CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009284	Paenibacillus sp. FSL R7-0331, complete genome	16 crisprs	WYL,csa3,DEDDh,cas14j,cas3,DinG	3	4	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009284_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009284_1

69942-70032

Orphan

Consensus_repeat	Method
AGAAGCGTCAGCTTCACAAAACTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009284_1

>merge|NZ_CP009284|1|69942-70032|CRISPRCasFinder
AGAAGCGTCAGCTTCACAAAACTTAAGCATATGCTTTCGAAGCAAGTTTTGCTGCGGAGTAGAACAAAGAAGCGTCAGCTTCACAAAACTT

>NZ_CP009284|1|1|69942-70032|CRISPRCasFinder
AGAAGCGTCAGCTTCACAAAACTT	AAGCATATGCTTTCGAAGCAAGTTTTGCTGCGGAGTAGAACAA
AGAAGCGTCAGCTTCACAAAACTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009284.1\|WP_042171878.1\|65040_65916_+\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|238806
NZ_CP009284.1\|WP_042171890.1\|73121_73976_+\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|238380
NZ_CP009284.1\|WP_042171877.1\|63434_65051_+\|L-aspartate-oxidase	unknown	unknown	gnl\|CDD\|223108
NZ_CP009284.1\|WP_042171874.1\|59492_60032_+\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
NZ_CP009284.1\|WP_042171883.1\|68762_69701_+\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|273463
NZ_CP009284.1\|WP_042171881.1\|66727_67612_+\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|234643
NZ_CP009284.1\|WP_042171902.1\|77121_78636_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP009284.1\|WP_042171897.1\|75173_76187_+\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NZ_CP009284.1\|WP_042171873.1\|58004_59447_+\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|274129
NZ_CP009284.1\|WP_042171893.1\|74399_74951_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|238269
NZ_CP009284.1\|WP_042171892.1\|74027_74390_+\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|376737
NZ_CP009284.1\|WP_042171900.1\|76505_76985_+\|transcription-elongation-factor-GreA	unknown	unknown	gnl\|CDD\|234693
NZ_CP009284.1\|WP_042171879.1\|65912_66680_+\|type-III-pantothenate-kinase	unknown	unknown	gnl\|CDD\|237347
NZ_CP009284.1\|WP_042171884.1\|70040_71669_+\|anthranilate-synthase-component-I-family-protein	unknown	unknown	gnl\|CDD\|223225
NZ_CP009284.1\|WP_081947420.1\|67621_68566_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234605
NZ_CP009284.1\|WP_042171876.1\|62456_63395_+\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|376787
NZ_CP009284.1\|WP_042171888.1\|72243_73125_+\|aminodeoxychorismate-lyase	unknown	unknown	gnl\|CDD\|181067
NZ_CP009284.1\|WP_042171886.1\|71665_72247_+\|aminodeoxychorismate/anthranilate-synthase-component-II	unknown	unknown	gnl\|CDD\|235552
NZ_CP009284.1\|WP_042171875.1\|60142_62197_+\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	unknown	unknown	gnl\|CDD\|273520
NZ_CP009284.1\|WP_042171895.1\|74902_75112_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045

Protein	Function_ID	Function_description	E-value
NZ_CP009284.1\|WP_042171878.1\|65040_65916_+\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|238806	cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.	2.55947e-152
NZ_CP009284.1\|WP_042171890.1\|73121_73976_+\|dihydropteroate-synthase	gnl\|CDD\|238380	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.	4.54962e-116
NZ_CP009284.1\|WP_042171877.1\|63434_65051_+\|L-aspartate-oxidase	gnl\|CDD\|223108	COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].	0
NZ_CP009284.1\|WP_042171874.1\|59492_60032_+\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	3.70304e-97
NZ_CP009284.1\|WP_042171883.1\|68762_69701_+\|cysteine-synthase-A	gnl\|CDD\|273463	TIGR01136, Cysteine_synthase, cysteine synthase. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff. [Amino acid biosynthesis, Serine family].	2.59418e-167
NZ_CP009284.1\|WP_042171881.1\|66727_67612_+\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|234643	PRK00114, hslO, Hsp33 family molecular chaperone HslO.	2.70553e-132
NZ_CP009284.1\|WP_042171902.1\|77121_78636_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP009284.1\|WP_042171897.1\|75173_76187_+\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	8.3718e-152
NZ_CP009284.1\|WP_042171873.1\|58004_59447_+\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|274129	TIGR02432, tRNAIle-lysidine_synthase, tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). [Protein synthesis, tRNA and rRNA base modification].	6.68802e-72
NZ_CP009284.1\|WP_042171893.1\|74399_74951_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|238269	cd00483, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is HPPK which catalyzes pyrophosphoryl transfer from ATP to 6-hydroxymethyl-7,8-dihydropterin (HP). The functional enzyme is a monomer. Mammals lack many of the enzymes in the folate pathway including, HPPK.	2.53193e-70
NZ_CP009284.1\|WP_042171892.1\|74027_74390_+\|dihydroneopterin-aldolase	gnl\|CDD\|376737	pfam02152, FolB, Dihydroneopterin aldolase. This enzyme EC:4.1.2.25 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate.	1.12998e-47
NZ_CP009284.1\|WP_042171900.1\|76505_76985_+\|transcription-elongation-factor-GreA	gnl\|CDD\|234693	PRK00226, greA, transcription elongation factor GreA; Reviewed.	4.67079e-69
NZ_CP009284.1\|WP_042171879.1\|65912_66680_+\|type-III-pantothenate-kinase	gnl\|CDD\|237347	PRK13318, PRK13318, type III pantothenate kinase.	1.94786e-141
NZ_CP009284.1\|WP_042171884.1\|70040_71669_+\|anthranilate-synthase-component-I-family-protein	gnl\|CDD\|223225	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism].	7.0901e-167
NZ_CP009284.1\|WP_081947420.1\|67621_68566_+\|hypothetical-protein	gnl\|CDD\|234605	PRK00059, prsA, peptidylprolyl isomerase; Provisional.	2.0116e-24
NZ_CP009284.1\|WP_042171876.1\|62456_63395_+\|quinolinate-synthase-NadA	gnl\|CDD\|376787	pfam02445, NadA, Quinolinate synthetase A protein. Quinolinate synthetase catalyzes the second step of the de novo biosynthetic pathway of pyridine nucleotide formation. In particular, quinolinate synthetase is involved in the condensation of dihydroxyacetone phosphate and iminoaspartate to form quinolinic acid. This synthesis requires two enzymes, a FAD-containing "B protein" and an "A protein".	0
NZ_CP009284.1\|WP_042171888.1\|72243_73125_+\|aminodeoxychorismate-lyase	gnl\|CDD\|181067	PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional.	6.39719e-109
NZ_CP009284.1\|WP_042171886.1\|71665_72247_+\|aminodeoxychorismate/anthranilate-synthase-component-II	gnl\|CDD\|235552	PRK05670, PRK05670, anthranilate synthase component II; Provisional.	7.00762e-134
NZ_CP009284.1\|WP_042171875.1\|60142_62197_+\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP009284.1\|WP_042171895.1\|74902_75112_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.26014e-11

>NZ_CP009284.1|WP_042171883.1|68762_69701_+|cysteine-synthase-A
MAKVVNSVTDLIGGTPLVRLNRLAPEGSAEIYLKLEYQNPGSSVKDRIALSIVEEAEKEGLLKPGGTIVEATSGNTGIGLALVAAAKGYKAIIVMPETMSLERRNLLRAYGAELVLTPGSEGMNGAVKKAEQILAENPDYFLADQFKNKANLKIHLETTGPEIVEAIESIGGPLDAFVAGIGTGGTISGAGEVLKKQYPGVKVYAVEPAASPILAGGKPGPHKIQGIGANFIPEILNQNVYDEIIHVENDEAFETARRVAKEEGVLSGISSGAAVFAALKVAKELGAGKKVVVVIPSNGERYLSTPLYNFEV
>NZ_CP009284.1|WP_081947420.1|67621_68566_+|hypothetical-protein
MMTRQERVLRNAVVILAIGTMVLGGLLFWSLRAMAVLKGDAAEGEPADIATAGGQPVTDREWMDELAKKHGDEVLLSMLNHIVVGKEAEALGITVTDDDIEEELLRSMAGYGSEEQYYAQMLSELGLSRQEVREETVYRLTLRAVATAGITISDAAIDQYLLENAERFAPKKQLQLSIIRVDTYEEAGLVMDRLEEGEDFAAVAGEVSTDAESREHGGSIGTVEEDDPFWPSELLRTAAGLEAGDIAGPLPAGEDYAVIRVERIIEPPGADKTEVREQVRQQLALEQAAPLQQVESDLRKKYDTAIYIDNGLQD
>NZ_CP009284.1|WP_042171881.1|66727_67612_+|Hsp33-family-molecular-chaperone-HslO
MDNKKDRLVRGTALHGRVRAFAVRTTELVDELRRRHDTYPTATAALGRTATAAAMMGAMLKGEEKLTVMVKGNGPIGQITAESNARGEVRGYVSNPHVHLPSNSLGKLDVAGAVGTEGFIDVSKDLGLKEPYRGSVPIVSGELGDDFTYYFAISEQTPAAVGLGVLVETDNSVRVAGGFIIQLLPGLTDAEISEIEQTLSTMPSVTALLDQGLEPEEMLTYLLPDAVILDGLDIAFKCQCSRERVEQTLISLGEAELERLIEEDDEAEVVCHFCNEAYLFKKDEMQAILDQARS
>NZ_CP009284.1|WP_042171879.1|65912_66680_+|type-III-pantothenate-kinase
MMLAVDIGNTNIVLGIYRKRELLHHFRLSTARQSTVDEYGVLIHNLFQMSNISFKDVEGVIISSVVPPLVQVIVEMCVKYIGKDPLLVGPGIKTGLNLRYENPREVGADRIVNAVAAIEQYKCPLVVVDFGTATTFDCIDAGANYLGGAIVPGLGISTEALYQRASKLPRIELEKPKKVIGRNTVHAMQAGIIFGYAGQVEGIVRRIKQEMNAPVLKVIATGGLATLIAGETDCIDEVNPMLTLEGLRIIYDRNQ
>NZ_CP009284.1|WP_042171878.1|65040_65916_+|carboxylating-nicotinate-nucleotide-diphosphorylase
MMFNGYNEELVQLIKSWLQEDVGSGDITTRTTIPAGHESKGIIHVKEAGVICGLPVAELVFEVVDPSLRFMTLVQEGQNVSKGTVIAEVEGSTHAILTGERLALNLMQRLSGVATRTAAFVEELNGLKTRLVDTRKTTPGHRMLEKYAVRVGGGANHRFGLYDAVMIKDNHIKGAGGILQAVGRARANIPHTMTIEVETESLEQVEEALAAGADIIMLDNMAPDLMKEAVRRIKTKAPHVKTEASGNVSLETIRAIAESGVDVISVGRLTYSFNSLDISLDLNARKEGTLS
>NZ_CP009284.1|WP_042171877.1|63434_65051_+|L-aspartate-oxidase
MIPQYLVDFDVHALPSVKTDVIVIGSGIAGLFTAIKAAEDRKVIVITKKSLMESNTRYAQGGIAAVFSKEDSPAYHRQDTLLAGAGLNSSSAVDVLVHEGPAGVHELIRLGTIFDEENGVLALTQEGAHSHRRILHANGDATGYEIVRALIEQVKQEENIEVWDDHFVIDLITENSECAGALVLRPNGERLFLQADATVLCSGGAGQLYRYTTNPEVATGDGVAIAYRAGAHVRDMEFIQFHPTALSYPGAPRFLISEALRGEGAVLRNIHGERFMERYHELLELAPRDIVARAIVSEMELTKSTFVYLDITHEPADMVKHRFPTIYETCMGYGLDITSDWIPVAPAAHYMMGGIKTDLNGESNIARLFACGEVSSTGVQGANRLASNSLSEAIVFGRRITERIRGLAPADWTSLSAGCNEGRTEQPTQAIVERRLKLQKVMVRYAGLRRNEGMLNKGLDELKRQLPIFSAALTRREEYEFANMLTCCLLITESALARQESRGAHYREDYPLRDDANWQKHLLQIRDLGIVEEFSDDV
>NZ_CP009284.1|WP_042171876.1|62456_63395_+|quinolinate-synthase-NadA
MEALALERKQEQNRELRGRLEQLKKERNAIILAHYYQRDEIQEVADFRGDSFLLAQKAAQTDAEVIVFCGVHFMGESAKILAPNKTVIIPDERAGCPMADMVNVDGLRRLKAQHPNAKVVTYINSSAEIKAETDICCTSANAVRVIESLDAEEIIWVPDKNLGHYVQEKTGKKLIIWEGYCNTHDMLTVKDVIEMKAKYPEAEFVVHPECRPEVVAMGDYVGSTTSIIDYCRKSDRRQFIVGTEDGTGYQLRLDSPDKEFHFATKFLVCPNMKVNNLKKLVKCLETMKPQIYVPPAVADKARTSLERMLQVR
>NZ_CP009284.1|WP_042171875.1|60142_62197_+|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein
MNRFIRNSGFYLILFLVVVGIVQFVSNGNESADFPRYDELRQEIKANNVKSMTIQFEGNAFLVTGEYKNLPADTKSKNFSTYVPPTDAAINELIAASDSNGVELTQKKMEGDSIWLTFLSSIIPLVIMFILFFFLFNNAQGGGGKVMNFGKSKARLYNEEKKKISFEDVAGADEEKQELVEVVEFLKDPRKFAAVGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGGNEGIIIVAATNRADILDPALLRPGRFDRQITVDRPDVKGREAVLKVHSRNKPLTKDVRLDVIAKRTTGFTGADLENLLNEAALLAARRNRKDIGMREVDEAIDRVIVGTEKRSRIISDREKRIVAYHEAGHTIAGYFLEHADMVHKVTIIPRGRAGGYVIMLPKEDRMLVTKQELLDKVTGLLGGRVAEEMFIGEIGTGAYSDFQQATSIVRSMIMQYGMSDKLGPMQFGTSQGQVFLGRDIGHEQNYSDSIAYEIDQEMQNFIRSCYERCRELLTKHSKEMHLIANTLLEKETLELDQIRELIEQGFLTEDGEPSEDSGVTHEAGEPVIDSIGDVRVRIQGKTDETPSTLPDLTKDIPNKPDSGDGNDPDGNNKDGGGNLV
>NZ_CP009284.1|WP_042171874.1|59492_60032_+|hypoxanthine-phosphoribosyltransferase
MQNDIQEILISEEEIQQRIRELGAQLSEEYAGRTPLVICVLKGAFIFMADLVKVITVPVEMDFMAVSSYGGTTKSSGIVKIIKDLDTSVEGRDVLIVEDIIDSGLTLSYLIDMLQGRNAASIKVVTLFDKPSGRAVTLEAEYTGFVIPDAFLVGYGLDYAELYRNLPYVGVLKPEVYTK
>NZ_CP009284.1|WP_042171873.1|58004_59447_+|tRNA-lysidine(34)-synthetase-TilS
MEQMKELVQSVMESAAEHELWAPHDTLVVAVSGGPDSVALLRILYEISQKWTPLKLVCAHVNHGFREESAGEAEFVRRLAEELGLPFELAEFDIPAMAKDSGLGPEGTAREKRYAFLIEIALRYGARAVALAHHADDQAETVLMRLLRGSGSGGLAGMRWKRTEKKVELIRPFLRINKTALTGLCQEQGYNYVLDASNLLTHYTRNAVRLDLLPMLEKYNPRVKQSLLQLSEITGAEDEYMEANALKCFQELVSAEHGKYTLKRASFAALPSALQRRLIKLILNYLSADALSPDFSKIEAVRRGTLQEQPTGWNLDLGGGLICVRQYDTILFSSKPQPRKVSYTYRLSLPHSRLDIEEIGKAMTMTVLERESFALQGEDSGKTSAWFDSEELAMPLTVRSRLPGDTIRVMGLNGSKKVKDIYIDDKIPSSERSVIPLVCDAAGNIVWIPGVRRSMHAAVGRHTASVLLLTLEELEKSEEA
>NZ_CP009284.1|WP_042171884.1|70040_71669_+|anthranilate-synthase-component-I-family-protein
MALEILTAYQDWEQWADGSWSVLPLIIRSARNQSGLPATWISAWKQASPYSVVLESGKGGRYTYLGLQPVSVLEGKAGRAEVLTLPRMAADNAAAQPVPVELQGEPLDVLHGWMKPYSSPRMDLPELPPFAGGCIGFLSYDVVRSLEELPSLAADNPRFPDYLFMRFEELWIYDHEDNSLYCTVHVPVADDSRRHPPALKAQYAAAAARAEEMLEEWKQLCIAPVPEEYSQKENSRIIAAIEESVSLSGQWPGMQSAFSPEQFQQAVLDVQKYIRQGDVFQVNLSLRQEAQLKSPPEDVYEWLRRLNPSPYMGLLRSPGFALSSASPELLVKLHGDKVSARPIAGTRRRGLTPAEDAAMEAELRGSEKEIAEHIMLVDLERNDIGRVAAYGSVSVPELLTVERYSHVMHLVSQVEGRIASGKDAYDVMAALFPGGTITGAPKVRTMEIIEELEPVRRGPYTGSMGWIDYNGNMELNIIIRTLAVKDGTGYIQTGAGIVIDSEPYREYRECHNKAKAVVKAVLCSELQHESQAASRAKGGAAL
>NZ_CP009284.1|WP_042171886.1|71665_72247_+|aminodeoxychorismate/anthranilate-synthase-component-II
MILVIDNYDSFTYNLVQYLGELGEDVKVHRNDEITIGEIEAMAPDHILISPGPCTPNEAGISLELLQYFKGVIPIFGVCLGHQAIGQAFGGNVIRAERLMHGKTSPIHHNGTSVFEGMESPFTATRYHSLIVERESLPDCLEITAETAEGEIMALRHKEYPIEGVQFHPESIITDHGHTMLRNFLKRRAGEPA
>NZ_CP009284.1|WP_042171888.1|72243_73125_+|aminodeoxychorismate-lyase
MKYIGLNHKAVEAKDAVVSALDHGFLYGMGLFETFRTYGGAPFLLDRHLERLSAGCRQLGIPFDADEAALGKWIKQVMEANGLQEAYIRYTVTAGEDILGLPAGEYRQPNHLLYIKELPKLDPALYLEGKGLQLLSTPRNTPEGPVRLKSLHYMNNILAKRELAGYVSAAGGAEGLMLTGQGYIAEGIVSNIFYVKGDVLYTPDIRAGILPGITREMVLALAPEAGLQAEQGFYRWEQLLEADEIFLTNSIQEIVPVTMLWQGNEPFQAGKGFCGRYTAGLIRLYRERTEALR
>NZ_CP009284.1|WP_042171890.1|73121_73976_+|dihydropteroate-synthase
MKPVIYKRTYHFPDSTLSLGSRTLIMGILNVTPDSFSDGGLWADPDRAVEHALQMAAEGADIIDIGGESTRPGHEPVSMQEELDRILPVIKSIHRAAPQLILSIDTYKAEVARQAIQAGAHIINDVWGAKADPDMAQAAAEAGCPIILMHNRHDRNYQNLQADMAADLQESIELALAAGVDPGNIILDPGIGFAKDYTENLQAMMALDSLSAMGYPVLLATSRKKFIRTVLELPADDVVEGTAATVAFGIAQGCQIVRVHDVARIKRTVQMCDAMLYSSSLQAR
>NZ_CP009284.1|WP_042171892.1|74027_74390_+|dihydroneopterin-aldolase
MDKMKLHRMEYYGYHGVFEEERKLGQRFYVDLELELDLQAAGQNDDLTQTVNYAEVHYTVKNIVETKSFKLIEALAEHIASALLDTYTIINAVTVKVTKPHPPFDIHFQGVTVELRRTRK
>NZ_CP009284.1|WP_042171893.1|74399_74951_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MNIHSTSEASEAYIALGANLGNREGTLKEALQRLDRHEGIEVVRCSSIYETEPVGYLDQPQFLNMAAALRTTLAPEALLQAMLEIENQLGRVRDIRYGPRTVDLDLLWVDGQTLDTPDLTLPHPRMMERAFVLVPLSDIVPQDDSQSLLYGKLAAALQDLDGKEGMRLWTSKEWEDGSEHSGS
>NZ_CP009284.1|WP_042171895.1|74902_75112_+|helix-turn-helix-transcriptional-regulator
MDIKRMGRRVRAFRKLKGFTQQQLADSVGISLAVLGAVERGNRRLEDKILNKIADVLGISAEELADPAL
>NZ_CP009284.1|WP_042171897.1|75173_76187_+|tRNA-dihydrouridine-synthase-DusB
MLKIGGIEMKNQVVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSDKAILHGNKRTREMLFVDEREKPLSLQIFGGDRASLVEAAKVVDKETNADIIDINMGCPVPKVTKCDAGARWLLNSDKIYEMVSAVVEAVDKPVTVKMRIGWDSEHIFVEENARAVERAGGQAVSVHGRTREQLYTGRADWKYIKMAKEAVSIPVIGNGDVNTPEDARAMLDQTGCDGVMIGRGALGNPWMLYRTVQYLSTGELMPEPGAEEKIKVAILHMDRLIALKGEAVAVREMRKHLAWYLKGFRAAARVKDHIMEGTERDEMVRILHDFVDQLRDEEDQDTGAALMAL
>NZ_CP009284.1|WP_042171900.1|76505_76985_+|transcription-elongation-factor-GreA
MSEKEVILTPDGLKRLEEELETLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFIEGRIITLEKMLRNARIINSDEIVTDVVSVGVTVSVEDLEYGDVMEYTIVGTAESDPLNNKISNESPVGRAIMGKKIGTVVDVSVPAGVIQYKILDITMK
>NZ_CP009284.1|WP_042171902.1|77121_78636_+|lysine--tRNA-ligase
MTEELNTVETSEKELSELLRIRRAKLDELRALGIDPFGKKYERTAGAGDLLAKYDGQTKEELDELNLDVSIAGRIMAKRVMGKASFAHIQDLSGKIQIYVRQDSIPEEQYAAFNVLDLGDIIGVRGTVFKTKTGETSIKASNLEVLSKSLLPLPEKYHGLKDVELRYRQRYVDLIINPEVQQTFIARSRIIQSMRRYLDSLGYLEVETPTLHAIAGGAAARPFITHHNTLDMQLYMRIAIELHLKRLIVGGLEKVYEIGRVYRNEGISTRHNPEFTMIELYEAYADYKDIMQLTENMIAHIAQEVLGSQKINYQGQEVDLSPGWRRVTMVDAVKEVTGVDFGVHMSDEEAQRLAKEHRVPVEKHMTFGHILNAFFEQFVEETLIQPTFVMGHPVEISPLAKKNDLDPRFTDRFELFIVAREHANAFSELNDPIDQRQRFEAQIHEKEQGNDEAHEMDDDFIRALEYGMPPTGGLGIGVDRLIMLLTNSASIRDVLLFPHMRNKD

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Crispr_ID: NZ_CP009284_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009284_2

136250-136357

Orphan

Consensus_repeat	Method
GGTCGGGGGTTCGATCCCCTCTGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009284_2

>merge|NZ_CP009284|2|136250-136357|CRISPRCasFinder
GGTCGGGGGTTCGATCCCCTCTGCCGCTACCATATTTTCGGAGGCTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGGGGTTCGATCCCCTCAGCC

>NZ_CP009284|2|2|136250-136357|CRISPRCasFinder
GGTCGGGGGTTCGATCCCCTCTGCC	GCTACCATATTTTCGGAGGCTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAG
GGTCGGGGGTTCGATCCCCTCAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009284.1\|WP_042171969.1\|124897_126175_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|100105
NZ_CP009284.1\|WP_042171988.1\|143176_144394_+\|acyltransferase	unknown	unknown	gnl\|CDD\|376607
NZ_CP009284.1\|WP_042171994.1\|147577_148795_+\|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|237043
NZ_CP009284.1\|WP_042171973.1\|127015_128788_+\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|235505
NZ_CP009284.1\|WP_039869007.1\|138333_139455_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NZ_CP009284.1\|WP_042171962.1\|121082_121937_+\|class-II-fructose-1,6-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|181501
NZ_CP009284.1\|WP_042171967.1\|123513_124872_+\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|236490
NZ_CP009284.1\|WP_042181958.1\|141691_142333_+\|pyrophosphatase-PpaX	unknown	unknown	gnl\|CDD\|237336
NZ_CP009284.1\|WP_042171976.1\|129184_129781_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP009284.1\|WP_042181956.1\|130074_130272_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042171980.1\|137129_138224_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379258
NZ_CP009284.1\|WP_042171992.1\|145727_147278_-\|gluconokinase	unknown	unknown	gnl\|CDD\|130381
NZ_CP009284.1\|WP_042171982.1\|139696_140635_+\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
NZ_CP009284.1\|WP_042171984.1\|140650_141682_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
NZ_CP009284.1\|WP_042171990.1\|144483_145638_+\|acyltransferase	unknown	unknown	gnl\|CDD\|376607
NZ_CP009284.1\|WP_042171965.1\|122124_123378_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|183779
NZ_CP009284.1\|WP_042171971.1\|126289_126487_+\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|376487
NZ_CP009284.1\|WP_042171975.1\|128836_129148_+\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_CP009284.1\|WP_042171978.1\|130311_130575_+\|pro-sigmaK-processing-inhibitor-BofA	unknown	unknown	unknown
NZ_CP009284.1\|WP_042171986.1\|142340_142850_+\|acyltransferase	unknown	unknown	gnl\|CDD\|100053

Protein	Function_ID	Function_description	E-value
NZ_CP009284.1\|WP_042171969.1\|124897_126175_+\|radical-SAM-protein	gnl\|CDD\|100105	cd01335, Radical_SAM, Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme of the biosynthesis of molybdopterin.	2.07897e-10
NZ_CP009284.1\|WP_042171988.1\|143176_144394_+\|acyltransferase	gnl\|CDD\|376607	pfam01757, Acyl_transf_3, Acyltransferase family. This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long.	1.10796e-14
NZ_CP009284.1\|WP_042171994.1\|147577_148795_+\|ATP-phosphoribosyltransferase-regulatory-subunit	gnl\|CDD\|237043	PRK12292, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional.	4.01387e-141
NZ_CP009284.1\|WP_042171973.1\|127015_128788_+\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|235505	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_CP009284.1\|WP_039869007.1\|138333_139455_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	3.51166e-177
NZ_CP009284.1\|WP_042171962.1\|121082_121937_+\|class-II-fructose-1,6-bisphosphate-aldolase	gnl\|CDD\|181501	PRK08610, PRK08610, fructose-bisphosphate aldolase; Reviewed.	1.43862e-168
NZ_CP009284.1\|WP_042171967.1\|123513_124872_+\|transcription-termination-factor-Rho	gnl\|CDD\|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0
NZ_CP009284.1\|WP_042181958.1\|141691_142333_+\|pyrophosphatase-PpaX	gnl\|CDD\|237336	PRK13288, PRK13288, pyrophosphatase PpaX; Provisional.	5.74077e-85
NZ_CP009284.1\|WP_042171976.1\|129184_129781_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	2.96909e-123
NZ_CP009284.1\|WP_042171980.1\|137129_138224_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379258	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain. This helix-turn-helix domain is often found at the C-terminus of PucR-like transcriptional regulators such as Bacillus subtilis pucR and is likely to be DNA-binding.	2.07861e-17
NZ_CP009284.1\|WP_042171992.1\|145727_147278_-\|gluconokinase	gnl\|CDD\|130381	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. [Energy metabolism, Sugars].	0
NZ_CP009284.1\|WP_042171982.1\|139696_140635_+\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	6.07553e-169
NZ_CP009284.1\|WP_042171984.1\|140650_141682_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	8.97549e-104
NZ_CP009284.1\|WP_042171990.1\|144483_145638_+\|acyltransferase	gnl\|CDD\|376607	pfam01757, Acyl_transf_3, Acyltransferase family. This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long.	3.74931e-18
NZ_CP009284.1\|WP_042171965.1\|122124_123378_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|183779	PRK12830, PRK12830, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed.	0
NZ_CP009284.1\|WP_042171971.1\|126289_126487_+\|50S-ribosomal-protein-L31	gnl\|CDD\|376487	pfam01197, Ribosomal_L31, Ribosomal protein L31.	1.00434e-34
NZ_CP009284.1\|WP_042171975.1\|128836_129148_+\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	8.89837e-43
NZ_CP009284.1\|WP_042171986.1\|142340_142850_+\|acyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	5.68577e-30

>NZ_CP009284.1|WP_042171978.1|130311_130575_+|pro-sigmaK-processing-inhibitor-BofA
MRNVALAVLIGSVILLGVIVFRKKLGFAWLTLFGTHLVLAALGIYIVNFSGLLTEIYIPLNPATIGAVTVLGLPGVLMLLGLKITLF
>NZ_CP009284.1|WP_042181956.1|130074_130272_+|hypothetical-protein
MDEDWGVFLEVRNAQVEWERAHLMFDEALGQDQIDYAIFILEAAERKYQIHLKHAKSLGINRSRM
>NZ_CP009284.1|WP_042171976.1|129184_129781_+|recombination-protein-RecR
MYYPEPLAKLIDAFTRLPGIGPKTAARLAFHVLHMKEDEVIDFAKALVSVKRNLHYCSICCNITDTDPCRVCQDKTRDASVICVVQESKDLVAIERTKEFDGYYHVLQGAISPMEGIGPDDIRLKELLTRLSDERVKELIMATNPNIEGEATAMYISRLVRPFEIKITRIAHGLPVGGDLEYADEVTLSKALEGRREL
>NZ_CP009284.1|WP_042171975.1|128836_129148_+|YbaB/EbfC-family-nucleoid-associated-protein
MNNMNQMMKQVKKMQEQMLKAQEELGSKTMEGTSGGGVVTVQVNGHKKVLSIQIKPEAVDPDDVEMLQDLVITAVNDALTKAEELANNDMGKFTGGMKIPGLF
>NZ_CP009284.1|WP_042171973.1|127015_128788_+|DNA-polymerase-III-subunit-gamma/tau
MEHIALYRAWRPQSFQDMVGQQHIIQTLQNAIREQRVSHAYLFSGPRGTGKTSAAKVLAKAVNCERGPGPEPCNECPSCLRITAGNIMDVQEIDAASNRGVEEIRDLRDKVKYAPTEVRRKVYIIDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHKLPATIISRCQRFDFRRVSLEEQSGRLAEICLKEGITADADALQYIARLSDGGMRDALSILDQISSFTDGQVTYQQVLGMTGGIPSEQFARLATAILDGDMGRLLELVEQLMQEGKSADKCLENLLYYFRDLLMIKMVPNADKLTDRVLNPADFRDMAAGFSRGRLFQIVETLNRYLGEMKYATHPQTLFEVALMKLCTMQQEAEPAVTSSTQAGVTRESSAAGQPAAGELDALKRQIASLEKKLEQAIQAGGVSGGGRDQAAGQRQTPAATPAPRVSSGSKLPPQLDKFIASKDSSDSNTVYKQWSTVLQAVKEERVTVHAWFVDGEPVSVMDDAVLVAFKNTIHRDTTEKPANRQVIEQVFATRLGKPYRLVTMMLRDWTDASQKSAAKPGTEELRLEHEHDAAEVKSEPWIDEAIQLFGEDLVVIKE
>NZ_CP009284.1|WP_042171971.1|126289_126487_+|50S-ribosomal-protein-L31
MQEAIQPKYHITTVTCACGNTFEAGSVKQELRVEICSSCHPFFTGKQKFLDAGGRVDKFKKKYGI
>NZ_CP009284.1|WP_042171969.1|124897_126175_+|radical-SAM-protein
MYLVYADEQGNVYDHPELYGLARSGDMIVEMLEEELIPLPEGATLVGLPCTRAVGMNPETGEMLPLPEGSQAVGALLPQGFTRLCLPGYVKTDKSYKLPLFGYSAVVWKDGSFYVAADPTDDPEQWNPLNCDRGEVEVGVGHLKAKYPENRLYDHLSNCALGYECLTSSNTFLGRWEGAVPVSYSCNAGCFGCISEQPDDSGFVSPQTRMNFRPTVSEISQVMLEHLKTPQSIVSFGQGCEGEPSTQAKLIIEAIREVRAVTDLGYININTNAGLSDHIRGIVDAGLDLMRVSTISALDDHYNAYYKPRGYTLANVEKSLKYASSQGVYTSINYLIFPGVTDREEEIEAMVEFCRRTDLKLIQMRNLNIDPESYLGLIPPARGEILGMKTMLDIFREELPDVVIGSYTHIPPSELTRVKERRVHL
>NZ_CP009284.1|WP_042171967.1|123513_124872_+|transcription-termination-factor-Rho
MDLQISDLEEMKLTELYKLAKKYQIPYYGQLKKRELIFAILRAQAEQSGLMFMEGVLEILPEGYGFLRPINYLPSPEDIYISASQIRKFDLRSGDLVSGKCRTPKENERYFGLLQVNAVNGENPASAAERLHFPALTPLYPQDKLPLETSPTHLSTRIMDLLAPVGLGQRGLIVAPPKAGKTLLLKEIANSISTNNPEIELFVLLIDERPEEVTDMQRSVKGEVVASTFDELPENHIKVAELVLQRALRLVEHKKDVVILMDSITRLARAYNLVVPPSGRTLSGGIDPAAFHRPKRFFGSARNVEEGGSLTILATALIDTGSRMDDIIYEEFKGTGNMELHLDRKLAERRIFPAIDIRRSGTRREEVLLSKEELDTIWAIRKNMNESYDFVEGFLKKLRDSKTNAEFLASFDVSGSKDSSSPNGTASNGGTSNSGASARRTSRPKTPSVPTT
>NZ_CP009284.1|WP_042171965.1|122124_123378_+|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MEKLMIGGGRPLKGVVTISGAKNSAIALIPAAILAESEVVLDNLPSLSDVAVYSEILEELGATVSWTGSQMRIDPSRIVSIPMPNGPVKKLRASYYMMGALLGRFKEATIGLPGGCNFEPRPIDQHIKGFEALGATVTNDHGSIHLYAKELRGAKIYLDVSSVGATINIMLAASRAKGSTIIENAAKEPEIIDVATLLNSMGAVIKGAGTETIRIEGVTEMHGCRHSIIPDRIQAGTYMIAAAATRGNVLIDNVIPKHLEALTAKLLEMGVDIEELDESIRVIGRSRYEHVDVKALIYPGFATDLQSPMTSMLTQAEGVSVLSDFVYSNRFKHVPELVRMGAKIRVEGRSAIIEGGRLNAAKVKAADLRAGAALVIAGLTVGDGITEVTGVEYIDRGYDNLVTNMRDLGAEIWREED
>NZ_CP009284.1|WP_042171962.1|121082_121937_+|class-II-fructose-1,6-bisphosphate-aldolase
MPLVSMTDMLNKALEGKYAVGQFNINNLEWTQAILGAAEEEKSPVILGVSEGAARHMGGFFTVVKMVEGLVHDMKITVPVAIHLDHGSSFDKCKEAIDAGFTSVMIDGSHHPIAENIEMTKKVVEYAHAKGVSVEAEVGTVGGQEDDVIGGIQYADLNECVELVNATGVDTLAPALGSVHGPYLGEPNLGFKEMEEIRDAVKLPLVLHGGTGIPLHDIQKSISLGTSKINVNTENQIAFAKVVREVLAAKPDAYDPRTFIAPGRTAIKETVIGKIREFGSNNKA
>NZ_CP009284.1|WP_042171980.1|137129_138224_+|helix-turn-helix-domain-containing-protein
MDSEALRQRLEQLTGKRTGIKQLGRQHSASLFAIGADPQDQPVTHEGHLWVPLYENEGRFTALWVEMEGLSPLELQLVNYAARNYAVALKATGLKEEGEVEARQLSLWLNSQLEQEKTDAEIPDEMSLKSRLFGDMIPFLLVSENVHNPQMTYRSLMKLLRNYFENDILLIPLQEKEWLILARKELLTGGDDKEDEEESEDELLAQTGMGLHELIASEWVGVFHLAVAPAIIPVKGLTGSLALLRETIVLGRIFQVGDYIHLPWELHMERLVNSIPDGRRRQLLGQIGDYSSVLADKEMLLTLETFFEMDCNVSETAKKLYIHRNTLLYRLDKIKQETGADVRSFGDAAIVKLAMLLYKVTKRK
>NZ_CP009284.1|WP_039869007.1|138333_139455_+|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MAGVRLEHIFKKYPGSDKATVMDINLDIKDKEFLVLVGPSGCGKSTTLRMIAGLEEISEGKMYIGDRVVNDVAPKDRDIAMVFQSYALYPHMSVYQNMAFGLKLRKVKKEEIDKKVREAARILDIEHLLERKPKALSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRGQMRAEITKLVKRLETTCIYVTHDQTEAMTMGDRIVVMYDGIIQQAASPEELYNEPTNLFVAGFIGSPTMNFINGTLSDVNGAVRFRAENLDVEVPGGKATILRSKGYIGKEVILGLRPEDIHEEPVFLEASPNTIFSSLVDVTENLGHEMLLYLSGVGTGTVIARVDGRSTTREGSKPKLAIDMNKVHIFDKESELNVLLG
>NZ_CP009284.1|WP_042171982.1|139696_140635_+|HPr-kinase/phosphorylase
MAKKVKVSELVQHFQLEVVSGHEGLKRPITVDDLNRPGLEMAGYFEYYPEERVQLLGKTELAFFSMLPEEERIKRIKGICTDNTPCIVITRALDVPQELIDVSNEKGLPVLRSSMATTIFSSRLTSFLEGKLAPTATIHGVLCDVNGVGMLITGSSGIGKSETALELVKRGHRLIADDAVEIRQTSDNQLHGTAPELIRHLLEIRGVGIINVMTLFGAGAIRNHKRITLVVRLEAWQQDKQYDRLGLDEETTRIIDTDVTLVTIPVRPGRNLAVIIEVAAMNYRLKQMGFNAALQFTNKLTATISEDMDDLD
>NZ_CP009284.1|WP_042171984.1|140650_141682_+|prolipoprotein-diacylglyceryl-transferase
MFFSLAINPIVFSIGSLPVHWYGLILGVGALAGLFLAIREGKRFNIPQEFFMDLLLLGVPSAIIGARIYFVAFMWDDYKDNLLDVFKIWNGGIAIYGALIGAIICGIIYFRYKGYPFWRIVDICAPGLLAGQMIGRWGNFVNQEAYGGPIEESFLRDKLHLPDFIVNQMYIGDAFHHPTFLYESLWSLLGIALLMVLRRQKFVKAGEIFLSYFIWYSIGRFFIEALRTDSLGFTGSSGVASLMDGLWSPMTWMGFEQGYFDPAYGNIRISQLLALLIIIAAIVIIVVRRVTGQANAYYSDPIVSTKAAAADPVVPEQAAVTPQKAPQDTQSEAEQAENQQRKE
>NZ_CP009284.1|WP_042181958.1|141691_142333_+|pyrophosphatase-PpaX
MIEYVLFDLDGTIVNTNELIINSFMHALKENNLPPLTREQIIPHMGTTLQQQISTFTGLADTSALELSYRAYNNAHHDELVAAFPRVNETMDELLKRGIKLGIVTTKIRPTTIRALEMFDLLKYMDTIVTVNDVEHAKPHPEPVLTAIRNLNADPQRTLMVGDSAVDIQSAQAAGVRVAAVAWSLKGEETLSKYNPDYIIHDMADLLTIVKQG
>NZ_CP009284.1|WP_042171986.1|142340_142850_+|acyltransferase
MRKVTRYPVEGHNSLWYIYRTVSPWKGVRNFIFIQIARYCPILPVKNWIYRSILGMKVGKHTAFGLMAMVDVFFPEKITVGENSIIGYNTTILAHEYLIKEYRLGEVVIGENVLIGANTTILPGVTIGDGAIVAAGSVVHKDVAAGSFVGGNPLRELRPAAAGSDREEI
>NZ_CP009284.1|WP_042171988.1|143176_144394_+|acyltransferase
MDAARQERLPQLDIYRALAITGVLHVHASSFAAGEQALNSPYYYWLNWINIFFKFGTPSFIFLSSFVLFYNYYGRPVTKSLIGNFYRRRLKYVLLPYLLASIGYYALTLYVNGVLMQQPVQNLYSFLGALFTGSAYAHLYFVFISIQFYLLFPLILKLLQSSRIWVKWAFPLGLALQWGFIIWNKYQLHIVGKGSLSISYLAYYMLGAYIAINFEGIKGWLVLPWNELRSGHKRLIVLLLTSWLSAAFIHVQLWYEARHFGIWTDSLWYELLWNIHTLLSALVLLYVTFWIYRRAPRRVVAFLTRMGELSFAVYLIHPLLLAVYRRFRYNIPIDSLLYVGFIYGGLLVALAGSWMIVQFTFRRVPRAWIVFGSVPRTLAPPVKGRQGYTAGDDSAQAGLKGKHGA
>NZ_CP009284.1|WP_042171990.1|144483_145638_+|acyltransferase
MGHKERIPQLDIFRAIAIFAVLAIHATSRTLSETMGTGMFHPFLFINKFSQFAVPSFVFLSGFVLFYNYIDRPLSGKTLGKFYSRRLIYIIVPYFIFSLLYFCLKMTAGHTWNMPLDDMAAKLWKYLWTGTAYTHLYYIIIIIQFYVLFPLMLWCLQKVRRLAAWAPVIGLALQWGFVLLNKYMVNNGYWQLSKGSLAITYFSYFLLGAAVAVYYGSLKKWLIPSREGWKSGKGGVWTALWLLWAAAGAIHVQLWFNNYTKKTVINSLWYEGFSNLHALLSCLVLLHLSFLLFGTGRSLLTRMLISVGACSFGIYLVHPAILFFYRKLPFHGGSLAYTAAIAGGFLAALLLSWLVVAVAFRYVKPAWVLFGSGPQKPQSKAAVK
>NZ_CP009284.1|WP_042171992.1|145727_147278_-|gluconokinase
MNLNTSYMIGVDIGTTSTKAVLFRENGTIVTQASEGYPLHQPSPSVAEQDPDQILSAVIHTVAAVMQSSRIKPDELLFLSFSSAMHSVIAVDADGNPLTACITWADNRSSAAAARLKNELNGHELYLRTGTPIHPMSPITKLMWLGEEQPELFRQAYKFISIKEYVFAKLFGKYVIDYSIASCTGMFNLEKLDWDEEALRIAGITAERLSAPVPTTELIQGLLPGFAEELGLLDSTPFIVGASDGVLSNLGVGAIQPGVVAATIGTSGAIRTVVDRPLTDPKGRIFCYALTEKHWVIGGPVNNGGMLFRWVRDEFAASEVETAKRLGIDPYEVLTRIAEQVPPGSNGLLFHPYLTGERAPLWNPDARGSFFGLSMTHRKEHMIRSVLEGVIFNMYTVLLAMEECIGRPNRILATGGFARSSLWRQMMADIFDQEVIIPESIESSCLGAVVLGLYATGRADSLDIVFGMIGSTHSHQPVQSHAKIYKQLLPIYISVFRALESQYEAIAEFQREQAGE
>NZ_CP009284.1|WP_042171994.1|147577_148795_+|ATP-phosphoribosyltransferase-regulatory-subunit
MSKPKGFEKPAGVRDYLPRAVKKLRKIEHDVLHCMSRWGYQQMITPTLEYYDTVGVASSTSDQKLYKLLNNRGQALVLRSEMTAPVARVVSSLLKDEPLPLRLSYHANVFRAIEEEAGREAEFFQTGVELVGDDSPEADAEVVALAIASLQAAGVKSFKIAMGHVGFLNGLFQEAVPNLPEAQEELKSHLLGRDYVAFRDTLRRLELPDAQKSELYGLLRLRGSKEICGQALELTSHPLARASIEHLCKVWEVLVSYGVSEHVLIDLTMIGDFSYYTGMTFEGYASELGFPVCAGGRYDNLLQQFGRPVPSTGFSLKTNRILDGVTGMPEEEELPVLVQYDALRRTEGLAEAARLRSEGHMVVTRLAAGPADLKTVKRLDPERVLADGGQYGEIYTFVSFVSEHG

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Crispr_ID: NZ_CP009284_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009284_3

629076-629168

Orphan

Consensus_repeat	Method
CCCAATGAAGTGAAGCTCCATAAAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009284_3

>merge|NZ_CP009284|3|629076-629168|CRISPRCasFinder
CCCAATGAAGTGAAGCTCCATAAAACTAGGCGTATGCTTCCCGGAGCGAGTTTTATTGCGAAGCATCCCAATGAAGTAAAGCTCCATAAAACT

>NZ_CP009284|3|3|629076-629168|CRISPRCasFinder
CCCAATGAAGTGAAGCTCCATAAAACT	AGGCGTATGCTTCCCGGAGCGAGTTTTATTGCGAAGCAT
CCCAATGAAGTAAAGCTCCATAAAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009284.1\|WP_052418891.1\|614619_616032_+\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP009284.1\|WP_052419280.1\|641683_642112_-\|tRNA-(N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase-TrmO	unknown	unknown	gnl\|CDD\|187753
NZ_CP009284.1\|WP_081947443.1\|638050_638836_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366738
NZ_CP009284.1\|WP_081947444.1\|639487_640684_+\|DUF4179-domain-containing-protein	unknown	unknown	gnl\|CDD\|379369
NZ_CP009284.1\|WP_042172662.1\|630151_630553_+\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
NZ_CP009284.1\|WP_042172658.1\|621673_623074_+\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP009284.1\|WP_052418892.1\|620507_621026_-\|DUF3278-domain-containing-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_156131067.1\|615934_618703_+\|DUF4129-domain-containing-protein	unknown	unknown	gnl\|CDD\|376628
NZ_CP009284.1\|WP_042172655.1\|618895_620434_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP009284.1\|WP_042172652.1\|613048_614479_+\|polysaccharide-deacetylase	unknown	unknown	gnl\|CDD\|200569
NZ_CP009284.1\|WP_042172672.1\|638985_639570_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP009284.1\|WP_042172664.1\|630604_631255_+\|class-D-sortase	unknown	unknown	gnl\|CDD\|320681
NZ_CP009284.1\|WP_042172656.1\|621015_621219_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224393
NZ_CP009284.1\|WP_042172682.1\|642264_644403_+\|DNA-topoisomerase-III	unknown	unknown	gnl\|CDD\|236078
NZ_CP009284.1\|WP_042172649.1\|612271_612940_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP009284.1\|WP_042172678.1\|640761_641661_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP009284.1\|WP_042172666.1\|631627_632437_+\|transglutaminase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376628
NZ_CP009284.1\|WP_042172660.1\|623236_625246_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224720
NZ_CP009284.1\|WP_081947442.1\|629184_630162_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NZ_CP009284.1\|WP_052418893.1\|625242_629061_+\|phospholipid-carrier-dependent-glycosyltransferase	unknown	unknown	gnl\|CDD\|374423

Protein	Function_ID	Function_description	E-value
NZ_CP009284.1\|WP_052418891.1\|614619_616032_+\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	2.53192e-20
NZ_CP009284.1\|WP_052419280.1\|641683_642112_-\|tRNA-(N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase-TrmO	gnl\|CDD\|187753	cd09281, UPF0066, Escherichia coli YaeB and related proteins. Uncharacterized protein family UPF0066. This domain includes Escherichia coli YeaB, Archeoglobus fulgidus AF0241, and Agrobacterium tumefaciens VirR. Proteins with this domain are probable S-adenosylmethionine-dependent methyltransferases but they have not been functionally characterized and the substrate is unknown.	3.36861e-42
NZ_CP009284.1\|WP_081947443.1\|638050_638836_+\|hypothetical-protein	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	7.09267e-29
NZ_CP009284.1\|WP_081947444.1\|639487_640684_+\|DUF4179-domain-containing-protein	gnl\|CDD\|379369	pfam13786, DUF4179, Domain of unknown function (DUF4179).	9.86999e-14
NZ_CP009284.1\|WP_042172662.1\|630151_630553_+\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	6.17835e-21
NZ_CP009284.1\|WP_042172658.1\|621673_623074_+\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	6.72616e-128
NZ_CP009284.1\|WP_156131067.1\|615934_618703_+\|DUF4129-domain-containing-protein	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	6.97741e-31
NZ_CP009284.1\|WP_042172655.1\|618895_620434_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP009284.1\|WP_042172652.1\|613048_614479_+\|polysaccharide-deacetylase	gnl\|CDD\|200569	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins. This family is represented by a putative polysaccharide deacetylase PgdA from the oral pathogen Streptococcus mutans (SmPgdA) and Bacillus subtilis YheN (BsYheN), which are members of the carbohydrate esterase 4 (CE4) superfamily. SmPgdA is an extracellular metal-dependent polysaccharide deacetylase with a typical CE4 fold, with metal bound to a His-His-Asp triad. It possesses de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. SmPgdA plays a role in tuning cell surface properties and in interactions with (salivary) agglutinin, an essential component of the innate immune system, most likely through deacetylation of an as-yet-unidentified polysaccharide. SmPgdA shows significant homology to the catalytic domains of peptidoglycan deacetylases from Streptococcus pneumoniae (SpPgdA) and Listeria monocytogenes (LmPgdA), both of which are involved in the bacterial defense mechanism against human mucosal lysozyme. The Bacillus subtilis genome contains six polysaccharide deacetylase gene homologs: pdaA, pdaB (previously known as ybaN), yheN, yjeA, yxkH and ylxY. The biological function of BsYheN is still unknown. This family also includes many uncharacterized polysaccharide deacetylases mainly found in bacteria.	1.16436e-81
NZ_CP009284.1\|WP_042172672.1\|638985_639570_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	2.34891e-29
NZ_CP009284.1\|WP_042172664.1\|630604_631255_+\|class-D-sortase	gnl\|CDD\|320681	cd06166, Sortase_D_2, Sortase domain found in subfamily 2 of the class D family of sortases. Class D sortases are cysteine transpeptidases distributed in Gram-positive bacteria (mainly present in Firmicutes). They anchor surface proteins bearing a cell wall sorting signal to peptidoglycans of the bacterial cell wall envelope, which is responsible for spore formation under anaerobic conditions. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. The prototypical subfamily 2 of class D sortase from Clostridium perfringens (named Cp-SrtD) recognizes the LPQTGS signal motif for transpeptidation. Its catalytic activity is in a metal cation- and temperature- dependent manner. The presence of magnesium appears to enhance Cp-SrtD catalysis towards the LPQTGS signal motif.	4.11115e-68
NZ_CP009284.1\|WP_042172656.1\|621015_621219_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	1.5703e-22
NZ_CP009284.1\|WP_042172682.1\|642264_644403_+\|DNA-topoisomerase-III	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	0
NZ_CP009284.1\|WP_042172649.1\|612271_612940_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.8281e-39
NZ_CP009284.1\|WP_042172678.1\|640761_641661_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.31302e-18
NZ_CP009284.1\|WP_042172666.1\|631627_632437_+\|transglutaminase-domain-containing-protein	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	1.10806e-27
NZ_CP009284.1\|WP_042172660.1\|623236_625246_+\|hypothetical-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	1.56957e-09
NZ_CP009284.1\|WP_081947442.1\|629184_630162_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	3.92012e-96
NZ_CP009284.1\|WP_052418893.1\|625242_629061_+\|phospholipid-carrier-dependent-glycosyltransferase	gnl\|CDD\|374423	pfam16192, PMT_4TMC, C-terminal four TMM region of protein-O-mannosyltransferase. PMT_4TMC is the C-terminal four membrane-pass region of protein-O-mannosyltransferases and similar enzymes.	5.73969e-25

>NZ_CP009284.1|WP_052418893.1|625242_629061_+|phospholipid-carrier-dependent-glycosyltransferase
MKNLRTAAVFMFMLLMFVLPVTSIYAEGNLLQNPGFEDGEEGAPAGWTKDAWIAGDGAGILSVQSEEVHSGSKAAVIENFEPNHLKWIQTLTVTPGSYYKISGYIKVASIAGEGFGANIFPVGIGGGYPATTDTGGDWQYLEFIGQTGSEQTELAVGAALGGYANLIQGKAYFDDLAVEQLETLPEGAGFISLDTGAAAPADNSGTETVPHKVSPAKILLISAVFSVFFALIYNRGLRSNKLLGQPDIVYTRWLYVAFAGAFILRIWIGVTAQGYENDMNTFIAWGQRLVDRGPGGFYEKGYFADYPPGYLYVLYLLSAIRGLFGLTHGSAGEMLLFKMPAILSDLVLAGLIYKIGRKKLGGGMAMGLMLLYLFNPAVLMDSSAWGQADSFFMIFLLLSIMGAADKTFVRSAIFFAIAVLVKPQALIFTPVLMFAFYHHRAWKQLAYGALYGLGSFVLLAAPFFWNNGGFIGLIDLYKSTLSSYPYSTVNAFNLYALTGPMWSAMDVTWLGITYRVWGFVFILAAVAAAAYYSFRKDRKELSKSYFIAIVLIAVVFVLGTKMHERYIYPALILCLFSYMESRDRRFLTMFLGFTLTQYINVGYTLAHLNAGGNPPTDGIVIVTSIANLGLLAYTLYTGYMVYIRRQIKPLAPPVTDAEHYAADLALAEGIRPLESAGKSKFRLQRKDWIWMLAITAVYTVIALVNLGSTKAPETLWEPAASGESFYVDLGQSRQLENVKIFGGVGTGKFKLEFSETPDVWGSPLDVSEDVGNVFIWKSQPLNVAARYVKLTVTSPGFTLNEIAFYEQGGSKTPLPVAGVTPDAGAATKRGEPANLFDEQSLVPENSNFMNSTYFDEIYHARTAYEHFQGIVAYENTHPPLGKTLIGAGMELFGVNPFGWRIVGTLFGAAMLPLIYMMGLRLFGTTRYAALSAGLFALDFMHFTQTRISTIDVYGVFFIMLMFYFMQRYFTMNFYRVPLRKTLVPLFWSGLFFGIGVASKWIVLYGGAGLAIMLALSLFERYKEYKAAGRMLAEGKLGDQEIKTACRTADKSFWKNTIITLASCVGFFVIIPAVVYALSFIPVLSVTAEGYTIKGLIDAQKNMYNYHSQLVATHPFSSSWWEWPFMKRPVWFFSGGEGLPEGRVSSIVTMGNPLIWWTGIFAMLGAVWLTIRSKEKSLYMLWIAFFSQYVPWMLVPRETFLYHYFAMVPFIILAIVYVMKLLDSKVPGASKIRYAYVAAAAVLFIMFYPVLSGMQVSADYVNIMLRWFPSWVF
>NZ_CP009284.1|WP_042172660.1|623236_625246_+|hypothetical-protein
MSGILSRIFNSCKNNPWPLLLFVLGAIVRIVYIGSVPPGLNQDEASIGYDAYAILHYGIDRNGVHLPVHLIAWGSGQNALYAYLSMPFILLFGLTPLSVRALSVFMGLAGMFFFYIIMKRLFPAKAAGIAAMFFIAVNPWHIMMSRWALESNLLPTLILIAVYCLLRSVQSADSRWTYAYTAVLASSLYAYGTAYFFVPVFAAATAILLLYCKMLKVRTLLWNALLFVLLSLPILLFIVINHYNALQAVTTPLFTVPKLTTPRVEQISSVFGGQLLQTAAGNFREFLTVLWSGSDGLPWNSISWYGYAYPLALPFALLGLVVMLQAVRKRRRKEAGRVILLLWLLSAMLMAFITTVNINRINIVFYPLVMLSAAGFIWLYSKIKPAGILAAAAFAVMFGSFTIVYFRDYPGQIGPSFHESAGEAIRYASRNTGGNVYVTDDINMPYIYVLFYERINPSDYLDTVVYSNPGGAFQQVTEFGRYRFGKPAVLEENSAYVLSSRSGLPAAFNGDYTVREFANYVVLITGHYEGAESSQAVPEGSGLINGGFEEGPAGWEFSAGTGIAGNNPYSGTALAYLDAGADKTVSQILNGQPEPGEYTLSAMASAGGSGGKISLLVNGTMQAEAELTAGDTYQEIRLPAVTLNQGDQAEIIITGGNGWINIDEVRLKR
>NZ_CP009284.1|WP_042172658.1|621673_623074_+|NCS2-family-permease
MNRFFKLKENGTTVRTEIMAGITTFMAMAYILSVNPGTLTAFGRIDMGWYSVFLATALAAGIFTIAMGLFINFPVALAPGMGLNAYFASVVLASQTTEHEFTWQMGLTAVFISGLIFILLTVTRVRQILLTAIPDSLKHAITVGIGMFITIIGLKNSGLMTIGVEAGSDIPANKFTDVLSFETVIHMGSLENTSVQLVIIGLLLIAILMVLQVRGAILFGILGTTLVAILMGAVDFSSLSSPQTPWIPDFTQLNFMEFDWDGIMHTGIVSAIATFTFVELFDTFGTLVGTAERAGIMKNKEEGKRRVGNAMFVDAIAVTGGAMLGTSTTTAYVESAAGVAEGGRTGLTAVTTGVCFLLALFLAPVVALIPGSATAAALIVVGVLMAQSIREIDFQDMVYAIPAFLTFAIMPFTYNIANGISFGIVTYVILACVANIAGKKKYDIHWMMWVLAVLIIARYVFFGSAG
>NZ_CP009284.1|WP_042172656.1|621015_621219_-|helix-turn-helix-transcriptional-regulator
MNRVAEYRKLSGLSQLALSKEIGVARQTVNLIENDKYNPSLDLCIKLARALNTDLNTLFWEVNHHAE
>NZ_CP009284.1|WP_052418892.1|620507_621026_-|DUF3278-domain-containing-protein
MLNNLEKRMLKPFVGYLEERDEYQQGEIHKILASACMHAFYVTTALMLISLIVDTINGTFTFGTIALFIVNQFVAYYIQIRLKKTGIAETEYDAEADYERTILRLKKKFIFAGAQWGFTMLILMEFLLPALAGEKLEIHLFSILIWLLAGAAFGICTYFLQKRNIKMFKEKG
>NZ_CP009284.1|WP_042172655.1|618895_620434_+|glutamine-hydrolyzing-GMP-synthase
MNKPNEMIVVLDFGGQYNQLIARRIRDLGVYSELLPYNTPVEKIKELSPKGIVFSGGPSSVYAEDAPHVDPAVYELGLPIFGICYGMQLMAQQQGGKVERAAKREYGKADVDFQPGSVLAAGLDGSQTVWMSHGDHVVELPGGFKLDAGTESAPIAAMSNDEKKFYAVQFHPEVRHSVNGNEMISNFLYEVCGCEGNWTMESFIEDAIKDIRDKVGDKNVLCALSGGVDSSVVAMLIHRAIGDQLTCMFIDHGLLRKGEAESVMETFVGKFDINVIKIDARDRFLGKLAGVSDPEQKRKIIGNEFIYCFDEESAKLGDFAFLAQGTLYTDIVESGTATAQTIKSHHNVGGLPEDMKFSLIEPLNTLFKDEVRKLGEELGMPHAIVWRQPFPGPGLAIRVLGEVTEEKLQIVRDSDYILREEIAKAGLDREIWQYFTALPNMKSVGVMGDERTYSYTVGIRAVTSIDGMTADWARIPWDVLEKISVRIVNEVDNVNRIVYDITSKPPATIEWE
>NZ_CP009284.1|WP_156131067.1|615934_618703_+|DUF4129-domain-containing-protein
MVREYTAWIIRMRQNGTRRQKLMNFRGDLHWDRPPEGTAELTGPPSSGLGGERSGLRTSPVPIHRHNAEQTENSQTGSGDSAPLYYRLLFSLAIMGMFISWLMPLHQSVPAAETAELLELLMLAAAALLLWGSFRVPAAIQFSLQFVMIALTWYWACDRNEGPDWLSAYISGIPLDAARLITGRVSGLSEDSRLLILVLGWGLLVASVQQLALYRGSISLFTAVSAGYLLVLDIAFGINTTRYVVAASLLILWMQGLSGLLRLKEHSGRRSLPYYRWAAFTLLTVILLVAAAVTGGVLYGARPAAPLSLQPVMERLQHLAEGETPSGVEEAGAANTGTTGYGTGEGELGAPLTPGTAPVFTAFAGRPVYWRGESLAYYDGRRWIREGIMYEPLSLRGLPSEEMSAELTAAGQDSSRILDLRVELAAPATGGLPLFSAGAVADVGKVELADGSSLGYVLASPQKNRFRLPESSGPTAITAYEVTSLLPESSPALLRSLGTEDPGDIAGQYLQLPAALPGRINTLSAGLTAGAGNRYDAVTAVQSYLRSSYPYTLDTRIPPGAADFVDDFLFTAKQGYCVHFASAMTVLLRSSGIPARYVQGYGPGTPERGGGQPARFLITQADAHAWVEVYFPGAGWVPFDPTPGTAFAAAGPAAADAAALVPAPQEASARSAADALPALPQAGGTPAPPAAAAALVLAAAWRWRRSLALLPAALRGGSGGRERQLRAAALAWRGLAARYGPPPPGMTAREYAASLAIGDARLRAAVRQFVRQWEALAYGTSAPPPSPAVSARIAPPANAARTVSVARPPSPAVSARTAPPANAARTEPVAPPPSPAVSARVATPANAARTEPVAPPPSPAVSARIAPPANAARTEPVAPPPNPAVSARIAPPANAARTEPIAPPPGSAAFIGLCLTISFRLA
>NZ_CP009284.1|WP_052418891.1|614619_616032_+|DUF58-domain-containing-protein
MSSSSLIDQQTGKSSLPERSPDVTGLLFRRSRSVAAEWIRMLTVTIVLGGLYCWRGGASLLFLLTVSGLLMAGGFLLQAFGPRRFNIVRSITPVRPVAGDSLTVEVQVSFVTRLPLPWMIITDYWGGSWHRELLFPGFRRSFRYTYRLHRLPRGIYHLHGSRISWGDPAGLFTGESRLKGQENLKVLPRPLYIGTVRPESSRYTGEAMPKRGRGSSEAADIRNYVAGDPLNRIHWKSSASRGTLQSRVPEKEAAQMSCIVLANRAEEYEIPYSSLNPRSERNKSEPAFERAVSAAMGLMLSTERSSAYVQLFTGGWPEGMARHEGLGKIPGRVQELLTEISPSGTRSLSRLLEDASQHWIPGMTVAVITGRLEEEAARTIARFLVQGVKVELYYVWDQPAPLPGGAAAEMRQGPAAADRGPEEYKLRTAGTVSGSLARIGARVYCLDHPDAAERNKEAEAHEFPGRPTLG
>NZ_CP009284.1|WP_042172652.1|613048_614479_+|polysaccharide-deacetylase
MKGSNKSLIRRNAIRGLIAMAVMLCALTGWAGAQSLNERKANPLQAGAAVPVLSKNNLPADVMQDLSAPAVNPAAAVTAAPRAVQASGTGAVIAAEVQKANGKTDQKTDQKTDQKADQKTDQKTDQKTVYLTFDDGPSNVTPEVLEVLRDVGVKATFFVLGQQAKSHPELINAIWEQGHAIGNHTYNHNYHDLYSGFTEFWKQIKQTEEAVREITGIRPQLVRAPGGTYGHFDATYFELLKEAGYTVMDWNVDSGDSRRKGVPAAEIIRESLSLQASRVILLLHDGAGHAESAKALPQIIARYKAAGYRFGVLDAAQEPVQFRVSASAAAEERIKPSAAWIASNITPNAGLFGPGKPLILEVGKQEVKLDPGEYRIRKGQYVVPLRAVIERLGGRVGWDTVNRSGSVWWNGREVSADAGNKRLTLISGDGTHVTRESDVELIGSALWLPLRDLLEESGHPLLEVKVTAEERRVKAL
>NZ_CP009284.1|WP_042172649.1|612271_612940_-|DedA-family-protein
MEMLKWIQELFAAYGYNVLFFGLLLEFIALPFPGETTMAFAGFLSYTGRLDFLTLVVVAFAGTTVGMTITYFIGLKAGLPFIQRYGKWFLFSPAKLEKTQHWFERYGSFLISIGYFIPGVRHFTGYFAGIIALPFRKFALYAYGGALVWVIIFLGIGKVFGPQWMGIFHLFEVYALWIVSGVAALAALIAVFRYRRFLAVYVLRRKPELKLKTKLKEPSKER
>NZ_CP009284.1|WP_081947442.1|629184_630162_+|glycosyltransferase-family-2-protein
MKARYSVVVPMYNEEEVIQHTYERLKKVMDECGDSYELVFVNDGSRDRTAEIIRGISSRDANVKLVDFSRNFGHQVAITAGMDYAEGQAVVVIDADLQDPPEVILQMIARWKEGYEVVYAKRLKRHGETLFKKVTAKLFYRLLSSMTSVEIPTDTGDFRLIDRKVCDVLRGLKEKNRYVRGLVSWVGFRQTMVEYVREERFAGETKYPLKKMVRFALDGITSFSHKPLKIASYVGFFLAFSSFLYLFFILFQKLFTTWAVPGWTSIVGVNLLFNGIVLMLLGVIGEYIGRIYDESKDRPLYIVRETRGYEDGEYIDKREGIRNER
>NZ_CP009284.1|WP_042172662.1|630151_630553_+|GtrA-family-protein
MSGKKRNEGFIQFLKFNAVGLLNTLIDFALFTLLHSLGMMNAPAQVISYSAGTANSFFWNKKVTFRDRDAGKNGSDRLQLVRFIILNLTVLGISVLLMHLLTGSFGIQVLIAKVLVTGITVIINFFGSRMWVF
>NZ_CP009284.1|WP_042172664.1|630604_631255_+|class-D-sortase
MRKLSYLIILAGVLIMLYPKANEWYNDRQQAKLLEEAEQAYSELAPVTEPDLQKPYAEVTQLLAEESAQEEEAPPSEEPSDEIAVGGKITGIIEIDRIGLKLPVLEGATKANMKHAAAHMKETAPLGEAGNAAIAAHRSRTAGRLFNRLDEIKIGDTIRIKTSAEEYEYEVYDISIVEPTDVSVLNGNDKDKILTLITCDPLVNPTHRLIIHAKMT
>NZ_CP009284.1|WP_042172666.1|631627_632437_+|transglutaminase-domain-containing-protein
MKKFYFMLLTLFVVVTSVQTSTASAATADSSWLNTSKLDQGVVAVSYDVPADKRIKVMITKDSNSYTYNLYASQSTESFPLQQGNGTYKVSVLENTTGNKYKVVSSENVELNLSNANAVYLSSVQNVKWTSSDKAVLKAKQLTQGLTTDEAKVKAIYNYIVTNVKYDNTLAATVTQDYIPSNDNTLLTKKGICYDYASLFATMLRSEGIPTKLVMGNTSYVSTYHAWNEVLLNGKWVTIDTTVDAGLAKNSKDVGLTKVASKYSPAKFY
>NZ_CP009284.1|WP_081947443.1|638050_638836_+|hypothetical-protein
MCIKCKGAQKMSQVDPLLWIEKFFVQASDTDFRSKGKLSFLLDIMQRAADSAVNNLGLNMDKMLAAGMGWMVITMDVDISRLPLPNEALTVHTWSKGTKGALWQRDYRIFAEDGLEIASARSIWALVDIDKRKILRPSALPIAVEPYLEDSVGPLPQKVTIPAGVILQESYLYQVRYSGLDNNGHLNNARYVDICCDALTLEEWKGLKLTGLQITYAQEAKYGTDISILRTEWMKDGVYIRGQDSERVLFEAHLKLEKSTL
>NZ_CP009284.1|WP_042172672.1|638985_639570_+|sigma-70-family-RNA-polymerase-sigma-factor
MEHDNPGCQLNPNVIKEAISKVLAGERQFFATLITAYERQMYTYCYCILRSREEAEDAVQDIFVKVYQEIGRYEERVSFSAWLYKVAYHHCLDQLRKRKRRIRLLSFYTMQIVRSYHEPPDDSAVDRLFRDLNPDERGLLILRVVEQYSFDEIAQITGRSSVALRKKYERLRKKLVQQKANEGGCSHGEVAESN
>NZ_CP009284.1|WP_081947444.1|639487_640684_+|DUF4179-domain-containing-protein
MKGSGKSWSSKKRTKEAAVMEKWQNQTEQQIAEHIRLSIGKIQLPVDSYNEPIMNRIEQLEIKGGRRLKLLKKTLVAASLAVLLVIGTITAGFISPAWADTLKQFPVFSSVFEHTENAGLKLAAEKGLATSPNLSVTHDGVTLSITEVLYDGTRLAIGFERAGVMDERVMAEITNFYTHEFDQSTKGLLGLPVVTLPSGEPVSAGSSSTGGVYGQSNMILLELNELRNTAALGDEFKVNIRVPVAQIADPFEFQVTVNKVEGRIINLKPDQGASIGSFHYKVKSLDITPVTMRLIITSEGEVPVSAEQTGEYAPTSVFYELVDDLGNVTNSQMGYAKAKAVQHPILDNSYNIFPKVPKTITVRPYTFTLDSELNLLKDVNGERIKTYYKELETTIVIP
>NZ_CP009284.1|WP_042172678.1|640761_641661_-|AraC-family-transcriptional-regulator
MDNRQLIMTAIEHIEDNLHQPLSVRSLSLFTGYSIYHFIRLFQGVTGLTPGDYIARRKITEAVRHILCEPGRSLLDISLDYSFKDYETFVRTFKRLLHTTPTQIRQKRNLVLPLLLHRLYSHDLQRWTDQHTIPPQTVDLGEIKLQGVQVTLNNDPSVISSAWEELWSRLSTIPERKLPEKYYQLGQWTEDYEDNGIRFLCGCELNNTRSLASRSLAGQSLISPELPIHSLPPARYLKFQHRGRSADISATYKYIYGVFLPKTDYRLTLPYEFEYYGKDYLGPENPASTSEIYIPISSL
>NZ_CP009284.1|WP_052419280.1|641683_642112_-|tRNA-(N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase-TrmO
MYNVVPVGVVSGTQHNLQIEIEPGYRAALKGLEDFSHCQILWWIHEFADDMFRTTTEIEPPYDAPVTGVFASRSPVRPNPIGLSVAEIISVDTVEGIIEVGGLDAYPGTPVLDIKAYFPTTDRVRHVKVPAWASSWGEWVGE
>NZ_CP009284.1|WP_042172682.1|642264_644403_+|DNA-topoisomerase-III
MKILVLAEKPSVAREIARVMGCGNKQKSYIEGPKYVVTWALGHLVGLAEPEDYNSKFANWALEDLPILPEKAKLKVLRETSQQYKAVQQLMKRQDVGELIVATDAAREGELLARWIMNMAGWKKPFKRLWISSQTDKAIKEGFASLRPGRDFDRLYESARCRAEADWMIGLNVTRALTCKFGAPLSAGRVQTPSLGMIMDRENEITGFRSQEYELLTADFGSFQAGWRAQGGDGRIFDKEKAAALKDKLTGRSGRVNKVQKSEKSEPHPLAYDLTELQRDANRKFGFSAKQTSSVLQKLYEQHKLVTYPRTDSRYLTSDMTGTLKERLDSVAVGPYAALARPLLRKPLPITKRIVDDSRVSDHHAIIPTEQTVLLNQLSAEERKLYDLIVRRFISLFYPPARYDAVAVTVTVEGESFHVKGTTVKDAGWREVYGGDMSSDDEEENSADEPAAGSVKLPELREGEAVKVQRCIVRQGRTQPPKRYNEASLLTQMEKHGLGTPATRADIIEKLVSSDTIERQGNLLHPTGKGKQLIELVSAQLRTPELTARWEGELERIARGQGKPEPFLQGIRTMAQELVSGVKSSGAEYKPHNVSASHCPDCGTRMLEKKTKRGKLLVCPADDCGYTRAGEKKLSGRRCPQCHKKMELKEGKAGPYVQCLGCGITETMDKDHKHINKREQQKLVQQYSKQESTGSNLGDLLKAAMEAKAKGK

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Crispr_ID: NZ_CP009284_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009284_4

861411-861507

Orphan

Consensus_repeat	Method
AGCGTATGCTTTCGAAGCGAGTTTTGTACGA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP009284_4

>merge|NZ_CP009284|4|861411-861507|CRISPRCasFinder
AGCGTATGCTTTCGAAGCGAGTTTTGTACGAGGCGAAATCAATGGAGTGTATGCTCACAAAACTTAAGCGTATGCTTTCGAGGCGAGTTTTGTACGA

>NZ_CP009284|4|4|861411-861507|CRISPRCasFinder
AGCGTATGCTTTCGAAGCGAGTTTTGTACGA	GGCGAAATCAATGGAGTGTATGCTCACAAAACTTA
AGCGTATGCTTTCGAGGCGAGTTTTGTACGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009284.1\|WP_042172951.1\|844091_844700_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225753
NZ_CP009284.1\|WP_042172953.1\|845783_846536_-\|exonuclease-domain-containing-protein	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99836
NZ_CP009284.1\|WP_042172976.1\|869857_870676_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NZ_CP009284.1\|WP_042172954.1\|846721_847336_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042172980.1\|871499_872564_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP009284.1\|WP_042172961.1\|857992_858826_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP009284.1\|WP_042172974.1\|868875_869829_+\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|224868
NZ_CP009284.1\|WP_042172960.1\|856087_857968_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|225519
NZ_CP009284.1\|WP_042172978.1\|870680_871469_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NZ_CP009284.1\|WP_042172964.1\|859846_861196_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270452
NZ_CP009284.1\|WP_042172962.1\|858828_859722_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP009284.1\|WP_042172966.1\|861551_864212_+\|glycoside-hydrolase-family-2-protein	unknown	unknown	gnl\|CDD\|225789
NZ_CP009284.1\|WP_042172970.1\|867260_867605_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042182101.1\|847878_852876_+\|DUF4132-domain-containing-protein	unknown	unknown	gnl\|CDD\|379270
NZ_CP009284.1\|WP_042172968.1\|864733_866890_+\|alpha-galactosidase	unknown	unknown	gnl\|CDD\|225882
NZ_CP009284.1\|WP_042172955.1\|847433_847853_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042172952.1\|844789_845554_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377906
NZ_CP009284.1\|WP_042172972.1\|867787_868873_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270307
NZ_CP009284.1\|WP_042172984.1\|875606_876101_+\|CYTH-domain-containing-protein	unknown	unknown	gnl\|CDD\|143626
NZ_CP009284.1\|WP_042172982.1\|872586_874308_+\|adenine-deaminase	unknown	unknown	gnl\|CDD\|223933

Protein	Function_ID	Function_description	E-value
NZ_CP009284.1\|WP_042172951.1\|844091_844700_+\|hypothetical-protein	gnl\|CDD\|225753	COG3212, COG3212, Predicted membrane protein [Function unknown].	1.91823e-11
NZ_CP009284.1\|WP_042172953.1\|845783_846536_-\|exonuclease-domain-containing-protein	gnl\|CDD\|99836	cd06133, ERI-1_3'hExo_like, DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins. This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ERI-1 has been implicated in the degradation of small interfering RNAs (RNAi). 3'hExo participates in the degradation of histone mRNAs. Snp is a non-essential exonuclease that efficiently degrades structured RNA and DNA substrates as long as there is a minimum of 2 nucleotides in the 3' overhang to initiate degradation. Snp is not a functional homolog of either ERI-1 or 3'hExo.	2.05474e-47
NZ_CP009284.1\|WP_042172976.1\|869857_870676_+\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	3.80634e-73
NZ_CP009284.1\|WP_042172978.1\|870680_871469_+\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	7.42554e-67
NZ_CP009284.1\|WP_042172980.1\|871499_872564_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.79817e-143
NZ_CP009284.1\|WP_042172961.1\|857992_858826_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.23179e-56
NZ_CP009284.1\|WP_042172974.1\|868875_869829_+\|nucleoside-hydrolase	gnl\|CDD\|224868	COG1957, URH1, Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism].	2.09064e-107
NZ_CP009284.1\|WP_042172960.1\|856087_857968_-\|HAMP-domain-containing-protein	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	3.03591e-61
NZ_CP009284.1\|WP_042172964.1\|859846_861196_-\|extracellular-solute-binding-protein	gnl\|CDD\|270452	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold. This group represents the periplasmic component of an ABC transport system XBP1 that shows preference for xylo-oligosaccharides in the order of xylotriose > xylobiose > xylotetraose. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.99086e-41
NZ_CP009284.1\|WP_042172962.1\|858828_859722_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.30348e-77
NZ_CP009284.1\|WP_042172966.1\|861551_864212_+\|glycoside-hydrolase-family-2-protein	gnl\|CDD\|225789	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].	1.56352e-110
NZ_CP009284.1\|WP_042182101.1\|847878_852876_+\|DUF4132-domain-containing-protein	gnl\|CDD\|379270	pfam13569, DUF4132, Domain of unknown function (DUF4132). This domain might be involved in the biosynthesis of the molybdopterin cofactor in E.coli.	1.51703e-49
NZ_CP009284.1\|WP_042172968.1\|864733_866890_+\|alpha-galactosidase	gnl\|CDD\|225882	COG3345, GalA, Alpha-galactosidase [Carbohydrate transport and metabolism].	0
NZ_CP009284.1\|WP_042172952.1\|844789_845554_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|377906	pfam07739, TipAS, TipAS antibiotic-recognition domain. This domain is found at the C-terminus of some MerR family transcription factors. The domain has an alpha-helical globin-like fold. The family includes Mta a central regulator of multidrug resistance in Bacillus subtilis.	1.84246e-43
NZ_CP009284.1\|WP_042172972.1\|867787_868873_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270307	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic binding domain that serves as the primary high-affinity receptor of an uncharacterized ABC-type polyamine transporter from Rhodopseudomonas palustris Cga009 and related proteins from other bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.46189e-77
NZ_CP009284.1\|WP_042172984.1\|875606_876101_+\|CYTH-domain-containing-protein	gnl\|CDD\|143626	cd07761, CYTH-like_CthTTM-like, Clostridium thermocellum (Cth)TTM and similar proteins, a subgroup of the CYTH-like superfamily. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. Members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily have a unique active site located within an eight-stranded beta barrel.	1.21217e-27
NZ_CP009284.1\|WP_042172982.1\|872586_874308_+\|adenine-deaminase	gnl\|CDD\|223933	COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism].	8.27339e-162

>NZ_CP009284.1|WP_042172964.1|859846_861196_-|extracellular-solute-binding-protein
MRNKLFSLSFVIIMILSLSLTGCGSNNTNNNAATATDEPAATAAPANTGGDAAATTEPAAPSGADISGKITFLTNRTDMIGKEYDEYVKRFNEKYPNIKVEFEASQTDYNQQAKVRMASGELPDVMFIPTIPNSDLPKYFASLDDLGLTDQITFKDFKSYEGQLYGITTGNSTTGIVYNKKAFADAGITEIPKTWDEFLAACEKLKAAGVVPLASNFKDKWPLNDWVYSVPRIIDGDPNFPNEKLTSDTPFTMDNGYGKSLSLLRELNEKGYLEKDINSTNWEQSKKDIASGKFAMYYLGNWVINQVIGAGTTSDNVGFFPLPYDNSGTITAPLSPDFFYAVAKNSKNVDAAKAFVKWMIEDSGYEDFAGFISPLKGKESNLTQLKEFQATGVVLQEGTVDDAQVTEITNKAQLDLPAMAQEFVLAKDPQTVFDKWNKAWAKAKKDLGY
>NZ_CP009284.1|WP_042172962.1|858828_859722_-|sugar-ABC-transporter-permease
MFGTLSYNKQKMIIIIAFLTIPLLLLATFTYYPALKLIYYSFTNWDGYSPEKPWVGLDNYREVFGNPDIFKVFTHNFAYFVMGILQNIVAIYFAVVLSSKLRGRNAFRIMLFLPYIMNGVAVAFMFGYVFDTTNGSLNLFLNSIGLTGLGQTSWLGTEGLVNYSLASTGFWRFMGYNMVIYIASLQAIPKDIYEAAKIDGAGSFQTLWRITLPNMKPVIQLNLFLTVTGALEVFDLPFVLTKGGPAGASETYVQKVVDTAFAFNNYGLASAMSIILLFFVVIVLVVQQLVLSRGGDK
>NZ_CP009284.1|WP_042172961.1|857992_858826_-|carbohydrate-ABC-transporter-permease
MTHSKFRSVDFIKYVTLLIGVFVVLFPPYVVIINAFKSTDEFNSSSSMALPKSFLNFDNFIAVFQRGGLLSGFGNVLVIIIITLTLNILFGTMVAYVLGRFNFKLKPLVFGAYLVATIIPSITTQVATFGIIKSLGLYNTLGAPIVLYIGADVIQIILYLQFIRNIPFDLDESAMVEGASLFKIYRSIIFPLLTPATATLVILKTISIYNDMYIPYLYMPKQSLGVVTTILMRFQGVNSGEWNLICAAILLILLPTVILYFFLQRYIFEGVTSGAVK
>NZ_CP009284.1|WP_042172960.1|856087_857968_-|HAMP-domain-containing-protein
MVSYILSIPRRLWLFLANLPMERKLIVVFVFVLSLPITYVSYLSSRSTFHSVLQSSTKSAGQMAGNASDTIDRYIADLKRYTALPLYNTDVQFYLEQQNADWEKNTSMSMFLSYLIHTKEEMTAVYLVDKYGYVFYDRAPGINELFPAERMAQWRSLTEEAGVAPVVQGRHTIRVNSGEHREVFSVMRTVSSVSMLKPIGMIVFDIDIGLFKGIAEPVNAVTQGNTIIIDEHGGLVYGGITAESGGSGVTAAASAASDIRSYTSAAGSGREQQDIALLLPQTMGPEGHFQFRLEEQDYLAVYTVSQKTGWTTMVTIPLERILTPVQKTRNTLILTTLAIVAIALVAATFISYALTKPLKSLVRLMKQVQHGNLDVWLSPKYNDEIGMIGSHFNRMIIRVKDLLQEVALTEKRKQKADMRALQNQINPHFIYNTLESIRMLAEGSDDPRVAELTYLLGVQMRYGIVRSEEMVSIRHELDHVRNYLNLLQIRFPDKFRLDIDVPEECLPLPVLKLVFQPVVENAVFHGLEPKEGPGTVSITAWSEDGKTVFCVADDGVGMDSDTLRLLNSNLINSTDSEMFGIGLRNVNERLRLHYGSSCGLQVFSEPGRGTRVILRIEEPGDTRGEE
>NZ_CP009284.1|WP_042182101.1|847878_852876_+|DUF4132-domain-containing-protein
MNAEEREKQWYAEIQAKAQTLDAEVSGLASLIISVSRIQYIGGEEEECRECINVLKKLAGKAQQSLFEPLVATFRQLFSPYAAAVMQYITEHCTEYPYSRGYARRPFRSANPELHIFTFLSKMGSLILMDREGLPLSSYMQNAESLENGSDYSRRHRINLVLSDVIAYELDRTDGDMLERIRDIVYGDNQGASLSHEMIKGVFMSRRQEAVAMMGELLIAARLQEGLRQSLVERMDEGTLENNLYMLKIIIDNDFIRYSSVVRALGVWTGMGLEAQNQRVAKALIEDAYQALQDAGLREQWLSDANANRVYISLWATAVHEEAGLYDKIRELMATGQVYQKIIAQYLLANSQETELRLRLAREHLHEQDHELQYWVLLNYCYGYNRLWRPQKDEPKISLIRSPQLEDKEERRRDFALLKSLLLNPSRRETAGPSKVLDFIQVNYTSELPVRKMLYLIAYDMDSEWIDGLIELKDQLSSDLRGELLSCFLEYPLSPVQREFLFASLSDKSMKNRELALNEAMELTLTPQELLQAEALLKLKTGSLRQSVTLLLLSQPDSSLQESVTRLLQEKNSLQRLAGLEMATVLFEDEQRSAITGQVKPLIEAMDSPSAKERELLAKLERRNEYTAASGFGLFNPAETEEWLTKGPQPGDFKWDEVFGSSLEDIEGFLQGLDQLIHEYRDTEYEHEDYSDRKETLLLGTILKPLKWNSLWEKEQQENTSQLEQYPLHEVWSAYLQEQGWDAARLLELHFYLQLEDLNKTLNDYHGFYSSDMDYNELRKHKLLEGWRGEFAASVYPLQRISEVDRLLGKLKYGQHADTLIRAFFADSAKKEGFRIVDRALNALLAAMPEEKMAAEAPMLNVLAEPWLLMIRGRVTDQEDYKTMFRTLYTFDKMTPPAQNWWNVKLSLDDYLRAFEAEWIGENELYKELLASEGSKQHMQSLTSSLRNLAWIEDSVKITALRSRLIDRLMEIELARGDLPTEVTPLVMGLQRISGMEYFIRILTGLDKETFVRGYIYGYGRSITKKETFSHLLKNCHPREGEDTAMLGKMLKESGISEKRLLEAAMYAPQWLELVAEHLGWEGLRSAAWYFHAHINESFSAEKETVVAHYSPITPQDFNDGAFDGNWFLSAYNTLGEKRFALLYDCAKYISAGSNHRRSQLFADAALGKLELAAMKTSVVEKRNKDHLLSYSLIPLGKDREQDVRERYELIQRFLAESKAFGAQRRASEGLAARIALGNLARTAGYADVTRLMWDIEARKLDELGSYFEPHMLDEDTSVRLVIDDQGQSELEVISKGKQLKSVPARFKKHEYVEALKETRSELTGQYRRARVELERSMEAGSSFTLQEISSLSRNPVLAPLLRTLVLRSGTALGYFKPEAGTLAAPSGEEAVIAPEAELYIAHPLDLYTSGQWSAYQKDLFDRQIRQPFKQVFRELYLPNADELASGTVSGRYAGHQVQPRKTVALLRERQWTVSYEEGLQKVYYGANLIVRLYAMADWFSPADTEAPALESVEFFDRKTYKNVPLAQVPPLIFSEVMRDVDLVVSVAHVGGVDPEASLTTIEMRRVIVNESLRLLKIGNVRLDGNYARIDGKLGEYAVHLGSGQVYKQASGALHIIPVHSQHRGRLFLPFLDEDPRTAEILSKVVLLAEDTKIKDPSILSQLRG
>NZ_CP009284.1|WP_042172955.1|847433_847853_+|hypothetical-protein
MLLYVTVKSVGKRKPVLGRRELVLQQTPGSLEELITAIVALQVQELSEKQGRGELIPFLTGDAINNQRVSGKIGFGTVYNDKLPELGTAVEAALLAFEDGLYKVFLREEACERLQEPLVLNEGDELVFIRFTMLAGSLW
>NZ_CP009284.1|WP_042172954.1|846721_847336_+|hypothetical-protein
MLPSSIYWIGGSACAGKSTLAGMYAEKHGLQLYACDGRFDEHLQRVTAEQQPAMSRISGLTMNEVFLTRDVKEQLDTYTACFQEDFSFVLDDLACMGEAPVVVEGNQLLPALVAPLLRQADRAIWIIPAEQFQLEHYSKRTWIQGILQRTDESEQAFRNWMKRDALFAEKVKQEALRLNLPLMEVDGRTSVQDNFERIERCFLL
>NZ_CP009284.1|WP_042172953.1|845783_846536_-|exonuclease-domain-containing-protein
MDYIILDIEFNGRKFASEHPMEVIEIGAVRLDASLQFKDEFTALIKPIYFSTLNSFIKKKTGIPQEDIDVASRFPKVITAFRSWLDQSPDGVLLLTWGGEDMKRIIQDVRMHKMDESYWMEATYFDLLKGLLRARGLTNDISVEGAMALLGLEPSGSAHRALDDARMTSEIFRAVFEELDFSRSQHFVDTFSNARERKTVKIAIKAMTSQKIVPTWELVAEHYFQSEGALADPRKVAELQAYFAAQLGKK
>NZ_CP009284.1|WP_042172952.1|844789_845554_-|MerR-family-transcriptional-regulator
MEYTVQKLGAMAGISTRTLRYYDELGLLRPARINSSGYRIYGQAEVNLLQQILFYRELGLTLEAIRDIVTSPSFDGSRALQEHHEKLLQRRQQLDVLIANVEQTLAESEGRITMSNEAKFEGFKQKLIQENEQKYGQEIREKYGEEAVEKSNRMVKNMTEEQYAALQQLEADMFAALEQAMEEGDSASELAQKAAGLHRQWLSFYWDTYTKEAHAGVAQMYVDDERFTAYYDKRRPGLAEFLRDAVHVYTGAKQ
>NZ_CP009284.1|WP_042172951.1|844091_844700_+|hypothetical-protein
MKKQLLSSVAAAAIILGGTYGINEIRSGTAAAAPAVQQSQSKTLIGIAKAEAIALKSAPGQVESIDLEKKLSGTYYEVDIRQTNKEVDVRVDAYTGKVLSVRQDTDNDDDYDDDNYLSDAAASASGTQLITAAKASEAALAAVKGKVTDVDLDRDNGTAVYEVEIRNGRISTEVGVDAYTGKVLYKDVDSDDDDDDNDGYDD
>NZ_CP009284.1|WP_042172966.1|861551_864212_+|glycoside-hydrolase-family-2-protein
MTHKQLVLDNWEFRASGDESWLPAAVPGTVHTDLLRSGLIDQPFYGTNEHRLQWIDKKDWEYRTTLQLDEGWESLAVTELNFAGLDTYADVYVNNVHALSADNMFLAWTVDVKGLLRAGENEILVKFRSVVTEDLPKLEQLGYDLPAPNDQSELGGLEEKRISVFARKAPYHYGWDWGPRFLTSGIWREAVLTGRNAAAIADVYIRQDEVKEASARLTAIVEVDAPDSWAGTLRMTVEGQEWTREVTLEPGKGVVELDLVIDQPRLWWCNGLGAPELTTFRAELLENGAVLADAEVRTGLREIKLIRQPDAKGASFKFELNGVPVFAKGANHIPNDSFITEVSEERYRHEIASAAESNMNMLRVWGGGFYEEEVFYRLCDEYGLLVWQDFMFACSMYPGDEVFLENVRKEAEYNVRRLRNHPCIALWCGNNEIDSAWAQFEENKGWGWKEKLSGEVRETLWTAYEEIFHRILPEAVTAHHPGIDYWPSSPLRELTNDADQHSVRIAGDGDVHYWGVWHGIEPFENYNVKVGRFMSEYGFQSFPELKSVLTYAEEKDMELESEVMLAHQKNGRGNQIIKEYMDIYLPEAKDFKSFLYMSQILQAEAMRMAIESHRRNKPYCMGTLYWQMNDCWPVASWAGMDYYGRWKALQYTARRSFNDVMLSVEVTDGDNVQVHAVSDLPGALAGALVLRLHAFSGAVLKEWKQSVQLAADSSAVVFTVPLAELMAGLDAKQVVLAASLLAEDGTLLERKEHYFAAAKELTLEQPVLTVAEVPGSGGLSFTVSTDVLARGVYLTAEQEGIFSDNYFDLLPGQVKTVQFLRRRADAAAGAGMETGAGAGVETVETGAKAGAGAGVATGVKAGAGVPYFVPAAPQGLEVRSMADYVN
>NZ_CP009284.1|WP_042172968.1|864733_866890_+|alpha-galactosidase
MAIWVQEDKGIFHLQSKGMSYIIGLYNNYPMHVYWGKKLRHEGNLDGLPHLGVGTALDRLPQEYPQYGTGDYRVPAYQVKLEDGTRITELQYTGYRVLAGKPELAGLPSVYVESPEEADTLEITLRDDYASLNVILRYTVYRDTDVIARSVELVNDGQAPVDLLRALSASVDFPEDGQFDLIYLSGGWSREGNLTRRRLEQGTTALQSRRGMSSHQHNPFAALAKPGTDEHQGEVYGFSLVYSGGFAIEAEVDAFSHTRLGIGLNPFDFSWRLAPGESFQTPEAVMVYSAEGLGGMSRTYHRLYRTRLVRGTFRDKERPILVNNWEATYFNFNADKLVDIAAEGSKLGIELFVLDDGWFGKRDADNSSLGDWTEDLRKLPGGLADVAKRVNDLGMQFGLWVEPEMISPDSDLYRAHPDWCLHVPGRRRTEARWQLVLDLTRAEVRDYVYNALSKIFSSVPIAYVKWDMNRNLTEIGSAELPAERQAETAHRYVLGLYELIDRLTGDFPHILFESCSSGGGRFDPGMLYYMPQTWTSDDTDAAERLKIQYGTSLVYPISAMGAHVSAVPNHQVGRVTPLSFRGDVAMSGNFGYELDLTKFTDEEKELVKQQVANYKEIRSLVQQGNLYRLQSPFEGNETAWMFVSDDQREALVYYFRVMAVPYPARRTLKVRGLNPDLDYTVLDSGEVFGGDRLMQAGLALPDIQRDYVSGCFHLKAQN
>NZ_CP009284.1|WP_042172970.1|867260_867605_+|hypothetical-protein
MAELENSEQKKKMCQIYNEISKELFGFGTTLLRVSVDQRVITFHAKHRRSPRSTALEGEAPELKQEVDFRMSLLFKKRFKERLEEEMGLTIEVLLRDYDAPTQWAFTNMILAGE
>NZ_CP009284.1|WP_042172972.1|867787_868873_+|ABC-transporter-substrate-binding-protein
MKKIMTTGLALALTSMLAACGANNAATNNTGTDNAATGNTASGEPAELVISTWGFSEDFFKEAVYAPFEKEHNVKIVVEIGNNAERLNKIRQGSSDVDVVYLSDYYAQQAINEGLFDTIDSSKIPNLQNIYDIAKAPLGAEYGPAYTIGRLGIAYNPALTSGEVTAWSDLWNKFDKNLAMPAITATAGPMVVDAASLAAGNADFNEDTAFTQLKELDSNVVKYYSQTSEYVNMFGQEEIAGGPIMEMYFKDLQAAVPDAKFVAPSEGAYAVMNTVNVVKGSDNKELAEAFINWQLSEEVQDASAKAKVDSPVNMNVMLTPEEAVGVTYGADVIGQLRKLDMSFVNQHITEWTDRFNREIGG
>NZ_CP009284.1|WP_042172974.1|868875_869829_+|nucleoside-hydrolase
MTARKKVILDVDTGVDDALAIMLAVSSRQLDILGITTVSGNVSLDQATLNTCKILELLGVSGQIPVFRGADQPLVRDSVFEHRVHGSDGIGGALAGMTVTKQAEAERAEDFIIRQVLAQPGEVTLIMTAPLTNLARALHKCPELTQHAAEVIVMGGVVQGFGNITPTAEYNMYVDPEAAKLVLAAGFPRLTLVGLDVTRRALLSADDIARLQNPAIRDYVEKSTADYRTRYFERNGVQACALHDPLAVGVALNRSFVTVHDYHVDVETRSDLCDGQTVCDFQNRLGKPVNAGVCLEVDAPAFLECFINSLNRLEPRV
>NZ_CP009284.1|WP_042172976.1|869857_870676_+|ABC-transporter-permease
MNKKALYLLLPGLLFLAAFMLVPITLTIASTFVQDGKLTLEGYLHFFRDGYFNRILLTTLRVSVVTTLVCMLLGYPAAYYISRSSARKKSILLALSIFPLLTSPVVRSFSWMIILGKKGLINSFLVNIGLIDKPLDILYTPVAMMIGLVHLFLPLIIITLLGVMENLDHELVRAARSLGASPFAAFRKITFPLTVPGLIIGGILVFVGSLTAYTTPALLGGKERVVSTFLYQNAMTLNDWQAASVIAVIMIVITFVVVGLMNAWANRLNPKG
>NZ_CP009284.1|WP_042172978.1|870680_871469_+|ABC-transporter-permease
MKEGNRVLSLYTLLVFIFLLGPLVIISITSFEPGTVLKFPPEGFSLKWYRNIFEVSAFMDTFKTSIIISLLGNLLALLLGVPAAYALSRYRFRGRDTLNAIFLSPVLIPGIVLGFTLLRYLIVVYGLPIVAGLLIGHTVIMLPFIIRVIASSLENFDFAVEEAAQSLGASRLYTFFKIVLPNIRSGILAAILIAFLESFNNVDISVFMTGPGISTLPIQMLTYVQNYFDPTIAAISVILMVLTAALMFVIERLMGFAYFTKR
>NZ_CP009284.1|WP_042172980.1|871499_872564_+|ABC-transporter-ATP-binding-protein
MSLLSLEQVSVAYDNRLILEDFNLSLAKGQLLSLLGPSGCGKTTTLRLIAGFLNAEAGAFMFGGKDYTKVPVEKRNFGFVFQSYALFPHLSVFDNVAFGLRLRKLKEAEVKKRVTRMLEIVSLGGFEKRLPAALSGGQRQRVAIARALVIEPDLLLFDEPLSNLDANLRVNMRVEIRRIQQELGITTVYVSHDQEECFSISDQVAVMNNGKIEQLDKPSAIFKYPASEFVARFIGFGNFIAFDGRNDEGSDIELSRGALKFQAAKRPGGLGNTGLLGAIRPDDLQLFAASPEPGTASNILPGTVQISTYLGRSYQYQVETELGVFTVNQEMGQPFVQGQQVTVYFPKEKLVLVQ
>NZ_CP009284.1|WP_042172982.1|872586_874308_+|adenine-deaminase
MITDQLIMNAKVYNSYYKRFETANVAVKDGRFLYIGQLGAETFAARETIDAEGQYLVPGLIDIHLHIESTMITPETFSYGILQHGVTTIVPEPHEMANVFGVEGVHEMIRASKDCLVDMFYAIPSSVPATPLETTGGSIEIADIDELMATEQMICLGEVMNFVDVIRDPNCKSNQILQHVRSKYPGLVIEGHTPKLLDLDLHQLIFAGIDSDHTHQSIEGLTARIAAGMFIEIQEKSMTPEVVDYLIQHLVSEHFCFVTDDVMTDSLAATGHLDHLVRKAIAMGMAPEAAVYAATYTPAKRMKLDDRGVIAPNKTADYLLLSDLSSFTIEAVYKRGAQVWDRSRPQAQPEPAPRFPAHFYKSVQLAPLSAGDFAVRPELPDGRYGARVMTVNNVSTFTEEKHVEAGVKDGLLQWQDTGCGLIATFERYGKTGGRAYGLIGGDTIKRGAIATTYSHDNHNLLVVGHNAEDMALAANTVIAEQGGFCVVCDGVVLALLALPVGGILTEAPLAETAERVLGLRTAMESLGYNHYNPIMSISTHSLPVSPALKITDYGLIDVVAGKVVPLLFPLGEA
>NZ_CP009284.1|WP_042172984.1|875606_876101_+|CYTH-domain-containing-protein
MSMEIELKFLLPEYPEQLIEGGELKVMTRHSIDQTYLAIEDGQELRVRKITDLDSGEITFTHTFKDGKGIRRKEIEYNISEGLYNQMIEAVKAVPLVKTRTTAVWNGITVEIDVYTQLQLTVIEVEFDSLEEAESFSAPEWFGQDVSVEKKYSNKIVWKELQKK

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Crispr_ID: NZ_CP009284_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009284_5

2663624-2663861

Orphan

Consensus_repeat	Method
GCGGCGGCTACAAAGGTAACCGCGA	CRISPRCasFinder

3 spacers

DEDDh

The CRISPR arrays of NZ_CP009284_5

>merge|NZ_CP009284|5|2663624-2663861|CRISPRCasFinder
GCGGCGGCAAGAATGATATCCGCAGCGGACGTAAGCCAAACGGCGGCTATGGCGGCAACCGTTCCGGCGGAAGCGGTGGCGGCTATCGCGGAAACCGTGAAGGCGGCAACCGTGAAGGCGGAAGCTACGGCGGCGGCTACAAAGGTAACCGCGATAACGCAGGCGGCACAACTCGCGGCGGTTACAGCAGCGGCTATGGCGGCAACAGCAGCAGCGGCGGCTACAAAGGTAACCGTGA

>NZ_CP009284|5|5|2663624-2663861|CRISPRCasFinder
GCGGCGGCAAGAATGATATCCGCAG	CGGACGTAAGCCAAACGGCGGCTATGGCGGCAACCGTTCCGGCGGAAGCG
GTGGCGGCTATCGCGGAAACCGTGA	AGGCGGCAACCGTGAAGGCGGAAGCTACG
GCGGCGGCTACAAAGGTAACCGCGA	TAACGCAGGCGGCACAACTCGCGGCGGTTACAGCAGCGGCTATGGCGGCAACAGCAGCA
GCGGCGGCTACAAAGGTAACCGTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009284.1\|WP_042175298.1\|2657835_2659209_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|234981
NZ_CP009284.1\|WP_081947575.1\|2654079_2655390_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340893
NZ_CP009284.1\|WP_156131246.1\|2655647_2656676_+\|DUF2600-family-protein	unknown	unknown	gnl\|CDD\|378492
NZ_CP009284.1\|WP_042175299.1\|2659323_2660553_-\|putative-glycoside-hydrolase	unknown	unknown	gnl\|CDD\|379070
NZ_CP009284.1\|WP_042175297.1\|2656741_2657713_+\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
NZ_CP009284.1\|WP_156131106.1\|2661146_2661980_-\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_CP009284.1\|WP_042175313.1\|2668271_2668937_-\|zinc-metallopeptidase	unknown	unknown	gnl\|CDD\|377289
NZ_CP009284.1\|WP_042175314.1\|2668970_2669402_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133406
NZ_CP009284.1\|WP_039878584.1\|2660792_2660981_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042175304.1\|2664156_2665011_+\|DUF624-domain-containing-protein	unknown	unknown	gnl\|CDD\|227865
NZ_CP009284.1\|WP_042175312.1\|2667315_2668227_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176125
NZ_CP009284.1\|WP_042182485.1\|2651143_2652934_-\|oligoendopeptidase-F	unknown	unknown	gnl\|CDD\|341071
NZ_CP009284.1\|WP_042182491.1\|2671361_2672435_+\|signal-transduction-protein	unknown	unknown	gnl\|CDD\|225457
NZ_CP009284.1\|WP_042175318.1\|2672431_2673181_+\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236085
NZ_CP009284.1\|WP_039872008.1\|2653310_2653544_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_039872022.1\|2665510_2665900_+\|DUF1499-domain-containing-protein	unknown	unknown	gnl\|CDD\|377828
NZ_CP009284.1\|WP_042175308.1\|2666045_2666564_-\|thiol-peroxidase	unknown	unknown	gnl\|CDD\|179055
NZ_CP009284.1\|WP_019911834.1\|2653715_2653913_+\|cold-shock-domain-containing-protein	unknown	unknown	gnl\|CDD\|278729
NZ_CP009284.1\|WP_042175316.1\|2669922_2671314_+\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
NZ_CP009284.1\|WP_042175310.1\|2666675_2667302_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759

Protein	Function_ID	Function_description	E-value
NZ_CP009284.1\|WP_042175298.1\|2657835_2659209_-\|MATE-family-efflux-transporter	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP009284.1\|WP_081947575.1\|2654079_2655390_-\|MFS-transporter	gnl\|CDD\|340893	cd17335, MFS_MFSD6, Major facilitator superfamily domain-containing protein 6. Human Major facilitator superfamily domain-containing protein 6 (MFSD6) is also called macrophage MHC class I receptor 2 homolog (MMR2). It has been postulated as a possible receptor for human leukocyte antigen (HLA)-B62. MFSD6 is conserved through evolution and appeared before bilateral animals. It belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.45699e-57
NZ_CP009284.1\|WP_156131246.1\|2655647_2656676_+\|DUF2600-family-protein	gnl\|CDD\|378492	pfam10776, DUF2600, Protein of unknown function (DUF2600). This is a bacterial family of proteins. Some members in the family are annotated as YtpB however currently no function is known.	0
NZ_CP009284.1\|WP_042175299.1\|2659323_2660553_-\|putative-glycoside-hydrolase	gnl\|CDD\|379070	pfam13200, DUF4015, Putative glycosyl hydrolase domain. This domain is related to other known glycosyl hydrolases suggesting this domain is also involved in carbohydrate break down.	1.48755e-162
NZ_CP009284.1\|WP_042175297.1\|2656741_2657713_+\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
NZ_CP009284.1\|WP_156131106.1\|2661146_2661980_-\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	1.27421e-72
NZ_CP009284.1\|WP_042175313.1\|2668271_2668937_-\|zinc-metallopeptidase	gnl\|CDD\|377289	pfam04298, Zn_peptidase_2, Putative neutral zinc metallopeptidase. Zinc metallopeptidase zinc binding regions have been predicted in some family members by a pattern match (Prosite:PS00142), of the characteristic HEXXH motif.	3.51536e-119
NZ_CP009284.1\|WP_042175314.1\|2668970_2669402_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133406	cd04779, HTH_MerR-like_sg4, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	2.80869e-21
NZ_CP009284.1\|WP_042175304.1\|2664156_2665011_+\|DUF624-domain-containing-protein	gnl\|CDD\|227865	COG5578, COG5578, Predicted integral membrane protein [Function unknown].	1.0795e-28
NZ_CP009284.1\|WP_042175312.1\|2667315_2668227_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176125	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold. GltC, a member of the LysR family of bacterial transcriptional factors, activates the expression of gltA gene of glutamate synthase operon and is essential for cell growth in the absence of glutamate. Glutamate synthase is a heterodimeric protein that encoded by gltA and gltB, whose expression is subject to nutritional regulation. GltC also negatively auto-regulates its own expression. This substrate-binding domain has strong homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.45811e-84
NZ_CP009284.1\|WP_042182485.1\|2651143_2652934_-\|oligoendopeptidase-F	gnl\|CDD\|341071	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF). Peptidase family M3B oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid. This PepF family includes Streptococcus agalactiae PepB, a group B streptococcal oligopeptidase which has been shown to degrade a variety of bioactive peptides as well as the synthetic collagen-like substrate N-(3-[2-furyl]acryloyl)-Leu-Gly- Pro-Ala in vitro.	0
NZ_CP009284.1\|WP_042182491.1\|2671361_2672435_+\|signal-transduction-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	4.96849e-47
NZ_CP009284.1\|WP_042175318.1\|2672431_2673181_+\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|236085	PRK07740, PRK07740, hypothetical protein; Provisional.	6.93309e-115
NZ_CP009284.1\|WP_039872022.1\|2665510_2665900_+\|DUF1499-domain-containing-protein	gnl\|CDD\|377828	pfam07386, DUF1499, Protein of unknown function (DUF1499). This family consists of several hypothetical bacterial and plant proteins of around 125 residues in length. The function of this family is unknown.	1.91203e-05
NZ_CP009284.1\|WP_042175308.1\|2666045_2666564_-\|thiol-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	7.69455e-88
NZ_CP009284.1\|WP_019911834.1\|2653715_2653913_+\|cold-shock-domain-containing-protein	gnl\|CDD\|278729	pfam00313, CSD, 'Cold-shock' DNA-binding domain.	4.6922e-32
NZ_CP009284.1\|WP_042175316.1\|2669922_2671314_+\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	6.42872e-131
NZ_CP009284.1\|WP_042175310.1\|2666675_2667302_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	4.38913e-26

>NZ_CP009284.1|WP_156131106.1|2661146_2661980_-|YitT-family-protein
MLKLRQIGSCLAVIFGSAMIACGFNLFLIPHRLLSGGVSGLAMLVGYFTPFNISLLYLLFNIPLLVAGWFQLGRRFIILSILSVGSTTWLMTLIPEFTVTSDMLLASVFGGVLVGVGAGISFRMGGSSGGFDILGSIITRYRDFPIGNVLVGLNGLVILAAAYFDNNWNLALASMVSIYVTGKVVDLIHVSHIKVTVYIVTNRTEELLNHLLPLQRGVTKIKTEGAYSHVERDMLMTVTTRYELAELRRIIKTSDPQAFVNIVETVGVMGSFRKRSN
>NZ_CP009284.1|WP_039878584.1|2660792_2660981_-|hypothetical-protein
METVKLSAIVMRWYPDMMPFLKQDELNSVIVLRDGLSILEPADAMDIIHYSICEHQNPAYLQ
>NZ_CP009284.1|WP_042175299.1|2659323_2660553_-|putative-glycoside-hydrolase
MNITWALLMMALGGVGVQHTGHEVDVSAALQSAANPPITAGQAGNSGGDTSAGNPSASPAPSATQGAADSALHTDPQPDAPKVKGIYVTAYSAGGERMEQLLALLDKTELNSMVIDIKDDAGYITYKTDNAELQEMGTPQKFIGDINKLMTRLKEHDVYPIARIVVFKDSVLAKKHPELSFVNSDGSVWKNKGGDSFVNPYNEDVWKYNVDIAKEAAKLGFKEIQFDYVRFPEGFEKRADSLKYTKSDRPRVEIIADFVKYAKAELAPLGVRVSVDIFGYAASVPAAEGIGQDFVKISKNVDVISPMVYPSHYSTGWFDVKDPDKDPYATIKGSMVDTHKKLDPLGSYKPVIRPWIQDFTASWLGSGHFVKYGKQQVEDQIRALKDENVDEFLLWNANNRYTSDVDYEQ
>NZ_CP009284.1|WP_042175298.1|2657835_2659209_-|MATE-family-efflux-transporter
MKQTHSLSKKAGQFVHILFPILITQIALSAITFFDTNMSGKFSTNDLAGVAIGTSLWIPVQTGLSGILMGITPIVSHLLGSRKDKDVAYQVTQGLWLSLLISLLVLAVGSIVLSPVLNFMNLEPQVRDIAFRFLCAISFGIIPLFGYTVLRSTIDALGQTRISMLITLIALPVNVGLNYLLIFGNFGFPRMGGVGAGVASAITYWVIFAIALHFVYRFEPFKSLQLFRKFYGISLSSFKELLKIGVPIGFSIFFETAVFSAVTLLMSRFDTVTIAAHQAAINFASTLYMIPLSICMSLTILIGFETGSGRLKDARQYSIMGIASAAALSLVTALVLLFAGHHVAGLYSDDSQVIELIQHFLIYAIFFQISDAIATPTQGVLRGYKDVNPAFIICFIAYWVIGLPTGYLLATYTDMGAYGYWIGLIAGLAIGAILLLGRLVKVQRSFSVRRDSEITGA
>NZ_CP009284.1|WP_042175297.1|2656741_2657713_+|6-phosphofructokinase
MSNVKKIAVLTSGGDSQGMNAAVRAVVRSAIFYGIEVYGIQRGYQGLLNRDIFPMDLRSVGDIIQRGGTILQSARCLEFIKPEGQQKGADILNEMGIDGLVVIGGDGSYQGANKLSKLGIKTMALPGTIDNDISFTDYTIGFDTAVGVVVDAINKLRDTMSSHERSSIVEVMGRHCGDIALHAGLASGAETILVPEMPYDLNEVADRMKDNFTRGKRHSIVIVAEGVGKGEDVAQALKDRHASLDARVTVLGHIQRGGTPTPADRNLASRLGDFAVRKLIEGESAKACGIIKGELTITDIDTVVNTKKGFDTELYELASRLSQ
>NZ_CP009284.1|WP_156131246.1|2655647_2656676_+|DUF2600-family-protein
MSRVYKYVLPEVRECLHAWRQDAEGIPDPELRKQALASIETKQFHCEGGGIYAAGNLSMRHILIPLIVAYQTISDYLDNLCDRSTSLDPADFRLLHQSMLDAITPGAEPVNYYALRSEQNDGGYLHRLVRKCQEMTALLPGYAAAAEEIYDLAVLYTDLQVYKHIRPELREAALKEWWAAEGKRAPHLEWNEFAAATGSTLGVFMLFLSACDPRLDKSKAASIRAAYFPHVCGLHIMLDYLIDQDEDRAGGDLNFCNYYDNTDTMLNRIASIVEWARKDVRSLPENSMHRMVIEGLLALYLSDPKVSEQREVRTVSKRLMKRSPLTRLFFFVNSRWIRKHMY
>NZ_CP009284.1|WP_081947575.1|2654079_2655390_-|MFS-transporter
MESGRTGGQYSDQNWLRSFIFTLFGTSVLVVSYFPLFYTHLGFSSTQVGLLYSLGPLISILSNLFWSMMSDRLGTIKKIMAILLAGQLVTAILLARATDFSMVMLIISLFYFFYYPVFPLADTMAIKVAQRHGRNFITIRVFGSLGYSFFALTIGYVLRALGSSYSIGVCIVIIVSALLLTIGLKDVKPAAEKAGGTPSSGKTPGQSGGLKEIMLQKEVLWFFGCVFILALGHRMNEAFLTLSLKSMNAGDDLIGWALLASALSEIPVFFLLSKHGERFKELPLLAFASLMYGLRFLLMSQAVQPGAIIAIQALHSISFGVFFVTAIRYITRIIPDHLRATGLALFTVVWSSASGLLSGTFGGLIYEDAGRSTFYLVATMFSVLAFIGFFVKHLLDIGGPSRRYFRKKTLPAVPPEMESAIPSPPAEAASSHKATL
>NZ_CP009284.1|WP_019911834.1|2653715_2653913_+|cold-shock-domain-containing-protein
MKGTVKWFNAEKGYGFLQVEGGEDVFVHFSAIQGDGFKTLDEGQAVEFDITDGNRGPQAANVVKL
>NZ_CP009284.1|WP_039872008.1|2653310_2653544_-|hypothetical-protein
MIKKHEIYKTDKWNMMTVEVQGRYIILREISDQWGEETHTFMSRPAMMEWVNNRFNKESYKDNEEEYKNIIAAFKQV
>NZ_CP009284.1|WP_042182485.1|2651143_2652934_-|oligoendopeptidase-F
MDPLLKRSEVPAENRWKLEDMFASQDQWDKEYNEVKALIKKASAFQGKLDSADELKACFELDDELSQLTERLYVYAHMRQDEDTAAPTYQALTQKAKKLSVEAGEALSFVTPEILSLPVEKLDQFIADPSLSAYTFTLTEMKREKAHVLTKAEEALLAQVGNISQAPQNIFSMLNNADLKFPKIKNEEGKEVELTHGSYIQFLESPDREVRKNAFKAVYETYAKQKNTIAATLSANVNKNVFYSRVRKYPSVLEMSLYGDNIPKEVYTNLIDTIHESLPLMHRYMKLRQKLLGVDELHMYDLFAPLVDEYKLDITFEEAKKITKEGLKPLGGDYLNVLQEGYDNGWIDIYENESKRTGAYSWGAYGTHPYVLLNHNDNLNSMFTLAHEMGHALHSYYSDNALKYRDAQYTIFLAEVASTTNEALLMDYLLNKSTDPKEKMYLLTYYADQFRTTVFRQTMFAEFEKIIHQRAEEGESLTPQDLSAVYYDLNVKYYGADMVVDKDIEMEWARIPHFYNSFYVYKYATGFSAATSFSKQILEEGKPAVDRYLGFLKSGGSDYSINILAKAGVDMSTPEPIREAMSVFESVIEQMEQLTK
>NZ_CP009284.1|WP_042175304.1|2664156_2665011_+|DUF624-domain-containing-protein
MEFKGAMGGLYRITEWISRIAFSNILWGICSIPFLFMVVMKMIMYGSGQGGPNEQLTLNWVIGILAPFTVFPATSALFNVVRKWVMGNTDVSTFRTFFQGYKENYLKSMLGGLIYTVLFVVMYVDVTVYMTQMANFRIVGILMLVLMIILFVSMFNFFSIVVHYQMSFKEVIKNSVLLTIARPIRVFSTLIGSAVLAYIGLKYPVLYVICIPTLVAMLAFFNFFATYNKLQLQVEKKKQEELEAQEAAEKEAAERLQADYDDDDDDDDDDDYDDKDTSKSQKRI
>NZ_CP009284.1|WP_039872022.1|2665510_2665900_+|DUF1499-domain-containing-protein
MSLKRTLVGIFRSHDGTSDRAKDPALKTRYYTLSKDKAWDEVSSTLKKVPGYRVLHEVQSVGEITLEKRTGFGRTLDITVSVLNTSPVRCGIDIYSASRGSLGDLGANYRVIQRLYDSLDKKLGKYKTD
>NZ_CP009284.1|WP_042175308.1|2666045_2666564_-|thiol-peroxidase
MTQERTGVATFKGNPITLVGPELKAGDSAPDFTVSKNLLENASLSDYAGKIKLISVVPSLDTGVCDAQTRRFNSEAAELGDDVVILTISTDLPFAQARWCGAAGIDRVITLSDHKEAAFGQAYGVLIKEFRLDMRSIFVIDKNNKLTYAEYLGEMSEHPNYDAAIAAVKELL
>NZ_CP009284.1|WP_042175310.1|2666675_2667302_+|rhomboid-family-intramembrane-serine-protease
MIFIRYENWKSYLRYYPVTVILLLANLLMFIVVSLNGGSTNLDTLVKFGAVVDNGPEKEELWRYFAAMFLHNGFSHLFFNSFSLLVFAPPLERLLGWWRYTILYVIGGFLANVLSVALGTTPEAYTATVSVGASGAIYAIYGAFLYIAVLQRGMMDEGSRKTLYGLLVMGIVMSFVTPYVNWLAHLGGLVAGFFLYGLIIRLLKRSRR
>NZ_CP009284.1|WP_042175312.1|2667315_2668227_+|LysR-family-transcriptional-regulator
MELRQLQYFLKVAQKEHVTKAAEELHVAQSAVSRQIHQLEQELGVDLFMQKGRNLQLTPVGQLFCKRVETLLKDLERSVAEVHEFLDPELGEIRIGFPHSLGTHLIPSIVAEFRRMYPNVRFRFKQGTYASLIKDVVSGEVDLAFISPFPENDGQVAGDIVMTEELFAILPQHHPLAGEEVLRLEQLAGEKFVLFSQGYSLRPIVWQACIEAGFKPQIAFEGGETDTIRGLVAAGMGVSLLPETALYQTNPMQPAQVRVVEPAVTRTVGIIHRSDGKLPLVARSFRTFLLTYFKDYNKTPEGC
>NZ_CP009284.1|WP_042175313.1|2668271_2668937_-|zinc-metallopeptidase
MFFLVIVAFLFSLWAQFRVKGTFNKWAKVANVNGLTGYEAARRMLDANGLHDVPIEPVRGTLSDHYDPINRVVRLSEPVYYESSISAVSVACHEVGHAIQHKVHYPMLTLRHRMFPVVNFASGVAPFMLLAGFIFSATNLIGLGIIFFSAAVAFQLVTLPVEFNASNRARQVMVEQGFIRNEEERGVAKVLNAAALTYVAAALVSLLELLRLITMFLGNRE
>NZ_CP009284.1|WP_042175314.1|2668970_2669402_-|MerR-family-transcriptional-regulator
MTLYRIGELAKASSLSERTIDYYTKLGLIAPESRSMKNYRLYSHETLTALERINQLKQEKFSLEEIKSMMDKWNAAAPEADVSDKLVELELQMQRLEREVKALEPMISGLKPVQARRALAALIPQGVACMEAIKLLLTQNPPM
>NZ_CP009284.1|WP_042175316.1|2669922_2671314_+|ammonium-transporter
MKKKLLMMFLAMITLMIYPVSAFAAEGPAAPDLQIGLDTAFTFLAFILVFFMQSGFALLEAGSVRMKNAGHVAGKTVLTLAIASLCFWAVGFAFGFGNGNGLIGLDGFFYGGDSMSAAFESLAFSDVTLNTKFLFQMAFAAVSLAIVSGGMAERAKLSVYIIFGILFSVIIYPVVAHWVWGGGWLANLEMQDYAGSTVVHLTGATAAVVATILLKPRLGKFNKEGKPVIIPGHNQVFTVLGVIILWFGWFGFNPGSALSPMGGFFGHVALTTNIAAAAGGLAALVASWLYFGKSDIPAMLNGVLAALVAITGACAFVEPWAAIIIGLVAGAFTFMTSQWLERAGLDDPIYAFSVHGIAGMWGALSTGLFAAPDLIEQGGLVGKAGLFYGGGLHQLGVQALGVVGTFVFVAVLSFVILYVMKMVMGIRVTEEEELMGLDISEHGTYGYPEQMKLITDSESKTQK
>NZ_CP009284.1|WP_042182491.1|2671361_2672435_+|signal-transduction-protein
MERTEWNEDERLLSITTAGSPQELRGRRAACQQALLEQLNVIPIEEWVSRVNAMHDMVAAAAVNICEAQMKEAGYGPPPCAYSFIVFGSAGREESTLWSDQDNGLIVEGEPDDLKRTYFTAFGELLSDVLEAAGYEKCDGRVMCSEPLWRKTLPEWKEQLSSWMSQMEWEPVRYLIIASDMRHVAGSAELSAEWREAFHAGFADNEKLTTAVLRNTVRHKATLNLLGQVLTERFGDYAGGFDIKYGVYIPLVNIVRHLALLHAVQDSSTLKRIERLSDLDKYEHLEEIRAAFLTALRMRVNTPYTEQDGLLSSSDYISENDLKNKQLMSELRESLLLVRRLHRALQRQLRSAERRQS
>NZ_CP009284.1|WP_042175318.1|2672431_2673181_+|DNA-polymerase-III-subunit-epsilon
MKEPNKGGGFWNNLRQGGMPSAIASIRGGESAQQTAQQMAFIRSLMREKRRPEVLHTPLSELETVIFDLETTGFSHQHGDEIMSFGAIKVVGEEIKEDECFYTLVKCQSAIPENITRLTGITEEMSASAPSLIDGLHNFMTFVGQRVLVAHGSAHDKSFLNAALWKTSKVQLTHRVLDTMMLARWLEPHRSNYTLDELLAVHEIPIQGRHHALEDAKMTARLWVDYLREIASKRQVDTLGDLYAYLSRA

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Crispr_ID: NZ_CP009284_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009284_6

2906419-2906492

Orphan

Consensus_repeat	Method
TAGGTGAACAAAATCCAATTAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009284_6

>merge|NZ_CP009284|6|2906419-2906492|CRISPRCasFinder
TAGGTGAACAAAATCCAATTAATCACTCGAAATGTTGATAAATGGCAGAAATAGGTGAACAAAATCCAACTAAT

>NZ_CP009284|6|6|2906419-2906492|CRISPRCasFinder
TAGGTGAACAAAATCCAATTAAT	CACTCGAAATGTTGATAAATGGCAGAAA
TAGGTGAACAAAATCCAACTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009284.1\|WP_042175664.1\|2901152_2901983_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226953
NZ_CP009284.1\|WP_042182559.1\|2903853_2905959_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378045
NZ_CP009284.1\|WP_052419035.1\|2912141_2913839_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP009284.1\|WP_042182565.1\|2918768_2919686_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225980
NZ_CP009284.1\|WP_042175660.1\|2899258_2899804_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP009284.1\|WP_042175676.1\|2911080_2911779_+\|cyclic-nucleotide-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|223736
NZ_CP009284.1\|WP_156131115.1\|2902049_2902865_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213234
NZ_CP009284.1\|WP_042182563.1\|2914741_2918611_+\|carbohydrate-binding-protein	unknown	unknown	gnl\|CDD\|271156
NZ_CP009284.1\|WP_042175673.1\|2909449_2910961_+\|DUF4173-domain-containing-protein	unknown	unknown	gnl\|CDD\|379362
NZ_CP009284.1\|WP_042175668.1\|2906911_2907370_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213403
NZ_CP009284.1\|WP_042175657.1\|2897571_2898168_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP009284.1\|WP_042175677.1\|2913892_2914318_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042175659.1\|2898797_2899262_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042175687.1\|2921799_2922810_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042175666.1\|2903243_2903735_+\|damage-inducible-protein-DinB	unknown	unknown	gnl\|CDD\|225200
NZ_CP009284.1\|WP_156131114.1\|2900352_2901156_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|253605
NZ_CP009284.1\|WP_042175658.1\|2898247_2898793_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|168472
NZ_CP009284.1\|WP_042175682.1\|2920857_2921778_+\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|273465
NZ_CP009284.1\|WP_042175681.1\|2919864_2920740_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP009284.1\|WP_042175661.1\|2899838_2900282_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181

Protein	Function_ID	Function_description	E-value
NZ_CP009284.1\|WP_042182559.1\|2903853_2905959_+\|hypothetical-protein	gnl\|CDD\|378045	pfam08757, CotH, CotH kinase protein. Members of this family include the spore coat protein H (cotH). This protein is an atypical protein kinase that phosphorylates CotB and CotG.	3.25615e-64
NZ_CP009284.1\|WP_052419035.1\|2912141_2913839_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.51833e-54
NZ_CP009284.1\|WP_042182565.1\|2918768_2919686_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225980	COG3449, COG3449, DNA gyrase inhibitor [DNA replication, recombination, and repair].	9.10435e-54
NZ_CP009284.1\|WP_042175660.1\|2899258_2899804_+\|hypothetical-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	5.6301e-10
NZ_CP009284.1\|WP_042175676.1\|2911080_2911779_+\|cyclic-nucleotide-binding-domain-containing-protein	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	3.45213e-24
NZ_CP009284.1\|WP_156131115.1\|2902049_2902865_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213234	cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA. NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.	8.96251e-126
NZ_CP009284.1\|WP_042182563.1\|2914741_2918611_+\|carbohydrate-binding-protein	gnl\|CDD\|271156	cd14490, CBM6-CBM35-CBM36_like_1, uncharacterized members of the carbohydrate binding module 6 (CBM6) and CBM35_like superfamily. Carbohydrate binding module family 6 (CBM6, family 6 CBM), also known as cellulose binding domain family VI (CBD VI), and related CBMs (CBM35 and CBM36). These are non-catalytic carbohydrate binding domains found in a range of enzymes that display activities against a diverse range of carbohydrate targets, including mannan, xylan, beta-glucans, cellulose, agarose, and arabinans. These domains facilitate the strong binding of the appended catalytic modules to their dedicated, insoluble substrates. Many of these CBMs are associated with glycoside hydrolase (GH) domains. CBM6 is an unusual CBM as it represents a chimera of two distinct binding sites with different modes of binding: binding site I within the loop regions and binding site II on the concave face of the beta-sandwich fold. CBM36s are calcium-dependent xylan binding domains. CBM35s display conserved specificity through extensive sequence similarity, but divergent function through their appended catalytic modules.	2.041e-61
NZ_CP009284.1\|WP_042175673.1\|2909449_2910961_+\|DUF4173-domain-containing-protein	gnl\|CDD\|379362	pfam13777, DUF4173, Domain of unknown function (DUF4173). This domain of unknown function contains multiple predicted transmembrane domains.	2.83045e-59
NZ_CP009284.1\|WP_042175668.1\|2906911_2907370_-\|hypothetical-protein	gnl\|CDD\|213403	cd12208, septicolysin_like, putative septicolysin, cholesterol-dependent cytolysin family and related proteins. This group contains some members identified as septicolysin. While septolysin is poorly characterized, it has been identified as a a cholesterol-dependent cytolysin, and acts to facilitate the infection of certain pathogenic bacteria to cells. Cholesterol-dependent cytolysins are pore-forming toxins that aid in bacterial pathogenesis of various gram positive species. Pores are formed by oligomerization into ring-like structures. Related proteins in eukaryotic immune systems use this pore-forming mechanism.	1.40169e-61
NZ_CP009284.1\|WP_042175657.1\|2897571_2898168_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.13276e-16
NZ_CP009284.1\|WP_042175664.1\|2901152_2901983_-\|hypothetical-protein	gnl\|CDD\|226953	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only].	3.27335e-13
NZ_CP009284.1\|WP_042175666.1\|2903243_2903735_+\|damage-inducible-protein-DinB	gnl\|CDD\|225200	COG2318, DinB, Uncharacterized protein conserved in bacteria [Function unknown].	1.12874e-26
NZ_CP009284.1\|WP_156131114.1\|2900352_2901156_-\|hypothetical-protein	gnl\|CDD\|253605	pfam06182, ABC2_membrane_6, ABC-2 family transporter protein. This family acts as the transmembrane domain (TMD) of ABC transporters. The family includes proteins responsible for the transport of herbicides.	1.25195e-28
NZ_CP009284.1\|WP_042175658.1\|2898247_2898793_+\|AAA-family-ATPase	gnl\|CDD\|168472	PRK06217, PRK06217, hypothetical protein; Validated.	1.06328e-84
NZ_CP009284.1\|WP_042175682.1\|2920857_2921778_+\|cysteine-synthase-A	gnl\|CDD\|273465	TIGR01139, Cysteine_synthase, cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate. [Amino acid biosynthesis, Serine family].	9.63331e-161
NZ_CP009284.1\|WP_042175681.1\|2919864_2920740_+\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.82305e-21
NZ_CP009284.1\|WP_042175661.1\|2899838_2900282_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.10098e-14

>NZ_CP009284.1|WP_042182559.1|2903853_2905959_+|hypothetical-protein
MMLTTLSLAVVASVGGVTGSPSAAFAAEAGVSQAYESLFTPDKVINVKVTVADEDWESILAKPLEKEYKSVTVDVDGTVLENVGFSTKGNLTLKSVAAMTDSDRYSFRLKFDKYDKTQTLLGLDKMVLNNSYSDPSFLREYLHYEALRAIGEDAPLTVFTNLYINGELYGFYIGVESVDDSYLERNFGEDADSGVLYDTEEKSYLQYEEDGDYETLTYDTGTKDDKASLKKFISVLNAMPDGQKGDIESVLDVDSALKYIAANAVLGNYDSYNGDKGHNYLLYGDAAGKYTVIPWDMNMSFNGYSTGGGGGRMQDAAGTAAAGTTGTTAGTAALSGTSGTTGTAAASSATNAVNASIDTPTLGINVDQVPLIGNLLEVPEYKTRYNGYVSELVTYLEGIQDRITGLTTLIRPYVQADPTKFYTMDQFENNVAYTADAGGSGGMMGGGGDMTPPDGTNGTPPARPDAAAGQAGTVGGAATAGQTGAANGTATAGTAAAGSAAGATATAPAAGGNTGMPGAGGGQGMGTMAAGSLMTFALNRLANLQEQLGLEVTPLPEVVATKGITAAAGAAGSTAASSSGSKAITVTLNGTAVSFQDQLPLNKDGRVLVPVSAIFSALGAEVTWDQAAKKITAVKGSTTIMMTIGSKTAYVNGTAVTLDVPAQIINNRTLVPVRFISEGLNMNVKWDAAAQTVTSADKAAE
>NZ_CP009284.1|WP_042175666.1|2903243_2903735_+|damage-inducible-protein-DinB
MQTLFRYNWMVREEWYKWCETLSEDALLQPRTGGAGGILKTLFHIADVEWSWIMAMQGKPDFEEDFAEYSTLGKVKELDARLRPEVEAFVLGWHEGLERNVFVDKRYEGERVTDAWGEIMRHIIAHEIHHTGQLSVWARELGDKPVSANVIGRGLRETLPGKE
>NZ_CP009284.1|WP_156131115.1|2902049_2902865_-|ATP-binding-cassette-domain-containing-protein
MQITLRDIKKSFKVYKRPEGKWGLLKGAFMRNVTEVEALGGIGFDIAEGELVGYIGPNGAGKSTSVKVMSGILTPDSGECTILGKVPWKNRVEHVSKIGVVFGQRSQLWWDVPVADSFDVLKDIYAIPPGDYTIRLNELTATLGVEALLRTPVRQLSLGQRMRCELVAALLHRPKILFLDEPTIGLDAVSKLALRNFLKEENRKHGVTMLLTTHDMDDIEALCERVMVIGHGTLLYDGKLAGLQEKYAPEVVMKVNTDAMIAAMYNDLALT
>NZ_CP009284.1|WP_042175664.1|2901152_2901983_-|hypothetical-protein
MDIKNTCRASASLFRIRMAEGLQYRVSAISGTVVGVFWALLECVLFTVFYTYSEHGSWNNNGMSLPQTISYVWIAQGLFVLQTMSIDGEIMGKINNGDVGIELCRPMNLYTHWFVKSSAGKLGNSWIRSVATVLTGLLMPAAYALSAPESFAGLLFFLLSVVMAFVLCSSFAMLVTAIRLNVTWGDGPSHMLLLLSGILSGTYLPLRLWPDFMQTFLYLQPFGGFADIPGQLYIGSMPTAAALPAIGLQCIWSTVFITAGRLIMNRKLKNIIVQGG
>NZ_CP009284.1|WP_156131114.1|2900352_2901156_-|hypothetical-protein
MSKNMIAESKIYFKYLRMHLLSGMEYKGWWLMLIQVLVVVVSDPIATVLLFSRFGNIGEWSVAHIILVYSLAVASFGLAESFCRGFDYFPWHLLRSGDFDRLLLRPRSLFVQVAASRFHLHRLVRPITGICAAGWALHELGVQLTPGKTVILIMALAGGCVMYCGVFVLTSGLAFFTIKGLDWIYLLTNASYQITRCPEPYMPRVLKSVFSFMLPMLFISFYPAAAVCGWDYPAWLGYLSLPAGAAFLGLSLLVWRIGVRHYKSTGS
>NZ_CP009284.1|WP_042175661.1|2899838_2900282_+|GNAT-family-N-acetyltransferase
MVTIKEIETDSLAELNELYRELTGELTDPARLKETFASVKADSRYILLGAYVDGELLGSLMGILCQDLVGECRPFMVIENVVVSARARRQGLARQLMTAIEQLARERNCYYIILVSGEKRKEAHVFYEKMGYREEQVEGYRKHLSSH
>NZ_CP009284.1|WP_042175660.1|2899258_2899804_+|hypothetical-protein
MRIGLVRHFKVVHPPLRGWVTGGQFNRWATEYDEAGILPGDCKGYAHSWDYCISSDLSRAVHTARSIFSGDVKYSPELREIGVAAAYGSVSGFRLPSVCWMVLGRLLWLSGHASQPESRREASQRAKTVLDNMESMPEHTSVLLITHGAFMKLLEKELRRRAYTGQRMNHPRNGQLYVYEK
>NZ_CP009284.1|WP_042175659.1|2898797_2899262_+|hypothetical-protein
MRRTTAVRIFLLNGFIAVLLLLTACNSGTLHQTYTYSGEGEHWSAIYSETNTEKPVISEGKATYYQASSDYSFQLAYKGEAKDLKEIKQFTYGFEALGHSSRQSMEGPVRMESLHMYGSSSGSLNRGQAVITVSVEWDGQKEQFVLQTDGDEPE
>NZ_CP009284.1|WP_042175658.1|2898247_2898793_+|AAA-family-ATPase
MKHRIHIMGASGAGTSTLGQALASRLPHRHLDSDDYFWEHKYTKQRDTTERLSRIKYDLDQPEPWVLSGAVCGWGDGLRPYFDLVIFLWIPPELRLERLRAREYERYGTESLPGGSRYEDVQTFLEWASLYDTAGPEVRSRKLHESWMLELDCPVLRLEGDLPVVERVETVLGYLSCGKEG
>NZ_CP009284.1|WP_042175657.1|2897571_2898168_+|TetR/AcrR-family-transcriptional-regulator
MVKYKKSDEKRKQILSAAFRSLSEHGYDSVTLQTIADYAEVSKGVVHYYFASKEAVLVELLEWLTGKISARERAAVAEQHTAEGKLAAYIDSAFAGPAQNRSFYRVYLDFLSRASRSPVYREINQRFYDSCAGISTEVLLLGQQEGVFNKELAPGRAAPVIRAIIDGCLIQWLMTGRDELHADFKDSCYAAVMKVLSV
>NZ_CP009284.1|WP_042175668.1|2906911_2907370_-|hypothetical-protein
MRLAEALVLRADCQRKVAQLKQRLGRVIKVQEGDQPSEPPAELLQELKHTLDELAVWIKKINKTNSLSPFNADLTLSEALAERERIMQHRNILNELLNEASIKQERYGRQEVKFYTTIEVTSLQKDVDELSKQYRELDFRIQEKNWSTDLLE
>NZ_CP009284.1|WP_042175673.1|2909449_2910961_+|DUF4173-domain-containing-protein
MNEKVPVIPRSALSALAAALLLAIVHQYLFYGHMPGVSYPIFVVLFYGFMLYYAKEQLRPLKWFDYVWLAAIFLLAMTFMLFSNWFFYGLNLLALPVLILLHTTYLLSYRRPSWSGIQLIGAALEHFFAQGPRHWPTVFTAIRRTGGEGMKSEHKQIYLKVLAGLLLSCPLLLIVVSLLSSADGVFNELLNTFPDLLERISFGEGFGRTLWSVVLGIGLFSYLMGFVAYKRTERQVIVLKEGEPQLEPFELSVDPVIITTVLTAVNAVYVLFVSVQFSYLFGAWEGDLPQGSTYADYARSGFFELIMVTSINFCLLLLSLLALPRAKARLLSVIRILLYILVMCSVVMLYSAYSRLTLYEEAYGYTEIRFLVHAFMIFLGLLLILAAVRISKTDFPLMKWVVALGLLSYVFMNYIGMDRIIAFQNIARYEATGDIDKYHLTGLSWQAVPLLISFSKDNDDLLKQELGEKWTNQSAEAKQEWPSFNLSKHQGQQALRDYIHSLK
>NZ_CP009284.1|WP_042175676.1|2911080_2911779_+|cyclic-nucleotide-binding-domain-containing-protein
MQSMIDPEAVQRLADRNGLGKIFSSTDIAAMELRRYGDGEVICSVGDRLESMFILMEGKLKIHTLLPNGKSMLVRFARPMSVIGDVELLRQYPVKNEVVSVGSSLLLVASRKMLLRELEENTALLRFLMGELSHKMYTLGQTSALNLLYPVENRFASYLMSLFEETVGGQRVEEIRTSSLTETADLLGTSYRHLNRIVRRFIDEGIIERKRGRLSVLDQTRLAQLANGNLYE
>NZ_CP009284.1|WP_052419035.1|2912141_2913839_+|methyl-accepting-chemotaxis-protein
MLKGIRARILMGFAAVILVFILAIAGNTLFQGKATMQTDQINRNYSKLTRVQELTDKIRTADGLAARYVMSNTDDERTKYLTTYEAVIPEITAAITELKNAGLNEAELSGITNLESEWSNYLTVLESAFAMAKEGNFPGAQKEFTNLSLDTIIESQIVFEEVLTKEITAAQSQAASHRGSAMGFSFGVTGLSVLLAVLIALLLSGRILKPIRDVNKQLQEIAEGRADLTRKLTVRSRDEIGQLAHTFNQMTGNLGSIIGQVSQSADSLAASSSRLTADSGMTAAVTEKIAGIMGSVASGTDKQMNDLQTNMTTIVEMSAAIQQIAASVQDISDASVRSAEYAASGDESLQAAARQMDSINASIASLSQQVMGFVNRSQEIGSLVGVIKGIAAETNILALNAAIEAARAGEQGRGFAVVADQVRRLAEQSGESANLIAEMAASIQTEASGAVATMKLSMSEVEDGTGIIGDAGHAFGEIRISIDSLAGQVQEVSGAVEEITAATDEIVESIRKVTQISETTASSTQHVSAASQEQMASVEQIASSASTLSTMAQGLQGLVARFNIA
>NZ_CP009284.1|WP_042175677.1|2913892_2914318_-|hypothetical-protein
MTAKHKNTDFYMLPVSAAVILYFIFVVIPYGDSHNFFSEASVPEGNEVWPYFLMTTPALIVYLIIIFKWVKRIQFLRWLNYPVIIFIVNFISLICLSAFNGGTVFWLIFITGPVSLLLTAVFFTIGLIKDLRFLRAAKEQK
>NZ_CP009284.1|WP_042182563.1|2914741_2918611_+|carbohydrate-binding-protein
MYSLIALLLIGQFGIVPAVSAAAGNLAQGKSITASSVGDVYAAGNANDGNQGTYWESAGNAFPQWIKVDLAADSSVNQVVLKLPAGWEARTQTLSVQGSVNDTSYSNLATSSSYVFNPAAGGNSVTINFTPATARYIKINFTANTGWPAAQVSELEVYGTAAATPGTYEAEAAALSGGAKSNTDHSGYTGSAFVDGYLTQGAATTFTVTTAGAGNVDAALRYANATGSAKTISIYVNGTKIRQTVLPSMANWDTWGVKNETLALNAGSNTIAYKYDPSDTGNVNLDQLVLTASTSPTAAPTASPTVAPTIAPTPAPTVPPTIAPTPSPTAVPTPTTTPVSTPTATVTPAPTATPTTGPSSNLAAGKTVSASSSVFTFIPANATDGDISTYWEGAGGSYPNTLSVNLGADANITSVVVKLNPASAWATRTQTIEVLGHNQNNAAFSTLVPSAAYTFNPASGNSVTIPVTATASELQLKFTANTGSGAGQVAEFQIFGTPAANPDLTITALAWNPSAPVETDNITLHATVKNAGTAVSPATNVNFYLGTALAGTAQAGTLAAGASSTVSLNIGAKDAGTYAVSAKVDEGNTVIELNEANNSYTNPSALTVIPVSSSDLIAGAVSWSPGNPAGGNIVTFTAAIKNQGTAASSGGAHNITLTLTDAATNAVIKTLTGSYSGVISSGATTAPVTLGTWTAVNGKYNVKTQIAVDGNELPVKQANNTETRPLFIGRGANMPYDMYEAEDGVTGGGAVKLAANRNIGDLAGEASGRRAVTLNTTGSYVEFTTRASTNTLVTRFSIPDAAGGDGISSTLNIYVNGIFTKAINLTSKYAWLYGSETSPGNLPSAGSPRHIYDEANIMFNSTIPAGSTIRLQKDAANTSQYAIDFISLEQVAPVANPDPAKYAVPAGFTHQDVQNALDKVRMDTTGKLEGVYLPAGHYETSSKFQVYGKAMKVIGAGPWYTRFYAPASQSNTDVGFRATDSANGSTFSGFAYFGNYTSRIDGPGKVFDFANVANMTIDNIWTEHMICMYWGANTDYMTIRNSRIRNTFADGINMTNGSTNNLVSNNEARATGDDSFALFSAIDSGGADMKDNVYENLTSILTWRAAGVAVYGGYANTFRNIYIADTLCYSGITISSLDFGYPMNGFGASPATNLQNITVVRAGGHFWGSQTFPAIWVFSASKVFQGIRVSDVDIIDPTYHGIMFQTNYVGSAPQFPVADTVFTNITISGALKSGDAFDAKSGVGIWVNEAAEAGQGPAVGSVVFNNLKITNTVTPIKNNTSTFTITVNP
>NZ_CP009284.1|WP_042182565.1|2918768_2919686_+|AraC-family-transcriptional-regulator
MNNDYKQRIGAVLQFIEEHIGEDIRLDTLAEVSNFSKYHFSRVFSAIIHKSPVNYLTERRLHHAAAYLTATDKTMLDISALCGFNSLSSFNAAFKKAYNTTPSAMRKSLLNPSNIPSVTGNKPEELSPSKDYDLKSTSNNFLRRVWGMNIELKELPGYKVAYVRHAGSYLDTYKVWETLGTWVRSSGLPATETYIGISLDDPGVTDESSCRYDACITVPEGFTASDDAGIAFRYLPGGTYALYKFYDTIDKLAIAYQSVYGGWLPSSGYEPDDRDALEFCMNDPYSDPEGMAKVDLYVPIKLTLS
>NZ_CP009284.1|WP_042175681.1|2919864_2920740_+|DMT-family-transporter
MKKSKVLGSLFLSLAASIWGGMYVVVKHVVEVVPPLEIVWLRYMIAIVALLIIGIVTKQSWRIAKRDMLLILMIGLIGNTVSILTQEAGTMLSTAQMGAIITSTTPAFMVLFARIILKERITLKKALSIILATTGVGVIVGTGSIDPSLRLGGISLLVAALTWALMSVLVKKVPGQYSQIVVTLYSILVAFAGITPFTVSRLPRLDLQAMLHPSIWGGLLYLGIISTACGFLLWNRGLQMLNASSGGLFFFLQPVVGTLLGWLLLGEQIGLTFWTGTAFIFIGVLLVVREK
>NZ_CP009284.1|WP_042175682.1|2920857_2921778_+|cysteine-synthase-A
MKSKVVNNIAELIGDTPAVRLNRLTGPDDAEVYVKLEMFNPSGSVKDRAAYNLILQAELDGRLQPGGTIIEPTSGNTGIGLAMNAAAKGYKAILVMPDNMTKERINILKAYGAEVMLTPAAERMPGAIAKALELGAATPGSFIPQQFENAANPDIHRTTTAPEILEQMEGRLDVFVATSGTGGTITGTGEVLRRELPGIRVVVVEPYGSPVLSGGQPGPHKLVGTSPGFIPAILNTEVYDEIVQVEDEAALETVRALAGKEGILIGPSGGAAVWTALQEARRLGPGKRVLCIAPDTGERYLSMGIF
>NZ_CP009284.1|WP_042175687.1|2921799_2922810_+|hypothetical-protein
MRGYHSFKTLSMPKRLKPAAVLAAVMAFTLCLAGCTDANGGQNASQGDSPVASATAAAGAPTAAPAATQTPGPAYTPANQAVLDPAELQPVFGFAGEAGRQILVTREADGEEGKMQALDTAIGSSGQVLKVRFAEWQRGNDQNNGRELAVNLPNISGYVFTADGDAAVPDETYYLVNSSAFNLEALIPVEPEPAESEQLPEADPVRKSITDAKHREIYSAWKLASLQPGRELYLIQFVRQNKDMLFSLVLEEAGKLSFMDYPAEITDNEYSVWRVDDGGEVIPQMFSLLFAARTADGLLLGVNWLGAEGINSFFLEQTGDAFKELDIQYGRYTSPL

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Crispr_ID: NZ_CP009284_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009284_7

3517851-3517926

Orphan

Consensus_repeat	Method
TGTAATTGTTTTTTCGCATACATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009284_7

>merge|NZ_CP009284|7|3517851-3517926|CRISPRCasFinder
TGTAATTGTTTTTTCGCATACATTTGGCCAGTTTACCCTTATGGTGGCAGAATGTAATCGTTTTTTCGCATACATT

>NZ_CP009284|7|7|3517851-3517926|CRISPRCasFinder
TGTAATTGTTTTTTCGCATACATT	TGGCCAGTTTACCCTTATGGTGGCAGAA
TGTAATCGTTTTTTCGCATACATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009284.1\|WP_052419066.1\|3509063_3510734_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213023
NZ_CP009284.1\|WP_042176739.1\|3524235_3526197_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238558
NZ_CP009284.1\|WP_042176726.1\|3514284_3516966_+\|sensor-histidine-kinase-KdpD	unknown	unknown	gnl\|CDD\|225115
NZ_CP009284.1\|WP_042176744.1\|3529552_3530422_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|368185
NZ_CP009284.1\|WP_081947624.1\|3508019_3508787_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366353
NZ_CP009284.1\|WP_156131132.1\|3510866_3511760_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117
NZ_CP009284.1\|WP_042176734.1\|3518710_3520192_+\|Lsa-family-ABC-F-type-ribosomal-protection-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP009284.1\|WP_042176737.1\|3521299_3522586_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372355
NZ_CP009284.1\|WP_042176713.1\|3505226_3505748_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_156131133.1\|3518226_3518400_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042176736.1\|3520293_3521151_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|272905
NZ_CP009284.1\|WP_042176729.1\|3516958_3517678_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP009284.1\|WP_042176715.1\|3506472_3507930_+\|DUF4179-domain-containing-protein	unknown	unknown	gnl\|CDD\|379369
NZ_CP009284.1\|WP_042176717.1\|3511986_3513186_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP009284.1\|WP_042176738.1\|3522781_3523828_-\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	unknown	unknown	gnl\|CDD\|226985
NZ_CP009284.1\|WP_042176746.1\|3530468_3531599_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP009284.1\|WP_156131131.1\|3505946_3506459_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|213752
NZ_CP009284.1\|WP_042176723.1\|3513289_3514111_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP009284.1\|WP_042176742.1\|3526405_3529531_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP009284.1\|WP_042176749.1\|3531627_3532113_+\|nitroreductase	unknown	unknown	gnl\|CDD\|380312

Protein	Function_ID	Function_description	E-value
NZ_CP009284.1\|WP_052419066.1\|3509063_3510734_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213023	cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes bacterial poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, hemin storage system HmsF protein in gram-negative species, intercellular adhesion proteins IcaB, and many uncharacterized prokaryotic polysaccharide deacetylases. It also includes a putative polysaccharide deacetylase YxkH encoded by the Bacillus subtilis yxkH gene, which is one of six polysaccharide deacetylase gene homologs present in the Bacillus subtilis genome. Sequence comparison shows all family members contain a conserved domain similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, which consists of a deformed (beta/alpha)8 barrel fold with 6 or 7 strands. However, in this family, most proteins have 5 strands and some have 6 strands. Moreover, long insertions are found in many family members, whose function remains unknown.	4.56219e-39
NZ_CP009284.1\|WP_042176739.1\|3524235_3526197_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|238558	cd01138, FeuA, Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	4.02605e-48
NZ_CP009284.1\|WP_042176726.1\|3514284_3516966_+\|sensor-histidine-kinase-KdpD	gnl\|CDD\|225115	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms].	0
NZ_CP009284.1\|WP_042176744.1\|3529552_3530422_+\|amidohydrolase	gnl\|CDD\|368185	pfam04909, Amidohydro_2, Amidohydrolase. These proteins are amidohydrolases that are related to pfam01979.	8.33183e-20
NZ_CP009284.1\|WP_081947624.1\|3508019_3508787_-\|hypothetical-protein	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	8.65583e-30
NZ_CP009284.1\|WP_156131132.1\|3510866_3511760_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.58813e-25
NZ_CP009284.1\|WP_042176734.1\|3518710_3520192_+\|Lsa-family-ABC-F-type-ribosomal-protection-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	6.25123e-111
NZ_CP009284.1\|WP_042176737.1\|3521299_3522586_+\|hypothetical-protein	gnl\|CDD\|372355	pfam12876, Cellulase-like, Sugar-binding cellulase-like. This is a putative cellulase family. The structure is a TIM-barrel.	2.81969e-14
NZ_CP009284.1\|WP_042176736.1\|3520293_3521151_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|272905	TIGR00099, Uncharacterized_protein_MCAP_0867, Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. This subfamily of sequences falls within the Class-IIB subfamily (TIGR01484) of the Haloacid Dehalogenase superfamily of aspartate-nucleophile hydrolases. The use of the name "Cof" as an identifier here is arbitrary and refers to the E. coli Cof protein. This subfamily is notable for the large number of recent paralogs in many species. Listeria, for instance, has 12, Clostridium, Lactococcus and Streptococcus pneumoniae have 8 each, Enterococcus and Salmonella have 7 each, and Bacillus subtilus, Mycoplasma, Staphylococcus and E. coli have 6 each. This high degree of gene duplication is limited to the gamma proteobacteria and low-GC gram positive lineages. The profusion of genes in this subfamily is not coupled with a high degree of divergence, so it is impossible to determine an accurate phylogeny at the equivalog level. Considering the relationship of this subfamily to the other known members of the HAD-IIB subfamily (TIGR01484), sucrose and trehalose phosphatases and phosphomannomutase, it seems a reasonable hypothesis that these enzymes act on phosphorylated sugars. Possibly the diversification of genes in this subfamily represents the diverse sugars and polysaccharides that various bacteria find in their biological niches. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences. [Unknown function, Enzymes of unknown specificity].	8.80703e-62
NZ_CP009284.1\|WP_042176729.1\|3516958_3517678_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	9.32234e-81
NZ_CP009284.1\|WP_042176715.1\|3506472_3507930_+\|DUF4179-domain-containing-protein	gnl\|CDD\|379369	pfam13786, DUF4179, Domain of unknown function (DUF4179).	2.93299e-07
NZ_CP009284.1\|WP_042176717.1\|3511986_3513186_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	7.79609e-67
NZ_CP009284.1\|WP_042176738.1\|3522781_3523828_-\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	gnl\|CDD\|226985	COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only].	6.65421e-34
NZ_CP009284.1\|WP_042176746.1\|3530468_3531599_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	3.63144e-54
NZ_CP009284.1\|WP_156131131.1\|3505946_3506459_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|213752	TIGR02954, RNA_polymerase_ECF-type_sigma_factor, RNA polymerase sigma-70 factor, TIGR02954 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.	1.93075e-45
NZ_CP009284.1\|WP_042176723.1\|3513289_3514111_+\|hypothetical-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.54708e-23
NZ_CP009284.1\|WP_042176742.1\|3526405_3529531_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.86494e-14
NZ_CP009284.1\|WP_042176749.1\|3531627_3532113_+\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.13589e-37

>NZ_CP009284.1|WP_042176729.1|3516958_3517678_+|response-regulator-transcription-factor
MNKPLILVVEDDKPIRKLITTTLETQGYKYHTAETGEASILEAVSSQPDLMILDLGLPDMDGVEIIRKVRAWSNLPIIVVSARSEDRDKIDALDAGADDYLTKPFSVEELLARLRVSLRRIRYDSEKLQKDSSVFINGNLRIDYAAGCVYMGEEEIHLTPIEYKLLCLLAKNAGKVLTHNYILREIWGSLTYDVPALRVFMATLRKKIEKPPVQSKIIQTHIGVGYRMLQSGEESKITQ
>NZ_CP009284.1|WP_042176726.1|3514284_3516966_+|sensor-histidine-kinase-KdpD
MAQHSIQTKKRGRLKIFFGYAEGVGKTSAMLNAAHDELRDGTDVVAGFIESHGRPETGVLLNGLEQLPVLELRSNPSSRQELEFNLDQALRRRPELILVDELAHYNAAGCRHKKRYQDIEELLRAGINVYTTINVQHIESLHDVVTAITGITVHERIPDSVFDGADQIELVDLPPDDLLERLNKGKLASEGLAEPGGPAAYLPVFVRTKLIALREIALRYTADQQERITRESGSRSGKDTYSTADHILVCLSSAASSKKVIRTAARMAEAFRGSFTALYVETPKSKELTAKSKAELRDNLRLAEQLGAQPATVYGDDVAGQIAEYAVSSRVTKIVIGRSRSGKKRWIAKGNLIDKLTELAPNIDIHIIPDNQPARHKRPFLFVRPQRFSLPDTLKTLGILAVCTLIGLWFQYLGFREANMIIVYILGVLLNAIVTSGRLYSAANSVLSVLVFNYLFTEPYYSLWAADSGYPVTFLVMLTASFISSTLTTRIKEQARQNAQKAYRTEVLLETSRILQQAEDAEAIINETAVQMVKLVDRTVIFYPAGQEGLADPLVYPKPEADLDPSKYTGMNEWAVADWVYKNNKRAGATTDTFSAASCLYHAVRAGETVFAVAAVVMDQEEPLGIFEKSLLIAMLGECALALEKEQLSNTQKEISIQIRQEQLRANLLRGISHDLRTPLTSISGNAGILMANSNVLSDAQLRGLYTDIYDDSMWLINLVENLLSITRIDNGSLNLNFQAELLDEVIAEALLHVNRSSVEHNIQVKLEDELLMARMDSRLIIQVLINLVDNAIKYTQTRSTITITAGQEQQTVRVSVADDGPGISEEAKAKLFEMFYTADNLRGDGRRGLGLGLSLCKSIVHAHGGTIEVMDNNPQGAVFTFTLQAEEVNVLE
>NZ_CP009284.1|WP_042176723.1|3513289_3514111_+|hypothetical-protein
MDNLTALVLAAPMFKQIHAQDIMIGITDREIFHYYAPSKVLDFGLTKGSPVSPDDPSLGNALAGRATTNRLSAELYGATVISSAVPVYGAEGEVIGAFAIAYTLENEDKMEQLTGNINLISGQLVDMVQNVAAQSEELSATTAQILDNSRQTVEESKQVNKVAGFIREISEQTNLLGLNAAIEAARVGEQGAGFGVVASEVRKLSVNTKEATKTIEDSLALVQRSIRQMEQEIEAIAASSAAQAELVTQFSDVIERLNETSGEMTRFISSIIQ
>NZ_CP009284.1|WP_042176717.1|3511986_3513186_+|MFS-transporter
MKKGNERGLVFSFTFMAFLLGTTEYIIVGLLSEIAASLQITLAVAGSLVSGFAIAYALGTPVLMTLVSRLPKKQTILAAIALIVVFNLFSAVSGTYGLMLFTRVATAVLCGLAISLSLSAVSEVVTPAKQGKSVSYILGGFGIANVLGVPIGTFVGQHFEWQAAFILTAVMGVAAFVLNLMVIPSNLTNTKASLKEQLRLLADRRIILAFLIPVFGTGAVFSIYTYIRPLMDQVMNISAASVSWVLLAYGLATIFSTWLGGLVASGNALGRLRIVFLVQAAIYVLFFFAAPIPVLGLVFLILSACVSNILNVTAQLYLIELAVEHSPGSRDFAASLNPVAANTGIAGGSALGGVVVGTSGLAALSWTAAGIALAAFAVTAISYRLKQRSVHRKAQAAAA
>NZ_CP009284.1|WP_156131132.1|3510866_3511760_-|helix-turn-helix-domain-containing-protein
MSLQPLMKAGYGMDDNAGLLMNMNTGAFNSELIYAGKMSANPEWKFALHKHEDLHEVIYIVDGAGSYVIDGKAYTAQKGDVLIYNRGTLHQEQSHPDQPLSTYYFNFRFLHPVDGLRDWVVPPGWEPVIRANHYTGELAMLIQVLYSEFSLRNKGYERISQHLLETILLLLERMILLQNRTAKEEKASLANQIKVYLDTHYRRKLTLADLAQLFHIDSYYLVHMYKNNFGISPISYLIQRRMGEAMRLMAVTDKKIWEIAKLVGYDNANYFSILFTRVIGISPRKFRESNQRDMFEN
>NZ_CP009284.1|WP_052419066.1|3509063_3510734_+|polysaccharide-deacetylase-family-protein
MLKKFYVSFLILIFCLNLFSFQALAQVNTITSNGKLTIDSINTTKNYFEVSVSDLWYMGWYKADSSNDSSPYFAVYKKSEGPESAIWYSMQKDLTNSNRWASKVYFSDFNNEIGEYLITVYQNGITNYQGQTSTRSEYFLGELKVNYLDVTTSETNTTKSNVNLYARNINNVKGMFYAVWRSEDGIDTAKWFGMIKDSNEQYVSNIDIQNFDFKVGEYQINVFKTNADDSSTFVSNVKVTINPVTSSNEIHEKSFPVYAYKLNPDLTSAYMAVWKEEDGIDAAKWFGMRYDAIHNRWDYDINISDFNNRDGVYYVNVFGKIKNESDVFLGQTKINVHAKKVPVLMYHEIGDPQTGAVSKEDFQQQMEYLKDNGFTMLTFDQLASYENYEKPIIVTFDDGYSNNIQAYQVLKELQTSSFHPRATIFMIGAYIDNPHPNYLSVSQIKSMSDSGIISFQNHTYTHIDLRRTNFDENAEYIVSAQKINSITNKPVNVMAFPVGGYNSKVISIIKNSGYIYAVTTDDGKYVNTDDSDENYQIKRIGIYGKLSISEFAKKIE
>NZ_CP009284.1|WP_081947624.1|3508019_3508787_-|hypothetical-protein
MYTTKRNNRFRILVVGVSLGTALLTAGTGFIDNSSTAYAATATAKSTVSTTSNTSLAEQIIATGMKYKGVKYEYGAEAGNTSSFDCSSFTQYIFGQHDISLSRSSKQQSTDGTYIARNQLQPGDLVFFYSPIHHVAVYIGDGKILHTYGEGGVTVTDLDSGWWDEHYTTARRVLPSDSQDISKADAGSKTDTNSGSAAGSEKNTSGTDKPQTETETAPQTAPATDTAADTASDSSGSSSQDQASGFGWGWFSNFR
>NZ_CP009284.1|WP_042176715.1|3506472_3507930_+|DUF4179-domain-containing-protein
MKELEEQLLQQNADEVKQLTEAMPEMKIYQAMQSGVRTGKQLSRRKRMMSGLKITVAAAAVVVLLFTFLKIPDEAVEYTVQTENTANTGMNFSQIDTSLIRSKPLLNALNQNLLQPVNKGVEKAGFKVEITGAVSDGRQVYILYSVQNQTKQTVTHAEFGLEFGALKAANIGASLEMLGNDSQIRAGETLYFVYSNILSPETDYPEEAKYNVVLTQTSDIALSSSSNKYRTSLEVSFKLDTDMMQDRNRSWTARQDLTVAGQKLTVNQVLFTPLSTYVDIKVDERNTSQVFGLINPVLIGRSGEKIIKSYYPTAITADNSELWNDRSRFTLVYTSKEYLALDSLSLKTFGIAAADKNKLKLVIDLNRGELIEAPDGLSVKSQSESAKSGVITFQNKRESVETQGSFIMRLAENYTDADGKVYTRPGGEGFFSQSMSRGAKTFDEEYDYNFGLQAIDYPQPLTVEIERYWNPVMDTQSVNLVPEHK
>NZ_CP009284.1|WP_156131131.1|3505946_3506459_+|sigma-70-family-RNA-polymerase-sigma-factor
MEHTMHEIRQADIALLDEEAFFKRLYVEHRKLYAIAYSYMRNEADALEVVQEASCRAWIKRKKLKDGQSFTPWLIRITINCCMDELRRKKRVFPAEKLSEEAAQEMQSNERIDLERAIHRLKPKYRHTIVLKYYQDMTVPQIAEVLKKPEGTVKTWLRDGLKQMRAYLQK
>NZ_CP009284.1|WP_042176713.1|3505226_3505748_-|hypothetical-protein
MHTKKMMWSAATGLIAVLLISCFLIRPQLLARSTDLSAESIGGVKVRDNISSSSFTDMYQQPLDKQNNEMYDYYGWEGGLSTASINSGSQKGTILRLIISGPDNPLQTAKGIHTGDSKEKVLALYGNKYYKSGEQGADIIGYIDREQKLTLEFWCVNGSGEVAEIRLDDAGVR
>NZ_CP009284.1|WP_156131133.1|3518226_3518400_+|hypothetical-protein
MEKGLQLAGLAAVMLVLLYSAKSFFYRRDLRMLGHLEDEAAVRKAEEVVQELIGHKG
>NZ_CP009284.1|WP_042176734.1|3518710_3520192_+|Lsa-family-ABC-F-type-ribosomal-protection-protein
MSLINVTNLTFAYEGSYDNIFEQVSFQLDTDWKLGFTGRNGRGKTTFLNLLLGKYEYSGTISAKVGFDYFPFPVEHPEYLVSDIFDEICPDAERWQFARELSLLQVEADDVLYRPFETLSNGEQTKVLLAALFLKEDRFLLIDEPTNHLDMEARQLVSHYLGSKKGFILVSHDRAFLDNCVDHILSINKTGIEIQKGSFSDWWDNKQLQDAYELAENDKLKSDIRRLSDAARRTGGWSDEVEKSKNGTRNSGSKLDKGYVGHKAAKMMKRSKSIEQRQQSAIEDKSKLLRNIETSDRLKITQLPYHKKQLAEFDRVSVSFGERTVCSGISFSVEQGERIAVSGKNGSGKSSVLKLLTGELNGYSGTLRTGSQLKISYVSQDTSCLKGSLTEYARKHEVDESLFKAILRKLDFSRVQFEKDMASFSGGQKKKVLIARSLSEQAHLYIWDEPLNFIDVISRMQIEELLLESAPTLLFVEHDQEFCRNVATKVIEL
>NZ_CP009284.1|WP_042176736.1|3520293_3521151_+|Cof-type-HAD-IIB-family-hydrolase
MLPNKRRIVFIDVDGTLVDDNGNVPESAQKACKQARENGHLLYLCTGRSKAEIYDDIWTIGFDGLIGAGGGYVESGGEVLYHKKVTKEDVRHMVEFFDAAGVDYYLESNSALYGSRNLKAHLERRIYGDIENDPAARARMELTPHPFITGLTYGEADLVKDDVNKVCFLESDLPFEQISQQFKGKFEVIRCTVPLFGEGSGELMIPGIHKAVAIADLLVHLQLKQADSLAIGDGMNDAEMLEYCAVGIAMGNAKPGLKQIADDITGTVEEDGLYYSFVKYGLINT
>NZ_CP009284.1|WP_042176737.1|3521299_3522586_+|hypothetical-protein
MTYNPDNQLPAKLTITMWDFSWYTMTLPGEPYHDLAPRFAEAVERGYNTIRICAMPFLLFTADGPRPGPLKFGSLGKVGQRTRWYNCLGGAELDGHAHLLELFKQAEAHNCYIMLSSWEYQQSPSFLAHPQLRDELAAIAPEDRFMAIAKSMSQLIHYVKEAGYGKQIVYAELHNEVEFGQLTAVGAAQGIAFENVPANLRIMQPYIEEAVGYLRESHPDTLMTASYTVNEEYPKAYVARNMQVGHYHLYIKGVLNELMLTAGLDDHSIPFPGPFVQSLLREDAPPFEEWTLPAGQEWRMEGNPVGMRLIYLHDWADPDKWDLFLYDRYGAHKIAMLQKADKAFDEIHEWAGQAGVPLVIGEGYVGYTPLMAGFEEGPVGKFIAEYAISKGMALGFWGMTLCSNCAPHHPFWDDIAWQQKWNRYIMES
>NZ_CP009284.1|WP_042176738.1|3522781_3523828_-|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha
MTKTNALAEFQMQLPRDCTFTPSDWQVLSEYWYPVAIADEIQDKPVSVKLLDVKLVCYRSHGKVVIARDLCFHRGAPLSLGWVENDEIVCPYHGFRYNCEGACTSVPAHPNAKISPKLKLITYPAIERYGLIWTSLAGTEEQIPEFPGWDDPDFINILPPSFDIAGSSGRQMEGFLDVSHFAYVHSNSFADPDNTEVPQYKVRREDNELFADYWSTVSNYGKGQENPAPEGFMWLRAFRVFPPFAASLTVHFPEDGKLMILNCASPVSARYTRLFCPISRNFDKTVPVEDTIKFNLQIFSEDRDMVEAQTPEDLPLDLTAEAHIPADRTSIAYRQLLTELGLGRNYTS
>NZ_CP009284.1|WP_042176739.1|3524235_3526197_-|AraC-family-transcriptional-regulator
MNLKEHIVLWTHAAVEIMDIRLSTYSPGEQTIRYRLPCSAFICIVRGKAVISLDGFRHQISEGNVIHGGKGLTFELMQAEEIIEYYLILYRARLALPARKHLLSIMDRENPFELQYLCSPDAPLPLLDKLRIMHEYWLNGGRLEQLYVKTMLYQWVYELLRQLHVQGVQPLKPDVLETAIRYMENNLSLPVSLDKLAEAAGSSPRSLSRLFRMKLHTSPNQYLISLRMEKARELLLRTDASLQDIATAIGHPDAYYFGRMFKKHFGISPVRYKNSVKADASWPEMTSEASGFDIVRTSSLGYSVDNHYQYKSEGASFMSKSARPSLLITLLLCFSIVLSACAAGNTNTASGSNSTSPSPSASTAPAATDTPSSEAQTRTITTVKGDIEVPADPQRVVVLYLLGDVLALGVKPIGVSDVSEGAAFEKELNDVQKLGTWFEASPEAVLSLNPDLIIVPSDETYEVLKDIAPTVMVPYETMSAEERVAFIGEALGKENEAKTLFEGFHAKVAESKQKLQEAGILDHTVSIMEGGSKRSMAVVTSKQFGRGSQVIYEYLGMKAPAIIQEKVETSTEAVGEDVSFEVLADYSGDYMFRSSYEGMADLTQDPIWNSIPAVKAGRLINIDFGLSYYSDIYSLNAQLDYIVESLLAAPRVN
>NZ_CP009284.1|WP_042176742.1|3526405_3529531_+|GNAT-family-N-acetyltransferase
MLLAPEVVIEEYEPLRHAKSIAEMWNRSYESWGGDNSYQTEQSVIEEHENGTHLKLFLAVAGGEVIGYCSFSHYKEDSGAMYIPLLNVRPDYHGRKVGKRLVLRALEETISLGWPRLDLYTWPGNTKAVPTYKKSGFFWEKRDDSTHLMNFIPSVLQTAAVKPFFEKLDWYADSVREISVMPDGRKENGFDYFTYEWQKDDLKLVMEYERTGRGLRLIETEDYRIQASIPLQHQLPFGCSYPVIYEAVNKSGKPLTLQIKGISNPKISFELEDTRSVEATEKIEGQFFVHPLEEEQNPYQTHPVIEAELLINGLPAVFKLGIEPKYPVKLKLALPDRSMLYKGEAFELDVTAENEYAAETQFTFTLPQDSILAFSRPDVQITVPAKSRTTVAVPAVLKEYGIWNHKAEITAAADHREPAVIEQEVSLVFAGTHSAFGGRTEKGWIVNSGRYSVRLDKFSNTLELFEESQKAISLPFPKFGHPYTNEFNKLTAEQVTHCMEGEAIVLEARYRLDALRKGLQLTMLVRLYKNGIIERVLQIRNSAQTDWAEPLYLKESFGFSLEGGVIPYRGRFIDLKHGVDASSPDYWDVHGLTENWLYADDGSLPRGITWPAERSLIKDSWLYAVEHPLGNLPSGSTIRTEPLRIALGTWSSWKDFRSFAQLRGLPRTEQPGTERQLRLSLNGGNPFISGSAELALHEQKMSFLEGEIILSSKVDTAFKQSLTVTAEQQLAEAVLTFTPAENVQADLLQVQLDMETFESSESYLMLPVKGNGVGQNSSLTEHGEVLTADNGIIQIQVNSSFAPALYSLQVQGEEWLDSAYPVPQPKSWWNPWTGGVLAGVEGLSPRSLLEEPREAAFAGLTDSKGNAWSGVRVSIKITHNRKFQGLTLNHYFLLLPGVPVLASVVQIVQNTGAPLQPLTLQTAGFYKTGSVLKSSRGTVKNEAGETITYKAGRVQNETKSSGGIIHYSSNERRQRLSLASGPDKAAPELLVNTHVISSFITEKLFMRDGDTLFSTPQFYMISDLDIPDEAFRDLLSIKFNL
>NZ_CP009284.1|WP_042176744.1|3529552_3530422_+|amidohydrolase
MKIIDAHVHYSNIASFHETAQELANIDYSEKGLLEEFRRSGVIAGVGMGVTETVAGAFPDNEALSPMLLDLTGQLPGNLYTCVGINPLTLHQNGQLEALEQSLRQDNVVGIKLYAGYYHFNVGDEIYAPVYRLASEYQMPVVIHGGLTYSDRGLLKYSHPLSMEETFLKHRDITFMLCHLGDPWVMDTAALLEKNPNLYSDLSGWIVGDSAKVDRLLAEQTYTDHFRRAIVFAEKYDRLVFGTDWPLVPLEAYIKFVKHLIPEAHWEDVFYNNALQVFPKLEQLIGNLK
>NZ_CP009284.1|WP_042176746.1|3530468_3531599_+|FAD-binding-oxidoreductase
MKKVIIIGAGILGASTAYQLAKLGAKVLIIDRKDKGQATDAAAGIICPWLSQRRNQVWYRLAKAGARFYPGLISELKLEGETETGYARVGALSVHRDTDKLKQQEERARKRLEDAPEIGELTWRTEQETLEQVPLLAEGYHSLQVSGAARVDGRALRDALLRSARRSGARQIDGDAGLQFAGNCVTGAVVDGEIFAADTVIVCAGAWAAPLLQPLGIKLKVSYQKGQIMHVKVAEHTDTGSWPVVIPPTDQYLLSFDGGRIVIGATHENDIEGYDASVTAGGIQEVLNKGLELAPGLAKSSVQEVRVGFRPFTPGFLPVIGAVPGWEGLLAANGLGASGLTMGPFIGSQLAKLALGLIPDIELQDYDLSKAIEQQG
>NZ_CP009284.1|WP_042176749.1|3531627_3532113_+|nitroreductase
MSIVDIIKTRRSVKQFNPDPIGEADLLSWLETASYAPNHRMNEPWEIVMVGAETRAELKHKTDFGGAPVVLALLSKAAATPFERDENVMAVSCFAQNFLLAAHEAGAGAYWASLGALPHNRSILGVPEDYDVIGVFGVGYPADIPPLKPRTPVSVKMTTLP

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Crispr_ID: NZ_CP009284_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009284_8

4163335-4163441

Orphan

Consensus_repeat	Method
CCGCCGCCTTGTCCTTGCGGACGGCTGTCTGT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP009284_8

>merge|NZ_CP009284|8|4163335-4163441|CRISPRCasFinder
CCGCCGCCTTGTCCTTGCGGACGGCTGTCTGTGCGCGGAGCGCTGCTCTGCGGACGGTCTCCGGTACGCGGAGCACCGCCGCCTTGTCCTTGCGGACGGCTGCCTGT

>NZ_CP009284|8|8|4163335-4163441|CRISPRCasFinder
CCGCCGCCTTGTCCTTGCGGACGGCTGTCTGT	GCGCGGAGCGCTGCTCTGCGGACGGTCTCCGGTACGCGGAGCA
CCGCCGCCTTGTCCTTGCGGACGGCTGCCTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009284.1\|WP_042177493.1\|4164719_4165817_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NZ_CP009284.1\|WP_042177492.1\|4164379_4164688_-\|YlxR-family-protein	unknown	unknown	gnl\|CDD\|377288
NZ_CP009284.1\|WP_042177495.1\|4171021_4172470_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236327
NZ_CP009284.1\|WP_042177485.1\|4154217_4155207_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|131920
NZ_CP009284.1\|WP_042177484.1\|4152872_4154138_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP009284.1\|WP_042177489.1\|4160031_4161009_-\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	unknown	unknown	gnl\|CDD\|223691
NZ_CP009284.1\|WP_042177499.1\|4175968_4176742_-\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|184840
NZ_CP009284.1\|WP_042177486.1\|4155390_4157493_-\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_CP009284.1\|WP_042177490.1\|4161030_4161381_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP009284.1\|WP_042177482.1\|4150911_4152348_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|143479
NZ_CP009284.1\|WP_036656390.1\|4157714_4157984_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP009284.1\|WP_042177494.1\|4166555_4170887_-\|PolC-type-DNA-polymerase-III	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|234767
NZ_CP009284.1\|WP_042177487.1\|4158134_4159082_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP009284.1\|WP_038593427.1\|4165843_4166311_-\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP009284.1\|WP_042177483.1\|4152448_4152901_-\|dUTP-diphosphatase	unknown	unknown	gnl\|CDD\|234802
NZ_CP009284.1\|WP_042177498.1\|4175143_4175947_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NZ_CP009284.1\|WP_042177500.1\|4176821_4177376_-\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_CP009284.1\|WP_042177497.1\|4173981_4175121_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NZ_CP009284.1\|WP_042177488.1\|4159120_4160035_-\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|211339
NZ_CP009284.1\|WP_042177496.1\|4172552_4173827_-\|RIP-metalloprotease-RseP	unknown	unknown	gnl\|CDD\|272878

Protein	Function_ID	Function_description	E-value
NZ_CP009284.1\|WP_042177493.1\|4164719_4165817_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	0
NZ_CP009284.1\|WP_042177492.1\|4164379_4164688_-\|YlxR-family-protein	gnl\|CDD\|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	2.43333e-37
NZ_CP009284.1\|WP_042177495.1\|4171021_4172470_-\|proline--tRNA-ligase	gnl\|CDD\|236327	PRK08661, PRK08661, prolyl-tRNA synthetase; Provisional.	0
NZ_CP009284.1\|WP_042177485.1\|4154217_4155207_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|131920	TIGR02873, Uncharacterized_protein_YlxY, probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model. [Energy metabolism, Biosynthesis and degradation of polysaccharides, Cellular processes, Sporulation and germination].	1.05079e-112
NZ_CP009284.1\|WP_042177484.1\|4152872_4154138_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.15601e-123
NZ_CP009284.1\|WP_042177489.1\|4160031_4161009_-\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	1.13943e-61
NZ_CP009284.1\|WP_042177499.1\|4175968_4176742_-\|isoprenyl-transferase	gnl\|CDD\|184840	PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional.	6.4118e-157
NZ_CP009284.1\|WP_042177486.1\|4155390_4157493_-\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_CP009284.1\|WP_042177490.1\|4161030_4161381_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	1.11332e-54
NZ_CP009284.1\|WP_042177482.1\|4150911_4152348_+\|hypothetical-protein	gnl\|CDD\|143479	cd07563, Peptidase_S41_IRBP, Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors and facilitates its delivery to the RPE. Conversely, IRBP can promote the release of 11-cis-retinal from the RPE, prevent its isomerization in the subretinal space, and transfer it to photoreceptors. In vivo evidence implicates IRBP as a retinoid transporter in the visual cycle, suggesting a critical role for IRBP in cone function essential for human vision. IRBP is a dominant autoimmune antigen in the eye; IRBP proteolysis analysis has proven a useful biomarker for autoimmune uveitis (AU) disorders, a major cause of blindness. This family also includes a chlamydia-secreted protein, designated chlamydia protease-like activity factor (CPAF), known to degrade host proteins, enabling Chlamydia to evade host defenses and replicate.	1.068e-16
NZ_CP009284.1\|WP_036656390.1\|4157714_4157984_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	4.95041e-52
NZ_CP009284.1\|WP_042177494.1\|4166555_4170887_-\|PolC-type-DNA-polymerase-III	gnl\|CDD\|234767	PRK00448, polC, DNA polymerase III PolC; Validated.	0
NZ_CP009284.1\|WP_042177487.1\|4158134_4159082_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.28959e-125
NZ_CP009284.1\|WP_038593427.1\|4165843_4166311_-\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	5.89111e-62
NZ_CP009284.1\|WP_042177483.1\|4152448_4152901_-\|dUTP-diphosphatase	gnl\|CDD\|234802	PRK00601, dut, dUTP diphosphatase.	3.00917e-81
NZ_CP009284.1\|WP_042177498.1\|4175143_4175947_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	8.93927e-56
NZ_CP009284.1\|WP_042177500.1\|4176821_4177376_-\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	2.02712e-110
NZ_CP009284.1\|WP_042177497.1\|4173981_4175121_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_CP009284.1\|WP_042177488.1\|4159120_4160035_-\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|211339	cd02573, PseudoU_synth_EcTruB, Pseudouridine synthase, Escherichia coli TruB like. This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruB and M. tuberculosis TruB make psi55 in the T loop of tRNAs. Psi55 is nearly universally conserved. E. coli TruB is not inhibited by RNA containing 5-fluorouridine.	4.05213e-113
NZ_CP009284.1\|WP_042177496.1\|4172552_4173827_-\|RIP-metalloprotease-RseP	gnl\|CDD\|272878	TIGR00054, Putative_zinc_metalloprotease_slr1821, RIP metalloprotease RseP. Members of this nearly universal bacterial protein family are regulated intramembrane proteolysis (RIP) proteases. Older and synonymous gene symbols include yaeL in E. coli, mmpA in Caulobacter crescentus, etc. This family includes a region that hits the PDZ domain, found in a number of proteins targeted to the membrane by binding to a peptide ligand. The N-terminal region of this family contains a perfectly conserved motif HEXGH as found in a number of metalloproteinases, where the Glu is the active site and the His residues coordinate the metal cation. Membership in this family is determined by a match to the full length of the seed alignment; the model also detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	5.57224e-75

>NZ_CP009284.1|WP_042177490.1|4161030_4161381_-|30S-ribosome-binding-factor-RbfA
MSKIRAGRVGEQIKKELSQLIQGGLKDPRVGFVTVTGVDVTNDLSQAKVYLSVFGDAEQQNASLKAIEKANGFLRSELGKAIRLRHTPELIFKFDESVAYGSHIEKLLGEIKHEES
>NZ_CP009284.1|WP_042177489.1|4160031_4161009_-|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA
MQSYEQSLRQTREFLLEHDDYLVVSHVQPDGDAVSSTLAVGWLLSCLGKKYTMLNEGPIPKRMEYLWHAGEIVNLAEGELPRQYSNIICVDCADFQRVGLTQRHFSSDAVIVNIDHHPTNNGYGFITLIKPDAAATAEILFDLLKTFQVEWDLDIATAIYTGLLTDTGGFRYTNTSPKVMAAVSELLAMGVNGPELAENLLEEMTLAQVKVLNRALNTLQLSPEGDIAWLHVTPQDMMDCGAANEDLEGIVNYPRNIRGVEVGILFKVINEHAVKASLRSAGKVDVAALAQVFGGGGHTRAAGARIDGTLDEAVALVLQEVRRHL
>NZ_CP009284.1|WP_042177488.1|4159120_4160035_-|tRNA-pseudouridine(55)-synthase-TruB
MSELTGVLAVFKPAGFTSHDVVAKARRILGMKRIGHTGTLDPQVTGVLPLCLGRATRVVEYIQELPKEYVATLRLGLSSDTEDMTGTITESVDEVKVTEAEVLAVLNTFKGVISQVPPMYSAVKVDGKRLYELAREGKTVERKSREVEIYEIEMTGMVWNGNYPDITFRVLCSKGTYIRTLCVDIGRALGLPGVMVELTRTMSAGISASHCLTLEQIAEYKEAGTLDHHLIAADEAISHLSRHTVSEEKKKAALQGQRLSVRYVTPTVTDSGDFRLYDTAGEFLGIYKLDDTGAIAPVKVFAQR
>NZ_CP009284.1|WP_042177487.1|4158134_4159082_-|bifunctional-riboflavin-kinase/FAD-synthetase
MRTVTLSYPIPPETAALWAQPQVAALGQFDGLHRGHASVITSAVALARRQGVPAAVMTFHPHPKDVMGKGDYDGYLTPPKDKQEILAGLGVDILYIIEFNEQLSRVSPQDFVSVMLLPLQIVTAVVGFDFRFGYLGEGDADMLRELGQGIMSVETVPPFLLEGEKVSSSGIRRSLHSGDLTLANSWFGRCYHLRGIVGHGEKRGRTIGFPTANLQLEDHYVIPAKGVYAVKVFYKEEILYGVMNVGVKPTFHDGMSAPSFEVHLFDFASDIYGQELKVELQAFIRPERKFESIDALISQIAKDAGTAKELLGYSS
>NZ_CP009284.1|WP_036656390.1|4157714_4157984_-|30S-ribosomal-protein-S15
MALTQERKHQLIDEHKTHESDTGSPEVQVAILTENIVNLTDHLRTHKKDHHSRRGLLKMVGQRRKLLAYLKNKDIRRYSALIERLGLRR
>NZ_CP009284.1|WP_042177486.1|4155390_4157493_-|polyribonucleotide-nucleotidyltransferase
MEQRVEMQLGGRRLVLETGRLAKQANAAVMVRYGDTAVLCTVTASSEPKDLDFFPLTVNYEERLYAVGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPEGFRNDVQVLNMVMSVDQNCAPDIAAMIGTSAALSISDVPFDGPIGGVAVGRINGQFIINPDLAQQEASDIYVVVAGTKDAIMMVEAEANEVPEDVMLEAIMFGHEEIRKIVAVIEELVAVAGKEKMAVKLHAVNADVNTEVRAFAGDRLVEAVKIAEKHARQDAIDLVNSETVEYFVEKYIETPELLKDVKEVLHDIVKDEVRRLITHDKVRPDGRKLDEIRPIECDTALLPRTHGSGLFTRGQTQILSVCTLGALGDVQILDGIDPTETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEFPYTIRLVSEAIESNGSTSQASICASILAMMDAGVPIKAPVAGVAMGLIKDGEHVSILTDIQGMEDHLGDMDFKVAGTAEGVTAIQMDIKIAGIDRKILKEALEQAREGRLFILGKMMEAISAPRPSLSQYAPKIIIININPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIGSSDEAMIQKARGIIEGIVKEVQVGEIYVGTVRRIEKFGAFVELIPGKDGLVHISQLSTERVAKVEDVVAIGDTITVKVTEIDQQGRVNLSRKAVLTAESGAKA
>NZ_CP009284.1|WP_042177485.1|4154217_4155207_-|polysaccharide-deacetylase-family-protein
MKTDKAALVLACMAVVIGIGSTSGPVKEMLAQLKPQDALAVKAALAAEHSSKDLRAQVEQKAAELNVPPVDAAVDRVWKAIPGYNGLEVDVEATYRNSLQQVPGEGLKLVYRQTKPKISLNDLGANPIYRGNPAKPMVAFMINVAWGNEYIKPMLDILDEEQVKVTFFLDGSWLSKNRELAAEMLKRGHEMENHAYTHPNMSTLSRARATAEIQKTQMLLKESLGVTNQWFAPPSGDFDQETVEIAAALGLKTVLWTLDTVDWRKPSPESVVAKISAKAEPGTLVLMHPTASTSKALRGMIRAVKAKGLRLGTVSQTLSPDRIMPDDVE
>NZ_CP009284.1|WP_042177484.1|4152872_4154138_-|insulinase-family-protein
MEKIILSNGLRVVTEKIATGRSVSFGIWVRTGSRNENPLNNGISHFIEHMLFKGTDRFSAKDIAEEFDAIGGNVNAFTSKEYTCYYAKVLDEHLPIAVDVLSDMFFRSKMDAEELAKEKNVILEEIAMCEDTPDDLVHDLMCAAAYGEHPLAYSILGLKERLQEMTPDDLRAYMKEQYTIENTVISVAGNFDEGLVDLLERHFGGFDNHGQAPELTAPDYQGSLLFHRKKTEQNHICISLPGVRSGGPLQYPMVLLNNAVGGGMSSRLFQEIREKRGLAYSVYSYHSSQADSGLFTVYAGTAPKQTKEVTELVKEMMQELAVKGITEDELRKGKEQLKGSLILSLESTSSRMNRIGKNELMLGRHDTLDDMIDKISKVTMEDVNLLLDHMFAEPLALAMVGSTDKAIANVRRDDLVLSRSN
>NZ_CP009284.1|WP_042177483.1|4152448_4152901_-|dUTP-diphosphatase
MILSYHVQINKLPGNEDVQLPRKMSEQASGFDLHASVAEPVVLAPGERALIPTGIALAMPDGLEAQIRPRSGLAFKHGITCLNTPGTIDADYRGEIKVLLINLGQEPFAIARNERIAQMVFQAVPAVTLVEVDELTETQRGAGGFGHTGK
>NZ_CP009284.1|WP_042177482.1|4150911_4152348_+|hypothetical-protein
MKPKWKQAALLLVSAAAVAAAALYIKSADSRDSSGQAAGTPPAASAQSQGAPASDAPEKLVNPEQMKQDLDFLTETLVQVHPALINGWSSGQQQVISEAYDTIQTARTEEEFYFIVNTITSLLHDGHTNMHWELQNQKLLNLPLFWSREGLIVTEDRGTLHTGDIVTAISGRSIGDLEQELAGIIPAENNQWVRVQGTVLLRVEFMLRHLGLAADNQVEVTVTRGSGSITETLTLTDKPLQKEYSHYPKGEVPFSYSFEDELSLGIFQLNTCENTRKYQLTVKQFFDEVKKRGIQHIAVDLRSNGGGASSVIGEFLSYMDVKSYYSYGAIVRYSPQVKEAYGEDQDNGVVQSPSQLIKNDLKTEFPYKGKLYLLTSAHTFSSANMFAVIVQDNGLGQIIGEATGNQPSSYGDVLTFQLPASGIHFQASFKQFTRSAPERDPADSVQPDIEAYTTAKDILERRDAQLDKLREVVRADLK
>NZ_CP009284.1|WP_042177492.1|4164379_4164688_-|YlxR-family-protein
MKQKKVPLRKCVASQEMMPKKELIRVVRTPDGEVMIDLTGKKSGRGAYICGKLECFKLAQKNKALDRALKCQVSPEIYAQLARDFASVEEEFLAAKDSEDNE
>NZ_CP009284.1|WP_042177493.1|4164719_4165817_-|transcription-termination/antitermination-protein-NusA
MSMDFIEAMNELEREKGISKDVLFEAIEAALISSYKRNFNAAQNVRVDMNRNTGVIKVFARKLVVEEVLDARTEISLPAAREINPHFQLEDVAELEVTPRDFGRIAAQTAKQVVTQRIREAERGLIYNAFIDKEDDIVTGLVQRQDMRNIYVDLGKIEAVLPLSELMPGEKFKQSERIKAYITKVENTTKGPQIMLSRSHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVFSRNEEVDPVGSCVGPRGTRVQTIVTELRGEKIDIVRYSEAVQEYVANALSPSKVLEVQVFEAEKMARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSETQAEQEYGRPKTFSDEMHQDSVSID
>NZ_CP009284.1|WP_038593427.1|4165843_4166311_-|ribosome-maturation-factor-RimP
MSTPKSKIKQTVEQMLGSYLEDNGFELVDVEYVKEGSNWFLRIFVDKEGGIDIDDCGAISEYFSSKLDENDPIPEAYFLEVSSPGAERPLKKAADVAKAVGKDVYVTVYEPIQGLKEFEGRLLSFENEELLISAGKKEHVVPYAKVASARLAIIF
>NZ_CP009284.1|WP_042177494.1|4166555_4170887_-|PolC-type-DNA-polymerase-III
MEQNAERRRRFELLMKQGEIPPALIDPYFLDGQIERVEISRGNKDWHIVITKSSLVPAQMYRTFCLRMREKLQHIAKVSFLFLYDVEKVGRQEVVQEYWGLFLEWAQREIPSVNGWLTRSAQELQDSTLVLSLNDKMSLELARKKGIEAAIIKFYNKYFGMELKVKLQIAENETSKADAYEEFQQKLQQEQREIVELMMMNSEPEEPEDETDPNEVIKLQVGYEIKEQATPILQIQDEEKKITIQGTIFGLESKELRNGNTLFTYFITDFTDSLQIKMFAKTKEDLKIMSQLANGKWVRARGKVEYDRFMQIPELVMIPSDLSEVNAPPARKDNAKQKRVEFHLHTTMSTMDAVTPIGEYIKTAAKWGHPAIAVTDHGNVQSFPEANHAVHKHKIKMLYGVEANVVNDAVNIVENAQPMDLKTATYVVFDIETTGLSITRNNITELAAIKMCEGKEIGRYTTFVNPHEKIPYHIQQLTNITDEMVKDAPDLAPVLTDFVEFVGDAILVAHNARFDMGFIQASLLKLGRPELTNPSLDTLELARLLYPSMKNHRLNTLADKYKVLLESHHRAVDDTIALGGILTGLLNDAEKLKNLTRLERLNDYVGNDLSNVRPFHCGIYALNPAGKKNLYKLISMSHTEHFKRVPCIPKSKLEQYRDGLIVISGCERGEFFETVLNKTVEEAMEVAQFYDVLEIQPLTMYMHLVDKGFVATAEDLRDVVRKICEIGEQMNKPVIATGNVHYLEPRQKLFRDITIHGITGFSPLKDQVKPDAHFRTTDEMLTEFEFLGAEKAMEVVVTNTVALAERFEEYDLFPSELFTPNIEGADDEIRSTCYNTAKSIYGEDLPEVVVARLEKELAPIIKFGFSANYLISERLVKKSNQDGYLVGSRGSVGSSVVATFLGISEVNPLPAHYICLNPECKHNEWFLDGSIPSGFDLPDKTCPDCGGRLKGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNFTKTMFGPDNVFRAGTIGTVAEKTAFGFTKKYEEHHQKRWRGAEVNRLAAGCTGVKRSTGQHPGGIVVLPDYMEIEDITPVQFPADDVTAEWKTTHFDYHAFDANLLKLDILGHDDPTMMRMLQDLTGVDPTTIPMNDPKVMSMFNSTEALGVRPEQIRTPVATYGVPEMGTKFVRQMLIESKPSSFADLLQISGLSHGTGVWLGNAQELIKNNTCNIKTVIGCRDDIMLYLIYKAGMDASLAFKITESVRKGKGLPPEWIEEMKKCKVPQWYIDSCLKIQYMFPKAHAAAYVISAVRTAYFKLYHPIEYYATYFSVRAADFDIELCCQGYEAINRQIGEIEGKGFQALPKEKAMLPVLEMALEMTARGFSFKNIDLYHSDANRFTVDGKSLIPPFSALAGIGENAAINIAAAKDAGEFLSIEDFQQKSKASKTVIELLTGMGCFRGLPESNQLSLF
>NZ_CP009284.1|WP_042177495.1|4171021_4172470_-|proline--tRNA-ligase
MAKDKQFVTEITPQSEDFSRWYIDVIKKADLMDYSPVRGCIVFKPEGYEIWEHIQEEMNRRLKATGHRNAYFPVFIPESFFQKEKDHIEGFNPELPWVTEAGGDVLEERLAVRPTSETMFGHMYSKWIQSYRDLPVLINQWANVVRWEKRTLPFIRTTEFLWQEGHTAHENETEAREETMRMLENYRDFVETFLAIPVVTGQKTPSERFAGAVDTYSIEAMMKDGRAVQAATSHYLGTKFAEAFEIQYLSRENVLEHVHTTSWGSTTRLIGSLIMVHGDDRGLALPPKVAPTQVIMIPIGPPKTREAVIGRTDELFKQLKDAGVRVRVDDRADLTPGWKFNEYEMRGVPVRLELGPRDMENGVCVLVSRITGEKKVVQQDNLVEEVQAMLEQVHNEMFERALKFREDHFYSSDTLEEMKASMEEKRGFALAGWCGTEECEDKVKEVTGAGSRNIPFNPAEQKTTCICCGKPAKHTVVFAKAY
>NZ_CP009284.1|WP_042177496.1|4172552_4173827_-|RIP-metalloprotease-RseP
MEMVRVVFLTVLMFFVLVTVHEWGHYYFARRAGILVREFAIGFGPKLFSYRRGETQFTLRLLPFGGYARMAGEDPEIVEIGQGQTIAVRLGQDNKVKNIYLDSLDTRRNVIRGEAQFTDLEDELKIRLDVDGEVTTYDVHPQAMMIKGGQQTQIAPKDRQFGSKTVGQRALAIVAGPVMNFILAFVLFALHLQLAGIPIENPTVVRIGEISAGMPAEEAGLQVGDIVVSVNGEQIGGDYMKMINLTSASKGEEMNWVLKRGNETYEVTMIPRTMEGQEGGKVGVTRDVETRKAGFGETITKSGTAMVTTTELIFTGFKQLINNFNLDDVSGPVGTAQMTGRIAQQGIEYLTYWAAILSLYLGIFNLLPVPALDGSRLVFLGVEALRGKPVDPNREGMVHFVGFALLFLVVIVVTYNDILRLITG
>NZ_CP009284.1|WP_042177497.1|4173981_4175121_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MKKISILGSTGSIGTQTLDVVAMHPEQFTVEGLAAGSNTDLLLEQVRRFNPRRVSVSTKQHADQLRSSLPSGVELYYGNEGLVEIAAGGDAQTVVTALVGSIGLESTLAAIEAGRHIGLANKETLVTAGHLVTELAGRKGVKLLPVDSEHSAIFQCLNGENRADIASITVTASGGSFRDYTRDQLVNVTVEDALRHPNWTMGAKITIDSATMVNKGLEVIEAHWLFNLPYEKINVLLHPESIIHSYVEFCDSSIIAQLGSPDMRVPIQYALTYPDRWPSPAARLSLAETGRLTFREMDFVRYPLLKLAIECGKAGGTASTAYNAANEVAVARFLNREISFLHIEEIVDKVLQQHQNVNSPDLQQIKHCDTVTREIAAKL
>NZ_CP009284.1|WP_042177498.1|4175143_4175947_-|phosphatidate-cytidylyltransferase
MKQRLITGIVAGALFLGLCAIGGWSYHLLLTAMALVGLYEFVKMTGLTPFSGTALLGYASIVGFMIPWELLDVPAWLSWEQGVWLLLLVLLLVTVFSKNKLDIKLIALLFTGIVYIGTGFSYMGTARAAGDGHGLFWTLMLLCCIWGSDAGAYFVGRSFGKNKLWPAISPNKTVEGALGGVAISVIISVLFALFAPDLLTIGRALLIGLSAAVLGQLGDLVQSAYKRVYGIKDSGSLLPGHGGILDRCDSWIIVFPFVHIVMLMPYY
>NZ_CP009284.1|WP_042177499.1|4175968_4176742_-|isoprenyl-transferase
MIKRIQAWLSRNDRQEEQPAEISPDNIPRHIAIIMDGNGRWAKRRGLPRIVGHQNGMKAVKRATIAANDLGVEFLTMYAFSTENWKRPKDEVDFLMKLPVEFLALELDELIEKNVQVRVMGDSEALPSHTRKAMEEAVERTRHNNGLVLNFALNYGGRKELEDCMRELGNDIKAGRLTPEDITSELIDSRLLSGGLPDPDLLIRTSGEMRLSNFMLWQVAYSEFWFTDAYWPEFDKKHLTQAVAEYQRRTRRYGGLK
>NZ_CP009284.1|WP_042177500.1|4176821_4177376_-|ribosome-recycling-factor
MPQTVKKNAEERMEKAIASLKRDLATLRAGRASTALLDRIQVEYYGAPTPVNQLANISTPDSRTLLIQPWDRSSVADIERAIMKSDLGLTPANDGTIIRLSIPALTEERRTELVKFTKKFGEEAKVAIRNIRRDANDDIKKMEKNGISEDESRGHQEDIQKSTDKFIAEVDKVLLSKEKEIMEV

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Crispr_ID: NZ_CP009284_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009284_9

4521904-4521994

Orphan

Consensus_repeat	Method
TTCAGTGAGGTTAAGCTCACAAAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009284_9

>merge|NZ_CP009284|9|4521904-4521994|CRISPRCasFinder
TTCAGTGAGGTTAAGCTCACAAAACTCAAGGCTATGCTTACGAAGCAAGTTTTGTACGCAGATCATTCAGTGAGGTTAAGCTCACAAAACT

>NZ_CP009284|9|9|4521904-4521994|CRISPRCasFinder
TTCAGTGAGGTTAAGCTCACAAAACT	CAAGGCTATGCTTACGAAGCAAGTTTTGTACGCAGATCA
TTCAGTGAGGTTAAGCTCACAAAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009284.1\|WP_042178105.1\|4515469_4516894_-\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
NZ_CP009284.1\|WP_042178120.1\|4524231_4525527_-\|asparagine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235176
NZ_CP009284.1\|WP_042178122.1\|4525548_4526757_-\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NZ_CP009284.1\|WP_042178096.1\|4510681_4511335_-\|GerMN-domain-containing-protein	unknown	unknown	gnl\|CDD\|378464
NZ_CP009284.1\|WP_042178137.1\|4532055_4532709_-\|redox-sensing-transcriptional-repressor-Rex	unknown	unknown	gnl\|CDD\|235486
NZ_CP009284.1\|WP_042178130.1\|4529253_4529796_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379491
NZ_CP009284.1\|WP_042178103.1\|4514830_4515436_-\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NZ_CP009284.1\|WP_042178100.1\|4513048_4514641_-\|AMIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|119407
NZ_CP009284.1\|WP_042178098.1\|4511443_4512886_-\|AMIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|119407
NZ_CP009284.1\|WP_042178109.1\|4517770_4518682_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP009284.1\|WP_042178124.1\|4526753_4527626_-\|NAD(P)-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|180269
NZ_CP009284.1\|WP_042178117.1\|4522011_4522887_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NZ_CP009284.1\|WP_042178126.1\|4527758_4529261_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273520
NZ_CP009284.1\|WP_042178107.1\|4517111_4517672_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042178135.1\|4530767_4532069_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|238623
NZ_CP009284.1\|WP_042178115.1\|4520653_4521901_+\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NZ_CP009284.1\|WP_042178118.1\|4523483_4524209_-\|DnaD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226445
NZ_CP009284.1\|WP_042178131.1\|4530180_4530699_-\|DUF5590-domain-containg-protein	unknown	unknown	gnl\|CDD\|227656
NZ_CP009284.1\|WP_042178113.1\|4519466_4520570_+\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
NZ_CP009284.1\|WP_042178111.1\|4518831_4519029_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009284.1\|WP_042178105.1\|4515469_4516894_-\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NZ_CP009284.1\|WP_042178122.1\|4525548_4526757_-\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NZ_CP009284.1\|WP_042178096.1\|4510681_4511335_-\|GerMN-domain-containing-protein	gnl\|CDD\|378464	pfam10646, Germane, Sporulation and spore germination. The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. The domain is found in a number of different bacterial species both alone and in association with other domains such as Amidase_3 pfam01520, Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.	7.15423e-13
NZ_CP009284.1\|WP_042178137.1\|4532055_4532709_-\|redox-sensing-transcriptional-repressor-Rex	gnl\|CDD\|235486	PRK05472, PRK05472, redox-sensing transcriptional repressor Rex; Provisional.	2.83546e-109
NZ_CP009284.1\|WP_042178130.1\|4529253_4529796_-\|hypothetical-protein	gnl\|CDD\|379491	pfam14155, DUF4307, Domain of unknown function (DUF4307). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 132 and 153 amino acids in length. There is a single completely conserved residue C that may be functionally important.	0.00391931
NZ_CP009284.1\|WP_042178103.1\|4514830_4515436_-\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	1.19633e-126
NZ_CP009284.1\|WP_042178120.1\|4524231_4525527_-\|asparagine--tRNA-ligase	gnl\|CDD\|235176	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.	0
NZ_CP009284.1\|WP_042178098.1\|4511443_4512886_-\|AMIN-domain-containing-protein	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	4.00592e-77
NZ_CP009284.1\|WP_042178109.1\|4517770_4518682_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.07215e-59
NZ_CP009284.1\|WP_042178124.1\|4526753_4527626_-\|NAD(P)-binding-domain-containing-protein	gnl\|CDD\|180269	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated.	5.97001e-109
NZ_CP009284.1\|WP_042178117.1\|4522011_4522887_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	2.65968e-89
NZ_CP009284.1\|WP_042178126.1\|4527758_4529261_-\|AAA-family-ATPase	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	5.90194e-144
NZ_CP009284.1\|WP_042178100.1\|4513048_4514641_-\|AMIN-domain-containing-protein	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	6.84061e-61
NZ_CP009284.1\|WP_042178135.1\|4530767_4532069_-\|amidohydrolase	gnl\|CDD\|238623	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.	0
NZ_CP009284.1\|WP_042178115.1\|4520653_4521901_+\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NZ_CP009284.1\|WP_042178118.1\|4523483_4524209_-\|DnaD-domain-containing-protein	gnl\|CDD\|226445	COG3935, DnaD, Putative primosome component and related proteins [DNA replication, recombination, and repair].	5.38347e-39
NZ_CP009284.1\|WP_042178131.1\|4530180_4530699_-\|DUF5590-domain-containg-protein	gnl\|CDD\|227656	COG5353, COG5353, Uncharacterized protein conserved in bacteria [Function unknown].	9.79411e-15
NZ_CP009284.1\|WP_042178113.1\|4519466_4520570_+\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	0

>NZ_CP009284.1|WP_042178115.1|4520653_4521901_+|glutamate-5-semialdehyde-dehydrogenase
MSEVVKKASLAKQTTGVLAGLTTDQKNEALLVMAAALRQEAESIIAANADDLERGRKAGTPESMLDRLALDVSRINGIAEGLQQITDLPDPIGDTLEAFERPNGLSIEKIRVPLGVIGIIYEARPNVTVDAAGLCLKTGNAVVLRGGSSALSSNRRIVEVLHKALAQTSLPADAIQLIEDPNRSSVDEMLKLNGLLDVIIPRGGSSLIQNVVLNATVPVIETGAGICHTYLDKGSDPEMAEQISLNAKAQRPSVCNSMETLLVHRDYAAEHLSALGEAFRKVNVELRGCPETVALIPWAVPVTAEDFATEYNDYILNIQIVSGLDEALKHIDEYSTKHSECIVTENAEHAARFLQEVDAAAVYHNASTRFTDGFEFGFGAEIGISTQKLHARGPMGLPALTSCKYKIRGTGQIRG
>NZ_CP009284.1|WP_042178113.1|4519466_4520570_+|glutamate-5-kinase
MAIRIVVKIGSSSLTGPEGGLNREAVAFFAAELAALRQDGCEVLLVTSGAVAAGFRGIGYPSRPKLLHEKQAAAAVGQVMLMQAYQEAFAQHGLPTAQILLTRTDFCSRRAMNNAMMTVEELLRQGAVPVFNENDTVSVDELKFGDNDTLSALVANLLKASHLLVLTDMDGLYSGDPRKNPEAIRFSRIQEITPEIYAYAGGAGSSVGTGGMRSKIDAAKIATRGGVPVFIGRASEPGDLGLAAAGNGKGTYFDTTLSSLPVKKQWLGFMSTPLGSLYVDEGAVEALLHGGHSLLPVGVKRIEGSFHSGDVVEVLGPDGALLGRGIVNYDDAQLRSIQGLPSREIVPRLGEVHRLEVIHRDEWITLR
>NZ_CP009284.1|WP_042178111.1|4518831_4519029_-|hypothetical-protein
MSKDSKVAQEQTENAKEAAEFQNQAIRDFVEERAADSKTKGPVDESTARMPDNQNRMITQHNRQM
>NZ_CP009284.1|WP_042178109.1|4517770_4518682_+|LysR-family-transcriptional-regulator
MELRQLQYALQIAAERNFSRAAEKLHVAQPSLSQQLSKLEKELGVMLFQRNTSSVELTHAGERFVEQAEVILSAVELLRQEMSDISQLRTGRVVVGSMPITGAHLLPHVLPVFKQNYSDVEISLLEDSSMNLEKLTAGGQTDLSLLSLPLEIPTLAYEVLGEERIDLAVPPDHPLASRKAAGIRTSLEELKDEPFIVLKEGQGFRKMTMELCRKAGFEPQVVFQSNNMETIQSLVATGMGVTLVPHFIARAPRSEFVPVYLPLAEPVPSRTLVIAYRRGRHLSKAAEVFIETFKNTVAGLAEA
>NZ_CP009284.1|WP_042178107.1|4517111_4517672_+|hypothetical-protein
MKKPFYKSWLFWVVVVLLGSIVGQLAARNKPDDQTAPSATQQAQRTAAADTPADQAAGNPSVSWESAIKQIAQSDTESAQKADAVLVLAKNYSPSPEELQDFESQIVEEYNAGNYLAHIEDAEYMLVNLFKAAVVESIHSDGEPVRAFASGFSHNISNIFRGTDTVEGTSIKANEAEMDKTLAEMK
>NZ_CP009284.1|WP_042178105.1|4515469_4516894_-|3-isopropylmalate-dehydratase-large-subunit
MSNKTMFEKIWDNHVIHSEEGKPSIIYIDLHLVHEVTSPQAFEGLRLSGRKVRRPELTFATMDHNVPTKDRFNIKDPISKQQIDTLSQNCRDFGVRLFDLNDIDQGVVHVMGPEIGLTHPGKTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQCLQQSKAKTMEVRFTGSRNPGVTAKDMILGVIAKYGTDFATGYVIEYTGEAIRELSMEERMTVCNMSIEGGARAGLIAPDDTTFEYLRGREYVPQGEAFDAAVATWRTLVSDEGAQYDTVVEFDVETLIPQVTWGTSPGMGTDISSSVPNPADFTTENERKAAEKALEYMDLAPGTPMSEIGIDYVFIGSCTNGRIEDLRAAAQVAKGHKVSDKVTAIVVPGSGRVKMQAEKEGLDKVFTEAGFEWREAGCSMCLAMNPDVLQPGQRCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAIKGRFTDVRDWNYKTEAVNA
>NZ_CP009284.1|WP_042178103.1|4514830_4515436_-|3-isopropylmalate-dehydratase-small-subunit
MEAFKKIHGIVAPVDRVNVDTDAIIPKQFLKRIERTGFGQFLFYEWRFDEEGNDNPAFEMNKPRYEGASVLISRANFGCGSSREHAPWAIMDYGFRVVIAPSYADIFYNNCFKNGILPIKLTEAQVDDLFIRTAEHEGYKLNVDLENNTLNDDYGLSISFELDEHRRQFLLQGLDDIGLTLKHADEISAYEERHAAKLFAR
>NZ_CP009284.1|WP_042178100.1|4513048_4514641_-|AMIN-domain-containing-protein
MRRAGQRVLLLLLLPLLLLSFAGREAAAAGSGAGRIIMDNQELSLPQGIRLENVNGSVMIPIRVVVENLGFEVLWEQKSKKVTVQQDGKTVQLAVGSKTAEADGVTLTLNAAPKQNGGTVLVPIRFVSEQFGLKVGWDNSDKTVYLSGGQAGSTVPSVDPLPAVTAAPQPMATAAPQPAASPSAAPAPTAVTGQDDDITAGPASTPIPGSAGNVAVTPQVLGAVFSENRLIVAAAGGAKPAVSRLSGPDRIIVDFAGASFAADFVGSLPGVAPNGTPQGKLDVTGYPLVTEVRYALFSTSPSTVRFVIQTAGNQPYQLSTDDSTGLVTIDLNAVNSGTSPASGTGSLGKPVVVLDAGHGGKQPGAVSPNGKLEKDVNFAVANKVGALLAQDGKVDVVYTRTTDLTLGLADRVKIAEAARASLFISFHGNSLDVTYPNREKINGSETYYSRTESLPLAQILHKHLVAGTGFKDNGVRSKSLHVTRETTMPAVLLEIGYLTNPGNEAAMYTETLQNNLAKELVAGIYEYLGL
>NZ_CP009284.1|WP_042178098.1|4511443_4512886_-|AMIN-domain-containing-protein
MKKFAFTLLLMLFVLVLPEHGQAAAANNKIFLDGKELTAGQNAPVENVGGSVMVPLRMISENLGYKVDWDQSSKTVTISQQLTTIKLVIDQTAASVDDKTVLLANAPLNRNGTTLVPIRFISEQFGLTVSWDNTQKTVTLITPETGGNNTGSEGGAADGGSTVVVPPTEPAKNLTMVNGISFNENRLTIAMEGNAVPKVSKVGGPDRIVIDLENATFSDLFGTGQVLDPNLNGSLAVTGYPDVTAVRYSLYSTSPYTVRFVIDTTSSKNYSVEVTGDTSRLVVVDLNAVVTDNPSTQPGNNGRKLVVLDAGHGAKDSGAVGVTGKYEKNFNLAIVLKTAELLKKENNIDVVLTRSDDTFLELKDRAAIANNLNADLFISVHANSSNSSSASGTETYYQRESSKALANVMHKYLVQATGLSDRGVRYGNFHVIRETKMPAVLLEAGYLSNKGDESALFTESLQNKIAAGIVSGIKEYLGLK
>NZ_CP009284.1|WP_042178096.1|4510681_4511335_-|GerMN-domain-containing-protein
MNKKITYTAVSAVLLMVIAGCGDKPTAAPAAEAAPSSTAAVSGVEGTTGNGADGAEGTVTPSVAPQAEPSPSPAATAEPAKPEKQSQSIEVYFTDPQQLDLVPATVTISFGNETEKYTESFKALQTSSNADQVTLWGGIELKSLEFKDGQVTLDVHKPDEAQLGAGGEAMAVSSLAKTFFQFSEVSSIELLVDGEQVESLMGHVDLEHPITRENSGL
>NZ_CP009284.1|WP_042178117.1|4522011_4522887_+|pyrroline-5-carboxylate-reductase
MCQQPSTPLIKEQIVFYGAGSMAEAIVRGMIARSVIASDSITMLNRSSSERLAELRSRYGVQASNDPQQKTEILKNAQVIVLAMKPKDAAEALRGLAPLLSPEQIIVSVIAGLTIRTIQGLLGTQQPVVRTMPNTSSTIGLGATGIAFSKEVDESGRRLGLNIFESVGITSVIEEERMEILTGISGSGPAYIYYMMEAMTAAGIRGGLTPEQSSELTVQSVLGAARMVQQTGEDPASLRKKVTSPNGSTQAAIEALEKGDFFETVISAVNRCAERSREMGAAVEKELFKNQ
>NZ_CP009284.1|WP_042178118.1|4523483_4524209_-|DnaD-domain-containing-protein
MDGKGWNTWGEGAAFGLQHGMAVIPYALLKYYRKLNLSSDETMLLIHMLSFRQVEGIEFPSLEDLQSVTGRSISVIAGELQKLMKEGFISIDGANDELRDLHYEQYNFTGLFNKLGNVLAEAAQEAADGRGSGAQHSGHAVTRIAGNSPAAAEPESRNLFSIFEKEFGRPLSPMECETISGWVDQDRYPEELILLALKESVFAGKVHFRYIDRILLEWSRNRVKNAQDVKNYNQKFRGGGR
>NZ_CP009284.1|WP_042178120.1|4524231_4525527_-|asparagine--tRNA-ligase
MANKSVIKNVNEHVGESVVIGCWVNNKRSSGKIQFLQLRDGTGYIQGVVVKSEVPEQVWDDAKSLTQESSLYVTGIIREEPRSQSGYEMTVTGIEVLHLTENYPITPKEHGVDFLMDHRHLWLRSSKQRAVLVIRAEIIRAIQQFFNENDFTKVDPPILTPTSAEGTTNLFHTKYFDEDAYLTQSGQLYMEAAAMALGKVYSFGPTFRAEKSKTRRHLIEFWMIEPEMAFTDHEESLKVQEDFISFIVQSVLTNCRAELEAVGRDVSKLENIKAPFPRITYDDAIKFLNDNGHEIAWGDDFGAPHETAIAEANDKPVFITHYPASFKAFYMKPHPERPEVVLCADMIAPEGYGEIIGGSQRIDDPALLEQRFKEHNLSMDTYKWYMDLRTYGSVPHSGFGLGLERTVAWICGLDHVRETIPFPRTLYRLYP
>NZ_CP009284.1|WP_042178122.1|4525548_4526757_-|acetate-kinase
MNVLVINSGSSSLKYQLYNMTDESVLAKGLVERIGMDSSILTHKPTGKQEVTEVSEILEHNTAIRKVLACLTDSVHGVISSIEEINAVGHRVVHGGEYFKESSLVSGDAKSKIRQLFDLAPLHNPAAVMGITATEINMPGVPQAVIFDTAFHQTMPEKAYMYAIPRVLYNKYKVRRYGAHGTSHDFVSKAAAEYLDRPLEDLKIITCHIGNGASVTAVQGGVSVDTSMGMTPLEGLMMGTRSGDLDPAIVPYVMNKEELSVGEVNSMLNKHSGLLAISGVSSDMRDIIDGAEKGEANSTLAFEMYEYRLRKYIGSYAAAMNGVDIIVFTAGVGENASLLREKVLNNLTFLGIELDVEANKVRSGDPRRISTADSKVQVLVVPTNEELVIARDTYRLVQGING
>NZ_CP009284.1|WP_042178124.1|4526753_4527626_-|NAD(P)-binding-domain-containing-protein
MKFKKIGVIGGGTMGQGIAEMLAAKGLDVLLVEKNAERLDYSYEMIETSLDKQLEKWAITQAEKKLILSRIQKVTHFAELSSCDMVIETITEDLEDKQKVFNQLDQVCPSHIILASNTSTLSLTELASSTMYPERVIGMHFIHPVGKVDLVEIVRGLKTSESTFEDTKTFVDEIVEKKGVMIYESPGFVTSRLICLFINEAMHVLQEGVASPEDIDDAMRIGYQFQHGPLEMADRFGLDSVLAALENMFREYGELKYRPSTILKKMVRAGQLGAKSGEGFFKYDKDGDRI
>NZ_CP009284.1|WP_042178126.1|4527758_4529261_-|AAA-family-ATPase
MPKYWKEVLAGFAPVLLIFMAFVGINIVPVIIAAGMVAALLVIAHLRGGLTVNAGADKKRKKNGPSKLTFEEIGGQDNAKQELREALDFLIRHEEISKFGIRPLKGILLTGPPGTGKTLMAKAAAHYTNSVFVAASGSEFVEMYVGVGAGRIRDLFKDARTRAVKENKQSAIIFIDEIDVIGGKREGGQQREYDQTLNQLLTEMDGIYNSDTPRILLVAATNRKEMLDSALLRPGRFDRHIQVDMPDKKGRKSILDLHAKNKPLHPAVDLDRIAEEAYGFSGAQLESVMNEAAIYMMRENLTQVEQRHLSSAIDKVMMGEKTDRETNQEEKRRVAIHELGHAIMAELLRPGSVSQVTLTPRGQALGYVRHNPQTEQYLYTKDYLEHQIMIALGGAASEEMYYGGRSTGSRGDFDQALNIVETMMKSGLTSLGIANLQMVTTEELMKENSKILDELMIRTRDLLEHQRNIFDYSLDILMKEEVLSGEQFRCQFRDSVKLPA
>NZ_CP009284.1|WP_042178130.1|4529253_4529796_-|hypothetical-protein
MKLRLMPVLLTSLLSAALLFGGWYAYRQFAVQEPLQKIVSSYEGVNESHISINRNEVTLKLELEPGTKLRELVQYVNTEGKSAMGGRTLKLDVDQNSSQLLDEYWEKAMFSVAEAMESRKYTLIPAKLDGLKTQNTEYKDVTATTEIDDNNVYVSLSDGKQSKFIILPRVPGSMGVWNNA
>NZ_CP009284.1|WP_042178131.1|4530180_4530699_-|DUF5590-domain-containg-protein
MRKRKKWLPLAVSAVLLLLFGLGQFYAFIMKDQWAERSAAKEVARARAGLTEVTKAQKSVWDENSAYWVLKGTNEAGTRLMVWVRFTLDGKPAGGDNDVYAAELDGGTSEQQMQDRLAAELPGADIRRLLPGVFNGEYVWQVFYKQEGRYYYRFYRFADGTAIGDGYSLPSQ
>NZ_CP009284.1|WP_042178135.1|4530767_4532069_-|amidohydrolase
MSSNKTIIVNGRFLVPGSLKPVLSGYMTIEDDLITYIGEDKPAAEEGVLTVDGSRLLFMPGLVNTHGHAAMSLLRGYGDDMVLQTWLQEKMWPMEAKFTGDDVYWGTALSVLEMLKGGTTTFLDMYDHMDRVAEVTELSGIRAVLMRGAIGLCPEDVQNQKLAEAVEFARSWHGKADGRITAMLSPHAPYTCPPDFFMKFVQAAHDLDLPMHTHMSETRHEVEQNVADYGLRPVAHLEKLGMFTRPSLIAHGVHLNDEEIEILAKYNVGVSHNPGSNLKLASGVARVPELLKAGVKVSLGTDGAASNNNLDMFEEMRLAALIHKGVSGDPTAVPAPEALLMATEYGASSIYLANVGRLAAGMKADFIAIDIDQPHLLPHSDLLSHAVYSASAKDVAHVWVNGKQVVKDGQCLTLDEEEIRRKAQETFESLLKR
>NZ_CP009284.1|WP_042178137.1|4532055_4532709_-|redox-sensing-transcriptional-repressor-Rex
MKSDKISEAVVRRLPVYLRFLNDLQKREIATVSSQELGQKLDLNPAQIRKDLAYFGDFGRKGIGYDVSYLIEKIRHILKLDQQINVALVGAGNLGHALSNYNAYLKDTMKITAIFDSYAPKVGQKINSLTVQPMEELGRTIREQGIRIGIITVPDSEAQNVADILVESGIEAILNFAPVILKTPPTIRIHAADFTTDLQSLAYYLHDGKDEIRDEQQ

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Crispr_ID: NZ_CP009284_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009284_10

4562500-4562587

Orphan

Consensus_repeat	Method
TATGGAGCATTCTCTGCTCGGCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009284_10

>merge|NZ_CP009284|10|4562500-4562587|CRISPRCasFinder
TATGGAGCATTCTCTGCTCGGCTCTTCTTCGTAATAAAACTAGCTTCGAAAGCATCCGCTTAGGTATGGAGCATTCTCTGCTCGGCTC

>NZ_CP009284|10|10|4562500-4562587|CRISPRCasFinder
TATGGAGCATTCTCTGCTCGGCTC	TTCTTCGTAATAAAACTAGCTTCGAAAGCATCCGCTTAGG
TATGGAGCATTCTCTGCTCGGCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009284.1\|WP_042178214.1\|4570795_4571404_-\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|180312
NZ_CP009284.1\|WP_042178205.1\|4567612_4568413_-\|protein-glutamate-O-methyltransferase-CheR	unknown	unknown	gnl\|CDD\|224271
NZ_CP009284.1\|WP_042178176.1\|4553740_4554334_-\|zf-HC2-domain-containing-protein	unknown	unknown	gnl\|CDD\|379219
NZ_CP009284.1\|WP_042178208.1\|4568973_4569942_-\|heptaprenyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|131795
NZ_CP009284.1\|WP_042178178.1\|4554339_4554927_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236608
NZ_CP009284.1\|WP_042178185.1\|4557879_4558701_-\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|237285
NZ_CP009284.1\|WP_042178190.1\|4559893_4560556_-\|phosphoribosylanthranilate-isomerase	unknown	unknown	gnl\|CDD\|238237
NZ_CP009284.1\|WP_042178207.1\|4568440_4568884_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_CP009284.1\|WP_042178188.1\|4558700_4559897_-\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NZ_CP009284.1\|WP_042178216.1\|4571400_4572273_-\|UbiA-family-prenyltransferase	unknown	unknown	gnl\|CDD\|237247
NZ_CP009284.1\|WP_042178192.1\|4560548_4561379_-\|indole-3-glycerol-phosphate-synthase-TrpC	unknown	unknown	gnl\|CDD\|234710
NZ_CP009284.1\|WP_042178194.1\|4561368_4562409_-\|anthranilate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234682
NZ_CP009284.1\|WP_042178174.1\|4553000_4553588_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP009284.1\|WP_042178200.1\|4564867_4565971_-\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|234565
NZ_CP009284.1\|WP_042178211.1\|4569938_4570799_-\|menaquinone-biosynthesis-protein	unknown	unknown	gnl\|CDD\|270352
NZ_CP009284.1\|WP_042178202.1\|4565973_4567143_-\|chorismate-synthase	unknown	unknown	gnl\|CDD\|235438
NZ_CP009284.1\|WP_042178183.1\|4556727_4557825_-\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235106
NZ_CP009284.1\|WP_042178181.1\|4555584_4556679_-\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|235824
NZ_CP009284.1\|WP_042178198.1\|4564502_4564874_-\|chorismate-mutase	unknown	unknown	gnl\|CDD\|377905
NZ_CP009284.1\|WP_042178196.1\|4562612_4564166_-\|anthranilate-synthase-component-I	unknown	unknown	gnl\|CDD\|273142

Protein	Function_ID	Function_description	E-value
NZ_CP009284.1\|WP_042178214.1\|4570795_4571404_-\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|180312	PRK05920, PRK05920, aromatic acid decarboxylase; Validated.	1.93212e-107
NZ_CP009284.1\|WP_042178205.1\|4567612_4568413_-\|protein-glutamate-O-methyltransferase-CheR	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	9.56381e-91
NZ_CP009284.1\|WP_042178176.1\|4553740_4554334_-\|zf-HC2-domain-containing-protein	gnl\|CDD\|379219	pfam13490, zf-HC2, Putative zinc-finger. This is a putative zinc-finger found in some anti-sigma factor proteins.	0.000601078
NZ_CP009284.1\|WP_042178208.1\|4568973_4569942_-\|heptaprenyl-diphosphate-synthase	gnl\|CDD\|131795	TIGR02748, Heptaprenyl_diphosphate_synthase_component_2, heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	1.62017e-141
NZ_CP009284.1\|WP_042178178.1\|4554339_4554927_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|236608	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional.	7.30833e-42
NZ_CP009284.1\|WP_042178185.1\|4557879_4558701_-\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	1.80767e-125
NZ_CP009284.1\|WP_042178190.1\|4559893_4560556_-\|phosphoribosylanthranilate-isomerase	gnl\|CDD\|238237	cd00405, PRAI, Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.	3.88596e-73
NZ_CP009284.1\|WP_042178207.1\|4568440_4568884_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	7.44135e-82
NZ_CP009284.1\|WP_042178188.1\|4558700_4559897_-\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NZ_CP009284.1\|WP_042178216.1\|4571400_4572273_-\|UbiA-family-prenyltransferase	gnl\|CDD\|237247	PRK12886, ubiA, prenyltransferase; Reviewed.	2.59378e-105
NZ_CP009284.1\|WP_042178192.1\|4560548_4561379_-\|indole-3-glycerol-phosphate-synthase-TrpC	gnl\|CDD\|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	4.86396e-128
NZ_CP009284.1\|WP_042178194.1\|4561368_4562409_-\|anthranilate-phosphoribosyltransferase	gnl\|CDD\|234682	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional.	0
NZ_CP009284.1\|WP_042178174.1\|4553000_4553588_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	2.05532e-50
NZ_CP009284.1\|WP_042178200.1\|4564867_4565971_-\|3-dehydroquinate-synthase	gnl\|CDD\|234565	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed.	6.30476e-178
NZ_CP009284.1\|WP_042178211.1\|4569938_4570799_-\|menaquinone-biosynthesis-protein	gnl\|CDD\|270352	cd13634, PBP2_Sco4506, The conserved hypothetical protein SCO4506 exhibits the type 2 periplasmic-binidng protein fold. This group includes the SCO4506 protein from Streptomyces coelicolor and related hypothetical proteins. SCO4506 is an ortholog of Ttha1568 (MqnD) from Thermus thermophilies HB8. MqnD is an enzyme within an alternative menaquinone biosynthetic pathway that catalyzes the conversion of cyclic de-hypoxanthine futalosine to 1,4-dihydroxy-6-naphthoate. Menaquinone (MK; vitamin K) is an essential lipid-soluble carrier that shuttles electrons between membrane-bound protein complexes in the electron transport chain. SCO4506 has significant structural homology with the members of type 2 periplasmic-binding fold protein superfamily. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.77742e-124
NZ_CP009284.1\|WP_042178202.1\|4565973_4567143_-\|chorismate-synthase	gnl\|CDD\|235438	PRK05382, PRK05382, chorismate synthase; Validated.	0
NZ_CP009284.1\|WP_042178183.1\|4556727_4557825_-\|histidinol-phosphate-transaminase	gnl\|CDD\|235106	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional.	0
NZ_CP009284.1\|WP_042178181.1\|4555584_4556679_-\|prephenate-dehydrogenase	gnl\|CDD\|235824	PRK06545, PRK06545, prephenate dehydrogenase; Validated.	4.2279e-124
NZ_CP009284.1\|WP_042178198.1\|4564502_4564874_-\|chorismate-mutase	gnl\|CDD\|377905	pfam07736, CM_1, Chorismate mutase type I. Chorismate mutase EC:5.4.99.5 catalyzes the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine.	3.46309e-65
NZ_CP009284.1\|WP_042178196.1\|4562612_4564166_-\|anthranilate-synthase-component-I	gnl\|CDD\|273142	TIGR00564, Anthranilate_synthase_component_1, anthranilate synthase component I, non-proteobacterial lineages. This enzyme resembles some other chorismate-binding enzymes, including para-aminobenzoate synthase (pabB) and isochorismate synthase. There is a fairly deep split between two sets, seen in the pattern of gaps as well as in amino acid sequence differences. Archaeal enzymes have been excluded from this model (and are now found in TIGR01820) as have a clade of enzymes which constitute a TrpE paralog which may have PabB activity (TIGR01824). This allows the B. subtilus paralog which has been shown to have PabB activity to score below trusted to this model. This model contains sequences from gram-positive bacteria, certain proteobacteria, cyanobacteria, plants, fungi and assorted other bacteria.A second family of TrpE enzymes is modelled by TIGR00565. The breaking of the TrpE family into these diverse models allows for the separation of the models for the related enzyme, PabB. [Amino acid biosynthesis, Aromatic amino acid family].	0

>NZ_CP009284.1|WP_042178194.1|4561368_4562409_-|anthranilate-phosphoribosyltransferase
MEASQLIQAGIAGLIEGHNLSRAQAREIMGTIMEGTATAAQIGALLTALRIKGETVEEITGFAEAMRGFGTPVLTERTRLLDTCGTGGSGIHKFNISTASAIISSAASVRVAKHGNRSASGRAGSADVLEALGVNIHLNAEQARRCLDSIGICFLFAQIYHPSMKYAAAPRRELGVRTVFNMLGPLTNPAGADRQLMGIYDRNKTEIVANVLKELGSKRAMIVSSLDGLDEISISAPTQVSELKNGIVTTYEITPEALGLSRHPLEAVLGGDAAENAAIITAVLQGALTPYRDIVLANAGACIYVAGLADSLSEGVAQARQMIDSGKALLKLEQLKAMTKELDYVS
>NZ_CP009284.1|WP_042178192.1|4560548_4561379_-|indole-3-glycerol-phosphate-synthase-TrpC
MYLDKIVATKIKEVEALSLMFSADAAEEVIAGLPATKGFREALVKRRNRDMGLIAEVKKASPSKGLIRADFDPEAIARGYEAGGADCLSVLTDQDYFQGSNAFLQQVREAVDLPLLRKDFIIDERQIYEARILGADAILLIAAILTAEQLASYTELAASLGMDVLIEVHDRSELELVISTGQIEHPNVLLGINNRNLRTFETRLDTTAELAALVPAGVPVISESGIAGPADINYLSTSGAIGVLVGEYLMRQDDVKEAVYGLLGPLTAGKDRALHG
>NZ_CP009284.1|WP_042178190.1|4559893_4560556_-|phosphoribosylanthranilate-isomerase
MAEAEVKICGLQDVEVLKSMKSLPIDYIGFVFAPSRRRVTAAQAALLTAELAGWETGKAPGAAGVFVNPGLAELQELLAAVPLDVIQLHGQEGPEFCREVKQAFPHIQVWKAISVGGSEAHTVVNSYAGTVDALLLDTYDPQSSGGSGRTFDWGQIPLFRQAAAKLGLPLFIAGGLHPDNVGELLTDYQPDGVDISSGVETNGVKDIVKMTSFVERVKQS
>NZ_CP009284.1|WP_042178188.1|4558700_4559897_-|tryptophan-synthase-subunit-beta
MIQVPDKYGRFGSFGGRFVPETLMNALIELEESYAKYSADPAFQEEIDYLLKQYSGRETPLYYAERLSKQLGEAKIYLKREDLNHTGAHKINNAIGQGILAKRMGKTKVIAETGAGQHGVATATVAALLGLECKVFMGEEDTRRQALNVFRMKLLGAEVIPVTSGSRTLKDAGNEALRYWVSNVEDTFYILGSAVGPHPYPMMVRNFQRIIGDETRRQILEAEGRLPDLLVAAVGGGSNAIGMFYPFMEDESVGMIGVEAAGKGVDTPFHAATMSKGSHGVFQGSMSYLLQDEYGQVIEAHSISAGLDYPGVGPEHSYLKDIERAKYVPVTDKEALDALKLLCVTEGIIPALESAHAIAHVVKIAPGLTKDDIVIICLSGRGDKDVESIMAYTEGSEL
>NZ_CP009284.1|WP_042178185.1|4557879_4558701_-|tryptophan-synthase-subunit-alpha
MTTETTNRMDLTFRKLKAEGTTALIPFLTVGDPDLTTTLDIIAELEAAGADILELGVPYSDPLADGPVIQRASSRALRGKVHLRTCMETALKARQNGSKLPFILFTYYNPVLQMGLDTFFAELDAHEISGLIIPDLPVEESEEMRIRSREAGVNLIPLVAPTSSERIERIVSGASGFVYCVSSLGVTGERSTFHSGVDEFIASVRRVTDLPVAVGFGISTSEQVERFSQICDGVVVGSAIVRKVEEVIPLLDNPATRSDGLLQIREFVAQLKS
>NZ_CP009284.1|WP_042178183.1|4556727_4557825_-|histidinol-phosphate-transaminase
MNPKPNIVNLPVYKPGKPIEEVKKELGLDDVIKLASNENPYGASPSAKAAIIADLDNLFLYPDGSAAELTAALAGHLGVQSENIIFGCGSDEIIALICRAFFLPGDETIMADQTFSVYKSNADIEGAVSIEVPLADGTHDLNGMLARITDKTKVIWICNPNNPTGTIVAHEALVTFLNAVPSGVMVVLDEAYFEYVTDPVYSDGIKLLEQYPNLVVLRTFSKIYGLAALRIGYGVASPQIINLINKVREPFNTSRLAQAGALAALADQEYVAECRRLNSEGIVQLQTEFRRLGLHAFPANGNFIMVDVRKPALEVFDALLRLGIIVRAGHRLYPTYIRVTVGSAEQNKAFITALEQTLSEQEVRA
>NZ_CP009284.1|WP_042178181.1|4555584_4556679_-|prephenate-dehydrogenase
MTTKIAIFGVGLIGGSLALCFKGKEGLTVVGHAHRPESAVKYVNRGVVDQATLSVEEAALDADYIFLCVPVGMLEGYLQQLSKLPLKPGCIITDVGSTKASIAACAVSLDMPGVHFIGGHPMAGSERSGVEAASSLLFENAYYVLTPPPGVPEEAYEALKSLLLHTRAQIVRLDPERHDEIVGAISHLPHIIAVALVNQVHAYDSEDSLYSTLAAGGFRDITRIASSDPIIWRDILLNNRSVMLRLLKDWNEEVSSFIQMLESSDGTGIEEAFHEANGFRSQLPERRKGMITPLFDLHIDVPDHPGIIGRIATELGDQGINLSNVQIIESREDVPGIMRLSFRQEHDMERAKMLLQHNDYTVYV
>NZ_CP009284.1|WP_042178178.1|4554339_4554927_-|sigma-70-family-RNA-polymerase-sigma-factor
MTDSQLIQLIKQGNTELYSELMRRYQRKILAFVYHMLKNSHMELIAEDLCSETFYKAFRSLHSFREVDASFSTWLYTIARNTVLSELRKNRAGNVSLEESGYTPVAPAEVAPEQAALRKERMNLVREAINNLPEKQRSALILREYDQMDYQEIAVILDQSVSSVKSLLFRARSSVKLQLESYFYEPEAEEQAERV
>NZ_CP009284.1|WP_042178176.1|4553740_4554334_-|zf-HC2-domain-containing-protein
MNCREAQDFIPLLWDAPPTDPKRIELERHIAGCSYCAAEWTLWQESNELMQDIRVEISAERAEAINQKVMERIYLESPWLMPGDGKSAGSTTVFRRRLSLWIACFLAVFLSSFLYFTMFKTSANTSSAQSGIIETGVAGLSLEWSSSYPATQTGGGIIEPLVVSMGPTHPQYWMVLSTLGVALSIFLLTRLNRYRRQ
>NZ_CP009284.1|WP_042178174.1|4553000_4553588_-|histidine-phosphatase-family-protein
MLIGLIRHGLTDWNAAGRIQGQSDIPLNEEGRKQAEMLGDRLLLEPYRWDFCITSGLSRAEETGRIIAAKLGIPLIEPDERIRERAYGQVEGLTALEREAKWGKEWNLQELGQESDEQLQLRGLAFMEDITARYPDSNILVISHGGFLAQLYVALYKDKYTERLGNLSLTIIEKSEQEWNALLYNCTRHILQNQR
>NZ_CP009284.1|WP_042178196.1|4562612_4564166_-|anthranilate-synthase-component-I
MTNPSVEEAVKLSREYNLIPVVKRLLADMETPIRLFQRFAGESHAFLLESVEGGIQWARYSFIGSDPFLTISGKKNVIHVKVGGEQKRLTGKPIEELKALLRSYRSPKLEGMPPFTGGAIGFFGYDLLQYYEKLSPHAVDDLGTDDIRFMFCDRIIVFDHVKQQILLIGNLHIKEGDTDSDIRAAYEALNSRLEDFAEELQKEGPKENVNRRSIPEDIELGQIHSNLTKEQYIANVEQAKEYIRAGDIFQVVLSQRLHIETEVSPLHVYRMLRTLNPSPYMYYLKMDEEIIVGTSPEALVKVDGSRVATRPIAGTRPRGANEAEDRALAQELLEDEKERAEHLMLVDLGRNDLGRVSKFGTVKCDSFMEIEKYSHVMHMVSNVTGTLDENKDFFDAFLSCLPAGTVSGAPKLRAMEIISELEREARGAYAGAIGYLGFSGNMDSCITIRTIIFRKGRAYVQAGAGIVWDSVPEKEYEETLNKAKAMLKAIRMAEAMFPAEIREPQVINQDYMYEYTP
>NZ_CP009284.1|WP_042178198.1|4564502_4564874_-|chorismate-mutase
MVNRGIRGATTVVNNEETEILRETVVLLREIVERNDVIAEDICSVWITVTGDLDATFPARAIREIEGWELVPLMCSVEIPVKGGLPKCIRLMVQVNTDKSQRDIRHIYLNEAKKLRPDLSQSK
>NZ_CP009284.1|WP_042178200.1|4564867_4565971_-|3-dehydroquinate-synthase
MRSITVDLGERSYPILIGSGLLGSIGARCLEAGYPVRSPLLVVSDSEVAPRYLDVVEASLRGQGYTVVSHVIPSGEASKSLAVYEEVITTAIQAGLDRSSAVLALGGGVVGDLAGYVAATYMRGIGFVQIPTTILAHDSSVGGKVAVNHPLAKNMIGAFYQPSMVLYDLDTLRTLPPREVASGLAEVVKHGLILDKEFAYWCREHASELLALDAGALGYALERGCAIKARVVGTDERENGLRAILNLGHTIGHAIEAVGGYGVFLHGEAIAVGMAGSALLAAKLGRDRGIYEDTVSMLSALSLPVGLPAEYSGDELMDAMMHDKKFKEGKMTFIVPDSIGAVSIVNDVQQSDVREVIAQLKKEGSPW
>NZ_CP009284.1|WP_042178202.1|4565973_4567143_-|chorismate-synthase
MSLRYLTAGETHGPQLTAIIEGLPSNLTLNFEELNFQLHRRQKGYGRGRRMQIEKDTAQIAGGVRHGYTTGAPVALIVENKDWTHWKNIMNIEPIPGSDEEKRRVNRPRPGHADLNGGLKYNHTDLRNVLERSSARETAARVAVGAVARQLLAEFGVKIAGQVIRIGEIEAPANNLPIDELIAKTEESSVRVVDKETELKMEAYIDKIKEEGDSIGGIVECVVEGLPIGLGSYVQYDRKLDAAIAGAVMSINAFKGVEIGIGFKAGVLRGSQVHDEIMYDPSRGYYRASNRLGGFEGGMTNGMPVVVRGVMKPIPTLYKPLQSVDIDTKEPFTAQVERSDACAVPAACVVLENVVAWELAKAFLDKFGGDSIEEIRANYNSYLAQLESY
>NZ_CP009284.1|WP_042178205.1|4567612_4568413_-|protein-glutamate-O-methyltransferase-CheR
MAEREEITAPDPDYSGFIQNIKQSTGIDLAQYKEAQMKRRLTTLRMKNGYHSFTDFFAAMMKDKALFYEFLDRMTINVSEFWRNPNRWEVLRDVILPELQQSGRRMKLWSAACSTGEEPYTLAMILSDKNLLAQTGILATDIDDGALAKAKQGLYLERSLKDVPKDVANRYFSPEGPVFKVSETLKKNIEFRKQNLLLDKFDDGFDLIICRNVMIYFTEDAKNKLYHKFSASLRPGGYLFVGSTEQIFTPAQFGFESTETFFYRKK
>NZ_CP009284.1|WP_042178207.1|4568440_4568884_-|nucleoside-diphosphate-kinase
MEKTYLMIKPDGVQRGLIGRIVARLEDKGFKLVAAKLITVTEEQAKKHYAEHEGKDFFAELVGFITSGPVFAMVWEGDDVIALSRLLIGKTKVGEALPGTIRGDFASHTPLNLIHGSDSPESAEREIANFFAPDELNDYNKDIAVWM
>NZ_CP009284.1|WP_042178208.1|4568973_4569942_-|heptaprenyl-diphosphate-synthase
MKRMQIFGMLSKDMDQIEKDLYRSVQGDDELLTETSLHLLKAGGKRLRPVFVLMGGKFGQYDLEKLKRVAIPLELIHSASLVHDDVIDDAELRRGELTVKAKWGNKIAMYTGDYIYAKALVMASELKNPRIHHILSKAMVEMSVGEMEQIRDFFNSGQSVRHYLRRIRRKTALLIAISCELGALAADSEPETARLLYNYGYNVGMAFQIRDDLLDLSGTEKQIGKPPGSDMRQGNITLPVIYSLEDSRLRSPLLEELALIRSGQAGVGRAVDLILSGDGISRAEELASRYIDKALAALEQLPSNKTRRNLRDIAYFVTGRAY
>NZ_CP009284.1|WP_042178211.1|4569938_4570799_-|menaquinone-biosynthesis-protein
MRDCRCTVIGKISYTNSWPVFHNFNPSALKHPAEMVSEVPAILNQGMSSGTIHVGALSSFAYAEASGRLLLLPDLSVSADGPVKSILLFSRVPAEQIGNGRIAVTNTSATSVNLLKILMEKAIGGSPEYVTADPDLDSMMDQADACLLIGDHAIKAAWQDQGYLVTDLGQVWKDWTGHSMTFAVWAVNREAARDMPEAVAEIAAALVESKQLGVNNLGPIIREACSRVGGTAEYWDGYFSNLCYDFGERQQEGLNLYFRYAYEMGLLPQAVTMELWDRNLLTRVNE
>NZ_CP009284.1|WP_042178214.1|4570795_4571404_-|UbiX-family-flavin-prenyltransferase
MSGLKPKHFVVGITGASGGIYGVRLTETLLSMGYTVHLVVSNAGWRVFKEELGFTASDREGFLNGQFSGYPGSLHYHPVADIGASIASGSFRTEGMIIMPCSMGTLSAVAHGSSDNLMTRAADVMLKEGRPLVLVPRETPLHAIHLENMLKLSRLGVKLIPAMPAFYFGPRSMDDLVDFMVGKVLDSLGIEHSLFRRWGEEE
>NZ_CP009284.1|WP_042178216.1|4571400_4572273_-|UbiA-family-prenyltransferase
MFKKVGVFLQMIKFEHTVFALPFAFMGALLGSVVMFGELPSWPKIGWIVVAMFGARSAAMGLNRLIDRISDAKNPRTSGRAIPAGLLKVGEVSVFIAISFFLLFWAAFKLNPLSAKLLPVAVFLLVFYSFTKRFTWTCHLILGLTIALAPLGGWVAVTGNVDWTAMIFYFTIVFWTAGFDIIYSCQDVEFDKQEGLYSIPVRFGVARALDIAKGLHILTGIGFVSLLFMTDLSWWYVAGMVIAYIILFYEHHIVSPSDLSRLQTAFFTMNGVLSIVVFSFTLIDLVVQFR

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Crispr_ID: NZ_CP009284_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009284_11

5092477-5093029

Orphan

Consensus_repeat	Method
GGGATTTTTCCCCTTAATGNGGCTCGTTTGCNG	CRT

10 spacers

The CRISPR arrays of NZ_CP009284_11

>merge|NZ_CP009284|11|5092477-5093029|CRT
GGGAGTTTTCCTCTTAATGGGGCTCGTTTGCGGGTGGAGGAGGCGATTTAATGGGATTTTTCCCCTTAGTGAGGCTCGTTTGCGGGTGGATTGGCCCGATTAAGGGGATTTTTCCCCTTAATCGGGCTCTTTTGCAGGTGGGTGGAGCGATTTAGTGGGATTTTTCCCTCTAATGGGGCTCGTCCGCTGGCGGTTGAGGCGATTTAACGGGATTTTTCCCCTTAATGAGGCTCGTTTGCGGATGGATGAGCTGATTTAGTGGGATTTTTCCCCTTAGTGAGGCTCGTTTGCGGGTGGATTGGCCCGATTAACGGGATTTTTCCCCTTAATGAGGCTCGTTTGCGGATGGATGAGCTGATTTAGTGGGATTTTTCCCCTTAATGGGGCTCGTTTGCAGGTGGGTGGAGCGGTTTAGTGGGATTTTTCCCTCTAATGGAGTTCGCATGCCGGTGATTGGGCCCGTTTAGTGGGATTTATCCCTCTAATGGGGCTCGTTGGCGGGTGGTTGAGGCGATTCTATGGGATTTTTCCCCTTGGTGGGGCTCGTTGGCGG

>NZ_CP009284|11|1|5092477-5093029|CRT
GGGAGTTTTCCTCTTAATGGGGCTCGTTTGCGG	GTGGAGGAGGCGATTTAAT
GGGATTTTTCCCCTTAGTGAGGCTCGTTTGCGG	GTGGATTGGCCCGATTAAG
GGGATTTTTCCCCTTAATCGGGCTCTTTTGCAG	GTGGGTGGAGCGATTTAGT
GGGATTTTTCCCTCTAATGGGGCTCGTCCGCTG	GCGGTTGAGGCGATTTAAC
GGGATTTTTCCCCTTAATGAGGCTCGTTTGCGG	ATGGATGAGCTGATTTAGT
GGGATTTTTCCCCTTAGTGAGGCTCGTTTGCGG	GTGGATTGGCCCGATTAAC
GGGATTTTTCCCCTTAATGAGGCTCGTTTGCGG	ATGGATGAGCTGATTTAGT
GGGATTTTTCCCCTTAATGGGGCTCGTTTGCAG	GTGGGTGGAGCGGTTTAGT
GGGATTTTTCCCTCTAATGGAGTTCGCATGCCG	GTGATTGGGCCCGTTTAGT
GGGATTTATCCCTCTAATGGGGCTCGTTGGCGG	GTGGTTGAGGCGATTCTAT
GGGATTTTTCCCCTTGGTGGGGCTCGTTGGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009284.1\|WP_042179078.1\|5075616_5076234_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP009284.1\|WP_042179097.1\|5093172_5094078_-\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
NZ_CP009284.1\|WP_042179115.1\|5105255_5106635_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|378963
NZ_CP009284.1\|WP_042179087.1\|5082507_5082978_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|240033
NZ_CP009284.1\|WP_156131264.1\|5095374_5096091_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP009284.1\|WP_042179095.1\|5090608_5092315_-\|alpha,alpha-phosphotrehalase	unknown	unknown	gnl\|CDD\|274115
NZ_CP009284.1\|WP_081947706.1\|5078740_5080840_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP009284.1\|WP_081947707.1\|5096154_5098206_-\|family-78-glycoside-hydrolase-catalytic-domain	unknown	unknown	gnl\|CDD\|379971
NZ_CP009284.1\|WP_042179091.1\|5087743_5088463_-\|trehalose-operon-repressor	unknown	unknown	gnl\|CDD\|274116
NZ_CP009284.1\|WP_042179085.1\|5081944_5082340_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NZ_CP009284.1\|WP_042179112.1\|5104260_5105259_-\|lipase	unknown	unknown	gnl\|CDD\|238881
NZ_CP009284.1\|WP_042179093.1\|5088592_5090569_-\|PTS-system-trehalose-specific-EIIBC-component	unknown	unknown	gnl\|CDD\|273916
NZ_CP009284.1\|WP_081947876.1\|5100660_5103984_-\|DUF1080-domain-containing-protein	unknown	unknown	gnl\|CDD\|227721
NZ_CP009284.1\|WP_042179099.1\|5094311_5095259_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381302
NZ_CP009284.1\|WP_042179080.1\|5076262_5078629_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|225272
NZ_CP009284.1\|WP_156131265.1\|5098321_5099248_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117
NZ_CP009284.1\|WP_052419162.1\|5083019_5087525_-\|DNRLRE-domain-containing-protein	unknown	unknown	gnl\|CDD\|377511
NZ_CP009284.1\|WP_042179110.1\|5100042_5100258_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_081947875.1\|5099310_5099751_-\|YbaN-family-protein	unknown	unknown	gnl\|CDD\|377291
NZ_CP009284.1\|WP_042179083.1\|5080866_5081943_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226657

Protein	Function_ID	Function_description	E-value
NZ_CP009284.1\|WP_042179078.1\|5075616_5076234_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.17778e-08
NZ_CP009284.1\|WP_042179097.1\|5093172_5094078_-\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	1.2728e-64
NZ_CP009284.1\|WP_042179115.1\|5105255_5106635_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|378963	pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This family of proteins contains FAD dependent oxidoreductases and related proteins.	4.58847e-140
NZ_CP009284.1\|WP_042179087.1\|5082507_5082978_-\|NUDIX-hydrolase	gnl\|CDD\|240033	cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.85087e-50
NZ_CP009284.1\|WP_156131264.1\|5095374_5096091_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.35751e-09
NZ_CP009284.1\|WP_042179095.1\|5090608_5092315_-\|alpha,alpha-phosphotrehalase	gnl\|CDD\|274115	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.	0
NZ_CP009284.1\|WP_081947706.1\|5078740_5080840_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.35706e-55
NZ_CP009284.1\|WP_081947707.1\|5096154_5098206_-\|family-78-glycoside-hydrolase-catalytic-domain	gnl\|CDD\|379971	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.	8.54173e-23
NZ_CP009284.1\|WP_042179091.1\|5087743_5088463_-\|trehalose-operon-repressor	gnl\|CDD\|274116	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli. [Regulatory functions, DNA interactions].	3.59853e-98
NZ_CP009284.1\|WP_042179085.1\|5081944_5082340_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	1.35708e-33
NZ_CP009284.1\|WP_042179093.1\|5088592_5090569_-\|PTS-system-trehalose-specific-EIIBC-component	gnl\|CDD\|273916	TIGR01992, phosphotransferase_system_trehalose_permease, PTS system, trehalose-specific IIBC component. This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.	0
NZ_CP009284.1\|WP_081947876.1\|5100660_5103984_-\|DUF1080-domain-containing-protein	gnl\|CDD\|227721	COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane].	6.82175e-20
NZ_CP009284.1\|WP_042179099.1\|5094311_5095259_-\|aldo/keto-reductase	gnl\|CDD\|381302	cd19076, AKR_AKR13A_13D, AKR13A and AKR13D families of aldo-keto reductase (AKR). Schizosaccharomyces pombe aldo-keto reductase YakC is a founding member of aldo-keto reductase family 13 member A1 (AKR13A1). It catalyzes the reversible reduction of ketones to the respective alcohols using NADP(+) as a hydride donor. Rauvolfia serpentina PR is a founding member of aldo-keto reductase family 13 member D1 (AKR13D1). It catalyzes the NADPH-dependent reduction of the aldehyde perakine to yield the alcohol raucaffrinoline in the biosynthetic pathway of ajmaline in Rauvolfia, a key step in indole alkaloid biosynthesis. This family also includes Arabidopsis thaliana aldo-keto reductases, ALKR1-6.	1.33073e-180
NZ_CP009284.1\|WP_042179080.1\|5076262_5078629_+\|MMPL-family-transporter	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	1.11542e-94
NZ_CP009284.1\|WP_156131265.1\|5098321_5099248_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.03722e-29
NZ_CP009284.1\|WP_052419162.1\|5083019_5087525_-\|DNRLRE-domain-containing-protein	gnl\|CDD\|377511	pfam05426, Alginate_lyase, Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold.	2.59278e-15
NZ_CP009284.1\|WP_042179112.1\|5104260_5105259_-\|lipase	gnl\|CDD\|238881	cd01844, SGNH_hydrolase_like_6, SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	4.82207e-46
NZ_CP009284.1\|WP_081947875.1\|5099310_5099751_-\|YbaN-family-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	1.38859e-41
NZ_CP009284.1\|WP_042179083.1\|5080866_5081943_-\|hypothetical-protein	gnl\|CDD\|226657	COG4194, COG4194, Predicted membrane protein [General function prediction only].	4.03351e-10

>NZ_CP009284.1|WP_042179095.1|5090608_5092315_-|alpha,alpha-phosphotrehalase
MTQTRYSEWWRRSTVYQVYPKSFKDTTGNGTGDIRGLTEKLDYLQELGIDIVWLQPVYVSPQYDNGYDVADYEAINPDFGTMEDFDELVQELHRRGMKLMTDIVVNHTSVEHEWFKQASSGKDNPYRDYYIWKDPGPDGGLPNNWQSKFGGPAWQFDEASGQYFLTLYDKTQADLNWENEKVRRAVNDMMLFWAKKGVDGFRMDVINVISKDQRFPDDDGSVPPGDGRKFYTDGPRVHEFIKAMYDEVFGPYEMITVGEMSSTTLEHCIRYSSPGEREFSMTFNFHHLKVDYPNGQKWELMPYDFEAMKRLFTQWQTGMQQGGGWNALFFNNHDQPRAISRFADDKAYRVESAKLLATTLHGMQGTPYVYQGEEIGMPNPIWKGIEEFRDIESLNMYRILQEQGKKPGTALSILQERSRDNSRTPMQWDDSPNAGFTSGTPWIKVDERYPDINVRKELADPGSILHHYRRLIALRKEHDVFVEGSFSRLDEAHPEVFAYARQAEGATLVVVSNFSRKEITFCFGVRQWAELGDSSEQELLIGNTAEAPALAQELPLSPYASYMWLIRK
>NZ_CP009284.1|WP_042179093.1|5088592_5090569_-|PTS-system-trehalose-specific-EIIBC-component
MAIDRKNVEDIVRAVGGKENIEVATHCVTRLRFSLYDESKVDKEALDRNDLVKGQFSTQGQFQIVIGPGTVDTVYEEMIKITGGSRSSKDEVKSAAARKQNPLQRAIKTLADIFIPILPAIVTAGLLLGINNILTGSGIFLYEKSLVEAYPQWSDIASIINTIASTAFTFLPALIGWSAVKRFGGSPLLGIVLGLILVHPDLLSAYGYADASLEGTVPTWNLFGWHIEKIGYQGQVLPVLVSAYILAVIEKFLNKRVHDSIKLLVVAPVALLITGFLAFTLIGPLTFAIGNAITDGLVYIFDHFALLGGLIYGGLYSALVITGMHHTFLAVDVQLIGSEGGTFLWPMLALSNIAQGAAALAMFFIVREQKAKGLAATSSVSAFLGVTEPAIFGVNIRYRYPFFFGLIGSGLAGMLLTLNDVRASSIGVGGIPGFLSIFPNQWGVFFIGMAIVLIVPFAATMLYGRIAVQRAKKNEQAEAAPTGAVSGASELSSRSSVQASQEPVNILELAAPISGKAVPLEQVPDPAFAEKQMGEGIAIEPSDGKVYAPFDATVAHVIKSKHALILEHASGVQVLIHVGINTVSLKGNGFTQHRNIGDKVQAGELLLEFDMDAIRAAGLPVITPIIIPAGQEMVERIEEKTGAATAKQTGILTIHLKG
>NZ_CP009284.1|WP_042179091.1|5087743_5088463_-|trehalose-operon-repressor
MRENIFLQIYNDYSSRIHSGQLLPGAKLPSESELAESYGTSRETVRKALNLLFREGYIHKIKGRGSFVLDMTRMDFPVTGLISFKEMSDTLGGPSRTLVEETVQEPAGFMLARQLQIPEDALIWKVTRAREIEGERIILDKDYFRADIVPFLSMDIAAGSIYEYLEGELGLKISYAKKLISVEPSTGEDHRLLDLKKYTHIVVVRNYVYLENTVLFQYTESRHRLDKFQFVDFARRVRR
>NZ_CP009284.1|WP_052419162.1|5083019_5087525_-|DNRLRE-domain-containing-protein
MKHYLKPFLSMLLCICLPVTSLFTGPGVNAASAAGTALSFPAAQDAFVSNFNGQGNALGTSLSAAKLIYGKSRHAYLKFDLSSIDTGRYNPNEMTMELSFRKSHAPNELVFTESESVLRETDHEWTVTNVTYNTRPYDIAGSPAVTRAVTSASEENLTVDLSPIFQNALNNGRKVVSIHLTTAKADDNTVSASELFSSRNTSGFPGPSLNVTLGDPVVNDGSDRTALNTLITQAEQLIETVYTRESWAIFMAALHQARALSINTAMQAEVDEALLTLQTATDNLAVMELPSQITGPDLGDYYSNSRTAAMILKLRNGDGQYVKADPVTEKLSLTADPAESSAFALYVLDYFATVDHEEPEAGATRTAYSIKSLDTGKYLTIQNYFTEKEFLDNTHRYFNIISGATSGVSTDRTFEITASAAVAGWNERFYVDQYTESGFYRIFSHLSTMRDDSNFSRFNVTMTANAMQSSGRAAENREYRFYFEQVTGKDPLEIRRKVSGDTANLLWKPVNGDTDPAGYKINGTVTDAVYSDGLMQVKLQGLSAGTHAYTVEYNGGGYSEKADINVRIFSHPGILLSMQDLEDMKAHVQAKQEPWYSDYRRMMDSVPYGVASSGYQTKVFSKVGRGGAPSDSGNIGYFEKGGNAAYFNALQWVITGDDQYAEMAAGLLNEWAKTLKVIDGRDRILGAGINAYKYASAAEIIRYYGGGYSGYSDEDFAALQAMMLNVVYPVLQDAAVPMLANGNWDAAAIVSMMAIGVLCDNPGIFERAMGFYQDIHTNGSIFAYVNDSGQTMETGRDQAHALLALGYMAEICLIAGNQNEDLASLYDNRLAKAFEYSAKYNLYSQELSGVEVPFTAMPNVFGDTGRGYYGTGFDMENNGLNRGELRPVFEQGLALYSKTEGVDMTWTARAAAAMRPQGMVHFDNLNFGTLTYYNGEPQTAVAGPYFQMRTRWEPLYQRNWSTVNGQKTAETLNSYYAVNADGELTTSLMKKDAPFFQLVAGDDGTYSILLPETNKYLSVKEEKSGDYNLIKADAAEIGDNERFILPSSGVGPFFLASPKYDNRIVYQEAAGAGSNAVLTLRLGNKTLSQITDIPDITTSERLLFMFNTEDIALPDGKPVPSQPENPATPGGVQAEEAANNPQISLNGISGTLSKNEHGGYSLLLSDGQIGTALGGSSELVINGDGIDNLTVQFSAAAMGTAKLTIKSGYGSVTLPNATLQMMKMKHGDTLLLRIRKGSYTVELLKDGKPAVYAEPGYPLIITLAVEVTEGHNINEYVVVAKETGRDVILPLAAAAGNSVTFAAAATGTYDVAYNRHVFHDVPSAHWAAQDIAFVAARGLFGGTGKELFDPQKPMTRAMFTRVLANLEGVDLGSYTGTEFTDAPAGQWYASAVAWAAQSGIVNGTGQGLFSPDAVITREQMAVMLYNYTAWKGYKPRAVMAPDFTDAGSVSAWAKEAVEAFAAAGILSGKPGDYADPQGEANRAEAAVIFALLIRAWGAEGI
>NZ_CP009284.1|WP_042179087.1|5082507_5082978_-|NUDIX-hydrolase
MTNKPNYISWIRQRVGPELIFLNFAGGIVCNEHDEVLLQRRGDSDAWGFPGGAMELGESAEETAIREIYEETGLVVKIEHLIGVYTKYSHHYSGGDKAQTITFFFQCKPVRGELTIDGNETLELKFFSKEELPRLFVQQHQDAYKDWLSGKSGVCR
>NZ_CP009284.1|WP_042179085.1|5081944_5082340_-|GntR-family-transcriptional-regulator
MFIELDLQSETPIYTQLVDQIVEGIACGALQPGEQLPSIRSLAEDLGINLHTVNKAYNLLKQEGLLQVHRKTGVIVQPGGMPGVTEAFEEKLRRQLRSLAAAAAVRGMAEEVFAQESRSVYQDIITNRGGE
>NZ_CP009284.1|WP_042179083.1|5080866_5081943_-|hypothetical-protein
MALEPVILITSLYVMIVLMLVLQGYIGLRNVLFGIMLPAEARQDPAVRTVRRNYALLTGGFAAVIGGICFLWLRHQPARGLLILMTAILLIIIASGFAVWISRMSAERLKAARGWEIAVQSKRAASLTPGQRHRPVLSSWWYSMNAAVMALCIFIAAAKWDTIPQVLILGNYIFNKSVWIVFVLNMVQALNITVFLCYNRLISRARTSLDPLDREGSLQKQLAHKRIHSILAWAASLLMIVFVGVVQAIGLYGWKGNLLFLSGMSLLAALFLALTGVMLYLRIKGIDQLKDVPSMEERHWKWLGSIYVNPEDPALLVPSIHGFGWTINMANPRGKIIVAATAAIPLIEFVLIVPVINK
>NZ_CP009284.1|WP_081947706.1|5078740_5080840_-|serine-hydrolase
MIKGRRIMLVLFILCLLLTGCDDNTTLEAMENIAGALHSSEVISYEITREAAGEKADLLTNTYNTNSVQYALIDHGRIVISGQSGRNDEQGQRPLTKDTLYGIGSTSKMFTTVAVMQLADQGKIELDTPVIEYVPGFKMKDERYKQITPRMLLNHSSGLMGSSFTDVFLFEDSDTYAHDILLKQLSGQTLKADPGTYSVYCNDGFTLAELMVEQISGLGFTSYIQRYITEPLHMGNTKTPLDYPDTAKMAGLYYSEYTGQLPNETVNVIGTGGIYSTAEDLVRFSTIFTGGKEKVLAGKSAAATAQDEYKTPLWPDDADNSIDYGLGWDSVNLYPFSEYGMKALTKGGDTTLYHSSLVVLPEQDMAAAVVSSGGSSTYDQLLANEILLQALKEKGAIAEFKPEKSYGAPVKADMPESVLQYSGIYGASNATMDINISEGGVMSVTTEQMPDTPAQIFEYSADGTFRSTDGNTMISFVSEDNGRTYLWNRQYILVPGLGQTALSLYNAEKLQPQNLPAETKEAWIKREGTYYLLNQKYTSLMYLVSPSIPLNVSERLPGYMLDKRITGPDTAVSELQIPGANGRDLYDLTFFTQDGVEYLKMGGFILVSEDVLKPFNFAKQSTVTIPSSGYARWYTISDKDGGKIIKVSMPANASFAVYDEKGKCLYFSVIGGKEEVVLPLGGAIVFAGDAGTEFGISAH
>NZ_CP009284.1|WP_042179080.1|5076262_5078629_+|MMPL-family-transporter
MSTFLYRLGKSAYSKPWYFLGTWIVILGVIGALLGVNGIQSSSEMKIEGTESQKVLDMLAEELPAAAGGQASVAFTAPEGERLDTPERAALLVKAINDVYSMEYIINPAELAAQAAAAAAQAASADPSAAAGQGAAPDASAADAQDDAAAQAASAAPYGPLIVDGAMVPGVMLSSDGSIALFQFQFTVQQTSLPSDVPDKVISAVTEVEQAGSGITAIPSDSLKSTPSIGSTEAIGVAVAAVVLFITLGSVVAAGLPLLTALLGVGISVGGAFALGSVIQMNDITPILAVMIGLAVGIDYSLFIVNRQRRLILDEKLSAREAASRAVGTAGSAVFFAGLTVIIALCGMLVIGMEFLSTMALVAAVSVLINVLLALTLLPALLGLVGEKICTAKAREKSKTSKGKQNHGFSHRWANATVKFRWPIIVLVVLVLGTAAIPASKMELGIPSGASANLDTPARQSYDIISKGFGEGFNGPLLLVAQPNNPSDKISMETLGKLTQELQMHDNVTLVSPMGVNETGDIAIISLIPKTGPTDTETRDLVQDLRDPSYSLATDNDIILGVTGFTAINIDMSSKLSDAFPIYIGIIVVLSLIILLLVFRSVIVPIKATVGFILSILATFGVTTAVYQWGWLHSLFGFDTGGPLLSFMPILVTGILYGLAMDYQVFLVSSMREAYVHGRRGNDSIVHGYDLASRVVLAAGIIMVSVFAGFIFAPDAMIKQIGFALAFGILIDAFIIRMTLVPAVMAVFGDKAWWLPKWLDRLLPNLDVEGDKLIAKLSAENDVHGHKK
>NZ_CP009284.1|WP_042179078.1|5075616_5076234_+|TetR/AcrR-family-transcriptional-regulator
MNPKLTLRDQKKEATAYALSVAAFELALVHGMDGFIVDDVVRQAGVSRRTFANYFSCKEEAVAEYFMRRATSEDENDLLAHLAPDATPLDALYSLLKLQFTSEFLRRLRQFASLANQYPSLEPYILSVFRRLQMAAQEVLERFTHGRYTDGYTHLLAGAVYGAFVPILDGRLNVLLPGESQEDRPGSVSFDQYLNSMFDYLRNGF
>NZ_CP009284.1|WP_042179097.1|5093172_5094078_-|dihydrodipicolinate-synthase-family-protein
MFQGLSAFPLTPLDETGVNEQEFIPLIERLVSAGVDSIGVLGSTGNYAYLTRAQRERVLQLAVQAAGDTPVMTSISALRTLDVLHLAEDAQRAGAGAVLLAPVSYQPLTDEEVFHLYEQVSSNLSVPLCVYDNPNTTHFRFSDELHGRIAQLPNVGAIKIPGVPAGAEAAGLRIGNLRELVPSRVALGISGDPTAAAGFKAGCEVWFSVLGGLLPKTCLQLTRLAQAGREEEAEQISLLLEPLWSVFRQYGSLRVASAIAQQLGFISSPALLLPLLPLSSAVNDQLAAALREITVLEGLQC
>NZ_CP009284.1|WP_042179099.1|5094311_5095259_-|aldo/keto-reductase
MKTQRLGNSELVISSMGLGMMGMSPGIYGSVDDEESVKTVHRALELGVTLLDTADTYGNGHNEELLGKALKGRREQAVVATKFTFGPNWEFIGGHPDYVKKAIDESLRRLGLDYIDLYYQHRVDPNVPIEETVGAMADLVKAGKVRYLGLSEADAANIRRAHAVHPISALQTEYSLWSRDVEDEIIPVVNELGITFVAYSPLSRGFITGELRKYEDFKADDLRRIMPRFQGDNFQKNVDIVDKLRELAGEKNCSVAQLAIAWTIAKGTVPIPGTKRRKYLEENAGAIEIQLTADDLARIDAVSPSAFGGRYPGAE
>NZ_CP009284.1|WP_156131264.1|5095374_5096091_+|TetR-family-transcriptional-regulator
MKFQVIIQHEGVLILNNVISNSDKIKETRSRLITKLLPYLRKNGLQAVRMDEIARVTEVSRATLYKYFSTKEEIIGYIVDGFVVYMNEQLASSPLESEESFGIRFQQMFEQSVSLIIYFTDIFLKDLETSYPDWYSRFTEGMQQREEQILAYYKEGIRRGLFHDLNGKILIMQDELLRGMLNVKYLMTNQLTVEQVLADYYQLKKIQLFKPDKLSAIDDALMRPRIEHLTHKVTGSLF
>NZ_CP009284.1|WP_081947707.1|5096154_5098206_-|family-78-glycoside-hydrolase-catalytic-domain
METHPIEQAAAWIWYPGDFEIRLHEKMSVARRARGVTYPAFWRLDRHYSNIKFRYTYDLPEEEHITVLAEGKLSLYLDGKDNYRSNKSSITLPAGRHQLEVSVYNDQETPALYINGNNLRTGPSWEVTSYQNDWLSAGSWIFDQPDSPPSEYKLDVSPLDAVSMELKNGYPLADFGRETFGYLRFHNLTGNGTVRLYYGESEAEALSPEECVNLDAFNVGGGTAAGQSEDGTYTVEEARALRYVWIHVDGDVQWERVSLLYEYVPVTYRSSFRSSDSRLDEIYNMSLYTLHLNTREFFLDGIKRDRWVWSGDAYQAFLMNYYSFFDLDVTRRTLIALRGKDPVTMHINTIQDYSFYWFISLYDYYLYTGDFGFIRQYYDRAVSLMDFCLQQRNPEGFVQGREQDWVFVDWADFSNTGAVSTEQILFVRALEAMSIFALLMEDEEASARYGTVAEEVKVKTLSVFWDDSRGGLLHHRVDGETQPVLTKHANMFAMTYGYLSPEQKARVVQNVMLNPEVPSIRTPYMRFHELAVLCESGGHEVVYKELQSYWGGMMDLGATSFWEEYDPSLATDDHYGMYGMPFGKSLCHAWGAGPVYLLGKYFLGVQPLTPGYATYTVEPQLGGLTWMEGTVPAGPGDIEVYMDQEKIRVRGTHGQGVLKYTRGGQTLEAAIPGDGSWVEVGLI
>NZ_CP009284.1|WP_156131265.1|5098321_5099248_+|helix-turn-helix-domain-containing-protein
MRKAATAPVHQSSVSEYFKDGFPLFLNRWPEGFELRAHSHDYIEIVYVTSGEGYHYIGDRVEKTGKGCLYLLPVGTSHILRPASTSARNPLIVYNLCVLPEFAAELGAWMGNYGSGGEPLFIFTGEPGSYIAVEDRGLELGEAFESMYREYTGQPWGFEASLFAGLLKLSVRIARLVKQQTGELNETGHSPQVNSGEWSELLQYISLHIAEPLTLSQLAAEAGISNRHFIRLFRQQAGMSFSDYLQHKRIELACHLLIETGRKMPDIAKSIGYQNTAHFREIFRKLMGVSPSEYRKAPGISGPTSHTE
>NZ_CP009284.1|WP_081947875.1|5099310_5099751_-|YbaN-family-protein
MHGIANLLERSTLYRTEAERLKYIYIFVGFVCVGLGAAGVFLPVLPTTPLLLLAAFCFSRGSERFHGWFLSTGLYKKHLKSFAESRSMTLKDKVLIQGFASTMLLIAFIVTDSTAFRILLITVAIGKYYYFARHITTIRVDRLKSH
>NZ_CP009284.1|WP_042179110.1|5100042_5100258_-|hypothetical-protein
MNLNEYGNLRGMRNGLFRLNGSYQLHFFENELETLHLDLDSFKVGKFKISKLIIGVKNPEEISENISGRVK
>NZ_CP009284.1|WP_081947876.1|5100660_5103984_-|DUF1080-domain-containing-protein
MRIKKAMVLLLAFAVMLTGFIPQTAGAAEADPSYSLTATDSAGAAESPASPQNAQGPAVIQNYPKPDIYEASAVFSLKADTNEVPVIKYLPDYDYAQFSFSGTVTLEVTANQPITNYSISPLAKNIQGTVNGNKLTFTLSASTYVIVDINQAPNEKADEPDPEKRRKRLVIAADPLETDIPASSGPGIYNVTAAPYNADSSGETITSNAIQQAIDAANQAGGGIVYIPAGVYKSSNLTLKSNVTFYLAGGAVIVGTGRGEDYRNDFRKDSISDGTYFIRTAVNSENITMRGRGTIDGKGIEMRKRKMTNPPPTHKKGEGFINNLVVPIATSHFTFDGLTLRDGGFWAFLVVRSDNVRITNYKGFQDLHVLEDDAIDINESQNVLVKHAIAISDDDTFSTKTWPQKGMSKDWPGAIESLSNVVFDDCLAWTRCAAFKLGMGICTPQVGVTIRNSYVYQSARALLVDHAYTENPLPVEGWAKDVTFENIDIERVGINQFGNYWLRISTSTAGDVSNVLLKNINVRETGGESPIQGNVVRGGMVNGVTFTDVYVKGKLATSLSDLKAAVKNENVSGVVIANSSPSLFSDHFEDGNHTGWTAAAGTWSVKEEAGNQVLATGSQTTTYLITANDSAPWTDYTYEAKLYLPFINGEENAGLLFRVKDNNNFYMYRINAKSKKLELFKSVDGTLSSVLNSVDFTPAKQWYTVKVVVKGNAVKGFVDGQLKTEWTNSVNELTSGGIGFRTTSAKILFDDAVVSAVNEAPTDIVLSQDSIAENTTAGSMVGTLSAADPDAGETFSYALVPGAGDTDNGSFSIAVLGNTLFLRTSPDYETKNSYSIRVRATDSGGLYVEKSFTIDVIDKDDTPVDADRDAVLFSEDFEGGVTALWAVSSGTWSAATAEETKPLVQKANTTGLITAGDDAWEDYAYEAKVRIPITNANAGLVFRLKDSLNYYMYRVNGANQRLELFKAVDGVLTNVSSTPFAAVAKQWYTLKVIVQGNTIKGYADGERKVEWTNPVTELTAGKIGFRTTSVDAAFDDVLTAGIKTASGPLTVTLNVYATANAEGKSLNVNPSAAVAGQTAILMAEGCNQNSEPTVIGEEGYYPAVWRR
>NZ_CP009284.1|WP_042179112.1|5104260_5105259_-|lipase
MRLLSLTDAWFHGAVSLEHLEGGIKPWRIPYPDYGLYPPGGIEGKAEICAGVRLRLRTDSAEVAVSFAPLADDAAMDCVAGGALLWTLHLPAGATEAHFGGLPGGTKDLEIWLPQNTGMTVTALRISAGAFGVPLPDDRPRWVTYGSSITQCVAASSPSRTWPAIAAEACGFNLTSLGFSGNCHMEPMIGRMIRDLPADFISICAGVNIYGAATLSPRMFKPLLIGLLETIRDGHKETPLLVITPIYGTIRETELNPLGFTLPMMREAIRETVKLLRERGDRYLYCRDGLDWLGPQEQAFLTDGLHPGAEGYELMGRRFPGLLEGVYRTADK
>NZ_CP009284.1|WP_042179115.1|5105255_5106635_-|FAD-dependent-oxidoreductase
MDYRHITLPSAIIPVTREVDVLVIGGGASGIAAAIAAARGGATTMLVEQRGFLGGMGTVALVPAFCPFTDKQKPIVRGLGLQLMEQMKEACDPAFRKEYQDMLDWVPIDPEVLKRVYDDAVLESGVTPLYHTFVYDVVLSPDRKTVEGVIVVNKTGRSFISCRYIIDCTGDGDIAALAGVPFQKGGEEGELQPGSMCYLLANVDRPKFSRFLEESGDTGQLHTTVELAIAEGALPEGRKSISGLAWVSDYLVGVNFGHVFGIDGTLAEDLTRGAIEGRRTAERQLQFFRRYVPGFENAHMVASGEQLGIRETRRIEGDYILTVDDFITARSFPDDIARNAYYIDIHLANSKSDMTFNHLPPGVSHGVPYRIMLPVGIDNLWVAGRSVSSDRAVQGSLRVMPNCFSMGQAAGTAAVLALQGSTGSRGISVAELQRRLLEQDVWLGEDRVPAEKEKEGNTP

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Crispr_ID: NZ_CP009284_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009284_12

5423488-5423580

Orphan

Consensus_repeat	Method
GCTTCGTACAAAACTCACTTCGGAAGCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009284_12

>merge|NZ_CP009284|12|5423488-5423580|CRISPRCasFinder
GCTTCGTACAAAACTCACTTCGGAAGCATATGCTTAGTTTTGTGAGCTTCAGCCCACTTTAATTGCTTCGTACAAAACTTACTTCGGAAGCAT

>NZ_CP009284|12|11|5423488-5423580|CRISPRCasFinder
GCTTCGTACAAAACTCACTTCGGAAGCAT	ATGCTTAGTTTTGTGAGCTTCAGCCCACTTTAATT
GCTTCGTACAAAACTTACTTCGGAAGCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009284.1\|WP_042179635.1\|5420918_5422223_+\|uracil-permease	unknown	unknown	gnl\|CDD\|236744
NZ_CP009284.1\|WP_042179641.1\|5423592_5425992_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
NZ_CP009284.1\|WP_042179655.1\|5434153_5434459_-\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235518
NZ_CP009284.1\|WP_042179646.1\|5427997_5429248_-\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|237276
NZ_CP009284.1\|WP_042179647.1\|5429974_5431528_+\|stage-V-sporulation-protein-B	unknown	unknown	gnl\|CDD\|240529
NZ_CP009284.1\|WP_042179630.1\|5417858_5418302_-\|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl\|CDD\|235383
NZ_CP009284.1\|WP_042179651.1\|5432743_5433136_+\|TIGR04086-family-membrane-protein	unknown	unknown	gnl\|CDD\|274969
NZ_CP009284.1\|WP_042179617.1\|5412486_5414265_-\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NZ_CP009284.1\|WP_081947725.1\|5429466_5429718_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379375
NZ_CP009284.1\|WP_042179624.1\|5416425_5416875_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_156131178.1\|5422314_5422698_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042179627.1\|5416909_5417416_-\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153228
NZ_CP009284.1\|WP_042179638.1\|5422922_5423441_-\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NZ_CP009284.1\|WP_042179653.1\|5433247_5434069_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239481
NZ_CP009284.1\|WP_042179643.1\|5426021_5426984_-\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|223131
NZ_CP009284.1\|WP_042179649.1\|5431532_5432318_-\|DUF421-domain-containing-protein	unknown	unknown	gnl\|CDD\|225205
NZ_CP009284.1\|WP_042179633.1\|5418324_5420505_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_CP009284.1\|WP_081947724.1\|5427111_5428008_-\|protein-translocase-subunit-SecF	unknown	unknown	gnl\|CDD\|237275
NZ_CP009284.1\|WP_156131177.1\|5417526_5417682_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042179620.1\|5414341_5415595_-\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|273080

Protein	Function_ID	Function_description	E-value
NZ_CP009284.1\|WP_042179635.1\|5420918_5422223_+\|uracil-permease	gnl\|CDD\|236744	PRK10720, PRK10720, uracil transporter; Provisional.	0
NZ_CP009284.1\|WP_042179641.1\|5423592_5425992_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP009284.1\|WP_042179643.1\|5426021_5426984_-\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	5.82638e-38
NZ_CP009284.1\|WP_042179647.1\|5429974_5431528_+\|stage-V-sporulation-protein-B	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.75962e-124
NZ_CP009284.1\|WP_042179630.1\|5417858_5418302_-\|D-tyrosyl-tRNA(Tyr)-deacylase	gnl\|CDD\|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	4.92365e-97
NZ_CP009284.1\|WP_042179651.1\|5432743_5433136_+\|TIGR04086-family-membrane-protein	gnl\|CDD\|274969	TIGR04086, hypothetical_protein, putative membrane protein, TIGR04086 family. Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. The function is unknown.	8.08787e-19
NZ_CP009284.1\|WP_042179617.1\|5412486_5414265_-\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NZ_CP009284.1\|WP_081947725.1\|5429466_5429718_-\|hypothetical-protein	gnl\|CDD\|379375	pfam13797, Post_transc_reg, Post-transcriptional regulator. This family includes post-transcriptional regulators.	1.78938e-17
NZ_CP009284.1\|WP_042179627.1\|5416909_5417416_-\|type-1-glutamine-amidotransferase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	1.25475e-78
NZ_CP009284.1\|WP_042179638.1\|5422922_5423441_-\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	2.40511e-91
NZ_CP009284.1\|WP_042179653.1\|5433247_5434069_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239481	cd03386, PAP2_Aur1_like, PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of inositol phosphate to ceramide, an essential step in yeast sphingolipid synthesis, and is the target of several antifungal compounds such as aureobasidin.	9.13294e-16
NZ_CP009284.1\|WP_042179646.1\|5427997_5429248_-\|protein-translocase-subunit-SecD	gnl\|CDD\|237276	PRK13024, PRK13024, bifunctional preprotein translocase subunit SecD/SecF; Reviewed.	9.14842e-135
NZ_CP009284.1\|WP_042179649.1\|5431532_5432318_-\|DUF421-domain-containing-protein	gnl\|CDD\|225205	COG2323, COG2323, Predicted membrane protein [Function unknown].	1.16019e-61
NZ_CP009284.1\|WP_042179633.1\|5418324_5420505_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NZ_CP009284.1\|WP_081947724.1\|5427111_5428008_-\|protein-translocase-subunit-SecF	gnl\|CDD\|237275	PRK13022, secF, protein translocase subunit SecF.	2.77597e-104
NZ_CP009284.1\|WP_042179655.1\|5434153_5434459_-\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235518	PRK05585, yajC, preprotein translocase subunit YajC; Validated.	3.10789e-32
NZ_CP009284.1\|WP_042179620.1\|5414341_5415595_-\|histidine--tRNA-ligase	gnl\|CDD\|273080	TIGR00442, hisS, histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. [Protein synthesis, tRNA aminoacylation].	0

>NZ_CP009284.1|WP_042179638.1|5422922_5423441_-|adenine-phosphoribosyltransferase
MDFKNNIRVIEDFPQPGISFKDITTLLKDGEAYRSAIDELKALVSHLQIDVIAGPEARGFVVGAPLAYALGVGFVPIRKSGKLPYETIEVGYDLEYGKDTLAVHTDAIKPGQNVLIADDLLATGGTIATSVSLVEQLGGKVVGAAFLIELVQLAGRNKLSDIEVVSLLTYED
>NZ_CP009284.1|WP_156131178.1|5422314_5422698_+|hypothetical-protein
MLHFSANMHPRSSSKGISPFIPRQTAFSQLQQRDFSLYSMPNCLLAAPAKGFFPLFQAKQPSRSSSKGIFPFISRQTAFSQLQQRDFSLYFMPNCLLAAPAKGFFPLFHAKLPTRSSSKGIFPFILD
>NZ_CP009284.1|WP_042179635.1|5420918_5422223_+|uracil-permease
MQREIQVNEKLPFGPGFLLSLQHLFAMFGSTVLVPNLFGVDPGMILLMNGIGTLLYILICRGKIPAYLGSSFAFISPVLSVLGKYEGDHQHGYSLALGAFIVTGVIFILVALIVRYAGTSWIDVVFPPAAMGAIVATIGLELVPVAARMAGLIAPEGVTDWTPDGKAITLSLVTLGVTVIGSVMFRGFPKIIHILIGIVTGYVLAYIMGQVNTGAIADASFLSHPTITTPSFDLQVILTIIPVSLVVIVEHIGHLLVTSNIVGKDLTKDPGLDRSLFSNGISTVLSGFVGSTPNTTYGENIGVMALTKVYSVFVIGGAAVIAILLSFSGTFSSVIANIPLPVMGGVSLLLFGVIAASGLRIFVEQKVDFSKASNMILATLVLVVGISGISLNIAGVQLKGMALATIVGIVLSLFFKLIEVLGLSNEQESEKSAH
>NZ_CP009284.1|WP_042179633.1|5418324_5420505_-|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MGIEQLVEKAGAYIKEKDLLRIREAYEFADQAHHGQVRKSGEPYILHPLAVADIVVNMQMDVISIIAALLHDVVEDTTVSLEQIREKFGDTCAMLVDGLTKLERIRFRSKEEQQNENYRKMFIAMAQDIRVIVIKLADRLHNMRTLKYQSEDSQRRISYETLEIFCPIADRLGISAIKWEMEDIALRYLNPQQYYRIANLMHKKRAEREQFIDSVIGRIRAKLDEMGIEGDLSGRPKHIYSVYNKMSTKNKQFNEIYDLLAIRIIVDNIKDCYATLGIIHTLWKPMPGRFKDYIAMPKANMYQSLHTTVVGPGGEPTEVQIRTWEMHRTAEFGIAAHWAYKEGSSNTGNPENRMPFFREILELQHEAKDAEEFVESLKMDFFSDLVFVFTPKGEVVELPAGSVPLDFAFRIHTEVGNRTIGSKVNGRIVPLDHKLKTGDIVEILTSKNSYGPSRDWLKIAQSSHARSKIKQWFKKEKREENVEKGREAVERELKRLNMEVSDFLTEDKLSDVAKKFAFGDVEDMLSAVGFGGITASQIANKLTEKLRREQEEAANHLELSTEMKEIKSSGGNRNQPTNGVRVKGIDNLLVRFARCCNPVPGDDIVGYVTRGRGVSVHREDCPNIPTDGDGEESARVIEVEWEGSMEANYSVDIEITGHDRNGLLNEVLQAVSESKTNISAVTGRSDKNKMAMIHMTILIRNTDHLQSVVDRVKRVKDVYTVNRIMQ
>NZ_CP009284.1|WP_042179630.1|5417858_5418302_-|D-tyrosyl-tRNA(Tyr)-deacylase
MRAVVQRCKEAKVTVDGTVTGAINEGLMLLIGVTHGDTEKDAEYLAGKIAGLRIFEDEAGKMNFSVTDTGGAILSVSQFTLYGDCRKGRRPNFMAAAAPDEAGRLYDYFNQELRGGGLQVETGVFGAMMDVSFTNWGPVTLILDSRD
>NZ_CP009284.1|WP_156131177.1|5417526_5417682_-|hypothetical-protein
MRYSPKSWAWSRIQACTAGSSAEAAAAAKEAGQQDDPVMLKGRSRGLLPRT
>NZ_CP009284.1|WP_042179627.1|5416909_5417416_-|type-1-glutamine-amidotransferase
MSKVAFLLASGFEDSEMQVPYDEVIKAGHQADIIGLKKNETLLGKKGKVSYAADKAISEVKAGDYHAIVIPGGSSPENLRLNEDVLAFVKEADASGTPIASICHGPQILISADLLQGRTITSYPPLKDDIVNAGAEFKDEEVVVDGNYITSRTPEDELAFVRELLRVL
>NZ_CP009284.1|WP_042179624.1|5416425_5416875_-|hypothetical-protein
MTRRIQAYFRTESEAEGAKTALIPYSVEALEISPLTDPLDSGRDRRPNLLLPLVPYNNSAITGGTMGVAGTAGALSGAAVVPAVSDIDDEGLKRSDVDRDNDIVQDTNINDDVDLSEVHIVMSLKTTEEHYNEVVETLRGKHAYVEVFD
>NZ_CP009284.1|WP_042179620.1|5414341_5415595_-|histidine--tRNA-ligase
MAKERFEKPTGTQDVLPGAVEKWQYVEGKARDLCRRFNYREIRTPMFEHTGLFERGVGETTDIVEGEMYTFKDKGDRDLALRPEGTAGVVRAYVQNKLYGEPDVSKLYYIGPMFRYERPQAGRYRQFHQFGIEAFGAVDPAIDAEVISLGYQFYKDLGLKDVRVELNSVGNAPSRAAYREKLLDFLRPMRDRLCSDCQRRMERNPLRVLDCKVDQDKFGGAPSILDSLDEECTTHFEKVKMHLDTMGVEYSINPRLVRGLDYYTHTAFEYKAAGIGSIDTVGGGGRYNGLVEEIGGPDQPGIGFGIGLERILLILESQGVELETMKPLDVYFVALGEAADQEITKQLFQLRSQGFSAERDYLGRKMKAQMKSADRMSARYTAILGEDELNSGVIALKSMETGEQKTVKLEELAQALV
>NZ_CP009284.1|WP_042179617.1|5412486_5414265_-|aspartate--tRNA-ligase
MSRSHHCGQLTPEQIGQTVTLNGWVQTRRDLGGVLFIDLRDRSGIVQIVFNPDYSGEALQIADKVRSEYVLSVKGTVVKRDEETVNRNLPTGEIEVQITEIEVLNAAKTPPFFIEDGVEVDESLRMKYRYLDLRRPEMHKTLLLRSKAAKIFRDFLDGEGFIDVETPILTKSSPEGARDYLVPSRVHEGEFFALPQSPQIYKQLLMVGGIERYYQIARCFRDEDLRADRQPEFTQVDIETSFVPQDELLGMMETLMQRLLKETIGVDVAVPFQRLTYAEAIGKYGSDKPDLRFGLELVEMNDIVAGSGVKVFASVIEKGGEVKVLNAKGCGTWTRKEIDDLGPYAARYGAKGLAWIQVKDGEFKGPIVKFFTEEEIAAVKERTGAEEGDLLLFSADTKKVVADVLGALRLKIGRQLGLIDDSVFKFAWVTEFPLLGYDEEQKRYVAEHHPFTRPMDEDLHLFDTDPGAIRAQAYDIVLNGYEVGGGSQRIYKRDVQEKMFEALGFSPEVAYEKFGYLMDAFEYGTPPHGGIAFGFDRLVMLLAGRTNLRETIAFPKTASATDLLMDAPSPVDAVQLEQLHIKLAPKPEKVKN
>NZ_CP009284.1|WP_042179641.1|5423592_5425992_-|single-stranded-DNA-specific-exonuclease-RecJ
MLHSKTRWHSPAADPDQVRDLARSLSISPLLSSLLVTRGFTAPDEALLFMDGGTDDSYDPFLLKGMAQAVPRIRKALEEEEHILVYGDYDADGVSSTSLMIYLLRHMGASFDIYIPHRSNEGYGLHNHALDWAVQQGVTLVITVDTGISAVHQIAYASQLGIDVIVTDHHEPPGLLPEAFALINPKQHDCSYPFKGLAGVGVAYKLAQALLDGRVPEEWSEIVAIGTIADLMPLLDENRSLVRKGLASMRNSPFPGVRALLEVSGVTMSTVGAVNIAFGVAPRINASGRLDHAGRAVALLTTTDSVEAGQLAGELDLLNKERQMVVERIVAEASDKLAGQIGDGQPPDIIVLANQGWNVGVVGIVASKLLERYYRPVIILDIHPETGMCKGSARSIPGLDIYEALTSCSSLMDHYGGHPAAAGMSLHRDNLDAFAAALNEYAAGVLTPEDLIPVTAADGETEVADLTLQAALELERLAPFGMSNPLPKFIVRGAAVKETRTMGQDGKHLKLVLQQGRHTIEAVAFGKGALAELLPGGTRVDVLAELSVNEWNGSRKPQLMLQDLAVPEAQLLDLRGSTDAVKRAVRLKELLQPYSGSTPFTVAAVFQNSRQSPLSELNGMSLWTYDEDGGITALPHGQAEHNGSVSLLCLLDMPETPEQLDALLAAFPQADNIALLHALRDGRDRLQVPTRDHFKILYKLLASIAASAVPEREVLLRLSRQSSLGVRMLGRMLDVFEELDFIERTGGMITFVSAPAAKSLSASHHFVRLGQTAEMEQYFMDGSAHELESWMQARRQGVS
>NZ_CP009284.1|WP_042179643.1|5426021_5426984_-|cation-diffusion-facilitator-family-transporter
MNDKQSPQSETVAWNGIVSDTVLALAKGSVGYFTGSKALLGDALYSGADAAARLAEALPWRPEKGKKQRAARRAAAGTNGKEPIITILFSVLILMAGLQMTFSAIRDLTRGHLSTVPPAALVTVLISILVKEGIFQYQYRYFKKIGDGSHAAYADSHRFSLYSSVAALMGITLSMIGGYISWSPLLYMDPVAALLTSFLILRKGYTMIAASIYGKTSQELPSAEAANFIETVGRVHGVIRVEHLQAVEQGRYVNLQVKISVNPRITVMEAQDISECARKLLQHRFVHVGEVHMDVVPYDPGYPYKTNHQLADNDIPTLLQ
>NZ_CP009284.1|WP_081947724.1|5427111_5428008_-|protein-translocase-subunit-SecF
MRFNKDMDYVHWSKYFFSFSIVLTVLGVVFLGFMGLNYSVDFKAGSNVDVSLTKSITQAELQPALDSLNFEHAPSITFGENRVNIRYDEVLENEQSEALKAEISKLDAQASFEINTVDTEMARELARNAIYSVLLSSLGIIIYVSIRFEWRFALASIVALLHDAFMVVAVFSIFRLEVDITFIVAVLTIIGYSINDTIVIFDRIRENLRFGKQKTYEDLKVLVNKSISQTLMRSLYTAFTVFIAAFFLLVMGGESIKMFSLAMVIGLLFGAYSSIFIASPLWLLLKKRQKPAVKNNPA
>NZ_CP009284.1|WP_042179646.1|5427997_5429248_-|protein-translocase-subunit-SecD
MKRLLSFIITVLVLTGVMAFTTPGLLDKVRLGLDLKGGFEILYQASPMDNGGELTRASLQQTAKSLEKRANALGTSEPEVTTEGTDRIRLKIAGVTDEAEVREKMKEPAVLTFRSAAEGDAAGVYSKIELVGSDFVEGAAEVQRSNLNQPEISISIKDKAKFAEITKRLLGKELAIYLDENLLSAPFVRAELTDGKASISGNYTLDEARELADTINLGALPLKLTEKYSQSVGATLGKQSLDQTVRAGLVGSLIILIFMIGMYRLPGILASFALILHTWLLILVFVVADFTLTLPGIAAFILGIGMAVDANIITNERIREEIRSGKGIMSSVKAGNKTSFRTVMDANVTTIIVAAVMFAFGTGAVKGFALILIVEIVLSILTNLYFTHWLLTVLVKAGALKKPKQFGVKESDISAL
>NZ_CP009284.1|WP_081947725.1|5429466_5429718_-|hypothetical-protein
MESEPWKYDELSDVIEAMCASKAEEFRLLGYEYVTGKDIWECISRKHEKEGHPPLYKLVNDIYSLKATTYMNYLMLAAYRGIT
>NZ_CP009284.1|WP_042179647.1|5429974_5431528_+|stage-V-sporulation-protein-B
MILLAAGIINRMLGFIPRIALPRIIGAEGVGLYQLGYPFFIVLITVITGGLPLAIAKMVAEAEGENRPEQSRRILRTGLTLSFSLGLLFTLVALLSASWVSNVILTDSRVYYTFVSMTPMISIVAVSSVYRGYFQGRQNMIPSALSSVLESVIRIFFMLWFSYLLLPKGMAFAAAGAMLGVTVGEIFGMLALLVQYFFIAKADRLESNPDTAAPDTGLQQDKDRQGGTLLRRMLGIAVPVTAGRLVGSFSYLLESIITARSLALAGLATAAATAQYGSLQGMVIPLLLLPGVLSSSLAVSLVPSLSEAAARRDLPSIHKRMHQALRLAMVSGAPFAAIMYVLAVPLCTLMYGNADTAPMLRLMAPFALFLYVQAPLQAALQAMDRPGRALINTLAGAVIKILLILMLASRPEYGIYGAIIAIIVNSVLVTLLHYSSVVKLIQLSLRITDPLKTITAMIIMAAGTSYVFYSVPLSGTMWLQFLFAAASGMALYLGICLLTGLISVRDLDRVPFFRRRR
>NZ_CP009284.1|WP_042179649.1|5431532_5432318_-|DUF421-domain-containing-protein
MLQHITSHVFLTVLMYFFIFLCMRIMGKREIGKLSVFDLTISIMIAEIAVFVIDDIERPISDGVIPMVTLVAIQILVAQISLKSRKLRLLIDGRPSVLISNGKLHRSEMRRQRYNMDDLLLQLRGQNIVSPADVEFAILETSGQLTVIEKNKNVSSSNQSGNSSDTAENQEQNSGGGSGGSGKSGGSAGVNLSKSKIRYEGLPVPLIMDGKVQDDNLEMIGKNRFWLRTQIRQKGVSDFRDVFLCSIDHTGKIYVDRLRSR
>NZ_CP009284.1|WP_042179651.1|5432743_5433136_+|TIGR04086-family-membrane-protein
MYLIRRLFSWRISSPVLSGLCRSFMWMLLGAVVLSLLLWSSGMKEQDLAMYTYIVHGIAAAFGGLTAGRRAESRGWYQGALTGILYGVIVLLVGFLALDSTPAGIDGLWVLAAAAISAFGGIFGVNLQKS
>NZ_CP009284.1|WP_042179653.1|5433247_5434069_+|phosphatase-PAP2-family-protein
MNHVVLFTIITVVLLIWLGSRRNPLLAFLELGKELLRSYKFLLIVAGMISVLTFNKYELQIEKKMHLGSNFTSFIFGLEGHFVQQIQQLFYAPWLTPVIVFFYIFMLQSVLGASLGVYLLDKNRVMLYATCYTIMLVYAVAIPFYLYFPVNEVWSYAPAGVRFVMLDVFPRFEQEYRPLSGLNNCFPSLHTAISVSTAILAYRSGNRRWMAITTVSAALIVFGIFYLGIHWLTDMIGGTVLAVASTSVAVQLAKLTLRSGQDTLAVPSRVTNS
>NZ_CP009284.1|WP_042179655.1|5434153_5434459_-|preprotein-translocase-subunit-YajC
MFQLASTTGSGSILGLVGPFVLMFVVFYFLLIRPQQKKTKTRNSMLKALKKGDKIVTIGGLHGTIVELSDDIVVLRVNDVTKLTFDRGSISHAVTVAEEKE

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Crispr_ID: NZ_CP009284_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009284_13

5659310-5659399

Orphan

Consensus_repeat	Method
CTTTGTTTTACTAGCGTTACTTCCCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009284_13

>merge|NZ_CP009284|13|5659310-5659399|CRISPRCasFinder
CTTTGTTTTACTAGCGTTACTTCCCTGATCCATCTTCGGTAAAACTCACTTCGGAAGCATACACTTTGTTTTACTAGCGTTACTTCCCTG

>NZ_CP009284|13|12|5659310-5659399|CRISPRCasFinder
CTTTGTTTTACTAGCGTTACTTCCCTG	ATCCATCTTCGGTAAAACTCACTTCGGAAGCATACA
CTTTGTTTTACTAGCGTTACTTCCCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009284.1\|WP_042180019.1\|5660084_5660912_+\|TerC-family-protein	unknown	unknown	gnl\|CDD\|274742
NZ_CP009284.1\|WP_042180017.1\|5657795_5659169_-\|nitrogenase-cofactor-biosynthesis-protein-NifB	unknown	unknown	gnl\|CDD\|273539
NZ_CP009284.1\|WP_042179995.1\|5648034_5649177_-\|homocysteine-methyltransferase	unknown	unknown	gnl\|CDD\|183341
NZ_CP009284.1\|WP_042180011.1\|5655416_5656874_-\|nitrogenase-molybdenum-iron-protein-alpha-chain	unknown	unknown	gnl\|CDD\|162284
NZ_CP009284.1\|WP_042180006.1\|5652215_5653577_-\|nitrogenase-iron-molybdenum-cofactor-biosynthesis-protein-NifE	unknown	unknown	gnl\|CDD\|184699
NZ_CP009284.1\|WP_042180001.1\|5650512_5650923_-\|nitrogen-fixation-protein-NifX	unknown	unknown	gnl\|CDD\|131711
NZ_CP009284.1\|WP_042180022.1\|5661171_5663769_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369609
NZ_CP009284.1\|WP_042180028.1\|5666644_5668108_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|182112
NZ_CP009284.1\|WP_042180036.1\|5669721_5670060_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|376749
NZ_CP009284.1\|WP_042180014.1\|5656921_5657788_-\|nitrogenase-iron-protein	unknown	unknown	gnl\|CDD\|183906
NZ_CP009284.1\|WP_042180025.1\|5663945_5666312_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|306825
NZ_CP009284.1\|WP_042180033.1\|5669414_5669720_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99906
NZ_CP009284.1\|WP_042180008.1\|5653860_5655420_-\|nitrogenase-molybdenum-iron-protein-subunit-beta	unknown	unknown	gnl\|CDD\|130353
NZ_CP009284.1\|WP_156131187.1\|5672506_5672839_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042180039.1\|5670082_5672002_-\|transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP009284.1\|WP_042180003.1\|5650897_5652226_-\|nitrogenase-iron-molybdenum-cofactor-biosynthesis-protein-NifN	unknown	unknown	gnl\|CDD\|238928
NZ_CP009284.1\|WP_052419196.1\|5673019_5673772_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_CP009284.1\|WP_042179999.1\|5649962_5650529_-\|DUF269-domain-containing-protein	unknown	unknown	gnl\|CDD\|367430
NZ_CP009284.1\|WP_042180031.1\|5668088_5669411_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NZ_CP009284.1\|WP_042179997.1\|5649173_5649926_-\|HesA/MoeB/ThiF-family-protein	unknown	unknown	gnl\|CDD\|238386

Protein	Function_ID	Function_description	E-value
NZ_CP009284.1\|WP_042180019.1\|5660084_5660912_+\|TerC-family-protein	gnl\|CDD\|274742	TIGR03716, R_switched_YkoY, integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.	7.57428e-90
NZ_CP009284.1\|WP_042180017.1\|5657795_5659169_-\|nitrogenase-cofactor-biosynthesis-protein-NifB	gnl\|CDD\|273539	TIGR01290, FeMo_cofactor_biosynthesis_protein_NifB, nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. NifB belongs to the radical SAM family, and the FeMo cluster biosynthesis process requires S-adenosylmethionine. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation].	0
NZ_CP009284.1\|WP_042179995.1\|5648034_5649177_-\|homocysteine-methyltransferase	gnl\|CDD\|183341	PRK11858, aksA, trans-homoaconitate synthase; Reviewed.	4.46453e-153
NZ_CP009284.1\|WP_042180011.1\|5655416_5656874_-\|nitrogenase-molybdenum-iron-protein-alpha-chain	gnl\|CDD\|162284	TIGR01282, Nitrogenase_molybdenum-iron_protein_alpha_chain, nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases. [Central intermediary metabolism, Nitrogen fixation].	0
NZ_CP009284.1\|WP_042180006.1\|5652215_5653577_-\|nitrogenase-iron-molybdenum-cofactor-biosynthesis-protein-NifE	gnl\|CDD\|184699	PRK14478, PRK14478, nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional.	0
NZ_CP009284.1\|WP_042180001.1\|5650512_5650923_-\|nitrogen-fixation-protein-NifX	gnl\|CDD\|131711	TIGR02663, Protein_NifX, nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation].	1.33946e-37
NZ_CP009284.1\|WP_042180022.1\|5661171_5663769_+\|hypothetical-protein	gnl\|CDD\|369609	pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127. One member of this family, from Bidobacterium longicum, UniProtKB:E8MGH8, has been characterized as an unusual beta-L-arabinofuranosidase enzyme, EC:3.2.1.185. It rleases l-arabinose from the l-arabinofuranose (Araf)-beta1,2-Araf disaccharide and also transglycosylates 1-alkanols with retention of the anomeric configuration. Terminal beta-l-arabinofuranosyl residues have been found in arabinogalactan proteins from a mumber of different plantt species. beta-l-Arabinofuranosyl linkages with 1-4 arabinofuranosides are also found in the sugar chains of extensin and solanaceous lectins, hydroxyproline (Hyp)2-rich glycoproteins that are widely observed in plant cell wall fractions. The critical residue for catalytic activity is Glu-338, in a ET/SCAS sequence context.	9.93755e-156
NZ_CP009284.1\|WP_042180028.1\|5666644_5668108_-\|6-phospho-beta-glucosidase	gnl\|CDD\|182112	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional.	0
NZ_CP009284.1\|WP_042180036.1\|5669721_5670060_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	gnl\|CDD\|376749	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.	3.51879e-36
NZ_CP009284.1\|WP_042180014.1\|5656921_5657788_-\|nitrogenase-iron-protein	gnl\|CDD\|183906	PRK13234, nifH, nitrogenase reductase; Reviewed.	5.67814e-178
NZ_CP009284.1\|WP_042180025.1\|5663945_5666312_-\|hypothetical-protein	gnl\|CDD\|306825	pfam00395, SLH, S-layer homology domain.	4.06091e-06
NZ_CP009284.1\|WP_042180033.1\|5669414_5669720_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99906	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	7.50019e-35
NZ_CP009284.1\|WP_042180008.1\|5653860_5655420_-\|nitrogenase-molybdenum-iron-protein-subunit-beta	gnl\|CDD\|130353	TIGR01286, Nitrogenase_molybdenum-iron_protein_beta_chain, nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length. [Central intermediary metabolism, Nitrogen fixation].	0
NZ_CP009284.1\|WP_052419196.1\|5673019_5673772_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	5.97772e-52
NZ_CP009284.1\|WP_042180039.1\|5670082_5672002_-\|transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	7.00974e-45
NZ_CP009284.1\|WP_042180003.1\|5650897_5652226_-\|nitrogenase-iron-molybdenum-cofactor-biosynthesis-protein-NifN	gnl\|CDD\|238928	cd01966, Nitrogenase_NifN_1, Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).	4.25084e-172
NZ_CP009284.1\|WP_042179999.1\|5649962_5650529_-\|DUF269-domain-containing-protein	gnl\|CDD\|367430	pfam03270, DUF269, Protein of unknown function, DUF269. Members of this family may be involved in nitrogen fixation, since they are found within nitrogen fixation operons.	2.83139e-31
NZ_CP009284.1\|WP_042180031.1\|5668088_5669411_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	2.87445e-117
NZ_CP009284.1\|WP_042179997.1\|5649173_5649926_-\|HesA/MoeB/ThiF-family-protein	gnl\|CDD\|238386	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). .	6.91222e-79

>NZ_CP009284.1|WP_042180017.1|5657795_5659169_-|nitrogenase-cofactor-biosynthesis-protein-NifB
MMQPSCISNEAEEEISRHPCYSEEAHRFYARMHIPVAPACNIQCNYCNRKFDCVNESRPGVVSEVLTPEQAERKVKGVASQLMQLSVVGIAGPGDPLANPEQTFDTFARVKRYVPDVSLCLSTNGLTLYRHVDEILELGIRHVTITINAIDADVGQHIYPWVFDEGVRYEGREAAELLISRQLQGLEMLAKLGILVKVNSIMIPGVNDHHLPAVSKRVKELGASLHNVTPLIIAPGSQYEADGRKAPRPKELHNLQELLGRDGMKVMRHCRQCRADAIGLLGQDRNQDFPLEAMEADPVINQEARAQFQSDLDTKIRERVIAKQARAKGRWEDSQKTRVAVATRGGDKVNQHFGHATEFLIYDTDGAEVKLIGVRKIQAYCHGKADCNGDKAATLQEIISILSDCRILLCSGIGDGPRASLNKIGVLPLVRKGGIQEAILESVKYSSYFENINISKG
>NZ_CP009284.1|WP_042180014.1|5656921_5657788_-|nitrogenase-iron-protein
MRQIAFYGKGGIGKSTTSQNTLAQLATKFGQRIMIVGCDPKADSTRLILNTKAQQTVLHLAAELGSVEDLELEDVLQKGFGDIINVECGGPEPGVGCAGRGIITAINFLEQEGAYTDLDFVSYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNIARGILKYATSGGVRLGGLICNSRNTDREDELIMELARRLNTQMIHFVPRDNVVQHAELRRMTVAQYNPEHQQAKEYEILAEKILNNKMLTIPTPITMEELEELLMEFGIIEDEEAAIKKLQASGQ
>NZ_CP009284.1|WP_042180011.1|5655416_5656874_-|nitrogenase-molybdenum-iron-protein-alpha-chain
MGLDIEANKKLVEEVLEAYPKKAKKDREKHYQINTEEAQTCGTCALKSNIKSRPGVMTPRGCSYAGSKGVVWGPIKDMVHISHGPIGCGQYSWATRRNYASGTLGIDNFTAMQVTSDFQETDIVFGGDKKLEVIMREITEMFPLAKGISVQSECPVGLIGDDIEAVSKKMSRELEMPIVPVRCEGFRGVSQSLGHHIANDAIRDFVLGKADLAETGPYDVNIIGDYNIGGDAWASRILLEEMGLRVIAQWSGDGTLNELEIAHKAKLNLIHCHRSMNYMVEHMEKAYGIPWMEYNFFGPSKTYESLRAIAALFDETIQANCEKLIAKYKPQMDIIIDKFKPRLENKKVLLMIGGLRSRHTIGAYEDLGMEIVASGYEFAHKDDYEKMFPMLKEGAVIMDDPTAYELEELAQKMNIDLVGSGIKEKYVYHKMGVPFRQMHSWDYSGPYHGFDGFKIFAKDMDMTVNSPVWNLMKKKEKVQKEEASI
>NZ_CP009284.1|WP_042180008.1|5653860_5655420_-|nitrogenase-molybdenum-iron-protein-subunit-beta
MSKDRLDIPDYNTLFSEHRFVEQRLNKQQFEAPCSEQETAEALAYSQSAEYMEKNFNRKAVVINPHKACQPLGSIMAALGFEKTLPFVHGSQGCNSYFRSHLSRHFKEPTPAVSSSMTEDAAVFGGMSNLIDGLENSIALYKPEMVAICTTCMAEVIGDDLSSFIGNARNKGVITEDFPVAYCNTPSFVGSHITGYDAMMKGILSYLYERSGLEAVPGSGEETGEKLNVMLGFEPYTGNFTEIRKILEAFDTKYTLLGDHSGNYDSPATGEYEYYYGGTKLADVPLAANALGTLSLQKYTLKKTQDYISGTWKQQVTALSTPLGITGTDKLLEAVSEMTGLPLPASLLEERGRVVDALTDSHPYIHGKRVALVGDPDLLIGLIGFCLEVGIEPVHIVCSNGDVDFNEVKFKEEAEALLASSPYGSEASLYIGNDLWHMRSLLLNDPVDLAIGSSHLKFAAKDANVPLIRVGFPIFDRHHMHRYPILGYQGALNLLSLIVNTVLDELDRNNSGFNYDLVR
>NZ_CP009284.1|WP_042180006.1|5652215_5653577_-|nitrogenase-iron-molybdenum-cofactor-biosynthesis-protein-NifE
MDPVRKVDFDSEACGSQAPKSKPCPRPKPGEAAGGCSFDGAQITLLPIMDAAHLVHGPIACAGNSWESRGTLSSGPSLSQYGFATDLNDSDIIFGGEKKLKESIDYIAGRFAPPAIFVYSTCVTALIGEDMDAVCKEAADRLGIPVVPVNSPGFVGSKNLGNRLAGDALLQYVIGTGEPQPETPLGINLIGEYNIAGEMWDIEKLMNSAGISVTSRITGDARYNEITWAHRAKVNMVVCSRALLGLAKEMEARYGIPYFEGSFYGAKETTYSLRQMAYLMNDREMERRVDRLTEREENRLAQDLRPYRKILKGKKAVLYTGGVKSWSVISALKELGVQVVGVGTNKSTEDDVRRIADRVGDDTEYIPEGGATRILKTVRERKADIMIAGGRNMYVAMKEQIPFIDINQERHKAYAGYEGLLRLAKELTYSLANPIWRLAASPAPWDREVPYDR
>NZ_CP009284.1|WP_042180003.1|5650897_5652226_-|nitrogenase-iron-molybdenum-cofactor-biosynthesis-protein-NifN
MTVNRRKKPASVNPIKIGQSLGAVLALQGCYRAMPLIHGSQGCSAFPKALLTRHFREPIAVQTSALQEMDVIFDANRNLEEALNMVLSKHRPDIIGIIGTELTDVAGVDYATMLKSYKRERNLRGGLAFSVVLPDFRGSLESGFSTTVEAMIDEMIQQAGHRGSRTMNTRQITLLPGSFLTPADVMELKEMISAFGFDVIAVPDISTSLSGHLLTGFSPLTRGGVPLDSMQQSLQSGLTIAVGASMERPARRLHNALGTPYKVFSGAMGLKASDELLHFLHQISGEPVPLRYCWQRENLLDSMLDAHFQFAGMSAVAALEPDHLCSVSGWLEELGVEQKALISSFETPLVDSMEREIWIGDLDDAEVLGKGADLWISNSHGITGAARIGAAFMPAGFPVWNELGAYMSVSVGYRGAMEWSNKAGNLLMQREAGHRESSIRHR
>NZ_CP009284.1|WP_042180001.1|5650512_5650923_-|nitrogen-fixation-protein-NifX
MKVAFATDDGIRVNAHFGQSPMFAIYNVTKQGSELVELRRLPVVLNQDEAGKIESRLEAVGDCTLIFIMQIGASAAARVTRRKIMPVKVPLGSPIEEQVKRLAEMLQGKPPMWLAKVLRAEEEGLTEGEEADGTHG
>NZ_CP009284.1|WP_042179999.1|5649962_5650529_-|DUF269-domain-containing-protein
MEPMANESPAISEGALREAAQLKRLSRPARKAVDQETADALVRRLCSLLDAEDFFGRYAALPPGEKIAQQFLASAKDQSESEFNCAVSPKVRQQVPLLFQAIAGVIEERSGTMIQSTAEINGEGFGRGLLYSGRVILVLKSLRAGFPFPFTSEEKVIRYGVECVTEGLAFLAKYKEVTALHGLLSLEG
>NZ_CP009284.1|WP_042179997.1|5649173_5649926_-|HesA/MoeB/ThiF-family-protein
MEQLAGEAELERYARQLKLLGEDGQRALKEATVMVAGIGGLGGTAALYLAAAGVGKLILAHEGIILPPDLNRQILMDSESLGMERISTAAAQLKRLNPHVEIEGYNAKIEYEQAKPWVESADIVIDARYDFPERYALNRLCVDTATPMVEAAMYGFEISLTTMIPGLTPCLECLYPDVKPHWEPFGFPVLGATSGIAGCLAALEAVKWITGVGTTYAGVMHRFSSLDFACYSVTITRNPNCACCGEGGRP
>NZ_CP009284.1|WP_042179995.1|5648034_5649177_-|homocysteine-methyltransferase
MKSLKLCDTTLRDGEQAAGVSFTRAEKLEIAKLLSECGVEQAEVGIPAMGRREQEDIAAIAELGLPMKLMTWNRSTPGDIDKARSTGVDWAHVSIPVSDIQLQGKLGLTPLEGLNKLLRTAEYGLRAGMTVSVGMEDSSRADMQFLIQVVNTLYKEGIRRFRYADTVSAHHPGQMAGRIQSLLGAVPDDVELEVHCHNDFGLAAANTLSGIAAGAVWASTTVAGIGERTGNAAMEEVAMAWRHLYGGECGVRLDLLKGLADVVIAASGRNVGDAKPIVGQLAFTHESGIHVDGLMKEKATYQTFDPAEVGRAHRFVLGKHSGSGGVAHVLEQRGLEVSPETASRLLERVREYAEARKGNVPEVMLLQWLMEEQQRAQSAV
>NZ_CP009284.1|WP_042180019.1|5660084_5660912_+|TerC-family-protein
MDWGLLLEYGWVLLVLVALEGLLAADNALVLAIMVKHLPDEERKKALFYGLAGAFVFRFGSLFVISYLVDIWQVQAIGALYLLFIAGNHIFRKLLIKKPVTDEAVESGSPKAVDKKKAGFWFTVLKVEVADIAFAVDSILAAVALAVALPPSGIGHIGGLDGGQFLVIFAGGFIGLIIMRFAASFFVKLLHTRPGLEIAAFFIVGWVGVKLTVITLAHPTLGVLSEDFAHSTWWKTTFYVVLIIIAATGWFMSSKVEEVKTDENPIKEVDQQLGK
>NZ_CP009284.1|WP_042180022.1|5661171_5663769_+|hypothetical-protein
MTTNNTAPLNQENSLLHDFRLDQVTVTDPYLVNAFSKEVLYLKSYDLDRLAAGFRENRGLPARGEKYPGWESTEIRGHTLGHYLSALSQAYATTRSSHLLQRLEYLIDELALCQFDSGYLSAFPEQLFDNVENRQPAWVPWYTMHKIIAGLNAAYRATGSNTAYALVTGLGNWVHRRSTGWSAEIQERVLSVEYGGMNDCLYELYTISGDERHLHVAHMFDELSLFTPVHEGRDILKGKHANTTIPKFLGALNRYRVLGESERFYLEAAQQFWDMVVLHHSYITGGNSEWEHFGDPDILDAERSNFTAETCNTYNMLKLSRELFKITGETKYMDFYENTFINAILSSQNPDTGMTMYFQPMATGYFKVYSSAFDHFWCCTGTGMESFSKLNDSLYFHGGGSIYVNQYISSTVLAEEYGIELIQTANLPYQDTAEFRIRTLKEPARPVALHLRLPDWLAGEAELTLNGQKQALNLSGRYAVLERTWSSGDTFSLRLPMKPSCHTLPDAANVAAFRYGPVVLSAALGTEELAESATGVDVSVPTRNMLVKDFITPAGQSAESWLKDFDQHFIQKDGELAFVLQGTDEDGRLEFTPHYKQHEQRYGIYWKLVEADSAELQEHILQGKQRQRVEDATIDSLPVGNDQYELEHQIKGEHTTVATWDGYNIRQAGNNGWFSYRLKVLPRQDNYLSVTYFSGNNGKTIDLYADGKLLASDTLMTDKPRSFYSKSYLLPAAAVQERTELEIKFVVPGAMNGIFDLLRLMSGFDQTAALERLSFDTGALDQPFNADRSSYTLTVPYNTQAVALTAGLSHKNALLYCGGILIDDTRPRTVFLQEDSTLLTLTVKAEDHVTAKDYTITILKNRELV
>NZ_CP009284.1|WP_042180025.1|5663945_5666312_-|hypothetical-protein
MSNKRKPLIRQTAKAALITSVAVALMLPGGLAAAADSSSSVTVQAVPANAAQAGAETPDPAEAKVTQEQAVAKVKALFPVLKDATVSYTQLGSGNSYPMNPDQLTWNIQWEFRTGSSTFGFSSEVDAMTGDLISTYLYSPFTGQADNFYPPKVSRAEALEKAKSFISQAAPTLKSSDLQQDENIIMNESALFGPVQYSFYFNLLVNGLPSSNDSVRVTIDGGGNVMQFNKTTSGLKYPSAKPAVSKEQAEKIFKETFDVTLYYTPVYKKGEVDTWVLGWRPQNEALYPIDAQTGKRIDYEGSDVGAVPVVYEAVPAGKEIFKPVTGGKELTVDEAVKQVKKVAAIPANRKLIGQTLSANYQNGKQKVWSLVWSDTSEVNMTGMPGRTYAEVNATTGEVLQFQVEQYSFPLDTTQKAEAVPAGSKKLSQAEAKQQALSLINRVYDQASSNLKLAEHGGTWSVLPNDKGYRFEFQRYYDNIPVSENAITIALDLYGKLQSYQNYNYAVLSKITKQPAPVVTKAEALQKYLSLYSLKLQYSTSGGYFSTGGYTDPTVSLVYSPALIDVSKPYDVLNAQTGKWFAMYDYNLGGQSVPADSVVDIKGHAAEKQLAELLKYGVIAPDAEGKLSPDQVISVGDWLNYIAKASTPYYTQYTASADNNTVAGVSPDSLYYGAVNYAVSRSWLDKDAVVKPEDSLTREQLAVLLASFLKYSKLAAFLDNDATVTSFSDSTSIKDKGAVALVVRLGLLQGDNGRFNPQQQVTKAQAAAVIMKLVELQGKTDTAIGQQYM
>NZ_CP009284.1|WP_042180028.1|5666644_5668108_-|6-phospho-beta-glucosidase
MPSPFPKEFLWGGAVAANQVEGAYNEGGKGLSTSDVVKYCPPGERKSLEQLLSMSRAALDEAISDEGDGNYPKRRGIDFYHRYKEDIALFAEMGFKVFRLSISWPRIFPTGEETEPNEAGLCFYDEVFDELRKYNMEPLVTISHYEMPVHLVNKYNGWASRELVELFLRYADTVFNRYKDKVKYWLTFNEINCTLKAPFLGAGIIMDGVENEKQVAFQALHHQFVASSLAVKRGREINPEFRIGCMLARKLLYPYSCRPEDVLQAQAENQMAQFCSDVQVRGYYPSYIQRHLKKHGVSIDMLPGDEEILQENLVDFLSFSYYMSSAVSTDNSITATTAGNLSSGLANPYLQTSDWGWQIDPIGLRVVLKEMHDRYQIPLFVVENGLGAADEVAEDGSIQDDYRIEYLAQHISQMAEAIEDGVELMGYTSWGCIDLISASTSEMRKRYGYIYVDQDDEGGGTLARLRKKSFYWYKQVIASNGAELHNS
>NZ_CP009284.1|WP_042180031.1|5668088_5669411_-|PTS-sugar-transporter-subunit-IIC
MAGAAEWRSKIQKVSTKIQKNTYISAISNGLMALMPILILGAIFSLINALKLEPYQNFLESTGLKDYTSIPATVTTDVIALYAVFSIAYNFATQHKQQGFSAGILALMSFLLVTPKGLLDDGATKAFGYSWLGAKGLFVAIILALVVGKIYTFVLEKKFYIKMPKGVPPTVEKSFAALTPGFIVAILMLIFSAIFAATKYGNMHEFVFSIIQLPLTSLGGTWWAMLICIFVIHLLWFFGVHGTLVVYSVVGPIWVALGLENLDAYQRGVEGTHIIGSPFFPVYVLIGGAGATLGLIIAMLFAKSTRYKTLGKLAIVPSLIGVNEPVIFGMPLVLNVRFMIPFIVTPLVSSGLAILLTTIGVLPVLHGIQVPLGIPVLVNGWMNGGWRVSAFQLVMIGASFLIYYPFFKKADAEALEQEQQAEAAAAGKEKGGIPNAQPVS
>NZ_CP009284.1|WP_042180033.1|5669414_5669720_-|PTS-sugar-transporter-subunit-IIB
MKKILLACAGGFSTSMLVERMKESARSKGIEVMIDAVAESDIADQTPFDIIMLGPQMGHAEGDLAAEYPDIPVTTIDMMDYGMMNGDKVLDTAIELMEKGA
>NZ_CP009284.1|WP_042180036.1|5669721_5670060_-|PTS-lactose/cellobiose-transporter-subunit-IIA
MDYEQTIMQIIASSGEARSLSLKAVRTARAGNLEEAGTLIKSAKESLTKAHKVQTGLIQAEGRGEKTEITLLMIHAQDHLMNALTVRELAVELIEEVKERKALEQQLKGLVN
>NZ_CP009284.1|WP_042180039.1|5670082_5672002_-|transcription-antiterminator
MREYTIVNILYTRKVPVKMNELTAELGLSERTVRDVLRSLDKTAERHGFGIRMIRGQGYLLEIRDEQQFYLYREKAMLQSNEVDLDNKQSRQQYLLFYLLQSDSHQSMDRMAEEMGVSRSTIISDLKEVEQRLAAFRLKLARRAHYGMRIEGDEKDFRKAFSYFILQPGHTLQHTEDFRTYEREFDIARLKAYLLQILKERELKISDVFLDNIVTHLFILLYRVSKHNFIVAGQAVQSNPEPLYRELADAIAGWIRTHYQITLPADEVDYLALHISGKTIMERMSEETKSHLREGISGILERLDREFLTGFNQDHDLREALLLHMFPLLNRLYYNLQLGNPLVEDVYSQYANVFVISFRFAEIIEEQYGFRMSRDEAGYVALHFAAHLERMQQRNLEKFKRIAVICSTGAGSAQLIRLKLEAVFPKASVITASITEVEEISSKPVDLILSTVPLATEIKEKPVIHIKQLLDDQEIQRIKEILSLQINRTKPSYKLMDFKELFRSELFHLAGPDDYTDLLKLRCREMVEHHYAAEDFPEQVLFREQKFTTIYKNGVAGPHPMRMSAIRDCISVTVLKKPLVYEGKPVQLIFLINLGPGQLFLHKEISKLLLVLMEKEDSRSRLLSVNSYEQFIHEIENLL
>NZ_CP009284.1|WP_156131187.1|5672506_5672839_-|hypothetical-protein
MDEMRGKNPSDTAGSGGMYEMKGKNPSDTAWSGGMDEMRGKNPSDTAWSGGMDEMRGKNPFDSAGNGGMDERKGKNPSDSAGSSGMDERKGKNPSDTAWNGASPPHYEPH
>NZ_CP009284.1|WP_052419196.1|5673019_5673772_-|ABC-transporter-permease
MVMNKRINHVLRLLFVFAGMNLVWYVVYLLMNHPILPSPGSVYKAMLQLEGHEVLLNVGYSLLRILEGVLLALLIGLMIGLLMGRSPLWNKLLDPVVYLTYPIPKIALLPVVMLFFGLGETSKVLMIMLILLFQIIISVRDGIKAIPETTYDVLTSIGASSMQKFWNVTLPGALSVILSTIRVSLGTAISVLFFTEIYGTEHGMGFFIMDAWLRLDYPEMYAGIMLFSLVGFVLFLLVDLLDYWFMKWRR

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Crispr_ID: NZ_CP009284_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009284_14

5700806-5700936

Orphan

Consensus_repeat	Method
CTTGGGGGCTCAAATCTGATACCTCGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP009284_14

>merge|NZ_CP009284|14|5700806-5700936|CRISPRCasFinder
TAATGGGGGTCGGATCTGATACCTCGAAACCTCTACTTGGGGGCTCAAATCTGATACCTCGGGGGTATCAAATCTGATACCTCGGGTTTCTGAATCCCCCGATTCTTGAGGGCTCAAATCTGATACCTCGG

>NZ_CP009284|14|13|5700806-5700936|CRISPRCasFinder
TAATGGGGGTCGGATCTGATACCTCGA	AACCTCTACTTGGGGGCTCAAATCTGATACC
TCGGGGGTATCAAATCTGATACCTCGG	GTTTCTGAATCCCCCGATT
CTTGAGGGCTCAAATCTGATACCTCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009284.1\|WP_081947883.1\|5702265_5702511_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|238038
NZ_CP009284.1\|WP_042180126.1\|5703399_5704161_-\|recombinase-RecT	unknown	unknown	gnl\|CDD\|367688
NZ_CP009284.1\|WP_042180138.1\|5706813_5707008_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_052419200.1\|5697132_5697780_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377297
NZ_CP009284.1\|WP_042180129.1\|5704164_5705796_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224116
NZ_CP009284.1\|WP_042180099.1\|5696134_5696335_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_081947736.1\|5700057_5700510_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|288299
NZ_CP009284.1\|WP_042180097.1\|5695814_5696153_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_156131191.1\|5706563_5706842_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_156131189.1\|5696325_5696469_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_156131192.1\|5706998_5707208_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042180110.1\|5698718_5700068_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273206
NZ_CP009284.1\|WP_042180102.1\|5696647_5697121_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042180107.1\|5698486_5698747_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042180104.1\|5697779_5698484_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274373
NZ_CP009284.1\|WP_156131190.1\|5706366_5706534_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042180120.1\|5701318_5702083_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042180132.1\|5706066_5706261_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_081947737.1\|5702603_5703431_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378917
NZ_CP009284.1\|WP_042180094.1\|5694315_5695818_-\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348

Protein	Function_ID	Function_description	E-value
NZ_CP009284.1\|WP_042180126.1\|5703399_5704161_-\|recombinase-RecT	gnl\|CDD\|367688	pfam03837, RecT, RecT family. The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to RecT.	2.54716e-22
NZ_CP009284.1\|WP_042180110.1\|5698718_5700068_-\|hypothetical-protein	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	5.37206e-106
NZ_CP009284.1\|WP_052419200.1\|5697132_5697780_-\|hypothetical-protein	gnl\|CDD\|377297	pfam04312, DUF460, Protein of unknown function (DUF460). Archaeal protein of unknown function.	0.00120761
NZ_CP009284.1\|WP_042180129.1\|5704164_5705796_-\|AAA-family-ATPase	gnl\|CDD\|224116	COG1195, RecF, Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair].	2.48125e-07
NZ_CP009284.1\|WP_042180104.1\|5697779_5698484_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274373	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily. This group of similar sigma-70 factors includes clades found in Bacilli (including the sporulation factors SigF:TIGR02885 and SigG:TIGR02850 as well as SigB:TIGR02941), and the high GC gram positive bacteria (Actinobacteria) where a variable number of them are found depending on the lineage.	2.02732e-24
NZ_CP009284.1\|WP_081947736.1\|5700057_5700510_-\|hypothetical-protein	gnl\|CDD\|288299	pfam11417, Inhibitor_G39P, Loader and inhibitor of phage G40P. G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C terminal is essential for helicase interaction.	4.63803e-08
NZ_CP009284.1\|WP_081947883.1\|5702265_5702511_-\|HNH-endonuclease	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	0.000217163
NZ_CP009284.1\|WP_081947737.1\|5702603_5703431_-\|hypothetical-protein	gnl\|CDD\|378917	pfam12684, DUF3799, PDDEXK-like domain of unknown function (DUF3799). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 265 and 420 amino acids in length. It appears that these proteins are distantly related to the PDDEXK superfamily and so these domains are likely to be nucleases. This family has a C-terminal cysteine cluster similar to that found in pfam01930.	2.2747e-78
NZ_CP009284.1\|WP_042180094.1\|5694315_5695818_-\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	4.84428e-27

>NZ_CP009284.1|WP_081947736.1|5700057_5700510_-|hypothetical-protein
MNNHRRRAACWTGLYRGRWRALDRVGVTLLLKYLSAAYRSFVISDDEVLDVIGVWEDILRDIPNEDVMQAARRLCRENNSFAPTPGEIYQACIQSGKEMTVYQIQQQEQELRMLELQEYHETEKVGPMPDHVREKLDAIFKKARVTEDES
>NZ_CP009284.1|WP_042180110.1|5698718_5700068_-|hypothetical-protein
MNLDAERAVLGSLLKDHALMDDCFLGPDDFTEEEEDNRLLYKVLQYAKENADGAADPFDPIVLVSRWGARLQRIGGLTRLMALRDAVPSTESFLYYQRAVRTERIQQDLVHLGRQIAINGGGDIAELKAKMEQLEELLQGESGGPVHMASLLEGHERVIAKRANSGGITGAKTASEGFTQLSKGHQIGDLEILAGRPSMGKTLFMVNDMDAVTSSGWADVVFSLEMGALEIVEQMASCIGGIQKDRIASGQMSDNDWIRYGDALEIIAGRHLFIDDKPGTTVEYIRRQVKSLKKKHPGRRWVIHIDFLQFIQTEKNFDSTKERIGYITKYLKRMARELQVSVVCLSAVGRNCEQRPDKRPLMSDLRDSGDIESDADIVAFIYRDEYYYPESPKKGFAEVIIAKGRKIGTGTFDMGFSPGISRFINLTKDERYKLAEKVREHEQQRSNRR
>NZ_CP009284.1|WP_042180107.1|5698486_5698747_-|hypothetical-protein
MSSSGRIEDETGYESSLAWLVEKAKLLDDPLTLSKAERIKLQRTYDFVEQRVLEYRRGQLLLTEPWRRKIYDEAGLKYQEFNGGKG
>NZ_CP009284.1|WP_042180104.1|5697779_5698484_-|sigma-70-family-RNA-polymerase-sigma-factor
MPVTADLQQAGPRYYNPHLGDVDEFILRYKALVFSVAYKCQRRTRLKVDVEDLAQEGFVSLLRAYSDFDPARGEFTTFAVPRMRGRIMNYIRDKVPIVRAPRNIYYLAGSILLHKKADMSPDELAKEFRCPVDHVNKALEQIETAIHLSLFQGSDSKSELIDSFVTEADYTRIFVHDFKQNILTEREKFVLELSLSGISQQVIAEHLNCSQMTVSRAYQRVQKRAAKYFGIEVT
>NZ_CP009284.1|WP_052419200.1|5697132_5697780_-|hypothetical-protein
MRFVGIDPATTTGFVALDEEGNVLVATDVRGEGKRIPGGISTGMLVSLENKVYNLLRPGDIIAIEEPAVHTQMAVTAGMIHGGLRSMIYRKELEFVDVNPQRTKGFVNRNQRVESSEKKKHVAAGVLEHYGFEHSSDNVADAYIIARIAQAVYRVKNGASLDLYTSYQQRIIQAILQPEAKPPKSKKGKSQTVKRPGKPAAAGSHIQNTEQTLLF
>NZ_CP009284.1|WP_042180102.1|5696647_5697121_-|hypothetical-protein
MSNQVEAIVTFNDGIAYVLSQPVEFTYYKQGDLIIGLDDTCTFVSCYFYERPSMGFKAFGGREFDITLENGEVIHCDGQWWDGGYQKAEKLLGEELVRVTYEDIESLKKCYVFSGCKAIASSLSKLRETYDGEVQGYWAYEALLKGRDKPIREDRKQ
>NZ_CP009284.1|WP_156131189.1|5696325_5696469_-|hypothetical-protein
MKTVIRFRDDSGRIVATARREEQQDAIGVLWDFSLALLLLGLVLLWL
>NZ_CP009284.1|WP_042180099.1|5696134_5696335_-|hypothetical-protein
MVVADKRLQQLERLLQIAEDRVAELPAGTGGARLSSAVEERDRVRQQLEEYKAGIMKEGQSCAKAP
>NZ_CP009284.1|WP_042180097.1|5695814_5696153_-|hypothetical-protein
MCKGTLNTEDVYLVKVQHIPADHIAKLANPQWIAEHGGIPVDRCIGLEVERLINAGVITVGSCCGHGIAPAVALVSEQSRGLLHRIGYEVKALSAEHTSAGIYQIVLKGGSS
>NZ_CP009284.1|WP_042180094.1|5694315_5695818_-|DNA-cytosine-methyltransferase
MREIIVDSFAGGGGASTGMELALGYSPDIAINHDPEAIAMHKANHPETEHYCEDVWDVDPVKATRGRPVGLAWFSPDCTHHSKARGGKPREKKIRGLAWVVIRWAIAVKPRVIILENVEEFQDWGPLDEEGQPIPEEKGRIFESFVECLRQLGYAVDWRELVACDYGAPTSRNRLCMEMRRDGKPIVWPDPTHGSPDSLEVQAGKRKPWRTAAEIIDWSLPCPSIFDSDKEIKRTYGLKVKRPLADSTQRRIAHGLVKFGFDNPNPFIVTVNHSGDGFRGQGIDQPLGTMTSKNGYGLVLPFLTKYHGEIKGQEARGQTLDSPLLTLDTSNRFGLVTANIIKFRGTNIGQSINEPLHTITAGGNHHGLVYAFLVEYYGSSIGQSLNSPLHTIPTHDRFGLVIVHVMGEPYVVVDIGFRMLTSRELYAAQGFPGTYIIDGYRANGRPVQKHQQVAKCGNSVSPEMARAKVLASVPELCIGSGRALSLERYKAAVGQMEFSL
>NZ_CP009284.1|WP_042180120.1|5701318_5702083_-|hypothetical-protein
MVVVMEIQVFDTCKVVESGKYQARLLIDENKIILFAGLKSWPAQIVSGTHAGTVIRHVDYIKTSDLPASSEVQMQNTRMIEQLAEAARKITACNNRTLQLEEELRVAGLSLVSQRNELEVERNGKKRVKLPKEIVEALQICATAGLKGTRLISYLPVTNQLFIDFDRIVIESLDKIRDFCFKDSNEPDLILKAMVYGYTSVPEKNGLKEYRNEVTRIIQKWWNTIPPADGKHDPERLTDQIFDYLQNEDGKLPF
>NZ_CP009284.1|WP_081947883.1|5702265_5702511_-|HNH-endonuclease
MEDIFQRDGYRCVKCGTGRDLEHKPHHVVFRSQGGPGTVDNGVTVCRACHRWAHKSREGRIWFEQFIIRLYGSLNGADPHE
>NZ_CP009284.1|WP_081947737.1|5702603_5703431_-|hypothetical-protein
MTELLKLTKDNYFSPEASRQYMSVSQFKSFVPAYGGCEAAALAKLAGDWEDPEKDALEEGKFIHAWNEGTLEEFKESNPQMYSSRGATKGELKANFKRCLTMIEVLESDPMVKKVLAGEKEVILTAELFGIQWKAMLDSYQPGVVFADLKAMKDMDGKHWNKESQAYENFIEHYGYSIQMAVYAEVERKSQGRAAEEWLLPHMVVVTKQDPPDHEILYFDFDAIAASLRVVGNHIERVKQVKSGEVEPVRCESCEYCRVTKQIKRIKHFSELSLY
>NZ_CP009284.1|WP_042180126.1|5703399_5704161_-|recombinase-RecT
MTIAIETQVQETLDRILDSKHDALPSDFNKKRFSENCKVYVFDDKDLHKYTADEIAANLFKGAVLGLDFLAKECHLISGGVDLKFQTDYKGEMKLTKKYSIRPLLDVYAKNVREGDEFREEVIEGRQVIHFAPRPFNTSKIIGSFAVAFFHDGGMVCESIPAGEIEEIRKNYGKALGDAWDKSQGEMYKRTVLRRLCKTIETDFDAEQRLVYDAGGAFEFTKQPARSRQQSPFNPPEESEVIQNDRAAETDQG
>NZ_CP009284.1|WP_042180129.1|5704164_5705796_-|AAA-family-ATPase
MLHIKKLEVKNFLGITEFEFSPGKITKISGDSGVGKTSLIEALEKALTNVSRRKEVIRHGEDEAQLFVELDDGLQVTRKLRTEKADYIKVKHASKAVSSTEGFLKQFINGDIFRPIEFIHKDPKEQTEIILNMLQVEWTVDSIKAWFGELPEADYQLHILQILKQIENLYYAERKFINGEINLLRANIEGIKRDLPPNYDGEQWRGVNLQELYRKLSDAEDSNKRLEEAQRLVDGLALRVDDIRQRAATAREGKRLEYNRQRDSLQTSISTINRTIEDEQAKIDAVDRRISDEQIRLDNQLQQEIERLKAQFTAKKQFAKDTIQQEADQSRAFISEYQSQLSEASTKLSNVGALEQKDIERIDEYEQQQIELEQTKTGNAQQIVSETEWSDPAPLKAAADEATRMKEFLREWERMNDIIREKLTPKEERSASLTAKITTARDLPKEILKTAALPVEGLEIDEKGNIRINGTLLDGLSEGESMEFAFKLAKAQAGELKVICVDGWQNLGSRQQEIISAAAADDYQYFVLETVEGKPLTTEPLEG
>NZ_CP009284.1|WP_042180132.1|5706066_5706261_-|hypothetical-protein
MEFELSNDSLMKALPALLGAYPSVARALKAYFDELVKVGFSEAQALHIISVQGVMGGLNGGNGN
>NZ_CP009284.1|WP_156131190.1|5706366_5706534_-|hypothetical-protein
MLKEVTELVGKTGTLTQSITITGAFLGENGRVDVLVKDDHGNEFWVEHGPNVSLI
>NZ_CP009284.1|WP_156131191.1|5706563_5706842_-|hypothetical-protein
MTIIIRSTVKCPYPNCGHTGDVITALHCRTAHNMERKELFGKYGKPEGVKFDTQAEKKNLERHVMPKPLNTGYPSNTAHAKDMRTSRSKKKR
>NZ_CP009284.1|WP_042180138.1|5706813_5707008_-|hypothetical-protein
MRIDDELLDRLGDYFIDHRIGYAFNITFEQFLEEFQRGRWQIAALLISWKGVPKAYDHHYPQHC
>NZ_CP009284.1|WP_156131192.1|5706998_5707208_-|hypothetical-protein
MGTSESLLHKAELIRYHREQMWYWTQALQQAKEAKDENMVRQAIRERREHTNALLSLWATKAEELAVCV

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Crispr_ID: NZ_CP009284_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009284_15

5755182-5755279

Orphan

Consensus_repeat	Method
AGCTGCAGAGCATTTCTTCGTGTAAAACTTGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009284_15

>merge|NZ_CP009284|15|5755182-5755279|CRISPRCasFinder
AGCTGCAGAGCATTTCTTCGTGTAAAACTTGCTTCGAAAGCATACGCTTAGTTTTACGAAGCATTAGCTGCAGAGCATTTCTTCGTGTAAAACTTGCT

>NZ_CP009284|15|14|5755182-5755279|CRISPRCasFinder
AGCTGCAGAGCATTTCTTCGTGTAAAACTTGCT	TCGAAAGCATACGCTTAGTTTTACGAAGCATT
AGCTGCAGAGCATTTCTTCGTGTAAAACTTGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009284.1\|WP_081947885.1\|5756627_5757797_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|226988
NZ_CP009284.1\|WP_042180261.1\|5748231_5748807_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP009284.1\|WP_042180289.1\|5766114_5766495_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NZ_CP009284.1\|WP_042180271.1\|5752344_5753436_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|340819
NZ_CP009284.1\|WP_042180259.1\|5747481_5748204_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NZ_CP009284.1\|WP_042180263.1\|5748848_5749568_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133055
NZ_CP009284.1\|WP_081947742.1\|5753635_5755180_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP009284.1\|WP_156131193.1\|5762235_5763435_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042180269.1\|5751365_5752352_-\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|367154
NZ_CP009284.1\|WP_081947743.1\|5755464_5756598_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|226988
NZ_CP009284.1\|WP_042180257.1\|5746438_5747485_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP009284.1\|WP_052419317.1\|5763431_5764043_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NZ_CP009284.1\|WP_042180273.1\|5758670_5760107_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_081947744.1\|5758406_5758580_-\|aspartyl-phosphate-phosphatase-Spo0E-family-protein	unknown	unknown	gnl\|CDD\|378175
NZ_CP009284.1\|WP_042180276.1\|5760115_5762023_-\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|293739
NZ_CP009284.1\|WP_042180267.1\|5750529_5751369_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187564
NZ_CP009284.1\|WP_042180265.1\|5749564_5750533_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|366597
NZ_CP009284.1\|WP_042180286.1\|5765248_5766118_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP009284.1\|WP_042180254.1\|5745287_5746358_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP009284.1\|WP_081947745.1\|5764617_5765265_-\|ABC-2-transporter-permease	unknown	unknown	gnl\|CDD\|379133

Protein	Function_ID	Function_description	E-value
NZ_CP009284.1\|WP_081947885.1\|5756627_5757797_-\|glycosyltransferase	gnl\|CDD\|226988	COG4641, COG4641, Uncharacterized protein conserved in bacteria [Function unknown].	8.09418e-30
NZ_CP009284.1\|WP_042180261.1\|5748231_5748807_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.93407e-10
NZ_CP009284.1\|WP_042180289.1\|5766114_5766495_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	1.1121e-32
NZ_CP009284.1\|WP_042180271.1\|5752344_5753436_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|340819	cd03786, GTB_UDP-GlcNAc_2-Epimerase, UDP-N-acetylglucosamine 2-epimerase and similar proteins. Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family (EC 5.1.3.14) are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	2.89478e-121
NZ_CP009284.1\|WP_042180259.1\|5747481_5748204_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	4.99195e-31
NZ_CP009284.1\|WP_042180263.1\|5748848_5749568_-\|glycosyltransferase	gnl\|CDD\|133055	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	4.9123e-39
NZ_CP009284.1\|WP_081947742.1\|5753635_5755180_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	2.33461e-32
NZ_CP009284.1\|WP_042180269.1\|5751365_5752352_-\|polysaccharide-biosynthesis-protein	gnl\|CDD\|367154	pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein. This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein, mannosyl-transferase, and several putative epimerases (e.g. WbiI).	5.08405e-124
NZ_CP009284.1\|WP_081947743.1\|5755464_5756598_-\|glycosyltransferase	gnl\|CDD\|226988	COG4641, COG4641, Uncharacterized protein conserved in bacteria [Function unknown].	2.44494e-30
NZ_CP009284.1\|WP_042180257.1\|5746438_5747485_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	5.63976e-23
NZ_CP009284.1\|WP_052419317.1\|5763431_5764043_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	5.21492e-34
NZ_CP009284.1\|WP_081947745.1\|5764617_5765265_-\|ABC-2-transporter-permease	gnl\|CDD\|379133	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.55602e-11
NZ_CP009284.1\|WP_081947744.1\|5758406_5758580_-\|aspartyl-phosphate-phosphatase-Spo0E-family-protein	gnl\|CDD\|378175	pfam09388, SpoOE-like, Spo0E like sporulation regulatory protein. Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure.	3.67255e-07
NZ_CP009284.1\|WP_042180276.1\|5760115_5762023_-\|LTA-synthase-family-protein	gnl\|CDD\|293739	cd16015, LTA_synthase, Lipoteichoic acid synthase like. Lipoteichoic acid (LTA) is an important cell wall polymer found in Gram-positive bacteria. It may contain long chains of ribitol or glycerol phosphate. LTA synthase catalyzes the reaction to extend the polymer by the repeated addition of glycerolphosphate (GroP) subunits to the end of the growing chain.	4.06829e-90
NZ_CP009284.1\|WP_042180267.1\|5750529_5751369_-\|SDR-family-oxidoreductase	gnl\|CDD\|187564	cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs. dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.64204e-64
NZ_CP009284.1\|WP_042180265.1\|5749564_5750533_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|366597	pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.	7.52786e-44
NZ_CP009284.1\|WP_042180254.1\|5745287_5746358_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	4.03036e-30
NZ_CP009284.1\|WP_042180286.1\|5765248_5766118_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.57733e-74

>NZ_CP009284.1|WP_081947742.1|5753635_5755180_-|glycosyltransferase-family-4-protein
MLRKTLKEVNGCSRPLARERRYTMADKATIVLFSHVSNTRSITGAEKLLLFFARELSCYFNCILVAPQDGKLTQQARRSGLNVQVIPIPLVYGMYTPYAGLEADIRKFQEGREYLELKNWLAALRPAFIISSTCVHVLPALAAKSLGIPVVWKISETITDNEYTGISVELIHRNSDEILAISHTAAACFPQEIRDSKITQLPPSWNDRELLMEAWSTLRGERRRELRVNPGELLIGYISSFINKEKGLEHFVKMAVLVSEQHPEAKYVVIGTPGDKSYYERCVRKVKLEGLTSRFKFYGYEDSLPSAYCAMDLLVVPSLIREGFGMTALEGMAFGKPVVAYDSGGLCEVLQAAGCGGLLAPAADIGALAARVNGLLAEPGLAAAIGSQARERIDAVYGPAAYRARLLGLAERWQLRYCLAPPEPGGASPATPVPQAPGGGEPAARTAPPPAKARRAARLRRAKLRRGRLSRARTRARRGKRPGRKRRAGGSARRKSSRGRKHRGGKARRRGRSR
>NZ_CP009284.1|WP_042180271.1|5752344_5753436_-|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MKIMTILGTRPEIIRLSVIIPLLDKHAERHVLVHTGQNFTASLSGVFFAELGLRAPDYVLQDKQAGLGGQMAAMFGSLEGILLKEQPDRVLLLGDTNSALCAILAERMGIPVVHMEAGNRCYDLKVPEEKNRRVIDAVSTINMPYTQQSKRHLVSEGFPSQRIVLTGNPIHEVITHYQAQIGSSDILSRLTLTSGQYFLVTAHRAENVDDPDALVQIMSGLNLVAEQFGLRLICSIHPRTRSKLTEQFALEMNPLVEFHEPFGFFDFVHLEQHAFCAITDSGTVQEECCLMGVPTVTIRRTTERPETVDCGSNVVSGVEQNSILRSVRLMTSLSPKWEAPEGYLTPDVSAKVVKFLLGGNLHV
>NZ_CP009284.1|WP_042180269.1|5751365_5752352_-|polysaccharide-biosynthesis-protein
MFNNKRIMVTGGTGSWGHELIRQLLPQNPKEIIVFSRSESAQVAMSREYEDNRLSFVIGDIRDKEALIAACRGVDYVFHLAALKHVPVCEDQPYEALKTNVVGTQNVIEAAIANNVEKAIYISTDKAANPSNFYGMTKAIGEKLFVYANLLGSRTRFVTVRGGNVLGTNGSVVHLFMKQIRDKGQVRITDMNMTRFFFTLRDAITLLFKASEVSLGGEIFVMTMPTCRIVDLAEVLIEASGRSDVSVIEAGIRPGEKIHEILMSDFESLTTVVYDEQYLVILPTLDMPELKDHYKSYPHVSFNSFSSENNLMDQEEIKSILIRGGFLQ
>NZ_CP009284.1|WP_042180267.1|5750529_5751369_-|SDR-family-oxidoreductase
MKLLILGGNGMAGHMLAAYFRRQGTHHVFHTTRDKSDLGGLYADADDIAGVEKLVEIVSPHCIINAMGVLNHFAERDRVTAYHVNGFLPHRLRRAADSAGARLIHISTDCVFEGTRGAYTEEDAADGTSVYAITKSLGEVRAPGHLTIRTSIIGPEIRAGGIGLMEWFLAQKGPVSGYKRVMWNGVTTLELAKAVEQMLDSPVSGLIHLAHPQPLSKYELLRHMQQAFDKNDVEIIPESAHVQDRTLVSTRADIHFDLPAYSVMLRELADWMNQSAMYT
>NZ_CP009284.1|WP_042180265.1|5749564_5750533_-|NAD-dependent-epimerase/dehydratase-family-protein
MKARRLLITGAAGFTGAHAVRYFHAAGAEVAAVVRRPAAASPWPEGVRQFTCDLSDRQAVAAMVAEAEPDEVLHLAGRNSVPESWRDPLLYMETNVMATLYLLEALRTRPAGRILVAGSRLKYRPGAASGPPHPYSLSKTLEELVSLAWGTLFKQPVLMAEPCNLIGPGPSTGFCSLLAQHIVRSEAAADGGTEAPPVFRLSSRHALRDFLDVRDAVRAYDYILQHGTEGNIYRIDSGTQRTLGDISGKLLVHARAPVPMDWGPEAPEEVQAIPGGHAGGADTGSGPEVNAAALGWKPELSLEQSLQEIVDYCRSGREGRLS
>NZ_CP009284.1|WP_042180263.1|5748848_5749568_-|glycosyltransferase
MNRPKVSVIIPFYNCPYIEQALQSALSQSWQPYEIIVVDDGSYVHTDRLAPYRHKIHYLGKANGGTATALNHAILHATGDYVAWLSSDDMFYHDKINNQVLFMEQNGLLISYTNFHYINGESHLTEMNASPVFPNQLEYLRCFLHGNPINGCTVMFRRDVFGAIGLFNESLPYTHDYDLWYRAILSGYPPVMLNQSLTAYRRHSGMGTLKHYDVIMAEAAATNARYNGMLRGLIASMGG
>NZ_CP009284.1|WP_042180261.1|5748231_5748807_-|class-I-SAM-dependent-methyltransferase
MYREIQVIDFLPVLLEQLKFSDSILDVGCGTGALLERYEAAVVVGLDIHRPYLLHRKYTSPHIIPIHANASHIDKLFLPNTFSAVTLIDSLEHFSVDEGKELLRKAELIAASRVVVFTPRGFFPQEGTDHFHLQGEYYQRHWSGWEPEDFMKLGYSVTVLKGFHHAENPAFREAFGPDHAPLDALLACKTV
>NZ_CP009284.1|WP_042180259.1|5747481_5748204_-|glycosyltransferase-family-2-protein
MNQSPKVSVVIPLYNCPYVDQAVESVLAQSYPDIELIVVDDGSTLYTEKLAPYRDRILYIRKQNGGTGSALNMGIKAASGNYFAWLSADDRFHPHKIQRQMQELRRTGTLFNHTAYYYINERGERVSEVISVPFADRRELIATMMTGCPVNGSTVLLDMGIFRTVGIFEESFLYTQDYDLWLRILPQFSWSYIEEPLLDYRVHQGMGSVIHNEAQTREIQMVQAKHNGVLTQLLRKEGGP
>NZ_CP009284.1|WP_042180257.1|5746438_5747485_-|glycosyltransferase-family-4-protein
MRLIFPVLTLSRGGAQRMLAELANRLSATGHDVIVLMPAGGTVEYEMHCRVLHSQDTTLTEHDYPYGDIIVSNYYTTVQSAQRASEQGKGIHVRLALCYEPTFLPDNNQSFASYSVTRNLMVLSRWQQEIVRINHGIKGRIVPVGVNGDFHNMHMREVPDRSLVVSAILRKPEGGFSGHREQEYLLQELNTVKELHPEVQIYLITPPGEYADSNFLKAILADNRYHTRTPSNDIELCYHYNESDIFVSSSTFDTGSLPGLEAMRCGAALATVYSGGNLEYGVHGHNCLMSYRFENRLAQDILMLIRDKELRERLARKGENDSWKFTWEKSMQIFQAELFEIVSRQGGA
>NZ_CP009284.1|WP_042180254.1|5745287_5746358_+|glycosyltransferase-family-4-protein
MKVLFTFYVPSGGVETLNRLRCDSLQREGIQCHVLYLMKGSSQQNQINFPVFIASGDEEIRSLLEAERYDAIIVTSDYLLMERLRRLGYGGILIYESQGLGRREDAKDMIIEAVPYLRSYCNAVLIPPTDHLLELFITICPWLHRYIIPNIVDIQSFRFIPGEKPHDPVIAWVGRLENNKNWREYLQIAKEIRAYKPDLHLWMFHDPGLASEEQTQLFNEELQRLGLNDRLIAFSNIPNHVMPVYFSSIAASGGFLLSTSITEGFGYAVAEAICCTCPVLSTDSDGVRSFIVHNYSGKFYPLGNIGVAVQEGLELMNNIELRDSIRIQGRNHMVDRFGSERYAQSFREMLNSFSIF
>NZ_CP009284.1|WP_081947743.1|5755464_5756598_-|glycosyltransferase
MNNEFIMPAPPLPRTPAEEEKLRGRLTGFKTGYDEGYLRGRLAILDGRPEEPIPVRNLHVLYVASGKGYPYSPLDDAVLFALQRLTAQVTVSDVRQNLAELAAVQRPDLVLVLDGMELPLEQISMLRGRGIKTAIWLTDDPYYTDFTMKIVAHYDYVFTLERNCVEVYRGLGCPEVHYLPFAAHREHYRPTTGRSPIQRDVSFIGSAYWNRINFFRDIMPELMSYNTVINGIWWDRLPEAPLYGDRIEIGKWMSPQETSVTYSGSKIVINLHRAHVDEKDNNNALLIPAASPNPRTFEIAAAGTLQLSDARDDMGTFYKVGEEIDTFSSPQEMMDKIRYYLTHEEERRNMALRAFERTLKDHTYTRRLHQLLTVIYG
>NZ_CP009284.1|WP_081947885.1|5756627_5757797_-|glycosyltransferase
MADVHEADADSAYSTTVLRIQRGRVKAVKAKKRRTRPRDYRDGYQEGYRLGLCEAVKRLNSPEVEACRPFKLMYVPQGFEAIDTGITEALKLLVSEVVISSPESMLEVAAREQPGAVLVMNGLHVFPANHLEQIDEIRNLGIATAIWFADDPYFTEDTSVICLHYDHVFTHELGCVEFYRSLGAGSVHYLPLCVNPQMFYPRRTGPQYDFDIVFIGNAFRNRTALFDELAPFLKGKKVLIAGGFWERLSQFDELSPFIRSGFIPPEETANYYSGAKLVINIHRPWEGGLDNRNTFQLPSRSINPRTYEISACGTMQLTDIREDLGSYYRPGHDLETFASADELKRKIEYYLKHEHERRKFALRGLQTTLRRHTFTARLPELLNVLTSQM
>NZ_CP009284.1|WP_081947744.1|5758406_5758580_-|aspartyl-phosphate-phosphatase-Spo0E-family-protein
MDNDEHRDRIEQARQELNRLALEYGVQDVRVLRQSVKLDALLNEYTGCLTDKDDMPY
>NZ_CP009284.1|WP_042180273.1|5758670_5760107_-|hypothetical-protein
MKRLLKPQVLVTLAGGGLILYLLFLQPFVGVADNGDFLRMMNTIGLNYYDAAESYADRFFSFSHSQFAYDNLFRGFYPSSQILLVLVPRLLAGLVHGSYFDIRVLGAVYAVLLLAATWLIVKLGNKHSAVMGLLLGAGVLFVFYDIGYLAYFNSLFGEPVSMVFMLLTFVLGLRLTMQDHPTPKGLTLFFIAVLFLVCSKIQNAPVGLAFMLIFWRMGSLKGEGNFRKLARRFAVAVAIVSVVLYVTAPKELKHINLYQTVFFGILNESPDVRGDLRDLGLPERLEVLAGTNYFQGDTAIKQDDPSLTPDFYDRISHKDVLFFYLKHPSRLIDNMEYAAQNSMSIRPYYLGSYEKSLGKPAGAVAFTYSGWSEFKNKHLPDSLWFLSLFYLAYYAGVLIHYFRAKERRERVAGELLMLLGLIGLFSFLVPILGDGRADIGKHLFLFNVSFDMMAVVMLGGIVRIVAGFLSRKHGTLGN
>NZ_CP009284.1|WP_042180276.1|5760115_5762023_-|LTA-synthase-family-protein
MYKQNTGLLPVQFYVVAGLVWLKLLLLRVLFFERIAWEWIVMDLAPVLLIMGILTVLLPRRMKKGAYWSFNVILSLLLFAASVYFNHFGSVPTYLAFYELNQVFQVKESVESTIQPVDYLFFADLALMAVYAGLRRWQRGPAYPGRSYSGGTRPAYSRTQLAVIWVAIIGGGSLSAYSVHAAGGITNELVQAESAGFLNYEVVAALKAQEDNRLIGTGDIHETVAKVNTLEASYPYSSMPAGTVPDYFGSQKGKNVIVIQLEAFQNFPLHQSLDGQELTPVLNKLAGEGFYFPQVYQQIGPGNTSDAEFMSNTSIYPIGTLAMSTGFSDRELPSLPRLLRTKGYEAYTFHVNKAGFWNRNELYPALGFNGYYDKDDFVNDHFNSFGASDEQLYITAVEELTQLQKKGTPFYAQLVTVSSHHPFKIPEHFKKITMPDTLEGTMLGDYLTAINYTDYAVGTLIEGLKQQGLWDNTVLVLYGDHFGLQPQDVPPEQVEEALGIPYHPRISRFNIPLIVHVPGMTEGSTVERTGGQLDIVPTVANLLGLNLKDEGFTAFGHDLLNIDRNVIGMRYYMPSGSFFNDEIMFVPGKSFADGEAVSLDTLQPVADHSKYEDDYNYILQLMGLSDEYVKLLPQR
>NZ_CP009284.1|WP_156131193.1|5762235_5763435_-|hypothetical-protein
MMDEREPQWYEQARKGPFEEARFTDSSAERVMRRLRAEAEPAPTRSRRMPRAAVMAALILLLLAGAFYLKNGPLGRETPAGVKAPVEEQVKPTDEALKKTAERLMLEQLGQQLPFEKLDRMKMPGQAELIYRENELSDSYAFFWIDAETGEAAAFSMEASVEADDIDKTLINEAGQKLQKLGYTGEFQATGITRYVSYGRTADKTVQVINVVHAGDADINFTNGVYVRASFNVNQKEVSEELKQAGLEALGMLRSSSLADQLTRVVRSTTEGAGDEITLYYGDGRGGDTFVTFDYATRAILDVADYALNLVDLGDSRNDEERGEQLLDMDNAILQSTAAAIADKLYGIRLVEDYMIVKNGSRPGVVTFESRSGAPAIEASYNLDGVMYSFSVKRETNSL
>NZ_CP009284.1|WP_052419317.1|5763431_5764043_-|RNA-polymerase-sigma-factor
MVRSNDGQRTELEDKLKSAEAMDEDQLRQIMSLYGNDIWNYIYYLTKNTEQAEDLTQEVFIKCFYRIGTYKGTSSLKAWLLTIARNTVFSYRKSRFFRTGLWGGVQNITPAAREHEGTEPEGEPLFGTVRSAEMEYMGNQQIRDIWSLIMKLPDKLREVLVLDLKTGLSIHEIAALTELPPGTVKSRLHRARRKIQNKLRGLQ
>NZ_CP009284.1|WP_081947745.1|5764617_5765265_-|ABC-2-transporter-permease
MICVYNSFHLIRKDLIIVQKFILLLIPYYMVMGFTNFDNYTVFALLPAMLLLINTCTMDVQQNNQKFLVSLPVPRQQIVLAKYLAMLPYSVLSFACTVLLYVIAFSVGRTTEPLAWRELLLCIAGFPLLASFYLPLHYWLGRKGTQVVNMVFIILVMVNFAAIKQLMEWFPGLAEWVSSGRADSLLLPVIAVLGYVLVLFCSYLISLRVFTSKDI
>NZ_CP009284.1|WP_042180286.1|5765248_5766118_-|ABC-transporter-ATP-binding-protein
MSDCIRLEHVHKSYGSFAVQDISLGIKEGYITGLIGPNGAGKTTLIQMIMGMVHPDRGDVRLFGGQNKEQEPAVKERIGYVSDENIYYEQLTVKQMKKVIAPFYSRWNEDTYVKYQELFKLSPGKKIKDLSKGMKIKFSLAIALSHGADLLIMDEPTSGLDPVFRRELLDLLTEHIQDEKKSILFSTHNTTDLDRIADYIVFVNDGRIVFGEMKEALAEKYLLVKGGKELLDRDTRRLFLGIRESAHGFEGLMGNRAEGERYFKDTAICETPTLEEIMYFSVKGSDLRV
>NZ_CP009284.1|WP_042180289.1|5766114_5766495_-|GntR-family-transcriptional-regulator
MNILISSTSGEPIYAQIVTQVRQLILQGELGAGTPLPSIRQLAKELQISVITTKRAYEELEREGLINSIVGKGSFVSGADQEFIKEQRLRILELKLKEVIEESRQLGLSYGELTEMLKLIYEEEQE

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Crispr_ID: NZ_CP009284_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009284_16

5833374-5833462

Orphan

Consensus_repeat	Method
CGGAGCCTATGCTTCGTAAAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009284_16

>merge|NZ_CP009284|16|5833374-5833462|CRISPRCasFinder
CGGAGCCTATGCTTCGTAAAACTGAGCGTATGCTTTCGGAGCAAGTTTTACACGCAGTGTATTCAACGGAGCCTATGCTTCGTAAAACT

>NZ_CP009284|16|15|5833374-5833462|CRISPRCasFinder
CGGAGCCTATGCTTCGTAAAACT	GAGCGTATGCTTTCGGAGCAAGTTTTACACGCAGTGTATTCAA
CGGAGCCTATGCTTCGTAAAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009284.1\|WP_042180415.1\|5830993_5832541_-\|helicase-DnaB	unknown	unknown	gnl\|CDD\|226138
NZ_CP009284.1\|WP_076112513.1\|5837335_5837479_-\|sporulation-histidine-kinase-inhibitor-Sda	unknown	unknown	gnl\|CDD\|370219
NZ_CP009284.1\|WP_042180422.1\|5834451_5834703_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042180426.1\|5837805_5838468_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373047
NZ_CP009284.1\|WP_042180434.1\|5839527_5840505_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP009284.1\|WP_042180424.1\|5834704_5835898_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NZ_CP009284.1\|WP_042180410.1\|5830018_5830975_-\|primosomal-protein-DnaI	unknown	unknown	gnl\|CDD\|236353
NZ_CP009284.1\|WP_042180400.1\|5824961_5826686_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP009284.1\|WP_042180395.1\|5822526_5823273_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP009284.1\|WP_042180397.1\|5823269_5824838_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042180393.1\|5822144_5822534_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NZ_CP009284.1\|WP_042180420.1\|5833478_5834237_+\|heme-dependent-peroxidase	unknown	unknown	gnl\|CDD\|237033
NZ_CP009284.1\|WP_038596102.1\|5829119_5829437_-\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_CP009284.1\|WP_042180431.1\|5839152_5839362_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042180417.1\|5832805_5833102_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379451
NZ_CP009284.1\|WP_156131196.1\|5829784_5829943_+\|YqzM-family-protein	unknown	unknown	unknown
NZ_CP009284.1\|WP_042183225.1\|5836225_5837200_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223566
NZ_CP009284.1\|WP_042180428.1\|5838708_5839050_+\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|377540
NZ_CP009284.1\|WP_042180403.1\|5827036_5829004_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP009284.1\|WP_042180437.1\|5841232_5841592_-\|iron-sulfur-cluster-assembly-accessory-protein	unknown	unknown	gnl\|CDD\|223393

Protein	Function_ID	Function_description	E-value
NZ_CP009284.1\|WP_042180415.1\|5830993_5832541_-\|helicase-DnaB	gnl\|CDD\|226138	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair].	1.17387e-22
NZ_CP009284.1\|WP_042180434.1\|5839527_5840505_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	6.44745e-61
NZ_CP009284.1\|WP_042180424.1\|5834704_5835898_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	1.34567e-134
NZ_CP009284.1\|WP_042180410.1\|5830018_5830975_-\|primosomal-protein-DnaI	gnl\|CDD\|236353	PRK08939, PRK08939, primosomal protein DnaI; Reviewed.	8.63795e-82
NZ_CP009284.1\|WP_042180400.1\|5824961_5826686_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.6123e-09
NZ_CP009284.1\|WP_042180395.1\|5822526_5823273_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	7.43612e-54
NZ_CP009284.1\|WP_076112513.1\|5837335_5837479_-\|sporulation-histidine-kinase-inhibitor-Sda	gnl\|CDD\|370219	pfam08970, Sda, Sporulation inhibitor A. Members of this protein family contain two antiparallel alpha helices that are linked by a highly structured inter-helix loop to form a helical hairpin; the structure is stabilized by numerous hydrophobic and electrostatic interactions. These sporulation inhibitors are antikinases that bind to the histidine kinase KinA phosphotransfer domain and act as a molecular barricade that inhibit productive interaction between the ATP binding site and the phosphorylatable KinA His residue. This results in the inhibition of sporulation (by preventing phosphorylation of spo0A).	4.36232e-08
NZ_CP009284.1\|WP_042180393.1\|5822144_5822534_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	3.83354e-32
NZ_CP009284.1\|WP_042180426.1\|5837805_5838468_-\|hypothetical-protein	gnl\|CDD\|373047	pfam14398, ATPgrasp_YheCD, YheC/D like ATP-grasp. A member of the ATP-grasp fold predicted to be involved in the modification/biosynthesis of spore-wall and capsular proteins.	1.13122e-60
NZ_CP009284.1\|WP_038596102.1\|5829119_5829437_-\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	3.29601e-49
NZ_CP009284.1\|WP_042180417.1\|5832805_5833102_-\|hypothetical-protein	gnl\|CDD\|379451	pfam14068, YuiB, Putative membrane protein. This family of bacterial proteins is functionally uncharacterized. Proteins in this family are approximately 100 amino acids in length. There is a conserved FGIGF sequence motif, and many members are putative membrane proteins.	1.11158e-28
NZ_CP009284.1\|WP_042180420.1\|5833478_5834237_+\|heme-dependent-peroxidase	gnl\|CDD\|237033	PRK12276, PRK12276, putative heme peroxidase; Provisional.	1.47604e-159
NZ_CP009284.1\|WP_042183225.1\|5836225_5837200_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	3.78275e-90
NZ_CP009284.1\|WP_042180428.1\|5838708_5839050_+\|DUF805-domain-containing-protein	gnl\|CDD\|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	3.1605e-27
NZ_CP009284.1\|WP_042180403.1\|5827036_5829004_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP009284.1\|WP_042180437.1\|5841232_5841592_-\|iron-sulfur-cluster-assembly-accessory-protein	gnl\|CDD\|223393	COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones].	1.72932e-43

>NZ_CP009284.1|WP_042180417.1|5832805_5833102_-|hypothetical-protein
MGFIPVFVLAVLFFVMMFGIGFILNMLMKTTWFPAYLFVIIILPVVVYSIWDRNAMSLWEHLGSFHIVDYLTGIAGLTGAVLSGWTIQKLRLGGYKMF
>NZ_CP009284.1|WP_042180415.1|5830993_5832541_-|helicase-DnaB
MRMSNLHHFTEHHRYCVSREFGLSHVDSRMLGSVYQPMVGAFAISLYRLLFEHIPAESIGYSAVEQQRRLFMTLGVEPNEKGRKYLVDQASRLEAVGLLATCRIYMPENDDYMYEYELLPPLSPADFFATQHLTLLLRDKIGKFAVLSLREQFWNREPEEWSRRSIGKENISLPFYDIFQLNTHVIDYELEQALAEVATVKQPGFSESSEPAIGYSDIILRFPRESVNRMHVEKLRFDHTQMGVINYVARKYELGPQDLCRLLDEDGMFTPDGEVILDTLQHSASQHFRQDMKRQEKREIAASKVVSLRAAASGDPEDQVIQQEQPVEMEYYVEVPPQFLTKCDIHQYNMMLRNEPYTRLLQTFFPGAVPGQLMDIFEKIDLNYKLSAEVINVLIHYLMTMVASGGDQRMNRNFVEAIASNMLVKQVNTYEKAVRYIRDQSKVKGKGAASGTAGAASGTRQRTYNKGGSRAAKPEIPIVLDDGSAGTVSEEEFAAMMKKAAEIKANKKKGALRTP
>NZ_CP009284.1|WP_042180410.1|5830018_5830975_-|primosomal-protein-DnaI
MESMSEVLRSMNNPALRQRSRDLEQNLLGNPLVQQLKAEHPELDDQRLKLHLSQLFQYVRESRNCANCPGLENCPNDFQGHYSKLTVESVNGSPDLFERKTACSLKIAQDNQDSIRRRIRSFYVDERVLNGGYDEMDIMGKDPRRASAVNKVFDYITGVKEDGLTPQGIFLHGTFGTGKTFLMCYLLHELAVAGYTGVIVYMPDFIEDLKSIMLDGQKLKETVDTLKNCDLLIFDDIGAENLNPWARDHVLGAILNYRMNRKPTFYTSNYPLEGLEKHLSFTSKDGEELHKGQRLMDRIAPFVEVIPLHGENQRGRSR
>NZ_CP009284.1|WP_156131196.1|5829784_5829943_+|YqzM-family-protein
MEINAKIRDPREHVNEEPRNDLGDLMTGFAGMAGFMTLVFFGMVIVKFVFLD
>NZ_CP009284.1|WP_038596102.1|5829119_5829437_-|thioredoxin
MAIVNVSDQSFVGEVEGQGTVVVDFWAPWCGPCKMLAPILEELSTELGDSVKIAKLNVDENPETASRFGVMSIPTLIFFKDGQPVDKVVGLNSKDSLKNIVAKHQ
>NZ_CP009284.1|WP_042180403.1|5827036_5829004_-|excinuclease-ABC-subunit-UvrC
MDYNDNIRNKLALLPDLPGCYLMKNEEGTIIYVGKAKVLKNRVRSYFTGSHNGKTQRLVANIVDFEYIVTSSNMEALILECNLIKKHMPRYNVLLKDDKTFPYLKITNEAHPRLEVTRRVLKDKAKYFGPYPNSYAAQQTKKLLDRMYPLRKCGVMPKEVCLYYHMGQCLAPCEKEVLKPAYDEIIRDISAFLSGGHEAVKKDLQKKMQEAAEELYFERAKELRDQIMHIDALMEKQKINTADTKDRDVFGYAVDKGWMCVQILYMRQGKMIQRHSSAFPFYGEAYSDFMSYVTQYYSDNPALPQEILLPEEVSEGTEKPSGASAAAAVTAGRLAAELDAEDDGEPEAESEAASAVAVEAASGAAALQEWLGLKVLVPQRGLKKQMVGMACQNSRVALDEKFRLIERDEERTSGAAFSLGQSLGLESLNRIEAFDNSNIQGTNPVSAMVVFIDGKPARKEYRKYKVRTVQGPDDYETMREVIRRRYERVLKEDLPQPDLIVVDGGKGQISSAIDILQNELGLYIPVCGLVKDDKHKTAQLLIGDSAEPVPLARDSQEFYLLQRIQDEVHRFAITFHREQRGKSMVTSKLDSIPGIGEKRRKVLLKHFGSLKKIKEASLEDFRVLSIGEKLAGQILAALNDEEPAAQADTDSEDEQ
>NZ_CP009284.1|WP_042180400.1|5824961_5826686_+|CPBP-family-intramembrane-metalloprotease
MNPVGQPLQQRPLSKRLILAGIFGLIVFLMFQVAPQLLAGGAATAISKTEARDKAAAFAAEHLGYAQSDQDRWTVSYQTDSSFYGYMSREKLLQSYNDNKLDQRYPFDVYHAVLYTAGAADPLLAVDLNMYTGEVTAFARNGYARASDGWDYGNPPVPGNSRGIYLEGSENGGLSLQQKETLASPWLKLWGASPARLQIEANTDGYGLVYTDSSLKIGESSLQYQFNFLNGTLSYFRAGFSAPSWHDTYVENQTSLANRLTLLGYALPTLALGLLALIFSILRRSHTSFVRGITLSSIHFTIMMISTYNMLPESAVDTAESRITAVIMFIIYALYSLLMSSLLYFSLVGGDGLWRKEEGLNPWPRANEPGYGRYVLDSLRAGYVWAFILLGVQTVMFIILSFTLDNWSTTDASQSPYNMRYALLLPVVAWLAGLSEEAVYRLFGIRMLKKLVKNTFIASLITTAIWAFGHTLYPIYPVISRPIELTVIGLLFSYIFLRYGFIAVMFAHVVFDSILIGMTLIFMQESVNIAAGVITIVLPFLVGYIVYRFNPPDSTNRKDPQGPDEPLRPAGWLS
>NZ_CP009284.1|WP_042180397.1|5823269_5824838_+|hypothetical-protein
MNIMKTLINLEYSRYDLSRRGKHYSLFAALTIIFLLFITGLNLKGTHVSERAPFIYASMLLWSVVTILSAVHMVTFKSLSHRDWILSFPHSRLKLLYAQLFSLLRHSLNITLAVLAAAGILYYYSVRAGWYQPLTASGLLYLFSANTLFILAFLPLAVTFGLGVSLFLRSRPGALLLFPYLMMWMFPFIAESALGSANQDFYTSAASSPGRVLLAALVLCLAGWPLCHLLMKLIAAKGMNAAAASDRLSAARTASVRPGFRTLRMKSGSGSAGRLAPYLLLYRLHISRVHRIEKHLAIRILKLIVPLLIAAVVYLGFALEEEVVILDFIKPLFALLVMLGSIWMPLRTGIERKQLPWLLGFPQSRLALLLSGVAVVWTTVMRALSALMLSACAGSVTALLAGRTGIEEWSHSISWVLYSFLLSALALTVILCLLQIEYCTLKLKVLNIVMIPVAMLGPLHSFLLNRFMYSGLHSGASPDFRLLGLTALIALPVALCCIPAGAAYYHMSLIQPAGKKTRSKQA
>NZ_CP009284.1|WP_042180395.1|5822526_5823273_+|ABC-transporter-ATP-binding-protein
MSEYNLDNSNSGIGVSAEPAAVECIGLGLTLRKKSVLHDVTFDIPRGSLTGLLGPNGAGKSSLLRIIAGLADPDSGSVKIFGKPAGAERLGELSLLPDRSSLPGWLSVREWLDFAAGIYPDWDPAKAQELQVKLSVSTEAVISSLSRGEEARLQLLTCLSRKAPLIILDEPFTGVDLISRERIASAVVGELADGARTFLIATHDIREMELLFDRLILIGGGTIRSIDEVDALRRSGKSVESHYREVFA
>NZ_CP009284.1|WP_042180393.1|5822144_5822534_+|GntR-family-transcriptional-regulator
MDQPFELLPEPFQINPSLPIYEQFVEAIEGRIVSGQIPPGSRLPSVRELAAGRGVNPTTIARTYQELERVGLIVTYRGQGTFVTRDETAIGGARKVMMRRAIQDFKAAAGKLGITAEQLLEFDKEDSNE
>NZ_CP009284.1|WP_042180420.1|5833478_5834237_+|heme-dependent-peroxidase
MNEAALTLEGWYALHDFRSINWTAWTAADDEERAVALEELHAFMEEWGPVEEAKEGSTAVYAIVGQKADFVMMFLRESLEALNALETAFNKIAFAQYTTKSYSYVSIVELSNYAAGGSAGDGSDPMQNPHVAARLKPVLPQAKHICFYPMNKKRELADNWYMLDMDKRRELMHSHGLIGRGYAGKVKQIITGSVGFDDWEWGVTLFAEDALQFKKLVYEMRFDEVSARYGEFGPFYVGNLLTTESFEELLKL
>NZ_CP009284.1|WP_042180422.1|5834451_5834703_-|hypothetical-protein
MRHCSVQVRGLLTRDELDRYNALIEVGSYLEDQSRYDLAYPVQKEIDLLILPAIERLKDKSRARDKATAEYLESLNGEDEEEE
>NZ_CP009284.1|WP_042180424.1|5834704_5835898_-|NAD(P)/FAD-dependent-oxidoreductase
MSSIPKIVILGAGYGGILTAQRLQKALNYNEADVTLVNRHEYHYFTTHLHMPAAGTDSIEHTRVSISKLIDEFKIDLVKSSVQEIRTQQKKVILEDGTLSYDYLVIALGGEPETFGIPGLDKYALTIRSINSVRLIREHIEYQFAKYKNENNAQEHINFVVGGAGFSGIEFVAELADRIPALCKEYDVDPSLVNIYNVEAAPTALPGFAPELVEHAMAVLTKKGVTFKIGVAIKECLPGGVILATGEEIKASTIVWTGGIRGNRLIEAAGFEAMRGRVKVDEYLRVPGHENIFIIGDGSLMINPEGRPYPPTAQIAMQQGECCAHNLVAAIRSQQPKKFVFSNKGTVASLGKGQGIAVVGEKTYKGWTAAQLKKVVDMRYLFIIGGIPLVLKKGRFF
>NZ_CP009284.1|WP_042183225.1|5836225_5837200_+|NAD(P)/FAD-dependent-oxidoreductase
MSDLLIIGGGPAGMFAAFYGGMRQASVTLIESMPQLGGQLAALYPEKYIYDVAGFPKITAQELVDNLSRQMDLFQSNICLEEKVVSVEKRDERHFVTTTDKAEYHSKAVIITAGVGAFEPRRLELPEAPRFEKANLHYFVSDLNAFQGKKVLISGGGDSAVDWALMLEPIAEEVTLIHRRDKFRAHEHSVEQLMASKVNVITPSEITELHGEEFITKVTLSHIKTKETQEIEVDSVIVNFGFVSSLGPIAQWGIEIESNSIVVDSRMETSIPGIFAAGDITTYPGKLKLIAVGFGEAPTAVNNAKVYLDPDAKLSPGHSSNLKL
>NZ_CP009284.1|WP_076112513.1|5837335_5837479_-|sporulation-histidine-kinase-inhibitor-Sda
MVELSDEMLLDSYQRAIELQLEHDFIALLLAEIRKRNLHSPVHAVLH
>NZ_CP009284.1|WP_042180426.1|5837805_5838468_-|hypothetical-protein
MAGRQLASKWLKTEALLSDSRVAGYIPRTKGYNAAGLSAMLGRYGNVVIKPIVGGGGHGVIKVFRDSRGYGFTYNHHTRMYRDFGSMKHALDRVKLRRRYMIQQGISLARIAGRPIDYRVKVVKNGEHWEFRSMVGRLARPGLFVTNLCKGGTMMTCRHGLRRSLPGISASAKKAEMRRLTHVCIELLERHFPGIGELGFDYAVDHRGKIWILEVNTRPK
>NZ_CP009284.1|WP_042180428.1|5838708_5839050_+|DUF805-domain-containing-protein
MEWYLKAIKNYFNFTGRARRTEFWMFAVINFLIGFLLVFIEAVFEPAPIIRSVYYWFILIPSWAVLVRRLHDSGRTGLWILLAFIPYFGYLILFFLACMDSEGNNKYGPSPKY
>NZ_CP009284.1|WP_042180431.1|5839152_5839362_+|hypothetical-protein
MAQLFEVLYWFAMIGMSVVLAGTTILVCALGFRFIRDRRPFLGAGCIAFSLAAAALIIFMVHYKFIVPA
>NZ_CP009284.1|WP_042180434.1|5839527_5840505_+|Gfo/Idh/MocA-family-oxidoreductase
MNTQINWGIIGCGDVTEVKSGPALQKAEGSQLAAVMRRNGELAADYARRHGVPRWYSGAPELITDPGVDAVYIATPPSTHMEYTLAAAKAGKPVYVEKPMGLNTAECETMLAACEQAGVPLYVAYYRRALPRFRKIKEWLDANAIGELRFVRTMHMTKPLEAADGHNWRVDPAISGGGLFLDVGSHTLDLLDCLLGPITDAAGHASNLGSSYAPEDTVSGRYRFESGVHGTGIWCFNAYTNEDVTEIVGSLGGITFSTFADRPVILRTANGEQPEFIPHPAHIQQPLIQSITDELLGRGTALSTGLTAIRTSRVMDELVSNYKGR
>NZ_CP009284.1|WP_042180437.1|5841232_5841592_-|iron-sulfur-cluster-assembly-accessory-protein
MISISETAAGQLKTMLADQEVPNMFLRLGVTAGGCSGFSYAMGFDDNETEQDVYMDVEGLKVVVSKDDIRYLNGLEIDFEESGMTGGFTIHNPNASVTCGCGSSFRTKEEAGNPAAEPC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP009284_7	7.1\|3517875\|28\|NZ_CP009284\|CRISPRCasFinder	3517875-3517902	28	NZ_CP009284.1	4850652-4850679	0	1.0
NZ_CP009284_7	7.1\|3517875\|28\|NZ_CP009284\|CRISPRCasFinder	3517875-3517902	28	NZ_CP009284.1	2166492-2166519	0	1.0
NZ_CP009284_7	7.1\|3517875\|28\|NZ_CP009284\|CRISPRCasFinder	3517875-3517902	28	NZ_CP009284.1	4850600-4850627	1	0.964
NZ_CP009284_7	7.1\|3517875\|28\|NZ_CP009284\|CRISPRCasFinder	3517875-3517902	28	NZ_CP009284.1	3602445-3602472	2	0.929
NZ_CP009284_7	7.1\|3517875\|28\|NZ_CP009284\|CRISPRCasFinder	3517875-3517902	28	NZ_CP009284.1	3602497-3602524	2	0.929
NZ_CP009284_11	11.1\|5092510\|19\|NZ_CP009284\|CRT	5092510-5092528	19	NZ_CP009284.1	4032823-4032841	2	0.895
NZ_CP009284_13	13.1\|5659337\|36\|NZ_CP009284\|CRISPRCasFinder	5659337-5659372	36	NZ_CP009284.1	5659209-5659244	2	0.944

1. spacer 7.1|3517875|28|NZ_CP009284|CRISPRCasFinder matches to position: 4850652-4850679, mismatch: 0, identity: 1.0

tggccagtttacccttatggtggcagaa	CRISPR spacer
tggccagtttacccttatggtggcagaa	Protospacer
****************************

2. spacer 7.1|3517875|28|NZ_CP009284|CRISPRCasFinder matches to position: 2166492-2166519, mismatch: 0, identity: 1.0

tggccagtttacccttatggtggcagaa	CRISPR spacer
tggccagtttacccttatggtggcagaa	Protospacer
****************************

3. spacer 7.1|3517875|28|NZ_CP009284|CRISPRCasFinder matches to position: 4850600-4850627, mismatch: 1, identity: 0.964

tggccagtttacccttatggtggcagaa	CRISPR spacer
tggccagtttgcccttatggtggcagaa	Protospacer
**********.*****************

4. spacer 7.1|3517875|28|NZ_CP009284|CRISPRCasFinder matches to position: 3602445-3602472, mismatch: 2, identity: 0.929

tggccagtttacccttatggtggcagaa	CRISPR spacer
tggccagtttgccctcatggtggcagaa	Protospacer
**********.****.************

5. spacer 7.1|3517875|28|NZ_CP009284|CRISPRCasFinder matches to position: 3602497-3602524, mismatch: 2, identity: 0.929

tggccagtttacccttatggtggcagaa	CRISPR spacer
tggccagtttgccctcatggtggcagaa	Protospacer
**********.****.************

6. spacer 11.1|5092510|19|NZ_CP009284|CRT matches to position: 4032823-4032841, mismatch: 2, identity: 0.895

gtggaggaggcgatttaat	CRISPR spacer
gtggaggaggcgctgtaat	Protospacer
************ * ****

7. spacer 13.1|5659337|36|NZ_CP009284|CRISPRCasFinder matches to position: 5659209-5659244, mismatch: 2, identity: 0.944

atccatcttcggtaaaactcacttcggaagcataca	CRISPR spacer
atccatcttcggtaagactcacttcggaagcatgca	Protospacer
***************.*****************.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009284_6	6.1\|2906442\|28\|NZ_CP009284\|CRISPRCasFinder	2906442-2906469	28	NZ_CP041074	Bacillus tropicus strain LM1212-W3 plasmid p1, complete sequence	48127-48154	6	0.786
NZ_CP009284_6	6.1\|2906442\|28\|NZ_CP009284\|CRISPRCasFinder	2906442-2906469	28	NZ_CP024774	Bacillus thuringiensis LM1212 plasmid pLM3, complete sequence	21595-21622	6	0.786
NZ_CP009284_5	5.2\|2663724\|29\|NZ_CP009284\|CRISPRCasFinder	2663724-2663752	29	NZ_CP017941	Phyllobacterium zundukense strain Tri-48 plasmid unnamed1, complete sequence	61965-61993	7	0.759
NZ_CP009284_5	5.2\|2663724\|29\|NZ_CP009284\|CRISPRCasFinder	2663724-2663752	29	NZ_CP005192	Sphingobium sp. MI1205 plasmid pMI3, complete sequence	33240-33268	7	0.759
NZ_CP009284_5	5.2\|2663724\|29\|NZ_CP009284\|CRISPRCasFinder	2663724-2663752	29	NZ_CP005193	Sphingobium sp. MI1205 plasmid pMI4, complete sequence	16158-16186	7	0.759
NZ_CP009284_5	5.2\|2663724\|29\|NZ_CP009284\|CRISPRCasFinder	2663724-2663752	29	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	331114-331142	7	0.759
NZ_CP009284_5	5.2\|2663724\|29\|NZ_CP009284\|CRISPRCasFinder	2663724-2663752	29	NZ_CP022424	Vitreoscilla filiformis strain ATCC 15551 plasmid pVF1, complete sequence	200488-200516	7	0.759
NZ_CP009284_5	5.2\|2663724\|29\|NZ_CP009284\|CRISPRCasFinder	2663724-2663752	29	NC_020563	Sphingomonas sp. MM-1 plasmid pISP4, complete sequence	31022-31050	7	0.759
NZ_CP009284_5	5.2\|2663724\|29\|NZ_CP009284\|CRISPRCasFinder	2663724-2663752	29	NZ_CP005087	Sphingobium sp. TKS plasmid pTK3, complete sequence	29093-29121	7	0.759
NZ_CP009284_5	5.2\|2663724\|29\|NZ_CP009284\|CRISPRCasFinder	2663724-2663752	29	NC_020562	Sphingomonas sp. MM-1 plasmid pISP1, complete sequence	161622-161650	7	0.759
NZ_CP009284_5	5.2\|2663724\|29\|NZ_CP009284\|CRISPRCasFinder	2663724-2663752	29	NC_008697	Nocardioides sp. JS614 plasmid pNOCA01, complete sequence	34575-34603	7	0.759
NZ_CP009284_5	5.2\|2663724\|29\|NZ_CP009284\|CRISPRCasFinder	2663724-2663752	29	NZ_CP029540	Aquitalea sp. USM4 plasmid unnamed, complete sequence	46899-46927	7	0.759
NZ_CP009284_7	7.1\|3517875\|28\|NZ_CP009284\|CRISPRCasFinder	3517875-3517902	28	MG748548	Escherichia phage EP335, complete genome	9632-9659	7	0.75
NZ_CP009284_7	7.1\|3517875\|28\|NZ_CP009284\|CRISPRCasFinder	3517875-3517902	28	NC_023593	Escherichia phage KBNP1711, complete genome	9723-9750	7	0.75
NZ_CP009284_2	2.1\|136275\|58\|NZ_CP009284\|CRISPRCasFinder	136275-136332	58	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1553592-1553649	8	0.862
NZ_CP009284_2	2.1\|136275\|58\|NZ_CP009284\|CRISPRCasFinder	136275-136332	58	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	2547776-2547833	8	0.862
NZ_CP009284_2	2.1\|136275\|58\|NZ_CP009284\|CRISPRCasFinder	136275-136332	58	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1583788-1583845	9	0.845
NZ_CP009284_2	2.1\|136275\|58\|NZ_CP009284\|CRISPRCasFinder	136275-136332	58	NZ_CP016544	Planococcus donghaensis strain DSM 22276 plasmid pPD76, complete sequence	7380-7437	9	0.845
NZ_CP009284_2	2.1\|136275\|58\|NZ_CP009284\|CRISPRCasFinder	136275-136332	58	NZ_CP033045	Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence	484370-484427	9	0.845
NZ_CP009284_2	2.1\|136275\|58\|NZ_CP009284\|CRISPRCasFinder	136275-136332	58	NZ_CP033045	Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence	485380-485437	9	0.845
NZ_CP009284_2	2.1\|136275\|58\|NZ_CP009284\|CRISPRCasFinder	136275-136332	58	CP031730	Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence	312640-312697	10	0.828
NZ_CP009284_2	2.1\|136275\|58\|NZ_CP009284\|CRISPRCasFinder	136275-136332	58	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	900668-900725	11	0.81

1. spacer 6.1|2906442|28|NZ_CP009284|CRISPRCasFinder matches to NZ_CP041074 (Bacillus tropicus strain LM1212-W3 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.786

cactcgaaatgttgataaatggcagaaa	CRISPR spacer
gcgtagaaacattgataaatggcagaaa	Protospacer
   * ****..*****************

2. spacer 6.1|2906442|28|NZ_CP009284|CRISPRCasFinder matches to NZ_CP024774 (Bacillus thuringiensis LM1212 plasmid pLM3, complete sequence) position: , mismatch: 6, identity: 0.786

cactcgaaatgttgataaatggcagaaa	CRISPR spacer
gcgtagaaacattgataaatggcagaaa	Protospacer
   * ****..*****************

3. spacer 5.2|2663724|29|NZ_CP009284|CRISPRCasFinder matches to NZ_CP017941 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

aggcggcaaccgtgaaggcggaagctacg	CRISPR spacer
actcggcaacggtgaaggcggaagccgat	Protospacer
*  ******* **************..

4. spacer 5.2|2663724|29|NZ_CP009284|CRISPRCasFinder matches to NZ_CP005192 (Sphingobium sp. MI1205 plasmid pMI3, complete sequence) position: , mismatch: 7, identity: 0.759

aggcggcaaccgtgaaggcggaagctacg	CRISPR spacer
tggcggcaacggtgaaggcgcaaggcaaa	Protospacer
 ********* ********* *** .* .

5. spacer 5.2|2663724|29|NZ_CP009284|CRISPRCasFinder matches to NZ_CP005193 (Sphingobium sp. MI1205 plasmid pMI4, complete sequence) position: , mismatch: 7, identity: 0.759

aggcggcaaccgtgaaggcggaagctacg	CRISPR spacer
tggcggcaacggtgaaggcgcaaggcaaa	Protospacer
 ********* ********* *** .* .

6. spacer 5.2|2663724|29|NZ_CP009284|CRISPRCasFinder matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 7, identity: 0.759

aggcggcaaccgtgaaggcggaagctacg	CRISPR spacer
aagcggaagccgtgaaggcggaagcggta	Protospacer
*.**** *.**************** ...

7. spacer 5.2|2663724|29|NZ_CP009284|CRISPRCasFinder matches to NZ_CP022424 (Vitreoscilla filiformis strain ATCC 15551 plasmid pVF1, complete sequence) position: , mismatch: 7, identity: 0.759

aggcggcaaccgtgaaggcggaagctacg	CRISPR spacer
acgcggcagccgtgaaggcgaaagcctgc	Protospacer
* ******.***********.****.

8. spacer 5.2|2663724|29|NZ_CP009284|CRISPRCasFinder matches to NC_020563 (Sphingomonas sp. MM-1 plasmid pISP4, complete sequence) position: , mismatch: 7, identity: 0.759

aggcggcaaccgtgaaggcggaagctacg	CRISPR spacer
tggcggcaacggtgaaggcgcaaggcaaa	Protospacer
 ********* ********* *** .* .

9. spacer 5.2|2663724|29|NZ_CP009284|CRISPRCasFinder matches to NZ_CP005087 (Sphingobium sp. TKS plasmid pTK3, complete sequence) position: , mismatch: 7, identity: 0.759

aggcggcaaccgtgaaggcggaagctacg	CRISPR spacer
tggcggcaacggtgaaggcgcaaggcaaa	Protospacer
 ********* ********* *** .* .

10. spacer 5.2|2663724|29|NZ_CP009284|CRISPRCasFinder matches to NC_020562 (Sphingomonas sp. MM-1 plasmid pISP1, complete sequence) position: , mismatch: 7, identity: 0.759

aggcggcaaccgtgaaggcggaagctacg	CRISPR spacer
tggcggcaacggtgaaggcgcaaggcaaa	Protospacer
 ********* ********* *** .* .

11. spacer 5.2|2663724|29|NZ_CP009284|CRISPRCasFinder matches to NC_008697 (Nocardioides sp. JS614 plasmid pNOCA01, complete sequence) position: , mismatch: 7, identity: 0.759

aggcggcaaccgtgaaggcggaagctacg	CRISPR spacer
ccgcggcaatcgtgaaggccgaagcagag	Protospacer
  *******.********* ***** . *

12. spacer 5.2|2663724|29|NZ_CP009284|CRISPRCasFinder matches to NZ_CP029540 (Aquitalea sp. USM4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

aggcggcaaccgtgaaggcggaagctacg	CRISPR spacer
aggcggcaagcgtgaaggcggctcgtcca	Protospacer
********* ***********    * *.

13. spacer 7.1|3517875|28|NZ_CP009284|CRISPRCasFinder matches to MG748548 (Escherichia phage EP335, complete genome) position: , mismatch: 7, identity: 0.75

tggccagtttacccttatggtggcagaa	CRISPR spacer
actccagtttaccctgatgatggcagcc	Protospacer
   ************ ***.******

14. spacer 7.1|3517875|28|NZ_CP009284|CRISPRCasFinder matches to NC_023593 (Escherichia phage KBNP1711, complete genome) position: , mismatch: 7, identity: 0.75

tggccagtttacccttatggtggcagaa	CRISPR spacer
actccagtttaccctgatgatggcagcc	Protospacer
   ************ ***.******

15. spacer 2.1|136275|58|NZ_CP009284|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.862

---gctaccatattttcggaggcttagctcagctgggagagcatctgccttacaagcaga	CRISPR spacer
cgggtcacca---ttatggaggcttagctcagctgggagagcatctgccttacaagcaga	Protospacer
   *..****   ** .*******************************************

16. spacer 2.1|136275|58|NZ_CP009284|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.862

---gctaccatattttcggaggcttagctcagctgggagagcatctgccttacaagcaga	CRISPR spacer
cgggtcacca---ttatggaggcttagctcagctgggagagcatctgccttacaagcaga	Protospacer
   *..****   ** .*******************************************

17. spacer 2.1|136275|58|NZ_CP009284|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.845

---gctaccatattttcggaggcttagctcagctgggagagcatctgccttacaagcaga	CRISPR spacer
cgggtcacca---tcatggaggcttagctcagctgggagagcatctgccttacaagcaga	Protospacer
   *..****   *. .*******************************************

18. spacer 2.1|136275|58|NZ_CP009284|CRISPRCasFinder matches to NZ_CP016544 (Planococcus donghaensis strain DSM 22276 plasmid pPD76, complete sequence) position: , mismatch: 9, identity: 0.845

gctaccatattttcggaggcttagctcagctgggagagcatctgccttacaagcagag	CRISPR spacer
ggggtcaccattttggaggattagctcagctgggagagcatctgccttacaagcagag	Protospacer
*  ..**.  ***.***** **************************************

19. spacer 2.1|136275|58|NZ_CP009284|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.845

----gctaccatattttcggaggcttagctcagctgggagagcatctgccttacaagcag	CRISPR spacer
aggggtcaccatat----ggaggattagctcagctgggagagcatctgccttacaagcag	Protospacer
    *..*******    ***** ************************************

20. spacer 2.1|136275|58|NZ_CP009284|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.845

---gctaccatattttcggaggcttagctcagctgggagagcatctgccttacaagcaga	CRISPR spacer
ggggtcaccaaaat---ggaggattagctcagctgggagagcatctgccttacaagcaga	Protospacer
   *..**** * *   ***** *************************************

21. spacer 2.1|136275|58|NZ_CP009284|CRISPRCasFinder matches to CP031730 (Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.828

gctaccatattttcggaggcttagctcagctgggagagcatctgccttacaagcagag	CRISPR spacer
acacctgtttctatggaggattagctcagctgggagagcatctgccttacaagcagag	Protospacer
.*  *..* *.* .***** **************************************

22. spacer 2.1|136275|58|NZ_CP009284|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 11, identity: 0.81

-----gctaccatattttcggaggcttagctcagctgggagagcatctgccttacaagca	CRISPR spacer
aagtcgcttaca-----acggaggcttagctcagctgggagagcatctgccttacaagca	Protospacer
     ***  **      ******************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

331128 : 340318

Caulobacter_phage(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042172244.1\|331128_332157_+	agmatine deiminase family protein	A7KA66	Acanthocystis_turfacea_chlorella_virus	2.8e-64	37.5
WP_042172246.1\|332182_333058_+	N-carbamoylputrescine amidase	M1GUG4	Paramecium_bursaria_Chlorella_virus	1.0e-75	48.8
WP_042172249.1\|333304_334120_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_042172251.1\|334230_334878_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_042181988.1\|334894_335617_+	amino acid ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.1e-22	30.3
WP_042172254.1\|335772_336219_+	tellurite resistance TerB family protein	A0A1Y0T181	Sinorhizobium_phage	1.5e-06	29.3
WP_039869239.1\|336355_336952_+	TerD family protein	K4JRX3	Caulobacter_phage	5.8e-22	33.7
WP_039869242.1\|336996_337572_+	TerD family protein	A0A2L1IWC0	Streptomyces_phage	4.8e-05	35.9
WP_039869245.1\|337595_338177_+	TerD family protein	K4JRX3	Caulobacter_phage	1.3e-26	37.2
WP_042172258.1\|338306_339545_+	tellurium resistance protein TerA	NA	NA	NA	NA
WP_042172260.1\|339574_340318_+	TerC family protein	A0A068EP98	Bacillus_phage	3.1e-57	52.1

DBSCAN-SWA_2

648945 : 660503

Mollivirus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042172692.1\|648945_650241_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	5.7e-22	27.5
WP_042172694.1\|650298_651189_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	2.3e-38	33.1
WP_019913657.1\|651575_651821_+	phosphoribosylformylglycinamidine synthase subunit PurS	A0A0E3FJ99	Synechococcus_phage	2.2e-07	36.7
WP_042172695.1\|651826_652516_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_042172697.1\|652493_654740_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.3e-164	41.6
WP_042182068.1\|654724_656221_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	8.8e-51	33.3
WP_042172699.1\|657019_658060_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.8e-64	42.8
WP_042172701.1\|658059_658674_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.4e-25	37.6
WP_042172703.1\|658955_660503_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.2e-74	50.7

DBSCAN-SWA_3

2445766 : 2455980

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042175022.1\|2445766_2447560_+	HAMP domain-containing protein	W8CYF6	Bacillus_phage	1.0e-37	33.0
WP_042175024.1\|2447751_2448480_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.9e-36	34.2
WP_081947560.1\|2448658_2449438_+	phosphate ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.7e-17	33.5
WP_042175028.1\|2449507_2450167_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_042175030.1\|2450383_2453044_+	DNA polymerase I	A0A218MKQ4	uncultured_virus	5.4e-59	29.5
WP_042175032.1\|2453095_2453944_+	DNA-formamidopyrimidine glycosylase	A0A127AWE5	Bacillus_phage	5.4e-21	30.0
WP_081947561.1\|2454121_2454814_+	sporulation membrane protein YtaF	NA	NA	NA	NA
WP_042175033.1\|2454823_2455420_+	dephospho-CoA kinase	NA	NA	NA	NA
WP_042182440.1\|2455416_2455980_+	lytic transglycosylase domain-containing protein	A0A0H3V0Q1	Geobacillus_virus	5.9e-16	38.4

DBSCAN-SWA_4

4618952 : 4629083

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042178326.1\|4618952_4620155_-	D-alanyl-D-alanine carboxypeptidase	A0A1P8VVG5	Erythrobacter_phage	4.8e-07	34.0
WP_042178329.1\|4620314_4620806_-	sporulation protein YtfJ	NA	NA	NA	NA
WP_042178331.1\|4620922_4621612_-	DUF2953 domain-containing protein	NA	NA	NA	NA
WP_042178334.1\|4621890_4622490_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	3.1e-15	32.4
WP_042178336.1\|4622458_4623250_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	5.4e-07	34.5
WP_042178338.1\|4623411_4623879_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.8e-42	56.3
WP_042178341.1\|4623927_4625181_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.3e-116	53.7
WP_042178344.1\|4625269_4625935_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	5.5e-37	39.1
WP_042178346.1\|4626018_4627119_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.3e-55	35.8
WP_042178348.1\|4627746_4628142_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_042178351.1\|4628381_4629083_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.1e-38	36.3

DBSCAN-SWA_5

5684936 : 5735081

Paenibacillus_phage(32.5%)

capsid,protease,terminase,head,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042180064.1\|5684936_5686532_-	recombinase family protein	A0A0C5AJM7	Paenibacillus_phage	1.4e-131	48.6
WP_042180066.1\|5686538_5686721_-	hypothetical protein	NA	NA	NA	NA
WP_042180068.1\|5686759_5687239_-	hypothetical protein	A0A0C5AJ96	Bacteriophage	1.3e-35	55.7
WP_042180070.1\|5687293_5687980_-	hypothetical protein	NA	NA	NA	NA
WP_042180072.1\|5688045_5688699_-	hypothetical protein	NA	NA	NA	NA
WP_042180075.1\|5688695_5689154_-	hypothetical protein	NA	NA	NA	NA
WP_042180078.1\|5689150_5689603_-	ASCH domain-containing protein	A0A068CCC0	Rhizobium_phage	8.6e-10	28.2
WP_042180082.1\|5689599_5690658_-	phage Gp37/Gp68 family protein	A0A2P1A0W3	Gordonia_phage	3.7e-88	49.6
WP_052419197.1\|5690654_5691014_-	hypothetical protein	A0A0E3Y4X1	Fusobacterium_phage	1.3e-13	42.0
WP_042180085.1\|5691064_5691376_-	hypothetical protein	NA	NA	NA	NA
WP_052419198.1\|5691458_5692088_-	hypothetical protein	H7BV66	unidentified_phage	1.5e-28	32.0
WP_156131188.1\|5692730_5693357_-	hypothetical protein	D4P7X8	Rhodococcus_phage	2.0e-33	44.3
WP_042180091.1\|5693340_5693556_-	zinc-finger domain-containing protein	NA	NA	NA	NA
WP_042180094.1\|5694315_5695818_-	DNA cytosine methyltransferase	A0A1I9KFW0	Aeromonas_phage	1.3e-110	43.1
WP_042180097.1\|5695814_5696153_-	hypothetical protein	NA	NA	NA	NA
WP_042180099.1\|5696134_5696335_-	hypothetical protein	NA	NA	NA	NA
WP_156131189.1\|5696325_5696469_-	hypothetical protein	NA	NA	NA	NA
WP_042180102.1\|5696647_5697121_-	hypothetical protein	NA	NA	NA	NA
WP_052419200.1\|5697132_5697780_-	hypothetical protein	A0A0C5ABQ1	Bacteriophage	3.7e-22	38.5
WP_042180104.1\|5697779_5698484_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_042180107.1\|5698486_5698747_-	hypothetical protein	A0A0K2CXU9	Paenibacillus_phage	3.4e-11	48.7
WP_042180110.1\|5698718_5700068_-	hypothetical protein	W8EEZ1	Geobacillus_phage	7.9e-59	33.5
WP_081947736.1\|5700057_5700510_-	hypothetical protein	NA	NA	NA	NA
WP_042180116.1\|5700379_5701300_-	replication protein	A0A290FZL4	Caldibacillus_phage	2.9e-20	46.2
WP_042180120.1\|5701318_5702083_-	hypothetical protein	NA	NA	NA	NA
WP_081947883.1\|5702265_5702511_-	HNH endonuclease	U5PZG9	Bacillus_phage	8.2e-15	53.4
WP_081947737.1\|5702603_5703431_-	hypothetical protein	R9TMF6	Paenibacillus_phage	2.2e-88	67.2
WP_042180126.1\|5703399_5704161_-	recombinase RecT	R9TNH4	Paenibacillus_phage	9.9e-91	66.9
WP_042180129.1\|5704164_5705796_-	AAA family ATPase	R9TQJ2	Paenibacillus_phage	8.9e-198	64.9
WP_042180132.1\|5706066_5706261_-	hypothetical protein	NA	NA	NA	NA
WP_156131190.1\|5706366_5706534_-	hypothetical protein	NA	NA	NA	NA
WP_156131191.1\|5706563_5706842_-	hypothetical protein	A0A2D1GQB9	Lysinibacillus_phage	6.1e-06	53.7
WP_042180138.1\|5706813_5707008_-	hypothetical protein	NA	NA	NA	NA
WP_156131192.1\|5706998_5707208_-	hypothetical protein	NA	NA	NA	NA
WP_042180141.1\|5707168_5707447_-	hypothetical protein	NA	NA	NA	NA
WP_052419202.1\|5707464_5707986_-	sigma-70 family RNA polymerase sigma factor	A0A068EML2	Bacillus_phage	9.7e-05	30.6
WP_042180144.1\|5707982_5708420_-	hypothetical protein	NA	NA	NA	NA
WP_052419203.1\|5708420_5709371_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_042180147.1\|5709354_5709582_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_042180150.1\|5709793_5710186_+	helix-turn-helix domain-containing protein	A0A0C5AN12	Bacteriophage	1.7e-17	39.4
WP_042180153.1\|5710378_5710606_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_042180157.1\|5710897_5711281_-	hypothetical protein	NA	NA	NA	NA
WP_042180160.1\|5711417_5711945_-	hypothetical protein	S5MBZ7	Brevibacillus_phage	1.2e-18	38.8
WP_042180163.1\|5711937_5712561_-	hypothetical protein	NA	NA	NA	NA
WP_042180166.1\|5712765_5712984_+	helix-turn-helix transcriptional regulator	A0A1P8CWU2	Bacillus_phage	2.2e-11	50.0
WP_052419204.1\|5712997_5713402_-	hypothetical protein	NA	NA	NA	NA
WP_042180169.1\|5713545_5713758_-	hypothetical protein	R9TLP0	Paenibacillus_phage	2.9e-16	62.7
WP_042180172.1\|5713760_5714603_-	peptidase M15	A0A127AWA8	Bacillus_phage	2.2e-43	58.9
WP_042180175.1\|5714603_5714957_-	hypothetical protein	NA	NA	NA	NA
WP_042180178.1\|5714946_5715165_-	hypothetical protein	NA	NA	NA	NA
WP_042180180.1\|5715166_5715454_-	hypothetical protein	NA	NA	NA	NA
WP_052419205.1\|5715578_5718083_-	hypothetical protein	A0A1S5SAE0	Streptococcus_phage	3.6e-12	54.2
WP_052419206.1\|5718610_5719165_-	hypothetical protein	NA	NA	NA	NA
WP_042180186.1\|5719210_5721202_-	hypothetical protein	R9TMD0	Paenibacillus_phage	7.1e-149	57.1
WP_042183200.1\|5721206_5721566_-	hypothetical protein	R9TNE7	Paenibacillus_phage	1.1e-31	54.2
WP_081947738.1\|5721587_5724287_-	hypothetical protein	R9TLN4	Paenibacillus_phage	4.6e-98	68.4
WP_042180188.1\|5724291_5724525_-	hypothetical protein	NA	NA	NA	NA
WP_042180190.1\|5724569_5724947_-	hypothetical protein	R9TMC6	Paenibacillus_phage	5.0e-35	66.1
WP_081947739.1\|5725003_5725459_-	hypothetical protein	R9TNE5	Paenibacillus_phage	1.2e-43	66.2
WP_042180194.1\|5725422_5725800_-	hypothetical protein	R9TQH0	Paenibacillus_phage	2.9e-27	46.8
WP_081947884.1\|5725805_5726228_-	HK97 gp10 family phage protein	R9TLN1	Paenibacillus_phage	4.8e-47	68.1
WP_042180199.1\|5726257_5726581_-\|head	phage head closure protein	A0A1J0GUY4	Halomonas_phage	3.6e-10	33.0
WP_081947740.1\|5726580_5727144_-	hypothetical protein	NA	NA	NA	NA
WP_042180204.1\|5727067_5727415_-	hypothetical protein	A6XMJ7	Bacillus_virus	2.0e-06	39.5
WP_052419208.1\|5727458_5728865_-\|capsid	phage major capsid protein	A0A1B1IQC5	uncultured_Mediterranean_phage	3.0e-40	32.4
WP_042180206.1\|5728869_5729718_-\|protease	Clp protease ClpP	A0A0C5AEN1	Bacteriophage	6.7e-56	49.8
WP_042180208.1\|5729717_5730950_-\|portal	phage portal protein	M1PLL1	Streptococcus_phage	1.9e-83	43.0
WP_042180210.1\|5731119_5732811_-\|terminase	terminase large subunit	K7PKT2	Enterobacteria_phage	9.5e-118	41.8
WP_042180213.1\|5732776_5733313_-\|terminase	phage terminase small subunit P27 family	A0A2H4J8E3	uncultured_Caudovirales_phage	4.3e-16	36.6
WP_042180215.1\|5733688_5734039_-	HNH endonuclease	Q38456	Bacillus_phage	6.4e-29	54.3
WP_042180217.1\|5734022_5734397_-	hypothetical protein	NA	NA	NA	NA
WP_042180219.1\|5734532_5735081_-	hypothetical protein	A0A2I7R1C1	Vibrio_phage	2.3e-25	37.4

DBSCAN-SWA_6

6327567 : 6340480

Enterobacteria_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042183341.1\|6327567_6328431_-	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	9.6e-34	35.5
WP_042181144.1\|6328439_6329462_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.1e-79	47.4
WP_042181146.1\|6329491_6330040_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.8e-38	44.6
WP_042181148.1\|6330059_6330803_-	NTP transferase domain-containing protein	I7I009	Enterobacteria_phage	8.5e-55	45.7
WP_042181150.1\|6330824_6331757_-	glycosyltransferase	A8CG95	Salmonella_phage	9.7e-40	33.2
WP_042181152.1\|6331749_6332715_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_042183344.1\|6332731_6333766_-	4-hydroxy-2-oxovalerate aldolase	E5EQ69	Micromonas_sp._RCC1109_virus	2.7e-75	46.3
WP_042181155.1\|6333722_6334637_-	acetaldehyde dehydrogenase (acetylating)	E5EQ71	Micromonas_sp._RCC1109_virus	8.0e-55	44.9
WP_081947769.1\|6334665_6336474_-	thiamine pyrophosphate-binding protein	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	4.9e-88	36.8
WP_042181157.1\|6336470_6337247_-	hypothetical protein	NA	NA	NA	NA
WP_042181159.1\|6337263_6338340_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.6e-17	26.0
WP_042181161.1\|6338336_6339134_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_042183348.1\|6339151_6340480_-	lipopolysaccharide biosynthesis protein RfbH	A0A218MN59	uncultured_virus	2.4e-60	32.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009284

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection