPTNLFVAGFIGSPTMNFINGTLSDVNGAVRFRAENLDVEVPGGKATILRSKGYIGKEVILGLRPEDIHEEPVFLEASPNTIFSSLVDVTENLGHEMLLYLSGVGTGTVIARVDGRSTTREGSKPKLAIDMNKVHIFDKESELNVLLG
>NZ_CP009283.1|WP_039869010.1|140630_141569_+|HPr-kinase/phosphorylase
MAKKVKVSELVQHFQLEVVSGHEGLKRPITVDDLNRPGLEIAGYFEYYPEERVQLLGKTELAFFAMLPEEERIKRIRGICTDNTPCIVITRALDVPQELIDASNEKGLPVLRSSMATTIFSSRLTSFLEGRLAPTATIHGVLVDVNGVGMLITGSSGIGKSETALELVKRGHRLIADDAVEIRQTSDNQLHGTAPELIRHLLEIRGVGIINVMTLFGAGAIRNHKRITLVVRLEAWQQDKQYDRLGLDEETTRIIDTDVTLVTIPVRPGRNLAVIIEVAAMNYRLKQMGFNAALQFTNKLTATISEDMDDLD
>NZ_CP009283.1|WP_039869012.1|141583_142612_+|prolipoprotein-diacylglyceryl-transferase
MFFSLAINPIVFSIGSLPVHWYGLILGTGALVGLFLAIREGKRFNIPQEFFMDLLLLGVPSAIIGARIYFVAFMWDDYKDNLMDIFKIWNGGIAIYGALIGAIICGIIYFRYKGYPFWRIVDICAPSLLAGQMIGRWGNFVNQEAYGGPIEESFLRDKLHLPDFIVNQMYIGDAFHHPTFLYESLWSLLGIALLMVLRRQKFVKAGEIFLSYFIWYSIGRFFIEALRTDSLGFNGSSGVASLMDGLWSPMTWMGFEQGYFDPAYGNIRISQLLALLIIIAAIIIIVVRRVTGQANAYYSDPIVSTKAAAAGPVVPEAAVTPQKAPQDTQSEAEQAENQQRKE
>NZ_CP009283.1|WP_039878064.1|142621_143263_+|pyrophosphatase-PpaX
MIEYVLFDLDGTIVNTNELIINSFMHALKENNLPPLSREQIIPHMGTTLQQQISTFTGLVDTSALELSYRAYNNAHHDELIAAFPRVNETMEALLERGIKLGIVTTKIRPTTIRALEMFDLLKYMDTIVTVNDVEHAKPHPEPVLTALRNLNADPQRTLMVGDSAVDIQSAQAAGVRAAAVAWSLKGEETLRKYNPDYIIHDMEDILNIVEQG
>NZ_CP009283.1|WP_039869014.1|143270_143795_+|acyltransferase
MRKVTRYPVEGHNSLWYIYRTVSPWKGVRNFIFIQIARYCPILPVKNWIYRSILGMKVGKHTAFGLMAMVDVFFPEMITVGENSIIGYNTTILAHEYLIKEYRLGEVVIGENVLIGANTTILPGVTIGDGAVVAAGSVVHKDVAAGSFVGGNPLRELRPASSGPDPGTKLTDRL
>NZ_CP009283.1|WP_039869017.1|144112_145330_+|acyltransferase
MDAARQERLPQLDIYRALAITGVLHVHASSFAAGEQALNSPYYYWLNWINIFFKFGTPSFIFLSSFVLFYNYYGRPVTRSLIGHFYRRRLKYILLPYLLASIGYYTLTLYVNGVLMQQPAENLSSFLAALFSGSAYAHLYFVFISIQFYLLFPLILKLLQSSRLWVKWAFPLGLGLQWGFILWNKYQLHIVEKGSLAISYLAYYMLGAYIAVHFEEMKRWLMQPWGKLTSGHKRLTVLLFTSWLAAAFIHVQLWYEARHFGNWTDSLWYELLWNVHTLLSALVLLYVTFMLYRKAPRGLVAFLTRLGELSFAIYLIHPLLLAVYRRFRYSISPDSLLYVGFIYGGLMVALAGSWIMVQFAFRRFPQAWMAFGSVPRPLAPPVKVKPSVTAGNGQVQSEIKGKHGA
>NZ_CP009283.1|WP_039869019.1|145387_146539_+|acyltransferase
MGHKERIPQLDIFRAIAIFAVLAIHATSRTLSETLGTGMFHPFLFINKFSQFAVPSFVFLSGFVLFYNYIDRPLSGKTLGKFYSRRLIYIIVPYFVFSLLYFILKMTAGHTWNMPIDDMAAKLWKYLWTGTAYTHLYYIIIIIQFYVLFPLMLWCLQKARKLAAWAPVIGLALQWGFVLLNKYMVNNGYWQLSKGSLSITYFSYFLLGAAVAIYYGSLKKWLIPSREGWKSGRGGVWIALWLLWAAAGVIHVQLWFNNYTKKTVINSLWYEGFSNLHALLSCLVLLQLSFLLYGAGRSLLTRMLISVGACSFGIYLVHPAILFFYRKLPFHGGSLAYTAAIAGGFLAALLLSWLVVAVAFRYIKPAWVLFGSAPQKPKSKAAV
>NZ_CP009283.1|WP_039869021.1|146633_148184_-|gluconokinase
MNLNTSYMIGVDIGTTSTKAVLFRENGSIVTQASEGYPLHQPSPSVAEQDPDQILDAVLHTIAAVMQQSAIRPDELLFLSFSSAMHSVIAVDSAGAPLTACITWADNRSSTAAARLKNELNGHELYLRTGTPIHPMSPITKLMWLGEEQPELFRQASKFISVKEYVFVKLFGKYVVDHSIASCTGMFNLEKLDWDPEALRIAGITADRLSEPVPTTRVIQGLLPGFAEQLGLLDSTPFVIGASDGVLSNLGVGAIEPGVVAATIGTSGAIRTVVDRPLTDPKGRIFCYALTEKLWVIGGPVNNGGMLFRWVRDEFAASEVETAKRLGIDPYEVLTRIAEQVPPGSNGLLFHPYLTGERAPLWNPDARGSFFGLSMTHRKEHMIRSVLEGVIFNMYTVLLAMEERIDRPSRILATGGFARSSLWRQMMADIFDQEVIIPESIESSCLGAVVLGLYATGRAASLDIVFDMIGSTHRHVPVEAHAKVYKQLLPIFISVFRSLESQYEAIAGFQREQAGE

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Crispr_ID: NZ_CP009283_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009283_2

846360-846455

Orphan

Consensus_repeat	Method
GAAATCAATGGAGTGTATGCTAACAAAACTT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP009283_2

>merge|NZ_CP009283|2|846360-846455|CRISPRCasFinder
GAAATCAATGGAGTGTATGCTAACAAAACTTAAGCGTATGCTTCCGGAGTGAGTTTGTACGAGGTGAAATCAATGGAGTGTATGCTCACAAAACTT

>NZ_CP009283|2|2|846360-846455|CRISPRCasFinder
GAAATCAATGGAGTGTATGCTAACAAAACTT	AAGCGTATGCTTCCGGAGTGAGTTTGTACGAGGT
GAAATCAATGGAGTGTATGCTCACAAAACTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009283.1\|WP_039869907.1\|852141_852486_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039869887.1\|832746_833166_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039869900.1\|842888_843722_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP009283.1\|WP_039869910.1\|854717_855536_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NZ_CP009283.1\|WP_039869876.1\|829953_830550_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377032
NZ_CP009283.1\|WP_039869903.1\|843724_844618_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP009283.1\|WP_039869916.1\|860627_861122_+\|CYTH-domain-containing-protein	unknown	unknown	gnl\|CDD\|143626
NZ_CP009283.1\|WP_039869879.1\|830604_831369_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377906
NZ_CP009283.1\|WP_039869912.1\|855540_856329_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NZ_CP009283.1\|WP_039869890.1\|838427_838709_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039869909.1\|853753_854716_+\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|224868
NZ_CP009283.1\|WP_039869882.1\|831609_832362_-\|exonuclease-domain-containing-protein	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99836
NZ_CP009283.1\|WP_039869897.1\|841045_842863_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225519
NZ_CP009283.1\|WP_039878211.1\|833191_838189_+\|DUF4132-domain-containing-protein	unknown	unknown	gnl\|CDD\|379270
NZ_CP009283.1\|WP_039869908.1\|852665_853751_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270307
NZ_CP009283.1\|WP_039869905.1\|844742_846092_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270452
NZ_CP009283.1\|WP_081957186.1\|846467_849149_+\|glycoside-hydrolase-family-2-protein	unknown	unknown	gnl\|CDD\|225789
NZ_CP009283.1\|WP_039869906.1\|849559_851716_+\|alpha-galactosidase	unknown	unknown	gnl\|CDD\|225882
NZ_CP009283.1\|WP_039869915.1\|857446_859168_+\|adenine-deaminase	unknown	unknown	gnl\|CDD\|223933
NZ_CP009283.1\|WP_039869914.1\|856359_857424_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361

Protein	Function_ID	Function_description	E-value
NZ_CP009283.1\|WP_039869900.1\|842888_843722_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	2.02292e-55
NZ_CP009283.1\|WP_039869876.1\|829953_830550_+\|hypothetical-protein	gnl\|CDD\|377032	pfam03413, PepSY, Peptidase propeptide and YPEB domain. This region is likely to have an protease inhibitory function (personal obs:C Yeats). This model is likely to miss some members of this family as the separation from signal to noise is not clear. The name is derived from Peptidase & Bacillus subtilis YPEB.	8.73737e-10
NZ_CP009283.1\|WP_039869903.1\|843724_844618_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.78138e-76
NZ_CP009283.1\|WP_039869916.1\|860627_861122_+\|CYTH-domain-containing-protein	gnl\|CDD\|143626	cd07761, CYTH-like_CthTTM-like, Clostridium thermocellum (Cth)TTM and similar proteins, a subgroup of the CYTH-like superfamily. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. Members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily have a unique active site located within an eight-stranded beta barrel.	2.57109e-31
NZ_CP009283.1\|WP_039869879.1\|830604_831369_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|377906	pfam07739, TipAS, TipAS antibiotic-recognition domain. This domain is found at the C-terminus of some MerR family transcription factors. The domain has an alpha-helical globin-like fold. The family includes Mta a central regulator of multidrug resistance in Bacillus subtilis.	3.09899e-44
NZ_CP009283.1\|WP_039869912.1\|855540_856329_+\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	1.43131e-67
NZ_CP009283.1\|WP_039869910.1\|854717_855536_+\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	2.10124e-73
NZ_CP009283.1\|WP_039869909.1\|853753_854716_+\|nucleoside-hydrolase	gnl\|CDD\|224868	COG1957, URH1, Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism].	8.62532e-108
NZ_CP009283.1\|WP_039869882.1\|831609_832362_-\|exonuclease-domain-containing-protein	gnl\|CDD\|99836	cd06133, ERI-1_3'hExo_like, DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins. This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ERI-1 has been implicated in the degradation of small interfering RNAs (RNAi). 3'hExo participates in the degradation of histone mRNAs. Snp is a non-essential exonuclease that efficiently degrades structured RNA and DNA substrates as long as there is a minimum of 2 nucleotides in the 3' overhang to initiate degradation. Snp is not a functional homolog of either ERI-1 or 3'hExo.	1.61712e-49
NZ_CP009283.1\|WP_039869897.1\|841045_842863_-\|sensor-histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	5.76079e-62
NZ_CP009283.1\|WP_039878211.1\|833191_838189_+\|DUF4132-domain-containing-protein	gnl\|CDD\|379270	pfam13569, DUF4132, Domain of unknown function (DUF4132). This domain might be involved in the biosynthesis of the molybdopterin cofactor in E.coli.	3.78283e-47
NZ_CP009283.1\|WP_039869908.1\|852665_853751_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270307	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic binding domain that serves as the primary high-affinity receptor of an uncharacterized ABC-type polyamine transporter from Rhodopseudomonas palustris Cga009 and related proteins from other bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.81554e-79
NZ_CP009283.1\|WP_039869905.1\|844742_846092_-\|extracellular-solute-binding-protein	gnl\|CDD\|270452	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold. This group represents the periplasmic component of an ABC transport system XBP1 that shows preference for xylo-oligosaccharides in the order of xylotriose > xylobiose > xylotetraose. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.2379e-40
NZ_CP009283.1\|WP_081957186.1\|846467_849149_+\|glycoside-hydrolase-family-2-protein	gnl\|CDD\|225789	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].	6.41885e-115
NZ_CP009283.1\|WP_039869906.1\|849559_851716_+\|alpha-galactosidase	gnl\|CDD\|225882	COG3345, GalA, Alpha-galactosidase [Carbohydrate transport and metabolism].	0
NZ_CP009283.1\|WP_039869915.1\|857446_859168_+\|adenine-deaminase	gnl\|CDD\|223933	COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism].	1.16021e-162
NZ_CP009283.1\|WP_039869914.1\|856359_857424_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	5.18617e-143

>NZ_CP009283.1|WP_039869905.1|844742_846092_-|extracellular-solute-binding-protein
MRNKLFSLSFVIIMTLSLSLTGCGSNNNNNNTATATDEPAATAAPANTGGEAAATTEPAAPSGADISGKITFLTNRTDMIGKEYDEYVKRFNEKYPNIKVEFEASQTDYNQQAKVRMASGELPDVMFVPTIPNSDLPKYFASLDDLGLTDQITFKDFKSYEGQLYGITTGNSTTGVVYNKKAFADAGITEIPKTWDEFLAACEKLKAAGVVPLASNFKDKWPLNDWVYSVPRIIDGDPNFPNEKLTSDTPFTMDNGYGKSLSLLRELNEKGYLEKDINSTNWEQSKKDIASGKFAMYYLGNWVINQVIGAGTTSDNVGFFPLPYDNSGTITAPLSPDFFYAVAKNSKNVDAAKAFVKWMIEESGYEDFAGFISPLKGRESKLTQLKEFQATGVVLQEGTVDDAQVTEITNKAQLDLPAMAQEFVLAKDPQTVFDKWNKAWAKAKKDLGY
>NZ_CP009283.1|WP_039869903.1|843724_844618_-|sugar-ABC-transporter-permease
MFGTLSYNKQKLIIIISFLTIPLLLLATFTYYPALKLIYYSFTNWDGYSPEKPWVGLDNYREVFGNPDIFKVFTHNFAYFVMGIVQNIVAIYFAVVLSSKLRGKNAFRILLFLPYIMNGVAVAFMFGYVFDTTNGSLNLFLNSIGLTGLGQTSWLGTEGLVNYSLASTGFWRFMGYNMVIYIASLQAIPKDIYEAAKIDGAGSFQTLWRITLPNMKPVIQLNLFLTVTGALEVFDLPFVLTKGGPAGASETYVQKVVDTAFAFNNYGLASAMSIILLFFVVIVLLVQQLVLSRGGDK
>NZ_CP009283.1|WP_039869900.1|842888_843722_-|carbohydrate-ABC-transporter-permease
MTHSKFRSVDVFKYVTLLIGVFVVLFPPYVVIVNAFKSTEEFNSSSSMALPQSFLNFDNFIAVFQRGGLLSGFGNVLVIIIITLTLNILFGTMVAYVLGRFNFKLKPLVFGAYLVATIIPSITTQVATFGIIKSLGLYNTLGAPIVLYIGADVIQIILYLQFIRNIPFDLDESAMVEGASLFKIYRSIIFPLLTPATATLVILKTISIYNDMYIPYLYMPKQSLGVVTTILMRFQGVNSGEWNLICAAILLILLPTVILYFFLQRFIFEGVTSGAVK
>NZ_CP009283.1|WP_039869897.1|841045_842863_-|sensor-histidine-kinase
MVSYILRIPRRLWLFLANLPMERKLIVVFIFVLSLPITYVSYLSSRSTFHSVLQSSTKSAGQMAGSASDTIDRYIADLKRYTALPLYNTDVQFYLEQQNADWEKNTSMSMFLSYLIHTKEEMTAVYLVDKYGYVFYDRAPGINELFPAERMAQWRSLTEEAGVAPVVQGRHTIRVNPGEQREVFSVMRTVSSVSMLKPIGMIIFDIDIKLFKGIADPVNAVTQGNTIIVDESGGLVYGSEAEDSPLIDKDTQNVSLLLQKTAGPEGNFQIRLGAQDYLAVYTVSQQTGWTTLVTIPLERILTPVQKTRNTLILTTLAIVAFALVVATFISHALTKPLKSLVRLMKQVQHGNLDVWLSPKYNDEIGMIGSHFNRMIIRVKDLLQEVSLTEKRKQKADMRALQNQINPHFIYNTLESIRMLAEGSDEPRVAELTYLLGLQMRYGIVRSEEMVTIRHELDHVRNYLNLLQIRFPDKFRLDINVPEELLPLPVLKLVFQPVVENAVFHGLEAKDGPGTLSITAWSEDGKTVFCVEDDGIGMDAETLRLLNSNLLNSSDSEKFGIGLRNVNERLRLHYGSSSGLQVHSEPERGTRVILRIEDLPDERGGE
>NZ_CP009283.1|WP_039869890.1|838427_838709_-|hypothetical-protein
MPIPPAIGGIRGLFALGLTIPPTIGGIRGTFAFDLPIPPAIGGIRGTFALGLTIPPTTSGIRGTFALYFAHSARRLLPYHTPIPTITYAETKK
>NZ_CP009283.1|WP_039878211.1|833191_838189_+|DUF4132-domain-containing-protein
MNAEEREKQWYADKQAEAQKLDAEVSGLASLILSISRIQYIGGEEEECRECINVLKKLAGNAQQSLFDPLVATVRQLFSPYTADVMQYITEHCTEYPYSRGYARRPFRSANPELHLFTVLSKMGSLILMDREGLLLSAYMQSAENPESGSDYSRKHRINLVLSDVIAYELDRKDGDMLEQIRTIVYGDNQGALLSHEIIKGVFMSHRQEAVAMMGELLIAARLQEGLRQSLVERMDEGTLANNLYMLQIIIENDFIRYSSVVRALGVWTGMGLEAQNQRVAKALIEDAYQALQDAGLREQWLSDVNANRVYISLWATAAHEEANLYDKIKTLMATGQVYQKIIALYLLANSQETELRLRLARENLHEQDNELQYWVLLNYCYGYNRLWRPEKDEPKISLIRSPQLEDKEERRKDFELLKAMVLNPSRRELTGPSKVLDFIQVNYTSAFPVYKMLYLIAYDMDNDWIDGLIELKDQLSSDLRGELLSCFMDHPLSEVQREFLFASLSDKSMKNRELALNEASGLTLTPQELLQAEGLLKLKTGSLRQSVTLLLLSQPDSSLQESVSRLLQEKNSLQRLAGLEIATVLFEDEQRSALAQQVKPLVEAMDRPSAKERELLAKLERRNEYTAANGFGLFNPAETEEWLTQGPQPGDFKWDEVFGSSLEDIERFLQGLDQLIHEHRDTEYEHEDYSDRKETLLLGTMLKPLKWNSLWDQEDKENTSQLEQYPLHEVWSAYLKERGWDAAGLLELHFYLQLEDLNKTLNDYHGFYSSEMDYNELRKHKLLEGWRGEFAASVYPLQRISEVDRLLGKLKYGQHVDTLIRAFYADSAKKEGFRLVNRALNALLAAMPEEKMATEAPLLNVLAEPWLMMIRGRVADQEDFKTMFRTLYTFDKMTPPAQNWWNVKLSLDDYLRAFEAEWIGENELYKELLASEGSKQHMQNLTSSHRNLAWIEDSLSITSLRSRLIDRLMEIELARGDLPTEVTPLVMGLQRISGMEYFIRILTGLDKETFVRGYIYGYGRSITKKETFSHLLKNCHPREGEDAAMLGKMVKESGISEKRLLEAAMYAPQWLELVAEHLGWEGLRSAAWYFHAHINESFSAEKETVVAHYSPITAQDFNDGAFDGNWFLSAYNTLGEKRFALLYDCAKYISAGSNHRRSQLFADAALGKLNLADMKASVTGKRNKDHLLSYSLIPLGKDREQDVRERYELIQRFLAESKTFGAQRRASEGLAARIALGNLARTAGYADVTRLMWDIEARKLDELGSYFEAHMLDEDTSVRLAIDDQGQSELEVISKGKQLKSVPTRFKKHEYIEALKETRSELTGQYRRARVELERSMEAGSSFTLQEISSLSRNPVLAPLLRTLVLRSGTALGYFKPEAGTLAAPSGEEAVIAPDAELYIAHPLDLYTSGQWSEYQRDLFDRQLRQPFKQVFRELYLPNADELASATVSQRYAGHQVQPRKTVALLRERQWTVSYEEGLQKVYYGANLIVRLYAMADWFSPADTEAPALESVEFIDRKTYKNVPLAQVPPLIFSEVMRDVDLVVSVAHVGGVDPEASLTTVEMRRVIVNESLRLLKIENVRLEGNYARIDGKLGEYAVHLGSGQVYKQASGALHIIPVHSQHRGRLFLPFLDEDPRTAEILSKVVLLAEDTKIKDPSILSQLRG
>NZ_CP009283.1|WP_039869887.1|832746_833166_+|hypothetical-protein
MLLYVTVKSVGKRKPVLGRRELILEQTPGNLKELITAVVALQVKELTDKQGRGELIPFLTGDAINDQRDSGKIGFGTVYNDNLPELSQAVEAALLAFEDGLYKVFLREEACDQLQEPLVLNEGDELVFIRFTMLAGRLW
>NZ_CP009283.1|WP_039869882.1|831609_832362_-|exonuclease-domain-containing-protein
MDYIILDIEFNGRKFASEHPMEVIEIGAVRLDASLQFKDEFSALIKPIYFSTLNSFIKKKTGIPQEDIDVAARFPKVITAFRSWLDQSPDGVLLLTWGGEDMKRIIQDVRMHKMDEAYWMEATYFDLLKGLLRARGLTNDISVEGAMALLGLEPSGSAHRALDDARMTAEIFRAVFEELDFSRSQHFVDTFSNARERKTVKIAIKAMTSQKIVPTWELVAEHYFKGEGALADPRKAAELQAYFTAQLGKK
>NZ_CP009283.1|WP_039869879.1|830604_831369_-|MerR-family-transcriptional-regulator
MEYTVQKLGALAGISPRTLRYYDEFGLLRPARINSSGYRIYGQAEVNLLQQILFYRELGLTLEAIRDIVTSPSFDGARALREHHEQLLQRRKQLDELIANVEQTLAQSEGRITMSNEEKFAGFKQKLIEDNEQKYGQEIREKYGEEAVEKSNRKLRNMTEEQYAACQQLEEDLFAALEQAMEEGDSASELAQKAAGLHRQWLGFSWDTYTKEAHAGLAQMYVEDERFTAYYDKRRPGMAAFLRDAVHIYTGAKQ
>NZ_CP009283.1|WP_039869876.1|829953_830550_+|hypothetical-protein
MKKQLLSSVAAAAIILGGAYGINEVRSGTAAAAPAVQQSQSKTLIGIAKAEEIALKAAPGQVESIDLEKKLSGTYYDIDIQQKNQEVDVRVDAYTGKVVSVRKEADNDDDDYNYTSAGAASEAKLITAAKAAAAANAAVKGKVTDVDLDRDDGTAVYEVEIRNGRTSTEVGVDAYTGKVLYTDVDSDDDDDDNDGYDD
>NZ_CP009283.1|WP_081957186.1|846467_849149_+|glycoside-hydrolase-family-2-protein
MTHKQLALTDWEFRACGEDKWFPAIVPGTVHTDLLRNGLIPQPFYGKNEHELQWIDKKDWEYRAVLQLDEDWQSLTVTELNFAGLDTYADVYVNNVHALSADNMFLAWTVDVKGLLRTGENEILVKFRSVVKEDLPKLERLGYDLPAPNDQSELGGLQEQRISVFARKAPYHYGWDWGPRFLTSGIWREAVLTGRGAAAIADLYIRQDVIKQEEARLTAIVEVDAPEAWEGTLRLTAEGQEWTRAVSLVAGTQTAELELVINQPRLWWCNGLGAPELTSFRAELLENGAAVSGAEVKTGLREIKLIRKPDAKGASFRFELNGVPVFAKGANHIPNDSFITEVTEERYRHEIASAVESNMNMLRVWGGGFYEEEAFYRLCDEYGLLVWQDFMFACSMYPGDEAFLENVRKEAAYNVRRLRNHPCIALWCGNNEIDSAWAQFEENKGWGWKEKLSAEIRETLWTAYEDIFHRILPEAVAAHHPGIVYWPSSPLRELTNDIDQHSVRIAGDGDIHYWGVWHGIEPFENYNVKVGRFMSEYGFQSFPELKSVLTYAVEADMELESEVMLAHQKNGRGNQIIKEYMDIYLPEPKDFRSFLYMSQILQAEAMRMAIESHRRNKPYCMGTLYWQMNDCWPVASWAGMDYYGRWKALQYTARRSFKDVLLSVEAMDGEKLQVHAVSDLREVLAGELVVRLHNFSGAVLKEWKQPVQLAADSSAVVFAVPVAELLAGCAAEQVVLVAALEAADGSLLERKEHYFAAAKELKLEQPALTVAEVPGSGGVSFTVSSDVLARGVYLTAEQEGIFSDNFFDLLPGEAKTVQFLQHGGAAAGGAAGAGVTATGAGVSAGAGAVAGVGARTVAGAGTSAGTSAGVSTADFTPAVPQGLEVCSMADYLK
>NZ_CP009283.1|WP_039869906.1|849559_851716_+|alpha-galactosidase
MAIWVQEDKGIFHLQSKGMSYIIGLYNNYPMHVYWGKKLRHDGNLEGLPHLGVGTALDRLPQEYPQYGTGDYRVPAYQVKLEDGTRITELQYTGYRVLAGKPQLAGLPSVYVELPEEADTLEITLRDDYASLNVILRYTVYRDTDVIARSVELVNDGQAPLDLLRALSASVDFPEDGQFDLIYLSGGWSREGNLTRRRLEQGTTALQSRRGMSSHQHNPFAALAKPGTDEHQGEVYGFSLVYSGGFAIEAEVDAFSHTRLGIGLNPFDFSWRLAPGESFQTPEAVMVYSAEGLGGMSRTYHRLYRTRLVRGTFRDKERPILVNNWEATYFNFNADKLVDIAAEGSKLGIELFVLDDGWFGKRDADNSSLGDWTEDLRKLPGGLADVAKRVNDLGMQFGLWVEPEMISPDSDLYRAHPDWCLHVPGRRRTEARWQLVLDLTRAEVRDYVYNALSKIFSSVPIAYVKWDMNRNLTEIGSAELPAERQAETAHRYVLGLYELIDRLTGDFPHILFESCSSGGGRFDPGMLYYMPQTWTSDDTDAAERLKIQYGTSLVYPISAMGAHVSAVPNHQVGRVTPLSFRGDVAMSGNFGYELDLTKFTDEEKELVKQQVANYKEIRSLVQQGNLYRLQSPFEGNETAWMFVSDDQREALVYYFRVMAVPYPARRTLKVRGLNPDLDYTVLDSGEVFGGDRLMQAGLALPDIQRDYVSGCFHLKAQD
>NZ_CP009283.1|WP_039869907.1|852141_852486_+|hypothetical-protein
MAELENSEQKKKMCQIYNEISKELFGFGTTLLRVTVDQRVITFHAKHRRSPRSTALEGEAPELKQEVDFRMSLLFKKRFKERLEEEMGLTIEVLLRDYDAPTQWAFTNMILAGE
>NZ_CP009283.1|WP_039869908.1|852665_853751_+|ABC-transporter-substrate-binding-protein
MKKIMTTGLALALTSMLAACGSNNAATNNTGTDNAATGNTASGEPAELVISTWGFSEDFFKEAVYAPFEKEHNVKIVVEIGNNAERLNKIRQGSSNVDVVYLSDYYAQQAINEGLFETIDSSKIPNLQNIYDIAKAPLGADYGPAYTIGRLGIAYNPALTSGEVTAWSDLWTKFDKNLAMPAITATAGPMIVDAASLAAGNADFNEDTAFTKLKELDSNVVKYYGQTSEYVNMFGQEEIAGGPIMEMYFKDLQAAVPDAKFVAPSEGAYAVMNTVNVVKGTDNKELAEEFINWQLSEEVQDASAKAKVDSPVNMNVMLTPEEAVGVTYGADVIGQLRKLDMSFVNQHITEWTDRFNREIGG
>NZ_CP009283.1|WP_039869909.1|853753_854716_+|nucleoside-hydrolase
MTARKKVILDVDTGVDDALAIMLAVTSGQLDILGITTVSGNVSLNQATLNTCKILELLGVSGQIPVFRGADQPLVRDSVFEHRVHGSDGIGGALTAMTVTKQSEAERAEDFIIRQVLEQPGEVTLIMTAPLTNLARALHKCPELTQHAAEVIVMGGVVQGFGNITPTAEYNMYVDPEAAKLVLAAGFPRLTLVGLDVTRKALLSADDITRLQNPVIRDYVEKSTADYRTRYWERNGVQACALHDPLAVGVALNRSFVTVRDYYVDVETRSDLCDGQTVCDFQNRLGRPANAGVCLEVDAPAFLECFINSLNQEPKKDGSH
>NZ_CP009283.1|WP_039869910.1|854717_855536_+|ABC-transporter-permease
MNKKALYLLLPGLLFLAAFMLVPITLTVASTFVQDGKLTLEGYLHFFRDGYFNRILLTTLRVSVVTTLVCMLLGYPAAYYISRASARKKSILLALSIFPLLTSPVVRSFSWMIILGKKGLINSFLVNIGLIDKPLDILYTPTAMMIGLVHLFLPLIIITLLGVMENLDHELVRAARSLGASPFAAFRKITFPLTVPGLIIGGILVFVGSLTAYTTPALLGGKERVVSTFLYQNAMTLNDWQAASVIAVIMIVITFVVVGLMNAWANRLNPKG
>NZ_CP009283.1|WP_039869912.1|855540_856329_+|ABC-transporter-permease
MKEGNRVLSLYTLLVFIFLLGPLVIISITSFEPGTVLKFPPEGFSLKWYRNIFEVSAFMDTFKTSIIISLLGNLLALLLGVPAAYALSRYRFRGRDTLNAIFLSPVLIPGIVLGFTLLRYLIVVYGLPIYAGLLIGHTVIMLPFIIRVIASSLENFDFAVEEAAQSLGASRLYTFFKIVLPNIRSGILAAILIAFLESFNNVDISVFMTGPGISTLPIQMLTYVQNYFDPTIAAISVILMVLTAALMFVIERLMGFAYFTKR
>NZ_CP009283.1|WP_039869914.1|856359_857424_+|ABC-transporter-ATP-binding-protein
MSLLSLEQVSVAYDNRLILEDFNLSLAKGQLLSLLGPSGCGKTTTLRLIAGFLNAEAGAFMFGGKDYTKVPVEKRNFGFVFQSYALFPHLSVFDNVAFGLRLRKLKEAEVKKRVTRMLEIVSLGGFEKRLPAALSGGQRQRVAIARALVIEPDLLLFDEPLSNLDANLRVNMRVEIRRIQQELGITTVYVSHDQEECFSISDQVAVMNNGKIEQLDKPSAIFKYPASEFVARFIGFGNFIAFDGRNDEGSDIELSRGALKFQAAKRPEGLGNTGLLGAIRPDDLQLFAASPEPGTASNILPGTVQISTYLGRSYQYQVETELGVFTVNQEMEQPFVQGQRVTVYFPKEKLVLVQ
>NZ_CP009283.1|WP_039869915.1|857446_859168_+|adenine-deaminase
MITDQLILNAKVYNSYYKRFETANVAVKDGRFLYVGQLGAETFAARETIDAKGQYLVPGLIDIHLHIESTMITPETFSYGILQHGVTTIVPEPHEMANVFGVEGVHEMIRASKDCLVDMFYAIPSSVPATPLETTGGSIEIADIDELMETEQMICLGEVMNFVDVIRDPDCKSNQILQHVRSKYPGLVIEGHTPKLLDLELHQLIFAGIDSDHTHQSIEGLTARIAAGMFIEIQEKSMTPEVVDYLIQHPVSEHFCFVTDDVMTDSLAATGHLDHLVRKAIAMGMAPEAAVYAATYTPARRMKLDDRGVIAPNKTADYLLLSDLSSFTIEAVYKRGAQVWDRSRPQVQATPEPRFPAHFYRSVQLAPLSAGDFAVRSELPDGRYGARVMTVNNVSTFTEEKHVEAEVKDGLLQWQDTGCGLIATFERYGKTGGRAYGLIVGDTIKRGAIATTYSHDNHNLLVVGHNAGDMALAANTVIAEQGGFCVVCDGVVLALLALPVGGILTEAPLAETAERVLGLRTAMESLGYNHYNPIMSISTHSLPVSPALKITDFGLIDVVAGKVVPLLFPLGEA
>NZ_CP009283.1|WP_039869916.1|860627_861122_+|CYTH-domain-containing-protein
MSMEIERKFLLPEYPEQLIEGGELKVITRHSIDQTYLAIEDGQELRVRKITDLDSGEVTFTHTFKDGKGISRKEIEYDISEGLYNQMIEAVKAVPLVKTRTTAVWNGITVEIDVYTQLQLTVIEVEFDSLEEAESFTAPEWFGEDVSTEKKYSNKTVWKELQKK

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Crispr_ID: NZ_CP009283_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009283_3

915650-915726

Orphan

Consensus_repeat	Method
TAACGGTAAAAGTACCGTTGATTATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009283_3

>merge|NZ_CP009283|3|915650-915726|CRISPRCasFinder
TAACGGTAAAAGTACCGTTGATTATGTGGAACTGGGCCGGGCGGCTGGAATTAACGGTAAAAGTACCGTTGATTATG

>NZ_CP009283|3|3|915650-915726|CRISPRCasFinder
TAACGGTAAAAGTACCGTTGATTATG	TGGAACTGGGCCGGGCGGCTGGAAT
TAACGGTAAAAGTACCGTTGATTATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009283.1\|WP_039869973.1\|904989_905826_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378964
NZ_CP009283.1\|WP_039869986.1\|914809_915622_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039869990.1\|916487_917897_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP009283.1\|WP_039870000.1\|922301_922625_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|212139
NZ_CP009283.1\|WP_039869979.1\|910394_912059_-\|spore-germination-protein	unknown	unknown	gnl\|CDD\|377020
NZ_CP009283.1\|WP_039869988.1\|915822_916323_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039870005.1\|924161_925097_+\|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl\|CDD\|377122
NZ_CP009283.1\|WP_039869982.1\|912241_912799_+\|DUF1273-domain-containing-protein	unknown	unknown	gnl\|CDD\|237461
NZ_CP009283.1\|WP_039869998.1\|921897_922281_+\|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|239517
NZ_CP009283.1\|WP_039869993.1\|917884_918565_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP009283.1\|WP_052421174.1\|902522_903476_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176133
NZ_CP009283.1\|WP_039869976.1\|908082_909270_-\|Ger(x)C-family-spore-germination-protein	unknown	unknown	gnl\|CDD\|274338
NZ_CP009283.1\|WP_039870003.1\|922629_922980_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039870004.1\|923063_924065_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP009283.1\|WP_039869996.1\|918735_919452_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NZ_CP009283.1\|WP_052421175.1\|912835_913156_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367663
NZ_CP009283.1\|WP_039869977.1\|909262_910366_-\|GerAB/ArcD/ProY-family-transporter	unknown	unknown	gnl\|CDD\|281794
NZ_CP009283.1\|WP_039878221.1\|919601_921731_-\|cell-division-protein-FtsI	unknown	unknown	gnl\|CDD\|274573
NZ_CP009283.1\|WP_039869985.1\|913173_914631_-\|amidase	unknown	unknown	gnl\|CDD\|180715
NZ_CP009283.1\|WP_039869975.1\|905946_907977_+\|beta-galactosidase	unknown	unknown	gnl\|CDD\|224786

Protein	Function_ID	Function_description	E-value
NZ_CP009283.1\|WP_039869973.1\|904989_905826_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	9.5693e-21
NZ_CP009283.1\|WP_039869990.1\|916487_917897_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.87542e-45
NZ_CP009283.1\|WP_039870000.1\|922301_922625_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|212139	cd11532, NTP-PPase_COG4997, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in a group of uncharacterized proteins from archaea and bacteria. The family includes some uncharacterized hypothetical proteins from archaea and bacteria. Although their biological roles remain unclear, the family members show significant sequence similarity to the dimeric 2-deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTP pyrophosphatase or dUTPase) and NTP-PPase MazG proteins. However, unlike typical tandem-domain MazG proteins, the family contains a single MazG-like domain.	4.46996e-34
NZ_CP009283.1\|WP_039869979.1\|910394_912059_-\|spore-germination-protein	gnl\|CDD\|377020	pfam03323, GerA, Bacillus/Clostridium GerA spore germination protein.	0
NZ_CP009283.1\|WP_039870005.1\|924161_925097_+\|ADP-ribosylglycohydrolase-family-protein	gnl\|CDD\|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	1.04115e-76
NZ_CP009283.1\|WP_039869982.1\|912241_912799_+\|DUF1273-domain-containing-protein	gnl\|CDD\|237461	PRK13660, PRK13660, hypothetical protein; Provisional.	6.8131e-81
NZ_CP009283.1\|WP_039869998.1\|921897_922281_+\|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	1.4038e-55
NZ_CP009283.1\|WP_039869993.1\|917884_918565_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	9.52523e-80
NZ_CP009283.1\|WP_052421174.1\|902522_903476_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176133	cd08442, PBP2_YofA_SoxR_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold. YofA is a LysR-like transcriptional regulator of cell growth in Bacillus subtillis. YofA controls cell viability and the formation of constrictions during cell division. YofaA positively regulates expression of the cell division gene ftsW, and thus is essential for cell viability during stationary-phase growth of Bacillus substilis. YofA shows significant homology to SoxR from Arthrobacter sp. TE1826. SoxR is a negative regulator for the sarcosine oxidase gene soxA. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine, which is involved in the metabolism of creatine and choline. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.39859e-57
NZ_CP009283.1\|WP_039869976.1\|908082_909270_-\|Ger(x)C-family-spore-germination-protein	gnl\|CDD\|274338	TIGR02887, Spore_germination_protein_B3, germination protein, Ger(x)C family. Members of this protein family are restricted to endospore-forming members of the Firmicutes lineage of bacteria, including the genera Bacillus, Clostridium, Thermoanaerobacter, Carboxydothermus, etc. Members are nearly all predicted lipoproteins and belong to probable transport operons, some of which have been characterized as crucial to germination in response to alanine. Members typically have been gene symbols gerKC, gerAC, gerYC, etc. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Sporulation and germination].	7.04014e-84
NZ_CP009283.1\|WP_039870004.1\|923063_924065_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	3.68274e-61
NZ_CP009283.1\|WP_039869996.1\|918735_919452_+\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	5.87905e-25
NZ_CP009283.1\|WP_052421175.1\|912835_913156_+\|hypothetical-protein	gnl\|CDD\|367663	pfam03795, YCII, YCII-related domain. The majority of proteins in this family consist of a single copy of this domain, though it is also found as a repeat. A strongly conserved histidine and a aspartate suggest that the domain has an enzymatic function. This family also now includes the family formerly known as the DGPF domain (COG3795). Although its function is unknown it is found fused to a sigma-70 factor family domain in CC_1329. Suggesting that this domain plays a role in transcription initiation (Bateman A per. obs.). This domain is named after the most conserved motif in the alignment.	1.34544e-11
NZ_CP009283.1\|WP_039869977.1\|909262_910366_-\|GerAB/ArcD/ProY-family-transporter	gnl\|CDD\|281794	pfam03845, Spore_permease, Spore germination protein.	5.33335e-76
NZ_CP009283.1\|WP_039878221.1\|919601_921731_-\|cell-division-protein-FtsI	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	8.53052e-106
NZ_CP009283.1\|WP_039869985.1\|913173_914631_-\|amidase	gnl\|CDD\|180715	PRK06828, PRK06828, amidase; Provisional.	0
NZ_CP009283.1\|WP_039869975.1\|905946_907977_+\|beta-galactosidase	gnl\|CDD\|224786	COG1874, LacA, Beta-galactosidase [Carbohydrate transport and metabolism].	0

>NZ_CP009283.1|WP_039869986.1|914809_915622_+|hypothetical-protein
MTRWGKGVLALLVALSVAGCTNDGATKGQTAAKADLPGAEELIDRIAEAGRGLNSYVQESQAWIATGIPADGGEASFTSDTTMTTEYILDPLQMHQTGSMIIGDKEPAETEAYFKEDSYYMLLEGLWRKMPDSFLEDLRLTVQVQSSPVRRMEMLKTILPYVNVSEAGEEYVLNVALSGEETKDLESFYELQYSSREVAAEMLQLLKSMSLEYRVSKETYWPTGTSEELVTEEMLDGDGAYREVKQKATMSQYNSVKEIAVPVEALQAAE
>NZ_CP009283.1|WP_039869985.1|913173_914631_-|amidase
MSFEIVEATIPEIGAAIAAGDITSRQLVLLYYERIAEHDKNGLTINSVLEINPDALFIAEALDRERELLGPRGPMHGIPVLLKDNINTGDKMHTSAGSLALADSFAGEDAFIVKRLRKAGAIIMGKANMTEFANFMTNGMPSGYSSRGGQVLNPYNISTPTGGSSAGSAVAVACNFCTVSVGTETSGSILNPGNLGSIVGIKPTVGLLSRSGILPLSNTQDTAGPMGRTVRDAVLLLNAMLGQDDNDAAMGTGTGRVHEDYTVFLDPDGLKGARIGIPRDYYFEELTEEQLALFNASVEKMRELGAVIIDPAEIRTAREIKYSSVVLNEFKTSLNAYLAGLGPGAKMRTLKDIIDFNHAHPQETLRYGQSTLIDAEYTSSGTMTEPNYLRDRITDLRLCKELGIDATMKEYELDALLFPADFGARITSRSGYPSIVVPSGYTPAGAPFGVTFSAQAYQEPLLIKLAYAYEQHYKVRKPPSLRSFV
>NZ_CP009283.1|WP_052421175.1|912835_913156_+|hypothetical-protein
MEAKETQEDICYVILLSPTEHDRRDMEIIRAHVRHLQELEHSGQLVLCGPFSDYPGGMVIIRAASREEAVRIAERDPYVTTGIRSYELRTWGLSHAGNRHMGIAAE
>NZ_CP009283.1|WP_039869982.1|912241_912799_+|DUF1273-domain-containing-protein
MTTLLVTGYRAHELGIFDNKHQGIPYIRKALENRLIPLIEDGVDWVITPGQYGVDLWACEVVLELKRQYPQLKLGIITAHANPEEKWKEDKQNEYRRIVAGADYYGAVSNAPYDGSWQFRARDDLLFRKSDAILLFYDEEAAEGSSKFVKERALKLHAESDFGFHLMLAEEIQNIADEESRSDYE
>NZ_CP009283.1|WP_039869979.1|910394_912059_-|spore-germination-protein
MLATIISYIPGWAIFGQAGIALLFPLAGHGLYKALYSLVGSGRAVESPGTKNSDPNKGLQAAADTGAAPSPRCFSGDYASDLKFIKDSIGSNSDLHFKEFTISGLQKQAVLIFVDGMQNDRQLNLEIMQYLMSETATDSLSDPEKALSELPFIHLTEASDLTMFNQSVLFGHAGLLVEGMPRVLLIEPPDSIDRTLGEPVSEALLRGPRLGFSEVLSENTSILRRQGLCDQLEMRSYQAGSRIRRDIVLAYMKDIVNPEVLKEVETRISKLDIDFLAESGYIEQLIEDNYLSPFQQVQNTERPDRVISALLEGRIAILLDGTPFALIVPVTFSMLLQSPEDYYERWLPGSMIRLLRFAASFMALMAPALYISFISFHPGLIPTELALSIIETRQGVPFPSIIEVLILEISIEILREAGIRLPKPVGPAMGIVGGLIIGDAAVNAGIVSPFLVIVVAVTAISSFSIPMYSAGLTLRMLRFVGMGFAALLGMFGTILFFLLLCSHLTKLKSFGVPYLTPVTPYRLADWKDLFLRAPLSLMKRRPIMMKTQNNRRKS
>NZ_CP009283.1|WP_039869977.1|909262_910366_-|GerAB/ArcD/ProY-family-transporter
MFSRTDDKITATQAAVFLNNTVLGAGILTLPRGVSEAVKTPDSWLSVLLGGVIVMAVVTLMVKISQQFPGKTIFQYAGKIVGRVPGALLCLLLVLYFLVLAGFEIRSLAEVTLFFLLEGTPIWAIILPFIWAGTYLVYGGINAIARVYQIAFPISIMILIICYTLSLRLFDIDNLRPVLGEGILPVIRGLKSTVLVYSGCEVVMTLVAFMQRPEKAVKAMLIGIGIPVGLYFVTVVMVIGGLSIDSVVTSTWPTIDLIRSFEITGFLFERMEFPLMVIWLMQMFCNFCSFFFQASLGISQIFRLKVHPVIYMLVPVIFISAMIPKSVSEVFSLGDFIGKSGLVLFLLLPVLLSIIWLIRTKGLKQHV
>NZ_CP009283.1|WP_039869976.1|908082_909270_-|Ger(x)C-family-spore-germination-protein
MYKRLLPLILCLSLLTTAITGCWSSKEIEDLALYTGLALDLGELTKAEQELEEKGVHYSKENKITATVQIVPVKTIGIKDKQGTQQAAPYHNVSGTGDSVLEIFRQFSIRNDRPIVGHHLKVIVVSAELLKRQSIDQLMDFVLRDNDIRPSTLVFISQGRAKDTMISNNDEVPSFHIRQMIRNQIRTSKVMSPVILSHMDALMHAKRSFALQNLVTADGETEFAGAAVIKGSTGHWVGNLNQEDTECLSWLTKKSSSGVIKAYDWDNEPMTYEMKAMNSKIKARVDGDEITFNVSIETEGRLIETWNSSGVPSTGEYAKKTSEIFEKKLKEMMDHLIVKLQKEYKADVAGFGKALSIQQPKTWRKVKDHWDETFSSSTIKIKFDLSITDFGSFTE
>NZ_CP009283.1|WP_039869975.1|905946_907977_+|beta-galactosidase
MINNKLPKIWYGGDYNPEQWDAPVWAEDERMFKLAGIDVATINVFSWAMIQPSEDTYDFSELDELMDRLYKNGTYVCLATGTGAHPAWMAHRYPEVTRVDVQGRKRKFGGRHNSNPNSQVYRKYSARLAGKLAERYKDHPALLIWHISNEYGGYDYSEESAAAFRVWLKERYGSLDRLNKAWNTKFWGHVFYDWEEIVVPNELSEEWNGNRTNFQGISLDYRRFMSHSLLECYKLEKEAIREHSTNIPVTTNLMGFYPELDYFEWAKHMDVISWDNYPALDTPVSYTAMTHDLMRGLKNGQPFMLMEQTPAQQNWMPYNSVKRPGVMRLWSYQAVARGADTVLFFQLRRSIGACEKYHGAVIEHVGHEHTRVFRECAELGRELELLGDELLDAVSAAQIGILYDWENRWALDLSSGPTVALDYVKEVHKYYDALYQQNIEADIIGVEEDLFKYKVVIAPVMYMIKPGFAAKVEAFVKAGGTFVTTFFSGIVNENDLVTVGGYPGELRKVLGIWAEEIDALLPEMSNEIVMNSDWGALSGSYTCNLLCDLIHSEGAEVLARYGSDFYKGMPVLTANSFGEGKAYYVASSPEAGFLHGFLANLAKENGIEPLVSAPEGVESVQRVKDGVSYLFLLNHNEGESIADIGGATRTDLLTGKAYSGTAVVPGRGVLILSDKN
>NZ_CP009283.1|WP_039869973.1|904989_905826_-|AraC-family-transcriptional-regulator
MITSLPRRIVFAREGGEHLPITLDSMGYNPDQEAVTRPDGYYVYHWLQTTSGEGIIHFENKKLTLSEGSGVLLLPGTPHKYEALSPQNWCTYYLTFGGSSARHILESAGMHSNSFYRWEHESPLTGMLQEMLDRHDAAADMFSLGVSADAYRFMLTLNKYGHLHNNTSISRNIDKLQPLLKWMDIHYGDPSIGLYDLAAQLDVSGRYLNSLFLQTFGLSPYAYFVRLRIRKSKELLVSKPAMTVKTISGLVGFRDVSHFVATFRKQSGTTPDQFRRLH
>NZ_CP009283.1|WP_052421174.1|902522_903476_+|LysR-family-transcriptional-regulator
MAASGGRNAVVDIGLLKVFQAVAKEGSISKAAQSLSYVQSNVTARIQQLEQELKTPLFYRHSRGITLTSAGQTLLEYTVRIFKLLEEAQQAVLDSPVPKGTIMIGSDTTAAVRLPVILSAYRSCYPDVEVQLQICRPADLIEAVLQHTVHGAFLDGPVDHPEIVQELVINEQLGLIIPDSMGYEGLHSVQGQTLLMLNAECLYRMRLEAWLREDGLKLGKVMEFGTMEGLMACVRAGIGYAVLPVSYFKRMNITQGISCHPFPDRYAEVPTVFIRRRDLYMTSAFREFIEVVKVHLPEAVCSDELSASASRAADAGK
>NZ_CP009283.1|WP_039869988.1|915822_916323_-|hypothetical-protein
MLTFEQKLAIFDSYPELERRDVSLGRVNYHFEESRHDKKTVASHLHPNGNGFVYAGLLRGYETDGKGLVNIRDYSEADLRELISASISSLSMYIPDAPAPSKRKKKAAASAGAETLWTNADGNTLSLKFEEDLWYLYAGLQLEMAFETIEEAEEYLAEEGFRPAGN
>NZ_CP009283.1|WP_039869990.1|916487_917897_-|HAMP-domain-containing-histidine-kinase
MDRMKKPRKRTSILTYWTLRYIIIISTGLLLTALLTFWWIQQEAMNNRMQTTGLLAQEIADRSLASDGTMQISPTLAKLVEDRKRFFKVSLEMCVIVTDPAGKLLFSDPPLTQEEMHYKLNDTLTDARSPEFKAAVAQIQEGSETLGQVIVLQSKRSLRHIPQEEILFFSIIILFLIILSWLTIYLLSGKLAKPIQRVAAAASQISNGEYNIILDTGAKEREIHELLVSFQEMSGKLQQFEQSRAVMLAGVSHELKTPVTSIKGLVHAVREGVVEGDEADEFLDIALQEAGRLQRMVADLLDYNALTAGIVAVRHDRIDAVPLLSEIVYQWGLTQAEEVKEPLLELPDKPLFVRGDPLRIQQIIVNLLNNSVQAAPAGQPLQLTVRLTAISQEYAELCIADDGPGISPDIRDRVFEAFFRSSSKQSQLRGLGLGLTFSRLLAEAMGGSLVLGEPPAEGCTFVLTLPLQP
>NZ_CP009283.1|WP_039869993.1|917884_918565_-|response-regulator-transcription-factor
MKSILIVEDEEAIARVLSAYLKKAGYHVTRAADGRTALEVFGVSPPSLILLDIMLPEMDGFELLDQIRKISSCPVIMLTARDGIKDRLAGLDGGADDYMSKPFIPEEVVARVNAVLRRPSQWSDGSGKRHFGSLFVDFSARSIFLNGAEVNLSPRDMSVLLFLAERPNQICTRDQLIEQVWEMDYDGSDRAVDLSIKRLRQALSHWPASEGEIRTLRGTGYQLWTE
>NZ_CP009283.1|WP_039869996.1|918735_919452_+|YceI-family-protein
MKKKTWIWAAAGVVAAGAITAFVLFNNSLGNNVEIESVIPAQEQTSANSGAAAANAPEAAGAAVTAEQLNGAWSVADTSKVYWSVTTSQETVNFVNPSVTGTWNVNLEDAAAMTGEGSIEMSALDSGNGQRDEHVKAADFLDAAQFPQSTFVVSSFSELPAEWTEGTAVPVQMQGTLTVKGIDKDVIFDSQVVYSGGQLMLSGTTTVTFADFGLTSPHNIVMETENDLEVRLELVLNK
>NZ_CP009283.1|WP_039878221.1|919601_921731_-|cell-division-protein-FtsI
MEDDPKPNQSLSLRINIFFFSTFIIFCIIIVRLAIIQFVEGSTLTEAEASRDTKNVPLASIRGTIFAKGGEKLAYSTSVQTLYFSLTSEFTQTVTDKETRITSRAPEAAAKADQLAADLAASFVKYGAKLPEGEALTKEAILKAMDLDSKVYSGFMPRPVKRGLSNEEIAYFMENKDKYPNLTVSEEDERHYDPDTVAVQTVGYIKPFKKSKESFDMYLNIQAAMRNEADPSLAYRDDEFVGVDGLELQYQRELRGRNGYLSVAVNAKNMAEGIVETVPPVKGNNLWTTIDKTIQMKTEQAILDQIKWVHSNPVQGKVHRDALTGYAVAMEVDTGNVVAMASMEDYDTNLWTTGTLPTEVYNAIQLNYQNGAITPISSGRSGHNFSSTVFLGSVIKPLTVLIGLNEGFITTHTSYTDKGSTTFGRAGHETTVRNSGGHAYGYFKTPAMAIEKSSNVFMIDEIGKKLFVKYGSEGVKVWDKYMREFGLGEKPGSGLPGEHKGLINYFNEADTDSGGGGAQSALVYASFGQQGQYTVLQLAQYASTLANQGVRIKPQLVSKITDQAGNTVKTFGREVLNEVKFDKAYWREVIKGMNTSVTAFNDFPYDFARKTGTSQQQYGITVNGKRSSHLADNGVFIAFAPRDKPKLAVAVVIPEGGFGSNSAAPVARKIFDAYDWEYGLDSIPKKSLPQPESTADVEAGDGADQEQTD
>NZ_CP009283.1|WP_039869998.1|921897_922281_+|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase
MIDVAAAIIHNEEGKLLIARRKPGKAQAGLWEFPGGKLEPGEDTVQCLVRELMEEMNIEIRPYEYFDCHEHDYGTVQIRLIAWKAEFVGGTFELTDHDAWSWAERSELAEYDFAPADVPFVKRLMEE
>NZ_CP009283.1|WP_039870000.1|922301_922625_+|nucleoside-triphosphate-pyrophosphohydrolase
MIKYNKLVRDGIPALIASQGKACTTRVMDNGEYIEALRAKLREEAEEYFKTEQDKQSLEELADLLEVIHALAAVHGGDREQLEQIRTEKAERRGAFTERIFLLQAEE
>NZ_CP009283.1|WP_039870003.1|922629_922980_+|hypothetical-protein
MFKNKMTFSLSIVAATVPVFFYMYLYRSMPDFVPVHYDGAVADRFALKGSYEIILISLLGWLGFGLIKLLQLLLRRLFLRSYIENLAVVHRVWNAATLLVTAGFSVLAIYTLLAMV
>NZ_CP009283.1|WP_039870004.1|923063_924065_+|Gfo/Idh/MocA-family-oxidoreductase
MTNDNAFKIKWGILSTGWIAHKFATDLAHAANGIAYAVGSRTQESADEFARNHGIPVAYATYEELVSDPEVDAIYIGTPHPFHKENALLALRAGKAVLCEKPFTVNSAELEEIVAYAREHKLFLMEAMWSRYIPANAKVREWVAAGRIGDVRLVKADLGFRADWNPQGRLLNPELGGGALLDVGIYPVSFASMILGPHPESVSSTVHIGETGVDEHFSLLLSYEGGKSASLNGGIRLKLTEEAHVFGTDGHIVVKGTLVNPRSAELYVGGELVEVFEDDRTSDGYCFEAEEVGRCLQAGLTESPVMTLDESVAIMKLLDQVRAEWGLKYPGEQ
>NZ_CP009283.1|WP_039870005.1|924161_925097_+|ADP-ribosylglycohydrolase-family-protein
MALIKDRYQGCLHGLAAGDALGTTVEFKAPGTFALMEDMIGGGVFGLQPGQWTDDTSMALCLAESLLEQQGFDPADQMQRYLSWFREGHLSSTGECFDIGNATREALLKYEAGGAAYSGSADPLAAGNGSIMRLAPVVLYYAANPAEAIRYAALSSRTTHGAAECLSACRLMAAYILAGLHGWSKQEMLAPGAFGGWLKEEELTPHILDIKRGSYKHKEPPEIQGSGYVVESLEAALWAFHHSESFAEGALLAVNLGNDADTTGAVYGQIAGAYYGLSGIPEGWVSKLAMRSLIDDYSLRLLDTKKNLREN

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Crispr_ID: NZ_CP009283_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009283_4

1072913-1072987

Orphan

Consensus_repeat	Method
TTAAATGTTCCCAAAGTAGGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009283_4

>merge|NZ_CP009283|4|1072913-1072987|CRISPRCasFinder
TTAAATGTTCCCAAAGTAGGCAGGGAGAGCGGAAGTAACGGTAAAAACCCCGTTAAATGTTCCCAAAGTAGGCAG

>NZ_CP009283|4|4|1072913-1072987|CRISPRCasFinder
TTAAATGTTCCCAAAGTAGGCAG	GGAGAGCGGAAGTAACGGTAAAAACCCCG
TTAAATGTTCCCAAAGTAGGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009283.1\|WP_047171022.1\|1077017_1078496_+\|cardiolipin-synthase	unknown	unknown	gnl\|CDD\|234967
NZ_CP009283.1\|WP_039870167.1\|1080679_1081627_-\|DNA-ligase	unknown	unknown	gnl\|CDD\|185715
NZ_CP009283.1\|WP_081957199.1\|1061148_1061859_+\|RNA-2',3'-cyclic-phosphodiesterase	unknown	unknown	gnl\|CDD\|274058
NZ_CP009283.1\|WP_039870151.1\|1062911_1064099_-\|UDP-N-acetylglucosamine--LPS-N-acetylglucosamine-transferase	unknown	unknown	gnl\|CDD\|340861
NZ_CP009283.1\|WP_039870157.1\|1074298_1075087_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|372253
NZ_CP009283.1\|WP_039870169.1\|1081660_1082632_-\|Ku-protein	unknown	unknown	gnl\|CDD\|238408
NZ_CP009283.1\|WP_081957204.1\|1078663_1079578_+\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_CP009283.1\|WP_039870159.1\|1075131_1075590_-\|polymer-forming-cytoskeletal-protein	unknown	unknown	gnl\|CDD\|377376
NZ_CP009283.1\|WP_039870149.1\|1060205_1061162_-\|D-2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240625
NZ_CP009283.1\|WP_156123779.1\|1082817_1082991_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039870156.1\|1073376_1074306_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP009283.1\|WP_081957202.1\|1075613_1076891_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_CP009283.1\|WP_039878247.1\|1067959_1072555_+\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
NZ_CP009283.1\|WP_144027141.1\|1064403_1064979_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP009283.1\|WP_039870148.1\|1058323_1060099_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP009283.1\|WP_039870150.1\|1061941_1062835_+\|cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|377847
NZ_CP009283.1\|WP_039870147.1\|1056698_1058108_+\|dNTP-triphosphohydrolase	unknown	unknown	gnl\|CDD\|223310
NZ_CP009283.1\|WP_039870154.1\|1065229_1067584_+\|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl\|CDD\|224428
NZ_CP009283.1\|WP_039870164.1\|1079769_1080654_-\|DNA-polymerase	unknown	unknown	gnl\|CDD\|182006
NZ_CP009283.1\|WP_039870146.1\|1055758_1056532_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|274287

Protein	Function_ID	Function_description	E-value
NZ_CP009283.1\|WP_047171022.1\|1077017_1078496_+\|cardiolipin-synthase	gnl\|CDD\|234967	PRK01642, cls, cardiolipin synthetase; Reviewed.	5.47938e-166
NZ_CP009283.1\|WP_039870167.1\|1080679_1081627_-\|DNA-ligase	gnl\|CDD\|185715	cd07906, Adenylation_DNA_ligase_LigD_LigC, Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of ATP-dependent DNA ligases similar to Mycobacterium tuberculosis LigC. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. Members of this group contain adenylation and C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains, comprising a catalytic core unit that is common to all members of the ATP-dependent DNA ligase family. The adenylation domain binds ATP and contains many of the active-site residues. The common catalytic core unit comprises six conserved sequence motifs (I, III, IIIa, IV, V and VI) that define this family of related nucleotidyltransferases. LigD consists of a central ATP-dependent DNA ligase catalytic core unit fused to a C-terminal polymerase domain and an N-terminal 3'-phosphoesterase (PE) module. LigD catalyzes the end-healing and end-sealing steps during non-homologous end joining.	1.71062e-67
NZ_CP009283.1\|WP_081957199.1\|1061148_1061859_+\|RNA-2',3'-cyclic-phosphodiesterase	gnl\|CDD\|274058	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase. This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. [Transcription, RNA processing].	5.56489e-39
NZ_CP009283.1\|WP_039870151.1\|1062911_1064099_-\|UDP-N-acetylglucosamine--LPS-N-acetylglucosamine-transferase	gnl\|CDD\|340861	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins. beta-diglucosyldiacylglycerol synthase (processive diacylglycerol beta-glucosyltransferase EC 2.4.1.315) is involved in the biosynthesis of both the bilayer- and non-bilayer-forming membrane glucolipids. This family of glycosyltransferases also contains plant major galactolipid synthase (chloroplastic monogalactosyldiacylglycerol synthase 1 EC 2.4.1.46). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	2.53257e-86
NZ_CP009283.1\|WP_039870157.1\|1074298_1075087_+\|ABC-transporter-permease-subunit	gnl\|CDD\|372253	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family.	5.333e-10
NZ_CP009283.1\|WP_039870169.1\|1081660_1082632_-\|Ku-protein	gnl\|CDD\|238408	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku. The alignment includes the core domain shared by the prokaryotic YkoV-like proteins and the eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs are predicted to form homodimers. It is proposed that the Ku homologs are functionally associated with ATP-dependent DNA ligase and the eukaryotic-type primase, probably as components of a double-strand break repair system.	2.21597e-123
NZ_CP009283.1\|WP_081957204.1\|1078663_1079578_+\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	5.65235e-85
NZ_CP009283.1\|WP_039870159.1\|1075131_1075590_-\|polymer-forming-cytoskeletal-protein	gnl\|CDD\|377376	pfam04519, Bactofilin, Polymer-forming cytoskeletal. This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.	1.06441e-26
NZ_CP009283.1\|WP_039870149.1\|1060205_1061162_-\|D-2-hydroxyacid-dehydrogenase	gnl\|CDD\|240625	cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants.	1.83625e-141
NZ_CP009283.1\|WP_039870156.1\|1073376_1074306_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.93138e-98
NZ_CP009283.1\|WP_081957202.1\|1075613_1076891_-\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.87936e-45
NZ_CP009283.1\|WP_039878247.1\|1067959_1072555_+\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
NZ_CP009283.1\|WP_144027141.1\|1064403_1064979_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.25952e-15
NZ_CP009283.1\|WP_039870148.1\|1058323_1060099_+\|HAMP-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	2.87118e-46
NZ_CP009283.1\|WP_039870150.1\|1061941_1062835_+\|cell-wall-hydrolase	gnl\|CDD\|377847	pfam07486, Hydrolase_2, Cell Wall Hydrolase. These enzymes have been implicated in cell wall hydrolysis, most extensively in Bacillus subtilis. For instance Bacillus subtilis steB is expressed during sporulation as an inactive form and then deposited on the cell outer cortex. During germination the the enzyme is activated and hydrolyzes the cortex. A similar role is carried out by the partially redundant Bacillus subtilis CwlJ. It is not clear whether these enzymes are amidases or peptidases.	1.16713e-35
NZ_CP009283.1\|WP_039870147.1\|1056698_1058108_+\|dNTP-triphosphohydrolase	gnl\|CDD\|223310	COG0232, Dgt, dGTP triphosphohydrolase [Nucleotide transport and metabolism].	3.08621e-88
NZ_CP009283.1\|WP_039870154.1\|1065229_1067584_+\|YhgE/Pip-domain-containing-protein	gnl\|CDD\|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	2.79622e-138
NZ_CP009283.1\|WP_039870164.1\|1079769_1080654_-\|DNA-polymerase	gnl\|CDD\|182006	PRK09633, ligD, DNA ligase D.	9.98096e-90
NZ_CP009283.1\|WP_039870146.1\|1055758_1056532_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|274287	TIGR02764, Probable_polysaccharide_deacetylase_PdaB, polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown. [Cellular processes, Sporulation and germination].	2.86525e-68

>NZ_CP009283.1|WP_039878247.1|1067959_1072555_+|glutamate-synthase-large-subunit
MRHTELPNKQGLYDPQFEKDACGMGFVAHIKGKPSHDIVSNALTMLFNMEHRGGQGSEPNSGDGAGIMLQIPHRFFAGEASKLGFELPEQGQYGVGMIFLSHNEEIRARHEALLSEIIAEEGQVVLGYRDVPTYDEMLGKTAKAAKPYVRQVFIGRSEGLADELAFERKLFVIRKRAELAIRYGGVEEAESFYMPSMSCRKIVYKGMLTTEQVGQFYLDLQNEELESAIALVHSRFSTNTFPSWERAHPYRFMIHNGEINTLRGNVNWMHARQSLFKSEVFGESLGKIKPIVNPDGSDTAMFDNTFEFLYLSGRSLPHVAMMMVPEPWSNHETMSDEKKAFYEYHSTLMEPWDGPAAMGFTDGVQIGAMLDRNGLRPARYYVTKDDMIILSSEAGVLDIPAEDVLYKDRLRPGRMLLVDTKQGRIISDEEVKASIASEQPYRQWLEEHLIGLDQLPEAPELPNPKHDNVQQLQQSFGYTFEDLRKVLEPMASTGAEAVGSMGYDAPLAVLSDRPQRLYNYFKQMFAQVTNPPIDAIREELVTSTATTIGPERNLLKPEPESCRQISLDSPILSNEDFAKIRHVRRAGFKSMSIPILFPAELGAEGMRIALDRMNEAADRVMAKGHNILILSDRGVDRENAAIPALLAVSSLHHHLIRSGSRTKVSILLESGEPREVHHYALLLGYGVSAVNPYLAFESLDDMIGQGLLRGISHEKAVKNYIKAATKSVVKILSKMGISTIQSYRGAQIFEAVGLSTEFVDRYFTWTPSRIGGIGLEEVAAEALSHHNRAFTEKDGNDKVLDSGGDYQWRSDGEDHLFNPQTIHMLQHSVRSGDYALYKKYAALVQGETKKHQTIRSMLEFKSVNQPVPLDEVEPAESIMKRFKTGAMSFGSISKEAHETLAIAMNRIGGKSNTGEGGEDPARFIPDANGDSRRSAIKQVASGRFGVTSNYLVNADEIQIKMAQGAKPGEGGQLPGRKVYPWVAEVRGSTAGVGLISPPPHHDIYSIEDLAELIYDLKNANPRASINVKLVSEVGVGTIAAGVAKGRADIILISGYDGGTGASPMNSIRHAGLPWELGLAETHQTLMLNNLRDRVVLETDGKMLSGRDLAVAVLLGAEEYGFATAPLVAVGCIMMRVCQMDTCPVGVATQNPDLRKNFTGDPQHVVNFMTFVAQDLREIMAELGFRTIEEMVGRTDCLDAVHASDHWKKKGVDLSSLLHTPELPEGSTRFRSKFQNHGLEETIDVSKLLDLAAPALESGQAVEVSLPITNVNRAVGTILGSELTRKYGAAGLPDDTIRLNFTGSAGQSLGAFVPKGITITVEGDSNDYVGKGLSGGKLIIKPSPKATFAAEDNIIIGNTALYGATGGEAYINGIAGERFAVRNSGANVVVEGVGDHGCEYMTGGRVAVLGATGRNFAAGMSGGIAYVYDPENSFIKRCNLEMVLLERVEEADEAAELHKLISRHAELTGSAAADRILGSWEASLPKFVRVIPKDYKRMLEQIRKVEQTGLTGEAALMAAFEANMRELARVGG
>NZ_CP009283.1|WP_039870154.1|1065229_1067584_+|YhgE/Pip-domain-containing-protein
MKSLSVFFKDLGAALKNPKVLIPMFVVLFIPVLYSGLFLKAFWDPYGKMNELPVAVVNEDNGAEYEGSRLTAGSDLVEELKKTDGFKWDFVTRAEAEAGLDDDTYYMAIIVPEDFSASATTLLEADPQPAKIIYEPNEGYNFLAGQIGGTAVKDIKTKVSAKITEAYTTSVFDKITEIADGLGDAGDGATQIADGAAKLDDGALKLKDNLLVLTEGTGKLVEGVAPLTEGVTALNNGAAALESGSSTLAGGLEQLSAAHKKLQAGVSQTADGSKQLSAGLKQSEAGAKALQTGTQSAVDGTAKLQAGTQSVVDGSAKLAAGLTDASEGSAKLEAGLQASKEGSAKVSAAAKAVSDGLQQLAKSNPQLAASADVQKLLAASAAVAEGTAQLDQSQQQLLAGATSLHSGHGQLVQGANQLQAGTQQLDAGVTQLHEGAQQLNAGSTQLLAGQQQLLAGAAKLETGGGTLSAGMQQFGAKLDEAAAGGAKLADGGKALEAGTSKLLAGAGQLSSGLSSVADGSKQLSDGAGQLKDGLDELKTGSGELASKLGDAATQTSTVNKSDALVAMFAQPVQIEEVKVSAVPNYGTGFAPYFLSLGLFVGALICTLVIPMSSSEVPGASRFNRFISRTLTFSMMSVLQSLMAAMIVLYGLGLEVQNVALFYAFTFITSISFMWMIQAIVTWLDQPGRFVVIVILIFQLTTSAGTFPLELIPGWMKFFNPLLPMTYSVRGFKAAISTGNYGMMWSDAGVLAIYGIVFLALTFTYFMTREQENEITVKGEQVLTV
>NZ_CP009283.1|WP_144027141.1|1064403_1064979_+|TetR-family-transcriptional-regulator
MAVVDRRQLVLQAATKCFSLFGYKATTMDQVAKIANVGKGTIYTFFTNKEQLFDEILRDVITEMKHIAEREIRRDKPFFDNLHRVLDALLEFRSEHELFIKLSQESRDFGTPQAGDGLDKLENVVLEYLEREVEQAVEQGEIKPCDPKIVSIVMFRLYIVLTAELNKVHVPLSKEQIKDYFHLFLTDGLAQ
>NZ_CP009283.1|WP_039870151.1|1062911_1064099_-|UDP-N-acetylglucosamine--LPS-N-acetylglucosamine-transferase
MRKKRVLLFSEGFGTGHTGAAYALAEGIRLLSPDVQCRVIELGKFLNPTVAPWILSAYRKTVSSQPKLVGMMYKTQYHKSLSRLTRAALHRVFYTRAKKVIEQLKPDLIICSHPIPAAVIARLKQQGLDVPLYTLITDYDAHASWVNPETDRYLVSTSRVKSVLTGRGVSPELVTVTGIPVHPKFWERSNKTLLRKELGLADIPTVLIMGGGWGLMFGQDVMDSLTARMDQIQLIFCMGSNDKLVARMRSTPLLNHPNVKILGYSNEINKLMDVSDLLITKPGGMTCTEGQAKGIPMLFYSAIPGQEEKNCQYFVELGLAEELNSRVVDKWFSMLLREYKGIEEQRRRRLAQERQQTHNCASAVLQLLGKTADVTAELRSTRAQARTEEAVYVTP
>NZ_CP009283.1|WP_039870150.1|1061941_1062835_+|cell-wall-hydrolase
MDIFKQNRCIALLVGVILVCFSAISLFSPGAITEGQNTQQLDTLGGAGYAAAAALTEQQPPTAERMNRTAASTPVFYTSAAGLSHIWQDKHKAGWFGPDKLKLAKAAVKQPEQPKATLMKAPPAVQTTLKQAAAKGNQTVKNVSTASQHNPPLKLFFSRTKLLSQEQQAEATWSYAVSDEDLLLLQKIVMAEAEGEPYQGKVAVANVVLNRLRSANYPDTIYEVIYQKSQFSPVANGRLKRVKPNEDSIKAVNAALSGVKEVTDDTYFFLSLQLAQDLTVHHSRTYAKTIGNHTFYK
>NZ_CP009283.1|WP_081957199.1|1061148_1061859_+|RNA-2',3'-cyclic-phosphodiesterase
MDLVMMVPSRYAIFVKMAEPVYNKDNKSAPKGEIPMENRLTGRDTERLFIAVKLPEEPAGLLGQEAAALSSRLKFAKWTYPDDYHITLQFLGDTPAAKIPELLAALEVISAGQEPFTLRLGEWGTFGAPESPRVLWAGVSGELEQLRNLQRKIVSATSPLGFKEEKRTYSPHLTLARKYRDERAFSSGLLSDLRSRTENIENNCSVKDWTIDAFVVYATRMHAIPMYEMIGKMTFF
>NZ_CP009283.1|WP_039870149.1|1060205_1061162_-|D-2-hydroxyacid-dehydrogenase
MTKSIVCLQPLTAQQQETILAAALGYTLTLGNAKSPDLDQLARAEIIIGWGKGISDTVLQSDSPLRWVQTWSAGVEKLPLGRLEERGILLTNASGVHAEPITAVIIGFMLMFTRNLHTALRNQLERKWHSDGKESELTGKTVVIAGTGSIGSETARIAKAFRMNTVGVSRSGKAVDGFDKVYTTAELRKAAEAADFLVNTLPLTDETQGLFNADVFNACPEGAYYINIGRGATTDTEALMAALNSGQLAGAGLDVFDPEPLPAGHPLWGMEQVIITPHCAGTTDRYADRIVELFTENVQAYLKDGKPSRNLVDYSRQY
>NZ_CP009283.1|WP_039870148.1|1058323_1060099_+|HAMP-domain-containing-protein
MGKERNRMDSVLQQAKGTVKKVMEARKKSVGAKVASGYAALAVLVLLIGGTSLYQMYNMQKNTGNIVEESIPALNQIHDINYYTEHVMALSMQHILNTDSAEKAKLEEQRVEVIRTVAEAMKLYRESLAGERGLEQLSALSDKWGEFMTINNQAIKLSDAGDEELALEVSQKGIDAFNAMQIDLEALVKYSQEGAEQEGRHSEETFHTSIIVNSVIIVLVLVVIGLINMIIRKTIINPIKTVTAHLQQIAEGDLTAEETLIRNEDEIGRLAKTVNDTNRTLLAIVSQIRNVSEIIARQGEELVRTVSGTKEGSSQIAVTMEELANAAGSQAESAVEASKAVEDLNRLISDFAAKGNELMQHSGQVRTRGERGRALMESSVAQMGQIAEVVSQSMDTVEELNRKNQGIFRLVGSIRSISEQTHLLAINAAIEAARAGDSGRGFAVVAQEVRKLSEDVQQTVSEITSITQGIQADSRDMVEQLREGVLKTEEGGRQILETGSALAEINQSVDVMAGTIENMGGDIERMAGASETMNEFSQHISALAQQSAAGVEETSASANEQVQATSEVAAGIGELRSRLVELEESVTRFRI
>NZ_CP009283.1|WP_039870147.1|1056698_1058108_+|dNTP-triphosphohydrolase
MTLIEKREHRQYPEVTRLETSRAAYERDYSRLIHSPTFRRLQGKSQVFGAGTGDYYRTRLTHSLEVAQIAREAAKSLLRSYPGIETGQADNPGLVIDPEVVECAAIAHDFGHPPFGHKGEEVLDNILEQLIAKKTAEEALKSGAGPVQKQTIEGNMKRQYEHFEGNAHNFRLIMFLEKRENIDGLNLSDAVLLGINKYPFPGTVLKKGMYLSEWNYISEIRKDWGIPDGKKTLEAQLMDLCDDIAYSAHDLEDGIKAGKIEVHEHFMHDAYIQRLIVEKITTLEDAFWKGWQPEAIHIKVEAVLSEFLRVWMEKMPTCENDYSRTRREVKAYWVSTFVASLGVIADGDWKKVTFIKEGAEDEDMLRTVSVLKSFAWVTMIRDLRVQRLQKRSEWILRRLWGAFNEPETSKAIIPSDWLQRFEKDQRQAKPIWTWEHMVIDYIAGMTDAFAEKIYNELYGLKVGSIYDLD
>NZ_CP009283.1|WP_039870146.1|1055758_1056532_-|polysaccharide-deacetylase-family-protein
MNSIRRLSAVLLIPLLLLISCRGHAHAFADIKNRQYHEQRGDMIWEVPISQKVIAFTFDDGPDPTETAQILDVLHEYNAKSTFFAIGKKIAAYPEIAGRVISEGHELANHTYNHVYFKRPTSVDQVMKELKQTEDEIVKVTGRHSSLFRPPGGMYDETLVKVSNLMGLKPVLWSWHQDTRDWNRPGVWSISSKVIKNARSGDIVLFHDYVHGQSQTHEALQIILPALEKQGYRFVTVSELIRLSASEKAAEGRQLAY
>NZ_CP009283.1|WP_039870156.1|1073376_1074306_+|ABC-transporter-ATP-binding-protein
MPVTAESANKPVASLMGVSKKIGSKTLVSDLTLDIPPGQIFGFLGPNGAGKTTTIRMMVGLISISQGDILICGRSIKDHFEEAVANIGAIVENPEMYKFLSGYQNLRQYARMVPGVTKQRIDEVVELVGLGQRINDKVKTYSLGMRQRLGVAQALLHRPKLLILDEPTNGLDPQGIRELRDYLRRLCQTEGTTVFVSSHLLSEMELMCDSVAIIQNGRLIDVKQLKAVGDAVLPVTETLFEVNDPEGALALLGQGVLKNGGISLIAGREEIAELNAALVAAGFKIYSIRALSRSLEDQFLEITGGEGIG
>NZ_CP009283.1|WP_039870157.1|1074298_1075087_+|ABC-transporter-permease-subunit
MGEFAALIHNENIKIYSRVRTWIMLFILALMSALFPALIYYTSTGDPSGTGVWDNFQMTVSISFFLNTIFAVVVASDTVASEFSWGTIKLLLIRPWSRSKILLSKYISVVLFSLLSTAVLIAFGYGSSLIFSRSDSSSLMNLMSWSPAEYSFMDVFCRYIELFLTTALAFMVSSVFRASGLAIGLSLFIMFTKNIFATLFSPERFEWANYLIFTHMDLRGYLISDTGPGGVSLGFSVAVLAAYYVLFLAVSWFVFKKRDVAA
>NZ_CP009283.1|WP_039870159.1|1075131_1075590_-|polymer-forming-cytoskeletal-protein
MWGRRKQVAPFRSTDSLIGHGGNLEGKVQCDTNLRIEGNFSGEIQCQGTVTVGEQGTVRSSIKAKAIIIAGKVYGDVTADQRLTMTETGQLHGNIMAGTLSIMEGSVLNGSIATAEPAAPPSSESRTGAGNASSADKAAKRAAKQQAKREAG
>NZ_CP009283.1|WP_081957202.1|1075613_1076891_-|M23-family-metallopeptidase
MSPADYCRSANSTALQGGVQPQEGEAMKTQHKDNRITLLVVREAGRPVRQLQLSKPLALVLPAAAALSISSLVTSMHFHASRSIAELEAEAAALSLANLRMEVKVADKDHTLQQLRSQVTELFEEAETIKDKLKSVSELEAQLQSLIETEEDSEADTDADRDSASTSGSIPAAESGNRLAAYTAAAAVNTRAAAAGGVHSSSAVTSLPAVSFRLGAVTSAIRSTVTPQVGGEYIAVYQDDPLGLVQEARDDYEEIRSLLDELLASLSATITEAKEVQSAEAQLQAKQALAEKARLAPAVIWPTRSKVITSSFGYRSDPFKGVSAYHSGIDIAGSIGDPIYAAMDGEVTASDQMGARGKYIIIKHANGLDTWYMHLNSMSVSEGERISKGQQIGTLGNTGRSTGPHLHFQVIKQNKAVNPLSYVKP
>NZ_CP009283.1|WP_047171022.1|1077017_1078496_+|cardiolipin-synthase
MSAELVCRDSGGGDGLKIIAVLLGLFVLQTAVILLLEYRRPQRALAWLFLSFCCPPAGLALYYFLGRDYWQSRRVSRRCTPAKRQEIRTHVSGKIKMVKKPEDCGNPAFTGREQLLRLLSGLSGMKITGRNHCRVLLNAGVAYAAMLEAMEAAREHIHLEFYIFRDDEIGEQFQDTLIRKARQGVKVRLLCDGLGSHGLSRRFIRTLKNAGVEMHFFLPPLISLLERRFNYRNHRKIVVVDGLVGFTGGMNVGDDYLGKDPKMGYWRDTHLQLEGDTVYDLQDVFLKDWKLAAGELLSHPRFFPEHHCKGEEAALIVASGPDGAIDASQGMFFGALCAARRRIWITSPYFIPDPAICRALKNAVLGGVDVRIIIPGKPDNKLVYAASLSYLENLQDAGVKFYRYTAGFMHAKVMIIDDLLAAAGSANLDMRSFYSNFELTAVLLAPDTVAGLAEAFEKDLKHSEFIDPDKFMRRGRNVKLIQGLCQLLSPLL
>NZ_CP009283.1|WP_081957204.1|1078663_1079578_+|YitT-family-protein
MNVSQQIFTSEDEKKPLKAGSMKAARLRLAHRIIMMVLGAGMMSVALEIFLVPNELIDGGITGISIMLSHIFHIPLGILLTLLNLPFLIIGYKQIGKTFALSTLFAVVVMSIGTQLLHPVNPITVEPLLAAVFGGVILGVGVGLVVRYGGSLDGTEIVAILVAKKLPFSVGEVVMFFNFFILSGAGFVFGWNNAMFSLIAYYIAFKMIDITLEGLDQSKSVWIISDKFRDIGEALTERLGRGVTYLDGEGGFSGENKKVIFVVITRLEEAKLKSIVEDWDSDAFIAIGNIHDVKGGRFKKKSIH
>NZ_CP009283.1|WP_039870164.1|1079769_1080654_-|DNA-polymerase
MPAALKGTIVIDGQEITVTNPDKPLWPEMGITKRIYLQKLAALSPYLLHYCRNRLLTVIRYPHGVPGMSFYQKNAPQPRPAFIRTAVQDGIEYIVLHGLPELLWLGNLAALEFHPSLHYEGSDLPCEWMIDLDPSLEVEPRIMEAAALVGEVLKSLGLASVPKTSGATGVQIIVPVRQGITFEELRKTGHFIGRYVTEKRPDLFTLERLKKNRGDRIYFDYLQHYGGKTLAAPYTPRARPGATVSTPLLWEEVARNVSPLDFHLLNIEERLARTGDLIAKVPPQPVGEIAAKLP
>NZ_CP009283.1|WP_039870167.1|1080679_1081627_-|DNA-ligase
MDLKPVKPFEPMLAAQLPAGSQWIAQIKWDGVRMLSYYDGGPIELVNRRGNRRTMQYPELTAEGRYCRADSYILDGEVIALSGGKPSFHEVMRRDGVRSEAAVRAVQPQVPVLYMVFDILYCNGEWLLDRPLSVRQQILRDVLLPHPHVQNVPSYSDPAQLFAAACSGGLEGIICKDTGSTYAPGGKDARWLKRKNILDVTAVAGGVTFRDGIVNALLLGLYDDEGRLHYIGHAGAGRMTAADWRNLTAQAHSLALPSSPFAAMPERSKDAVWISPTLVFKLHFLEWNPSGTLRQPVIQAQVDLPPDACRLEQRG
>NZ_CP009283.1|WP_039870169.1|1081660_1082632_-|Ku-protein
MHTVWKGAISFGLVHVPVKMFSATEDKDISLRYIHKECGSPLSYVRKCPVCEKEVNWEEIGKGYEYEKGKFVLFDKEELEQLTEESSKSITILDFVDLTEIDPIYFQKTYYLSPDQAGSNAYRLLMEAMRQTGKIGIAKISIRSKSSLAAIRVLENCLAIETIFYPDEVRPVTQVPGLPEAGIVSDKELEMAKLLISQLSTPFEPGKYTDDYRQRMLDLISHKISGEEFHIAPARQESNVIDLMAALQASIEAVQHIPSDPGTAPAAAAGKSKSAAGTRKRTVKASGAEAVPGTPVISEATGPIPVIAPKAKRRSTKSKETVS
>NZ_CP009283.1|WP_156123779.1|1082817_1082991_+|hypothetical-protein
MDEERKEWLDDLSEQDIPAEVVDWSGIVGDPDEEDSGPEAGYLDAEDTIGEPEADEV

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Crispr_ID: NZ_CP009283_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009283_5

1128437-1128531

TypeV

Consensus_repeat	Method
CTTCCTGTATTACCTTCGGCAAAACTCGCTTC	CRISPRCasFinder

1 spacers

cas14j

The CRISPR arrays of NZ_CP009283_5

>merge|NZ_CP009283|5|1128437-1128531|CRISPRCasFinder
CTTCCTGTATTACCTTCGGCAAAACTCGCTTCGGAAGCAGACGCTTAGTTTTGTTAGCATAAGCTTCCTGTATTACCTTCGGCAAAACTGGCTTC

>NZ_CP009283|5|5|1128437-1128531|CRISPRCasFinder
CTTCCTGTATTACCTTCGGCAAAACTCGCTTC	GGAAGCAGACGCTTAGTTTTGTTAGCATAAG
CTTCCTGTATTACCTTCGGCAAAACTGGCTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009283.1\|WP_039870214.1\|1133004_1134000_-\|class-II-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236536
NZ_CP009283.1\|WP_039870201.1\|1124293_1124803_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP009283.1\|WP_039870203.1\|1124904_1125636_+\|ZIP-family-metal-transporter	unknown	unknown	gnl\|CDD\|223505
NZ_CP009283.1\|WP_039870206.1\|1126360_1127269_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381312
NZ_CP009283.1\|WP_039870197.1\|1118517_1119657_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187556
NZ_CP009283.1\|WP_039870198.1\|1120899_1121976_+\|cobalamin-binding-protein	unknown	unknown	gnl\|CDD\|227345
NZ_CP009283.1\|WP_047171023.1\|1119765_1120761_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|376578
NZ_CP009283.1\|WP_039870208.1\|1127413_1128403_-\|glyceraldehyde-3-phosphate-reductase	unknown	unknown	gnl\|CDD\|381377
NZ_CP009283.1\|WP_039870219.1\|1138450_1139056_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039878261.1\|1136887_1138312_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP009283.1\|WP_039878258.1\|1129760_1130843_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14j	-	gnl\|CDD\|223747
NZ_CP009283.1\|WP_039870210.1\|1128649_1129498_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380391
NZ_CP009283.1\|WP_039870212.1\|1131685_1132867_+\|YsnF/AvaK-domain-containing-protein	unknown	unknown	gnl\|CDD\|131324
NZ_CP009283.1\|WP_039870218.1\|1135717_1136668_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|183067
NZ_CP009283.1\|WP_039870199.1\|1122000_1123686_+\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NZ_CP009283.1\|WP_042198045.1\|1131033_1131345_-\|(2Fe-2S)-ferredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239278
NZ_CP009283.1\|WP_039870204.1\|1125775_1126069_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039870196.1\|1118025_1118358_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039870216.1\|1134065_1134866_-\|kinase/pyrophosphorylase	unknown	unknown	gnl\|CDD\|377080
NZ_CP009283.1\|WP_039870217.1\|1134884_1135541_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|341387

Protein	Function_ID	Function_description	E-value
NZ_CP009283.1\|WP_039870201.1\|1124293_1124803_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.20256e-10
NZ_CP009283.1\|WP_039870203.1\|1124904_1125636_+\|ZIP-family-metal-transporter	gnl\|CDD\|223505	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism].	3.43939e-37
NZ_CP009283.1\|WP_039870206.1\|1126360_1127269_-\|aldo/keto-reductase	gnl\|CDD\|381312	cd19086, AKR_AKR11C1, AKR11C family of aldo-keto reductase (AKR). Bacillus subtilis uncharacterized oxidoreductase YqkF is a founding member of aldo-keto reductase family 11 member C1 (AKR11C1). It may function as oxidoreductase. This family also includes Bacillus halodurans AKR11C1, an NADPH-dependent 4-hydroxy-2,3-trans-nonenal reductase.	2.73639e-107
NZ_CP009283.1\|WP_039870197.1\|1118517_1119657_-\|hypothetical-protein	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	6.79462e-15
NZ_CP009283.1\|WP_039870198.1\|1120899_1121976_+\|cobalamin-binding-protein	gnl\|CDD\|227345	COG5012, COG5012, Predicted cobalamin binding protein [General function prediction only].	9.15325e-38
NZ_CP009283.1\|WP_047171023.1\|1119765_1120761_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl\|CDD\|376578	pfam01625, PMSR, Peptide methionine sulfoxide reductase. This enzyme repairs damaged proteins. Methionine sulfoxide in proteins is reduced to methionine.	1.28157e-85
NZ_CP009283.1\|WP_039870208.1\|1127413_1128403_-\|glyceraldehyde-3-phosphate-reductase	gnl\|CDD\|381377	cd19151, AKR_AKR14A2, Salmonella enterica aldo-keto reductase (AKR) and similar protein. Salmonella enterica AKR is a founding member of aldo-keto reductase family 14 member A2 (AKR14A2).	0
NZ_CP009283.1\|WP_039878261.1\|1136887_1138312_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	4.04287e-123
NZ_CP009283.1\|WP_039878258.1\|1129760_1130843_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.37186e-55
NZ_CP009283.1\|WP_039870210.1\|1128649_1129498_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|380391	cd06986, cupin_MmsR-like_N, AraC/XylS family transcriptional regulators similar to MmsR, N-terminal cupin domain. This family contains bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included is MmsR, a bacterial transcriptional regulator thought to positively regulate the expression of the mmsAB operon. The mmsAB operon contains two structural genes involved in valine metabolism: mmsA which encodes methylmalonate-semialdehyde dehydrogenase, and mmsB which encodes 3-hydroxyisobutyrate dehydrogenase. The cupin domain of members of this subfamily does not contain a metal binding site.	9.45184e-30
NZ_CP009283.1\|WP_039870212.1\|1131685_1132867_+\|YsnF/AvaK-domain-containing-protein	gnl\|CDD\|131324	TIGR02271, Stress_response_protein_YsnF, conserved domain. This model describes an uncharacterized domain, sometimes found in association with a PRC-barrel domain (pfam05239, which is also found in rRNA processing protein RimM and in a photosynthetic reaction center complex protein). This domain is found in proteins from Bacillus subtilis, Deinococcus radiodurans, Nostoc sp. PCC 7120, Myxococcus xanthus, and several other species. The function is not known.	3.5655e-38
NZ_CP009283.1\|WP_039870218.1\|1135717_1136668_-\|EamA-family-transporter	gnl\|CDD\|183067	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional.	1.03708e-26
NZ_CP009283.1\|WP_039870199.1\|1122000_1123686_+\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	2.40105e-88
NZ_CP009283.1\|WP_042198045.1\|1131033_1131345_-\|(2Fe-2S)-ferredoxin-domain-containing-protein	gnl\|CDD\|239278	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.	3.30517e-23
NZ_CP009283.1\|WP_039870214.1\|1133004_1134000_-\|class-II-fructose-bisphosphatase	gnl\|CDD\|236536	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed.	0
NZ_CP009283.1\|WP_039870216.1\|1134065_1134866_-\|kinase/pyrophosphorylase	gnl\|CDD\|377080	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase. This family of regulatory proteins has ADP-dependent kinase and inorganic phosphate-dependent pyrophosphorylase activity.	2.49505e-129
NZ_CP009283.1\|WP_039870217.1\|1134884_1135541_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|341387	cd04617, CBS_pair_CcpN, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains of CcpN repressor. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	6.16446e-59

>NZ_CP009283.1|WP_039870208.1|1127413_1128403_-|glyceraldehyde-3-phosphate-reductase
MYIANPERYNQMKYNRTGRSGLLLPAISLGLWHNFGGNDLFENGRAMVRRAFDLGITHFDLANNYGPPPGSAEENFGRILRQDLAAYRDELIISTKAGYYMWPGPYGEWGSKKNLVASLDQSLKRMGLDYVDIYYHHRPDPNTPLEETMAALDLIVRQGKALYVGISNYRPAEAREAAQILRRLGTPCLIHQPNYSMMARWIEDELQDVLAEEGIGTIAFSPLYKGILTDRYLNGITSDSRAAGPSVFLSEKEITEEVIGKVSRLNDIAAARGQKMSQLALSWVLRGGKVTSALIGASKVSQIEDAVASLNAPELTADELEQIETILRG
>NZ_CP009283.1|WP_039870206.1|1126360_1127269_-|aldo/keto-reductase
MNKNRLGQSDLYVSAMGLGCMSLGTEEAPAVSIIHEALDRGINFLDTADLYDAGRNEELVGTALRGRRSDVILATKVGNRRIPGRDGWSWDASKAYIKSAVHDSLRRLQTDYIDLYQLHGGTMEDNIDETIEAFEELKQEGLIRYYGISSIRPNVVREYVKRSKIVSVMSQYSILDRRPEESILPLLEQHGISLIARGPLARGILTENGRSRLEKDYLDYTAAELAALHEELTRQASAPRTLTQTALHYPLSQPAVAAVIPGASSPEQLRANIAAASAAPLNAAEADAVRQASKAGVYTAHR
>NZ_CP009283.1|WP_039870204.1|1125775_1126069_+|hypothetical-protein
MDRLAIQASLSFILLVISYLSLYYALPKRTTFARYSTLVLLIASGAPLAVLLVQESLREAQDANIGLGMAFLLTWAISGVVLLVSLVLWILRLRKRR
>NZ_CP009283.1|WP_039870203.1|1124904_1125636_+|ZIP-family-metal-transporter
METALLGSFLSAMATVLGAVPILFVRRLSERWKDILVAFTAGIMVSASTFGLMPQAINESGIIALTLGLITGVLMLDLIEKNIPHIDVENKPGFANMDSKALLVMIALFIHNIPEGLSTGFSYASEEASLGPMVAIAIGAQNMPEGLILAVFMMNSKSTRWKALGVAALTGLMEMISAVVGYFAASSLEHAVGYGLAFAAGAMLFIVYKELIPESHGHGYERPSTYSFIFGLLAMVYITQFFG
>NZ_CP009283.1|WP_039870201.1|1124293_1124803_+|GNAT-family-N-acetyltransferase
MYIRMLDQADAEQYRELRLQALRLHPEAFLSSYEEEKELPLDTTRSRLEPTEDKFTLGAFNTEHELAGVVTFIREGREKIRHKGNVFAMYVSPAARGQKLGFALLTELLARVRQITGLAVINLTVMADNLPAKRLYSALGFTCYGTERDAVRLADGRHLDEHLMTLVLS
>NZ_CP009283.1|WP_039870199.1|1122000_1123686_+|response-regulator
MTGSEQEIRVLRETIENLSEQLIAGKHREEQALSEFSAMNNELITMHRLLAKNVAELKALKEEAEAASRAKSLFLATVSHEIRTPMNGILGITELLEAEGGNGEQQSHLQVIRESAQYLLQMIRNLLDFSKMEAGKMEIGRMSFSIQELIEHALRLLSPAAAKRENSLTYQIMSGVADRLEGDSPKILQVLINLLGNAVKFTQKGKVEVRVSLTAEDEARQRLCFEVRDEGIGISPEDQASLFRPYSQVGRDAELSAEGTGLGLSICKSMIELMGGTISADSTPGQGSIFRFELTLDKLALLAEPLKPAEAGLQESRFSKLPVLVAEDNGLNSTVLLRQLQRLGVQAVHLAGNGQEAVEAWQRQEYGLILMDSRLPVMNGPEAVRAIRQLEASGARTRVPIIGVTGDEDGDSRSQFMGAGLDDWTVKPLSLQTLGKLLAKWYGRKPYIPVLQEETLAGIREMDGEDEPELLHMLAAIFNKDTPLRLAALEEAAARQDLAEMAAAAHNLKSGSLSIGAQYFAHLCALVERHARAGEYDQAAVQLPKLGPAYSEACRELDKLL
>NZ_CP009283.1|WP_039870198.1|1120899_1121976_+|cobalamin-binding-protein
MYTNQQNAGERLKMIAEQLAEEVTLRQYERQPDLRQRFGPSGIARTRQDSLYHLRYLAQSVSLESPLLFIHYIIWLKVLLMQYKITAEDLRINLELMKDAITAEVKPPDREVILSYLEMGMYHMRGEESVPSFLQPDRPYYREAEQYLGLLLDGQRRQAAEFIMRLYDDGIPVQDIYLHLFQQSQYEIGRLWQLGRITVAQEHFCTACTQSIISQLYPRWIQAQSGRKRLVATGVGEELHEIGLRMLTDFFEMEGWNTFYLGSNMPAESLIRYLKEQPADLLAVSVTMTFHVSEVVRLIGMIRSHGELDGLKIMVGGMPFNIDRDLWKKVGADGYAPDAGTALEVAEQLIPGTRRREN
>NZ_CP009283.1|WP_047171023.1|1119765_1120761_+|peptide-methionine-(S)-S-oxide-reductase-MsrA
MDKLQAAGQRYELATFAGGCFWCMVKPFDELPGIVSVVSGYTGGHTEAPTYTEVGTETTGHFEVVQTTFEPELFPYRRLLEIYWQLIDPTDRSGQFMDRGHSYRTAIFVHSEEQRAEAEASKAALQAEKRFKGPVVTDILPAAPFYPAEAEHQDYYKTHPLDYKLYLKGSGRDDFLERHWQRREDRERLHYRLTALQIEVIRNKGTEPAYDNAYWDEYRDGIYIDVLNGDPLFSSIDKFDSGTGWPSFTAPLEPGLIRREADLSSGAPRTVLRSRLSGAYLGQLLYDGPEPAKLHYRANSAALRFVPLEEFAANGLERYQALFAAGDQASY
>NZ_CP009283.1|WP_039870197.1|1118517_1119657_-|hypothetical-protein
MKPANTACKETIESANGDNKKAGPAASRRETVAVTGAAGCPDHQLSAILTGHYDVIALSCEKQKALDQRRDKVQAHSHVQWRPCDLFSLPSAEKALEGADYAIYFLHRPQRPARLTQADTADMNAIQADYFARAALKNGIKHILLLLNTVSADNLNSQLQGCLETERILASYGLPFTTLGTRQQAGTVHDSRPVPAELADAGRALLMAAAGVALSGKQAGAPAKSSAAKTGPFPDVRSIQRVVLPGDTDAAWAARYYTDWLGSLLKPLIRIDYHDSEDRYRLCLRAFRRPILELTCQPLQSSPQHTVFRISGGILTKQRDPYEGRLAFLQIPGSRECIIAIHDYQPSLPWFLYKHTQARVHLLVMSAFRRHLRRINSRR
>NZ_CP009283.1|WP_039870196.1|1118025_1118358_+|hypothetical-protein
MAIVDLILITLEVAVFIVFAAYVLRYRTFFIGKGPNRTYNLYLRSVWMTYFMVSLLCINLLWGRLNIVFGYNVDSVSNTIRELVMILTLILLLFAGLTHKDLWDINEQDK
>NZ_CP009283.1|WP_039870210.1|1128649_1129498_-|AraC-family-transcriptional-regulator
MAIFKYNPQRPFRSSPDLHLHYWGFEHCASGHTVGPGVRDLYKIHFIHAGTGTVAVGEAEHRLQAGQAFLTYPHIVTRYAADSAEPWTYSWIAFTGEEVESLLSRTSLTPEQPVFPMDQQLMPALYDRLTAAADTAEGLDLPLKAIMYEFFAVLLRTAPAAADSLRPSRAKSFYVEECLHFLHAHYCENITVEMLSASLKLDRKYLSALFKRTVGLPPQQYLLNFRIAKACELLAETGCTVGEIARSVGYQDPLLFSRMFKKVKGCSPKDYRSRHANNDIVL
>NZ_CP009283.1|WP_039878258.1|1129760_1130843_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MHQAYKYRIYPTPEQQQLIRRMFGCCRFVFNTFLDTWNQSYAETGKGLSYHACATKLPALKAQYDWLKEVDSIALQSAARHVADSFDRFFKKQNQVPRFKSRKHPVQSYTTKFTNGNIAIEGSRLKLPKLGWMRFANSRKLEGRILSATVRQNASGKFFVSLGCEVEKNPLPQVDAHIGIDLGLKEYAVISNGERYANPRFYRQYEKKLALWQRRMARRTPGGSNWKKAKQHVARIHERIANKRNDFLHQLTTKLIRENQTISIEHLRVANMIQNPKLSKSIADASWGEWVRQLTYKALWYGRTLRIADTFEPTSQRCHVCGTIHPEVKNLAVREWTCTVCGTLHDRDENAAHNIAQVAV
>NZ_CP009283.1|WP_042198045.1|1131033_1131345_-|(2Fe-2S)-ferredoxin-domain-containing-protein
MNMRLKVLKKHLLFCCSEHCNNQEVEDVMQAFKEQLVEQGINKTVKINKTSCLGLCGNGPFVIVYPDGIWYYNVTTEDVPRIVEEHLVGGEPVDELVMLKMEA
>NZ_CP009283.1|WP_039870212.1|1131685_1132867_+|YsnF/AvaK-domain-containing-protein
MNRKIVGVFHTEYEASQAIEDLKSHGFLTEDISVIARNKKDVEAISDETGTKAPEGMASGAATGGLLGGVTGLLAGIGALAIPGIGPIIAAGPIAATLTGAAIGAGTGGLVGGLIGLGIPEDEAESYNNYVDEGRILVMVDADEARLSDVYSVFRNHNSANAERYIEDTGAAGSRRAAADDSVSDVVDAAFNGSGLEGRNDTGLDTMNSAPVHDLPDKRAHEDIDQPGMKADLYSGTPDGMGKHVDSRSSLAFENEDDEARRLRLREEQLDVSKNKVQTGEVSVRKEIIEEQKTINVPVSHEEIVIERRSVNNDSSTKPVGADETIRIPVSEEQVEVHKNTVVTGEVDIHKREVQGTEQVKDTVKREEARVDKTGDVKVNASDELLRDHSRTR
>NZ_CP009283.1|WP_039870214.1|1133004_1134000_-|class-II-fructose-bisphosphatase
MERELALEIVRVTELGALASARWIGRGDKNAADDAATTAIRSMFDSVSIDGTVVIGEGEMDEAPMLYIGERVGTKNGPAVDVAVDPLEGTEVVACGLHNAQSVIAIADRGSLLHAPDIYMEKLACGPELAGRLSLDDSAEVTLRKASMITGKALSELTVMVLDRKRHEELIGTLRELGVRIRLLGHGDVAGAIAAALPDSDVDLYMGSGGAPEGVLAAAALKCLGGELQGRLLPEGPFELQRCLMMGLDNPARVLSMEDMVGTGDVIFAATGVTSGEFLSGVRFIGKERAETHSVIMRAQSRTIRYIRSIHFLPGKDIPQGVSDRQNVAFM
>NZ_CP009283.1|WP_039870216.1|1134065_1134866_-|kinase/pyrophosphorylase
MEQSSHYITICSDSIGDTAEAVVQAVIHQFQNQRVTIRRYGNVRHEDELRRLMEETAQLQGFVAYTLVQPELREMIREEAVRLDLRIVDIMGPMMQAFIDTFDDAPQARPGLLHQLDENYFRRIEAIEFTVACDDGRDLGAMLKADIVLLGMSRTSKTPLSIFLAHRGKKVVNYPVVPEIAPPQQLLSLPPSRIIGLTMKPEYMLKIRSERLKMLGLPAGSQYASLERINEEMEYAAVLFKKLGCPVIDITDKAIEETAGIIMGHL
>NZ_CP009283.1|WP_039870217.1|1134884_1135541_-|helix-turn-helix-transcriptional-regulator
MEGPAIELTSRQLQIIEIVKKRAPISGDQIAESLNLSRPTIRNDLSILVMLEYIDAKPKVGYFPGQRSVAHLGSGYLLRETKVKDIQSIPVVIRETTTIQDAVVTLFLQDVGTLIICDGDGRLAGVASRKDFLKVTLGNPGAVSMPVSMVMTRVPKVVTVSPDEPVLDAAHKMIFHEVDSLPVVVPGSAEDSVSGLAVTGRLTKTSIVKLLLDLEAKG
>NZ_CP009283.1|WP_039870218.1|1135717_1136668_-|EamA-family-transporter
MIMLAYSLVCLIFGTTFLAIKIGVDAGAPPFFSAGIRFFLAGAVLFLWMVLKGKASFSLLLRKEMLITGAALTFGTFSALYWAEQYVSSGLAAVLSATGPMMILLMQTAVLRQKAPSYSMLGCIIGFTGVLLLVLPSLVVDVSPLWITGCIVVLIGECCYAAGAIYSKKVITAFSGVSPVALNAAQMMYGGVLLFLLSLAAEPWHPEVLFSLKTAGSLLYLTVIGSMVGHTLFYWLVAKTNPVFPSTWLYISPPIAVGVGYLFYNEAVTWLTLLGVFTIIAGTVLVNAGALKELLFKKKPQPAVIPAPKLDAAAQE
>NZ_CP009283.1|WP_039878261.1|1136887_1138312_+|PLP-dependent-aminotransferase-family-protein
MKKQANLEQSHPLFRQVYDYMVNRIVREEWKVHDKLPSIRVLAEELQVHRLTVFKAYRELASSGRVYVKDKSGYYVSPAGMLREERADPNADTAAVPVYSLTNPMSDIQRMPVKYQFSQALIDPGLLPNLFLSDYVKKVFDLYPKVMGTYSSVQGDLELRGVLSRHYQEHYKLQLSPQELLITSGAQQAINLIAGLVLGPMDHVLVERPTYSVALDIFRRAGARLLPVTITPEGYDLEAVEELMRTYRPRMFYINPTHHNPTGYTVPARQRKLLVELAERYRCLLVEDDPFRDIYFGEAPPAPFFAYDTEGWVIYISSFSKYVAPGLRICAVACRHPFMERLITAKSMADNGSPLLNQKIFLHYYTSPRLQQHLGKLRIALQVHKEIMEEELAGSGWEWSAPEGGLNLWIRLPDSVSAAALLQRSMEHSISFVPGALCDPLGEMTSWLRLSYSFASENMLREGMRKLMQLAREL
>NZ_CP009283.1|WP_039870219.1|1138450_1139056_+|hypothetical-protein
MRGRNAFELAGSGLLGGMRGRNASEWAGSGQPGEMRGKNTFELAGSGLPGGMRGKNASELAGNVLRGEMRGIKAFELAGNVLRGGMRGKKASELAGSWLPGRMRGINAFELAGSGLRGEMRGINASELAGNGLRDEMRGKNAFELAGSWPRGGMRGKNASELAGSWLPGRMRGKKASEWAGNMLRVGMRGKNASELAVCCR

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Crispr_ID: NZ_CP009283_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009283_6

1777543-1777748

Orphan

Consensus_repeat	Method
GCCCGCTATCAAAGGGAAAAATCCCATTAAATGAGCGAGAACCCCGGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009283_6

>merge|NZ_CP009283|6|1777543-1777748|CRISPRCasFinder
GTCGGCCACCAAAGGGAAAAATCCCATTAAATGAGCCAGAACCCCGGTTGGGGCCCGCTATCAAAGGGAAAAATCCCATTAAATGAGCGAGAACCCCGGTTGGGGCCCGCTATTAAAGGGAAAAATGCCGTTAATGAGTCAGATCCACGGTTAGAGCCCGCTATCAAAGGGAAAAATCCCATTAAATGAGCCAGAACCCCGGTTGG

>NZ_CP009283|6|6|1777543-1777748|CRISPRCasFinder
GTCGGCCACCAAAGGGAAAAATCCCATTAAATGAGCCAGAACCCCGGTTGG	GGCCCGCTATCAAAGGGAAAAATCCCATTAAATGAGCGAGAACCCCGGTTGGGGCCCGCTATTAAAGGGAAAAATGCCGTTAATGAGTCAGATCCACGGTTAGA
GCCCGCTATCAAAGGGAAAAATCCCATTAAATGAGCCAGAACCCCGGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009283.1\|WP_039871101.1\|1779766_1782445_+\|family-78-glycoside-hydrolase-catalytic-domain	unknown	unknown	gnl\|CDD\|379971
NZ_CP009283.1\|WP_039871087.1\|1768744_1769569_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP009283.1\|WP_039871104.1\|1783403_1783961_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379082
NZ_CP009283.1\|WP_039871076.1\|1762885_1763668_+\|phosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213223
NZ_CP009283.1\|WP_052421223.1\|1786841_1787702_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP009283.1\|WP_039871094.1\|1773475_1774357_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP009283.1\|WP_039871080.1\|1763660_1764476_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
NZ_CP009283.1\|WP_039871092.1\|1772082_1773360_-\|glycoside-hydrolase-family-27-protein	unknown	unknown	gnl\|CDD\|269893
NZ_CP009283.1\|WP_052421222.1\|1766695_1768633_+\|DUF393-domain-containing-protein	unknown	unknown	gnl\|CDD\|214802
NZ_CP009283.1\|WP_039871111.1\|1789429_1791814_+\|alpha-L-arabinofuranosidase	unknown	unknown	gnl\|CDD\|226064
NZ_CP009283.1\|WP_039871086.1\|1765361_1766243_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235139
NZ_CP009283.1\|WP_039871102.1\|1782511_1783390_-\|EamA-family-transporter-RarD	unknown	unknown	gnl\|CDD\|225510
NZ_CP009283.1\|WP_039871090.1\|1769703_1772016_+\|glycoside-hydrolase-family-2-protein	unknown	unknown	gnl\|CDD\|225789
NZ_CP009283.1\|WP_039871109.1\|1784431_1786816_+\|glycoside-hydrolase-family-95-protein	unknown	unknown	gnl\|CDD\|379625
NZ_CP009283.1\|WP_039871084.1\|1764492_1765299_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
NZ_CP009283.1\|WP_052421224.1\|1787897_1789097_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP009283.1\|WP_039871107.1\|1784098_1784317_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039871098.1\|1778675_1779557_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP009283.1\|WP_039871096.1\|1777775_1777985_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039871095.1\|1774487_1777154_-\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319781

Protein	Function_ID	Function_description	E-value
NZ_CP009283.1\|WP_039871101.1\|1779766_1782445_+\|family-78-glycoside-hydrolase-catalytic-domain	gnl\|CDD\|379971	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.	8.86307e-142
NZ_CP009283.1\|WP_039871087.1\|1768744_1769569_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.00147e-25
NZ_CP009283.1\|WP_039871104.1\|1783403_1783961_-\|AAA-family-ATPase	gnl\|CDD\|379082	pfam13238, AAA_18, AAA domain.	5.04131e-05
NZ_CP009283.1\|WP_039871076.1\|1762885_1763668_+\|phosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213223	cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	2.87372e-127
NZ_CP009283.1\|WP_052421223.1\|1786841_1787702_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	4.2805e-28
NZ_CP009283.1\|WP_039871094.1\|1773475_1774357_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.79106e-28
NZ_CP009283.1\|WP_039871080.1\|1763660_1764476_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	7.13079e-79
NZ_CP009283.1\|WP_039871092.1\|1772082_1773360_-\|glycoside-hydrolase-family-27-protein	gnl\|CDD\|269893	cd14792, GH27, glycosyl hydrolase family 27 (GH27). GH27 enzymes occur in eukaryotes, prokaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-N-acetylgalactosaminidase, and 3-alpha-isomalto-dextranase. All GH27 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. GH27 members are retaining enzymes that cleave their substrates via an acid/base-catalyzed, double-displacement mechanism involving a covalent glycosyl-enzyme intermediate. Two aspartic acid residues have been identified as the catalytic nucleophile and the acid/base, respectively.	4.71047e-106
NZ_CP009283.1\|WP_052421222.1\|1766695_1768633_+\|DUF393-domain-containing-protein	gnl\|CDD\|214802	smart00752, HTTM, Horizontally Transferred TransMembrane Domain. Sequence analysis of vitamin K dependent gamma-carboxylases (VKGC) revealed the presence of a novel domain, HTTM (Horizontally Transferred TransMembrane) in its N-terminus. In contrast to most known domains, HTTM contains four transmembrane regions. Its occurrence in eukaryotes, bacteria and archaea is more likely caused by horizontal gene transfer than by early invention. The conservation of VKGC catalytic sites indicates an enzymatic function also for the other family members.	4.45473e-24
NZ_CP009283.1\|WP_039871111.1\|1789429_1791814_+\|alpha-L-arabinofuranosidase	gnl\|CDD\|226064	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism].	9.33312e-43
NZ_CP009283.1\|WP_039871086.1\|1765361_1766243_-\|hypothetical-protein	gnl\|CDD\|235139	PRK03612, PRK03612, polyamine aminopropyltransferase.	2.33876e-06
NZ_CP009283.1\|WP_039871102.1\|1782511_1783390_-\|EamA-family-transporter-RarD	gnl\|CDD\|225510	COG2962, RarD, Predicted permeases [General function prediction only].	1.25286e-90
NZ_CP009283.1\|WP_039871090.1\|1769703_1772016_+\|glycoside-hydrolase-family-2-protein	gnl\|CDD\|225789	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].	1.88993e-60
NZ_CP009283.1\|WP_039871084.1\|1764492_1765299_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	3.88909e-73
NZ_CP009283.1\|WP_052421224.1\|1787897_1789097_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.40455e-49
NZ_CP009283.1\|WP_039871109.1\|1784431_1786816_+\|glycoside-hydrolase-family-95-protein	gnl\|CDD\|379625	pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family 65, N-terminal domain. This domain represents a domain found to the N-terminus of the glycosyl hydrolase 65 family catalytic domain.	2.3836e-83
NZ_CP009283.1\|WP_039871095.1\|1774487_1777154_-\|cation-translocating-P-type-ATPase	gnl\|CDD\|319781	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp. strain PCC 7942 PacL and Listeria monocytogenes LMCA1. Ca(2+) transport ATPase is a plasma membrane protein which pumps Ca(2+) ion out of the cytoplasm. This prokaryotic subfamily includes the Ca(2+)-ATPase Synechococcus elongatus PacL, Listeria monocytogenes Ca(2+)-ATPase 1 (LMCA1) which has a low Ca(2+) affinity and a high pH optimum (pH about 9) and may remove Ca(2+) from the microorganism in environmental conditions when e.g. stressed by high Ca(2+) and alkaline pH, and the Bacillus subtilis putative P-type Ca(2+)-transport ATPase encoded by the yloB gene, which is expressed during sporulation. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP009283.1\|WP_039871098.1\|1778675_1779557_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.88332e-27

>NZ_CP009283.1|WP_039871095.1|1774487_1777154_-|cation-translocating-P-type-ATPase
MEYYRKSVSDSLQEQQSSAKGLTSAEVQKRLEKDGYNEIKGRDRDPLWKLFLENFKDPMVVVLLIAAAIQIFMGHVMESLIIFLVLILNAVISVIQTRKAESSLAALQQMSAPEAKVLRDGAPRTVPARELVRGDIVILEAGDFVPADGRIIESGSLKINEGMLTGESEAVEKHINTIDQEAPLGDRRNMAFSGSLVVYGRGVFLVTGTALTTEIGKIAELLESAEAKQTPLQRKLESFSKQLGIAILILSVIIFGIQAGRVWLSDTNVDTTEAIFNALMFAVAVAVAAIPEALSSIVTIVLSVGTNKMAKQNAIIRKLPAVEALGSAGVICTDKTGTLTQNKMTVVDYYLPEGKKDQFKLEHHEWSPEARRLLHIAVLCNDSNINEEGKELGDPTEVALIAFSNSLDKNYQEIRDNFPREAELPFDSERKLMSTLHTFGGQKKMITKGGPDVLFSVCSHVLIDEVEVPFTEELRERFFKVNEDFSSRALRVLAYAYKTVPNSTTQITLEDENNLVLVGLTAMIDPPREAVYSAIAESKNAGIRTIMITGDHKTTAQAIGRDIGLMSDTDIAITGQELDALSDAELDSKLEQIGVYARVSPENKIRIVRAWQRKGKITAMTGDGVNDAPALKQADIGVAMGSGTDVAKDAAAMILTDDNFVSIVNAVSVGRTVFDNIKKAIAYLFSGNLGAIIAILFALIFDWINPFTAIQLLFINLANDSLPAIALGMEKAEPNVMSRKPRELNEGIFSGGLMQAIITRGVLIGAAVIVSLYLGLQHSDDMGVAMAFTTLILSRTLQTFAARSNTQTSVEAGFFSNKYVIGAVLVCFAFYGIAVLPGIRQIFSIPDTFGMSHWLTATGLALGAVILMELTKLVRRAFSPKKAEGARA
>NZ_CP009283.1|WP_039871094.1|1773475_1774357_-|AraC-family-transcriptional-regulator
MEMSKGTYGFRFAEDKELKLCVLYAAGSDSITTPAYRWDGLERTDGPLLLFQYTLSGEGVFESGGRTYRVAAGQAFLAEIPGPHRYYYDTEASEPWEFMFLLFRPELILPHWRKFLREAGEVPYLPPDCAPIRLLKLIVADAAAGRISDPLIASSSIYQFMTELARMQVTSLRDKDNWSDNVRRAAEYIEQHYAQMISIDQLSEHVALSKYHLIRRFSASTGLTPGAYLTRVRTEKAMELLRGTSLSIEAIAGQIGYSSGSYFIKAFRSLTGLTPGEFRSGGESLTYRRLFFD
>NZ_CP009283.1|WP_039871092.1|1772082_1773360_-|glycoside-hydrolase-family-27-protein
MTHKLAAPTPPLGWNSWDCYGAAVTEAEIRGNAEYMAEHLKDYGWNYITVDIQWYEPYANSSQYRPFVPLVMDEYSRLMPAENRFPSAADGQGFKPLADYVHSLGLKFGIHIMRGIPRQAAHAGTALLGTTATAREIAHTNSICPWNTDMYGVDASKEGAQEYYDSLFELYAQWGVDLVKVDDIAASRLYDTHQPEIALISKAIERSGRPMVLSLSPGPAPVEYADFFVEHANMWRVTDDFWDLWPLLLDMFDRCRKWQGVPGDGSWPDCDMLPLGHIGIRSVDGGGADRWTRFTRDEQLTMMSLWSIFRSPLIFGGELRDNDEWTLSLLTNREVLRIQQESHGAREALCKGELIVWTAEHNDGTRYAAVFNTGESPLQVELALEEIGLSAAAGTELWSGEAAELAAGTLQTTVPPHGVRLYSFV
>NZ_CP009283.1|WP_039871090.1|1769703_1772016_+|glycoside-hydrolase-family-2-protein
MSRLETKIMDGWEFTLQQPEDGNFAPVKLPHDWAITAPVNTQMKQGEAQGFRDRWGTGWYRKRLTISGIKEGYVYKLHFGGIYENSTVWVNGKEAGGHKYGYTSFELDITDLIHEGDNLIQVKADNTVFPADRWYSGAGIYREVTLLELPQKHLVPYEVQVTTKIEGSTGIVIVKTGTTALVKAVLTDSDADTSYAEESDDQGVIRFEVPSAKLWSPEQPQLYRLELSLLQGDEAVDHYGLNVGIREIKMVPHKGMYINGQLAKVKGLCIHQDAGCLGTAVTAEIWKDRLLAFKKIGCNAIRTSHHIFMAELLDLCDELGLLVYEEPFDKWTGGAYGRYFETEWQRDLEGMVKRDRNHPCIFMWGVGNEVEHQGQASMLKILSMLRGHLLTLDDTRPVSYAMNPHFKVESNVDVSKIEDIQQFVDEADDTEIYDVAERVERIRRIGEIVDVVCCNYQEQWYPEIHEALPDKLILGTETYQFFRGHREQMQNFTADIPWMDVEQHDYVIGGMLWTGIDYLGESMGYPAKGWAGSLFYTNNVRKPLSYLYECYWSDKPMAYLAVMDYSLQDEGTKEHWDTPRYAGHWNFPQFNKTVIPYMIATNCEEVTLELNGKSFHVGKPAAYPGRMITGYLPYQPGTITVKGYIGGEEVSQYVLQTAGPAVRLVFDQELVHLKAEEVSQKLLTVRAVDTEGVPVFRDSSKVTFEVTGPAEIIAVDNSDLSSSEPYDRNWMHLYHGCLSTAIRLTGEKGRIVLSAYSEGMYPAQLVINVV
>NZ_CP009283.1|WP_039871087.1|1768744_1769569_-|AraC-family-transcriptional-regulator
MYRRLLPLITESDKELPYYLVDAGVHWEQEPIVRPDGYLYQWIQCVEGEGELITGGRTFRVKEGTAMLLLKGAPHEYYAVSPSWRVNWIVFDGHQVESFLKRTAGITAPGVYYISKPEIFTARIQSIMDIQQSDYALRSLEWSAQIYSLLIEMVQYASVHPHNSASSLNLKLKPLFDYIEQNAHKPLTLEEMAGVAGITPQHLCTVFKKTTNIRIFQYIHSVRIKNSKELLLRSPNMPVKDVALLSGFEDPNYFCTVFKKHEQLSPNQFRKLYY
>NZ_CP009283.1|WP_052421222.1|1766695_1768633_+|DUF393-domain-containing-protein
MLKRIKERLYDRKEQAFPLAVFRIGFSLVMILELLQMMTLRELIFQKDSLAATVPAFLTALFVLWIIALVLLLIGYLTRPAAIVNYAISVYLLGFVVVNEANNWQVDSLFLTGAFLLMFMPVSACVSIESLMERRRQARVRVRKLPRPQVRFVHTAFLILLIGLFYLDSMLYKLSSDMYLSGLGLWAPASLPFATYYDVSWLINHEWLVRILGYSLLLYEGLYIFLVWFKPLRVWMSVAGILLHAGVLVVFPIPVMSLLVITIHLAIIPESAYRKLYDRWIAAKHKRLAVYYDRLCPLCRQTVGILSALDFRKAIEWKALQDFAAEEKLLADIPEADLLHDIYAVENGTRLHKGVDTYAAVLRSMGWAYPAGLLLGLPPFHGIAARIYGKVAAKRKREGGCTDSTCGIGIVAPPEKAGTPFSGKFWPAGTFLLLWAVSFLIISFATPAYGKYLTGENSSLTATLRDMAAVYKRITYPVLGWTNHGVYTETHYAEYDFQTRLVYVDGDSSVPLPIMDEEGFSRGYKVGRQWDNWAYATVKPDVSYGQASSSMLGYAAFWAKDSGTDLHSGNGHIEIQRKPIEVSMKDFRPGLLRDNMGQPWSRIGEIAASGGSLQLALDGAAGSQEQGTWGEAVDAAVNATAAALQ
>NZ_CP009283.1|WP_039871086.1|1765361_1766243_-|hypothetical-protein
MNEITTGRIEDDNYRILTLLSRFLNNRPDYISREEIAEITGLGVSAEYAFGVLFAAALGLDIADNPADTDLYNHYFSKMLHRLDVREYYDNPYFKNIQIPAATIGGSELKMELYKPYEAFVCNDIITTSAGRMIPQIGFFETEFRFPAVLENNRIWMTITPNEIETMKEAVAGASGNVLTYGLGMGYYAYMASEKAEVRSVTIVDSNEDVIRLFRTHILPQFGNKHKITVIQADAFEYAEQQMPGGQYDFVFTDLWHDVSDGMDMYLRMKEYEQLSPSTQFMYWIEQSILCYL
>NZ_CP009283.1|WP_039871084.1|1764492_1765299_+|phosphonate-ABC-transporter,-permease-protein-PhnE
MNTIEKQLGAAPRRSLYLSTIAVIVGALFIWSLTAVNFNQIEQNSLRIAKNIIYGLTHPDTELLFNVSKQSVLYLLLETVAIAFLGTVVGAVLAVPLAFLAASNIVPKPVSWLTRLVLIVIRTVPALVYGLMLIRVTGPGAFAGVLTVGITSIGMLAKLYVDAIEELDKRVLESMTSVGCSTFEKIRFGIVPQLLSTFLSVMIYRFDMNMREASILGLVGAGGIGAPLIFAMRSYKWDQVGSILIGLVIFILIIEFFSNKIRARLVKG
>NZ_CP009283.1|WP_039871080.1|1763660_1764476_+|phosphonate-ABC-transporter,-permease-protein-PhnE
MYDKLFPPRKIELPSGKIVLQKRSRTPLVVLLLLICTIASAQFTGFSLRLLVTRIHEFFTIIIAMIPPDWQSLSRIWSPLLDTIKMSLLGSIIGAVVALPVAVAASANIVQSKVLIVLSKAVLSLLRTLPTLVSALIATFVFGLGPMAGTVAITLFTISYVGKLLYEQIENVDMGPFEAMESLGMTRLEAFRFAIMPQVLPGYISTSLYCFEGNVRYAAILGYVGAGGIGLLINEGLGWRDYPAVGMIIFVLIVTVYLIERVSEHFRKKLI
>NZ_CP009283.1|WP_039871076.1|1762885_1763668_+|phosphonate-ABC-transporter-ATP-binding-protein
MIQFIDVNKTYNNGTTALSNINLTIGQGEFVAVIGLSGAGKSTLIRCINRIHDISGGQLLVDEVDVSKLRGRHIRRFRRRIGMIFQSFNLVTRTSVMNNVLVSFVPGLPWWRKLTGIFRKEHKILALEALDKVGILDKAFVRVDQLSGGQQQRVALARTLAQNPDIILADEPIASLDPVTARIVMDDFKKINQEMNISVIMNIHHVEIALEYADRIIGIRKGEVVFDGATSGVTQEILQEIYGGKWEAEKAAMEEQPAYV
>NZ_CP009283.1|WP_039871096.1|1777775_1777985_-|hypothetical-protein
MGGVSWLENWVLGFGAEIKGIFASYSAILLAWAEIKGIFASHSVILLAWAEMKGIFALYFAFSPEASAF
>NZ_CP009283.1|WP_039871098.1|1778675_1779557_-|AraC-family-transcriptional-regulator
MTVRRSRFIMSGEEFFGPGIPVYVNRAYENFELHEHSHAFVEITYVSEGSGVHYIDDEAIPVEHGTLFFIPVGRSHVFRPRTTKKDRPLIVYNCLFPLTYMEGLRGAYPQAADICDYFTVEHIPWFSVKDTTGSYHMLFQELYSEFSARPPGYLAVIAALIVRMLTGLYRQQLQSGTSAGARPQWTAVDEAIACIKANYAGGVTLGGLAAAANLSERQFSRLFRQQTGMSFTGYLHNIRMDAACRLLTDPGYSVAGVAAAVGYADLKFFHQLFKRKIGMAPRQYRLSVRADQG
>NZ_CP009283.1|WP_039871101.1|1779766_1782445_+|family-78-glycoside-hydrolase-catalytic-domain
MTQSKVLNLMVNYRKNPVGIDDPNPRLSWQIQAQARGFIQSAYQIQAGCDPAFGAEAGLVWDTGKVNADSSVHIGYEGETLLPRTRYYWRVRIWDSEDNASVWSEAAYWETGQLSEQNWHASWITAASAPGQPVVSSDSCDYFRTAFELPDRAVSARIYATSLGMYRLYINGVPADDTQFNPGWTSYNKRLQYQTYDVTQLLTAGENALGCIVGNGWYKGYLSWDGNKDHYGRQRAVLIQLHATLADGTEQMLISDGSWRTSSGPLLMSELYHGEIYDARLEMDGWASPGFAEHQWQPAVLTEAPPATLVAQENEPSRIIETIKPIAVLNTPAGETVLDMGQNLVGWVRFTVDAGAGTEITLRHAEVLDRDGNFYTGNLRSAKQTVKYICRGGGPETFEPHFTFQGFRYVQVTGVPQEQLLEQFTGCVIHSDLELTGSFRCSDELVNQLQHNILWGQKGNFLDVPTDCPQRDERLGWTGDAQVFIRTAAFNMNVVPFFEKWLRDLAADQEADGRVPHVIPDIPAAGYGSSAWGDAAVICPWTLYQCYGDVRVLEEQYPSMKGWVEYIRAQGDQEFLWNTGHHFGDWLGLDAKENSYIGATPKDLIATAFFAYSTELLVKTAEVTGQPEEAEKYRQLQSNIIRAFREEFVTPNGRVASPTQTAYAVALMFDLLEEKDRPRTAAMLAEHVKENGNHLTTGFVGTPYLCLVLSRFGYTDLAYELVLQKEYPSWLYSVLQGATTIWEHWDGIKQDGSFWSDDMNSYNHYAYGAVGDWLYRIAGGIELIEPGYKKIRIQPQPGTQLSWAEASYSSIYGPVKSAWSRQADGSLELSVEIPANTTAEVIVPDGCQGQITEGGEKLDQVTGVIAVEDNAGGRKLTVGSGSYRFTLNKSAD
>NZ_CP009283.1|WP_039871102.1|1782511_1783390_-|EamA-family-transporter-RarD
MNNGLVNAIIAYIMWGVLPLYWKLFNNVPAGEILSHRVVWSFVFMAILVAIQQRWGDMKRIAANRSQLLSLTASGLLIAANWLIFIWAVNNGHVVETSLGYYLNPLFNVLLAVVFLREKPNRGQWLAIAIAGAAVLIIAINYGRFPWIAISLAASFGLYGLAKKKTRQEASVGLLSETAVVLPIALVYWIYLAASGESTAWTLSWPMFTGLLLSGAVTALPLLFFARAAARLPLTTLGFVQYIGPTIMLILSIFVFKETVSPVLLTGFALIWTALAVYAASSVRAAKLAKAG
>NZ_CP009283.1|WP_039871104.1|1783403_1783961_-|AAA-family-ATPase
MKLIIIFGPQASGKMTIGHALEKTTELKLFHNHMTIELLAPYFGFSAEMWRLVTKFRQDIFEATAGSGLYGMIFTYVWAFDLQNDWDYIDSVCTIIEERGGEVYFVELETALEERLERNKTPHRLEHKPSKRDTARSEQNLLTTMEQHRLNSQEGEITRERYIRINNTNLSADEVARRIKEEFQL
>NZ_CP009283.1|WP_039871107.1|1784098_1784317_+|hypothetical-protein
MLILRILAGLALFMLGLLYLVQSTVTVNIAKPGTAETKKYTKGFPLIMSRIAGIVMMLIGAVIWIFGFPHFW
>NZ_CP009283.1|WP_039871109.1|1784431_1786816_+|glycoside-hydrolase-family-95-protein
MNIQFNTPAVYWTEALPAGNGSLGAMVFGGIEQERIALNEDTLWSGYPREWNNPGAKEVLPQVRALIAEGRHGEADQLCRKMLGPYTQSYLPLGNLNIMMEHGRPVHRGSYSRKLDLASGVITIQYEIGGVQYTREVFASHPDQVIAVRLTASREGALSLRAGLDSQLRYSALPEGDQYTIAGRAPEQVDPNYYKTAEPVQYGDPETAKSLRFHGRLAAVLDGGSLRAGAEGLHISGATSVTLYFSAATSFDPLLRASSPDRNPGEVTARIIGAVSGKSYAALREEHLQDHRSLFDRVKLQLGASTAPAELPTDRRIAEYGSSDPGLVELLFHYGRYLLIASSRPGTQPANLQGIWNQETRAPWSSNYTLNINAEMNYWPAEVCNLAELHEPFLDYIGALAVNGRKTAEINYGARGWVAHHNSDLWAQSGPAGAYGDGDPVWAFWPMGAVWLTQHLWEHYLFSGDEDYLRNKAYPVMKDAALFCLDWLIENEDGAFITSPSTSPEHKFHAGGGLHAVTAAAAMDLSLIAELFDSCIESAGLLQTDEEFAAELRRTKERLQPLRIGQQGRLQEWAADYQEQDVHHRHVSHLVGVYPGRLISEESAPELFRAARTALEIRGDGGTGWSLGWKISLWARFKDGNRAERLITNLLNLVRENETDHNRAAEGGVYANLFDAHPPFQIDGNFAATSGIAEMLLQSHQGFLELLPALPDSWPEGFVKGLRARGGYEVDIDWINGGLSGAAVTASRTQTCSIAARCNIEVTEAGNARVKTAARDGITEFTAEAGKRYIISVI
>NZ_CP009283.1|WP_052421223.1|1786841_1787702_-|AraC-family-transcriptional-regulator
MNNQQLTRMYMENLEVRVTAAGYNQVWSDWRELDYTPDYNKFYLICEGEGWLKIGDTEYTPQPGEWFLMPQGVKQSFSYTSGPRYTKYWCHFTARIGERNLFDLLQTPVMIGTGQDSGAAELFRELLKYHKDDSVTGPLLVKAAMLRLISYYLEQVAVTRSGLRPAAVSEPLQQVISHIQRYYHRNLTIEELAEQAHLQPNYFIRVFKRQFGTSPIQYINKKRLEEAKLLLVTTNLLLAEIGERVGIPDISYLSRTFKAATGFSPTAYRLTFNPEQRFVHAKKPQQ
>NZ_CP009283.1|WP_052421224.1|1787897_1789097_+|HAMP-domain-containing-histidine-kinase
MAYSENELRASLISAVPIILDRHYQSLAGKNTEFALFITMHKEMLDSSFRDILVLMIEAFFMEAEDYVRYLDVQQREGAQQGVFMAELLGKHYDLMLEMSKDLNLTAQNVMFRIIEDQVDDSAGRLLFNERLVECNWARFTGFAQGYLSNKNQEIDSLHEQKIAVMGQMAAGMAHEIRNPLASIKGFAQLVNNRLNEPVIKAAELRTYLDITIKEIDNLNKLVTDFLVLSRKGDIVTNDGEIFNVIEVVHRVINIVNQLILSDNIVLNVNYSTEQLLTLGSASQLEQVFLNILKNSIDSFTIYSGRIDVTITVQAETSQIVLIFADNGVGIPEDKLNRIFDPFFTTKQKGTGIGLSICKQLIETYGGQIQVDSKVHVGTSVKVSLPLVNDPVYMDEAVL
>NZ_CP009283.1|WP_039871111.1|1789429_1791814_+|alpha-L-arabinofuranosidase
MNNQTKLKVYTQKTGAALGDMFGIFFEDLNHAADGGLYAELVQNRSFEFDPIDHPSYHALTAWDKVERGGGRAELTVESESPFHSKNPHYAVIQIIEPGDGVGLSNAGFNTGIPVKKGGNYLFSVYARRTDSFNVPVRVLIEDRNGEVCASAELAVDSADWRKYEAVLTAGCTDNACRLVILTGGQGRLELDLVSLFPEKTYLGRRNGLREDIAVLLADMKPKFMRFPGGCLVHDGSLNPDDRNSMYRWKNTIGELAERPARRNNWQYNQTLGLGYYEYFQFCEDIGAKAIPVLPGGYDPHHKRIVPLDELGPWIQDALDLIEFAIGDASTEWGAIRSSLGHPEPFGLEYIAIGNEEVGEPFFERYPYFHKAIKQQYPDIKVINSSGPFAAGGEYERGWASAREHGSDLVDEHYYQSPEWFLANMDRYDSFKADEPKVFLGEYASWGNTYYNALVEAAFMTRLERNAHAIGLACYAPMLCNVDYVNWKPDMIWFNNHEAFGTPNYYVQKLFMNHHGDRLLEIDAENLPAKPEPVREPVKGSIVLAAEKSAVIYSNITLTNNLTGEQKVIEAPVELNDTEGTVSKEEGLRSFTLGETGWSDYTLRLTARKTGGVRAFLIFYGMQDAKNRLNWELGGWQNQDSTLSAVTDGRGSCLTQSLFTVEKDTDYELELHVSGRLITASVDGAVINTAEDRQPDIQPLYYTASVEDITGDVIVKAVNVLERPLPVTVELQELAAASYLAEVHELSGVSLDAENSFEEPLKVSPSNTTISFEGSSFAYEFPGHSVTVFRIHSN

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Crispr_ID: NZ_CP009283_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009283_7

4354119-4354209

Orphan

Consensus_repeat	Method
CTTCCACGATTTAGCTTCGTACAAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009283_7

>merge|NZ_CP009283|7|4354119-4354209|CRISPRCasFinder
CTTCCACGATTTAGCTTCGTACAAAACTCGCTTCGGAAGCATACGCCTAGTTTTGTAAGCATTGCTTCCACGATTCAGCTTCGTACAAAAC

>NZ_CP009283|7|7|4354119-4354209|CRISPRCasFinder
CTTCCACGATTTAGCTTCGTACAAAAC	TCGCTTCGGAAGCATACGCCTAGTTTTGTAAGCATTG
CTTCCACGATTCAGCTTCGTACAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009283.1\|WP_039874141.1\|4348730_4349795_-\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NZ_CP009283.1\|WP_039874143.1\|4350094_4351384_-\|competence/damage-inducible-protein-A	unknown	unknown	gnl\|CDD\|234789
NZ_CP009283.1\|WP_052421381.1\|4364084_4365095_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372728
NZ_CP009283.1\|WP_039874137.1\|4347841_4348576_-\|RecX-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237619
NZ_CP009283.1\|WP_039874132.1\|4345123_4345918_-\|TIGR00282-family-metallophosphoesterase	unknown	unknown	gnl\|CDD\|379099
NZ_CP009283.1\|WP_039874149.1\|4353117_4354086_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224343
NZ_CP009283.1\|WP_039874151.1\|4355179_4355440_-\|DUF3243-domain-containing-protein	unknown	unknown	gnl\|CDD\|378681
NZ_CP009283.1\|WP_019910496.1\|4344662_4344923_-\|stage-V-sporulation-protein-S	unknown	unknown	gnl\|CDD\|225234
NZ_CP009283.1\|WP_039874146.1\|4352115_4352607_-\|YajQ-family-cyclic-di-GMP-binding-protein	unknown	unknown	gnl\|CDD\|213038
NZ_CP009283.1\|WP_039874155.1\|4356361_4357642_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP009283.1\|WP_039874165.1\|4362984_4363200_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379433
NZ_CP009283.1\|WP_039874150.1\|4354232_4355000_-\|DUF3388-domain-containing-protein	unknown	unknown	gnl\|CDD\|314698
NZ_CP009283.1\|WP_039874153.1\|4355594_4356362_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235506
NZ_CP009283.1\|WP_039874145.1\|4351435_4352023_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|273139
NZ_CP009283.1\|WP_039874128.1\|4343511_4344480_-\|dipeptidase	unknown	unknown	gnl\|CDD\|366534
NZ_CP009283.1\|WP_144027045.1\|4363196_4363934_-\|translocation-enhancing-protein-TepA	unknown	unknown	gnl\|CDD\|223811
NZ_CP009283.1\|WP_039874159.1\|4359096_4359951_-\|spore-cortex-lytic-enzyme	unknown	unknown	gnl\|CDD\|213747
NZ_CP009283.1\|WP_039874135.1\|4345977_4347522_-\|ribonuclease-Y	unknown	unknown	gnl\|CDD\|237177
NZ_CP009283.1\|WP_039874157.1\|4357645_4358923_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP009283.1\|WP_047171161.1\|4360222_4362916_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|224588

Protein	Function_ID	Function_description	E-value
NZ_CP009283.1\|WP_039874141.1\|4348730_4349795_-\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NZ_CP009283.1\|WP_039874143.1\|4350094_4351384_-\|competence/damage-inducible-protein-A	gnl\|CDD\|234789	PRK00549, PRK00549, competence damage-inducible protein A; Provisional.	0
NZ_CP009283.1\|WP_052421381.1\|4364084_4365095_-\|hypothetical-protein	gnl\|CDD\|372728	pfam13791, Sigma_reg_C, Sigma factor regulator C-terminal. This family is the C-terminal domain of a sigma factor regulator, this may represent a sensory domain.	1.84665e-25
NZ_CP009283.1\|WP_039874137.1\|4347841_4348576_-\|RecX-family-transcriptional-regulator	gnl\|CDD\|237619	PRK14135, recX, recombination regulator RecX; Provisional.	1.88589e-38
NZ_CP009283.1\|WP_039874132.1\|4345123_4345918_-\|TIGR00282-family-metallophosphoesterase	gnl\|CDD\|379099	pfam13277, YmdB, YmdB-like protein. This family of putative phosphoesterases contains the B. subtilis protein YmdB.	1.08015e-154
NZ_CP009283.1\|WP_039874149.1\|4353117_4354086_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224343	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown].	1.27292e-32
NZ_CP009283.1\|WP_039874151.1\|4355179_4355440_-\|DUF3243-domain-containing-protein	gnl\|CDD\|378681	pfam11588, DUF3243, Protein of unknown function (DUF3243). This family of proteins with unknown function appears to be restricted to Firmicutes.	1.28526e-38
NZ_CP009283.1\|WP_019910496.1\|4344662_4344923_-\|stage-V-sporulation-protein-S	gnl\|CDD\|225234	COG2359, SpoVS, Stage V sporulation protein SpoVS [Function unknown].	1.33023e-44
NZ_CP009283.1\|WP_039874146.1\|4352115_4352607_-\|YajQ-family-cyclic-di-GMP-binding-protein	gnl\|CDD\|213038	cd11740, YajQ_like, Proteins similar to Escherichia coli YajQ. In Pseudomonas syringae, YajQ functions as a host protein involved in the temporal control of bacteriophage Phi6 gene transcription. It has been shown to bind to the phage's major structural core protein P1, most likely activating transcription by acting indirectly on the RNA polymerase. YajQ may remain bound to the phage particles throughout the infection period. Earlier, YajQ was characterized as a putative nucleic acid-binding protein based on the similarity of its (ferredoxin-like) three-dimensional topology with that of RNP-like RNA-binding domains.	1.0177e-86
NZ_CP009283.1\|WP_039874155.1\|4356361_4357642_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.98288e-93
NZ_CP009283.1\|WP_039874165.1\|4362984_4363200_-\|hypothetical-protein	gnl\|CDD\|379433	pfam14035, YlzJ, YlzJ-like protein. The YlzJ-like protein family includes the B. subtilis YlzJ protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 61 and 72 amino acids in length. There are two completely conserved residues (L and G) that may be functionally important.	6.22774e-21
NZ_CP009283.1\|WP_039874150.1\|4354232_4355000_-\|DUF3388-domain-containing-protein	gnl\|CDD\|314698	pfam11868, DUF3388, Protein of unknown function (DUF3388). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 261 to 275 amino acids in length. This protein is found associated with pfam01842.	2.09936e-105
NZ_CP009283.1\|WP_039874153.1\|4355594_4356362_-\|SDR-family-oxidoreductase	gnl\|CDD\|235506	PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional.	4.26666e-98
NZ_CP009283.1\|WP_039874145.1\|4351435_4352023_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	2.6043e-55
NZ_CP009283.1\|WP_039874128.1\|4343511_4344480_-\|dipeptidase	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	6.22472e-86
NZ_CP009283.1\|WP_144027045.1\|4363196_4363934_-\|translocation-enhancing-protein-TepA	gnl\|CDD\|223811	COG0740, ClpP, Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	6.09719e-37
NZ_CP009283.1\|WP_039874159.1\|4359096_4359951_-\|spore-cortex-lytic-enzyme	gnl\|CDD\|213747	TIGR02869, Spore_cortex-lytic_enzyme, spore cortex-lytic enzyme. Members of this protein family are the spore cortex-lytic enzyme SleB from Bacillus subtilis and other Gram-positive, endospore-forming bacterial species. This protein is stored in an inactive form in the spore and activated during germination. [Cellular processes, Sporulation and germination].	2.17196e-95
NZ_CP009283.1\|WP_039874135.1\|4345977_4347522_-\|ribonuclease-Y	gnl\|CDD\|237177	PRK12704, PRK12704, phosphodiesterase; Provisional.	0
NZ_CP009283.1\|WP_039874157.1\|4357645_4358923_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	5.04972e-50
NZ_CP009283.1\|WP_047171161.1\|4360222_4362916_-\|DNA-translocase-FtsK	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	9.40904e-168

>NZ_CP009283.1|WP_039874149.1|4353117_4354086_-|helix-turn-helix-domain-containing-protein
MSELGRHLKEARLQKGMSLDDVQEVTKIRKKYLEAIEAGDYKVLPGSFYVRAFIKTYAEAVGVNPDELMEEHGNVPAAPVDTTMETVIQKRSRRSETERNAKWLPTVLMWTFPVLIIAVIYWYASSNMGNSDPETVDSSNVTNEQQDPSKIQPSPTAVGGGIVSSAPGAGGDSTATATASPTVAPTATPAPSPTTAPVTVTEDRKSGKTTVFKVSAPSGAAVEVKIAATGTSWLEVYNGENSQGEKLSFGNTSSGDSLSFTLGAAGMYIKSGYSPATTITVNGQEITDGKTSSRLLLELDTSASGGTAGTEGTEGTESNSGE
>NZ_CP009283.1|WP_039874146.1|4352115_4352607_-|YajQ-family-cyclic-di-GMP-binding-protein
MSSESSFDIVSKMDMQELTNAVNQTEKEIDNRFDFKNSKSSLKLEKDALIIASEDEYKLNAVIDILQSKMVKRGITLKNLDFGKIEPAALGTVRQRLGLKQGIDQENAKKINILIRDSKLKVKSQIQGDTIRVTGKSRDDLQQIITILRKADLPLDLQFNNLK
>NZ_CP009283.1|WP_039874145.1|4351435_4352023_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MNLPNRITLARICLIPIMMFFLLVDFKFYPEPIHWGSFQLSVNHLIAAVIFLLAASTDGIDGYIARKYNMVTNLGKLLDPLADKLLVSAVLISLVELGRCDSWIAIVIISREFAVTGLRQVALLEGKVVAASKWGKIKTVTQIVAISLLLLNNFPFQFVSIPLDDIAIWAAAVITIYSGIDYFVKNKELLELHNA
>NZ_CP009283.1|WP_039874143.1|4350094_4351384_-|competence/damage-inducible-protein-A
MKAEIIAVGTELLLGQIVNSNGQFLSVELAAIGVDVYFQTVVGDNMSRIQEAIQIAQGRADIILFTGGIGPTEDDLTKDALAAALGRSLHIDQLAMDHVQRFFDERKIVMTENNRKQAVIIDGTTPLPNETGLAVGLAFAHESKYYIVLPGPPREMKPMFTDKAKPWLLQHALTTEMPIYSKMLKFAGIGESMLEDKLIDLIRNQTDPTIAPYAKEGEVTVRISTKAPSEREAMQKLDLLEEEIKAILPENMYANIDVPLEQLLVDWMADAGLTLSAAESCTGGLLMESITNIPGSASMFKGGIVCYSNEIKKKLLNVPASYLDGPDAVGAVSHEVAEVLAEQVRMLGDTDFGLSVTGVAGPGYSERKPVGLVFVGLAERGRKTEVYELNLKGTRENIRLRSVKALLYRLWRRLEERKVDTPLEGSALQ
>NZ_CP009283.1|WP_039874141.1|4348730_4349795_-|recombinase-RecA
MSDRRAALDMALRQIEKQFGKGSIMKLGESNHMKVEVVPSGSLALDIALGIGGLPKGRIIEVYGPESSGKTTVALHAIAEVQRVGGQAAFIDAEHALDPKYANALGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSNTIAIFINQLREKIGVMFGNPETTPGGRALKFYSSVRLDVRRVESIKMGNDVVGNRTKIKVVKNKVAPPFKQADVDIMYGEGISKEGSLVDIGTEMDIVNKSGAWYSYEGERLGQGRENSKQFLKEHPEIALVIENKIREASNLTTIVAAPTEAEAAAEKEEEDNLLLEIE
>NZ_CP009283.1|WP_039874137.1|4347841_4348576_-|RecX-family-transcriptional-regulator
MVIQLNPEPEEQDVQVLAGFPDGELLEITKVERQKKADHRYIIHFGAYNMTVHEDVMIKYRMISGSSFMKADLEEIVVADERQRGYIEGLKYLGHKPRTAQEMARRLREKEIGETIIAEVLERLQQERLIDDPLYAKQWAEQRINNQRKGKLWIRQELREKGIDKSLISEALEHISPEEEMESALQTGRKKWNMIRGDVNDKRRKTGAFLMRRGFSGEMVRQVLNTLREEEHAEGGDEEFYDYE
>NZ_CP009283.1|WP_039874135.1|4345977_4347522_-|ribonuclease-Y
MPTTAIWVIIVLVVAALFFGFGYFIRKSLAEAKIQSAEKEAVVIVENAKKDAEALKKETVLEAKDEVHRIRTEAEKETRERRNEIQRQERRLLQKEESLDKKMESLERKEEQVANKEKRIDETQQQIDVIYKKQVTELERISNLSIDDARSIILSNVEQEVRHETAQMIKEIEQQAKEEADKKAREIITLAIQRCAADHVAETTVSVVTLPNEEMKGRIIGREGRNIRALETLTGIDLIIDDTPEAVILSGFDPIRREVARTALEKLVADGRIHPARIEEMVDKSRKEVDERIREYGEQATFEVGVHGLHPDLIKILGRLKFRTSYGQNVLKHSMEVAYLTGLMAGELGEDIVLAKRAGLLHDIGKALDHEVEGSHVEIGVELAKKYKEHPVVINSIASHHGDCEATSVIAMLVGAADALSAARPGARRETLETYIKRLEKLEEISESFEGVEKSYAIQAGREVRVMVQPEKIDDAESFRLARDITKMIESELDYPGHIKVTVIRETRAVEYAK
>NZ_CP009283.1|WP_039874132.1|4345123_4345918_-|TIGR00282-family-metallophosphoesterase
MKVLFIGDIVGNTGRKALREMLPTLKSKYQPHIIIVNGENAAAGRGITSAIANEFFNWGVHGITLGNHTWDNKDIFEFIDDEPRMIRPANFPPGTPGRGYTVVKGNGKQLAIVNLQGRTFLPAIDDPFRIGEEIVEELRRNHKCILVDFHAEATSEKIAMGYFMDGMASIVVGTHTHVQSNDDVILPGGTAYLTDAGMVGSREGILGMEKDAVLYKFTTQLPSRFVVDEGKWQLNGLFAEIDEATGKATRLEKIRLREDEWVMS
>NZ_CP009283.1|WP_019910496.1|4344662_4344923_-|stage-V-sporulation-protein-S
MDVLKVSAKSNPNSVAGALAGVLRERGSAELQAIGAGALNQAVKAVAIARGFVAPSGVDLICIPAFTDIVIDGEDRTAIKLIVEPR
>NZ_CP009283.1|WP_039874128.1|4343511_4344480_-|dipeptidase
MKTANGLKVADFHCDALSKLQAAPDINFKNDSRMDVTAERLAAGNVGLQVFAIYLSEARGKPGFDSVLGQLELFRKRIIGGDGGLRWLRWKEEAVLPAAAEPPLGMLSLEGAEGLEGNLFYAELLFELGVRFLGITWNVANWAADGVLESRNGGFTEKGRALIEWCNTGGMLLDVSHLAPAGFWELTERSTRPFIASHSNAAAVCGHPRNLSDEQIKALIAMDGRIGLTFVPWFVRTGGGAKAEDVLKHIEHICALGGSGQLMFGSDFDGIDAWVEGLEHPGKYTAFAELLLKHYPEDQVRGWLHGNAMSFLSAYLPSRPMP
>NZ_CP009283.1|WP_039874150.1|4354232_4355000_-|DUF3388-domain-containing-protein
MEYKQWYMEYKIHKNRPGLLGDIASMLGMLEVNILTINGVEGKTRGMLLETSDDEKIMLMGEMLKKVDNITVTALRSPRLVDKLAVRHGRYIDRDSDDRKTFRFTRDELGLLVDFLGELFKREGNQVIGLRGMPRVGKTESIIAGSVCAQKRWTFVSSTLLRQTVRSQLAEDEMSLNNVFIIDGIVSTIRSNEKHYNLLQQVMSMPSTKVIEHPDIFVRESEYSFDDFDIIIELRNNPAEEILYESFTTSYSDDL
>NZ_CP009283.1|WP_039874151.1|4355179_4355440_-|DUF3243-domain-containing-protein
MSTESVVKNFDTWKSFLGERVIQAEKMGMSEETITKLAFEIGEFLDKKVDPGNYSNRAIKELWDVGTDDEKHTIAALMVKLAKKNA
>NZ_CP009283.1|WP_039874153.1|4355594_4356362_-|SDR-family-oxidoreductase
MALTGESSKPIKEMTVLITGGSGGIGGAIAERFASVGMNIVIHYMHSHEAANDVARRCLALGAKVLTVAADMKDRGQLLRMAERLESSGMLPDILVNNAGKAHYGMLADVTEEEWDDVMSVNLKGTFLCSQIFMPYMVSQRYGRIINVSSVWGISGASCEVAYSASKGGVNAFTKALAKELAPSGVTVNAVAPGAVNTAMLNNLQEEELRLLEEEIPAGRLASPEEVASLVYFLALPESGYITGQVISPNGGWIT
>NZ_CP009283.1|WP_039874155.1|4356361_4357642_-|insulinase-family-protein
MEQIHYDKLQETLYYEVLDNGLKVYVLPKPAFKKTYATFATRYGSVDNHFKVAGGEETTVPDGIAHFLEHKMFEEPEGDIFATFASNGASANAFTSFDQTVYLFSATENIETNLSTLVDFVQRPYFTDENVEKEKGIIGQEINMYADNPDWRVYFGLIEAMYSKHPVHIDIAGTVESIATITKETLYTCYNSFYHPSNMLLFVVGGVEPEKVFELVRNNQAAKSYDKQGEITRIFEEEPAQVAQKHKESRLAVSMPKCLFGFKEKPEGLTGEAAVRRDLTTKLMLDLLLGSSTALYQKLYDEELISDSFGHEFNSSPQYAFSAIGGDTKDPDLLLKRIKEEINAVLASGFAEKDFERARKKKIGGYLRMLNSPESIAHEFTRYQFRGADLFEVLPVYESITLEDVNARLRAHVDWEQLSVSLVVSP
>NZ_CP009283.1|WP_039874157.1|4357645_4358923_-|insulinase-family-protein
MTNNGFQHGNAAGMRIHVLPTKAFKTFAISLYAGVPLDESTVTATALAPFVLRRGTATYPETTQFRERLEELYGAGFGFDIYKRGDYQIVQFRMDTINDSFVQSKESLLGESFAFLGEVLTRPLLEDGSFRASYVATERETVRKKLEAIVNDKIRYAAERCIEEMCRQEPYRLHPLGQRADLDGITPKSLYESYTAWLDGAILDLYVVGDTTPEEVEKLVIRHFGRSHKQVESYTSNFKPVTVSEVRTVEEKLDVNQGKLNMGLRTSITYSDDRYASALMYNGILGGYPHSKLFVNVREKESLAYYASSRYDGHKGIGTIQSGIENQNYGKAVDIIRKQLDELKAGNISDLELNQTKAMIRNLLSEIQDSAFELISFDFNRQLSGKDRSAQELLAQVDSTGAEDVKAAAGTFQLDTIYFLTGKGE
>NZ_CP009283.1|WP_039874159.1|4359096_4359951_-|spore-cortex-lytic-enzyme
MKKQKQWILALMTLALAAAPFAGLFFKDQEAYANPQTEAVSPVSGEEEALPAFGTTPLKVGSSGQDVYELQGRLKHLGYYGGKIDSQFGAKTKNAVTWFQWKFGMKADGIVGAKTKLKLYNATKAWKPTEPSTTTAKKNTGNTTAKTGNAAKKNSGAELSSGNTMGLSENDLKIMANAVYGEARGEPFEGQVAVAAVILNRVKSPSFPNTPSGVIFQPGAFTAVADGQIYLEPNEQARKAVQQALNGWDPSGGCLYYFNPKTATSKWIWTRPQVMTIGEHIFCM
>NZ_CP009283.1|WP_047171161.1|4360222_4362916_-|DNA-translocase-FtsK
MLPGVAGVAKRRKRKSKKKATIGSVLKYEIYGIMLITISVIALSGEAAVGRSLSSMAGYLLGRFYFVLPLVGIIYGLMVMINRKWPSGWNSRYTGAVLLVLSLCLMSSISAMQQKLGPVNMLHPGNVLAQIHNDLSGALKPGASDSSVYLLGKDISGGYLGALVFAGLLWLFGTLGAKLIMIVMLAISFMLVTNLSYVELFSLLRVRSVKLLESLRQRAANRPAAVPVAPRQSRAGRAAAAAPPDIEEDEDEEDEPSLPRRSQPLFFRRIGGWLSGASNAPDHTEGSEQSLQADGGAVSSASPVLPVISGLEADITRAVSDDPSAYEPSEEEVEPVTPIIRDFFEHIRSEGLSEEEREEWGGFSPAARSAGTRSPAGSSGQAAVEPSGTSDIPDEEVTVELDGLLGTAEGGEPVPAPPLLPPPKPYKLPPFRLLSKPNGGGKAGDQNDYMQTARKLEATLESFGVRAKVLEVVRGPAVTRYEIQPDIGVKVSRIVNLTDDIALALAAKDIRMEAPIPGKSAIGIEVPNPEVSVVTMREVMETQIFQDAESRLSIAFGRDISGQTIIGNLAKMPHLLVAGATGSGKSVCINGIITSILYKAKPDEVKFLMVDPKMVELNVYNGIPHLLAPVVTDPKRASLALKKIVVEMEKRYELFSKSGTRNVEGYNNLMKDNPAAILPYIVVIVDELADLMMVAANDVEDAICRLAQMARAAGIHLIIATQRPSVDVITGLIKANIPSRIAFGVSSNVDSRTILDMPGAEKLLGRGDMLFLPMGASKPVRVQGAFMSDQEVETIVQFVSSQGEAEYDETLVPEVDDMVSEDQEPQDELYEQAVQIVLEAKQASVSLLQRRMRVGYTRAARLIDAMEARSVIGPYEGSKPREVLMSLEQYQQNRISS
>NZ_CP009283.1|WP_039874165.1|4362984_4363200_-|hypothetical-protein
MTFYTVVPLEQMFEGAYSNGQQLQEVTVGGMLMQVEPLEGRQARIIRLLQCPLDKYLDPAFAPGAVVDYDK
>NZ_CP009283.1|WP_144027045.1|4363196_4363934_-|translocation-enhancing-protein-TepA
MQPEETKPAVPEAVPPAVNMIKELGQTAVPSAEPDIFCMTIIGQIEGHFVLPPHNKTTKYEHIIPQLVAAEQNKNIKGLLIILNTVGGDVEAGLAIAEMIASLSKPTVTVVIGGGHSIGVPIAVASTYSIIAESATMTIHPIRMNGLVIGVPQTFEYMERMQERMVRFVTSHSRISEQMFKDLMFKTGELNRDIGTAVGGYDAVKFGLMDEVGGIGAALAHLNRMIAGSSIQTAAGELVQGGLPQ
>NZ_CP009283.1|WP_052421381.1|4364084_4365095_-|hypothetical-protein
MTAPWNEEEDKQLAQVLKKAKRKSMVRSIIISLAVVLVTLTAIFFGAAQMVNHRSSETLMSEWRYRMIASPNEYESGYKDTRGFLSGVLETNTYKIIEGVPIPWKQEWINYNEWWFPFTTGAYGGTSPLTVSNSELEQAGYEYGRQYNPYNGQREMLYYIPEVDYNGKIFNDLSLLSEMEPGKLAEMSLSFDKAYSFAEVQDMLPAGVAQVWYWVDTYGERKGFHFEPRDDGDGGTSYPLPMAGYGVYGFGNSRDGYKVTPQDFVDNVRYGLAGKDIYYEEYKEIHQNLKKDKAEPDATDVRILGVVVTGTASGLSSLQGKNYIRGAVLGAVADRY

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Crispr_ID: NZ_CP009283_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009283_8

4724958-4725049

Orphan

Consensus_repeat	Method
TTCAGTGAGGTTAAGCTCACAAAACTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009283_8

>merge|NZ_CP009283|8|4724958-4725049|CRISPRCasFinder
TTCAGTGAGGTTAAGCTCACAAAACTTAGGTCTATGCTTACGAAGTGAGTTTTGTACGCAGATCATTCAGTGAGGTTAAGCTCACAAAACTT

>NZ_CP009283|8|8|4724958-4725049|CRISPRCasFinder
TTCAGTGAGGTTAAGCTCACAAAACTT	AGGTCTATGCTTACGAAGTGAGTTTTGTACGCAGATCA
TTCAGTGAGGTTAAGCTCACAAAACTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009283.1\|WP_039874834.1\|4720824_4721736_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP009283.1\|WP_039874827.1\|4716095_4717688_-\|AMIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|119407
NZ_CP009283.1\|WP_039874822.1\|4713726_4714383_-\|GerMN-domain-containing-protein	unknown	unknown	gnl\|CDD\|378464
NZ_CP009283.1\|WP_039874836.1\|4721885_4722083_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039874859.1\|4731457_4732960_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273520
NZ_CP009283.1\|WP_039874850.1\|4727929_4729225_-\|asparagine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235176
NZ_CP009283.1\|WP_039874839.1\|4723707_4724955_+\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NZ_CP009283.1\|WP_039874852.1\|4729246_4730455_-\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NZ_CP009283.1\|WP_039874840.1\|4725065_4725941_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NZ_CP009283.1\|WP_052421402.1\|4720177_4720741_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235571
NZ_CP009283.1\|WP_039874861.1\|4732952_4733495_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379491
NZ_CP009283.1\|WP_039874844.1\|4726356_4726872_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039874866.1\|4734537_4735839_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|238623
NZ_CP009283.1\|WP_039874864.1\|4733953_4734472_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227656
NZ_CP009283.1\|WP_039874847.1\|4727175_4727907_-\|DnaD-domain-protein	unknown	unknown	gnl\|CDD\|226445
NZ_CP009283.1\|WP_039874855.1\|4730451_4731324_-\|3-hydroxybutyryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|180269
NZ_CP009283.1\|WP_039874830.1\|4717877_4718483_-\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NZ_CP009283.1\|WP_039874825.1\|4714490_4715933_-\|AMIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|119407
NZ_CP009283.1\|WP_039874832.1\|4718516_4719941_-\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
NZ_CP009283.1\|WP_039874837.1\|4722521_4723625_+\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460

Protein	Function_ID	Function_description	E-value
NZ_CP009283.1\|WP_039874834.1\|4720824_4721736_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.67837e-59
NZ_CP009283.1\|WP_039874827.1\|4716095_4717688_-\|AMIN-domain-containing-protein	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	9.37173e-62
NZ_CP009283.1\|WP_039874822.1\|4713726_4714383_-\|GerMN-domain-containing-protein	gnl\|CDD\|378464	pfam10646, Germane, Sporulation and spore germination. The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. The domain is found in a number of different bacterial species both alone and in association with other domains such as Amidase_3 pfam01520, Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.	2.37042e-12
NZ_CP009283.1\|WP_039874859.1\|4731457_4732960_-\|AAA-family-ATPase	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	9.84445e-146
NZ_CP009283.1\|WP_039874850.1\|4727929_4729225_-\|asparagine--tRNA-ligase	gnl\|CDD\|235176	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.	0
NZ_CP009283.1\|WP_039874839.1\|4723707_4724955_+\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NZ_CP009283.1\|WP_039874852.1\|4729246_4730455_-\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NZ_CP009283.1\|WP_039874840.1\|4725065_4725941_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	6.73192e-90
NZ_CP009283.1\|WP_052421402.1\|4720177_4720741_+\|hypothetical-protein	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0.00312095
NZ_CP009283.1\|WP_039874861.1\|4732952_4733495_-\|hypothetical-protein	gnl\|CDD\|379491	pfam14155, DUF4307, Domain of unknown function (DUF4307). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 132 and 153 amino acids in length. There is a single completely conserved residue C that may be functionally important.	0.00576519
NZ_CP009283.1\|WP_039874855.1\|4730451_4731324_-\|3-hydroxybutyryl-CoA-dehydrogenase	gnl\|CDD\|180269	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated.	4.29568e-110
NZ_CP009283.1\|WP_039874866.1\|4734537_4735839_-\|amidohydrolase	gnl\|CDD\|238623	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.	0
NZ_CP009283.1\|WP_039874864.1\|4733953_4734472_-\|hypothetical-protein	gnl\|CDD\|227656	COG5353, COG5353, Uncharacterized protein conserved in bacteria [Function unknown].	1.49823e-13
NZ_CP009283.1\|WP_039874847.1\|4727175_4727907_-\|DnaD-domain-protein	gnl\|CDD\|226445	COG3935, DnaD, Putative primosome component and related proteins [DNA replication, recombination, and repair].	5.65801e-38
NZ_CP009283.1\|WP_039874830.1\|4717877_4718483_-\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	4.85623e-129
NZ_CP009283.1\|WP_039874825.1\|4714490_4715933_-\|AMIN-domain-containing-protein	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	1.20343e-76
NZ_CP009283.1\|WP_039874832.1\|4718516_4719941_-\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NZ_CP009283.1\|WP_039874837.1\|4722521_4723625_+\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	0

>NZ_CP009283.1|WP_039874839.1|4723707_4724955_+|glutamate-5-semialdehyde-dehydrogenase
MSEVVNKASRAKETTGVLAGLTTGQKNEALLVMADALRQEAQSIIAANAEDLERGRQAGTPESMLDRLALDISRIDAIAEGLQQIAVLPDPVGDTLETFERPNGLSIEKIRVPLGVIGIIYEARPNVTVDAAGLCLKTGNAVVLRGGSSALSSNRRIVEVLHTALAKTSLPPGALQLIEDPNRSSVDEMLKLNGLLDVIIPRGGSSLIQNVVMNATVPVIETGAGICHTYLDAGCQPEMAERISLNAKAQRPSVCNSMETLLIHREYAAEHLPALAEAFRKAKVELRGCQETLALVPWAVPVTAADYATEYNDYILNIRIVSGLDEALGHIAEYSTKHSECIVTENAEHAVRFMQEVDAAAVYHNASTRFTDGFEFGFGAEIGISTQKLHARGPMGLPALTSCKYKIYGTGQIRG
>NZ_CP009283.1|WP_039874837.1|4722521_4723625_+|glutamate-5-kinase
MATRIVVKIGSSSLTGPEGGLNREAVAFFAAELAALRQAGCEVLLVTSGAVAAGFRGIGYIARPKLLHEKQAAAAVGQVMLMQAYQEAFAQHGLPTAQILLTRTDFCSRRAMNNAMMTVEELLRQGAIPIFNENDTVSVDELKFGDNDTLSALVANLLKASHLLLLTDMDGLYSGDPRKTPDAIRFSRVQEITPEIYAYAGGAGSSVGTGGMRSKIDAAKIATRGGVPVFIGRASEPGDLALAAAGDGRGTYFDTTLSSLPVKKQWLGFMSTPLGSLYVDDGAVEALLHGGHSLLPVGVRRIEGSFHSGDVVEVLGPDATLLGRGIVNYDDTQLRSIQGLPSREIVPKLGEVHRLEVIHRDEWITLR
>NZ_CP009283.1|WP_039874836.1|4721885_4722083_-|hypothetical-protein
MSKDNKSAQEQSENAKEAAEFQNQAIRDFVEERAADVRTKGPVDESTARMPDNQNRMITQHNRQM
>NZ_CP009283.1|WP_039874834.1|4720824_4721736_+|LysR-family-transcriptional-regulator
MELRQLQYALQIAAERNFSRAAEKLHVAQPSLSQQLSKLEKELGVMLFQRNTSSVELTHAGERFVEQAEVILGAVELLRQEMSDISQLRTGRVVVGSMPITGAHLLPHVLPVFKQNYAEVEISLLEDSSMNLEKLTASGQTDLSLLSLPLEIPTLAYEVLGEERIDLAVPPDHPLALRKKEGIRTSLEELKDEPFIVLKEGQGFRKMTMELCRKAGFEPRVVFQSNNMETIQSLVATGMGVTLVPHFIARAPRSEFVPVYLPLAEPVPSRTLVIAYRRGRYLSKAAEVFIETFKNTVAGLAEA
>NZ_CP009283.1|WP_052421402.1|4720177_4720741_+|hypothetical-protein
MKKPFYKSWLFWVAVVVLGSIIGQIAARNQPDGQADPAATQQAQQTAPAGTSAAEPAAGNPSVSWESAIKQIAQSDTEPAQKADAVEVLAKSYSPSPEELTDFESQVVEEYNAGNYLAHIEDAEYMLTNLFKAVVVEGKHTDGEPIKEFAFDFYQNTKNTYRGADAVDGDSVKANEAQMDKALAEMK
>NZ_CP009283.1|WP_039874832.1|4718516_4719941_-|3-isopropylmalate-dehydratase-large-subunit
MSNKTMFEKIWDNHVIHSEEGKPSIIYIDLHLVHEVTSPQAFEGLRLSGRKVRRPELTFATMDHNVPTKDRFNIKDPISKQQIDTLSQNCRDFGVRLFDLNDIDQGVVHVMGPEIGLTHPGKTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQCLQQSKAKTMEVRFTGSRNPGVTAKDMILGVIAKYGTDFATGYVIEYTGEAIRELSMEERMTVCNMSIEGGARAGLIAPDDTTFEYLRGREYVPQGEAFDSAVAAWRALVSDEGAQYDTVVEFDVETLIPQVTWGTSPGMGTDISSSVPNPADFTTENERKAAEKALEYMDLAPGTPMSEIGIDYVFIGSCTNGRIEDLRAAAQVAKGHKVSDKVTAIVVPGSGRVKMQAEKEGLDKVFTEAGFEWREAGCSMCLAMNPDVLQPGQRCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAIKGRFTDVRDWNYKTEAVNA
>NZ_CP009283.1|WP_039874830.1|4717877_4718483_-|3-isopropylmalate-dehydratase-small-subunit
MEAFKKINGIVAPVDRVNVDTDAIIPKQFLKRIERTGFGQFLFYEWRFDEEGNDNPAFEMNKPRYEGASVLISRANFGCGSSREHAPWAIMDYGFRVVIAPSYADIFYNNCFKNGILPIKLSEAQVDELFNRTAEHEGYKLNVDLEANTLSDDYGLSISFELDEHRRQFLLQGLDDIGLTLKHADEIAAYEERHAAKLFAR
>NZ_CP009283.1|WP_039874827.1|4716095_4717688_-|AMIN-domain-containing-protein
MRKAGQRVLLLLLLPLLLLSFAGREAAAAGSGAGRIIMDNQELSLPQGIRLENVNGSVMIPIRVVVENLGFEVLWEQTTKKVTVQQDGKTVQLAVGSKTAEADGVTLMLNAAPKQNGGTVLVPIRFVSEQFGLKVGWDNSDKTVYLSGGQAGGTMPSADPLPAATPSPQPVATATPQPAAVPSATPVQTAVTGQDDDIAAGPASTPIPGSAGNVAVTPQVLGAVFSENRLIVAAAGGAKPAVSRLSSPDRIIVDFAGASFASDFVGSLPGVAPNGTPQGKLEVTGYPLVTEVRYALFSTSPSTVRFVIQTVGNQPYQLSTDESTGLVTIDLNAVNNGSAPAAGTGGSGKPVVVLDAGHGGKQPGAVSPNGKLEKDVNFAVAGKVGALLAQDGKVEVVYTRTTDLTLGLADRVKIAEAAKANLFISIHGNSLDVTYPNRDKINGSETYYSRTESLPLAQVLHKHLVAGTGFKDNGVRSKSLHVTRETSMPAVLLEIGYLTNPGNEAAMFTETLQNNLANELVAGIYEYLGL
>NZ_CP009283.1|WP_039874825.1|4714490_4715933_-|AMIN-domain-containing-protein
MKKFAFTLLLMLFVLVLPEHGQAAAANNKIFLDGKELTAGQSAPVENVGGSVMVPLRMISENLGYKVDWDQPSKTVTIAQQLTTVKLVVDQTAASVDDKTVILTNAPINRNGTTLVPIRFISEQFGLTVSWDNTQKIVTLITPETGGSNTGSGSGSADGGSTVVVPPAEPAKDLTMVNGISFNENRLTIAMEGNAVPKVSKVSGPDRIVIDLENATFSDLFGSGQVLDPNLNGSLAVTGYPDVTAVRYSLYSTSPYTVRFVIDTTSSKNYSVEVSGDTSRLVVVDLNAVTTDNPSTQPGNNGRKLVVLDAGHGAKDSGAVGVTGKYEKNFNLAIVLKTAELLKKENNVDVVLTRSDDTFLELKDRAAIANNLNADLFISVHANSSSSSAASGTETYYQRESSKALANVMQKYLVQSTGLSNRGVRYGNFHVIRETKMPAVLLEAGYLSNKGDESVLFKDDVQNKIAEGIVSGIKEYLGLK
>NZ_CP009283.1|WP_039874822.1|4713726_4714383_-|GerMN-domain-containing-protein
MNKKLMYTAVSAVLLMVIAGCGDKPTAAPPAAEAAPSSTAAVSGAEGTPGNGADGAEEAVTPSAAPQADPSPTPSATAEPAKPQEQSQSIEVYFTDPQQLDLTPAAVTISFGNETEKYTESFKALQTSSKAEQVTLWGGIELKSLEFKDGQITLDIHKPDEAQLGAGGEAMAISSLAKTFFQFTEVSSIELLVDGEQVESLMGHVDLEHPITRENSGL
>NZ_CP009283.1|WP_039874840.1|4725065_4725941_+|pyrroline-5-carboxylate-reductase
MCQQPSAPLIKERIVFYGAGSMAEAIVRGMIARSVIASDSITMLNRSSSERLAELRSRYGVQASNDPQQKTEILKQAQVIVLAMKPKDAAEALRGLAPLLSPGQIIVSVIAGITIRTIQGLLGTQQPVVRTMPNTSSTIGLGATGIAFSKEVDEAGRRLGLNIFESVGITSVIEEERMEILTGISGSGPAYIYYMMEAMTAAGIRGGLTPEQSSELTVQSVLGAARMVQQTGEDPAALRKKVTSPNGSTQAAIEALEKGDFFETVISAVNRCAERSREMGAAVEKELFKNQ
>NZ_CP009283.1|WP_039874844.1|4726356_4726872_-|hypothetical-protein
MRIKGIAITLAAVAVVLGITAIVAVIMGDSEDGAGQAAVNSAVEQTEPIRNPATTPPAESNIATGEIDTTDGQNLSVRLSAGMGTNFAVMNKKQGDVLVMKVESDEGNKLEIGILSVSSDEVYSEVIPGGTGEITITVPEDGDYRVYIKNHAAQEAHFRLILDEALTGPLV
>NZ_CP009283.1|WP_039874847.1|4727175_4727907_-|DnaD-domain-protein
MDGKGWNTWGEGAAFGLQHGMAVIPYALLKYYRKLNLSGEEAMLLIHLLSFRQVEGIEFPSLEDLQTVTGRSISAIAGELQKLMKEGFISIDGTNDELRDFHYEQYNFTGLFNKLGVVLAEAAQEAASGKPAGTNHSGYAGSRIGVNSAGAAAVESESRNLFSIFEKEFGRPLSPMECETISGWVDQDRYPEELILLALKESVFAGKVHFRYIDRILLEWSRNRVKNAQDVKNYNQKFRGGGR
>NZ_CP009283.1|WP_039874850.1|4727929_4729225_-|asparagine--tRNA-ligase
MANKSVIKNVNEHVGESVVIGCWVNNKRSSGKIQFLQLRDGTGYIQGVVVKSEVPEQVWEDAKSLTQESSLYVTGIIREEPRSQSGYEMTVTGIEVLHLTENYPITPKEHGVDFLMDHRHLWLRSSKQRAVLVIRAEIIRAIQQFFNENDFTKVDPPILTPTSAEGTTNLFHTKYFDEDAYLTQSGQLYMEAAAMALGKVYSFGPTFRAEKSKTRRHLIEFWMIEPEMAFTDHEESLVVQENFISFIVQSVLTNCRAELEAVGRDISKLENIKAPFPRITYDDAIKFLNDNGHEIAWGDDFGAPHETAIAEANDKPVFITHYPASFKAFYMKPHPERPEVVLCADMIAPEGYGEIIGGSQRIDDPALLEQRFKEHNLSMDTYKWYMDLRTYGSVPHSGFGLGLERTVAWICGLDHVRETIPFPRTLYRLYP
>NZ_CP009283.1|WP_039874852.1|4729246_4730455_-|acetate-kinase
MNVLVINSGSSSLKYQLYNMTDESVLAKGLVERIGMDSSILTHKPTGKQEVTEVSEILEHNTAIRKVLACLTDSEHGVISSIEEINAVGHRVVHGGEYFKESSLVSGDAKSKIRQLFDLAPLHNPAAVMGITATEINMPGVPQAVIFDTAFHQTMPEKAYMYAIPRVLYNKYKVRRYGAHGTSHDFVSKAAAEYLDRPLEDLKIITCHIGNGASVTAVQGGVSVDTSMGMTPLEGLMMGTRSGDLDPAIVPYVMNKEELSVGEVNSMLNKHSGLLAISGVSSDMRDIIDGAEKGEANSTLAFEMYEYRLRKYIGSYAAAMNGVDIIVFTAGVGENASLLRERVLNNLTFLGIELDAEANKVRSGDPRRISTADSKVQVLVVPTNEELVIARDTYRLVQGING
>NZ_CP009283.1|WP_039874855.1|4730451_4731324_-|3-hydroxybutyryl-CoA-dehydrogenase
MKFKKIGVIGGGTMGQGIAEMLAAKGLDVLLVEKNAERLDYSYEMIETNLDKQLEKWAITQAEKKLILSRIQKVTHFAELSSCDMVIETITEDLEDKQKVFNQLDQVCPSHIILASNTSTLSLTELASSTMYPERVIGMHFIHPVGKVDLVEIVRGLKTSDSTFEDTKTFVDEIVEKKGVMIYESPGFVTSRLICLFINEAMHVLQEGVASPEDIDDAMRIGYQFQHGPLEMADRFGLDSVLAALENMFREYGELKYRPSTILRKMVRAGQLGAKSGEGFFKYDKDGDRI
>NZ_CP009283.1|WP_039874859.1|4731457_4732960_-|AAA-family-ATPase
MPKYWKEILAGFAPVLLIFMAFVGINIFPVIIAAGMVAALLVIAHLRGGLTVNAGADKKRKKNGPAKLTFEEIGGQDNAKQELREALDFLIRHEEISKFGIRPLKGILLTGPPGTGKTLMAKAAAHYTNSVFVAASGSEFVEMYVGVGAGRIRDLFKDARTRAVKENKQSAIIFIDEIDVIGGKREGGQQREYDQTLNQLLTEMDGIYNNDTPRILLVAATNRKEMLDSALLRPGRFDRHIQVDMPDKKGRKSILDLHAKNKPLHAAVDLDKIAEEAYGFSGAQLESVMNEAAIYMMRENLTEVEQRHLSSAIDKVMMGEKTDRETNQEEKRRVAIHELGHAIMAELLRPGSVSQVTLTPRGQALGYVRHNPQTEQYLYTKDYLEDQIMIALGGAASEEMFYGGRSTGSRGDFDQALNIVETMMKSGLTSLGIANLQMVTTEELMKENSKILDELMLRTRELLENQRSIFEYSLDILMKEEVLSGEQFRCQFSDSVKLPA
>NZ_CP009283.1|WP_039874861.1|4732952_4733495_-|hypothetical-protein
MKLRLMPVLLTSLLSAALLFGGWYAYRQFAVQEPLQKIVSSYEGVNESHISINRNEVTLKLELEPGTKLRELVQFVNTEGKSAMGGRTLKLDVDQNSSDLLDAYWEKAMFSVAEAMESRKYTLIPAKLDGLRTQNTEYKDVTATTEIDDNNVYVSLSDGKQSKFIILPRVPGSMGVWNNA
>NZ_CP009283.1|WP_039874864.1|4733953_4734472_-|hypothetical-protein
MRKRKKWLPLAVSAVLLLLFGLGQFYAYIMKDQWAERSAAKEVARARAGLTEVTKAQKSVWDENSSYWVLTGTNEAGTKLMVWVRFTLDGKPAGGDNDIYAAELASGTSEQQMQDKLAAELPGANIRRLLPGVFNGEYAWQVFYKQDGRYYYRFYRFADATAIGEGYSLPSK
>NZ_CP009283.1|WP_039874866.1|4734537_4735839_-|amidohydrolase
MNSNKTIIEGGRFLVPGSIQPVLSGYMMIEDDLITYIGEDKPAAGEGVLTVDGSRLLFMPGLVNTHGHAAMSLLRGYGDDMVLQSWLQEKMWPMEAKFTGDDVYWGTALSVLEMLKGGTTTFLDMYDHMDRVAEVTEQSGIRGVLMRGAIGLCPEDVQNQKLAEAVEFARNWHGKADGRITAMLSPHAPYTCPPDFFMKFVQAAHDLDLPMHTHMSETRHEVEQNVADYGLRPVAHLEKLGMFTRPSLIAHGVHLNDEEIEILAKYNVGVSHNPGSNLKLASGVARVPELLKAGVKVSLGTDGAASNNNLDMFEEMRLAALIHKGVSGDPTAVPAPEALLMATEYGAASIYLNNVGRLAAGMKADFIAIDIDQPHLLPHSDLLSHAVYSASAKDVEHVWVNGKQVVKHGQCLTLDEEEIRRKAQETFESLLKR

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Crispr_ID: NZ_CP009283_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009283_9

5071316-5071391

Orphan

Consensus_repeat	Method
ATTAACGGGAAATGTACCGTTCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009283_9

>merge|NZ_CP009283|9|5071316-5071391|CRISPRCasFinder
ATTAACGGGAAATGTACCGTTCTTTTCGGCACCGGCGGCCAATCCGCCTGCATTAACGGGAAATGTACCGTTATTT

>NZ_CP009283|9|9|5071316-5071391|CRISPRCasFinder
ATTAACGGGAAATGTACCGTTCTTT	TCGGCACCGGCGGCCAATCCGCCTGC
ATTAACGGGAAATGTACCGTTATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009283.1\|WP_039875393.1\|5082682_5084413_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|225814
NZ_CP009283.1\|WP_039875387.1\|5075156_5076779_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP009283.1\|WP_039879124.1\|5061050_5062817_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP009283.1\|WP_039875366.1\|5059073_5059586_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP009283.1\|WP_039875382.1\|5072530_5074468_+\|NAD(+)-synthase	unknown	unknown	gnl\|CDD\|235057
NZ_CP009283.1\|WP_039875375.1\|5062879_5063833_-\|pectin-methylesterase	unknown	unknown	gnl\|CDD\|227022
NZ_CP009283.1\|WP_081957451.1\|5060167_5060449_-\|DUF3139-domain-containing-protein	unknown	unknown	gnl\|CDD\|371476
NZ_CP009283.1\|WP_039875377.1\|5064023_5065019_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP009283.1\|WP_039875378.1\|5066886_5068374_+\|altronate-dehydratase	unknown	unknown	gnl\|CDD\|377287
NZ_CP009283.1\|WP_039875389.1\|5078862_5080539_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270298
NZ_CP009283.1\|WP_039875384.1\|5074698_5075133_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP009283.1\|WP_039879130.1\|5081479_5082364_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226666
NZ_CP009283.1\|WP_039875379.1\|5068411_5069812_+\|glucuronate-isomerase	unknown	unknown	gnl\|CDD\|376859
NZ_CP009283.1\|WP_047171196.1\|5065168_5066581_+\|tagaturonate-reductase	unknown	unknown	gnl\|CDD\|235147
NZ_CP009283.1\|WP_039875391.1\|5080594_5081464_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP009283.1\|WP_039875374.1\|5060666_5060885_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_081957452.1\|5084327_5085758_+\|response-regulator	unknown	unknown	gnl\|CDD\|381091
NZ_CP009283.1\|WP_039875380.1\|5071459_5072302_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_CP009283.1\|WP_144027146.1\|5076850_5078866_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367090
NZ_CP009283.1\|WP_039875369.1\|5059598_5060129_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009283.1\|WP_039875393.1\|5082682_5084413_+\|HAMP-domain-containing-protein	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	4.53804e-34
NZ_CP009283.1\|WP_039875387.1\|5075156_5076779_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.42788e-59
NZ_CP009283.1\|WP_039879124.1\|5061050_5062817_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	7.37488e-133
NZ_CP009283.1\|WP_039875366.1\|5059073_5059586_-\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	1.37777e-46
NZ_CP009283.1\|WP_039875382.1\|5072530_5074468_+\|NAD(+)-synthase	gnl\|CDD\|235057	PRK02628, nadE, NAD synthetase; Reviewed.	0
NZ_CP009283.1\|WP_039875375.1\|5062879_5063833_-\|pectin-methylesterase	gnl\|CDD\|227022	COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism].	9.35998e-54
NZ_CP009283.1\|WP_081957451.1\|5060167_5060449_-\|DUF3139-domain-containing-protein	gnl\|CDD\|371476	pfam11337, DUF3139, Protein of unknown function (DUF3139). This family of proteins with unknown function appears to be restricted to Firmicutes.	6.57669e-08
NZ_CP009283.1\|WP_039875377.1\|5064023_5065019_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	4.4865e-109
NZ_CP009283.1\|WP_039875378.1\|5066886_5068374_+\|altronate-dehydratase	gnl\|CDD\|377287	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus. Family members include the C termini of D-galactarate dehydratase (EC:4.2.1.42) which is thought to catalyze the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, and altronate hydrolase (altronic acid hydratase, EC:4.2.1.7), which catalyzes D-altronate = 2-keto-2-deoxygluconate + H2O. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core.	0
NZ_CP009283.1\|WP_039875389.1\|5078862_5080539_-\|hypothetical-protein	gnl\|CDD\|270298	cd13580, PBP2_AlgQ_like_1, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold. This subgroup includes uncharacterized periplasmic-binding proteins that are closely related to high molecular weight (HMW) alginate bining proteins (AlgQ1 and AlgQ2) found in gram-negative soil bacteria. The HMW alginate uptake system is composed of a novel pit formed on the cell surface and a pit-dependent ATP-binding cassette (ABC) transporter in the inner membrane. The transportation of HMW alginate from the pit to the ABC transporter is mediated by periplasmic HMW alginate-binding proteins (AlgQ1 and AlgQ2). Alginate is an anionic polysaccharide that is made up of alpha-L-mannuronate and its 5'-epimer, alpha-L-guluronate. Alginate is present in the cell walls of brown seaweeds, where it forms a viscous gum by binding water. Alginate is also produced by two bacteria genera Pseudomonas and Azotobacter. AlgQ1 and AlgQ2 belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. However, unlike other bacterial periplasmic-binding proteins that deliver small solutes to ABC transporters, AlgQ1/2 can bind a macromolecule and may have specificity for either sugar or a certain type of polysaccharide.	6.58825e-103
NZ_CP009283.1\|WP_039875384.1\|5074698_5075133_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	8.97365e-22
NZ_CP009283.1\|WP_039879130.1\|5081479_5082364_-\|sugar-ABC-transporter-permease	gnl\|CDD\|226666	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].	1.89967e-121
NZ_CP009283.1\|WP_039875379.1\|5068411_5069812_+\|glucuronate-isomerase	gnl\|CDD\|376859	pfam02614, UxaC, Glucuronate isomerase. This is a family of Glucuronate isomerases also known as D-glucuronate isomerase, uronic isomerase, uronate isomerase, or uronic acid isomerase, EC:5.3.1.12. This enzyme catalyzes the reactions: D-glucuronate <=> D-fructuronate and D-galacturonate <=> D-tagaturonate. It is not however clear where the experimental evidence for this functional assignment came from and thus this family has no literature reference.	0
NZ_CP009283.1\|WP_047171196.1\|5065168_5066581_+\|tagaturonate-reductase	gnl\|CDD\|235147	PRK03643, PRK03643, tagaturonate reductase.	0
NZ_CP009283.1\|WP_039875391.1\|5080594_5081464_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	2.57547e-63
NZ_CP009283.1\|WP_081957452.1\|5084327_5085758_+\|response-regulator	gnl\|CDD\|381091	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators. This family is composed of uncharacterized response regulators that contain a REC domain and a AraC family helix-turn-helix (HTH) DNA-binding output domain, including Bacillus subtilis uncharacterized transcriptional regulatory protein YesN and Staphylococcus aureus uncharacterized response regulatory protein SAR0214. YesN is a member of the two-component regulatory system YesM/YesN and SAR0214 is a member of the probable two-component regulatory system SAR0215/SAR0214. Also included in this family is the AlgR-like group of LytTR/AlgR family response, which includes Pseudomonas aeruginosa positive alginate biosynthesis regulatory protein AlgR and Bacillus subtilis sensory transduction protein LytT, among others. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	5.54194e-51
NZ_CP009283.1\|WP_039875380.1\|5071459_5072302_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	1.56607e-25
NZ_CP009283.1\|WP_144027146.1\|5076850_5078866_-\|hypothetical-protein	gnl\|CDD\|367090	pfam02449, Glyco_hydro_42, Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.	9.65065e-06

>NZ_CP009283.1|WP_039875379.1|5068411_5069812_+|glucuronate-isomerase
MFLNDDFLLTTEPARQLFHQYAAKMPIIDYHCHLDPREIYEDQPFKNLTAAWLYGDHYKWRLMRANGIPESHITGDASDYDKFLAWARTLPKAVGNPLYSWTHLELRRFFGVNEPLNEQTAPAIWEQVNRKLAEPEFTRRGLIRSSQVKTICTTDDPADSLEYHKLLKEAEKEFSVFPTFRPDKALNIDAPGFPAWIAALEKAAGLPVTSYAELLEALKNRVEFFHDNGCRLSDHALDVLRYRAGSDAEAQAVFAKRLDGAELSAEEITLYRTELLTKLIGFYHDKDWTMQLHIHAYRNNNTPMFQKLGPDTGYDGINDLSITESLSSLLDRAECASGLPKTILYSLNAKDYPALLALMGCYQKDTAGKMQLGSGWWYNDTRNGMREQLTLLADNSLLGNFVGMLTDSRSFLSYTRHEYFRRVLCGLLGELVERGEAPDDTALLGQLVQDISYNNAAGYFGFPAAE
>NZ_CP009283.1|WP_039875378.1|5066886_5068374_+|altronate-dehydratase
MKRLMKMNPRDTVAVALRPVTAGEQLEIDGVSVQAGQDIPQGHKIALTAFNENDVITKYGYPIGHAIAPIAAGDWIHTHNIKTNLVGEEEYDYVPELHPVTYPKRDLTFQGYRRANGKVGIRNDLFIIPTVGCVNGIAEQMLSEFKAEHPDLGGFDNLTVLKHPYGCSQLGDDHRMTRSILLDAVNHPNAGGVLVFGLGCENNIVSEFRSILGDYDKSRVKFLVAQEVGNEVEAGLALLEELYDAAKDDKREPVPLSELNIGLKCGGSDGFSGITANPLLGAFSDFIISQGGTSVLTEVPEMFGAEKMLMARAESREVYEDIVSLINNFKQYFLSYGEPVYENPSPGNKAGGISTLEDKSLGCTQKAGTSPVVDVLDYGVKLRKKGLSLLQAPGNDLVAASALAASDCQLVLFTTGRGTPFGSFVPTVKVATNNELFAKKGHWMDFNAGPLLEVPMAEVLEEFISYIIAVASGQKTRNEQNEVRELAIFKTGVTL
>NZ_CP009283.1|WP_047171196.1|5065168_5066581_+|tagaturonate-reductase
MTNRLSRTTQPGLPVYPERMIQFGEGNFMRAFVDWQLQQMNNQGLFNGSAVLVQPIGQGLGGLMAEQDNLYTVLLNGIMQEQTVNSREIITSVSRVISPYDDYAAYLALAEDDALEFITSNTTEAGIAYSAGDSLNDTPPKSFPAKLTALLHKRFELGKKGFIIIPCELIDRNGEKLLQIVQQYAAEWQLGEDFNKWLVEENTFCCSLVDRIVPGYPRDKAAQLEEELGYKDNLIVTAEPFLFWVIEGPAWLSEKLPLAEAGLNVVVTDDMTPYRERKVHLLNGPHTAMVPLAMMAGLETVEDVMNDATFFRFVQELMNDELSPMLDLPAEELSSYSAAVLERFRNPFVRHELASISLNSISKFKSRLLPVLLRYQKERSQLPELTTLAFAALLLSYRGDRVARQDGAEVLEAFDKAWSNPDSFVQTILADESLWGQDLTQVPGLADAVAAKLQELDRTDSRAVLQQAVN
>NZ_CP009283.1|WP_039875377.1|5064023_5065019_+|LacI-family-transcriptional-regulator
MITIKDIARVAGVSHTTVSRALNGSPLIKKVTRDKIERIAAEMNYVPNYNAKSLVTKRSFTIGLFFSSIDQGTSSSFLVDAIKGISHALDENYNLTVHGIDGVRNFGNIQPQRFDGILVMSQSDEDNAFIYHVKTIGIPLVVLNRQLEDPGIMNVVANDREGVREAIDYVVSLGHQKLAIIEGKPGFKSSTERKQGFMDSLIAHRLPLHSDYFVQGDYSIESGFAAMSRLLSLPEPPSAVFCSNDDMAIGAMNACYAHKVSVPQQISLLGFDDIMFARYTNPALTTVRKPIADISELGTKMLIQLLLQPDTMPQQLFVKTSLVVRDTVTDL
>NZ_CP009283.1|WP_039875375.1|5062879_5063833_-|pectin-methylesterase
MWVGKEAFCDYPTIQEAVNELERRTVQEHETIYIMAGIYEETVRIYRSDLTIAGVGEVIITNNLYARQLDERGEEQGTFATPTLFLNGNRLVIENLTVINTAGQGPEIGQALALYAHCDETVFRNCIFKGHQDTIFTGPLPAANKHGFAFGGVPLHERQEQCRQLYTRCYIEGTVDFIFGGATAYFEHCEIRSLRSTHDGVGYVTAASTPEGQAYGYVFRDCLLTAGADVSGIYLGRPWRSYAATAFVNCRLGAHIHPAGWDNWGNPANEATVRYSEYTASGASELRGQRVAWANVSGTGEGIPDKARVFAGTEFWS
>NZ_CP009283.1|WP_039879124.1|5061050_5062817_-|ABC-transporter-ATP-binding-protein
MPDYEELFMSRELKRDRPFRTLLLLYRGMRLNLLISLLFYIFKHSPVWVIPIVTADIINQLSRPELTSLGFLWRDLAIVSVVILQNIPSAYIHVSFMSRSSRQVEAGLRGTLIRKLQHLSMAYHTDLRAGRLQSKVLRDVEAIETLSKQMMYSFVPALTNVLIAISITAFKSLQVTLFFVLVIPFGVLLITFFRTRIRTRNREFRSEIENMSGQVAETVEMIPVTRAHGLEESEIGKVEGTLSELKGKGYRLDITEALFGASSWAVFTLFQLLCLGFTCILAYQGKIQIGDVVMYQGFFSTIMASINSLLGVYPQFARGFESIHSISEVLTSTQVEEYQGTSAVTSLRGEYEFRGVEFSYKDTDRHVLKNFNLSVRPGECIALVGESGAGKSTVLNMVVGFYKPTGGIILVDGRPMEELDMRMYRQKLAVVPQSTVLFSGTIRSNITFGLKDVPDNKLQEVIRLANLQDVVAQMPQGLDTLIGEHGGRLSGGQRQRIAIARAMIRDPEIILLDEATSALDNISEFIVQKAMRELRRGRTTFIVAHRLSTIRDADRIVVMKDGQVAEVGTFEELMSRKGAFYELKQLQA
>NZ_CP009283.1|WP_039875374.1|5060666_5060885_+|hypothetical-protein
MPKPLVKNIDFFVAAMSQTFVSALQLDPDGMYSQVGYGIIEKFSEEYVRVKRFDGTVSHYDRGITKFQHNRA
>NZ_CP009283.1|WP_081957451.1|5060167_5060449_-|DUF3139-domain-containing-protein
MYVQVNKIIYAKRVSDYLTGTMGYTKQEIASVKGVWGIVLPKFFAVVEFSDEPGVEYTYFAHNDVLQISYSITPEGRENGFRESRLKHVEPER
>NZ_CP009283.1|WP_039875369.1|5059598_5060129_-|hypothetical-protein
MSDELQQARELFTRYSGSHIQMHREGVLKMYKEHGISRETEQQWLTELADAYLQQLSIRNWEAVQALDGLSRQYQSPVMVEKTAAFAERNIMSADSLVRLMYAEGLTGIIRCHKPVIPRELLFRACRCTVEILEAVMREPLVADPGHELQQLGLRDKRSLNLRAKKGIEEIEELLN
>NZ_CP009283.1|WP_039875366.1|5059073_5059586_-|N-acetyltransferase
MQIRTEKTGDYGQVFRLNELAFGNREDEAELLERIRHSDQFIPDLSIVAERKGMIVGHILLSGAKVVDKELEHPVIVLAPIAVHPEYQGRGIGGLLIEEAKRRAASLGFGAILLIGHPSYYPRFGFVPAGVHGLELLQFPVPAEVFQVCVLREGALEQLKGELMYPAAFF
>NZ_CP009283.1|WP_039875380.1|5071459_5072302_+|sugar-phosphate-isomerase/epimerase
MNVPLHLGIRAHDFPRHSLPELIAKLKHYRFSHIQLAVRKSFPASVPSLSSLSPGAAVYYGESFRQSGIKIAVLGCYVNIIDPDPDKRAQALQDFSTHLRLARDFGASLVGTETGSVGKGYTTDNFTEEAFQEVVASVKIMVAEAERFGVTVGIEAGQNHPLHNVRLTKRLLELIPSNNLQIILDCANLMSPDNYQQQEAVIAEALEMLGDRIAVIHLKDFTVEDGKIVIVPVGQGQLHFAPVLRYMKYKRPHIQGLLESTTEPFIQESVDFLHRLYNEV
>NZ_CP009283.1|WP_039875382.1|5072530_5074468_+|NAD(+)-synthase
MHNFGFARVAAASPELRVADCGFNAEHIIEVIKQAHAQQVEYLVLPELSITGYTCGDLFLQPKLQTEAITALHEITAATAGLSLIVIAGLPVAIKGRLFNCAAVLQQGKILGIVPKTCLPGYSEFYEPRWFAAAEELEVAELRLGGVTVPIGNDLIFASETDGNLSFGVEICEDLWVPVPPSSLLAQAGALLLFNPSASNELVGKADYRRQLVSGQSASCVAAYIYAGSNTGESSTDVVFGGHSLIAENGQTLAESERFSHESQLIIADIDVPRLQYSRSVMGTFRAGKGGRNYREILFADPAARQTERQLARKIAVNPFVPGNPQQRDERCQEILSIQTSGLMKRIRHIGTKQAVIGISGGLDSTLALLVAVRAMERLGRPASDVLAVTMPGFGTTNRTYDNAVGLIKALGASMMVVDIKAACLQHFEDIGHDKDVHDLTYENVQARERTQILMDLANKNDGIVIGTGDLSELALGWCTYNGDHMSMYSVNSGIPKTLIQYVVAWYADHEADETVNKFLYSIIETGISPELLPPSATGEIVQLTENILGPYIVHDFFLYYMLRTGAAPGKMLYLAQQAFGEAYPKEQLKAWLKVFISRFFTQQFKRSCLPDGPKVGTVSLSPRGDWRMPSDASAALWLREVDEL
>NZ_CP009283.1|WP_039875384.1|5074698_5075133_+|MarR-family-transcriptional-regulator
MTDQERDRYFEFPILFKTFLKGLGQQWNKQGFPITQTQFKALQILSKEGPMMVSQLAAALDLTPAAVTGITDQLLTEGYIQKERAAGDRRAMNITLTPEGIAVIRSTQAKLGEVMHSYFSILPEEDMEHLRRIFGVLIKELDKK
>NZ_CP009283.1|WP_039875387.1|5075156_5076779_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MENLTDKRKLSIMIAIMAAMLFAAINQTITSTAMPRIISILDGMDYYTWTINIYLLTSTIATVLVGKLSDMFGRKPFLLAGILLFMVGAFLTGTSDNVYQFITYRGIQGIGAGIIQSTAFTAVGDLFPPRERGKWMGLMTAVFGFSSVLGPTLGGYLIDHLDWHWLFWIFLPLGFVAFGMILALFPKAQRGASTSIDYLGSLFMTTTIVPLLLAFSWAGTEYAWGSAQILGLLAATVVSAIIFIFVETKAKNPILPLHLFKNSIVTISNLIGFLMNFGMMGAMIYLSFFVQGVLGISATYAGYVTMPMSIVMVVASALTGQMIAKKGKYKRFALIGVPIMVAGMAIMVFMNSVPMAVLSMIVFGLGLGLGMPVFSLATQNAVSHTELGAVTASTQLFRNLGGTIGIAVMGTVMSNNLTKHLKEALTSSSAPDFSKLDPTVAQQMTAFANPQALMNKPLLEQTQASLPADVQPIFVQMIDSIRDALGQTLSTVFLTGTIVLCLAFVLVFFLKELPLRSSNKAPADAEAPTEGVNTKKLAVE
>NZ_CP009283.1|WP_144027146.1|5076850_5078866_-|hypothetical-protein
MMASSFQLSGEWFDTGPHAQLTLSPSGGFRLWTSPEGGGAELQPGKADAAEWQACRYVNAEVYHECHDILVLLFSFRDRDDREITYHLGILPGVRTVICLPLEHLSGEKLFLPRYPGVMQTVLRGGARVDRDQITGFSIATIPSAAERSADILGLCLSKEEPAFDYIYQPYVDELGQLKGREWPGKTADAAELVSRLRAERQRATEWAETAGADYSAGSLSRYGGWKELRFTATGYFRTAFDGRNWWFVDPDGYALFSTGMDCVGPSSPMRVTGMEHLLPQLPGQGGAYKDAWSQEGREFSFGIANLIRVFGPQWRDAWTELTEYRLRQGGFNTIGNWSDSRFIAASNLPYVYPLSGFPETEQRIFRDFPDVFSPEYGRNAQQFAEQLLPLREERRMVGYFMRNEPHWAFVDSLDLTQLMLSSATRFASKERFIQWLHEKYSTVDELNAAWNSRYNGYDELYIPDDTKPLADSVRAADYGQFNRLLIRRYVELPARACREAAPNHLNLGMRYAWVSSDEVLEGCEWFDVFSLNCYQFAPDREQIEQISSRLGKPVMIGEYHFGGADSGMLAYGIRAVATQEERGGAYRYFVEQSAAIPQLIGVHYFQWNDQPVLGRFDGENYQIGAADVCNQLYEPFMQGAIEAHKQMYKVRTGTAEPYHVLPAEIPRTGF
>NZ_CP009283.1|WP_039875389.1|5078862_5080539_-|hypothetical-protein
MKKKGALLSVAVLLTGLLAGCGPVKKEGGSTAEATLKDGKYDPPITLTIAKQQDENAGKYINGESLNDNVLTRWGVEKLGIQIETTLLGGDAAQYNTKLRLALTGSEKLPDVLPVYDTSLENDLIQSGLVKDITEDINKYMPERLKEIYKEYPTAFNPVIQDGKVYGMPIAPNLTEGEVMLVRQDWLDNLGLKAPTTIDEFEQVIAAFTNDDPDGNGKQDTYGFDFSGKDSYNTGWVSDSVMIFSAYAGKHLPGQWYNEGGKLTYGSVAGGMKDALAKLRDWYSKGYLNKELATQGAWDALADFTEGKAGIIIGRPWLYGSVKDVETNVQGAKISAYPTISGVSGDKTYQSGQQNDGVFMFNKDFNNMEAFFLYYDKLYDAAFGTGDFKYGYAQGYDYDIVNGEVVFDSKAFNTPLDAVQGVGKMAFTKNTPSVDGPGKSFYDLAQGAKADTGVLMRSAANDPTTIAGYVISYENRDVLLPNAFNGPPTKTMQTSWEQLNTMEKETFTKIIYSKEPLESYDTFVKQWYEKGGTQITEEVNEWYTNAGKVDVMTNMGLK
>NZ_CP009283.1|WP_039875391.1|5080594_5081464_-|carbohydrate-ABC-transporter-permease
MYHKSKGYKIFSFFNYIFLILIALSCFLPMLHLLAQSLSSKSAINGNLVSFWPVDFNMDAYAKTFRNTNFTGSMQISVFRTVLGTLISMFVITTAGYALSKDFRGRNVLMWIFIFTMLFSGGLIPSYILVTKLGFKDTIWSLVLPGAFGAYNLILIMNFFKTIPKALEEAAFIDGASFFVIFRKIYLPLSLPGLATVGLFIMVGHWNAWFDGILYMSSTENYPLASFLQTVVVQGSAQSMALSQSEAAALSEQSIKAAQIFISTLPIILVYPFLQKYFVKGIVLGAVKE
>NZ_CP009283.1|WP_039879130.1|5081479_5082364_-|sugar-ABC-transporter-permease
MKKSWPLYVLCIPALVCVLIFAYGPMVGLVMAFQDYKPWLGISGSAWIGWDNFARIFQYKEATQAITNTLIIAVIKIVVGIVVPIIMAILLSEIRNMGVKKSIQTLVYLPHFLSWVTVAGIMIDLLGLDGGINHVLTSVFGIQPVYFLGDPVLFRPTVIISDLWKNFGFGMIVYLAVITGIDPSYYEAAEIDGASRWQQIRHVTLPSMLPMIIVIATLSLGNILDAGFEQIFNLYNPLVYSTGDIIDTYVYRSSLLNGQYGFGTAVGLFKSGISFVLIVISYRIAYKAANYKIF
>NZ_CP009283.1|WP_039875393.1|5082682_5084413_+|HAMP-domain-containing-protein
MIKKVNMKRFIYFFIFFLLLTLGLFYIMNTLSSRTLQESLVNASRNQLAYAEEIIDGAISEASMYGIQYTADDDVRFYQNRKLELSNYDAQMNKNEISGRLADQLFSSLAVESIGIYWKQDGTFIQTGHDSLAKLPFEQVMERGWQTYNNSLYYFSVYPYIHQPKNPANIEYIVGVKLKKEYLTGLLGKAVNGDSSNAFLLVNDSLVISSKPVDSRIEEKARATVTPDPQHILKFDYHTGEDDYYVLSKYIEPIDTYLVTYTRMSDFLTPLDRSQQVFAASIIVILIIGLTVILMFYRNFYRNVHLLGKKFHQVEQGNYSTRISENPVNEFYTLFKSFNHMVLRTQNLFASLKIETELRRDAEVKQLQAQINPHFLYNSLFFIMSMAQSSPEAVMQMSKHLAEYYRYLTKLDRQDATLASELQLAGHFLSIMSLCKELHYEISLPPELGEHRIMPLIIQPIVENAIQHGIEELQGAHRVSIEVKALDDGALILIADDGKGLTPDQLELLAARVGSEAPPQGSRGIGLWNIHQRLKNAYGELSGLRFFTNDWGGLSVMAYIDFSLDEGGEYEITDCG
>NZ_CP009283.1|WP_081957452.1|5084327_5085758_+|response-regulator
MTGAACPLWLTLISHWMKEENMKLLIVDDGHYIVEYLKHLLDWKKFGVQQVVTSTNSLEAKQLLNHNDVDILITDIRMPEVSGLDLLEHISGQLLKTKVVFLSGYSQFDYAQKAIRLGALDYLLKPVDKEDMEKAMQQVLKNIDEQQRKQQPVQAEFDALGFLLSVIGSAAPAEGDNEFVACDTMQQLKERYCFFQITDAKGTDEVTLRNHSCAAEGFIWAAGPSITGLLRVSGAGPLAAEIENISFSESFEFADKNTVRHIFCRFYYREEPDAGDCTLLQNCTAHPKRENADWEAARKNILRSYAKLQTRKQQLLYLLDFIQLLYFTSGRLQQSEVADWIFKELAEPDAALQSVLLCVTRLERSPKLTNSHIVSTIQAYITGHIGDGLSLDDLGKIVHLHPVYLSKVYKQETGENLSGFIAAKRLEKASQLLLESSLHVVDISQLVGYKKPQYFIKLFKEQYGITPYQYRRQQIQ

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Crispr_ID: NZ_CP009283_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009283_10

5176985-5177083

TypeV

Consensus_repeat	Method
CTTATTGGGTTGAGGTGTGTGTGGAGTGT	CRISPRCasFinder

1 spacers

cas14j

The CRISPR arrays of NZ_CP009283_10

>merge|NZ_CP009283|10|5176985-5177083|CRISPRCasFinder
CTTATTGGGTTGAGGTGTGTGTGGAGTGTGGCGGTAGTGTGTGATAGGCTGCGGTGCGGGATCGGAGTAACTTATTGGGTTGAGGTGTGCGTGGAGTGT

>NZ_CP009283|10|10|5176985-5177083|CRISPRCasFinder
CTTATTGGGTTGAGGTGTGTGTGGAGTGT	GGCGGTAGTGTGTGATAGGCTGCGGTGCGGGATCGGAGTAA
CTTATTGGGTTGAGGTGTGCGTGGAGTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009283.1\|WP_052421428.1\|5178241_5179321_-\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NZ_CP009283.1\|WP_039875534.1\|5174716_5176603_-\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273919
NZ_CP009283.1\|WP_039875541.1\|5180448_5181012_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379534
NZ_CP009283.1\|WP_039875543.1\|5181252_5182746_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP009283.1\|WP_144027187.1\|5161206_5162805_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270302
NZ_CP009283.1\|WP_039875546.1\|5183053_5183815_-\|endospore-coat-associated-protein	unknown	unknown	gnl\|CDD\|373047
NZ_CP009283.1\|WP_039875532.1\|5170940_5173541_-\|glycoside-hydrolase	unknown	unknown	gnl\|CDD\|375009
NZ_CP009283.1\|WP_081957455.1\|5163060_5164149_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14j	-	gnl\|CDD\|223747
NZ_CP009283.1\|WP_039875549.1\|5184024_5184840_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039875531.1\|5169452_5170904_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|182112
NZ_CP009283.1\|WP_039875528.1\|5167950_5168859_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP009283.1\|WP_039875540.1\|5179473_5180442_+\|bile-acid:sodium-symporter-family-protein	unknown	unknown	gnl\|CDD\|223462
NZ_CP009283.1\|WP_039875533.1\|5173662_5174706_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380400
NZ_CP009283.1\|WP_039875537.1\|5177582_5178131_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039875525.1\|5165154_5167281_-\|alpha-glucuronidase	unknown	unknown	gnl\|CDD\|226187
NZ_CP009283.1\|WP_039879157.1\|5164347_5165142_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|376614
NZ_CP009283.1\|WP_039875530.1\|5168855_5169347_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227231
NZ_CP009283.1\|WP_156123836.1\|5188495_5188672_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275319
NZ_CP009283.1\|WP_039875551.1\|5184853_5186176_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133003
NZ_CP009283.1\|WP_039875553.1\|5186198_5188190_-\|Na+/H+-antiporter	unknown	unknown	gnl\|CDD\|223104

Protein	Function_ID	Function_description	E-value
NZ_CP009283.1\|WP_052421428.1\|5178241_5179321_-\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	3.55885e-41
NZ_CP009283.1\|WP_039875534.1\|5174716_5176603_-\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	0
NZ_CP009283.1\|WP_039875541.1\|5180448_5181012_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|379534	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region. This domain is a tetracycline repressor, domain 2, or C-terminus.	1.30106e-13
NZ_CP009283.1\|WP_039875543.1\|5181252_5182746_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	4.86837e-111
NZ_CP009283.1\|WP_144027187.1\|5161206_5162805_-\|extracellular-solute-binding-protein	gnl\|CDD\|270302	cd13584, PBP2_AlgQ1_2, Periplasmic-binding component of alginate-specific ABC uptake system; contains the type 2 periplasmic binding fold. This group represents the periplasmic-binding component of high molecular weight (HMW) alginate uptake system found in gram-negative soil bacteria such as Sphingomonas sp. A1. The HMW alginate uptake system is composed of a novel pit formed on the cell surface and a pit-dependent ATP-binding cassette (ABC) transporter in the inner membrane. The transportation of HMW alginate from the pit to the ABC transporter is mediated by periplasmic HMW alginate-binding proteins (AlgQ1 and AlgQ2). Alginate is an anionic polysaccharide that includes alpha-L-mannuronate and its 5'-epimer, alpha-L-guluronate. Alginate is present in the cell walls of brown seaweeds, where it forms a viscous gum by binding water. Alginate is also produced by two bacteria genera Pseudomonas and Azotobacter. AlgQ1 and AlgQ2 belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. However, unlike other bacterial periplasmic-binding proteins that deliver small solutes to ABC transporters, AlgQ1/2 can bind a macromolecule and may have specificity for either sugar or a certain type of polysaccharide.	5.62013e-150
NZ_CP009283.1\|WP_039875546.1\|5183053_5183815_-\|endospore-coat-associated-protein	gnl\|CDD\|373047	pfam14398, ATPgrasp_YheCD, YheC/D like ATP-grasp. A member of the ATP-grasp fold predicted to be involved in the modification/biosynthesis of spore-wall and capsular proteins.	1.78364e-57
NZ_CP009283.1\|WP_039875532.1\|5170940_5173541_-\|glycoside-hydrolase	gnl\|CDD\|375009	pfam17132, Glyco_hydro_106, alpha-L-rhamnosidase.	0.000165091
NZ_CP009283.1\|WP_081957455.1\|5163060_5164149_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.6292e-53
NZ_CP009283.1\|WP_039875531.1\|5169452_5170904_-\|6-phospho-beta-glucosidase	gnl\|CDD\|182112	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional.	0
NZ_CP009283.1\|WP_039875528.1\|5167950_5168859_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.31324e-23
NZ_CP009283.1\|WP_039875540.1\|5179473_5180442_+\|bile-acid:sodium-symporter-family-protein	gnl\|CDD\|223462	COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only].	4.41388e-54
NZ_CP009283.1\|WP_039875533.1\|5173662_5174706_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380400	cd06996, cupin_Lmo2851-like_N, AraC/XylS family transcriptional regulators similar to Listeria monocytogenes Lmo2851 protein, N-terminal cupin domain. This family contains bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included is Listeria monocytogenes Lmo2851 protein, whose function is unknown. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	7.11716e-31
NZ_CP009283.1\|WP_039875525.1\|5165154_5167281_-\|alpha-glucuronidase	gnl\|CDD\|226187	COG3661, AguA, Alpha-glucuronidase [Carbohydrate transport and metabolism].	0
NZ_CP009283.1\|WP_039879157.1\|5164347_5165142_-\|transcriptional-regulator	gnl\|CDD\|376614	pfam01784, NIF3, NIF3 (NGG1p interacting factor 3). This family contains several NIF3 (NGG1p interacting factor 3) protein homologs. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown.	1.32772e-27
NZ_CP009283.1\|WP_039875530.1\|5168855_5169347_+\|hypothetical-protein	gnl\|CDD\|227231	COG4894, COG4894, Uncharacterized conserved protein [Function unknown].	4.83207e-35
NZ_CP009283.1\|WP_156123836.1\|5188495_5188672_-\|hypothetical-protein	gnl\|CDD\|275319	TIGR04526, predic_Ig_block, putative immunoglobulin-blocking virulence protein. Members of this family are putative virulence proteins of Mycoplasma and Ureaplasma species. Members share a region of sequence similarity (see TIGR04524) with protein M, a Mycoplasma genitalium protein that binds a conserved light chain region of IgG and blocks its protective function of antigen-specific binding. The seed alignment for this model includes an N-terminal signal-anchor domain and a proline-rich linker domain, and a C-terminal extension, in addition to the protein M-like domain recognized by TIGR04524. [Cellular processes, Pathogenesis].	1.05451e-07
NZ_CP009283.1\|WP_039875551.1\|5184853_5186176_+\|hypothetical-protein	gnl\|CDD\|133003	cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.	1.09875e-53
NZ_CP009283.1\|WP_039875553.1\|5186198_5188190_-\|Na+/H+-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	5.51613e-91

>NZ_CP009283.1|WP_039875534.1|5174716_5176603_-|PTS-transporter-subunit-EIIC
MDSQKLAGEIIRNVGGRSNISHLEHCVTRLRFTLKDESAAQTDTINNLDGVMTVVKSGGQYQVVIGNKVKEVYKEVTDQLGGAVVPNDAEAAPSGKKKNAFNRFVDVIVGIISPIIGLLAAAGIIKGMLGLATALDWLAATDGTYILLNALGDGLFYFMPIIVGFSAGRKFGGNPFIPAAIGAALVYPSVITAYNAGDSLTFAGIPIVLASYTSSLFPIILAAWVAAKLEKWFERKLPASLRLFFVPLFTILITGILTFLLVGPVLTEASSLLADATMWIYNLSPVVAGVVLGGLWQLIVIFGLHYAFIPVLINNITTLQYDPVNAILSASVFAQVGAALGVFLKSRNAKVRSIAGPAAISAFMGVTEPAIYGISLPYKKPFAMAGIAGAVGGGITAAMSAKMFGFGGGGIFAAPLFINPAGLDNSFYAYVIASAVAVVIATVLTYLFGFKDKQETPAKAPAASGASNTALAATMGTKTQVYNSIQGTIIPLSEVPDEAFASGAMGSGYAVIPADNKVYAPFDGTVVTVANSKHAVAMVSDDGVELLIHMGINTVKLKGAPFELKVQENDRVQKGQLLAVVDWNMIRDNKFEVTTPVIVTNTADHESVELKADRSREAKTGELVLSIR
>NZ_CP009283.1|WP_039875533.1|5173662_5174706_+|helix-turn-helix-transcriptional-regulator
MQRDELRRRLYELSESEHRHRKDPDKGLLIFEQMNRTVNITGSPVYILDLDPYSTQAWRDSKFPANSTNSFHINQMTIRQHSRYSKIPMHIHNYVEINYVYSGQCKQIIDGKHVTLREGDLCMLDTNVPHTILDTTEDDIIINLIMLKPFFTTGFLSRLATTGIISNFIVNAISQIHNHNRHIIFHTGNETSFKETMESLMCETFDPGFCSKEIIESYMVIVFSKLLQSFQGGQDKDYGDDTGKANLIRILKYLEDHYKDVTLISVAGHFNFHPNYFSSYLRKATGRTFKELVQIQRMTSAGLLLTNTSLTVEEVAGEVGYNNLGFFYKKFVAYYGQTPSDYRKQHR
>NZ_CP009283.1|WP_039875532.1|5170940_5173541_-|glycoside-hydrolase
MKRLTEVLENKQENYVLPFLWLHGEPEALLRESVAKIQESGIHAVCVESRPHPDFCGEGWWRDMDIIMDEARRRDMKVWLLDDSHFPTGYANGKIKSDHPELVKKYLKIHQLDFVGPLQDASFLVKWGSPGNRMSLTAAPVAVKDKILGIIAARRTGENSVDPASFVDVSSHEQDGVLYWDIPEGDWRIFILLETIHGGEPHTEGYLNPLDPEAVKVLINEVYESHYARYAADFGRTFAGFFSDEPRFGNMHGAFGSIGRAEMVLPWKEGLQDRFTGEERLLLPLLSTVEAEGAEHAIRYKYMDIVSRMYGEAFTGTLAAWCREHGVEYIGHLIEDNNAHARLGYGAGHLFRAIWEQDMAGIDVVLNQIMPGMDKGPFKSMTAKGWDGEFFHYGLAKMGASLGHLDPKKRNRTMCEVYGAYGWAEGIKLMKWITDHMLVRGVTHFVPHAFSPKEFPDPDCPPHLDARGHNPQYRFMSVLFDYLNRISHLLNGGRHVANVGLLYHAEAEWLGEYMLFQKPAKELAQHQIEFDVIPADLIAQAELGSGTYTINGQTFSALVIPYAGALPQALLERVKVFTDAGIRVQFIDGLPVRNEHGEQVDGTLLEQAAVCGLEDFTAQLIQEGHHDVHTSEHQPYLRSYHYRQAEGDVYMFFNEDPYKVIETTVTLSGDRPVVAYDGFSNQVKLVSQSQADGKTAVQLVLHPYESVVVLESREKAGAAPALQQANEPAEISGEWNVSFAAATAYPSFSAEQTLVSLQDISRVEGKARFSGTMRYELAFTLEEAASANTVLDLGRVYEVAEVTLNGQQLGVKICPPYIFDAGSALVVGENRLVIEVTNNLGKQEQDFLSQYMIHEPSGLLGPVMLR
>NZ_CP009283.1|WP_039875531.1|5169452_5170904_-|6-phospho-beta-glucosidase
MSKYTFPAGFLWGGAIAANQTEGAYREDGKGLTTVDLIPSGPQRWPVMGGKLDAFEPQPGLMYPSHEAIGFYHSYKEDIALFAEMGFKALRVSVSWARIFPNGNDAEPNEPGLEFYDNLFDELLKYGIQPVVTIAHFDVPVHLVQTYGSWRSRELVGLFERYAITLFTRYKDKVKYWMTFNEINMLLHLPFVGAGLVFGEGEDKRQIQYQAAHHQLVASALAVKACHELIPDAQIGCMLAAGSTYPYVCNPEDVWDAMNKDRESFFFIDVQSRGAYPGYAKRFFRDNGIAVEMEQGDEELLKHNTVDYIGFSYYASRTASTDPEVLGRMTSGNVFGSVDNPYLQKSAWGWTIDPLGFRITANQLYDRYQKPLFVVENGLGAADVPGPGGEVADDYRIDYLQRHIAAMGEAIEDGVEIIGYTSWGPIDLVSASTGEMTKRYGYIYVDKDNAGNGTLQRSRKKSFHWYKQVIASNGGDLSADGLD
>NZ_CP009283.1|WP_039875530.1|5168855_5169347_+|hypothetical-protein
MRQLYMKQKVFSLSGKFTVKNQQEQDVYLVEGSFMQIPKTFSIMNVRREEVALITKKVFSFLPKFFVEVNGREVLTIKKEFSFLKARYTIDSAGIEVRGNWWDMDFQVIQHGSVIGEVNKEWFTWGDSYRIHILNEQMEAIMIAIVVAIDCVKADDAAGAGSQ
>NZ_CP009283.1|WP_039875528.1|5167950_5168859_+|AraC-family-transcriptional-regulator
MASAFLPPELGQNISEIIIPDVKTTLNLFGMHLRTVSGAWSYPIHAHPQYEFNYVLDGEQRVIVNNRSYTQRAGDLVLLRPGDSHSSLSGNGRPFTYFCIHFDIDDKILISLLSRLHHVLFPADSTIAHKLTPSLTRLVDISHQIQGDITMSQRMRLQSAVFDLFAQLWEAFSIEANLYASASYEKVELAHQIRSRLQGLVYQQFKQNTQDDKTLGVDDIAAELGISSSHCYRVFRQVFGLSPREFLSQQMLHEAKVLLDDLRLPVSHISAILGYRDIAHFSRQFKRWYGKSPREYREGGSL
>NZ_CP009283.1|WP_039875525.1|5165154_5167281_-|alpha-glucuronidase
MKEANRISNRTQDHGYNAWLSYPELPQGKLQEQYVRWCGAVSVTETDDTVQAALAEWKRGVASMLGIEVQAEGAMAITAANSPARSAGTSAGPVVAFGTFGGGNTLISSVFAEADIRKIGREGFAIRTSEEHNCIAVGASAPAGLLYGVFHLLRLLGTLQPIDALDEAVNPVNGLRMINHWDNFDGSVERGYAGRSFLYDNNRFIGDMERVRDYARLMSSAGINAIAINNVNVHAQETLFISEYLPQVAEIADQFRVYGIRLFLSVNFAGPMQEGGAGTADPLDPGVRTWWQNKAAEVYKAIPDFGGFVVKADSENRPGPFTYGRDHADGANMLAEALEPFGGIVIWRCFVYNCKQDWRDRKTDRARAAYDHFKPLDGRFKDNVILQIKNGPMDFQVREPVSPLFGALTQTNQIIEFQIAQEYTGQQRHVCYLVPQWKEVLEFQTLAKGEASPVKRIVDGSLWGNRHSGIAAVSNTGNDINWSGHLLAQANLYGYGRLAWNPELSAEAIAAEWIAMTFGSNQEVADVISGILLDSLEIYESYTAPLGVGWMINPEHHYGPNVDGYEYSQWGTYHYADNRGIGVDRTVKTGTGYSAQYIGSNAARYESLEECPDELLLFFHHVPYTHVLHSGKTVIQHIYDTHFEGAQRAEGLLSSWQTLKDKVREDLYVQVEQRLTGQAAHAKEWRDQINTYFYRKSGIEDQLSRTIY
>NZ_CP009283.1|WP_039879157.1|5164347_5165142_-|transcriptional-regulator
MTITFGTVIDWLTAGIPVPEQTVDRLENGAPETEVRGIVTAFTASQYVIEQAAALGANLILSHEGIYYSHHDQHERLSQDPIYLQKSALLARQETGIYRLHDHVHRYTPDGITEGLIAALGWLGYVTEHRPAVSLLTLPPMTAREAAEHVKSKLQIAYVRAAGDLSAACSKIGILVGYRGGGQLAIPLYGEEGLDLIIAGEGPEWETPEYVRDALQQGRSKALIMLGHAESEAPGMKLLAERLAAQFPAVPVHYIPERPVFEVI
>NZ_CP009283.1|WP_081957455.1|5163060_5164149_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MLIHQAYKYRIYPTPEQQQLIRRMFGCCRFVFNTFLDTWNQSYAETGKGLSYHACATKLPVLKAQYDWLKEVDSIALQSVARHVADSFDRFFKKQNQAPRFKSRKHPVQSYTTKFTNGNIAIEGSRLKLPKLGWMRFANSRKLEGRILSATVRQNASGKFFVSLSCEVEKNPLPQVDAHIGIDLGLKEYAVSSNGERYANPRFYRQYEKKLALWQRRMARRTPGGSNWKKAKQHVARIHERIANKRNDFLHQLTTKLIRENQTISIEQLRVANMIQNPKLSKSIADASWGEWVRQLTYKALWYGRTLRIVDMFEPTSQRCHVCGTIHPEVKNLAVREWTCNACGTLHDRDENAAHNIAQVAV
>NZ_CP009283.1|WP_144027187.1|5161206_5162805_-|extracellular-solute-binding-protein
MLIKSWRKGRARHSAVFVLGIVLLAGGCGGSNNESALKIPPGNPSADPADFSYPMTGDITLTFMNEQLGGTPERLPIEDEYEARTGIRIRQLGGTPMTDQKFSLLLASGELPDIFLNTWLQFPGGPDKAVEQGYILKLNDLIGQYAPNLKRTLAEHPEIDKMIKTDAGTYYAFPFIRSENGRVYGGPIIRQDWLDELGLGIPETIGEWHTVLTAFKERKQAAAPLTLRTLFLNERTGGFAGAFGVMGNFYVNDGKVVYGYLEPGYKEYLKTMAQWYKEGLIDKDFASIDAATVDKKMTSGESGATIGWQFYIESYNSAAQAAGKQADFAAAPYPAAAKGKTPEFGQLDNAYAGTYSAAISANTKHVEAAMRWLDYAFTEEGSMLNTFGIEGTTYTLVDGEPEYTDFVANNPDGISSDKVMLKYSHSTNFPMIQQDNHLPVKFAQTTAALDIWKNTNHERHLLPPVTPTGEESDELGSIMNDINTLVKEAELKIILGTEPVDNYDKYVQQMRDMGIERALDIQQAAYERYLKR
>NZ_CP009283.1|WP_039875537.1|5177582_5178131_+|hypothetical-protein
MRRVALLALIIMFFLPAGRSNALSCAELPTVEKAYEYYDGIVIGQVDKVSRSNDDSSNEIHIRVKRSFKTITERSLILKENITWGALNGPSETGKDYLFYLKQTDGEWENPLCSPSALISSDSAGPEYLQNKELTLLPAPQPPADNSPLAEKTPIDAWTIGGLVVIGILTAATIVRYHKKRG
>NZ_CP009283.1|WP_052421428.1|5178241_5179321_-|LCP-family-protein
MEARSKRKKAQRSTTRSRKVLISTAAVLGTCLIAGAVYAGTLYFKAERALDRISASGTAPGETAGPASPAPAATADAQPASAEETNKPLTFLLAGVDNRSGSGGTMNTDVIMPVVYEPATRRLSILSIPRDLKLTSSELGTHKANYYYAYYYAHNKGEDLQKTREFYGSLLQMDIDHMILVNFAAFSSIVDELGGLDIDVPMDMRYVDNADGTNINLKKGMQHLNGKEVLDFVRYRKSNRGTAESSDFSRNERQQEVLNLILDKLDSVSGITKWGEIIDILGDNIRTDIDKDQLVSWILNYKTMKPATSELITLESQWKSPYVYANEEDLLEKLEKLRGPLDLPALDNRQLLHDFGILK
>NZ_CP009283.1|WP_039875540.1|5179473_5180442_+|bile-acid:sodium-symporter-family-protein
MLLKLNRILNRMMPLITPLSVLTGVLCGSALTPYTHLSPWLFAFMTFAGSISLGVKDFVNVLKKPLPLFVCLFILHIAMPLVAFGLGNLLYYTDHFTITGLVLAAVIPTGISSFIWVSIYKGNTALTLSIILIDTLLAPFIVPGVLSVLIGTSVEMDTWAMMSSLFWMIVVPSLLGMVLNEWSKGAVAPVWSPRLNPFSKLFMAVVIMINGSVISPYLANIDLKLVGLATVIVFMASTGYVLCFLTARMLRWNEADEVALIFNGGMRNISAGAVLAVSYFPAPVAVPVVLGMVFQQLLASLAGFILGRRSKVSHPADRTSAA
>NZ_CP009283.1|WP_039875541.1|5180448_5181012_-|TetR-family-transcriptional-regulator
MDNETPRTDPRVLRTRQLLKNALIELLEEMDIEKISVNRIAERAGINRVTFYLHYRDLPDMLERMADEMVEDIYKVVSSHPEQASGEEWPLLESLLKHIEANSRLYKVTLTFRHSTIFTDRLVKLIEDMITSRLARQGGNPESAVQRDIALWYGSAALIGTIVKWLRRDMPYTPAYLARQITLLRSR
>NZ_CP009283.1|WP_039875543.1|5181252_5182746_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MSTVTDNNNPIKKGPILFIMILGAFLATLNQTVMSVAVPGLMKDFGIAASTAQWLTTGYMLVNGVLIPITAFLMQRFTTRELFQTSMFVFLAGTVVSALASSFPVLLTGRMIQAAGAGIIMPLLTNVILALFPREKRGAAMGMVGLAIIFAPAIGPTLAGYILEHYSWETMFYGMIPLTLIVIVCGFIYLRNVSERTYPKIDLISVVLSTAGFGMLLYGFSQAAGSGWSSSEVLLTLGTGIVALALFVWRQLASQNPLLDLRAFKYNMFSLTTLISVAVTIVMYADMMLLPLYLQNARGYTALESGLLLLPGALIMGLLMPVTGKLFDRFGAKWLAVTGLLIMILTTLGFVNLTDSTSFTYLVLMSTGRRIGMALLLMPIQTLGLNQLPSKLNAHGTAISNTTRQVAGAVGTSLLVTVMTSRTTVHMKEMLAAGGAQGGTQEHMIMEASIQGINDAYLVIVGIGILGLLLSFFIKKVGPAAGKQSGQPLKQAVTENV
>NZ_CP009283.1|WP_039875546.1|5183053_5183815_-|endospore-coat-associated-protein
MKAIKADPLQSKWFKTKLLLRSSFIKRYIPDTRRFSKSNLEQMIYSYGMIYVKPERGTYGNGVIRAERGERGGFTYQYEETVRQFDTFEAFHKSLAKKAGRKKYLIQKGIHLLKHNSRRFDIRVMVQVSPKGALEATGIIGRLGHPRKIVTNYHSGGKPMAIETLLQSHLSPHRLAQLTEELNTLGVRMAAHMQKTYPKIHQIGVDVGLDRSLIPWIIEVNMMPDPYIFNQLKNKSMYKKVMRYRRAQLKKTQ
>NZ_CP009283.1|WP_039875549.1|5184024_5184840_+|hypothetical-protein
MSSISANGAVSAPAIDVLIPAIEKDLATLPFVIDSLRRHVRHPISHIYIVSPSSSRIRELCARKNCIFVDEATVLPFSNQDIHYSSARWNRSGWLYQQLLKMNGDRICRESFFLVIDADTVLIRPHRFRSAGKTVFYCRNWSQPEYFRTYKKLLGSAAPSPRSFVTHYMLFERQKLAALKKTIEARHGLPWHAAILRSINKKKQFGFSEYETYANYVYSRSRTSVLLRNANNKSLHSPAASLKDDQIRKLARTYRSLSFHQRKGYSIPARH
>NZ_CP009283.1|WP_039875551.1|5184853_5186176_+|hypothetical-protein
MHHTILLCGGSGQRLWPLSGEIRSKMFLDLLPAPDGGTESMLGRVCRQLTQAGLGGSALFVTHKDQQALVGRYTGSAYPVIGEPYKRGTFTAAALGVLHLYTTGKAKPEDTIGVAPADMFADDDFFQLFHQFAGVLTASGAELALLGTRPAHPSDQYGYIVPGEAASGGYAPVISFEEKPGRTRAEELIGRQALWNCGVFAFRLSFMLSQLAQMGLPAEVDAFTCLYAGLPVRSFDKEIAERCSRAVVLKHEGRWGDLGSWSALSEELQQPVTGQGGIWGESPDSVIINELSLPLHVIGVPGIVAAASPEGILIAGRHEANAIKEILQQNPAQPRYGESGWGSCTILDRTDGVPEQAVTLKLCILPEHELPETSCRHSRKHWLITAGQGEILRNGLSTEAHPGDCFTFKQGERHGIRAHTAIELIEIRMLGEGDEESFYT
>NZ_CP009283.1|WP_039875553.1|5186198_5188190_-|Na+/H+-antiporter
MELFEYILLMLAALAVSNLVNRFIPSVSVPIIQIALGVAITLLPVHFELTLNPELFLLLFIAPLLFNDGRHADKEALWSLRKPILLLALGLVFVTVGIVGYFVNWLLPVIPLAASFALAAALAPTDAVAVGALEQKVKIPHRTMQLLEGESLINDASGLVSFQFAAAAMATGMFSFRSAGLSFLAISLGGVVLGLLLTLMKYGVVKWLRRLGMENVTLHMLIELLTPFLIFLAAEELGVNGILAVVAAGIAHSFNYKKMNPEVAKLRVVSKSTWSVIIFVLNGLVFLLLGTQLPDIIQTIWNSPEIGNVRVILYTLLLTLAVLGLRLIWVLLMKVPGEGGADHSPRKSRFRTALIITLSGVRGTITLASTLSLPFFLDDGTAFPSRDLIIFLASGVILWTLLASNYLLPLLLGAETETAQEEEETQAKIEILQGVITGLNELSTEQNRLASVQIISAYTSRIRMLRKDDRKDEVQRTLGLSVMKWERENTLLALEHKEVDPYTGHRYLNRMNRLLFMHTRDVRYKRELFPVKHWDEMVGLLQQARLSRRQRRAELTRLRIRNVTYVLGQLNALLAEGGPDIEAVSTFKLQYERMLLRLTRGEAYTGSREEYGESMQELARIGIQLERDGLQAMFESGRISRQGMKEMKRDILFMEHDLREETV
>NZ_CP009283.1|WP_156123836.1|5188495_5188672_-|hypothetical-protein
MNMNKDLPPELPPKVVPEVDPERIPEPKPAEIPPEIVPREQPEIPAPVPPEVPPTQPL

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Crispr_ID: NZ_CP009283_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009283_11

5202922-5202998

Orphan

Consensus_repeat	Method
TTTAACTGTATTTCGTGCAACTAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009283_11

>merge|NZ_CP009283|11|5202922-5202998|CRISPRCasFinder
TTTAACTGTATTTCGTGCAACTAAAACTGCCGAAATTCCACTCAGACACACTTTAAGTGTATTTCGTGCAACTAAAA

>NZ_CP009283|11|11|5202922-5202998|CRISPRCasFinder
TTTAACTGTATTTCGTGCAACTAAAA	CTGCCGAAATTCCACTCAGACACAC
TTTAAGTGTATTTCGTGCAACTAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009283.1\|WP_039875566.1\|5198799_5200614_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039875582.1\|5221598_5222768_+\|Ger(x)C-family-spore-germination-protein	unknown	unknown	gnl\|CDD\|274338
NZ_CP009283.1\|WP_039875575.1\|5212198_5213545_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP009283.1\|WP_039875560.1\|5195723_5197613_-\|DUF2264-domain-containing-protein	unknown	unknown	gnl\|CDD\|378358
NZ_CP009283.1\|WP_039875557.1\|5191938_5192670_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_052421430.1\|5194689_5195490_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239819
NZ_CP009283.1\|WP_039875572.1\|5210335_5211175_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP009283.1\|WP_081957457.1\|5201866_5202781_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP009283.1\|WP_081957456.1\|5192693_5193701_-\|S8-family-peptidase	unknown	unknown	gnl\|CDD\|173803
NZ_CP009283.1\|WP_047171203.1\|5215661_5217311_+\|response-regulator	unknown	unknown	gnl\|CDD\|381091
NZ_CP009283.1\|WP_039875558.1\|5193730_5194618_-\|endonuclease-I	unknown	unknown	gnl\|CDD\|225231
NZ_CP009283.1\|WP_039875581.1\|5220072_5221581_+\|spore-germination-protein	unknown	unknown	gnl\|CDD\|377020
NZ_CP009283.1\|WP_039875573.1\|5211193_5212129_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP009283.1\|WP_039879167.1\|5218090_5219797_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_CP009283.1\|WP_039875569.1\|5200659_5201805_-\|DUF2264-domain-containing-protein	unknown	unknown	gnl\|CDD\|378358
NZ_CP009283.1\|WP_039875561.1\|5197624_5198761_-\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|369381
NZ_CP009283.1\|WP_039875580.1\|5217417_5218086_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_081957460.1\|5213901_5215629_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225519
NZ_CP009283.1\|WP_081957458.1\|5203473_5210127_-\|DUF5011-domain-containing-protein	unknown	unknown	gnl\|CDD\|366896
NZ_CP009283.1\|WP_039875555.1\|5191254_5191923_-\|YukJ-family-protein	unknown	unknown	gnl\|CDD\|378365

Protein	Function_ID	Function_description	E-value
NZ_CP009283.1\|WP_081957456.1\|5192693_5193701_-\|S8-family-peptidase	gnl\|CDD\|173803	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	3.35164e-101
NZ_CP009283.1\|WP_039875582.1\|5221598_5222768_+\|Ger(x)C-family-spore-germination-protein	gnl\|CDD\|274338	TIGR02887, Spore_germination_protein_B3, germination protein, Ger(x)C family. Members of this protein family are restricted to endospore-forming members of the Firmicutes lineage of bacteria, including the genera Bacillus, Clostridium, Thermoanaerobacter, Carboxydothermus, etc. Members are nearly all predicted lipoproteins and belong to probable transport operons, some of which have been characterized as crucial to germination in response to alanine. Members typically have been gene symbols gerKC, gerAC, gerYC, etc. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Sporulation and germination].	9.39258e-84
NZ_CP009283.1\|WP_039875575.1\|5212198_5213545_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.44799e-55
NZ_CP009283.1\|WP_039875560.1\|5195723_5197613_-\|DUF2264-domain-containing-protein	gnl\|CDD\|378358	pfam10022, DUF2264, Uncharacterized protein conserved in bacteria (DUF2264). Members of this family of hypothetical bacterial proteins have no known function.	3.18418e-165
NZ_CP009283.1\|WP_052421430.1\|5194689_5195490_-\|hypothetical-protein	gnl\|CDD\|239819	cd04327, ZnMc_MMP_like_3, Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.	6.09808e-87
NZ_CP009283.1\|WP_081957460.1\|5213901_5215629_+\|sensor-histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	1.18731e-49
NZ_CP009283.1\|WP_081957457.1\|5201866_5202781_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.13463e-21
NZ_CP009283.1\|WP_039875572.1\|5210335_5211175_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	7.91042e-90
NZ_CP009283.1\|WP_047171203.1\|5215661_5217311_+\|response-regulator	gnl\|CDD\|381091	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators. This family is composed of uncharacterized response regulators that contain a REC domain and a AraC family helix-turn-helix (HTH) DNA-binding output domain, including Bacillus subtilis uncharacterized transcriptional regulatory protein YesN and Staphylococcus aureus uncharacterized response regulatory protein SAR0214. YesN is a member of the two-component regulatory system YesM/YesN and SAR0214 is a member of the probable two-component regulatory system SAR0215/SAR0214. Also included in this family is the AlgR-like group of LytTR/AlgR family response, which includes Pseudomonas aeruginosa positive alginate biosynthesis regulatory protein AlgR and Bacillus subtilis sensory transduction protein LytT, among others. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	7.57986e-40
NZ_CP009283.1\|WP_039875558.1\|5193730_5194618_-\|endonuclease-I	gnl\|CDD\|225231	COG2356, EndA, Endonuclease I [DNA replication, recombination, and repair].	7.35874e-33
NZ_CP009283.1\|WP_039875581.1\|5220072_5221581_+\|spore-germination-protein	gnl\|CDD\|377020	pfam03323, GerA, Bacillus/Clostridium GerA spore germination protein.	0
NZ_CP009283.1\|WP_039875573.1\|5211193_5212129_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.35272e-91
NZ_CP009283.1\|WP_039879167.1\|5218090_5219797_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	3.79464e-38
NZ_CP009283.1\|WP_039875569.1\|5200659_5201805_-\|DUF2264-domain-containing-protein	gnl\|CDD\|378358	pfam10022, DUF2264, Uncharacterized protein conserved in bacteria (DUF2264). Members of this family of hypothetical bacterial proteins have no known function.	1.05975e-138
NZ_CP009283.1\|WP_039875561.1\|5197624_5198761_-\|glycosyl-hydrolase	gnl\|CDD\|369381	pfam07470, Glyco_hydro_88, Glycosyl Hydrolase Family 88. Unsaturated glucuronyl hydrolase catalyzes the hydrolytic release of unsaturated glucuronic acids from oligosaccharides (EC:3.2.1.-) produced by the reactions of polysaccharide lyases.	5.3059e-10
NZ_CP009283.1\|WP_081957458.1\|5203473_5210127_-\|DUF5011-domain-containing-protein	gnl\|CDD\|366896	pfam02057, Glyco_hydro_59, Glycosyl hydrolase family 59.	6.45052e-96
NZ_CP009283.1\|WP_039875555.1\|5191254_5191923_-\|YukJ-family-protein	gnl\|CDD\|378365	pfam10042, DUF2278, Uncharacterized conserved protein (DUF2278). Members of this family of hypothetical bacterial proteins have no known function.	6.26014e-93

>NZ_CP009283.1|WP_081957457.1|5201866_5202781_+|AraC-family-transcriptional-regulator
MSLRLMRFYCVYCDESEGAAGMKHSEYYQPFQGDILAGIGNSPVSPTRDFHIHDHYEVFLFLGGRVNGFVEQYSYPLQRGDVLIFNNHEIHKIINLTQEPYERLTIHFRAPQIYPFCTATTNLLACFQNRQPGEHNLAHMEEPLLSEYLDLSMRLIDTVEQPKYGSEVLALTYLIQLLVLVNELYTRTRSDVVTSVISPHIQAAMSYIDGHLQLNLTLEQIAGELGLDKYYLSHMFKQQTGGTLYRYILLKKITLAKQLLSAGTSVSDTCYLTGFNDYANFIRTFKNITGIPPGKYGKLAERAD
>NZ_CP009283.1|WP_039875569.1|5200659_5201805_-|DUF2264-domain-containing-protein
MNTTEQRKYWLDTLLQIGHPVLDALSRRRLKEELPTEFHADRSTFAHLEAFARLACGMAPWLELEGLEGEEERLRVRYAGLMLEAIDAGTDPASPDYMNFKTEGQPLVDAAFLAHALVRAPKQLAGRLDGRVKDNVITALKETRRTAPSGSNWILFSAMVEAALFILGDPEYDRMRVGYAVHMFMDWYKGDGVYGDGKDFHWDYYNSFVIQPMLADVVTVFEQDSVQYAALKPVIMERARRYATVLEKMIAPDGTYPFTGRSIVYRFGAFQLLSQAALQHFLEDSLPPQQVRSALTAVIRRTMDFPGNLDEKGWLRPGVYGYQPDLAESYINTGSLYLCASVFLPLGLLPSDPFWAEEDMKWTSARIAAGENVMRDQAIGK
>NZ_CP009283.1|WP_039875566.1|5198799_5200614_-|hypothetical-protein
MTEQSLLKSMQELKPVSVSLYVPDGNPELFWRTAASAGHLQQDIAEIRAEGERLAGQPVPELTPELFSVFARTGSRLEYERVYFERRRRLNTYVFLSLLEPDNAQHLQYAEEMLLAVCSEYTWCLPAHVPGGHETAGINRFIDLFSAETGFTLSEASLLLGERLPLELRLRIRQETEERLFRPFLEQGPYNWETARHNWAAVCAGSIGAAALLSVEDPQVLAEILQKTESSMHCYLEGFGDDGACLEGLGYWNYGFGYFTYYSDLLRSRSAGSLDWFKVPKVQRIARFQQQCFIDGSLTANFSDSLPRVRVHMGLSHYLAGVYPGAVEYPPAELRAPYTEDHCSRFAPALRNLIWKQSGTGHKDWPAASTYLPDAAWLLSRHVSAGGTFGFAAKGGHNNEPHNHNDLGQFILTGRGEVYAADLGSGEYTAGYFGDGRYEYDCNGSQGHSVPVINGRYQQAGREFSAAVLHAATGGAADKLTLDLTAAYEAEGLQSLIRTLVWHKEELPRLELIDKYSYAGVPESWTERFITWRKPEELSPGTVLLPGQESGGVKVTYDPAAVGLQINEHVYRDHFGQDQVWHSLDFQAVRPGSEGSYAFTFQFI
>NZ_CP009283.1|WP_039875561.1|5197624_5198761_-|glycosyl-hydrolase
MNMTAQHTWVEEAWTKALEKTVINSRSIGSEFPHASHGGKYDLAAPHWWTAGFWPGMLWQLYAGGGDESLKAVAVDCEQRLDEVLDGYLKLDHDLGFMWILTSVANFKLTGSEASRTRALKAANYLAARFNLKGRYIRAWNPWREGEDNSGVAIIDCCMNMSLLFWASETTGDPRYRHIAEAHMDTVLEHFIRPDGSVYHIVDFNPHTGEVAEKRGGQGYAPESAWSRGTAWAIYGLALAYHHTGFERYLNAAQQVANFFITRLPEDHVPHWDFRAAGVAGDLRDTSAGSCAASGMLLLAGQVTAAESHVYRNAALKILESLYSNYGSWDNPEEQGLLLHGTGNYPENGNIDVPLIYGDFFYVEALARVKEAGPFYWE
>NZ_CP009283.1|WP_039875560.1|5195723_5197613_-|DUF2264-domain-containing-protein
MNSEQRAAIQDNPLVTRQDLALALEQLTAPLGPLYSPGGARLRAGRTGASYPSAVAEMEGFSRVLWGLVPLLMGGGSSPLLDTVLDGIRHGTDPAHDEYWGDVADYDQRLVEMAVFGFALAAVPEKIWTPLAPKEQKQLYSWLNQINAHPCYDCNWLFFNVLVNAGFKKLKLTYDEGQLETNLQRMDAFYLDEGWYSDGVNGHSDYYVPFAIHYYGLLYAKLMEQEDPERSALFKERARLFAPAFISWFAPDGSALPYGRSLAYRFAQSAFWSAYAYAEVEGDFPAGVVKGLVLRNLRWWFSQEIVDRDGVLTIGYTYPNLVMAENYNAPGSPYWALKTFLPLAFSEEHPFWKAEELPLPELPAVSVQQPAHLVMVREAGHVAAFNSGHLYTNEHTHTSAKYEKFVYSTGFGFSVPRAEWGLSQGAFDSMLALSEGGDNLYRVRRRNLKSEITDNVLHSVWKPWSDVEVRTWIIAGLPWHIRVHRIAAGRALDIAEGGFALGQEAERGQFISPTGAAACTAWGATAIKGLLGYSKVQGKAELIMPNANTNLLRPRTVLPTLTASLEPGVHWLVSAVYGDPAGNPAKDSWSRQAAGILEQQPELTLQAVIEQEAIKVITVDGKALTISMD
>NZ_CP009283.1|WP_052421430.1|5194689_5195490_-|hypothetical-protein
MDKEHKNFCMLRSLPEQLQAEAGRLSVEENPANLADGAQDNPSAVLAVIQSRWKPGRTLRVHFMDGDPIVHANVEKYAREWEDYANIHFEFVHDPKAEIRISFKQSGYWSYLGTESLAISKDEPTMNFEGFNRSTPQSEYSRVVLHEFGHALGCVHEHQNPKADIPWDKPAVYRYYMGEPNCWTRQEIDDNLFYKYDSANTPGTAFDPESIMVYPIPNNQTLGDFEVKGNNKLSRMDKQFIGKMYPGARVSDAEPVSAGVHEAVRS
>NZ_CP009283.1|WP_039875558.1|5193730_5194618_-|endonuclease-I
MGTTIRPDDMVASTASKLQTLEVNLERFRSNEAEYFDKAKDKADVEQYYAQLNRNEQDGKALFNALTDLLTKTHDVKVPYSQSDEYLKTLVDLHDDGYLRSIYSGKEAEPHKVIEEDASMVAVADETSPTGHILNVEHVVPQSWFDEAKPMRGDLHHLFYCEKGCNFFRGNKRYVDFADYNPEEFRTDTERSECGKGIGGDGATDGQFEPEYGKGIVARAMLYFILRYPKAIEAKHIKKLDVNVLLKWHKDFPPNLKYEKHRNQEIYKIQGNRNPFIDLPELADRIDFSMFKPSQ
>NZ_CP009283.1|WP_081957456.1|5192693_5193701_-|S8-family-peptidase
MIALASTSTLISDAVELQPFEAADVSRHIKEIPKGIQMIQAPAFWEKGSYGRGVKIAVLDTGCDKDHPDLKDRIIGGRNFTDDDEGSKDSFKDYNGHGTHVAGTIAATKNDKGVVGVAPEASLLILKVLNREGSGRPEWITEAINYAIVQKVHIINMSLSAGAEHEDMHEAIKRAVDKGIIVVCAAGNTGNKAKRFPAAYNECTSVGAVDFSGNKAIFLTENEEVDLTAPGVNVLSCYPLDLIPDRSEPYKVISGTSMSSPHVAGALALVLSFYQSKEQFNRPLTEDELYAQIVKCTIPLGGPKTAEGNGLLYLTAPELLAEYWKTNKPDLSQYS
>NZ_CP009283.1|WP_039875557.1|5191938_5192670_-|hypothetical-protein
MGDNMSYEFKLFLDHKLMLREDRKPIDQVAGLSFLLKDNMQIHLLDTPELRFYEVGWIVRSRLKDGKRELTYKRRFRDYSSLDSAISQAGKEGFTPADYEYEVEWGYKKQALSLSRDFNLELEGQAQEQWKQLMLDKAPQPFKDSGAFKSAEQARVMGAVQSAKYKSEWNQDKVSLEVWTIGEESMAEVTMKMKNATEAGAADKHRQFIALFQESNLLLEKDMSKTKWALEKLKQSHAPQTVH
>NZ_CP009283.1|WP_039875555.1|5191254_5191923_-|YukJ-family-protein
MPLRPYGVLKGKITKGTPAPRSNDATPHYHAQVEAEGKTYELAINVKSKKNPSELLYLVGDKFKSEQITHLQTLEDGFTEIKTSLNHEIALDYIRGGLFEPKQMIALPYDVNGPDNDLNEKVDAYLRRAIDNQSAKIYVYGEPFPGGMHNIHMNQGNVDAFRRDDGIWQDGGIMIHFEDENKWLGMFLAFQSQSWCTDDKGHMERPVSQCSHKTVQIAEMSK
>NZ_CP009283.1|WP_081957458.1|5203473_5210127_-|DUF5011-domain-containing-protein
MNRKSASGKKLFSILMTGMLVLGMFPGPGQPTASALAADKVYAAAYMGAETAAGTNLPASINIGGSSTAVSWNIGEDTFALPYETVTVSGTTASGPVTASVEVIPPADYPLAYFVDSGRGGDSVGNGPTASPLYEAVKDLSGGSLINQVPDQRYVSGTTDWGFDDSVQKIKSSKDGGHTDPATDPSVWVVGVRAANDNIVYQLNALEAGTYTLSSGFYDWYGSRSRVIQPRIEYQDTSGGKHTLSLSQFNVNASKINSGEFTVPADADTSVPMTLTYAYISGEKPLLSWFAIAEGGIKSILDDAKANAASMVQVLLNGNDIQADNENGLTFKGFGVLSANSTSALLMDYKSEQPEKYAEMLQILFGGEHPLMTHVKIEMGNDRNNSTGPDPATMRTAEEEVNVKRHPGFQLAADEKAVNPDLKVSILRWSAPAWADTNDKIYTWYKNTILEAYRQYGYMTSYVNPHINEHAPDIAWTKQYAEKVKTDKEGFASAEEQALYNRIQVVISDEVGIGSFGGAMVSDESLRNAVPIAGYHYNTDDDAAGNFKKLAEQYDIEIWNSEAQATFSNSAFRPNNNVKDPIAAGTGIGGVGGPLEMSNTIIKGFVNSRRTHFIYQPAIGSFYEGGQYSFKELVSARDPWSGWIHYDAGLVILQHYSRFAELGWENEDNTAGIWRAVPKASSTGATGTNPVNGRNGTPSYITLAAPDKSDFSTVIVNDSEHTKTYKLQAVNMAYTGNPSLEVWETRAADAGKAFNSNYMQYLGDVSADGGGVYTVKVKPYSTVTVTTLDTKDKAEYNTPLPVEGERTVLDTDATGAVQNTGDKFLYADDFDYSDRTVVKIGADGKAAGTEGYIDSRGGSKGAIPRYTHDRNGAFEAYLPDGSDNYVLRQQLDRSLMGLGGTWNGGDPVTAIGDNRWTNYKASIDVSFEHDSTEGSANYAAIGARYQGGGSSHTIGGTPYVLKFWFDGGWQLLVNGGAVASGNAATGTGGVKIEGFNTAYDAWHNIAVQVAGATVTAYLDGVKLAAYTDPAPELSGRVDLASGYYHVRFDNLKVETVDGYAPYYSELLDNLEMYDLTADANPKLSYSGNWNHANGAGMFIYQRSTSTSQGAGAALSYTFEGTGLDILGPNDGSAKLEVTVDGKTAVQSAETIASKELYQTYALRGLKYGQHTVEFKVLNGTLLVDAVAVVSGEVQGSPDTAALAAAVSAAKETVKLDEYAEADWQLFTAALGSAEAALTDTAAYRLDQEGAAQLAERLVSAQNQLTTGDLRELAVLPDTATYAGKLPVLPQQVEATRADGSKLPVTVKWNTAEVSFDTPYDRVAVTGTYGNLKTVVYVEVVPQGLVYFVDPGVAAEGDTPPYTVVKELVGAGLLNEQADQLSTGDAVWGHTNTGANYGMKGLGGAVVTTDKSQTGVYGSNTRNTPLVYLFPLEAGKYTLTSFHRDWWSNANRTMDITVSYNDAEGKPVTETVRTGVVAGPNGVMLNHDFTLPVSGTVKYTINNTYSGNQAALVSYVAIARDKTIIANELAVNEAKSIIEGAAFNVKKEEANSEEAVQAWLQQTISGLEGLSETGVTLGDVTFTAFQGATEDTAGSFSFTVALSKGEALATGSASGTITLPEPDVTPPVITLNGDRVVNVKLGSDYTDAGATAADEVDGDLTDRIVTTVSSEVYGLTELDTSIADVYTFHYNVSDAAGNKALEVTRTVVVAEDPDTVKPVITLLGEPAVELENGAAYTDAGATAEDDRDGDLTGQIIATLTKGGQPVAVLDTAEAGTYLYHYNVSDAAGNAAAEVTRTVTVAEKELPPVTEPTPAPTPSPAPTPAPTDAPVQTAPPVAATPTPTPAVQNVRTLEQKDIPAAADGAVTVQLAEGTESVVLPAGIQGLTGSNTLRLAWSSAAVEFTPDALKSIVEKAAAGQAQAGQVRIRLTGLKTPAAAAEQLINSQAADSSLRLSAAGEVISFSLETVAADGIATKVTAFDVPLRLTFNVNPDANPDLLGVYYIAGDGSVQYIGGTLKNGKMTAAVSHFSQYAVLEYDKSFADVGSSMWANSVIKSLAARHIIEGISATEFAPQGQVTRAQFAAMIARALGLEAADGSTPAFRDVGADAWYADSIAAVNQAGLVLGRTADTFVPDSSITREEMAVMVVRAYEYLQGEKAQAASAGSFSDQLQISGWAQEAVSIAVEAGLLQGRGGQQFAPQALMTRAESAQVIYNLLKQ
>NZ_CP009283.1|WP_039875572.1|5210335_5211175_-|carbohydrate-ABC-transporter-permease
MVGSNKIFRVSLKVLVYALLAAAVFCMLIPYVWMLSSSLKMNKDVFSFPMQWIPDQPRWSNFVDIWTRIPLGRFIYNTAKLSVVVTILQLLTSSFAAYAFSKLQFKGKNLLFLGYIATIAIPWQAYMVPQFIMMRSLGLNNTHLSIILLQAFSAFGVFLMRQFYQGVPDELCEAARIDGLSEYGIWARIMLPLSKPALSTLTIFTFVNTWNDFLGPMIYLTKTELKTIQIGLRMFISQYSAEYGLIMAASVVSIIPVVIVFLALQKYFVQGVAASGIKG
>NZ_CP009283.1|WP_039875573.1|5211193_5212129_-|sugar-ABC-transporter-permease
MQNETVLRPKKAPKRILSKGVRDHLVAYSFIAPNFIGFAIFTLVPMFFAFVLAFVKWDGANPMEFIGFDNFARLIKDTTFHKALWNTIVYTIGVVPFTMAVALALAILLNQKIIARNFMRTVFFFPYVASLVAVAAVWNFIFSPTMGPVNNILHLISGVPIEDLPRWAADKQWAMFTVILFTVWKNMGYYMVIYLAGLQGINPELYEAAELDGAGAWRRFRNVTVPQLAPTTFFVLMILVINSFKVYDIFINLFAGADNQLNDSTRVMVYQIYNTAFRSLDYGYASAMAIVLFLLVLGITIVQFRGEKKYG
>NZ_CP009283.1|WP_039875575.1|5212198_5213545_-|sugar-ABC-transporter-substrate-binding-protein
MNYKRLYGMTFTAVLSVGLLAGCSGNNNNAQNNAAATTAPTGTNASASSEPSQEPVTLKWALWDWEATAYYKPLIEAYQKEHPNVTIEYVDLGSTDYMTMLSTQLSGGADLDILTIKDIPGYSNLVKQNHLEPLKGFMGTNSIDPALYGGTVEQIEVNDEVYALPFRSDFWIVYYNKDLFDKAGVEYPSNDMTFEQYDELARKMTSGSGAEKVYGAHYHTWRSAVQLFGILDGKNTVVDGSYDFLKPTYERILKEQEDGIVMDYATLKTSSTHYSGVFYNNSVAMMNMGSWFIATQIEKVKSGESQATNWGIVKYPHPDGVEAGTTLGTITSLAVNQKSEHKEAALDFMKFVTGEDGASVIASTGTIPAIKNDEVIGSITSIDGFPADDNSKAALTTVQTYLEMPMHEKSADIEVILNEAHDNIMTKNATIDEGLKDMNTRVQSLLNN
>NZ_CP009283.1|WP_081957460.1|5213901_5215629_+|sensor-histidine-kinase
MIVFALLIATLLSFFSYELISYYQRKTTIQATEFNLQLVSHIIEQDLLNLSVLAMTSSTNSTTNTLLADYFESPDAKARDALDVFSSMQEDFQINRSYNYVRRLIVTDNNGKFLQLDNSVSVSTPLTIHNIGQITGLNNEATEEYDQVIKDPLSTAYGIPFILPIYGDHASRIGTVYLLVNTSVITDKLKGYTLPEDSRLLLTLGNNHYEITGDKIQQITTPYEPVAYTEDEPVGPMTKLSEIRLEDEERTLAVSYVVRSGVELTQTIAGNQFAPKANIWIPIMFGVCLLVLVLSGIITLYLTRTISLPVEKLKKRIDKIAQGNFLLDRNIEWNSELGDVGRGINRLSQDIIALMDSRLADEKQKQELEYRMLQNQINPHFLYNTLNSIKWMATIQNATGIAEMTTSLSRLLRSIAKDNRRLLPLRDELNLLEDYFLIQKYRYGSTVTMVQSIADEELLSGLIPRFTLQPLVENAIFHGIEPKGRGDIQITVAKSGFADILITVEDNGVGMPEEQISHILSKQEEGAKGLFENIGLRSVNERLQLAFGEPYGLSIESKPGQYTQMKIVIPFQLKE
>NZ_CP009283.1|WP_047171203.1|5215661_5217311_+|response-regulator
MIKLLIADDEALVCIGLQSMLKWEQYNIEIVGVAHNGAQEEEMIDSLRPDIVISDIKMPIKTGLQVADSVRKKYGRVPLFIILTSYEEFEYARSAIEVQAADYLVKLELTPETLAASIQRAITLLGEYQTIESYPKLVHRGNLQAERDKFFVRLFNNLFENKNQYLLQKEDLDLDLSGSAYVVCTCRILGPDTVPPRGDKLVALCSSTVQMAKDTLTSVRPCHVTSLDLRNFAVTLPVCGTDPQLWMPDTRKLLADMASVLHNYFNVTIIGAIGFAVEDPYLLRESYLAARKALPAAVNAQSFVFFSEGKPPEQDFPLFDFSESRSEIRRAFEEMDTQALYAIISRMIEIFDGRSDLLVPATDAACNILYMATSLLADGEEIVEHIFGHEPEGYRAIYQMHTIEEIAGWLVCFRDGVSDMLSTRRQSYKEQIVKNVQEYIKRNLGSKLSLNQVADVFNFSPNYLSHLFSKTAKVNYVEYITETKITAAKEMMLRGEGRIYEISQKLGYESAFYFSKVFKKVTGMSPREYMQQAEVGAQAVRDSKESNRS
>NZ_CP009283.1|WP_039875580.1|5217417_5218086_+|hypothetical-protein
MHQAAAYAAAVPPHTYITFLALVEAIIPYTAACSAPGDVQSAGAVQFGVHEYLIWELDHNLSLWQGFYLTAVPLSAPTAALLNYGAVQFCALGHNQDDHGNPGGAGLPFAALHPSDRIRVLAMLEQSDQLDLAPLPPPYRNDLGIVRYMIDFINRQTLFGNYSEWPAYGSTRLKVPTERRLEGFPPGWSQVRYPGVVPGYRAFMGNVLTIERQGGGSSIVRS
>NZ_CP009283.1|WP_039879167.1|5218090_5219797_+|GMC-family-oxidoreductase
MFDADVIVIGSGGGGAVAAKELGEAGLKVLVLEAGAWYGNKHWANPNTEHGGDWSSDYKDLDIGIYKKVFNSYENNMNDVVSGAFRFGPADRRRTPWHRIMRQKGDIWQASGVGGTTQHYWSQSPRAFPQAIDQVWPLSYRELIPYYEKAEATLPVQFSPTTPKEELFYYGAKKAGWQLNPTLNVTTPGYRPNPNAILPPNDRLMDPGCSLEELSDMEGCTLRGNCVNGCASGPSVDKIAKRSTLVSYVPLALKTGNVAIRPNSFVIKILTSQDPKEGLRATGVQFRDTWTGEIGELTARTVIMAAGCIETPRLWLNSSLPFNEWVGRGLTNHCFDWVGGVFEEKELMRIMGLPEVYPYVGHTSGARVDIPGTGIFQVSCLSPGLMSFLTYGFSEAGYNALNPPEPGEPWNIRGRVAGPQLKELMRNYSRTMTMLLLTDDETLYRNRVEVDPLLKDEHGPIPIVYYTPSPKTLKRRDQLARYASETLRQAGARQIIRSDTPFGFMLHLESTMRMGYVTDANCEAFQVKRLFIADNSVHFNGIGGPNPTLTTQALATRTAEKIVTEYFS
>NZ_CP009283.1|WP_039875581.1|5220072_5221581_+|spore-germination-protein
MRVNKRATDPFAKKIRALEPEVNIPISEQIMENKKGIAQVFANCSDLVVRELLIFGSMPAMVVYLDVLIDKQLWDDGFLEPLMQEAAPPISDPSRLEEQLKFGFSSIVQPAVVKNMTETARRIVSGETILFIEGSAQAFAFSLKDKLNRALDEPSTEAVIRGPRYGFIEKMSINLALIRHRLRTPRLKTETLSAGSLSRTDITIVYIEGIADKSVVEELKRRIAGIDMDSILESGYIEELISDHPYSPFPVMQATQRPDMTTGSLIEGKIAVITDGSPMVLILPVTFWFGFQSAEDYYMKFMFATMLRWLRYLFAFFAMALPSIFIAVTTFHQEMIPTSLTLSLAAAREVVPFPAIVEALIMETTFEALREAGIRLPRPVGQTISIVGALVIGQAAVQAGIISATIIIVVSITGISSFLIPNPGMSQAISIIRFPLMLLAATFGLYGLGIGLLVILVHLVNLRSFGVPYMSPLAPLTFNGLADTLLRAPWQALKKRHKHTRH
>NZ_CP009283.1|WP_039875582.1|5221598_5222768_+|Ger(x)C-family-spore-germination-protein
MSRFIRTCRYMLLLIILCMTTGCWDRREMDDLALIMGSGIDLTDSGLVEVSYQIALPTGIPSAVKSGGSQKQVVVISAKGNDLQEALGKVQQQMSRYVYFGHREVFLIGESYARHGLNQVQDLFTRFPETRYNSYVLTAYGATAKEILSAPYPMELIPALAISKIQSSRQSFSVKFDEFLKAFSSPGTSPVTAAIRIIHKGTDKESVAIDRTAVYLGNKLSGFTEPSELDLLRWWIGDPYRLGFTIQAEPEEKDYKGTISVKSSESRVHVHTKILDDHPEAKVIFHTVVKVVSNNTRLNLDNEKNRKNVEQQFSRQLQSRIEGLLTHVQKEMRSDIFGMGEEIHIEHPYFWKKIQDSWSEIFPAMPVQVEVELQIEQLGKTHGRAYPKK

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Crispr_ID: NZ_CP009283_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009283_12

5531796-5531923

Orphan

Consensus_repeat	Method
GAGCGCTTTCGTTCCCTGCGGGAACACGCTGGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009283_12

>merge|NZ_CP009283|12|5531796-5531923|CRISPRCasFinder
GAGCGCTTTCGTTCCCTGCGGGAACACGCTGGACTGTCGCGCTTGTAGTGGCGTGCAAGTGACTGTCGGTGCAGGAGCGGGCATGTGGTGCAATGAGCGCTTTCGTTCCCTGCGGGAACACGCTGGAC

>NZ_CP009283|12|12|5531796-5531923|CRISPRCasFinder
GAGCGCTTTCGTTCCCTGCGGGAACACGCTGGAC	TGTCGCGCTTGTAGTGGCGTGCAAGTGACTGTCGGTGCAGGAGCGGGCATGTGGTGCAAT
GAGCGCTTTCGTTCCCTGCGGGAACACGCTGGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009283.1\|WP_039876039.1\|5519744_5520860_-\|Nif3-like-dinuclear-metal-center-hexameric-protein	unknown	unknown	gnl\|CDD\|376614
NZ_CP009283.1\|WP_039876052.1\|5530733_5531627_-\|GTPase-Era	unknown	unknown	gnl\|CDD\|234624
NZ_CP009283.1\|WP_039876066.1\|5537460_5538642_-\|sporulation-protein-YqfD	unknown	unknown	gnl\|CDD\|377731
NZ_CP009283.1\|WP_039876074.1\|5539752_5540754_-\|flotillin-like-protein-FloA	unknown	unknown	gnl\|CDD\|237462
NZ_CP009283.1\|WP_039876046.1\|5526293_5528375_-\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NZ_CP009283.1\|WP_039876064.1\|5536473_5537445_-\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224616
NZ_CP009283.1\|WP_144027046.1\|5525563_5526037_-\|DUF188-domain-containing-protein	unknown	unknown	gnl\|CDD\|224585
NZ_CP009283.1\|WP_039876057.1\|5533305_5533701_-\|diacylglycerol-kinase-family-protein	unknown	unknown	gnl\|CDD\|260134
NZ_CP009283.1\|WP_039879214.1\|5521608_5522433_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039876054.1\|5532470_5532890_-\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|183511
NZ_CP009283.1\|WP_039876061.1\|5534194_5536456_-\|HDIG-domain-containing-protein	unknown	unknown	gnl\|CDD\|224397
NZ_CP009283.1\|WP_039876040.1\|5520835_5521612_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|378972
NZ_CP009283.1\|WP_039876047.1\|5528367_5529255_-\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
NZ_CP009283.1\|WP_039876058.1\|5533700_5534198_-\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|376735
NZ_CP009283.1\|WP_039876071.1\|5539124_5539736_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039876076.1\|5540821_5542189_-\|nodulation-protein-NfeD	unknown	unknown	gnl\|CDD\|223961
NZ_CP009283.1\|WP_039876041.1\|5522528_5523662_-\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|236413
NZ_CP009283.1\|WP_039876042.1\|5523702_5525523_-\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_CP009283.1\|WP_039876049.1\|5529691_5530447_-\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|273175
NZ_CP009283.1\|WP_039876069.1\|5538638_5538932_-\|sporulation-protein-YqfC	unknown	unknown	gnl\|CDD\|131903

Protein	Function_ID	Function_description	E-value
NZ_CP009283.1\|WP_039876039.1\|5519744_5520860_-\|Nif3-like-dinuclear-metal-center-hexameric-protein	gnl\|CDD\|376614	pfam01784, NIF3, NIF3 (NGG1p interacting factor 3). This family contains several NIF3 (NGG1p interacting factor 3) protein homologs. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown.	1.56307e-53
NZ_CP009283.1\|WP_039876052.1\|5530733_5531627_-\|GTPase-Era	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	5.05354e-179
NZ_CP009283.1\|WP_039876074.1\|5539752_5540754_-\|flotillin-like-protein-FloA	gnl\|CDD\|237462	PRK13665, PRK13665, hypothetical protein; Provisional.	0
NZ_CP009283.1\|WP_039876046.1\|5526293_5528375_-\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NZ_CP009283.1\|WP_039876064.1\|5536473_5537445_-\|PhoH-family-protein	gnl\|CDD\|224616	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms].	3.82393e-142
NZ_CP009283.1\|WP_144027046.1\|5525563_5526037_-\|DUF188-domain-containing-protein	gnl\|CDD\|224585	COG1671, COG1671, Uncharacterized protein conserved in bacteria [Function unknown].	9.34874e-45
NZ_CP009283.1\|WP_039876057.1\|5533305_5533701_-\|diacylglycerol-kinase-family-protein	gnl\|CDD\|260134	cd14265, UDPK_IM_like, Integral membrane undecaprenol kinase and similar enzymes. This mostly bacterial family of homo-trimeric integral membrane enzymes, the products of the dgkA gene, catalyzes the ATP-dependent phosphorylation of undecaprenol to undecaprenyl phosphate. C55-isoprenyl (undecaprenyl) pyroposphate acts as a scaffold for the assembly of peptidoglycan components; undecaprenol kinase (UDPK) is involved in recycling undecaprenyl units for re-use in the peptidoglycan biosynthesis. UDPK does not participate in the de-novo biosynthesis of undecaprenyl phosphate. Gram-positive bacteria have a large pool of free undecaprenol, in contrast to gram-negative bacteria. UDPK may also play a role in a stress-induced pathway that affects the function of ribosomes. In Streptococcus mutans, UDPK has been shown to be required for biofilm formation, such as in the case of smooth surface dental caries. Members of the UDPK family have low activity as diacylglycerol kinases (DAGK), and many of them are annotated as DAGKs.	8.26185e-42
NZ_CP009283.1\|WP_039876041.1\|5522528_5523662_-\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|236413	PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated.	0
NZ_CP009283.1\|WP_039876054.1\|5532470_5532890_-\|cytidine-deaminase	gnl\|CDD\|183511	PRK12411, PRK12411, cytidine deaminase; Provisional.	3.37957e-63
NZ_CP009283.1\|WP_039876061.1\|5534194_5536456_-\|HDIG-domain-containing-protein	gnl\|CDD\|224397	COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only].	0
NZ_CP009283.1\|WP_039876040.1\|5520835_5521612_-\|SAM-dependent-methyltransferase	gnl\|CDD\|378972	pfam12847, Methyltransf_18, Methyltransferase domain. Protein in this family function as methyltransferases.	3.75414e-68
NZ_CP009283.1\|WP_039876047.1\|5528367_5529255_-\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP009283.1\|WP_039876058.1\|5533700_5534198_-\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|376735	pfam02130, UPF0054, Uncharacterized protein family UPF0054.	4.08343e-55
NZ_CP009283.1\|WP_039876076.1\|5540821_5542189_-\|nodulation-protein-NfeD	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	4.87701e-82
NZ_CP009283.1\|WP_039876066.1\|5537460_5538642_-\|sporulation-protein-YqfD	gnl\|CDD\|377731	pfam06898, YqfD, Putative stage IV sporulation protein YqfD. This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis is known to be essential for efficient sporulation although its exact function is unknown.	6.57536e-126
NZ_CP009283.1\|WP_039876042.1\|5523702_5525523_-\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_CP009283.1\|WP_039876049.1\|5529691_5530447_-\|DNA-repair-protein-RecO	gnl\|CDD\|273175	TIGR00613, DNA_repair_protein_RecO, DNA repair protein RecO. All proteins in this family for which functions are known are DNA binding proteins that are involved in the initiation of recombination or recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	5.9122e-73
NZ_CP009283.1\|WP_039876069.1\|5538638_5538932_-\|sporulation-protein-YqfC	gnl\|CDD\|131903	TIGR02856, Uncharacterized_protein_YqfC, sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect. [Cellular processes, Sporulation and germination].	3.69643e-20

>NZ_CP009283.1|WP_039876052.1|5530733_5531627_-|GTPase-Era
MKFKSGFVAIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTANNSQIVFLDTPGIHKRQSKLGDYMNQTALSTLHEVEAVLFLVDASEGMGGGDRFIAEQLKEVKTPVILVMNKIDKIEPEALLPLITEYNKLHTFAEIVPISAKVGSNVNTLLEQISKYLPEGPQYYPEDQVTDHPEQFVCAELIREKILHMTREEVPHSIAVGIEDMRVEQNGVVHISAIIFVERDSQKGIIIGKQGALLKEVGRRARTDIQNLLGSKIFLELWVKVKKDWRNQDRVLRDLGFHKDL
>NZ_CP009283.1|WP_039876049.1|5529691_5530447_-|DNA-repair-protein-RecO
MLHRVEGIVIRSMDYGEGNAIITLCTENAGKVGVLVRGAKKVKSRHAALIQLFTTGEFVFFRNNGGLGTLNAGEITQSRHGLRTDLVKAAYASYACELLDRVLHDEETGSFWFRQLSACLSALEEDKEPGIIINVFEMKILQAAGYGPQLDQCIACGLDKPAEELRISPRLGGVLCRSCRHNDPPAMEISPRALKLLRVFAALDLTRLGNVDVKEATRSELKTVMRAFMDAQLGLKLKSQGFLDQLDKYNI
>NZ_CP009283.1|WP_039876047.1|5528367_5529255_-|glycine--tRNA-ligase-subunit-alpha
MNFQQMILTLQQFWAEQNCILVNPYDTEKGAGTMNPMTFLRSLGPEPWKVAYVEPSRRPSDGRYGENPNRLYQHHQFQVIIKPSPDNIQELYLDSLKALGVDPLLHDIRFVEDNWENPSLGCAGLGWEVWLDGMEITQFTYFQQVGGIETSPVAVEITYGMERLASYIQEKENVFDLEWVDGVTYGDVFHQPEVEHSTYTFEVSDVQMLFTLFNTYEQEARRAMENHLVFPAYDYVLKCSHTFNLLDARGAISVTERTGFITRVRNLARTVAATYMEEREKLGFPLLKKEGAEHV
>NZ_CP009283.1|WP_039876046.1|5526293_5528375_-|glycine--tRNA-ligase-subunit-beta
MSKDILFEIGLEEIPARFIRAAMEQLQDRTAKWLDASRIEHSGVTAYATPRRLAVLVKEAAEKQSDVSEEVKGPSRKIALDANGDWSKAALGFARSQGVDPEQFTFKELAGVEYIYVTKNSDGVETSSLLVEGLTGIVNAMTFPKNMRWGAYDFKFVRPIRWLVALFGQEIVNLEITGVKAGNVSRGHRFLGTDAVIAQPADYVEALRAQHVLVDVKEREALILEQINKLAAEKEWTIAIKEDLLEEVLFLVETPTVLFGTFDPSFLDIPQDVLITSMREHQRYFPVLDSAGKLLPFFVTVRNGNAESLDVIAKGNEKVLRARLSDAKFFYEEDQKLQISDALAKLENIVYQVELGSVGDKVRRIRAIADSLAAKLGLSAAAAAEVSRTADICKFDLVTQMVGEFPELQGTMGEDYARKAGEAENVAKGIFEHYQPRFAGDSVPSTEAGLVVSLADKIDTIVGSFSIGIIPTGSQDPYALRRQAAGIVQMLLEHKLSISLQEIFTAAVEVHENLRSEKHFAPELRNNLYEFFGLRVKRLLADDNIRYDVVEAVTAAGFDDIVDVVGRSRALTEAVSTQDDFKVTVDSLTRVSNLAAKAGEGAVIEPSLLKEEAEVKLYETWQSIHAPYQEAIAARNAAEALRILSGLKDAVTGFFDSVMVMAEDEQIRTNRLALLAGVDADSRVFADFGKLVW
>NZ_CP009283.1|WP_144027046.1|5525563_5526037_-|DUF188-domain-containing-protein
MEKPRGAKIVVDGDACPVKKEITACARTFGIPVLMVSSYDHVLQADEGVTVVQVDRGADSADLYIANHIAAGDIVITQDYGLAALALGKRCRVLSNRGQEYEDSKMDFMLEGRHARAVERRRGHYSKGPKAITAEEKNLFQHKLTKLLTILQENVQQ
>NZ_CP009283.1|WP_039876042.1|5523702_5525523_-|DNA-primase
MASGHGNIPEEVIESVLARHDIVETVGKVVHLTKQGKYLWGLCPFHSEKSPSFTVTPDRGVFHCFGCGMGGNAIKFRMEIEGLSFPEAVRIMAEESDIAIPEGRGGTLSPPDPERDRLISAYELSAKFYHFLLKNTEYGTAAMNYLRSRNFSDKMIDQFQIGFAPDRWDTLLQFLEKRGFDLAEMEKGGLLSARGEGKGYIDRFRGRIIFPIANRMGKVVAFAGRILGDGQPKYLNSAESRIFNKSRILYNLHQSKASIRKTRQIVLFEGYGDVISAWEAGVHNGVATMGTSLTESHVALMKSLGDEIVLSYDGDKAGQAAALKAIPMLEESGLRVKVAVLPGGMDPDEFISRHGGESFMERIIDSAVSAIKFKLIYLKKNHILLEEDGKIAYVKEALQIIATLQSSTEREVYLREISSELELSYDSLKQDCNLLRASMQKNMPEGDNNDNRWNNGRHKKGQVQTPALLPAYHAAERRLLSLMIQDPDAAAYVGERLGEDFNIDDHAAIAAYLYAYYAQGKPPGISRFLSSLQDDRLEKTATAISMMDTPPDWNTQVLDDCIREVKKYPVQRKMEQKREEMIQAEKSGDFLRAAQIASEIITLERQ
>NZ_CP009283.1|WP_039876041.1|5522528_5523662_-|RNA-polymerase-sigma-factor-RpoD
MANDQHTELEAEFTLDQVKDQLIEQGKKRSSLNYKDIMEKLSPFDQDPEQMEEFYEQLSDHGIEVVNDNEDEGSPLRQGEDNENNDSDDFSFDDDLSLPPGIKINDPVRMYLKEIGRVPLLSADDEVELAMRIKNGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPSPEEIAAEMELTVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFLE
>NZ_CP009283.1|WP_039879214.1|5521608_5522433_-|hypothetical-protein
MNLEKRETIIKEIQYWRRSKLLPEQYCDFLTNLYNDEDKIKDSNPVSLQNLQQGSIKIWLFGFGIISLIFMISLYFSVFPWPLQLATALCVLVVCYGYSAIYRDRNQTISLLLAGAGSVLTMGFGLWMIALHDLDPDFWRPLLIAGCGLLWSVLGFSLRIGLLHYCGIAFWALLYAGFSGQMRPDASMLELELLWLPLCVLMVWLSWLLYHKVSGVSGVYLGVGVSLWLMPEVDALWLREGFPEWVSLLLIVKIAAGLALLFIFRKKWITWVAS
>NZ_CP009283.1|WP_039876040.1|5520835_5521612_-|SAM-dependent-methyltransferase
MNKVKLSDRLQLLLEQVPEGSRLADIGSDHALLPAAAVESGKAVSAIAGEVNPGPYEAARRGVAEAGLGAKIAVRRGDGLEVLEPGEADCITIAGMGGSLIAAILERGRVLGKLEGVKTLALQPNVGEDILRRWLLNNGWVVTTEHILEEDGKTYEVLTALPEGQAFGLTNEQLYLERVLPGGVVLSPDLLVQMGPWLLEKPNAVFFAKWQGEIAKLEGILASLSRSELESAEEKRTAIRAQIKKISEVLECLPKDRL
>NZ_CP009283.1|WP_039876039.1|5519744_5520860_-|Nif3-like-dinuclear-metal-center-hexameric-protein
MFAKGQTVISYMEQLAPKHLAEEWDNVGLQLGSLQKEITGVLVALDVNDEVVDEAIAKGCNLIIAHHAIIFRPIKGIQTDTPMGKLYEKLIKNDIAVYISHTNLDVAEGGMNDWMAEALGIEDGAPIKDIHTDQLSKLVVFVPKDHHQKVLDAILNAGAGWIGNYSHCSFNIEGYGTFVPREGSDPFIGEAGKMERAEEIRIETIVPLSVRNKVVQAMLKAHPYEEVAYDLYSMDLKGRSFGLGRVGRLKEPVTLGEFIETVKKGLDVEHVRVVGDLNRRIRKAAVMGGSGAKYYNSAIFKGADVLVTGDIDYHTAQDAYLAGITLIDPGHNAEKIMKVKVAEWMSGKLTEHKYDTTVYASEIGTEPFRFL
>NZ_CP009283.1|WP_039876054.1|5532470_5532890_-|cytidine-deaminase
MESALLLQEAIKARANAYIPYSRFGVGAALLDQDGHVHHGCNIENAAYGPTNCGERTALFRAVADGHKPGSFRAIAVVADTDGPVSPCGVCRQVMVELCSPDMKVILGNLKGDMVETTVRDLLPGAFTTADLEQGQAPE
>NZ_CP009283.1|WP_039876057.1|5533305_5533701_-|diacylglycerol-kinase-family-protein
MVKNTAVGHKKFWHSFRFAAHGIASAFKSELNMKVHSVLAVAVLAAAAFFRLPPLSWILLLLAITLVLSTELLNTAIEATIDLVSPDIHPLAKTAKDTAAGAVLLTAVFAVIVGIYVFYHPVMDWITGFMS
>NZ_CP009283.1|WP_039876058.1|5533700_5534198_-|rRNA-maturation-RNase-YbeY
MSLAINWNNEQEEYEITDALIALLDSILQKAGEAEGMDKGEVDLTFVDNDRIHELNREYRGIDRPTDVLSFAMNEAGEDEPEIIYAVDGDEEYGEIPNSLGDIIISVTRAKEQAEEYGHSLERELGFLFVHGFLHLLGYDHQDAESEAEMMSKQEQVLVQVGLTR
>NZ_CP009283.1|WP_039876061.1|5534194_5536456_-|HDIG-domain-containing-protein
MASKQPSKLSGFVYSNTGWKYSAATRYALFLFLGLVFYFSLSSDLLPKRYDIKVNTTSAKEISAPKQILDNKAKLKAQEAAAEGVQNKYAIIPIRADSLVTLLLDRIDSLNQDDLISQSEKIGIYKDVIPQRANDFVQSFINSSRSAGTYSDTLLEEIQTGIAEQAYTIPEETYIKIPRLTTQDIIEMKQVAREIVIKLMNDQIVDAQTARAKVAEQVSVSSLSQRTAREVTQELVRLVIMPNKFFDEEATKEAKVEARENTPDVFIEQGDVLVAKGEMITPELYALLDENGLLSNEVNYWPQFGLLLLSVMLSAGLMVFIRYSGGTGSSGFKYNNSQLLMLVLVFVITMITMKLAAFLQTDVRYYVGFLAPVAIGAMLIAMLLDMTLAYFCSILFSVLASIILNVQQNTVFDFTFGFFALVVSYVAIFATHRAGQRSTLLKGGIMVSLFGTVTVFMLKLLGGGAWNDTQTLYSLGFAFAGGLLTAVLVIGLMPFFEATFGILSALKLVELSNPNHPLLRKLLTETPGTYHHSVMVGNLSEAAAEAIGADGLLCRVGSYYHDIGKTKRPFYFIENQNNMENPHDSIEPALSKSIIVAHARDGVEMQKEYKLPKPIRDIAEQHHGTTFLHYFYHKALKIAEEKGVSPDFTEEDFRYPGPKAQSKEAAVVGIADSVEAAVRSLRKPTVVQVETMIEKIIKSRLDDHQFDECDLTIKELDIIARTLKETVMGIFHSRIEYPEEVKKPKNEEGAATT
>NZ_CP009283.1|WP_039876064.1|5536473_5537445_-|PhoH-family-protein
MSEQTASIRISLQNAGEAQSLFGPQDGFLKIIESEIPAVIDSREAEITIRGAERQVDMLEQLFNVLLSLIRSGYILSERDVQYAVELAKEFRADQLLDLFKGEITTTFRGKPIRVKTIGQKHYVTTIKKRDIVFGIGPAGTGKTYLAVVLAVAALKEGSVKRIVLTRPAVEAGESLGFLPGDLQEKVDPYLRPLYDALYDVMGPDQVAKALERGLIEIAPLAYMRGRTLDDSFIILDEAQNTTPEQMKMFLTRLGFGSKMVITGDVTQIDLPRGKKSGLIEAKAILSGIEELGFVYFAEQDVVRHSLVQKIIVAYDRSAENLD
>NZ_CP009283.1|WP_039876066.1|5537460_5538642_-|sporulation-protein-YqfD
MKEPPLSALRGFVTLHVTGPAVESFINAVTEAGIVIWEVKPARDGASLNLLLDDFFSLRPLLKKTGCRMHVTARSGIPFRLARLWRRKLFSGGILLFGVMLLLFCSMIWTVRVEGNQRIASDDLLAAARQEGIYPFQWIWRMDEPDMLSKRMISRVPGISWIGVERTGTSITLRIVEADQPEQRPLLTQRHLVSRTDAVVTGIYAEQGRPVVGLNARVKKGQILISGALGDEENIEYVVAKGEVRGLVWHEYNIEVPLKTTGSTYTGERKDRTYLVIGDWAVQLWGYGKAGFSKSRTLTENNMLSWRSLQLPLGVMTEKELEVEYSSSVKTAEEARAEGIARAKSDILARYGTDSTIKSQKILHEKKDNGKVYMKVLFEVEERIAEELPIVNN
>NZ_CP009283.1|WP_039876069.1|5538638_5538932_-|sporulation-protein-YqfC
MTRIGRRLRGWTNGVLDLPQDVLQELPRITLIGNKELYIENHRGVLQFSSGQLTIALAKGSLEISGQELMIRNILGQELAVEGIIGEIRYKGSEEKP
>NZ_CP009283.1|WP_039876071.1|5539124_5539736_-|hypothetical-protein
MGSLIYIAVIILIAIFTNVNKAAKNRKKPNARGGMPTFGGGGDDQPQRRDRGPGPEGSEMRPAGSGFPAPDSGMPSRDRSFGEEHEHELAPAWKESPQVPTPDYETGEGMSYEQSGDQEDSVQARTERMERELKRLQAAYDGMAAYGLEKGTDGAVEAPENSRAAVSPLPGGAAGSAQALRNGLVWAEILGPPRSRRPHSTRR
>NZ_CP009283.1|WP_039876074.1|5539752_5540754_-|flotillin-like-protein-FloA
MGEATWIPILLIAVVVIIVLSVFFSFFPVMLWISAWASGVRISIITLVAMRLRRVTPSRIVNPLIKATKAGLGLNINQLESHYLAGGNVDRVVNALIAAQRANIPLEFTRAAAIDLAGRDVLLAVQMSVNPRVIETPIVAAVARNGIEVKVKARVTVRANIDRLVGGAGEETIIARVGEGIVTTVGSSNSHKDVLENPDSISRTVLSKGLDSGTAFEILSIDIADVDVGKNIGAYLQTEQAEADKRIAQAKAEERRAMAVAHEQEMKAKVVEMKALVVESESQVPLAMAEALRSGQLGVMDYMNLKNIEADTQMRGSLGKANDGDDPNRPTNK
>NZ_CP009283.1|WP_039876076.1|5540821_5542189_-|nodulation-protein-NfeD
MSRFRKMLVACTAVMLLLMLCVPVMAGASGTTDRQAGAAQSGPVFIIPVDQEIERGLQSFLERGFAEAANYGAVLIVLEIDTPGGLVDSAEQIGTLVRDSEIPVTAYIKGDAASAGSYIALNADTIIMKPGSMIGAASLVDMNGNSVDDAKMISYWKSKMVGAATLNGRDPDIAAGMMDVNLVVNKPELGVSKTAGQIIALTSDEALKAGYAEHLAATPEEAIGLLGYSTDDIFHVKQTGAEKLSHFLTNPLVMVILLFIGIAGIVIELLVPGFGAPGIIGTLAFALYFFGNYVAGFAGAETWLLFILGLVMLVLELFVPSFGILGLLGSICLIAGVVRAAFSYTHALLNLGIAFAAAAVVIAVVVVIFKERGIWNRFILQESLTKEEGFVPVLEKLSLVGAAGLSVTPLRPAGTAMFNGERVDVVTEGSFISSDRPVSVVKVEGGRVVVKETTE

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Crispr_ID: NZ_CP009283_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009283_13

5602521-5602616

Orphan

Consensus_repeat	Method
AAGCATATGCTTAAGTTTTGTGAGCATAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009283_13

>merge|NZ_CP009283|13|5602521-5602616|CRISPRCasFinder
AAGCATATGCTTAAGTTTTGTGAGCATAGTCTTCCGCGAGTCTTCTTCGTACAAAACTCGCTTCGAAAGCATACGCTTAAGTTTTGTGAGCATAGT

>NZ_CP009283|13|13|5602521-5602616|CRISPRCasFinder
AAGCATATGCTTAAGTTTTGTGAGCATAGT	CTTCCGCGAGTCTTCTTCGTACAAAACTCGCTTCGA
AAGCATACGCTTAAGTTTTGTGAGCATAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009283.1\|WP_039876187.1\|5603317_5604337_-\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|235511
NZ_CP009283.1\|WP_039876177.1\|5597374_5599189_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP009283.1\|WP_039876178.1\|5599371_5599848_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039876188.1\|5605956_5606508_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236608
NZ_CP009283.1\|WP_076418364.1\|5592800_5593361_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|271355
NZ_CP009283.1\|WP_039876175.1\|5596073_5597246_-\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
NZ_CP009283.1\|WP_039876182.1\|5601437_5602448_-\|GPR-endopeptidase	unknown	unknown	gnl\|CDD\|235078
NZ_CP009283.1\|WP_039876196.1\|5608226_5609180_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|238571
NZ_CP009283.1\|WP_039876172.1\|5593425_5594457_-\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NZ_CP009283.1\|WP_039876168.1\|5590865_5592701_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP009283.1\|WP_052421447.1\|5594680_5595403_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039876204.1\|5611167_5612346_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039876200.1\|5610060_5611077_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP009283.1\|WP_039876181.1\|5599881_5601228_-\|stage-II-sporulation-protein-P	unknown	unknown	gnl\|CDD\|377838
NZ_CP009283.1\|WP_047171518.1\|5595489_5595981_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|236088
NZ_CP009283.1\|WP_039876207.1\|5613117_5614107_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380629
NZ_CP009283.1\|WP_039876193.1\|5607227_5607869_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|180618
NZ_CP009283.1\|WP_039876184.1\|5602853_5603126_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP009283.1\|WP_052421448.1\|5604715_5605960_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379219
NZ_CP009283.1\|WP_039876191.1\|5606780_5607020_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009283.1\|WP_039876187.1\|5603317_5604337_-\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	1.76179e-78
NZ_CP009283.1\|WP_039876177.1\|5597374_5599189_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP009283.1\|WP_039876188.1\|5605956_5606508_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|236608	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional.	4.13269e-46
NZ_CP009283.1\|WP_076418364.1\|5592800_5593361_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|271355	cd00446, GrpE, nucleotide exchange factor GrpE. GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. In bacteria, the DnaK-DnaJ-GrpE (KJE) chaperone system functions at the fulcrum of protein homeostasis. GrpE participates actively in response to heat shock by preventing aggregation of stress-denatured proteins; unfolded proteins initially bind to DnaJ, the J-domain ATPase-activating protein (Hsp40 family), whereupon DnaK hydrolyzes its bound ATP, resulting in a stable complex. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent. Over-expression of Hsp70 molecular chaperones is important in suppressing toxicity of aberrantly folded proteins that occur in Alzheimer's disease (AD), Parkinson's disease (PD), amyotrophic lateral sclerosis, as well as several polyQ-diseases such as Huntington's disease and ataxias.	6.2397e-58
NZ_CP009283.1\|WP_039876175.1\|5596073_5597246_-\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
NZ_CP009283.1\|WP_039876182.1\|5601437_5602448_-\|GPR-endopeptidase	gnl\|CDD\|235078	PRK02858, PRK02858, germination protease; Provisional.	0
NZ_CP009283.1\|WP_039876196.1\|5608226_5609180_+\|sugar-kinase	gnl\|CDD\|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	5.23059e-108
NZ_CP009283.1\|WP_039876172.1\|5593425_5594457_-\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	8.07914e-147
NZ_CP009283.1\|WP_039876168.1\|5590865_5592701_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP009283.1\|WP_039876200.1\|5610060_5611077_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.00904e-96
NZ_CP009283.1\|WP_039876181.1\|5599881_5601228_-\|stage-II-sporulation-protein-P	gnl\|CDD\|377838	pfam07454, SpoIIP, Stage II sporulation protein P (SpoIIP). This family contains the bacterial stage II sporulation protein P (SpoIIP) (approximately 350 residues long). It has been shown that a block in polar cytokinesis in Bacillus subtilis is mediated partly by transcription of spoIID, spoIIM and spoIIP. This inhibition of polar division is involved in the locking in of asymmetry after the formation of a polar septum during sporulation. Engulfment in Bacillus subtilis is mediated by two complementary systems: the first includes the proteins SpoIID, SpoIIM and SpoIIP (DMP) which carry out the engulfment, and the second includes the SpoIIQ-SpoIIIAGH (Q-AH) zipper, that recruits other proteins to the septum in a second-phase of the engulfment. The course of events follows as the incorporation firstly of SpoIIB into the septum during division to serve directly or indirectly as a landmark for localising SpoIIM and then SpoIIP and SpoIID to the septum. SpoIIP and SpoIID interact together to form part of the DMP complex. SpoIIP itself has been identified as an autolysin with peptidoglycan hydrolase activity.	5.19193e-92
NZ_CP009283.1\|WP_047171518.1\|5595489_5595981_-\|N-acetyltransferase	gnl\|CDD\|236088	PRK07757, PRK07757, N-acetyltransferase.	9.88541e-55
NZ_CP009283.1\|WP_039876207.1\|5613117_5614107_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|380629	cd19974, PBP1_LacI-like, ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	5.28294e-55
NZ_CP009283.1\|WP_039876193.1\|5607227_5607869_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|180618	PRK06552, PRK06552, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional.	1.55793e-107
NZ_CP009283.1\|WP_039876184.1\|5602853_5603126_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.37685e-21
NZ_CP009283.1\|WP_052421448.1\|5604715_5605960_-\|hypothetical-protein	gnl\|CDD\|379219	pfam13490, zf-HC2, Putative zinc-finger. This is a putative zinc-finger found in some anti-sigma factor proteins.	2.44525e-10

>NZ_CP009283.1|WP_039876182.1|5601437_5602448_-|GPR-endopeptidase
MELDLQLYSVRTDLAVEAKEIAQGPQKTPIPGVNEEVEEADGIKVTRLGVATAAGSQAIGRALGNYVTLEVPALRGGDTGLQQKVAVVFAREFEQFLSRIGISKNSSVLIVGLGNWNVTPDSLGPLVVENALITRQFYELVPDQVSPGYRNVSAIAPGVLGLTGIESSEVVQGIVDRTRPDLIIAIDALASRSLERINTTIQIADIGIHPGSGIGNKRRGLTREILGVPCIAIGVPTVCYASTIVNNVLEMMSNHFGQMADGGAHTKEIMGMLDDISEHERLQLVKEVLEPLGHDLIVTPKEIDEFIEEIANIVASGLNAALHDAVDPGNVGAYTH
>NZ_CP009283.1|WP_039876181.1|5599881_5601228_-|stage-II-sporulation-protein-P
MNRKWFQLWNIGRLRGKLLDILSLGRTMLLLAGGSLVFFMLLGAGGLAGTKLNTSPVPSMKGLAASLSSGFFMELLGMEVPHLPKSGEASAFSAPKVTSFVFRMLTSVDPGNPKSLLSREVPGLAAGDPFLLREGSGGTGGAPADYHPGTDELAGGEEDHPGAGNSGAADPGAAADPDPDKPADGQAVQPQPTAAPDSGSPAEQGGSGAGRDNSGAEDTSIKRILVYHSHPREAYNPLLGTESDNPSSASPAKNVLLVGSYIADRLEQRGIGTVHAKDDYATEVPDYNWNFSYKYSRITIKAAMAANQEMTELIDIHRDSQRHGKTTADINGQSYAQVYFILGHGNKNWKKNEAFANSIHQLLEKDYPGLSRGIWGKASGNGNNGEYNQSLSPNSVLIEVGGIDNSADELKRTADVLADAIAEVYWNSHDAEKAAAPDKSPVSEEGSG
>NZ_CP009283.1|WP_039876178.1|5599371_5599848_-|hypothetical-protein
MSRFGKKLVMIGVYAGIGILIGIQFSGSGAARTEAVAPGWNGPAGLQQAGQAAAAAGTGAVQGSPAYVYVPMAVDPATGAYTALPAFQPQSPAQTPADSSGLPQQEVQDYSVLTPEQLLIPEEQQPGIDRLADKTAGLLQQASQKSIRWIVSLFDSAD
>NZ_CP009283.1|WP_039876177.1|5597374_5599189_-|elongation-factor-4
MTDVQKRQQQIRNFSIIAHIDHGKSTLADRILEYTGALSSREMQEQVLDQMDLERERGITIKLQAVRLTYKADDGQEYLLNLIDTPGHVDFTYEVSRSLAACEGALLVVDAAQGIEAQTLANVYLALDNNLEILPVINKIDLPSADPERVKQEIEDVIGLDASEAVLASAKAGIGIKEILEQVVKQVPAPTGTAEDPLKALIFDSHYDPYKGVIVYVRVIDGKIRAGSKIKMMATEKVFEVIEVGSFMPRMTIVDELNIGDVGFIVAGIKHVGDTRVGDTVTDAKNPTPEPLPGYRKINPMVYCGLYPIETSDYNDLREALEKLQLNDASLSFEPESSSALGFGFRCGFLGLLHMEIIQERIEREFNLPLITTAPSVIYRIMLTNGEMLQIDNPSNYPEIGTIDYVEEPYVKAAVIVPNDYVGTVMELCQNKRGEFVNMEYLDTNRVTITYQIPLSEIVYDFFDQLKSGTKGYASFDYEISGYRQSNLVKMDILLNNEQVDALSFIVHRDRAYNRGRIICEKLRGIIPRQMFEVPIQASVGTKVVARETVKAMRKNVLAKCYGGDISRKRKLLEKQKEGKKRMKQVGSVEVPQEAFMAVLKIDE
>NZ_CP009283.1|WP_039876175.1|5596073_5597246_-|oxygen-independent-coproporphyrinogen-III-oxidase
MTAHNNGRPPEAVYIHIPFCTNKCFYCDFNSYVLKDQPVMDYLYALDREMELTVQQTPPGVIKTIFVGGGTPTVLKPDEMAYFLASVRRHFPQWDDNIEFSMEANPGTTDIEKLTVMKEGGVNRVSFGVQAFQNELLSGIGRIHNVDDVYRSLENARSAGIDNLSVDLMFGLPNQTVDMLKESIRKALELNLPHYSIYSLKVEENTLFHTLFNKNKLPLPSEEDELEMYLLLMSEMEKAGYIQYEISNFAKPGMESRHNITYWRNEDYYGLGAGAHGYVKRQRHINIKGVNPYNEASRSGLPRLDSFEITEQEAMEDFMMVGLRMRAGVSGSAFQAQFGKTLEEIFGAPLHKLLHAGLLEQAGGTYRLSKQGILFGNDVFGEFVGLLTEV
>NZ_CP009283.1|WP_047171518.1|5595489_5595981_-|N-acetyltransferase
MVRQSAPAGESKVICRNATVEDVEPLYLMIEEYAQRGIMLPRSRQALTRQIDQFVIAELDGMFVGCGSLFRLGNDLVEVRSIGLRDEGKGKGVGSMILEKLTEEARRQGIPKIMALTYAVDFFLRNGFTVVEKEIFPEKVWTDCVNCKKQHACDEIAVMKRLD
>NZ_CP009283.1|WP_052421447.1|5594680_5595403_+|hypothetical-protein
MKWKRFILIILPVMLLLAGAALFYERETGRADNCFYGDVDYVSVLQWDGVVYQEDYASPAKEQIKGKRLGEISYRKADHQCPRDEMLDGDSTLLEAGTALYEVTGYKASARLWAGDRLFIARSNPEAVTLNDLLDIDGKISAVRFISGMDGTTRLMDFTPEAAELFIKEFPQLNYIPYELLYKETKSWVGDKYWLEIELKDGSALTIVYNTLSPSFNPSAYATPELAGLIEQQRKLIYTK
>NZ_CP009283.1|WP_039876172.1|5593425_5594457_-|heat-inducible-transcriptional-repressor-HrcA
MLTERQRMILNAIVDDYISSAEPVGSRSISKRGDVGYSPATIRNEMADLEELGYLEQPHTSAGRIPSHKGYRYYVDHLVPWNSAGTAEMGTIRAFFAEKLNATEQVIQHAAMILSNMTNYTSILLGPEVFHTSLRHFQLLPLDGNNAVAIIVTSTGQVENRTVQIPPEISLSEMEKVVNLLNSKLVNVPLYKLKSQLYSELGEEMQRHISHYEELMQVLDQALESDHDQRIYLSGAANMLTQPEFKDVDKVKTILDLLEETPTLLKMLSPASGGTGIQVRIGTENKHEAFAHCSLITATYSLDGKALGSIGILGPTRMEYARVMGILGILSRDLTAMLAHWYK
>NZ_CP009283.1|WP_076418364.1|5592800_5593361_-|nucleotide-exchange-factor-GrpE
MQDPNELKDEAVNETLAADEAEAAAENTADFEEASGGGEAVKRLQELAEEAQARTLRVQADFDNFRRRTQKEKEELAQYATSKLVTELLPVLDNFERALVTAPGNAESEAFTKGINMIFRQLEGVLKSEGLAAMETVGQPFNPEYHQAIMQVESEEHEEGIVTEEVQKGYLLKDKVLRPAMVKVSM
>NZ_CP009283.1|WP_039876168.1|5590865_5592701_-|molecular-chaperone-DnaK
MSKVIGIDLGTTNSCVAVMEGGEAVVIPNPEGARTTPSVVGFKKDGERIVGETAKRQAITNPDRTIASIKRHMGTNHKESIDSKDYSAQEISAMILQKLKSDAEAYLGQTVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIVNEPTAAALAYGLEKAEDQTILVYDLGGGTFDVSILELGDGFFEVKATSGDNRLGGDDFDQVVMDFLVAEFKKEQGIDLSKDKAAVQRLKDAAEKAKKELSGVLTTTVSLPFITVVDGVPQHLEVNLTRAKFEELTAGLVERTLGPTRQALSDAGMTPADLDRIVLVGGSTRIPAVQEAIKKLTGKEPHKGVNPDEVVALGAAVQAGVLTGDVKDVVLLDVTPLSLGIETAGGVFTKMIERNTTIPTSKSQVFSTFADNQPSVEIHVLQGERQMANGNKTLGRFMLNEIPPAPRGVPQIEVTFDIDANGIVNVSATDKGTNKSQKITITSSSGLSDAEVEQMMKDAELHAEEDRKRKELVEAKNNADQLVYSTDKVIKDLGDKVDASEIEKANAAKDKVKAALETDNLEEINAATEALNEIVQQLSVKLYEQAAQEQQGAEGAPEGAKKDNVVDADYEVVDDEKNQG
>NZ_CP009283.1|WP_039876184.1|5602853_5603126_+|30S-ribosomal-protein-S20
MPNIKSAVKRVKTIEKRRALNASQKSALRTAVKTADVALTGTEVETAQAAIQAASKKLDKAVTKGLVHKNAAARKKSRLAKKLNALKAQA
>NZ_CP009283.1|WP_039876187.1|5603317_5604337_-|DNA-polymerase-III-subunit-delta
MDAKTAAKDIKQGKISPLYVLYGSEKFRMNEFAAFLEDHLIAKEDRDFAVIPFDLSETPVQAVVEEAETVPFMVERKLLLVRDASLFTAGKESAKIEHRVELLSDYIQAPADFSVIVFLVNNDKLDERKKIVKAAKAAGTVLAFNPLGAEELLRWVEKGFKDRGCAVAPGTAEALIASAGTGLQGLSAEMDKLSLFAGAGGTVDSAAVDSLVHRGTEQNVFTLVEDIANLRLDKALGTLYELLKQREEPIKIAALIARQFRIILQVKDLSALSYSQAQIASQIGVHPYAVKLAGEQARKFDSRRLRQILSGLADLDYQMKTGAIDKVLGLEMFMLRLGA
>NZ_CP009283.1|WP_052421448.1|5604715_5605960_-|hypothetical-protein
MKCTEVTEWMHRYLDHDLSPEETVEMYRHIDNCPSCAEVFDRLTMLSEQLEQLPDVKPPFSLVDSILPQLERLDSGVQGSSAEVQEEEGKVIPMTRKNIHGKAAKGTSRAASMATRTGIGAVAAAIILLFAVFNMPDSLPSADVEMSLNQAADTASSSEPLSKMATENSDTAATADGSGNASMYQMEIQATEPADAGNSGAADTAAPSAAEVAPYGAGADAPAATDNSTSAKQNAPVTRSTQAATPAPRADAREGSRNNNSASDAQIFSGDAAEESAGTGDTRAQEPLQPPAAPEAGVMGLLPALVSSHGSWSSPDGRYAAELAGQQLVIYSLPAEGQPEERIALTSLPLAGTWVSGAWSGDSLQFTYVTMQDGAEVTEVYSAPAAQATAEPSASPGTPANAGPSPASTAPANK
>NZ_CP009283.1|WP_039876188.1|5605956_5606508_-|sigma-70-family-RNA-polymerase-sigma-factor
MVEQGLIRAAQAGDRDALITLLREIEGHVYKTAFYILHNEQDALDASQEALIRVYTKINSYEEKAQFKTWVQRIVTNICIDKFRRSKPTVSIDEHEMVFQDNKHNVEREVMSGYLAEDIREAIDQLPEHHRTVIVLRYLQDFSYNEIADCLDLPLNTVKSYLFRARQQLQNRLQEYQKGGVSG
>NZ_CP009283.1|WP_039876191.1|5606780_5607020_-|hypothetical-protein
MPGNDKQRTLYRTINEEEAEFVQIISAVRGCRVTAGQLYRLQRNHNNPQLFEQGEIYVVDDDGKDNYAVLMLCNTIMYK
>NZ_CP009283.1|WP_039876193.1|5607227_5607869_-|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MKKIKVLQNLTSVGVVAVIRADNADDAFKMSAACIEGGLTNIEVTFTTPDADVAIKRLVAEYGSRAVIGAGTVLDPLTARIAILAGSEFVVSPSFEEETAKMCNLYGIPYMPGCMTLNEMKEALKLGVDVLKLFPGSAFGPDYVKAVKGPMPHVNIMPTGGVDLNNMGKWIANGCIAVGIGGNLTAPAKEGRYDQITELAAQYVAKYKEVKGL
>NZ_CP009283.1|WP_039876196.1|5608226_5609180_+|sugar-kinase
MSKQLSAVTFGEPMAMFYANEAGPLHEATSFSKALAGAESNVATGLSRLEHTTGYVTKLGEDNFGQFIAMALNKENIDTDSITYTKEAPTGMLIKSKVLTGDPKVEYFRKNSAASKLNLADFDEAYFASAGHLHVTSISSALSKTCHEFSLHAMEFMKKNGKTVSLDPNLRPTLWPDKETMVATINDLATRCDWFLPGLGEGKILTGLETPEEIAAYYLERGVSLVVIKLGPEGAYYKTAAGEEGYVDGFKVEEVVDTVGAGDGFAVGVISAMLEKLTVAEAVRRGNAIGALAVMSPGDMDGLPTRDKLESFMSAGV
>NZ_CP009283.1|WP_039876200.1|5610060_5611077_-|LacI-family-transcriptional-regulator
MKKLTIEDVAQKAGVSKSTVSQFLNKRFKYMSEATKNRIADVIEELNYQPNGLARSLKQNRTHMVGIIVANIDYSLSIQCIRAIENELQRRGIQVIICNADENSEKENTYVETLVARQVDGLIIFPTGHQSAAYTRLIEAEYPLVFMDRLVEGVTTQSLLLDNEMAVKTAVKELTRNGHEAIAILSLPLGENAITPRKERMSGYKKAMEEAGLPLNERYMCSVPRERISAALDELLNGPHPPTALVAANDLVLGEILKYANRQSVAIPGRLSVIGIDDAEFALIYNPAITTIRQPAYEMGMQAAKIMLSLIEDQDAAVPITYRFPPALQQGQSVRPPV
>NZ_CP009283.1|WP_039876204.1|5611167_5612346_-|hypothetical-protein
MKHRLSEDETKVMTAKPEWYREAGRGPFTEEGFTPQLMARIELAAERRAGTEKATSRRRIGIAGIAAVMLVGALMWPLAGGGRESGEGPQAIWNNKSGAAVQPSVPAAPSPSPAAQKRTGYYSKVNFELGGLKYVMSLPMDRDKSSAQAVDTPLGIVWSPPPPKVDYLRPGYTRNTEPYTLYLTPKGHTELSAESAQRLYTFPLYAGGAQTYFALGYLFSAGDYLVFTNGAYTVGEVKTRGPGKISVLDLKKASAGDVTAPSDLFTLNSSDYSLDHAFIAADPDRNELLLVDYKEAGNGGFIQHSKLYDITTGKSDVLPETVTTEKKKRPTKVHYGELSITTEEEYYVAHYEVNGEKRTVDISIATGEQWYYDWWYEEYGEKIDASTIKKKL
>NZ_CP009283.1|WP_039876207.1|5613117_5614107_+|LacI-family-transcriptional-regulator
MKSKKVTLTQIAKALGLSPVSVSRALADQGGISEEMKAKIVEKAAQMGYIRPRKATPPKILVLHQKPYQHDNSNFSYKVQGIEKALQQADTDYSIEFVDKEHQNSLALPYRLSKGYKFDGVIFIGRFNSDYISFIHKQIPALILYVGYSPAYDYDSVWFSFLHAGYKQCQYLIGRGHRAIGFVGNLSAYRNKEKKTGITSALEEHGLPADGALFWERDEALGSRLSGLIAEGGLPTAFICEHDFTAVELIRLLQERGIKVPEHVSILSSGNTEISALSTPPLTTMDLNIGYSCQRVVATLLSRIADPQKPAENIAVLSTFVERESVRSI

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Crispr_ID: NZ_CP009283_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009283_14

5993623-5993715

Orphan

Consensus_repeat	Method
GTAAAACTTGCTTCGGAAGCATCCGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009283_14

>merge|NZ_CP009283|14|5993623-5993715|CRISPRCasFinder
GTAAAACTTGCTTCGGAAGCATCCGCTTAGTTTTACGAAGCGGCAGCTACAGAGCACTTCTTCACAGTAAAACTCGCTTCGGAAGCATCCGCT

>NZ_CP009283|14|14|5993623-5993715|CRISPRCasFinder
GTAAAACTTGCTTCGGAAGCATCCGCT	TAGTTTTACGAAGCGGCAGCTACAGAGCACTTCTTCACA
GTAAAACTCGCTTCGGAAGCATCCGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009283.1\|WP_039876713.1\|5983657_5984728_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP009283.1\|WP_052421569.1\|6002025_6002574_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236608
NZ_CP009283.1\|WP_039876740.1\|6003957_6004827_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP009283.1\|WP_156123848.1\|6000829_6002029_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_047171232.1\|5997316_5998753_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_076418523.1\|5997052_5997226_-\|aspartyl-phosphate-phosphatase-Spo0E-family-protein	unknown	unknown	gnl\|CDD\|378175
NZ_CP009283.1\|WP_039876736.1\|5990707_5991799_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|340819
NZ_CP009283.1\|WP_039876737.1\|5996557_5996920_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009283.1\|WP_039876721.1\|5986600_5987176_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP009283.1\|WP_039876732.1\|5988892_5989732_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187564
NZ_CP009283.1\|WP_039876734.1\|5989728_5990715_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|367154
NZ_CP009283.1\|WP_039876724.1\|5987217_5987937_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133055
NZ_CP009283.1\|WP_081957492.1\|5992055_5993600_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP009283.1\|WP_081957493.1\|5993835_5994972_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|226988
NZ_CP009283.1\|WP_039876715.1\|5984807_5985854_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP009283.1\|WP_081957495.1\|6003326_6003971_-\|ABC-2-transporter-permease	unknown	unknown	gnl\|CDD\|379133
NZ_CP009283.1\|WP_047171233.1\|5998761_6000666_-\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293739
NZ_CP009283.1\|WP_039876728.1\|5987933_5988896_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187570
NZ_CP009283.1\|WP_039876719.1\|5985850_5986573_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|366154
NZ_CP009283.1\|WP_047171231.1\|5995001_5996090_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|226988

Protein	Function_ID	Function_description	E-value
NZ_CP009283.1\|WP_039876713.1\|5983657_5984728_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	4.75159e-31
NZ_CP009283.1\|WP_052421569.1\|6002025_6002574_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|236608	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional.	6.97068e-33
NZ_CP009283.1\|WP_039876740.1\|6003957_6004827_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.84297e-75
NZ_CP009283.1\|WP_076418523.1\|5997052_5997226_-\|aspartyl-phosphate-phosphatase-Spo0E-family-protein	gnl\|CDD\|378175	pfam09388, SpoOE-like, Spo0E like sporulation regulatory protein. Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure.	3.88462e-07
NZ_CP009283.1\|WP_039876736.1\|5990707_5991799_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|340819	cd03786, GTB_UDP-GlcNAc_2-Epimerase, UDP-N-acetylglucosamine 2-epimerase and similar proteins. Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family (EC 5.1.3.14) are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	7.88534e-122
NZ_CP009283.1\|WP_081957495.1\|6003326_6003971_-\|ABC-2-transporter-permease	gnl\|CDD\|379133	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.67675e-10
NZ_CP009283.1\|WP_039876721.1\|5986600_5987176_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.65533e-10
NZ_CP009283.1\|WP_039876732.1\|5988892_5989732_-\|SDR-family-oxidoreductase	gnl\|CDD\|187564	cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs. dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.47e-66
NZ_CP009283.1\|WP_039876734.1\|5989728_5990715_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|367154	pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein. This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein, mannosyl-transferase, and several putative epimerases (e.g. WbiI).	1.236e-125
NZ_CP009283.1\|WP_039876724.1\|5987217_5987937_-\|glycosyltransferase	gnl\|CDD\|133055	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	6.6746e-39
NZ_CP009283.1\|WP_081957492.1\|5992055_5993600_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	2.88524e-32
NZ_CP009283.1\|WP_081957493.1\|5993835_5994972_-\|glycosyltransferase	gnl\|CDD\|226988	COG4641, COG4641, Uncharacterized protein conserved in bacteria [Function unknown].	5.14561e-30
NZ_CP009283.1\|WP_039876715.1\|5984807_5985854_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	2.79861e-22
NZ_CP009283.1\|WP_047171233.1\|5998761_6000666_-\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293739	cd16015, LTA_synthase, Lipoteichoic acid synthase like. Lipoteichoic acid (LTA) is an important cell wall polymer found in Gram-positive bacteria. It may contain long chains of ribitol or glycerol phosphate. LTA synthase catalyzes the reaction to extend the polymer by the repeated addition of glycerolphosphate (GroP) subunits to the end of the growing chain.	4.59115e-87
NZ_CP009283.1\|WP_039876728.1\|5987933_5988896_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187570	cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs. GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.49229e-41
NZ_CP009283.1\|WP_039876719.1\|5985850_5986573_-\|glycosyltransferase	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	1.91116e-31
NZ_CP009283.1\|WP_047171231.1\|5995001_5996090_-\|glycosyltransferase	gnl\|CDD\|226988	COG4641, COG4641, Uncharacterized protein conserved in bacteria [Function unknown].	8.84264e-28

>NZ_CP009283.1|WP_081957492.1|5992055_5993600_-|glycosyltransferase-family-4-protein
MLRKTLKEVNGCSRPLARERRNTMADKATIVLFSHVSNTRSITGAEKLLLFFARELSGYFNCILVAPQDGKLTQQARRSGLNVQIIPIPLVYGMYTPYAGLEADIRKFQEGREYLELKDWLAALRPAFIISSTCVHVLPALAAKSLGIPVVWKISETITDNEYTGISVELIHRNSDEILAISHTAASCFPQEIRDSKITQLPPSWNDQELLMAAWSTLRSERRRELRIAPGELLIGYISSFINKEKGLEHFVKMAVLVSEQHPEAKYVVIGTPGDKSYYERCVRKVKLEGLTSRFKFYGYEDSLPSAYCAMDLLVVPSLIREGFGMTALEGMAFGKPVVAYDSGGLCEVLQAAGCSGLLAPAADIGALAARVNGLLAEPGLAAATGSQARERIDAVYGPAAYRARLLGLAERWQLRYCLAPPEPGGASQATPVPPAPGGGEPAARTAPPKAKARRAARLRRAKLRRGRLSRARTRARRGKRPGRKRRAGGSAHRKSSRGRRHRGGKAGRRRRSR
>NZ_CP009283.1|WP_039876736.1|5990707_5991799_-|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MKIMTILGTRPEIIRLSVIIALLDKHADRHVLVHTGQNFTASLSGVFFAELGLRAPDYVLQDKQAGLGGQMAAMFGSLEGILLKEQPDRVLLLGDTNSALCAILAERMGIPVVHMEAGNRCYDLKVPEEKNRRVIDAVSTINMPYTQQSKRHLVSEGFPSQRIVLTGNPIHEVITHYQAQISSSDILSRLELTSGQYFLVTAHRAENVDDPQSLVQIMSGLNLVAEQFGLRLICSIHPRTRSKLTEQFQLEMNPLVEFHEPFGFFDFVHLEQHALCAITDSGTVQEECCLMGVPTVTIRRTTERPETVDCGSNVVSGVEQNSILRSVRLMTSLNQEWEAPEGYLTPDVSAKVVKFLLGGNLHV
>NZ_CP009283.1|WP_039876734.1|5989728_5990715_-|NAD-dependent-epimerase/dehydratase-family-protein
MFNNKRIMVTGGTGSWGHELIRQLLPQNPKEIIVFSRSESAQVAMSREFEDNRLSFVIGDIRDKEALVAACRGVDYVFHLAALKHVPVCEDQPYEALKTNVVGTQNVIEAAIANNVEKAIYISTDKAANPSNFYGMTKAIGEKLFVYANLLGSRTRFVTVRGGNVLGTNGSVVHLFMKQIKDKGQVRITDMNMTRFFFTLRDAITLLFKASEVSLGGEIFVMTMPTCKIVDLAEVLIEASGRTDVSIIEAGIRPGEKIHEILMSDFESLTTVVYDEQYLVILPTLDMPELKAHYKSYPHVSFNSFSSENNLMDQEEIKDILIRGGFLQ
>NZ_CP009283.1|WP_039876732.1|5988892_5989732_-|SDR-family-oxidoreductase
MKLLILGGNGMAGHMLAAYFRRQGTHHVFHTTRDKSDLGGLYVDADDIAGVEKLVDIVSPHCIINAMGVLNHFAERDRVTAYHVNGFLPHRLRRAADNAGARLIHISTDCVFEGTRGGYTEEDAADGTSVYAITKSLGEVRAPGHLTIRTSIIGPEIRSGGIGLMEWFLAQKGPVSGYERVMWNGVTTLELAKAVEQMLASPVSGLIHLAHPQPLSKYELLRHMQQAFGKEDVEIIPESAHVQDRTLVSTRADVHFELPAYSVMLKELADWMNQSAMYT
>NZ_CP009283.1|WP_039876728.1|5987933_5988896_-|NAD(P)-dependent-oxidoreductase
MKARRLLITGAAGFTGAHAVRYFHAAGAEVTAVVRRPAAAGFWPEGVKQQVCDLSDRRAVAAMVAEAGPDEVLHLAGRNSVPESWRDPLLYMETNVMATLYLLEALRARPAGRILVAGSRLKYRPGTAAGPPHPYSLSKTLEELVSLAWGTLFKQPVLLAEPCNLIGPGPSTGFCTLLAQHTVRSEAAAASGAEAPPAFRLSSRHALRDFLDVRDAVRAYDYILLSGTEGTVYRIDSGTQRTLGDISAKLLVHAKAPVPMDWGPDAPGQAPEPSGAAQPDAADEAVENAAALGWKPEISLERSLQEIVDYCRSGREGRLS
>NZ_CP009283.1|WP_039876724.1|5987217_5987937_-|glycosyltransferase
MNRPKVSVIIPFYNCPYIEQALQSALSQSWQPYEIIVVDDGSYVHTDRIAPYLHKIHYLGKANGGTASALNHAILHATGDYVAWLSSDDMFYHDKINNQVLFMEQNGLLISYTNFHYINGESQLTEMNASPVFPNQLEYLRCFLHGNPINGCTVMFRRDVFGAIGLFNESLPYTHDYDLWYRAILSGYPPVMLNQSLTAYRRHSGMGTLKHYDVIMAEAAATNARYNGMLRGLIASMGG
>NZ_CP009283.1|WP_039876721.1|5986600_5987176_-|class-I-SAM-dependent-methyltransferase
MYREIQVSDFLPVLLEQLKFSDSILDVGCGTGALLERYEAAVVMGLDIHRPYLLHRKYTSPNIIPIHANASHIDKLFLPGTFSAVTLIDSLEHFSMDEGKELLRKAELIASSRVVVFTPRGFFPQEGTDHFHLQGEYFQRHWSGWEPEDFLKLGYSVTVLKGFHHAENPAFREAFGADHAPLDALLACKTV
>NZ_CP009283.1|WP_039876719.1|5985850_5986573_-|glycosyltransferase
MNQSLKVSVVIPFYNCPYVDQAVESVLAQSYPNIELIVVDDGSTLYTEKLTPYKDKILYIRKQNGGTGSALNMGIKAASGNYFAWLSADDRFYPHKIERQMQELHRTGTLFNHSAYYYINERGERASEVISVPFAGRRELIATMMTGCPVNGSTVLLDMGIFRTVGVFDESFLYTQDYELWLRILPHFGWSYVEEPLLDYRVHQGMGSVIHNEAQTREIQMVQAKHNGILAQLLRKEGGS
>NZ_CP009283.1|WP_039876715.1|5984807_5985854_-|glycosyltransferase-family-4-protein
MRLIFPVLTLSRGGAQRMLAELANRLSHIGHDVVVLMPAGGTVEYEMGCKVVHVPEATLTEHDFPYGDVIVSNYYTTVQAAQRASEQGKGIHVRLALCYEPTFLPDNNQSFASYSVTRNLMVLSRWQQEIVRINHGIKGRIVPVGVNGDFHNMHMREVPGRSLVVSAILRKPEGGFSGHREQEYLLQELATVKEHHPEVQIYLITPPGEYADSAALKAIMADSRFHTRTPSNDIELCYHYNESDIFVSSSTFDTGSLPGLEAMRCGAALATVYSGGNLEYGMHGQNCLMSYRFENRLAQDIVTLIRDKELRERLARKGESDSWRFTWEKSTQLFQAELFEIVSKQGGA
>NZ_CP009283.1|WP_039876713.1|5983657_5984728_+|glycosyltransferase-family-4-protein
MKVLFTFYVPSGGVETLNRLRCDSLQREGIQCHVLYLMQGSSQQNQNNFPVYIALKDEEIRALLEAERYDAIIVTSDYLLMERLRRLGYAGILIYESQGLGKREDAKDMIIEAVPYLRSYCNAVLIPPTDHLLELFITICPWLHRYIIPNIVDIQSFHFIPGEKPHDPVIAWVGRLESNKNWREYLQIAKEIRTYKPDLHLWMFHDPGLATEEQTQLFNEELHRLGLNDRLVVFSNIPNHVMPVYFSSIAASGGFLLSTSITEGFGYAVAEAICCTCPVLSTDSDGVRSFIVHNQSGKFYPLGNIGAAVQEGLELMNNLELRDSIRIQGRNHMVARFGSERYAQSFREMLNSFSIF
>NZ_CP009283.1|WP_081957493.1|5993835_5994972_-|glycosyltransferase
MNNHQFIMPAPPLPRTPAEEEKLRGRLTGFKTGYDEGYLRGRLAILDGRPEEPIPVRNLHILYVASGKGYPYSPLDDAVLFALQRLATQVTVSDVRQNLAELAAAQRPDLVLVLDGMELPLEQISMLRGRGIKTAIWLTDDPYYTDFTMKIVAHYDYVFTLERNCVEVYRGLGCPEVHYLPFAAHREHYRPTLGRSPIQRDVSFIGSAYWNRINFFRDIMPELMSYNTVINGIWWDRLPEAPLYGDRIEIGKWMSPQETSVTYSGSKIVINLHRAHVDEKDNNNALLIPAASPNPRTFEIAAAGTLQLSDARDDMGTFYKVGEEIDTFSSPQEMMDKIRYYLTHEEERRDMALRAFERTLKDHTYTRRLHQLLTVIYG
>NZ_CP009283.1|WP_047171231.1|5995001_5996090_-|glycosyltransferase
MKAKKRRTRPRDYRDGYQEGYRLGLCEAVKRLNSPEVEACRPFKLMYVPQGFEAIDTGITEALRLLVSELVLASPDTMLEVAAREKPGAVLVMNGLHVFPENHLEQIDEIRKMGIATAIWFADDPYFTEDTSVICLHYDHVFTHELGCVEFYRSLGAGSVHYLPLCVNPQMFYPRRTGPQHQFDIVFIGNAFRNRTALFDELAPYLKGKKVLIAGGFWERLSQFEELSPFIRSGFIPPEETANYYSGAKLVINIHRPWEGGLDNRNTFQLPSRSINPRTYEISACGTMQLTDIREDLGSYYRPGHDLETFASAEELKRKIDYYLKHEHERRKFALRGLQTTLRHHTFTARLPQLLNVLTSQM
>NZ_CP009283.1|WP_039876737.1|5996557_5996920_-|hypothetical-protein
MRGKSAFGSVGSGQMGEMRGKSAFESGESGQMGEMRGKNAFDSAGSGRMGEKRGKSAFESGKIGLMGEMRGKIAFDSAESGLMGEMRGNNAFGSGGSGLVGEKRGKSVFESKGCGLPEEN
>NZ_CP009283.1|WP_076418523.1|5997052_5997226_-|aspartyl-phosphate-phosphatase-Spo0E-family-protein
MGNDEHRDRIEQARQELNRLALEYGVQDIRVLRQSVKLDALLNEYTGCLTDKDDMPY
>NZ_CP009283.1|WP_047171232.1|5997316_5998753_-|hypothetical-protein
MKRLLKPQVLVTLAGGGLILYLLFLQPFVGVADNGDFLRMMNTVGLNYYDAAESYADRFFSFSHSQFAYDNLFRGFYPSSQILLVLVPRLLAGLVHGSYFDIRVLGAVYAVLLLAATWLTVKLGAKHSAVMGLVLGAGLLFVFYDIGYLAYFNSLFGEPVSMVFMLLTFVLGLRLAMQDNPTTRGLTLFFIAVLFLVCSKIQNAPVGLAFMLIFWRMGSLKGEGGFRKLARRFAVAVALVSVVLYVTAPKELKHINLYQTVFFGILNESPDVRGDLRDLGLPERLEVLAGTNYFQGDTAIKQDDPSLTPDFYDRISHKDVLFFYLKHPSRLIDNMEYAAQNSMSIRPYYLGSYEKSLGNPAGAVAYTYSGWSEFKNRKLPDSLWFLVLFYLVYYAGVLFHYFRAKERRERVAGELLMLLGLIGLFSFLVPILGDGRADIGKHLFMFNVSFDMMAIVILGGIVRIAAGFLGRKNGTLGN
>NZ_CP009283.1|WP_047171233.1|5998761_6000666_-|sulfatase-like-hydrolase/transferase
MYKKNTGLLPVQFYVVAGLVWMKLLLLRVLFFERIAWEWIAMDLAPVLLIMGVLTILLPLRMKTGAYWSFNVILSLLLFAASVYFNHFGSVPTYLALYELNQVFQVKESVESTIQPVDYLFFADLAIAAVYAGVRRWQQGPAYRSRSYSGGTRPASRIQLVVLLVAIIGGGSLSAYSVHAAGSITNELVQAESAGFLNYEVVALLKAQEDNGLIGTGDINETVAKVSTLEASYPYSSKPAGTVPDYFGSQKGKNVIVIQLEAFQSFPLHQTLDGQELTPVLNKLAGEGFYFPRVFQQIGPGNTSDAEFMSNTSIYPIGTLAMSTGFGDRELPSLPRLLQTKGYEAYTFHVNKVGFWNRNELYPALGFNGYYDKGDFVNDHFNSFGASDEQLYITAVKELAQLQKKGTPLYAQLVTASSHHPFKIPDSFKKITMPDTLEGTMLGDYLTAINYTDYAVGTLIEGLKQQGLWEDTVLVLYGDHFGLQPQDVQPEQVGEALGISYHPRISRFNIPLIVHVPGMTEGRTVTRVGGQLDILPTVANLLGLDLKAEGFTAFGHDLLNIDRNVIGMRYYMPSGSFFNDEIMFVPGKSFADGEAVSLQTFEPVADYSKYESDYNYILQLMKLSDEYVKLLPQR
>NZ_CP009283.1|WP_156123848.1|6000829_6002029_-|hypothetical-protein
MMDEREPKWYEQARKGPFQEEKFTASSAEQVMRRLHAEAEPSRPRTRQRLRLGIMTAVIFLVLAGGGALYLNNGPQDGVNTAGVTVPAEEQTELSDDALKKIAEQLIRKQLGRDIPFKKLEHVQNTENVQLEYREYSKAYALVGINAKTGETKHYTINAALDPEATDNTLIDEARDKLLELGYKGNFEVTGSTLYVDYGRTANKSIQVQNVITAADAAINFANGVFKAAYFDVELNEVSEEMKQTALQGLRLISGGGEEQLNRAVRIIIEGMPEEITLIYGPVENITTAVAFNYATGALLDVYDNSLSIIDTTDLKYTEEEEEQLLKMDSAKLRSAAAAIADKLYGIRLEEDYRMDKNGSRPGVVTFESRSGAPAFEVSYNLEGSIYSFIIKRDSNTLY
>NZ_CP009283.1|WP_052421569.1|6002025_6002574_-|sigma-70-family-RNA-polymerase-sigma-factor
MDEEQLRQIMSLYGNDIWNYIYYLTKNTEQAEDLTQEVFVKCYYRIGTYKGTSSLKAWLLTIARNTVFSYRKSRFFRAGLWGEVQSITPAARERQGAEPEAEQLFGTARSAEMEYMGNQQARDIWSLIMKLPDKLREVLVLDLKAGLSINEIAVLTELPPGTVKSRLHRARRKVQDKLRGLQ
>NZ_CP009283.1|WP_081957495.1|6003326_6003971_-|ABC-2-transporter-permease
MCVYNSFHLIRKDFIIVQKFILLLIPYYMIMGFTNFDNYTVFALLPAMLLLINSCTMDVQQNNQKFLVSLPVPRQQIVLAKYLAILPYSIISFAFTVLLYLVGFLVGRTAEPLAWRELMLSIATFPLLAAFFLPLHYWLGRKGTQVINLVFIMLIMINFFALKQLMDQFPGLAEWVSSGKTDSLLLPVITGLGYVLVLFCSYLISLRVFTSKDI
>NZ_CP009283.1|WP_039876740.1|6003957_6004827_-|ABC-transporter-ATP-binding-protein
MSDCIRLEHVHKSYGAFALQDITLGIKEGYITGLIGPNGAGKTTLIQMIMGMVHPDRGDVRLFGGQNKEQVPAVKERIGYVSDENIYYEQLTVKQMKKVIAPFYSRWNEDTYVKYQELFKLSPGKKIKDLSKGMKIKLSLAIALSHGADLLIMDEPTSGLDPVFRRELLDLLTEHIQDEKKSILFSTHNTTDLDRIADYIVFVNDGRVVFNEMKEALAEKYLLVKGGKELLDRDTRRLFLGIRESAHGFEGLMGNRSEGERYFKDTAICETPTLEEIMYFSVKGSDLRV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009283_9	9.1\|5071341\|26\|NZ_CP009283\|CRISPRCasFinder	5071341-5071366	26	NC_023285	Streptomyces sp. F8 plasmid pFRL5, complete sequence	118050-118075	2	0.923
NZ_CP009283_9	9.1\|5071341\|26\|NZ_CP009283\|CRISPRCasFinder	5071341-5071366	26	NC_023286	Streptomyces sp. F12 plasmid pFRL6, complete sequence	214653-214678	2	0.923
NZ_CP009283_9	9.1\|5071341\|26\|NZ_CP009283\|CRISPRCasFinder	5071341-5071366	26	NZ_CP013744	Streptomyces sp. CdTB01 plasmid unnamed, complete sequence	46145-46170	2	0.923
NZ_CP009283_3	3.1\|915676\|25\|NZ_CP009283\|CRISPRCasFinder	915676-915700	25	NZ_CP010862	Marinovum algicola DG 898 plasmid pMaD7	7619-7643	4	0.84
NZ_CP009283_9	9.1\|5071341\|26\|NZ_CP009283\|CRISPRCasFinder	5071341-5071366	26	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	194488-194513	4	0.846
NZ_CP009283_9	9.1\|5071341\|26\|NZ_CP009283\|CRISPRCasFinder	5071341-5071366	26	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	234454-234479	4	0.846
NZ_CP009283_9	9.1\|5071341\|26\|NZ_CP009283\|CRISPRCasFinder	5071341-5071366	26	NZ_CP012185	Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence	395844-395869	4	0.846
NZ_CP009283_9	9.1\|5071341\|26\|NZ_CP009283\|CRISPRCasFinder	5071341-5071366	26	NC_031267	Gordonia phage Lucky10, complete genome	12655-12680	4	0.846
NZ_CP009283_9	9.1\|5071341\|26\|NZ_CP009283\|CRISPRCasFinder	5071341-5071366	26	NZ_CP012182	Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence	651569-651594	4	0.846
NZ_CP009283_3	3.1\|915676\|25\|NZ_CP009283\|CRISPRCasFinder	915676-915700	25	CP001771	Spirosoma linguale DSM 74 plasmid pSLIN02, complete sequence	34238-34262	5	0.8
NZ_CP009283_9	9.1\|5071341\|26\|NZ_CP009283\|CRISPRCasFinder	5071341-5071366	26	NZ_CP045736	Aeromicrobium sp. MF47 plasmid p001, complete sequence	37894-37919	5	0.808
NZ_CP009283_3	3.1\|915676\|25\|NZ_CP009283\|CRISPRCasFinder	915676-915700	25	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	1063248-1063272	6	0.76
NZ_CP009283_3	3.1\|915676\|25\|NZ_CP009283\|CRISPRCasFinder	915676-915700	25	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1566707-1566731	6	0.76
NZ_CP009283_3	3.1\|915676\|25\|NZ_CP009283\|CRISPRCasFinder	915676-915700	25	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1566650-1566674	6	0.76
NZ_CP009283_3	3.1\|915676\|25\|NZ_CP009283\|CRISPRCasFinder	915676-915700	25	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	1054262-1054286	6	0.76
NZ_CP009283_3	3.1\|915676\|25\|NZ_CP009283\|CRISPRCasFinder	915676-915700	25	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	779665-779689	6	0.76
NZ_CP009283_9	9.1\|5071341\|26\|NZ_CP009283\|CRISPRCasFinder	5071341-5071366	26	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	1094009-1094034	6	0.769
NZ_CP009283_9	9.1\|5071341\|26\|NZ_CP009283\|CRISPRCasFinder	5071341-5071366	26	NZ_LR134460	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 18, complete sequence	259001-259026	6	0.769
NZ_CP009283_1	1.1\|136301\|58\|NZ_CP009283\|CRISPRCasFinder	136301-136358	58	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1583788-1583845	8	0.862
NZ_CP009283_1	1.1\|136301\|58\|NZ_CP009283\|CRISPRCasFinder	136301-136358	58	NZ_CP016544	Planococcus donghaensis strain DSM 22276 plasmid pPD76, complete sequence	7380-7437	8	0.862
NZ_CP009283_1	1.1\|136301\|58\|NZ_CP009283\|CRISPRCasFinder	136301-136358	58	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	2547776-2547833	9	0.845
NZ_CP009283_1	1.1\|136301\|58\|NZ_CP009283\|CRISPRCasFinder	136301-136358	58	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1553592-1553649	9	0.845
NZ_CP009283_1	1.1\|136301\|58\|NZ_CP009283\|CRISPRCasFinder	136301-136358	58	NZ_CP033045	Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence	484370-484427	9	0.845
NZ_CP009283_1	1.1\|136301\|58\|NZ_CP009283\|CRISPRCasFinder	136301-136358	58	NZ_CP033045	Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence	485380-485437	9	0.845
NZ_CP009283_2	2.1\|846391\|34\|NZ_CP009283\|CRISPRCasFinder	846391-846424	34	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1149455-1149488	10	0.706
NZ_CP009283_1	1.1\|136301\|58\|NZ_CP009283\|CRISPRCasFinder	136301-136358	58	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	900668-900725	11	0.81
NZ_CP009283_1	1.1\|136301\|58\|NZ_CP009283\|CRISPRCasFinder	136301-136358	58	CP031730	Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence	312640-312697	11	0.81
NZ_CP009283_1	1.1\|136301\|58\|NZ_CP009283\|CRISPRCasFinder	136301-136358	58	CP041516	Bacillus aryabhattai strain KNU10 plasmid unnamed, complete sequence	16631-16688	13	0.776
NZ_CP009283_1	1.1\|136301\|58\|NZ_CP009283\|CRISPRCasFinder	136301-136358	58	NC_004604	Bacillus megaterium QM B1551 plasmid pBM400, complete sequence	47657-47714	13	0.776
NZ_CP009283_1	1.1\|136301\|58\|NZ_CP009283\|CRISPRCasFinder	136301-136358	58	NZ_CP041068	Bacillus megaterium strain KNU-01 plasmid pKNU_01_4, complete sequence	37432-37489	13	0.776
NZ_CP009283_1	1.1\|136301\|58\|NZ_CP009283\|CRISPRCasFinder	136301-136358	58	NZ_CP024037	Bacillus aryabhattai strain K13 plasmid unnamed2	9191-9248	14	0.759
NZ_CP009283_1	1.1\|136301\|58\|NZ_CP009283\|CRISPRCasFinder	136301-136358	58	NZ_CP026740	Bacillus megaterium strain YC4-R4 plasmid unnamed4	69536-69593	14	0.759
NZ_CP009283_1	1.1\|136301\|58\|NZ_CP009283\|CRISPRCasFinder	136301-136358	58	NC_017139	Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence	90-147	14	0.759
NZ_CP009283_1	1.1\|136301\|58\|NZ_CP009283\|CRISPRCasFinder	136301-136358	58	NZ_CP010587	Bacillus megaterium Q3 plasmid p1, complete sequence	2068-2125	14	0.759
NZ_CP009283_1	1.1\|136301\|58\|NZ_CP009283\|CRISPRCasFinder	136301-136358	58	NZ_CP023319	Bacillus megaterium strain A plasmid p2, complete sequence	553-610	14	0.759

1. spacer 9.1|5071341|26|NZ_CP009283|CRISPRCasFinder matches to NC_023285 (Streptomyces sp. F8 plasmid pFRL5, complete sequence) position: , mismatch: 2, identity: 0.923

tcggcaccggcggccaatccgcctgc	CRISPR spacer
tcggcaccggcggccactccgccggc	Protospacer
**************** ****** **

2. spacer 9.1|5071341|26|NZ_CP009283|CRISPRCasFinder matches to NC_023286 (Streptomyces sp. F12 plasmid pFRL6, complete sequence) position: , mismatch: 2, identity: 0.923

tcggcaccggcggccaatccgcctgc	CRISPR spacer
tcggcaccggcggccactccgccggc	Protospacer
**************** ****** **

3. spacer 9.1|5071341|26|NZ_CP009283|CRISPRCasFinder matches to NZ_CP013744 (Streptomyces sp. CdTB01 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.923

tcggcaccggcggccaatccgcctgc	CRISPR spacer
tcggcaccggcggccactccgccggc	Protospacer
**************** ****** **

4. spacer 3.1|915676|25|NZ_CP009283|CRISPRCasFinder matches to NZ_CP010862 (Marinovum algicola DG 898 plasmid pMaD7) position: , mismatch: 4, identity: 0.84

tggaactgggccgggcggctggaat	CRISPR spacer
tggatctgggccgagcggctggagc	Protospacer
**** ********.*********..

5. spacer 9.1|5071341|26|NZ_CP009283|CRISPRCasFinder matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 4, identity: 0.846

tcggcaccggcggccaatccgcctgc	CRISPR spacer
ccggcgccggcggccaatccgcccgt	Protospacer
.****.*****************.*.

6. spacer 9.1|5071341|26|NZ_CP009283|CRISPRCasFinder matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 4, identity: 0.846

tcggcaccggcggccaatccgcctgc	CRISPR spacer
ccggcgccggcggccaatccgcccgt	Protospacer
.****.*****************.*.

7. spacer 9.1|5071341|26|NZ_CP009283|CRISPRCasFinder matches to NZ_CP012185 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence) position: , mismatch: 4, identity: 0.846

tcggcaccggcggccaatccgcctgc	CRISPR spacer
tcggcaccggcggccactcagccggg	Protospacer
**************** ** *** *

8. spacer 9.1|5071341|26|NZ_CP009283|CRISPRCasFinder matches to NC_031267 (Gordonia phage Lucky10, complete genome) position: , mismatch: 4, identity: 0.846

tcggcaccggcggccaatccgcctgc	CRISPR spacer
tcggcaccggccgccgatccgccgac	Protospacer
*********** ***.******* .*

9. spacer 9.1|5071341|26|NZ_CP009283|CRISPRCasFinder matches to NZ_CP012182 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence) position: , mismatch: 4, identity: 0.846

tcggcaccggcggccaatccgcctgc	CRISPR spacer
tcggcaccggcggccactcagccggg	Protospacer
**************** ** *** *

10. spacer 3.1|915676|25|NZ_CP009283|CRISPRCasFinder matches to CP001771 (Spirosoma linguale DSM 74 plasmid pSLIN02, complete sequence) position: , mismatch: 5, identity: 0.8

tggaactgggccgggcggctggaat	CRISPR spacer
tcgaactgggccgggcggctgtgga	Protospacer
* ******************* ..

11. spacer 9.1|5071341|26|NZ_CP009283|CRISPRCasFinder matches to NZ_CP045736 (Aeromicrobium sp. MF47 plasmid p001, complete sequence) position: , mismatch: 5, identity: 0.808

tcggcaccggcggccaatccgcctgc	CRISPR spacer
tcggcaccggcgcccagtccgccgag	Protospacer
************ ***.****** .

12. spacer 3.1|915676|25|NZ_CP009283|CRISPRCasFinder matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.76

tggaactgggccgggcggctggaat	CRISPR spacer
tggaactgggccgggcggcccacgc	Protospacer
*******************. . ..

13. spacer 3.1|915676|25|NZ_CP009283|CRISPRCasFinder matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.76

tggaactgggccgggcggctggaat	CRISPR spacer
tggaactgggccgggcggcccacgc	Protospacer
*******************. . ..

14. spacer 3.1|915676|25|NZ_CP009283|CRISPRCasFinder matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.76

tggaactgggccgggcggctggaat	CRISPR spacer
tggaactgggccgggcggcccacgc	Protospacer
*******************. . ..

15. spacer 3.1|915676|25|NZ_CP009283|CRISPRCasFinder matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.76

tggaactgggccgggcggctggaat	CRISPR spacer
tggaactgggccgggcggcccacgc	Protospacer
*******************. . ..

16. spacer 3.1|915676|25|NZ_CP009283|CRISPRCasFinder matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.76

tggaactgggccgggcggctggaat	CRISPR spacer
tggaactgggccgggcggcccacgc	Protospacer
*******************. . ..

17. spacer 9.1|5071341|26|NZ_CP009283|CRISPRCasFinder matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.769

tcggcaccggcggccaatccgcctgc	CRISPR spacer
atctcgccggcggccaatccgcctgg	Protospacer
 .  *.*******************

18. spacer 9.1|5071341|26|NZ_CP009283|CRISPRCasFinder matches to NZ_LR134460 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 18, complete sequence) position: , mismatch: 6, identity: 0.769

tcggcaccggcggccaatccgcctgc	CRISPR spacer
acggcaccggcggccagtccgcggcg	Protospacer
 ***************.*****

19. spacer 1.1|136301|58|NZ_CP009283|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.862

---gctaccatattcccggaggcttagctcagctgggagagcatctgccttacaagcaga	CRISPR spacer
cgggtcacca---tcatggaggcttagctcagctgggagagcatctgccttacaagcaga	Protospacer
   *..****   ** .*******************************************

20. spacer 1.1|136301|58|NZ_CP009283|CRISPRCasFinder matches to NZ_CP016544 (Planococcus donghaensis strain DSM 22276 plasmid pPD76, complete sequence) position: , mismatch: 8, identity: 0.862

---gctaccatattcccggaggcttagctcagctgggagagcatctgccttacaagcaga	CRISPR spacer
ggggtcaccatttt---ggaggattagctcagctgggagagcatctgccttacaagcaga	Protospacer
   *..***** **   ***** *************************************

21. spacer 1.1|136301|58|NZ_CP009283|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.845

---gctaccatattcccggaggcttagctcagctgggagagcatctgccttacaagcaga	CRISPR spacer
cgggtcacca---ttatggaggcttagctcagctgggagagcatctgccttacaagcaga	Protospacer
   *..****   *. .*******************************************

22. spacer 1.1|136301|58|NZ_CP009283|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.845

---gctaccatattcccggaggcttagctcagctgggagagcatctgccttacaagcaga	CRISPR spacer
cgggtcacca---ttatggaggcttagctcagctgggagagcatctgccttacaagcaga	Protospacer
   *..****   *. .*******************************************

23. spacer 1.1|136301|58|NZ_CP009283|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.845

----gctaccatattcccggaggcttagctcagctgggagagcatctgccttacaagcag	CRISPR spacer
aggggtcaccatat----ggaggattagctcagctgggagagcatctgccttacaagcag	Protospacer
    *..*******    ***** ************************************

24. spacer 1.1|136301|58|NZ_CP009283|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.845

---gctaccatattcccggaggcttagctcagctgggagagcatctgccttacaagcaga	CRISPR spacer
ggggtcaccaaaat---ggaggattagctcagctgggagagcatctgccttacaagcaga	Protospacer
   *..**** * *   ***** *************************************

25. spacer 2.1|846391|34|NZ_CP009283|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.706

aagcgtatgcttccggagtgagtttgtacgaggt	CRISPR spacer
gagcgtatgcttccgaagtaagtttttgtttgtg	Protospacer
.**************.***.***** *..  *

26. spacer 1.1|136301|58|NZ_CP009283|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 11, identity: 0.81

-----gctaccatattcccggaggcttagctcagctgggagagcatctgccttacaagca	CRISPR spacer
aagtcgcttaca-----acggaggcttagctcagctgggagagcatctgccttacaagca	Protospacer
     ***  **      ******************************************

27. spacer 1.1|136301|58|NZ_CP009283|CRISPRCasFinder matches to CP031730 (Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.81

gctaccatattcccggaggcttagctcagctgggagagcatctgccttacaagcagag	CRISPR spacer
acacctgtttctatggaggattagctcagctgggagagcatctgccttacaagcagag	Protospacer
.*  *..* *.. .***** **************************************

28. spacer 1.1|136301|58|NZ_CP009283|CRISPRCasFinder matches to CP041516 (Bacillus aryabhattai strain KNU10 plasmid unnamed, complete sequence) position: , mismatch: 13, identity: 0.776

gctaccatattcccggaggcttagctcagctgggagagcatctgccttacaagcagag	CRISPR spacer
atatagatttttttggaggattagctcagctgggagagcacctgccttacaagcaggg	Protospacer
..    ** **...***** ********************.***************.*

29. spacer 1.1|136301|58|NZ_CP009283|CRISPRCasFinder matches to NC_004604 (Bacillus megaterium QM B1551 plasmid pBM400, complete sequence) position: , mismatch: 13, identity: 0.776

gctaccatattcccggaggcttagctcagctgggagagcatctgccttacaagcagag	CRISPR spacer
atatagatttttttggaggattagctcagctgggagagcacctgccttacaagcaggg	Protospacer
..    ** **...***** ********************.***************.*

30. spacer 1.1|136301|58|NZ_CP009283|CRISPRCasFinder matches to NZ_CP041068 (Bacillus megaterium strain KNU-01 plasmid pKNU_01_4, complete sequence) position: , mismatch: 13, identity: 0.776

gctaccatattcccggaggcttagctcagctgggagagcatctgccttacaagcagag	CRISPR spacer
atatagatttttttggaggattagctcagctgggagagcacctgccttacaagcaggg	Protospacer
..    ** **...***** ********************.***************.*

31. spacer 1.1|136301|58|NZ_CP009283|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 14, identity: 0.759

gctaccatattcccggaggcttagctcagctgggagagcatctgccttacaagcagag	CRISPR spacer
tatatagattctttggaggattagctcagctgggagagcacctgccttacaagcaggg	Protospacer
  **. .  *....***** ********************.***************.*

32. spacer 1.1|136301|58|NZ_CP009283|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 14, identity: 0.759

gctaccatattcccggaggcttagctcagctgggagagcatctgccttacaagcagag	CRISPR spacer
tatatagattctttggaggattagctcagctgggagagcacctgccttacaagcaggg	Protospacer
  **. .  *....***** ********************.***************.*

33. spacer 1.1|136301|58|NZ_CP009283|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 14, identity: 0.759

gctaccatattcccggaggcttagctcagctgggagagcatctgccttacaagcagag	CRISPR spacer
tatatagattctttggaggattagctcagctgggagagcacctgccttacaagcaggg	Protospacer
  **. .  *....***** ********************.***************.*

34. spacer 1.1|136301|58|NZ_CP009283|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 14, identity: 0.759

gctaccatattcccggaggcttagctcagctgggagagcatctgccttacaagcagag	CRISPR spacer
tatatagattctttggaggattagctcagctgggagagcacctgccttacaagcaggg	Protospacer
  **. .  *....***** ********************.***************.*

35. spacer 1.1|136301|58|NZ_CP009283|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 14, identity: 0.759

gctaccatattcccggaggcttagctcagctgggagagcatctgccttacaagcagag	CRISPR spacer
tatatagattctttggaggattagctcagctgggagagcacctgccttacaagcaggg	Protospacer
  **. .  *....***** ********************.***************.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

343194 : 352357

Caulobacter_phage(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039869224.1\|343194_344223_+	agmatine deiminase family protein	M1I5R4	Acanthocystis_turfacea_Chlorella_virus	2.3e-66	38.4
WP_039869227.1\|344249_345125_+	N-carbamoylputrescine amidase	M1GUG4	Paramecium_bursaria_Chlorella_virus	3.9e-75	48.8
WP_039869230.1\|345355_346171_+	basic amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_039869233.1\|346281_346929_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_039878104.1\|346945_347668_+	amino acid ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.3e-23	30.3
WP_039869236.1\|347823_348270_+	tellurite resistance TerB family protein	A0A1Y0T181	Sinorhizobium_phage	6.8e-07	29.3
WP_039869239.1\|348392_348989_+	TerD family protein	K4JRX3	Caulobacter_phage	5.8e-22	33.7
WP_039869242.1\|349033_349609_+	TerD family protein	A0A2L1IWC0	Streptomyces_phage	4.8e-05	35.9
WP_039869245.1\|349631_350213_+	TerD family protein	K4JRX3	Caulobacter_phage	1.3e-26	37.2
WP_039869247.1\|350336_351584_+	tellurium resistance protein TerA	NA	NA	NA	NA
WP_039869249.1\|351613_352357_+	TerC family protein	A0A068EP98	Bacillus_phage	8.2e-58	52.1

DBSCAN-SWA_2

652165 : 663266

Mollivirus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039869623.1\|652165_653461_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	3.3e-22	27.6
WP_039869626.1\|653499_654390_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	3.5e-39	32.5
WP_019913657.1\|654452_654698_+	phosphoribosylformylglycinamidine synthase subunit PurS	A0A0E3FJ99	Synechococcus_phage	2.2e-07	36.7
WP_039869631.1\|654703_655393_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_039869632.1\|655370_657617_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.1e-164	41.7
WP_039878185.1\|657601_659098_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	8.8e-51	33.3
WP_039869633.1\|659856_660897_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	4.4e-65	43.1
WP_039869636.1\|660896_661511_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.6e-25	37.0
WP_039869639.1\|661718_663266_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	9.1e-75	50.3

DBSCAN-SWA_3

1444754 : 1489157

Brevibacillus_phage(42.86%)

plate,terminase,integrase,portal,tail

attL 1438858:1438872|attR 1467121:1467135

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1438858:1438872	attL	NA	NA	NA	NA
WP_039870640.1\|1444754_1446881_+	EAL domain-containing protein	A0A127AWB9	Bacillus_phage	2.7e-05	24.7
WP_039870642.1\|1447125_1448352_-\|integrase	site-specific integrase	A0A0K2CZ62	Paenibacillus_phage	2.6e-56	37.3
WP_039870644.1\|1448425_1448893_-	ImmA/IrrE family metallo-endopeptidase	R9TQI1	Paenibacillus_phage	1.0e-34	50.0
WP_039870645.1\|1448915_1449290_-	helix-turn-helix transcriptional regulator	A0A1C8E9A4	Bacillus_phage	3.3e-07	32.0
WP_039870647.1\|1449515_1449701_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_039870648.1\|1449713_1449998_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_156123787.1\|1449994_1450156_+	hypothetical protein	NA	NA	NA	NA
WP_039870649.1\|1450152_1450347_+	hypothetical protein	NA	NA	NA	NA
WP_156123788.1\|1450681_1450903_+	hypothetical protein	NA	NA	NA	NA
WP_039870657.1\|1450970_1451867_+	hypothetical protein	A0A1S7FYZ0	Listeria_phage	2.3e-91	57.9
WP_052421195.1\|1451883_1452270_+	hypothetical protein	NA	NA	NA	NA
WP_039870660.1\|1452266_1453463_+	DUF2800 domain-containing protein	S5MUB5	Brevibacillus_phage	3.1e-115	54.8
WP_039870661.1\|1453469_1454063_+	DUF2815 family protein	S5MC21	Brevibacillus_phage	3.1e-31	43.4
WP_039870664.1\|1454460_1456425_+	XRE family transcriptional regulator	S5M5X4	Brevibacillus_phage	8.2e-198	54.1
WP_039870666.1\|1456517_1457276_+	phosphoadenosine phosphosulfate reductase family protein	NA	NA	NA	NA
WP_039870670.1\|1457984_1460339_+	virulence protein E	S5M5Y2	Brevibacillus_phage	1.7e-274	58.2
WP_039870672.1\|1460622_1460904_+	VRR-NUC domain-containing protein	A0A2K5B272	Erysipelothrix_phage	4.5e-17	50.0
WP_039870674.1\|1460900_1462286_+	DEAD/DEAH box helicase	S5MA26	Brevibacillus_phage	7.4e-169	63.5
WP_039870676.1\|1462282_1462744_+	sigma-70 family RNA polymerase sigma factor	R9TMH4	Paenibacillus_phage	3.2e-12	33.3
WP_039870678.1\|1462843_1463482_-	hypothetical protein	NA	NA	NA	NA
WP_039870679.1\|1463573_1464068_+	hypothetical protein	A0A090DCM3	Clostridium_phage	6.1e-49	59.6
WP_039870681.1\|1464060_1465467_+\|terminase	phage terminase large subunit	A0A090EUA8	Clostridium_phage	3.5e-182	67.8
WP_047171046.1\|1465486_1466938_+\|portal	phage portal protein	A0A0K2CNK4	Brevibacillus_phage	7.5e-140	53.5
WP_052421197.1\|1466950_1468756_+	hypothetical protein	X5JAI9	Clostridium_phage	9.5e-84	47.2
1467121:1467135	attR	NA	NA	NA	NA
WP_039870684.1\|1469016_1469643_+	hypothetical protein	S5MUG0	Brevibacillus_phage	1.0e-45	55.3
WP_047171047.1\|1469663_1469996_+	hypothetical protein	S5M669	Brevibacillus_phage	5.3e-33	68.2
WP_039870685.1\|1470018_1471038_+	hypothetical protein	S5MA55	Brevibacillus_phage	5.3e-132	70.2
WP_039870686.1\|1471075_1471357_+	hypothetical protein	S5MC61	Brevibacillus_phage	3.8e-08	40.0
WP_039870687.1\|1471340_1471709_+	hypothetical protein	NA	NA	NA	NA
WP_039870688.1\|1471710_1472085_+	hypothetical protein	S5M673	Brevibacillus_phage	2.3e-16	42.9
WP_039870691.1\|1472081_1472489_+	HK97 gp10 family phage protein	A0A0A7RVN8	Clostridium_phage	5.7e-21	42.9
WP_052421198.1\|1472491_1472911_+	hypothetical protein	A0A0A7RTI2	Clostridium_phage	7.0e-22	39.0
WP_039870694.1\|1472907_1473126_+	hypothetical protein	NA	NA	NA	NA
WP_039870696.1\|1473129_1474446_+	phage-like element PBSX protein XkdK	A0A0K2CNL4	Brevibacillus_phage	2.3e-119	52.2
WP_039870698.1\|1474447_1474912_+\|tail	phage tail tube protein	A0A0K2CNG3	Brevibacillus_phage	6.5e-53	64.9
WP_039870700.1\|1474938_1475361_+\|portal	phage portal protein	Q708L8	Streptococcus_phage	7.3e-19	46.2
WP_039870702.1\|1475593_1475986_+	hypothetical protein	NA	NA	NA	NA
WP_052421199.1\|1476042_1478814_+	DUF4200 domain-containing protein	A0A0K2CP22	Brevibacillus_phage	1.7e-76	35.4
WP_039870704.1\|1478813_1479512_+	LysM peptidoglycan-binding domain-containing protein	A0A0K2CNM3	Brevibacillus_phage	3.5e-50	49.3
WP_039870706.1\|1479516_1480482_+	hypothetical protein	S6B1K2	Thermus_phage	8.1e-74	45.4
WP_039870709.1\|1480484_1480820_+	DUF2577 domain-containing protein	A0A0A7RTJ2	Clostridium_phage	3.4e-19	44.0
WP_039870711.1\|1480816_1481230_+	DUF2634 domain-containing protein	A0A0A7RTU4	Clostridium_phage	3.8e-20	41.8
WP_039870712.1\|1481222_1482287_+\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	4.6e-86	49.0
WP_039870713.1\|1482283_1482832_+	YmfQ family protein	NA	NA	NA	NA
WP_052421200.1\|1482851_1486658_+	hypothetical protein	S6B1J7	Thermus_phage	3.1e-23	35.3
WP_052421201.1\|1486696_1487248_+	hypothetical protein	S6C455	Thermus_phage	3.6e-18	52.3
WP_039870715.1\|1487440_1487740_+	hypothetical protein	NA	NA	NA	NA
WP_156123789.1\|1487926_1488328_+	hypothetical protein	NA	NA	NA	NA
WP_039870720.1\|1488299_1489157_+	hypothetical protein	A0A127AWA8	Bacillus_phage	2.7e-44	61.4

DBSCAN-SWA_4

2408501 : 2418774

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039871787.1\|2408501_2410295_+	HAMP domain-containing protein	W8CYF6	Bacillus_phage	1.7e-37	32.3
WP_039871788.1\|2410486_2411215_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.0e-36	35.2
WP_076418481.1\|2411396_2412176_+	phosphate ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.7e-17	33.5
WP_039871791.1\|2412244_2412904_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_039871793.1\|2413120_2415781_+	DNA polymerase I	A0A218MKQ4	uncultured_virus	4.1e-59	29.7
WP_047171091.1\|2415832_2416705_+	DNA-formamidopyrimidine glycosylase	A0A127AWE5	Bacillus_phage	7.2e-21	29.9
WP_039871794.1\|2416858_2417608_+	membrane protein	NA	NA	NA	NA
WP_039871795.1\|2417617_2418214_+	dephospho-CoA kinase	NA	NA	NA	NA
WP_039871798.1\|2418210_2418774_+	lytic transglycosylase domain-containing protein	A0A0H3V0Q1	Geobacillus_virus	3.1e-17	39.6

DBSCAN-SWA_5

4822804 : 4830809

Staphylococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047171176.1\|4822804_4824010_-	D-alanyl-D-alanine carboxypeptidase	A0A1P8VVG5	Erythrobacter_phage	7.4e-08	34.7
WP_039875042.1\|4824167_4824659_-	sporulation protein YtfJ	NA	NA	NA	NA
WP_039875045.1\|4824775_4825462_-	DUF2953 domain-containing protein	NA	NA	NA	NA
WP_039875047.1\|4825660_4826260_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.7e-16	34.1
WP_039875049.1\|4826228_4827020_-	segregation and condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	5.4e-07	34.5
WP_039879072.1\|4827180_4827648_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	6.1e-43	57.0
WP_047171177.1\|4827696_4828950_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.9e-117	53.4
WP_039875051.1\|4828970_4829636_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.2e-36	41.0
WP_039875053.1\|4829708_4830809_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.3e-55	36.4

DBSCAN-SWA_6

6542840 : 6574313

Clostridium_phage(29.41%)

plate,integrase,holin,portal,transposase,tail

attL 6527791:6527811|attR 6546064:6546084

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
6527791:6527811	attL	NA	NA	NA	NA
WP_039877340.1\|6542840_6545042_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_039877341.1\|6545045_6545870_-\|transposase	heteromeric transposase endonuclease subunit TnsA	NA	NA	NA	NA
WP_039877342.1\|6546134_6547967_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1HVL7	Paramecium_bursaria_Chlorella_virus	4.3e-108	40.0
6546064:6546084	attR	NA	NA	NA	NA
WP_156123855.1\|6548283_6548421_-	hypothetical protein	NA	NA	NA	NA
WP_039877344.1\|6548577_6549918_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_039877345.1\|6550085_6551534_-	hypothetical protein	NA	NA	NA	NA
WP_039877346.1\|6551526_6552357_-	TIGR00159 family protein	NA	NA	NA	NA
WP_039877347.1\|6552566_6553181_-	anti-sigma W factor	NA	NA	NA	NA
WP_039877348.1\|6553301_6553868_-	RNA polymerase sigma factor SigW	NA	NA	NA	NA
WP_039877349.1\|6554800_6557593_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
WP_039879387.1\|6557946_6558210_-\|holin	holin	NA	NA	NA	NA
WP_039877350.1\|6558283_6558976_-	hypothetical protein	A0A127AWA8	Bacillus_phage	2.8e-44	58.0
WP_144027129.1\|6558947_6559178_-	hypothetical protein	NA	NA	NA	NA
WP_039877352.1\|6559326_6559524_-	hypothetical protein	NA	NA	NA	NA
WP_039877353.1\|6559525_6559825_-	hypothetical protein	NA	NA	NA	NA
WP_039877354.1\|6559879_6561688_-	hypothetical protein	E3SP37	Cyanophage	1.8e-05	65.8
WP_039877355.1\|6561699_6562311_-	YmfQ family protein	S6BFJ0	Thermus_phage	1.6e-51	54.5
WP_039877356.1\|6562661_6563684_-	DUF2793 domain-containing protein	A0A0S0MV96	Pseudomonas_phage	5.5e-12	35.8
WP_039877357.1\|6563685_6564099_-	hypothetical protein	A0A0A7S1G0	Clostridium_phage	8.1e-31	51.2
WP_039877358.1\|6564102_6565161_-\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	4.3e-92	51.4
WP_039877359.1\|6565153_6565585_-	DUF2634 domain-containing protein	A0A0A7RTU4	Clostridium_phage	3.9e-20	39.0
WP_039877360.1\|6565581_6565875_-	DUF2577 domain-containing protein	A0A0A7RTJ2	Clostridium_phage	2.1e-17	45.2
WP_039877361.1\|6565881_6566844_-	hypothetical protein	S5MNC9	Brevibacillus_phage	1.9e-86	48.1
WP_039877362.1\|6566855_6567623_-	LysM peptidoglycan-binding domain-containing protein	A0A0K2CNM3	Brevibacillus_phage	2.7e-43	40.4
WP_039877363.1\|6567624_6569484_-	hypothetical protein	A0A0K2CP22	Brevibacillus_phage	3.6e-54	35.1
WP_076418473.1\|6569497_6569677_-	hypothetical protein	NA	NA	NA	NA
WP_039877364.1\|6569676_6570099_-\|portal	phage portal protein	A0A0A8WJT4	Clostridium_phage	2.6e-24	44.5
WP_039877365.1\|6570208_6570679_-\|tail	phage tail tube protein	A0A0K2CNG3	Brevibacillus_phage	4.4e-49	60.9
WP_039877366.1\|6570680_6572003_-	phage-like element PBSX protein XkdK	A0A0A7RTT5	Clostridium_phage	1.1e-108	47.8
WP_156123856.1\|6572002_6572179_-	hypothetical protein	NA	NA	NA	NA
WP_039877367.1\|6572175_6572601_-	hypothetical protein	NA	NA	NA	NA
WP_047171257.1\|6573041_6573554_-	transcriptional regulator	A0A0C5AN03	Paenibacillus_phage	1.1e-40	61.9
WP_039877368.1\|6573848_6574313_+	helix-turn-helix domain-containing protein	S6C481	Thermus_phage	2.1e-19	40.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009283

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection