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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP008808 Campylobacter fetus subsp. fetus 04/554 chromosome, complete genome 1 crisprs PD-DExK,DEDDh,cas6,csx23,cas10,csm3gr7,csx10gr5,csx19 2 3 1 0
NZ_CP008809 Campylobacter fetus subsp. fetus 04/554 plasmid pCFF04554, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP008808
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP008808_1 670309-670665 Orphan NA
5 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP008808_1 1.1|670339|36|NZ_CP008808|CRISPRCasFinder 670339-670374 36 NZ_CP008808.1 1105252-1105287 0 1.0
NZ_CP008808_1 1.6|670340|35|NZ_CP008808|CRT 670340-670374 35 NZ_CP008808.1 1105252-1105286 0 1.0

1. spacer 1.1|670339|36|NZ_CP008808|CRISPRCasFinder matches to position: 1105252-1105287, mismatch: 0, identity: 1.0

agcgatgcgaactgaaaaagtaaataaaaatctagc	CRISPR spacer
agcgatgcgaactgaaaaagtaaataaaaatctagc	Protospacer
************************************

2. spacer 1.6|670340|35|NZ_CP008808|CRT matches to position: 1105252-1105286, mismatch: 0, identity: 1.0

gcgatgcgaactgaaaaagtaaataaaaatctagc	CRISPR spacer
gcgatgcgaactgaaaaagtaaataaaaatctagc	Protospacer
***********************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP008808_1 1.1|670339|36|NZ_CP008808|CRISPRCasFinder 670339-670374 36 NZ_CP014569 Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence 8750-8785 1 0.972
NZ_CP008808_1 1.1|670339|36|NZ_CP008808|CRISPRCasFinder 670339-670374 36 NZ_CP007000 Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence 79715-79750 1 0.972
NZ_CP008808_1 1.6|670340|35|NZ_CP008808|CRT 670340-670374 35 NZ_CP014569 Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence 8751-8785 1 0.971
NZ_CP008808_1 1.6|670340|35|NZ_CP008808|CRT 670340-670374 35 NZ_CP007000 Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence 79715-79749 1 0.971
NZ_CP008808_1 1.10|670603|32|NZ_CP008808|CRT 670603-670634 32 NZ_CP010270 Paenibacillus polymyxa strain Sb3-1 plasmid pSb31l, complete sequence 52079-52110 8 0.75
NZ_CP008808_1 1.10|670603|32|NZ_CP008808|CRT 670603-670634 32 NZ_CP011513 Paenibacillus peoriae strain HS311 plasmid unnamed, complete sequence 9082-9113 8 0.75
NZ_CP008808_1 1.10|670603|32|NZ_CP008808|CRT 670603-670634 32 AP014109 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C35-MedDCM-OCT-S34-C78, *** SEQUENCING IN PROGRESS *** 23316-23347 10 0.688

1. spacer 1.1|670339|36|NZ_CP008808|CRISPRCasFinder matches to NZ_CP014569 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence) position: , mismatch: 1, identity: 0.972

agcgatgcgaactgaaaaagtaaataaaaatctagc	CRISPR spacer
agcgatgcgaactgaaaaagtaaatagaaatctagc	Protospacer
**************************.*********

2. spacer 1.1|670339|36|NZ_CP008808|CRISPRCasFinder matches to NZ_CP007000 (Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence) position: , mismatch: 1, identity: 0.972

agcgatgcgaactgaaaaagtaaataaaaatctagc	CRISPR spacer
agcgatgcgaactgaaaaagtaaatagaaatctagc	Protospacer
**************************.*********

3. spacer 1.6|670340|35|NZ_CP008808|CRT matches to NZ_CP014569 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence) position: , mismatch: 1, identity: 0.971

gcgatgcgaactgaaaaagtaaataaaaatctagc	CRISPR spacer
gcgatgcgaactgaaaaagtaaatagaaatctagc	Protospacer
*************************.*********

4. spacer 1.6|670340|35|NZ_CP008808|CRT matches to NZ_CP007000 (Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence) position: , mismatch: 1, identity: 0.971

gcgatgcgaactgaaaaagtaaataaaaatctagc	CRISPR spacer
gcgatgcgaactgaaaaagtaaatagaaatctagc	Protospacer
*************************.*********

5. spacer 1.10|670603|32|NZ_CP008808|CRT matches to NZ_CP010270 (Paenibacillus polymyxa strain Sb3-1 plasmid pSb31l, complete sequence) position: , mismatch: 8, identity: 0.75

cgctctaattactttgtcttcttcattatact	CRISPR spacer
cccaccggttactttgtcttctctattatacc	Protospacer
* * *...**************..*******.

6. spacer 1.10|670603|32|NZ_CP008808|CRT matches to NZ_CP011513 (Paenibacillus peoriae strain HS311 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cgctctaattactttgtcttcttcattatact	CRISPR spacer
cccaccggttactttgtcttctctattatacc	Protospacer
* * *...**************..*******.

7. spacer 1.10|670603|32|NZ_CP008808|CRT matches to AP014109 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C35-MedDCM-OCT-S34-C78, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

cgctctaattactttgtcttcttcattatact	CRISPR spacer
tatcttaattacttttttttcttcattagata	Protospacer
.....********** *.********** *. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1118176 : 1123640 7 Campylobacter_phage(33.33%) portal NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage