CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009533	Pseudomonas rhizosphaerae strain DSM 16299 chromosome, complete genome	15 crisprs	DEDDh,csa3,cas3,DinG	0	2	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009533_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009533_1

384570-384682

Orphan

Consensus_repeat	Method
CCCTGTGGGAGCGGGTTCTACCCGCGAAAACGCCAGCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009533_1

>merge|NZ_CP009533|1|384570-384682|CRISPRCasFinder
CCCTGTGGGAGCGGGTTCTACCCGCGAAAACGCCAGCCCCCACACCACCAATCTCGCGGCACCCACCCCGTCCCCCTGTGGGAGCGGGTTCTACCCGCGAAGACGCCAGCCCC

>NZ_CP009533|1|1|384570-384682|CRISPRCasFinder
CCCTGTGGGAGCGGGTTCTACCCGCGAAAACGCCAGCCCC	CACACCACCAATCTCGCGGCACCCACCCCGTCC
CCCTGTGGGAGCGGGTTCTACCCGCGAAGACGCCAGCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009533.1\|WP_043185694.1\|376783_378478_+\|potassium-transporting-ATPase-subunit-KdpA	unknown	unknown	gnl\|CDD\|235494
NZ_CP009533.1\|WP_043185699.1\|385254_386172_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP009533.1\|WP_052393207.1\|383787_384510_+\|response-regulator	unknown	unknown	gnl\|CDD\|182522
NZ_CP009533.1\|WP_043185707.1\|389218_390013_+\|thioesterase-family-protein	unknown	unknown	gnl\|CDD\|379298
NZ_CP009533.1\|WP_043185689.1\|371619_375252_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|182330
NZ_CP009533.1\|WP_043185718.1\|393499_393808_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009533.1\|WP_043185696.1\|378488_380543_+\|potassium-transporting-ATPase-subunit-KdpB	unknown	unknown	gnl\|CDD\|234905
NZ_CP009533.1\|WP_043185715.1\|392826_393303_+\|transcription-elongation-factor-GreB	unknown	unknown	gnl\|CDD\|179345
NZ_CP009533.1\|WP_043193234.1\|380559_381120_+\|potassium-transporting-ATPase-subunit-KdpC	unknown	unknown	gnl\|CDD\|376890
NZ_CP009533.1\|WP_043193238.1\|384895_385174_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009533.1\|WP_052393205.1\|370407_371565_+\|lactonase-family-protein	unknown	unknown	gnl\|CDD\|378416
NZ_CP009533.1\|WP_043185709.1\|389981_390212_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009533.1\|WP_043185701.1\|386141_387125_+\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP009533.1\|WP_052393209.1\|390367_391213_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|182449
NZ_CP009533.1\|WP_043185683.1\|369997_370303_+\|DUF5629-family-protein	unknown	unknown	gnl\|CDD\|376055
NZ_CP009533.1\|WP_082223535.1\|376687_376777_+\|potassium-transporting-ATPase-subunit-F	unknown	unknown	unknown
NZ_CP009533.1\|WP_043185691.1\|375248_376490_-\|exonuclease-SbcCD-subunit-D-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|182871
NZ_CP009533.1\|WP_043185697.1\|381148_383785_+\|sensor-histidine-kinase-KdpD	unknown	unknown	gnl\|CDD\|225115
NZ_CP009533.1\|WP_043185712.1\|391334_392756_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|226971
NZ_CP009533.1\|WP_043185705.1\|387121_389107_+\|DUF3488-domain-containing-protein	unknown	unknown	gnl\|CDD\|378784

Protein	Function_ID	Function_description	E-value
NZ_CP009533.1\|WP_043185694.1\|376783_378478_+\|potassium-transporting-ATPase-subunit-KdpA	gnl\|CDD\|235494	PRK05482, PRK05482, potassium-transporting ATPase subunit A; Provisional.	0
NZ_CP009533.1\|WP_043185699.1\|385254_386172_+\|AAA-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	1.89971e-87
NZ_CP009533.1\|WP_052393207.1\|383787_384510_+\|response-regulator	gnl\|CDD\|182522	PRK10529, PRK10529, DNA-binding transcriptional activator KdpE; Provisional.	4.54053e-86
NZ_CP009533.1\|WP_043185707.1\|389218_390013_+\|thioesterase-family-protein	gnl\|CDD\|379298	pfam13622, 4HBT_3, Thioesterase-like superfamily. This family contains a wide variety of enzymes, principally thioesterases. These enzymes are part of the Hotdog fold superfamily.	3.76937e-50
NZ_CP009533.1\|WP_043185689.1\|371619_375252_-\|AAA-family-ATPase	gnl\|CDD\|182330	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.	1.08338e-100
NZ_CP009533.1\|WP_043185696.1\|378488_380543_+\|potassium-transporting-ATPase-subunit-KdpB	gnl\|CDD\|234905	PRK01122, PRK01122, potassium-transporting ATPase subunit KdpB.	0
NZ_CP009533.1\|WP_043185715.1\|392826_393303_+\|transcription-elongation-factor-GreB	gnl\|CDD\|179345	PRK01885, greB, transcription elongation factor GreB; Reviewed.	4.00072e-103
NZ_CP009533.1\|WP_043193234.1\|380559_381120_+\|potassium-transporting-ATPase-subunit-KdpC	gnl\|CDD\|376890	pfam02669, KdpC, K+-transporting ATPase, c chain. This family consists of K+-transporting ATPase, c chain, KdpC. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilize the Kdp complex. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+-transporting subunit KdpA. The K+ transport system actively transports K+ ions via ATP hydrolysis.	2.69569e-81
NZ_CP009533.1\|WP_052393205.1\|370407_371565_+\|lactonase-family-protein	gnl\|CDD\|378416	pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller. This entry contains bacterial 6-phosphogluconolactonases (6PGL)YbhE-type (EC:3.1.1.31) which hydrolyze 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonising enzyme carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and muconate cycloisomerase (EC:5.5.1.1), which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold.	3.37241e-128
NZ_CP009533.1\|WP_043185701.1\|386141_387125_+\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	3.66353e-23
NZ_CP009533.1\|WP_052393209.1\|390367_391213_-\|TatD-family-hydrolase	gnl\|CDD\|182449	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD.	1.05996e-113
NZ_CP009533.1\|WP_043185683.1\|369997_370303_+\|DUF5629-family-protein	gnl\|CDD\|376055	pfam18629, DUF5629, Family of unknown function (DUF5629). This is a domain of unknown function found in hypothetical proteins from Pseudomonas aeruginosa.	4.30193e-20
NZ_CP009533.1\|WP_043185691.1\|375248_376490_-\|exonuclease-SbcCD-subunit-D-C-terminal-domain-containing-protein	gnl\|CDD\|182871	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.	6.14118e-78
NZ_CP009533.1\|WP_043185697.1\|381148_383785_+\|sensor-histidine-kinase-KdpD	gnl\|CDD\|225115	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms].	0
NZ_CP009533.1\|WP_043185712.1\|391334_392756_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|226971	COG4623, COG4623, Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane].	7.59115e-124
NZ_CP009533.1\|WP_043185705.1\|387121_389107_+\|DUF3488-domain-containing-protein	gnl\|CDD\|378784	pfam11992, DUF3488, Domain of unknown function (DUF3488). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with pfam01841. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.	2.29943e-105

>NZ_CP009533.1|WP_052393207.1|383787_384510_+|response-regulator
MSLPDSPLASTSLPSTLLVIDDEPQIRKFLRISLASQGYKVIEAGTGAEGLGQAALMRPDLIVLDLGLPDMDGQQVLEELRQWSTVPVLVLSVRASEAQKVQALDSGANDYVTKPFGIQEFLARVRALLRQASGSPVHEAALQLGPLQVDLASRRVTLDGAEVALTRKEYAVLAQLARYPGRVITQQQLLKDIWGPTHLDDSHYLRIVVGHLRQKLGDDPAAPRFLITEPGVGYRLASPD
>NZ_CP009533.1|WP_043185697.1|381148_383785_+|sensor-histidine-kinase-KdpD
MSDSGRADALLAALPRNGRGRLKVFLGAAPGVGKTYAMLQAAHARQRQGIEVLAAVVQTHGRAETEALLVGLPQQALRRSQYRDVILEEMDLDAVLAARPALALVDELAHSNAPGSRHAKRWQDVQDLLAAGIDVYTTVNVQHLESLNDQVQSITGVQVRETLPDWVVQEADDLLLIDLPPRELLERLREGKVYVPEQARAAIDAFFTQTNLSALRELAMQTAAAQVDDDLHEGYRSLGQQAPSVRGRLLVGIVADEQAERLVRHASRVARRRHLPWSVVHVDNGRLLDETARQRLQLAQQIAERLGGEVVELRDAEVARTLLQHAGDRRANLILVGQSRRRRFGAGLAERLLRSHSGVEINVLARAQVQPSKPRRPRPVGRWREYVLALLATLLASGLAWAVAQVLDLPNISLVFLAAVLLVAVRSSPGPALSCAALSFLAYDFLFIPPNFSLSIQRQEDVLTLLFFLLMAALTGNLAARQRQQLSALRETQAHTAQLLELSRLLAAATDRQAVFSAAAQHLHGWPGLDICLLERGEQGWKVAHGSAAPFTTTELAAAQWAGNHAQPAGLGTATLPAGRWWWLPVTLEGRVLALLAVAERQPGRLDGHGRRLLGALVQPVAQALARADLAHDLEAARLHGETEQLRSALLASVSHDLRTPLTAMRGSIDSLLALGSALAPDDRQALLEVTRDEAERLDRYIQNLLDMTRLGHGALKLARDWVAVGDIVASAVGRLRAPLAPLQVQVQVPAQLPLLYVHAALIEQALVNVLENAARFSPVGGRLQVSARVRDDSLLLAVSDEGPGIPEAERTKIFDMFYTAARGDRGGQGTGLGLAICQGMVGAHGGRVEVSSGIDGQGTCIALCLPLRAQPGADADT
>NZ_CP009533.1|WP_043193234.1|380559_381120_+|potassium-transporting-ATPase-subunit-KdpC
MNSLLRPALSLILLMTLLTGGAYPLLVWAVGQWAFPAQANGSLVRDAQGEVRGSALLAQAFTDERWFHSRPSAADYATLASGASNLAPSNPALGTRVLAQADEQFDAQQGPVPLALLTTSASGLDPDLPPAAVSYQVPRVARERGLPESTLRALVQAQTRSPAIGPEVVNVLALNQALDRLTSQSR
>NZ_CP009533.1|WP_043185696.1|378488_380543_+|potassium-transporting-ATPase-subunit-KdpB
MNRSTVAAATQPQSPAGATLSALWRPALLQAFVKLDPRRLLRSPVLLVVELCAVLTTGLCLLPDPAVSAGVAVQIAVWLWFTLLFANFAEALAEGRGRARADSLKAGSQGLQARRQCADGSFETVAATALRKGDVVRVEAGQMIPGDGEVCEGIAAVNEAAITGESAPVIRESGGDRSAVTGNTLVVSDWLLIEITTDPGESTLDRMIALVEGAKRQKTPNEVALDILLIGLTMVFLLVVVTLQPFARFSGQSLPLVFLLALLVTLIPTTIAGLLSAIGIAGMDRLVRLNVVAKSGRAVEAAGDVHVLLLDKTGTITFGNRRCSALHAAPGVSDAQMAEGALLASLGDETAEGRSVVEFIRPLFSIDEPATERWQSVPFSAQTRLSGVDLDQQSYRKGAVDSLLAFIGQSRAQLAPALAEHIERIAQSGGTPLLVCRDRQLLGVIHLKDVVKPGIRERFEQLRKLGIRTVMVTGDNPLTAAAIAAEAGVDDVLAEATPQKKLARIRQEQADGRLVAMCGDGANDAPALAQADVGVAMNDGTQAAREAANMVDLDSDPTKLLDIVRIGKELLVTRGALTTFSIANDVAKYFAILPALFAAVYPSLGVLNVMNLASPQSAILSAIVFNALIIIVLIPLALRGVRVQADSAAQLLRRNVLIYGLGGLVVPFIGIKAIDIVLTALHLV
>NZ_CP009533.1|WP_043185694.1|376783_378478_+|potassium-transporting-ATPase-subunit-KdpA
MHSHDFALIAAFFALILLPAPWLGRFYYKVMEGQRTWLSVPLQPVEKLCYRFAGIDAQQQQTWQRYALALLAFNLAGFGVLFAILMLQGYLPLNPQHLPGQEWTLAFNTAVSFMANTNWQAYSGETSLSYLSQMAGLGVQNFLSAATGLAVLVALCRGISRRSASTLGNFWVDVTRATLYGLLPLALLLAVFLVWQGVPQTFAPYVDALTLQGNAQTIPLGPAASQIAIKQLGTNGGGFFGVNSAHPFENPTAWSNLFELAGILIIPVALVFTFGHYVKDLRQSRAILACMLTLLLLGLGLSLYAEQQPNPSLASAMVDQAAPLEGKESRFGTTASVLWSVATTAASNGSVNAMHDSLSPLSGMVALVNMMLGEVIFGGVGAGLYGMLLNVLLTVFLAGLMIGRTPEYLGKKLQAREVRWLVASLLVMPVGVLVLGAIAVSLPGPAGAVSNPGPHGFTQLLYAYTSASANNGSAFAGLSANTAFHNLMLALGMLLGRFGYILPVLALAGALASKNASAPSADSFATHGLLFITLLTVTLLIVGGLTFLPVLALGPIAEHLNMHF
>NZ_CP009533.1|WP_082223535.1|376687_376777_+|potassium-transporting-ATPase-subunit-F
MSVLDGLFLLLAIGLFVYLLVALLRASGG
>NZ_CP009533.1|WP_043185691.1|375248_376490_-|exonuclease-SbcCD-subunit-D-C-terminal-domain-containing-protein
MRLFHTSDWHLGQSLHGQERDFEHASFLRWLLRQLAQRQPDVLLVAGDIFDTVNPPVRAQERLYNFIVSAHEQQPQLTIVMIAGNHDSGSRIELPGPLMRRLRTHALGRVMWLEDGRLDSERLLLPLPDASGEVQAWCLALPFLRPAEVTGATLGEDYLQGIARVHEMLIAAANARRSPGQALIAISHAHMAGGSVSMESERSLVIGSAEALPASLFDASISYVALGHLHKPQKVNGESRIRYSGSPIPLSFSEIEYPHQILEIECAGEQLVSVEPILIPRAVDLLRIGPAPLPQVREQLQQLPDVDLLADVLGYPWLEVRVVLDEPQPDLRQHIETALQGKAVRLVRIAAEYAGRVNADNEDVGALIELDQLSPHELFSRAWLDSYGSEVDEQTLDDFAQLLQEVQLEGETP
>NZ_CP009533.1|WP_043185689.1|371619_375252_-|AAA-family-ATPase
MKILAIRLKNLASLAGPFELDFTAEPLVSAGLFAITGPTGAGKSTLLDALCLALFGAVPRLGNASQSAKVPDADGEIGSYDPRTLLRRGTGAGYAEVDFLGVDGRRYRARWEANRARDKPAGKLQNSRQSLRDLDNDQLLASQKGEYKQLLEARLGLNFEQFTRAVMLAQSEFSAFLKADDNERSELLEKLTDTALYTRLGKRAFEKSRDAREQLKHWQDQATGIAPLAAEAREALDLEFHTASEQLRQHQAHLKQVEQQQQWHCEDRRLSDDCQAARQQVQDASQAWEAGAEQRLQLHMLEQLAPQRHLFSRQHELQTQLQPLAERIEQARAQQVQQQVQREQLDVQREQTGHQLQQALAQQAEAQPLLQQAFDAQSNRGRLHTEIEPLRPALAEAERQLSAGQQALHVMEQQQAGSGERLQQVAEALERSAELAPLAGTWGAYLPRLQQVVTLSSRLRQGQAELPALQTQAHTTRTSLAEHESDLARVFQNAPCSAEQLPERVQQLTQRLQQQHQELRAVQELERLWQRRSAIEERLEQGRQQQASLLARREQLTAQGLEVRAAHEQAEQALKVTLQLLERQRLARSESVEQLRERLQPEQPCPVCGSVEHPYHAPEALLQALSAHDDDEEQRARAALKPVSERLVELRTEVGALIEQHKQLKAQEQQWLDQPGDAELARHPLYPALCDAEQPADWLCDTLAGHTRSIDEDERQQNSLLALQQQASALQRAVAQAREASQQAQQLLQAHQAHLDADQQRLDEELQALASQLPAARLQALREHPAQTFMALEQSIGERLAQIEQRDEEQGEFDARARRIEQARSEHARHQTDCEQQRQRVQALSAQLQTCEARLRELLGEHAQASAWQTALHDQVEMARDQERQTDRQQQDLRTRTVQTASALEADTAQQAQLQQTLADVEQALHAWREQRPQLEDDGLQALLAIDEPQVDELRSRLQSTEKALEQARIRLHEREQRQQSHRTQVDAIASVEALDAQHAALLMDVERQEHHCAELRARQAEDQRRHSANHALQTQIAEADAHYQRWARLAALIGSAEGDRFRKIAQAYNLDLLVHHANVQLRQLVRRYRLKRGGSMLGLLVLDTEMGDELRSVHSLSGGETFLVSLALALGLASMASSTLRIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIQVRRLGNGLSSVEVSG
>NZ_CP009533.1|WP_052393205.1|370407_371565_+|lactonase-family-protein
MKRVLLSMLVNGLALTSLHAGAAEKYDLLVGTYTQGASEGIYRYAFDSATGQIEAQPRQTVKSSNPSWLTLSQDQRRLFVVNENGPGQKEVIGKVTSFTVDGKTHDLHQVNQVATSGDEPTHSSLSQDGRHLFVANYAVSANPGGSLSVLKVAEDGTLSNVVQELKHVASQVNPERQAGPHVHSVVSLPSGGYVYASDLGADRVYVYRYQPESAERPLVPAQPASVQLPDGSGPRHLLFSRDGKHAYLTLEMSGQLAMFDVKDGNLVRQQLLELGTVGKESASGALHLSADGRFLYVSNRGTANQMLVFSVASGNGQLKEIQRRQVDGDHPREFALDPTGHFLLIANQKSNQITVLKRDAGTGMLGETVQSFKQDAPSDLKFLTQ
>NZ_CP009533.1|WP_043185683.1|369997_370303_+|DUF5629-family-protein
MVRHHPGGPTMTLPSALETCDMLLIDTLHAFDFSIDEQQTLHVQCMDGRELKRWQFTLQEQQAAQPGAEPNSFVVDHAGTSHQLICLSAFSAREEEDETQT
>NZ_CP009533.1|WP_043193238.1|384895_385174_+|hypothetical-protein
MKAWICVPLVALALSGCAGKTAYRDSCATQLDGAWHELDLAKAEGLAGTVSYSKALSLLTGAKTQQQFEAFEGCTNKAEKARFYIRESRAGR
>NZ_CP009533.1|WP_043185699.1|385254_386172_+|AAA-family-ATPase
MRSRLDECLQAVNEVLLGKETQVRLALTCLIADGHLLIEDLPGMGKTTLSHTLAKVLGLSFQRIQFTSDLLPSDILGTSVFDKDSGRFVFHPGPIFAELVLADEINRATPKSQSALLEAMEEGQVTIEGATRPLPQPFFVIATQNPTTQGGTFALPESQLDRFLMRLSLGYPAKAAEKALLMGEARRDLLPRMSAVLDHAQLSALQAQARAVRASDALVDYVLRLVEATRTQPQFAYGLSPRGSLALLAAAKAWALLLDRDYVIPEDVQAVLPSVVSHRLRERADPTGQGGGALVQWLLREVPAL
>NZ_CP009533.1|WP_043185701.1|386141_387125_+|DUF58-domain-containing-protein
MAAAGGACAVRRRLGEHWRRWQARRLPTAPRIELDQRRIFIVPSRSGIGFIVVLLLIFLAAINYQNSLAYALVFLLSSVFVVAILHTYRNLSGLLVSGNGATSVFVGEQARFGLRLESGGKEHQAIGVGWNAQQLQRSDVAPDHVQALELSLPTERRGWLPAPRMRVETSFPLGVLTAWTWVDLGQRVLVYPQPLQGEVPNLHSESADIEDQAQRLHGQGVDDFQGLKQYQPGDSWRRMHWKAYSRGEGLLVKDFADLRGQELCLDFVALGGDVEQRLSRLCYWVLALSREQRPFALQLPGNRLDTDSGDAHREACLRALALFGEQP
>NZ_CP009533.1|WP_043185705.1|387121_389107_+|DUF3488-domain-containing-protein
MSTAAAIPRVSLTWLLLAQSLVLLPLWWHVPLWLLVLWLGCTLWRVQVFRMRARYPGRLIKLALMLAVAAGVYLSSGTWVGLEATAALLVAAFLLKLLEMQSARDARVVIFLGLFCLAVAYLFDASLGWALYSVLPLLALLAALIGLQQTQLIAQPMATLKLASSLVLQALPLMLLLFVFFPRLEPLWSLPLPKPGQGVTGLSESMSPADVASLSQSGEVAFRASFDGAIPAKRDLYWRALSLDVYDGRTWSQSPWIQTQLAAQWQPTGPSLTYQVIQQPSGKPWLFALDVARTASPGVRQLSDGRLQRRRPVDQPLMYAVTSWPQVLREPQLSAPALRTALLLPAQGDPRTRQWAQDLRARFTTAPALVNEMLRQFRELPFHYTLNPPVLGRESIDEFLFDSRRGFCAHYAGAMVYALRVAGVPARVVAGYQGGEVNPAGNYLTVRQFEAHAWVEYWQSGIGWQRADPTAAVAPARVEQGLQQALSADEEFLAGSPFSPLRYPQLTWLNDLRLQWDNLNYGWQRWVLEYQGERQIEFLARWFQGLQRWALPVGGLLFMVLASVWLLKPWRHRVDPQLKDFVAFERLLRRRGIVRQTGEGAMAFAERAAAQLPSQSEAILKFAYAFMAQRYAGRPVSREQLRAALATLRRQLARRPGNMPR
>NZ_CP009533.1|WP_043185707.1|389218_390013_+|thioesterase-family-protein
MNLHDLLASARRPPHSVTVPREWSQGRACYGGLMAALLHEAMAAHVPDRPVRSMAITFVGPAELEVPIDLQVEILREGSAVTSVLARAVQGGRTMTVVQASFGLARESAISISAMPVAAMKPLAESTALPYLPGVTPEYIRHLDMRWGIGALPFSNTPVAGIGGWVQLRDHDRDEPITEALLLVLGDAWPPALLPYLSQPAPGSSLTWTIEFIQPMPALRSLEWCRYQAVIEHARDGYGHTSAAMWNPEGELLAISRQTVTVFG
>NZ_CP009533.1|WP_043185709.1|389981_390212_-|hypothetical-protein
MNDMNALSIINDPNNGIRVSRAIALPLLALSALMLVDAAACSSIAEAAIGVIGLVAAFALGRPQHALSQTPSPSVG
>NZ_CP009533.1|WP_052393209.1|390367_391213_-|TatD-family-hydrolase
MQLIDIGVNLTNDSFAQKHEAVLQRAYDAGVFQLVLTGTSVEGSEQALQLCRQWDESGERLFATAGIHPHSASEWNGDSATCLRDLLGQPQVKAVGECGLDFNRDFSPRPQQEKVLHEHLALAVELQLPVFLHERDAHQRLLDIVKDYRDHLPAAVVHCFTGERQALFGYLDLDLHIGITGWICDERRGTHLHPLVGSIPASRLMLESDAPYLLPRTLRPKPKSGRNEPAFLTEVLREVALHRGESQVELAASTTACARAFFGLPEISAAASALYDADSEA
>NZ_CP009533.1|WP_043185712.1|391334_392756_+|transglycosylase-SLT-domain-containing-protein
MGLRSLIVALCLALVLPSAAAARPAGPPLAAHPTKVRDLAQIQSSRVLRVLVNQSRNSSGQVRGQAIGVEYHRLQAFQSYLNSHAGKGQALQLKIIPRAKEQLLGALQRGEGDLVAPGELMELHPTSKVAASDAVIANVPFVLVSGKGGRRPVRVEQLAGKTLALPNGSAAGAAIERLNQKLALRKLAPIDIEWVDPSLAVEDVLEMVQAGIYPLTVVELPIAERWAKVMPRLRVDRRVVLSAPGSVSWYVRRDAPQLGASVDRFLASYKAPSDQDAAFVKVYRGLYKVHYPLARSDRQRLEKLRPVLQRHAREQHMDWLNLAALAFKESKLDPAARGGSGATGLLQITPAAARRVGVGNIQNVDNNVQAGAKYLAMIRRKFFSSNKLNERERMAFTLAAYNMGPERVQAMRKEARRRGLNPDQWFFQTERIAMEQMGMAAVSYVNSVNKYYLAFARERDSLEPGARKLASAR
>NZ_CP009533.1|WP_043185715.1|392826_393303_+|transcription-elongation-factor-GreB
MATNIITREGHEALRSELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYLRKRLEDVRVVDYSPEQEGRVFFGAWVEIENDAGETKTFRIVGYDEIYGRNDYISIDSPMARALLKKQEGDEIVVQIPDGEALWYINQIRYKPV
>NZ_CP009533.1|WP_043185718.1|393499_393808_+|hypothetical-protein
MNCPRPIVCLAPIPASPSLRNPRILLVGQHQPNLLRSLDGWPRRRGKPGAFVARFIDQHSALKNLPDNSFELAVIQAPSAQDAHEVIAHAVRIARQGLITLR

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Crispr_ID: NZ_CP009533_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009533_2

802698-802809

Orphan

Consensus_repeat	Method
TAGCAGCGGCGCAAGCCGCGTCGGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009533_2

>merge|NZ_CP009533|2|802698-802809|CRISPRCasFinder
TAGCAGCGGCGCAAGCCGCGTCGGCGGACAAGGTGATCTGCCTGACCCTACGCGGCGAGGCCGGCACGAATATACGCAATCCCCATAGCAGCGGCGCAAGCCGCGTCGGCGG

>NZ_CP009533|2|2|802698-802809|CRISPRCasFinder
TAGCAGCGGCGCAAGCCGCGTCGGCGG	ACAAGGTGATCTGCCTGACCCTACGCGGCGAGGCCGGCACGAATATACGCAATCCCCA
TAGCAGCGGCGCAAGCCGCGTCGGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009533.1\|WP_043186627.1\|801821_802571_+\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NZ_CP009533.1\|WP_043186602.1\|789280_790291_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182834
NZ_CP009533.1\|WP_008371426.1\|811432_812470_+\|rod-shape-determining-protein-MreB	unknown	unknown	gnl\|CDD\|237562
NZ_CP009533.1\|WP_043186621.1\|799850_801110_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP009533.1\|WP_043186612.1\|793576_795175_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173858
NZ_CP009533.1\|WP_043186646.1\|808013_809459_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NZ_CP009533.1\|WP_043186638.1\|805073_806426_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182324
NZ_CP009533.1\|WP_043186624.1\|801106_801667_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|226933
NZ_CP009533.1\|WP_043186652.1\|810939_811227_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_CP009533.1\|WP_043193275.1\|806433_807459_-\|calcium/sodium-antiporter	unknown	unknown	gnl\|CDD\|273039
NZ_CP009533.1\|WP_043186649.1\|809470_810922_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NZ_CP009533.1\|WP_043186614.1\|795382_796984_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173858
NZ_CP009533.1\|WP_043186633.1\|804086_805028_+\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NZ_CP009533.1\|WP_043186629.1\|802964_803876_+\|5-dehydro-4-deoxyglucarate-dehydratase	unknown	unknown	gnl\|CDD\|235141
NZ_CP009533.1\|WP_043186608.1\|792035_793415_-\|OprD-family-porin	unknown	unknown	gnl\|CDD\|335381
NZ_CP009533.1\|WP_043186605.1\|790367_791963_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173858
NZ_CP009533.1\|WP_043186616.1\|797240_798842_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173858
NZ_CP009533.1\|WP_084139712.1\|812606_813668_+\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NZ_CP009533.1\|WP_084139711.1\|807516_808014_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NZ_CP009533.1\|WP_043186618.1\|798939_799650_-\|SIMPL-domain-containing-protein	unknown	unknown	gnl\|CDD\|226002

Protein	Function_ID	Function_description	E-value
NZ_CP009533.1\|WP_043186627.1\|801821_802571_+\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	4.06782e-56
NZ_CP009533.1\|WP_043186602.1\|789280_790291_-\|ABC-transporter-permease-subunit	gnl\|CDD\|182834	PRK10914, PRK10914, dipeptide ABC transporter permease DppB.	5.60866e-166
NZ_CP009533.1\|WP_008371426.1\|811432_812470_+\|rod-shape-determining-protein-MreB	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_CP009533.1\|WP_043186621.1\|799850_801110_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.5968e-33
NZ_CP009533.1\|WP_043186612.1\|793576_795175_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173858	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP009533.1\|WP_043186646.1\|808013_809459_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NZ_CP009533.1\|WP_043186638.1\|805073_806426_+\|amino-acid-permease	gnl\|CDD\|182324	PRK10238, PRK10238, aromatic amino acid transporter AroP.	0
NZ_CP009533.1\|WP_043186624.1\|801106_801667_+\|response-regulator-transcription-factor	gnl\|CDD\|226933	COG4567, COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription].	1.1961e-92
NZ_CP009533.1\|WP_043186652.1\|810939_811227_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	1.23574e-36
NZ_CP009533.1\|WP_043193275.1\|806433_807459_-\|calcium/sodium-antiporter	gnl\|CDD\|273039	TIGR00367, Uncharacterized_membrane_protein_MJ0091, K+-dependent Na+/Ca+ exchanger related-protein. This model models a family of bacterial and archaeal proteins that is homologous, except for lacking a central region of ~ 250 amino acids and an N-terminal region of > 100 residues, to a functionally proven potassium-dependent sodium-calcium exchanger of the rat. [Unknown function, General].	2.33328e-67
NZ_CP009533.1\|WP_043186649.1\|809470_810922_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NZ_CP009533.1\|WP_043186614.1\|795382_796984_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173858	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP009533.1\|WP_043186633.1\|804086_805028_+\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	2.71592e-45
NZ_CP009533.1\|WP_043186629.1\|802964_803876_+\|5-dehydro-4-deoxyglucarate-dehydratase	gnl\|CDD\|235141	PRK03620, PRK03620, 5-dehydro-4-deoxyglucarate dehydratase; Provisional.	0
NZ_CP009533.1\|WP_043186608.1\|792035_793415_-\|OprD-family-porin	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	4.23052e-148
NZ_CP009533.1\|WP_043186605.1\|790367_791963_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173858	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP009533.1\|WP_043186616.1\|797240_798842_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173858	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP009533.1\|WP_084139712.1\|812606_813668_+\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	9.23965e-102
NZ_CP009533.1\|WP_084139711.1\|807516_808014_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	1.26474e-48
NZ_CP009533.1\|WP_043186618.1\|798939_799650_-\|SIMPL-domain-containing-protein	gnl\|CDD\|226002	COG3471, COG3471, Predicted periplasmic/secreted protein [Function unknown].	9.11873e-69

>NZ_CP009533.1|WP_043186627.1|801821_802571_+|FadR-family-transcriptional-regulator
MDTQSAAPRARRKPRSLAQELVAVLTQRILDGQLKRGDKLPTESAIMEEQGVSRTVVREAISRLQAAGQVETRHGIGTFVLDTPSPSGFRIDPATIVTLRDVLAVLELRISLEVESAGLAANRRSPEQLAAMRAALDALNESAAHASDAVASDFQFHLQIALSTGNRYFTDIMTHLGTSIIPRTRLNSARLAHDDQQHYMTRLSREHEEIYDAIARQDADAARAAMRLHLTNSRERLRQAHQEAEASGV
>NZ_CP009533.1|WP_043186624.1|801106_801667_+|response-regulator-transcription-factor
MTDEHQVEGEELPHLLLVDDDATFTRVMARAMSRRGFRVSTAGSAEEGLKLAQDDVPDYAALDLKMDGDSGLVLLPKLLELDPEMRVVILTGYSSIATAVEAIKRGACNYLCKPADADDVLAALSAEHADLDTLVPENPMSVDRLQWEHIQRVLTEHAGNISATARALGMHRRTLQRKLQKRPVRR
>NZ_CP009533.1|WP_043186621.1|799850_801110_+|HAMP-domain-containing-histidine-kinase
MLAHPMPLSASRQNLWRLTFIRTLVLAAQAGSVGFAYLTHLLPLPWLALSTTLAVSAILCALTVLRLRFSLPVTELEYALQLACDLLIHSVLLYYSGGGANPFVSYYLVPLTIAAVTLPWVYSLVLSGIALACYTFMLAHFYPLDALPIGRENLQIYGMWLSFALAASVITFFAAKMAEELRRQERLRAQRREEGLRDQQLLAVATEAAGAAHELGTPLATMSVLLKEMRQDHPQPELQEDLQVLQDQVKLCKETLQQLVRAAEANRRMAVVDQPVTAWLDEALNRWHLMRPESSYRFHRVGQGEVPHLAPPPDLTQALLNLLNNAADACPDNLEVKLDWDSEDIFIVIRDHGAGVPLAIAEQIGKPFFTTKGKGFGLGLFLSKASVTRAGGSVKLYSHEEGGTLTELRLPRGVRGDDQ
>NZ_CP009533.1|WP_043186618.1|798939_799650_-|SIMPL-domain-containing-protein
MPVITRSAALVLGASLLSSLPALADEARYNQISLRAEVSQEVPRDLMLVTLYSEEQNADPAKLAAGISDTLNKALAQAREVKGVIVRQGSRNSYPIYDDKGQTITGWRERAEVRLESADFPALSKLTGELLQSLKMGAMDFSIADKTRKQSEDALLKEAVAAFKARAQLATDALGGKSYKVVNLNLNSAGYPRPYASAPMMMKAARADAAPVTPDVEAGTSEVSINADGVIEVMMP
>NZ_CP009533.1|WP_043186616.1|797240_798842_-|ABC-transporter-substrate-binding-protein
MDIPAFKPLLLTAALCAGMPMAQAASTLVYCSEASPAGFDPSQYTSGTDFDASAETVFNRLTQFKRGGTEVEPGLATSWDVSPDGLTYTFHLREGVKFHTTDYFTPSRDFNAGDVLFTFQRLLDPEHPFRKAYPSESPYFTDMGLNTNIKSVSKQDEHTVMFTLNTVDAAFVQNLAMSFASVQSAEYADQLLKQGKAADINQKPIGTGPFVFKRYQKDSQIRYTANKAYWKPEDVKLDNLIFSISTDAAVRLQKLKAGECQVSGYPRPADIDVMKQDPNLRVLSQPGFNLGFLAYNVTHPPLDQLKVRQALDMAIDKPAIIKAVYQSAGQLAQNALPPAQWSYDTRIKDAPHDITKARALLKEAGIKEGTTIDLWAMTVQRASNPNARMSAQMIQNDWAKIDIKANIVSYEWGEYIKRAKNGEHDTMIYGWTGDNGDPDNWLGVLYSCAAVKGSNYAKWCDPAYDKLIQQAKLSSDRDERVKLYQQAQAILKQQVPITPIANSTVFQPMRKEVQDFRISPFGLTPFYGVSLSQ
>NZ_CP009533.1|WP_043186614.1|795382_796984_-|ABC-transporter-substrate-binding-protein
MLKTAVIPFIVGAGLLASAPFAHAASNLVFCSEGSPAGFDPALYTSGTDFDASAETIFNRLSQFERGGTAVIPGLATSWDISEDALTYTFHLREGVKFHTTDYFKPSREFNADDVLFTFNRMIDKNMPFRKAYPTEFPYFTDMGMDENITNIEKLDDHTVRFTLKTVDAAFIQNMAMSFASIQSAEYAAQLLKQGKAADINQKPIGTGPFVFNRYQKDAQIRYKGNKDYWNPDDVKIDNLIFAITTDASVRMQKLKKNECQVSVYPRPADLKPLKEDKKLQMPDQAGFNLGYIAYNVTHEPLGNLKVRQALDMAVNKQSIIEAVYQGAGQLAVNAMPPTQWSYDTSIKDAGYNVEEAKKLLKEAGVKEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAKVGIKAKIVSYEWGEYLKRAKAGETDAMLIGWSGDNGDPDNWLGTLYGCDAVNGNNFSKWCDKDYDQLIKTAKATPDQAKRTELYKQAQVRLKEQVPITPIAHSTVYQPMSAKVTDFKISPFGLNSFYGVGVKD
>NZ_CP009533.1|WP_043186612.1|793576_795175_-|ABC-transporter-substrate-binding-protein
MRHTQLCSAMLALGLLGQVGLSQAANSLVYCSEGSPAGFDIAQYTSGTDNDASQPIYNRLTEFEKGGTSVIPALATKWDISEDGLTYTFHLREGVKFHSNEAFKPTRDFNADDVLFTFNRMLDSNQPFRKAYPTEFPYFVSMSLDKNIAKVEKTDDHTVVFTLNAVDAAFVQNIAMNFASIQSAEYAEQLLKSGNMRDINQKPIGTGPFAFQRYQKDSQIRYKANPQYWDMSQVKVDQLIFAINTDASVRMQKLKKNECQVTAYPRPADLAGLKADPKLKVMEQAGYNLGYITYNVRHKPFDQLEVRQAMDMAVNKDAILKAVYQGAGQKAVNAMPPTQWSYDESIKDAPFDPEKAKQMLQAAGVKEGTEITLWAMPVQRPYNPNAKLMAEMLQADWGKIGLKVKIVSYEWGEYLDRTKRGEHDVSLIGWTGDNGDPDNWLGTLYSCDAIGSNNYSMWCNQDYDKLVQQAKRVTDREERSVLYRQAQQLLKQQVPITPIAHSTVNQPVSVKVDGFKVSPFGRNDFGGVSVRD
>NZ_CP009533.1|WP_043186608.1|792035_793415_-|OprD-family-porin
MKITKRAVFTLSLSGFAPLVLADEASQAFIPLTVKTSSAQDEAKGFIEDSSVTGSTRNWFAKEKGKRGLTWGINKGNGVTERTGSRDTWVQGTIVNYTSGFTQGTVGLSTEVAAYNTVALEQGKGRVAGGGNRTLTDHNGEAVDQWTKAGLANLKARVSNTVLTAGRQSMNTPVLAFIGNRALPSSFEGVSLHSAEFDNLDFDLGTFSRVSPRTEQSLSKFRTEYGNGTTTDQVNIFGLNYQPLKSLTTSLYASNVKDVWNQYYFGASHELGDASVLGLTTGFNYYKTKDAGSSKMGAIDNDTYSLSLTATHKAHSLTLAFQEVRGDEYFDYLHETNAIFLANSLFSDYNGPNEKSFQVGYGLDMAGYGVPGLKFSVYTARGWGIDGTHYKGGGYDGIQAQDGESHYEYGFGTSYAVQSGPLKASTVRATYSAHRASANQVDGSLNELRVVTTIPFQIL
>NZ_CP009533.1|WP_043186605.1|790367_791963_-|ABC-transporter-substrate-binding-protein
MKTLSLKAAVAAALLGLSLGASAKPLVVCTEASPEGFDIVQYTGAVTSDASAETVLNRLVDFTPGTTDIQPGLAKSWDISEDGKTYTFHLREGVKFHTTEYFKPTRTLNADDVLWSFMRQFDAKHPWHDKSTMGYPYFESMAMGDLIQSIDKLDDMTVRFVLKRPEAPFLRDMAMPFTSIYSAEYGDQLLKAGKTADLNSKPIGTGPFVFVRYSKDAQVRYKANPDYYKGKPPADPLIFAITVDNNVRAQKLRANECQVAVYPKPDDVPGIKADPQLKIAEMDALMTSYVAINTTHKYLSDVRVRQAIQMAFDKQTFVRTLFGEGNATPGVGPYPTTLLGYNHSLKDLPYDPDKARALLKEAGVPEGTSFTIFARNGSSPTNPNSSLAAQLLQADLARVGIKLDIRVLEWGELIKRLKLGEHDLAFYGWAGDNGDPDNFLSPNLTCEAAKNGENAARWCNKEFDALVSQAREATEPAARAAFYEQAQVIFLKEQPWLSLAYPRVFSAMRKNVEGFHISPMTNNNFATTQVK
>NZ_CP009533.1|WP_043186602.1|789280_790291_-|ABC-transporter-permease-subunit
MFSFIARRVGLLIPTFFGITLLTFALIRLIPGDPVEVMMGERRVDPEMHAQAMERLGLNKPLYAQYLDYIGNLAQGNLGESLRTRESVWTEFTALFPATLELSIAALIFAGVLGLLAGVIAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVTLGWTPVSGRIDLLYDIQPKTGFMLIDTLLSDDEGAFWDALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYVRTARAKGLSPARVVFVHGLRNALIPVLTVFGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDYPVVQNGILLIACLVILVNFVVDILYGLANPRIRHQR
>NZ_CP009533.1|WP_043186629.1|802964_803876_+|5-dehydro-4-deoxyglucarate-dehydratase
MNPQELKSILNHGLLSFPVTDFTAQGDFHREGYIKRLEWLAPYGASALFAAGGTGEFFSLAASEYSQVIKTAVDTCATSVPILAGVGGSTRQAIEYAQEAERLGAKGLLLLPHYLTEASQDGVAAHVEAVCKSVNIGVIVYNRNVCRLNAPLLERLAETCPNLIGYKDGLGDIELMVSIRRRLGDRFSYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAMDFYHAIAAEDHVTVGKLIDDFFLPYLDIRNRKSGYAVSIVKAGAKIAGYDAGPVRTPLTDLTGEEYEMLAALMDKMGPQ
>NZ_CP009533.1|WP_043186633.1|804086_805028_+|AEC-family-transporter
MLALFLQTLNVTAPVFAMLFLGYGLKRIEWINDNFIKTASALVFNVCMPSLLFLGIYHADLRSALKPGLLVYFVVATVGSFAIAWWIATKRCPEVDRGVFTQGAFRGNNGVIGLALAGSMYGDYGISLGSILAGLVIVLYNSLSVVVLAIYSPNIKSDPLSICKSILVNPLIISVALAVPFAWLQVPIPNWILTSADYVAQMSLPLALICIGGTLSLAALRSSGSVALSASAVKMILLPIVGTFGAWLLGFRGAELGILFLYIGAPSASVGYVMVRASGGNYSLAAAIIVITTLAAAITTNIGIFLLQWGGWI
>NZ_CP009533.1|WP_043186638.1|805073_806426_+|amino-acid-permease
MDDQSTPEGLHRGLKNRHIQLIALGGAIGTGLFLGIAQTIGMAGPSVILGYAIGGLIAFFIMRQLGEMVVEEPVTGTFSHFANRYWSGLAGFMSGWNYWVLYVLVGMAELTAVGIYIKYWWPDVPTWASAAVFFVLINAINMFQVKIYGEMEFWFSLIKVAAIVSMIGFGAWMLATGNGGPDASVANLWQYGGFFPNGIGGLTLAMAVIMFSFGGLELVGITAAEADDPKRSIPKATNQVIYRILLFYVGALTILLSLYPWQKVVEGGSPFVMIFHALDSNVVATVLNVVVLTAALSVYNSCVYCNSRMLFGLAVQGDAPKTLLKVNRRGVPMKALGISALATGLSVLINYLMPGEAFGLLMALAVSALVINWGIISITHLKFRKAMRANAHATFFPSWGYPITNWVCLLFLAGILVIMYMTPGIRISVLLIPVWLGVLALAWVVKKRRG
>NZ_CP009533.1|WP_043193275.1|806433_807459_-|calcium/sodium-antiporter
MLAGLVLLIAGAEWLVRGAVRLAAALKVRPLVVGLGVVALGSSAPQLAVSLQATYVGTPDIAVGSLVGSNIFSLLVTLGLSALIIPLRVSRQLLRLDIPLLIAASALVFGLALNEQLGRLEGSILLLALVGYLGVLWRQSRHPGRVASTQGTAPWLKCLGMMLGGLLLLVAGSHWLLEAALELATDFGLSDRVIGLTIVAVGTSLPELATSLVAAMRGHREIAVGNVIGSNLFNLLGVLGLTALLAPAPLSVSPNALDFDLPVMLGVTLLCLPLFYSGYRVTRIEGLVLLGLYVAYGLHVVAFTTGMPLAARLEELMLFYVLPVLAAVVLWGTVRAWRRQH
>NZ_CP009533.1|WP_084139711.1|807516_808014_-|septal-ring-lytic-transglycosylase-RlpA-family-protein
MQQHTPCSSGASRVRRRRGDSNGSRIPLTRLAPLLRGACSFGRHVVCAGAIALLAGCASSNGIIDPRGYDRDGVASYYGARHHGARTASGERFDQHGLTAAHRQLPFGTRVVVTNLANQRNVIVRINDRGPHSRGRLIDVSKGAAEKLGMLRSGTARVRVQTLQD
>NZ_CP009533.1|WP_043186646.1|808013_809459_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MQWEVVIGLEIHTQLATQSKIFSGSSTTFGSEPNTQASLVDLGMPGVLPVLNQEAVRMAVMFGLAIDAEIGQHNVFARKNYFYPDLPKGYQISQMELPIVGKGHLDITLEDGTVKRIGVTRAHLEEDAGKSLHEDFSGSTGIDLNRAGTPLLEIVSEPDMRSAKEAVAYVKAIHALVRYLGICDGNMAEGSLRCDCNVSIRPKGQVEFGTRCEIKNVNSFRFIERAINSEIARQIELIEDGGKVIQQTRLYDPNKDETRAMRSKEEANDYRYFPDPDLLPVVIEDSFLETTRATLPELPPAKRERFQREFGLSAYDASVLASSREQADFFEQVVASCGDAKLAANWVMVELGSLLNKQGVEIEESPVSAAQLGGMLQRIKDNTISGKIAKMVFEAMANGEGDADQIIEARGLKQVTDSGAIEKVLDEVLAANAEQVEQYRAADEAKRGKMFGFFVGQAMKASKGKANPQQVNELLKSKLAG
>NZ_CP009533.1|WP_043186649.1|809470_810922_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MHQLTLAEIARGLADKKFSAEELTRTLLARIAQLDPQLNSFITVTPEHAIAQAQAADARRANGESGALLGVPLAHKDLFCTQGIRTSCGSKMLDNFQAPYDATVVAKLNAAGAVTLGKLNMDEFAMGSANENSHYGAVKNPWNLAHVPGGSSGGSAAAVAARLLPVATGTDTGGSIRQPAAFTNLTGIKPTYGRVSRWGMIAYASSLDQAGVLARNAEDCALLLQGMAGFDPQDSTSIDEPVPDYSATLGDSLQGLRIGVPKEYFGAGLDPRIAERVQASIEALEKLGAVIQPISLPNMQQAIAAYYVIAPAEASSNLSRFDGVRFGYRCENPKDLTDLYKRSRAEGFGPEVQRRIMVGAYALSAGYYDAYYLQAQKIRRLIKNDFMAAFEDVDMILSPTTPNPAWKLGAKNADPVAAYLEDIYTITANLAGLPGLSMPAGFVDGLPVGVQLLAPYFQEGRLLNAAHQYQQVTDWHTRAPEGF
>NZ_CP009533.1|WP_043186652.1|810939_811227_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MALERCDVEKIAHLARLGLNDADLPRTIEALNSILGLVDQMQAVDTRGIEPLAHPLEASQRLRADQVTERNQRDAYQAIAPAVENGLYLVPKVIE
>NZ_CP009533.1|WP_008371426.1|811432_812470_+|rod-shape-determining-protein-MreB
MFKKLRGMFSSDLSIDLGTANTLIYVRERGIVLNEPSVVAIRTHGNQKSVVAVGTEAKRMLGRTPGNIAAIRPMKDGVIADFSVCEKMLQYFINKVHENSFLQPSPRVLICVPCKSTQVERRAIRESALGAGAREVFLIEEPMAAAIGAGLPVEEARGSMVVDIGGGTTEIALISLNGVVYAESVRVGGDRFDEAIVTYVRRNYGSLIGESTAERIKQEIGTAYPGGEVREVDVRGRNLAEGVPRAFTLNSNEVLEALQESLATIVQAVKSALEQSPPELASDIAERGLVLTGGGALLRDLDKLLAQETGLPVIVAEDPLTCVARGGGRALEMMDKHTMDLLSSE
>NZ_CP009533.1|WP_084139712.1|812606_813668_+|rod-shape-determining-protein-MreC
MKPLFTKGPSLGVRLLVLVVLSIALMVVDARFTLLKPVRSEMSLVLMRAYWVTDLPQRLYEGVASQFGSRTELLAENEKLKTEGLLLQGRLQKLAALTEQNVRLRELLNSSALVNEKVEVAELIGMDPNPFTHRILINKGERDGVVLGQPVLDARGLMGQVVELMPYTSRVLLLTDTTHSIPVQVNRNGLRAIASGTGNPERLELRHVADTADIKEGDLLVSSGLGQRFPAGYPVATVKEVIHDSGQPFAIVRAVPTAALNRSRYLLLVFSDSRSPEQRATEAAQAQEAADRQGAAPEASAQATPATAPTTAPAAATPAAAAPARSTAPATTPAHTTPATPSRSAPATSRERQ

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Crispr_ID: NZ_CP009533_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009533_3

1210573-1210729

Unclear

Consensus_repeat	Method
GGAGCGGTCATCGGCCGCGAAGGGCGCACCGCGTAGTGCCTGGCACACCGC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP009533_3

>merge|NZ_CP009533|3|1210573-1210729|CRISPRCasFinder
GGAGCGGTCATCGGCCGCGAAGGGCGCACCGCGTAGTGCCTGGCACACCGCGGCGCCTGCTTCGCGGCCACGGACCGCTCCTACAGAAAGGCACTGGCACCCCGTAGGAGCGGTCATTGGCCGCGAAGGGCGCACCGCGTAGTGCCTGGCACACCGC

>NZ_CP009533|3|3|1210573-1210729|CRISPRCasFinder
GGAGCGGTCATCGGCCGCGAAGGGCGCACCGCGTAGTGCCTGGCACACCGC	GGCGCCTGCTTCGCGGCCACGGACCGCTCCTACAGAAAGGCACTGGCACCCCGTA
GGAGCGGTCATTGGCCGCGAAGGGCGCACCGCGTAGTGCCTGGCACACCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009533.1\|WP_043187397.1\|1214454_1214847_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009533.1\|WP_043187390.1\|1211520_1212786_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NZ_CP009533.1\|WP_043193327.1\|1199907_1200420_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|182018
NZ_CP009533.1\|WP_043187386.1\|1211043_1211316_+\|DUF3077-domain-containing-protein	unknown	unknown	gnl\|CDD\|371447
NZ_CP009533.1\|WP_052393255.1\|1197633_1197957_-\|putative-addiction-module-antidote-protein	unknown	unknown	gnl\|CDD\|188241
NZ_CP009533.1\|WP_043187404.1\|1218152_1218908_-\|DeoR/GlpR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182827
NZ_CP009533.1\|WP_043187401.1\|1216301_1217840_-\|glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237027
NZ_CP009533.1\|WP_043187392.1\|1212970_1214314_+\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|223587
NZ_CP009533.1\|WP_043187407.1\|1220601_1221441_-\|aquaporin	unknown	unknown	gnl\|CDD\|238204
NZ_CP009533.1\|WP_043187383.1\|1208403_1210284_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP009533.1\|WP_084139718.1\|1201429_1203862_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273805
NZ_CP009533.1\|WP_043187373.1\|1204002_1205946_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP009533.1\|WP_043187379.1\|1207332_1207761_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|379639
NZ_CP009533.1\|WP_084139717.1\|1198560_1199748_+\|sugar-transporter	unknown	unknown	gnl\|CDD\|179591
NZ_CP009533.1\|WP_043187381.1\|1208038_1208320_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009533.1\|WP_043187399.1\|1215023_1215950_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP009533.1\|WP_043187367.1\|1200413_1201364_+\|FecR-domain-containing-protein	unknown	unknown	gnl\|CDD\|236622
NZ_CP009533.1\|WP_043193328.1\|1219045_1220548_-\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|234594
NZ_CP009533.1\|WP_148308601.1\|1197953_1198259_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|162974
NZ_CP009533.1\|WP_043187409.1\|1221737_1222208_+\|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl\|CDD\|237976

Protein	Function_ID	Function_description	E-value
NZ_CP009533.1\|WP_043187390.1\|1211520_1212786_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	1.61268e-28
NZ_CP009533.1\|WP_043193327.1\|1199907_1200420_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|182018	PRK09651, PRK09651, RNA polymerase sigma factor FecI; Provisional.	5.72205e-62
NZ_CP009533.1\|WP_043187386.1\|1211043_1211316_+\|DUF3077-domain-containing-protein	gnl\|CDD\|371447	pfam11275, DUF3077, Protein of unknown function (DUF3077). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	5.2128e-12
NZ_CP009533.1\|WP_052393255.1\|1197633_1197957_-\|putative-addiction-module-antidote-protein	gnl\|CDD\|188241	TIGR02684, conserved_hypothetical_protein, probable addiction module antidote protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the downstream member of a gene pair. It is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, are located often with prophage regions, but also both in integrated plasmid regions and in housekeeping gene regions. Analysis suggests that the gene pair may serve as an addiction module. [Mobile and extrachromosomal element functions, Other].	1.34336e-38
NZ_CP009533.1\|WP_043187404.1\|1218152_1218908_-\|DeoR/GlpR-family-transcriptional-regulator	gnl\|CDD\|182827	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator.	5.75958e-111
NZ_CP009533.1\|WP_043187401.1\|1216301_1217840_-\|glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|237027	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed.	0
NZ_CP009533.1\|WP_043187392.1\|1212970_1214314_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	3.72163e-132
NZ_CP009533.1\|WP_043187407.1\|1220601_1221441_-\|aquaporin	gnl\|CDD\|238204	cd00333, MIP, Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.	1.71949e-71
NZ_CP009533.1\|WP_043187383.1\|1208403_1210284_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	2.75945e-78
NZ_CP009533.1\|WP_084139718.1\|1201429_1203862_+\|TonB-dependent-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.11111e-90
NZ_CP009533.1\|WP_043187373.1\|1204002_1205946_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	3.93104e-70
NZ_CP009533.1\|WP_043187379.1\|1207332_1207761_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|379639	pfam14534, DUF4440, Domain of unknown function (DUF4440).	1.62016e-20
NZ_CP009533.1\|WP_084139717.1\|1198560_1199748_+\|sugar-transporter	gnl\|CDD\|179591	PRK03545, PRK03545, putative arabinose transporter; Provisional.	0
NZ_CP009533.1\|WP_148308601.1\|1197953_1198259_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|162974	TIGR02683, Uncharacterized_protein_HI_1419, putative addiction module killer protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the upstream member of a gene pair, where the downstream member is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, often are located with prophage regions, but also in both integrated plasmid regions and near housekeeping genes. Analysis suggests that the gene pair may serve as an addiction module.	4.37401e-43
NZ_CP009533.1\|WP_043187399.1\|1215023_1215950_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.11496e-13
NZ_CP009533.1\|WP_043187367.1\|1200413_1201364_+\|FecR-domain-containing-protein	gnl\|CDD\|236622	PRK09774, PRK09774, fec operon regulator FecR; Reviewed.	3.61846e-67
NZ_CP009533.1\|WP_043193328.1\|1219045_1220548_-\|glycerol-kinase-GlpK	gnl\|CDD\|234594	PRK00047, glpK, glycerol kinase GlpK.	0
NZ_CP009533.1\|WP_043187409.1\|1221737_1222208_+\|Cys-tRNA(Pro)-deacylase	gnl\|CDD\|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	7.16808e-75

>NZ_CP009533.1|WP_043187383.1|1208403_1210284_-|methyl-accepting-chemotaxis-protein
MNLKFSHKILIAGCSIVILAFALFTVYNDYLQRSSIQQNLSASVKQSGELTASSVKNWLSGRILVIENLRQNIAYQADKADYAGLLDQPVITSNFQFTYMGQADGTFTQRPDTQMPAGYDPRQRPWYKAAVSADQVMLTPPYLASVGGLVVTVAAPVKSQGRLMGVVGGDLSLDTLVQIINSVDFGGIGHAFLVSGDGQVLVSPDKDQVMKNLKDVYPGNTPRIEKNLQEVILNGQERLLSFTPVTGLPSADWYVGLSIDKDKAYAPLRQFRTSALIAMIVAVIAIALLLTLLINVLMRPLVTMGRAMRDIAQGEGDLTRRLVVESRDEFGELGTSFNQFVERIHASIGEVSSATREVHALSQRVMHSSNQSIAGSDEQSARTESVAAAINELGAAAQEIARNAAQASRQASDASSQADDGRQVMSRTIEAISTLSEKISLSCEQIETLNAGTDNIGHILDVIKGISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQQSAEEIHKMITTLQVGSREAVVTMNTSQASSQESMAVANQAGDRLSIVTQRIGEIDGMNQSVAAATEEQTSVVEALNVDISQINMLNQQGVTNLTETLRNCDALSQQANRLKQLVDSFKI
>NZ_CP009533.1|WP_043187381.1|1208038_1208320_+|hypothetical-protein
MPSRLIVYPAVVALTVLLAGCDAAETAANKVIETSKTQLVEAARDTFSESAKQINETIDKAQQSAKPWMKDGDEKNETQQSTAEREDKAKSEG
>NZ_CP009533.1|WP_043187379.1|1207332_1207761_+|nuclear-transport-factor-2-family-protein
MKKLTLLVGFLCLFTGYVAAASPDETDVAAAVDRLTQAMWHKDIAQLNALTAENLTYGHSSGNIQDKRAFIADIETGKSAFNELKMLNQKITLSGDVALVRNHFSAQAVNSGKVVPTEIENFQIWQKQNGEWLLIGRQAFRF
>NZ_CP009533.1|WP_043187373.1|1204002_1205946_-|methyl-accepting-chemotaxis-protein
MNIKQKLTWGFAVIACLPVIVVAVLVVFNLREAARAEFVDSSGREIRQIDNGIKQFFDGISQNVEYLAKDPRIVAARDLKNYSGADAPQIPLTENNQRLLEIFDGFAKTHPSTAYLSMGMSDGGYASWPNDPKIANYDPRQRPWYKAAMAAPGTTVRTDAYYWAADDVSLIGTVHSVTDTAGQVVGVVGLDVSLKQMTELVKNIKLGNSGYLMLIEANGNVLVDARDAQHNFKPLAELGGNYAELARHGDGATQIEIDGKVYMANIVSSSGLGWRFIGLIEREEVMAQASNLTWLIAAIAAVLAVVFAIVGASFAGVIVRPIRGVANGLQEIAEGEGDLTRQLKVQGKDETAALAGWFNQFVGMIAQLVQRIGTASSDLQAAAADTHEVARHMDEVAGRQREAVELVSTAFNEMVATANEVARSCGQAATSADNGYQEVHDGQQRIGEATTCVLKLSSELQQSTETMQLLQQDSKNINSILDTIRSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALARRTADSTGEIDGLLGNLARRTQVITQQMQGSLQVSQDSVECIQQARDSFDKIRTSVDSIRDQNNQIATAAEEQHQVAEEINRHIAQIHADAQLVEEYAHTAQSGSGRLTDISGNLRGLVGRFKV
>NZ_CP009533.1|WP_084139718.1|1201429_1203862_+|TonB-dependent-receptor
MPPRPPRSFPRDSRKPSTRYVRALPLSLLLGIAPLPLQTALADDTARVYNVPRGELAASLIRFASQAGVSLSVAPALVNGRQSAGLVGEYSVEGGFAQLLAGSGLRLQAVGQDAYTLVAAPQGADVLEITPTTVTGAAQGNVAGESYAGGQVARRSSQGLLGARDFMDTPFSMTTYTSETAKNQQARTLGDLVASDPAVRTTNPAGGRFEQFTIRGFSLFNSDVSYNGLYGILPTYSIDMEMAERVDILRGPSQLINGISPRGSVGGGINVVPKRATDAPINEFTASYASDSQAGGAVDVGRRFGEDNRFGIRLNAVKQAGDTTWDEQSVDRQMAVLGLDFRGERLRLSADVGHTERDTDAPQERVQVGANARVPGANHVRDNYAQGWSKARTEDTFGAFNGEYDLSDSVMVYGSIGARESNHDFLRHNVSVTNDAGDFDVLPRDFTRDESVRTATVGVRNWFQTGPVSHEVNLAASHFYMDFTNGGARYARGRSNLYAPTATPTPANPTRQDPEVYTENRFDGVALSDTLGFFDDRLLLTLGARWQRVKVDDWSDGVRGDTGYDEEKLSPSAGVLYKLTDELSVYANYLEGLSQGKIAPSTSINEDEIFPPFISRQVEVGAKYDLGSLAITAAAFRIKQPAYETNALTRTFGPNGKRENNGVELSVFGEPLPGVRLLGGVMYIDSELTGTSAGAFDGNRAPATPELNVNLGAEWDVPALPGLTLTGRGIYSSSQYLDQANSKEIDSWERFDVGARYAFKVQGKAVTLRANVENVLDKRYWASAGASDDSEPGLTLATPRTYLVSATVGF
>NZ_CP009533.1|WP_043187367.1|1200413_1201364_+|FecR-domain-containing-protein
MLSLEPSDEARQAARSAARWWVCMESGAVTEQDLARLQRWREASEAHESAWRRVSALKGRFQSLPPAVAMASLDRPAPSRRTVMKSLLGLAVAMPAGLWVARELPTDAWRADVATDTGERRRLTLADGSVLQINTATAVDIDAGQRRLTLLRGEIGLRLANATPFAIHTALGHVKLNSGEINVRYGNGRCQLSVLAGSAHVRPTGFAPLTLLAGQQVRLTSTGTGPVERFDPRQPGWRDGVLVALNEPLGDFLRELDRYRPGILRWQPELEDLRVTGSFRLDDPDQVLNLLAVSLPLQVQWRTRYWATLVPREKTT
>NZ_CP009533.1|WP_043193327.1|1199907_1200420_+|sigma-70-family-RNA-polymerase-sigma-factor
MVEPAGADVRAFETLYRDNRSWLEHWLGRRLGSAWDAADLSQDTFIRVLASSQSIAELQEPRAYLKTVGKRLLVNFYRRRSLEQAYLDALATLPANVASSPEQRWQVLETLHALDQLLDGLPAKVRRAFLLSQLEGLGYREIAERLKVTERSVKRYMAQAYEHCLLADLC
>NZ_CP009533.1|WP_084139717.1|1198560_1199748_+|sugar-transporter
MNTSSNTPTGSWSSVIALALAAFIFNTTEFAPVGLLTSIGQSFAMPTAQVGLMLTVYAWVVSLMSLPIMLLTRNVERRRLLIGVFILFVASHAVSSVAWSYGVLLASRIGIAFAHALFWSITASLAVRLAPPGKHTQALGLLATGTCLAMVLGVPLGRVVGEALGWRTTFVGIGVVATAVGLWLAKSLPALPSQNSGSLRSLPMLLKRPVLVALYVTTALVITAQYTAYSYIEPFVQAAAQMSGEMTTTLLLLFGGAGVIGSVVFSRYSGRYPRGFMVASIALLALCLMLLLPLARYATYLGGVSVVWGISIMCFSLAMQSKVLELAPDATDVAMALHSGIYNVGIGGGALLGSVVITQLGVANIGIVGALMAGAGLLLCWHTTYRRVQSAPISG
>NZ_CP009533.1|WP_148308601.1|1197953_1198259_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MMKIATTDVFERWFTRLRDRQAAIRIQARIDRLEDGNWGDWQSVGEGVCEMRLHFGPGYRLYFMQHEQCWIVLLAGGDKSTQSSDIAIAKRMAHQLQEQER
>NZ_CP009533.1|WP_052393255.1|1197633_1197957_-|putative-addiction-module-antidote-protein
MKIKLREWDSAEHLKTDQDMIMYFDACMAEAGDDAAFIAKALGNIARAKGIAQVAKDTGLGRESLYKALSEDGNPSFATILKVTRALGISLHAGLLASPSRPAPAIG
>NZ_CP009533.1|WP_043187386.1|1211043_1211316_+|DUF3077-domain-containing-protein
MTTLHNCKTLGITSFARCGDGSHTLFLVNSNVPADAALEYAAMLQASVNQALLEAVEGDSVAALLWPALYLGEMAKAVIEDLAEGAKATG
>NZ_CP009533.1|WP_043187390.1|1211520_1212786_-|mechanosensitive-ion-channel-family-protein
MNIESLWQQTVTFITGLDDQPVLQAGVSLFLLLIAAFTLGRLARFLTLHAVKLLSRRPSLHWLTDFLHNKVFHRLAQMTPSLVVQFSLGLIPVLSDNSKHVIGNIALGFTILFMVLALGALLNALLDIYARTEHARTRSIKGYVQLAKMILYIFGAIIIVATLIDRSPLLLLSGLGAMSAVILLVYKDTLLSFVASVQLTSNDMLRVGDWIEMPQVGADGDVVDITLHTVKIQNFDKTIVSIPTWRLMSESFKNWRGMQQSGGRRIKRALNIDASGVRFLDEQEQLRLTQVHLLSGYVSSKQAELKAWNAAQGEVAELSANQRRMTNLGTFRAYALAYLNAHPDIQPNMTCMVRQMEATAEGVPLEIYCFTRTTAWAEYERIQGDIFDYLLAVLPEFGLSVYQKPSGADLRGGLVAVTAHS
>NZ_CP009533.1|WP_043187392.1|1212970_1214314_+|DEAD/DEAH-box-helicase
MFSQFALHERLLKAVAELKFVEPTPVQVAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLMGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFIKAGLITGGEDFKVQAAMLRKVPDILIGTPGRLLEQLNAGNLDLKNVEVLVLDEADRMLDMGFSEDVTRLSQECAQREQTLLFSATTGGAGLREMIGKVLKDPEHLLINNVSQLAEGTRQQIVTADHNVHKEQILNWLLANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGDKDQKDRKLAIDRLKQGGVKILVATDVAARGLDVDGLDLVVNFDMPRSGDDYVHRIGRTGRAGNEGLAISLICHGDWNLMSSIERYLKQTFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDKDKKGDKKSVAKGPTKRKSVNRPKADTPALVSQDGMAPLKRRKPAVSE
>NZ_CP009533.1|WP_043187397.1|1214454_1214847_+|hypothetical-protein
MTTYDWQLIERLLHEVQNGANQDFAAHRYAQDHAEATTAQGDTPAHIDELAAQARDYEKLLLERGFIEQRPDSEGGTGHNFQLTLRGSSLLSLIDSSIPDNDHGLEVLDDQDDALDPATFDEVASKPQIV
>NZ_CP009533.1|WP_043187399.1|1215023_1215950_+|DMT-family-transporter
MSAERRQTDGFALKVMLGLCLIWGIQQVTIKWAAADIAPVMQAAMRSGISAVLVAMLLCWRGGWGHVPYTWRAGLVAGSLFGLEFLFIAEGLKLTSAAHMSVFLYTAPVFTALGLHALLPTERLRPLQWLGIALAFSGIAFAFAGGISWQHLDRRMLLGDAMGLMAGLCWGATTVVVRTSRLSEAPVALTLFYQLIVCVVGLLIIALATGQFSHVSFTPIGVASVLFQGVVVSFASFLIWFWLLRRYLASNLAVFSFMTPLFGVTFGVVLLGEPLSINFILGAMCVLLGITLVSAEQWVRRKLRIWIT
>NZ_CP009533.1|WP_043187401.1|1216301_1217840_-|glycerol-3-phosphate-dehydrogenase
MPHSTLPRQPLAEIYDVAVIGGGINGVGIAADAAGRRLSVFLCEKDDLASHTSSASSKLIHGGLRYLEHHEFRLVREALAEREVLLAKAPHIVKPMRFVLPHRPHLRPAWMIRAGLFLYDNLGKREKLPGSRSLRFGADSALKPEITRGFEYSDCWVDDARLVVLNAMAAREKGAHIHTRTRCVDAKRVDGIWQVNLQREDGSTFTLKARALVNAAGPWVAKFIRDDLQLQSQYGIRLIQGSHLIVPRLYEGEQAHILQNEDQRIVFTIPYLDRFTILGTTDREYTGDPSKVEITDAETDYILKVVNAHFKKQVSRSDIVRTYSGVRPLCNDESDNPSAITRDYTLSLSGGQGEAPILSVFGGKLTTYRKLAESAMAQLKPFFAQMRGSWTATSALPGGEDMTTPQALAQSMRAKAPWLPSGLAERWAVSYGSRSLRLIEGAQSLADLGEELGAGLYSREVDYLYEHEWATRSDDVLWRRSKLGLFVDEAAAARLDAYLAKIDASRANTQAA
>NZ_CP009533.1|WP_043187404.1|1218152_1218908_-|DeoR/GlpR-family-transcriptional-regulator
MNLPPRQQQILELVRERGYVSIEEMAQLFVVTPQTIRRDINQLAEVNLLRRYHGGAAYDSSIENTAYAMRADQMRDEKQRIAEAIAAQIPDHASLFINIGTTTESIARALLNHSHLKIITNNLHVASILSGKDDFDVLLAGGNVRRDGGVVGQASIDFITQFKVDFALVGISGIDEDGSLLDFDYQEVRVSQAIIANARQVILAADSSKFGRNAMVRLGPISLIDCLVTDQPPVPALLQLLQQHKIRLEIV
>NZ_CP009533.1|WP_043193328.1|1219045_1220548_-|glycerol-kinase-GlpK
MTDTDNKNYIIALDQGTTSSRAIIFDRDANVVGTSQREFAQHYPQAGWVEHDPMEIFATQSATMVEALAQAGLSHAQVAAIGITNQRETTVVWDKNSGRPIYNAVVWQCRRSTEICQQLKRDGMEDYIKQTTGLVVDPYFSGTKLKWILDNVEGSRERARNGELLFGTIDSWLIWKFTGGKVHVTDYTNASRTMLFNIHTLEWDEKMLQTLDIPREMLPEVKSSSEVYGHTKSGIAIAGIAGDQQAALFGQMCVEPGQAKNTYGTGCFLLMNTGKKAVTSQHGMLTTIGCGPRGEVAYALEGAVFNGGSTVQWLRDELKIVNDAYDTEYFASKVKNTNGVYLVPAFTGLGAPYWDPYARGALFGLTRGVRVDHIIRAALESIAYQTRDVLDAMQQDSGERLSALRVDGGAVANNFLMQFQADILGTPVERPQMRETTALGAAYLAGLACGFWGSLDELRGKAVIERTFEPLLDETGKEKLYAGWKKAVERTRDWEPHEEQ
>NZ_CP009533.1|WP_043187407.1|1220601_1221441_-|aquaporin
MTAQQQPTLSGQCTAEFLGTALLIFFGTGCVAALKVAGASLGLWEISIIWGVGVSMAIYLTAGVSGAHLNPAVSIALCLFGGFEKRKLPFYILAQVAGAFCSAALVYTLYSSLFFDYEQTHGIVRGTQASLETASIFSTYPHAALSVGQAFLVEMVITAILMAVIMALGDEHNGLPRGAMAPLLVGLLIAVIGSAMGPLTGFAMNPARDFGPKLMTFIAGWGEIAFTGGRTIPYFIVPIVAPIVGACLGAGAYRVLIARHLPNSVNESAKAAASKVQAS
>NZ_CP009533.1|WP_043187409.1|1221737_1222208_+|Cys-tRNA(Pro)-deacylase
MTPALDLLKKHRADHRVHAYEHDPKAASYGLEAVEKLGLAPAQVFKTLLAATEKSELLVAVVPVTGTLDLKALAQAAGVKKCEMADPQAAQRATGYLLGGISPLGQKKRLRTFIDQTAAALPHVFVSAGRRGLEVELAPQLLAEHTGGHFADIGRV

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Crispr_ID: NZ_CP009533_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009533_4

1977382-1977492

Orphan

Consensus_repeat	Method
CCCCTGTAGCAGCGGCGCAAGCCGCGTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009533_4

>merge|NZ_CP009533|4|1977382-1977492|CRISPRCasFinder
CCCCTGTAGCAGCGGCGCAAGCCGCGTCCGGCCGCACCGCGCCGTTCCAGAAACACCGCCGGCGCAACTGATGGAACGCGAACCCCTGTAGCAGCGGCGCAAGCCGCGTCC

>NZ_CP009533|4|4|1977382-1977492|CRISPRCasFinder
CCCCTGTAGCAGCGGCGCAAGCCGCGTCC	GGCCGCACCGCGCCGTTCCAGAAACACCGCCGGCGCAACTGATGGAACGCGAA
CCCCTGTAGCAGCGGCGCAAGCCGCGTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009533.1\|WP_043189047.1\|1984977_1985259_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|185338
NZ_CP009533.1\|WP_043189042.1\|1979226_1980804_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226641
NZ_CP009533.1\|WP_043193508.1\|1980932_1981955_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226690
NZ_CP009533.1\|WP_043189015.1\|1967582_1967789_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009533.1\|WP_043189044.1\|1981951_1983013_-\|microcin-C-ABC-transporter-permease-YejB	unknown	unknown	gnl\|CDD\|226642
NZ_CP009533.1\|WP_043189030.1\|1972161_1973040_-\|Ku-protein	unknown	unknown	gnl\|CDD\|238408
NZ_CP009533.1\|WP_043189034.1\|1973670_1973946_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|185338
NZ_CP009533.1\|WP_043189036.1\|1973988_1976130_-\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_CP009533.1\|WP_043189054.1\|1987510_1989886_-\|xanthine-dehydrogenase-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|274367
NZ_CP009533.1\|WP_043189040.1\|1978416_1979187_-\|3-hydroxybutyrate-dehydrogenase	unknown	unknown	gnl\|CDD\|187644
NZ_CP009533.1\|WP_043189019.1\|1967906_1968239_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009533.1\|WP_043189051.1\|1986651_1987518_-\|xanthine-dehydrogenase-accessory-protein-XdhC	unknown	unknown	gnl\|CDD\|274366
NZ_CP009533.1\|WP_043189049.1\|1985347_1986655_-\|guanine-deaminase	unknown	unknown	gnl\|CDD\|236419
NZ_CP009533.1\|WP_043189032.1\|1973292_1973550_+\|DUF1652-domain-containing-protein	unknown	unknown	gnl\|CDD\|311697
NZ_CP009533.1\|WP_043189026.1\|1968881_1969100_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009533.1\|WP_043189014.1\|1965981_1967406_-\|putrescine-ornithine-antiporter	unknown	unknown	gnl\|CDD\|182622
NZ_CP009533.1\|WP_043189029.1\|1969102_1971934_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|238654
NZ_CP009533.1\|WP_193385581.1\|1977551_1978283_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|226098
NZ_CP009533.1\|WP_043189023.1\|1968421_1968769_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009533.1\|WP_043189045.1\|1983012_1984860_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173862

Protein	Function_ID	Function_description	E-value
NZ_CP009533.1\|WP_043189047.1\|1984977_1985259_-\|peptidylprolyl-isomerase	gnl\|CDD\|185338	PRK15441, PRK15441, peptidyl-prolyl cis-trans isomerase C; Provisional.	1.79467e-31
NZ_CP009533.1\|WP_043189042.1\|1979226_1980804_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226641	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only].	0
NZ_CP009533.1\|WP_043193508.1\|1980932_1981955_-\|ABC-transporter-permease	gnl\|CDD\|226690	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NZ_CP009533.1\|WP_043189014.1\|1965981_1967406_-\|putrescine-ornithine-antiporter	gnl\|CDD\|182622	PRK10655, potE, putrescine transporter; Provisional.	0
NZ_CP009533.1\|WP_043189030.1\|1972161_1973040_-\|Ku-protein	gnl\|CDD\|238408	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku. The alignment includes the core domain shared by the prokaryotic YkoV-like proteins and the eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs are predicted to form homodimers. It is proposed that the Ku homologs are functionally associated with ATP-dependent DNA ligase and the eukaryotic-type primase, probably as components of a double-strand break repair system.	2.21804e-111
NZ_CP009533.1\|WP_043189044.1\|1981951_1983013_-\|microcin-C-ABC-transporter-permease-YejB	gnl\|CDD\|226642	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NZ_CP009533.1\|WP_043189034.1\|1973670_1973946_-\|peptidylprolyl-isomerase	gnl\|CDD\|185338	PRK15441, PRK15441, peptidyl-prolyl cis-trans isomerase C; Provisional.	2.41238e-27
NZ_CP009533.1\|WP_043189036.1\|1973988_1976130_-\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	1.1042e-128
NZ_CP009533.1\|WP_043189054.1\|1987510_1989886_-\|xanthine-dehydrogenase-molybdopterin-binding-subunit	gnl\|CDD\|274367	TIGR02965, xanthine_dehydrogenase, xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP009533.1\|WP_043189040.1\|1978416_1979187_-\|3-hydroxybutyrate-dehydrogenase	gnl\|CDD\|187644	cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs. DHBDH, an NAD+ -dependent enzyme, catalyzes the interconversion of D-3-hydroxybutyrate and acetoacetate. It is a classical SDR, with the canonical NAD-binding motif and active site tetrad. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.75119e-142
NZ_CP009533.1\|WP_043189051.1\|1986651_1987518_-\|xanthine-dehydrogenase-accessory-protein-XdhC	gnl\|CDD\|274366	TIGR02964, conserved_hypothetical_protein, xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. [Protein fate, Protein folding and stabilization, Purines, pyrimidines, nucleosides, and nucleotides, Other].	5.47915e-126
NZ_CP009533.1\|WP_043189049.1\|1985347_1986655_-\|guanine-deaminase	gnl\|CDD\|236419	PRK09228, PRK09228, guanine deaminase; Provisional.	0
NZ_CP009533.1\|WP_043189032.1\|1973292_1973550_+\|DUF1652-domain-containing-protein	gnl\|CDD\|311697	pfam07865, DUF1652, Protein of unknown function (DUF1652). This is a family containing hypothetical bacterial proteins.	5.84772e-20
NZ_CP009533.1\|WP_043189029.1\|1969102_1971934_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|238654	cd01344, PL2_Passenger_AT, Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43, AIDA-1 and IcsA, as well as, the less characterized ShdA, MisL, and BapA autotransporters.	7.44927e-40
NZ_CP009533.1\|WP_193385581.1\|1977551_1978283_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	1.87811e-69
NZ_CP009533.1\|WP_043189045.1\|1983012_1984860_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173862	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0

>NZ_CP009533.1|WP_043189036.1|1973988_1976130_-|response-regulator
MNASPVGGKVATLIASMDWADSPLPGPDAWPQSLRTAVDIVTHSPMPMLLLWGTQLCQLYNDAFALLVGSNHPRALGQPVDSIWPELKPFTDPIYAAVLQGEVRTFNEKDFNLPREDHWAKVWLDLTYSPIRDENERVAGILVTAIEANERREVSAVGKRAEQELRDSEAHFRMAIELSPAVHWTAEANGRTDGESQTERWRQLTGMHSLRPDDDWAQLVHPDDHLPTLDAWQLAVSTGRPYDAEYRLRMADGSYHWMHARALPWLDAEGVIRQWFGMTEDVQNRRQVEQALRELNEHLETRVSERTQALAEVNLRLQNEMQERERAEEALRHAQKMEALGQLTGGIAHDFNNMLTGIIGSLDLMQRYIDAGRSSEIKRFSEAAVSSAHRAAGLTHRLLAFSRRQSLDRKRLAPNELVHSLEELFSRTLGEHLQLRLQLAPDVWPVNTDASQLENALLNLIINARDAMPDSGVLTIETANCELDATPEGATLEPVKPGAYVMFRVSDNGSGMSAPVLAKAFDPFFTTKPIGQGTGLGLSMIYGFAQQSGGQVTLQSRVGEGTCVRLYLPRHLEPLGDITEQHASAAPPMAQDGESVLVVEDDPAVRMLVLDVLDELGYAAHSAAEATAALALIEAGLHIDLLVTDVGLPGLNGRQLAEIARQQRPGLKVLFITGYAEKAAERYGFLAEGMDMITKPFSLERLGSKIRDMINLS
>NZ_CP009533.1|WP_043189034.1|1973670_1973946_-|peptidylprolyl-isomerase
MKAQARHILVKTAEEAEALRLRIAKGEAFDVLAKKYSTCPSGKRGGDLGEVRPGQMVGAIDQIIFKKPLRTVHGPVKSKFGYHLVQVFYRD
>NZ_CP009533.1|WP_043189032.1|1973292_1973550_+|DUF1652-domain-containing-protein
MLSTLELRNIIESSFLPQRCQCTQATDRSLTVRVFDHATHKVDYTLSGIRTEQLTSSRAISNLIAGMRTDLKRQGQLPKAVGEYL
>NZ_CP009533.1|WP_043189030.1|1972161_1973040_-|Ku-protein
MARAIWKGAISFGLVHIPVALVSATASQGVDFDWLDKRSMDPVGYKRINKKTGKEMDKENIVKGVQYEKGRYVVLSEDEIRAAHPVSTQTIDIFSFVDRTQIPLPNIDTPYFLAPDRRGEKVYALLRETLISTKKVALALVVLHTRQYLAALMPLDGALVMVKLRWPSEVRDLDILELGKEVKKPELTKKELDMAKRLVEDMSGDWQPEEYVDKFEQKIMALVEKKANKGEIEDVETEAGQESRQTADVIDLTELLKRSLAGKPSAASKSKPAKAKTAPKKAPARRRPRKAS
>NZ_CP009533.1|WP_043189029.1|1969102_1971934_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MNTNALLMRTGLLTALIVPSDQVLADCAFAPGVGNDAYVCDSGTAPALSDLLGDNSLTLPVDGTGSITGPVDFGPGQDAVRIHSGSVGGAMNTGAGADTVFFGGGRLFSLAQGDGADVLEMTGGIVSGAVSQGSGIDSFIMRGGQIQSLSQGDGLDTFLMTDGTIVGAFEDGDIARMSGGTIGRVDMKLDNNLFELSGGRINGNLVAGFGNDTITVSAGSIGGNISVSGGTDQVTVSGGDIGGNVLLSFGDDRFIWRDGGLIHGTVSLGPGNDTALLSNLSDAQLASPNLIYGDAGVDTLTFDNSRATGGARYSYWETINLNNGSVLDLADRLSLADDSTPLGSGLLTLDRTSTLGATQGSVGPIVAGQTVTVNNAGSIDLTRSGAQAGDRLTIIGNYVGNDARLKLQSVLGADDAPSDRLIVAQGTISGSTAITVDNLDGQGALTAANGIPLVEATQGATSSDGAFTLANNLSVGAYQYYLFKGGVTAGSENSWFLRSSVAPVIPPPPVIEPPVVEPPVVEPPVVEPPIVDPPVVEPPVVEPPVVQPPTVEPPIVEPPIAEPPVNEPSPVTPPSGEPPEPPQVDLVVPPPPVQPQPPEPAPAPSGPIAAVGTPGLPPAIPGQSILLYRIEVPAYSAVPPAAALLALDSLGSFHQRHGEQSLLKERGALAAGWARTFGSHGRQKWAGSAAPSLSSNISGYQVGHDLFAALGDNGYRQHAGLFVGHSRLDGKVRGFALGFDDTPSGDIRLRADSLGAYWTLVSPAGGYLDVVAMGTRFDGRSRSERGYTLDLDGQGIAVSVEGGYPIMLSRQWMLEPQAQVIGQKNSLDTARDPVSEIAFDSEPYWRARLGVRLKGEYRVGSLPLEPSVRANVWHTLQGEDAVTFDDRDTLHTRHRATQAQLGLGLTARLSDDVSVYLDTDYARSLDSQPQESLQGSLGLRISW
>NZ_CP009533.1|WP_043189026.1|1968881_1969100_+|hypothetical-protein
MAPSSSTQIPDPLDRPNDPVAPEPYAEGKPDEDVRPGDETLSPVPMDSDPEVDPRQVRTQTGEPDISPDDPA
>NZ_CP009533.1|WP_043189023.1|1968421_1968769_+|hypothetical-protein
MRIIAAALGLCVLTGCTGINMKQARSGAPVQSVTSQKPAQKIAQCVQFSWQDEAMFGVMTDASTEASDGGYTVFTPAATYFADIRPRGAGSVVSFYAREQGEVATRRLASLATCL
>NZ_CP009533.1|WP_043189019.1|1967906_1968239_-|hypothetical-protein
MAEPDSRHQAALDRFLEEHAELQTELDGLNPLAARAAGLSIAEYRAERLHEAFEEAADAQGLFAWELTLQLTAATPEEFKAQRLKVHKEVAEMAGMPWDEYMQLHGLHDG
>NZ_CP009533.1|WP_043189015.1|1967582_1967789_+|hypothetical-protein
MVEDNNHPQNPYPGPAEPGSGEEGYPDIHDEHDDDQDGSPGNKAVDEPDTGTNPPVDEDEEPSPGNRL
>NZ_CP009533.1|WP_043189014.1|1965981_1967406_-|putrescine-ornithine-antiporter
MSVMKKMSVSQLTMLTAVNMLGSGIVLLPTKLAEVGGISILSWLITATGSLALAYAFARCGMLSRKTGGMGGYAEYTFGKSGNYITNYTYGLSLLIANVAISITAVGYIQTLFDIKLGSLQVGLATIALLWITTFANFGGANVTGKIGAITVWGVIAPVVLVSTVGWFWFDSGTYAAGWNPYDMRWYEAAGASVAITLWAFLGLESACANGDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVDNAELVSSTAPFGLVFAKMFTPMVGNLVMGLMVLACIGSLLGWQFTVAQVFKSSADTGYFLPIFAKVNAHGVPVISMLILLAIQTALALLTISPDLAKQFDTLVNLAVVTNLVPYILSMATLMTLQKVSNVPANKALVTNIVAGIAAAYSYLALYSSGAQALMLGGVATIVGYTLFGFVNNRLIRLEAVNNSAPTQTVAAQHIVGTPIPVNSLASPTSNTPAPEARP
>NZ_CP009533.1|WP_193385581.1|1977551_1978283_-|endonuclease/exonuclease/phosphatase-family-protein
MRVLTVNTHKGFTAFNRRFILPELREAVRSTSADLVFLQEVLGGHDGHASKFSNWPQMSQYEFLADSMWSDFAYGRNAVYPDGHHGNAVLSKYPILRYTNLDISITGPERRGLLHCVLQVPGHDEVHAICVHLSLLESHRQLQLALLGQLLDSLPADAPVIIAGDFNDWQLRGNATLAKRQDLHEAFERHNGQLAKTYPARFPLLRLDRVYVRNATSHGPIILGNKPWTHLSDHLPLAVEIHL
>NZ_CP009533.1|WP_043189040.1|1978416_1979187_-|3-hydroxybutyrate-dehydrogenase
MALDGKTALVTGSTSGIGLGIASVLARHGANVVINGFGDPAQALAEVRRHGTQVAHHGADVSDPTQLAELFEYVQASFGGVDILVNNAGIQHVAAVEAFPVERWDAIIAINLSSVFHGTRLALPGMREKGWGRIVNIASVHGQVGSVGKSAYVAAKHGVIGLTKVVGLETATTQITCNAICPGFVLTPLVQKQIDDRAARGGDPAAAQRELLAEKQPSLEFVTPEHLGELVMFLCSEAGSQVRGAAWNIDGGWLAQ
>NZ_CP009533.1|WP_043189042.1|1979226_1980804_-|ABC-transporter-ATP-binding-protein
MTAENLIEIRHLNVAFNGQAAAKDVGFDIPVGQCVALVGESGSGKSVTAHSILQLLPASGCQSSGSVRYQGQELLGADAATLRRMRGDRIAMIFQEPMTSLNPLHTVQKQIGETLLVHKGMGGKQAEARILELLEMVGIREPHKRLKAYPHQLSGGQRQRVMIAMALACEPQLLIADEPTTALDVTVQRRILLLLKSLQERLGMSLLLISHDLNLVRSIAQHVCVMRAGEIVEQAPCEQLFSAPQHPYSQLLLDAEPAGVALFHETRPELLQVEQLKVWYPLDGGLFRKPREFVKAVDGISLSVQQGKTLGIVGESGSGKSTLGQAILRLLDSQGGIRFQGQALDGLDQKQMRPWRKQMQVVFQDPFGSLSPRMSVAQIISEGLEVHSGAHARACDEQVIQVLREVGLDPAARHRYPHEFSGGQRQRIAIARALVLRPALMLLDEPTSALDRTVQKQVVQLLQQLQERHGLTYLFISHDLAVVRALAHDVIVVKDGQVVEHGPTDRLFSAPRHPYTQELLQAALV
>NZ_CP009533.1|WP_043193508.1|1980932_1981955_-|ABC-transporter-permease
MMRLSPLARRRLDRFKQNRRGWWSLWLFLALFALTLGGELVANDKPLVLKYDGELYFPVFKRHTEQEFGGQLPFQADYRSDYVRQLIASRGGWMLFPPIPFSADTPNYDLTQPAPSPPSTTNWLGTDDQSRDVLARVIFGARVSILFALALTLISSLIGIGAGALQGYYGGWVDLFGQRLLEVWSGLPVLYLLIILSGFVEPNFWWLLGIMALFSWLALVDVVRAEFLRGRNLEYVKAARALGLSDRKIILRHILPNAMNATLSFLPFILTGAISTLTALDFLGFGMPAGSASLGELIAQGKQNLQAPWLGFTAFFTLALILSLLVFIGEGLRDAFDPRA
>NZ_CP009533.1|WP_043189044.1|1981951_1983013_-|microcin-C-ABC-transporter-permease-YejB
MLGYTLRRLLLIVPTLLAILLVNFAIVQAAPGGPVEQAIARLQGVGGGSVTGGGGDMVQGGSRASRGLDPKLIKDIERQYGFDKPAHERLWLMIKSYAVLDFGSSFFRGAKVTDLILDKMPVTLSLGFWATLITYLVSIPLGIRKAVRHGSRFDVWSSSLIIIGYAMPAFLFAMLLIVVFAGGTSLNWFPVRGLVSDNFAELSLLGKVADYFWHLVLPVTSLVIGGFATLTILTKNSFLNEITRQYVVTARAKGLSEQRVLYGHVFRNAMLLVVAGLPQAFISVFFAGSLLIEVIFSLDGLGRLSYEAAVSRDYPVVFGSLFIFTLLGLLIKLIGDLCYTLVDPRIDFSARNA
>NZ_CP009533.1|WP_043189045.1|1983012_1984860_-|ABC-transporter-substrate-binding-protein
MRAVFLSIVLCALFTTATGAQAAAQHALTVYGEAPRYPADFQHFDYVNPDAPKGGSLRRSAIEIGQYDHILPYIDKGIGVSQVDGLLYSPLAVRSLDEPYTVYGLVAERMERGDDGLWLRFYLNPKAVFADGQPITAQDVRYTFELLMREGSLGYRTQFANVADVQVEGPRQVRFNFKNAESRTLPLDLATLPVLPEHWWKTRDFASGGGFEAPLGSGPYAIEKIDNGRSITFKRNPDWWGKDLPEARGMYNFDRFSIEYFGDTDVARQVLRGGGYDYNREFSATAYTIGYNGPALDDGRLQRAHLAKAGLQAAQGFVFNLQRPVFQDRRVRQALAMLWDFEWSNRQMMRGMYIRQQSFFSNSPLAARQLPSDSELKILEKLRGQVPDEVFTQVFHAPVSDGSGLIRDKQLQALRLLQLAGWHADGDRLVNADGEPLSFTFLNTQNGLERLLLPWKRNLAQIGITMEIRRIDSSQYVNRLMARDYDMIITGYPVTPTPGIELYGFFGSGVATDPGSNNLMVLKNPAVDELINGLGAASTQTQMRDYAHALDRVLQWNYYWVPNYYPPGTSTVWWNRFGMPATPAANDPAIETWWEVSPTALTTEQMRDRLTGKTH
>NZ_CP009533.1|WP_043189047.1|1984977_1985259_-|peptidylprolyl-isomerase
MAKATARHILVADEAKCNDLKAQIEGGADFAEIAKANSTCPSSRQGGDLGSFGPGQMVKEFDTVVFSAPINVVQGPVKTQFGYHLLEVTSRQD
>NZ_CP009533.1|WP_043189049.1|1985347_1986655_-|guanine-deaminase
MSLTCKAYRAAILHSLDDPALVGVQASYEYFADGVLVVEDGRISALGAASEVLPTLSDDVEVTHYPDALITPGFIDTHIHFPQTGMVGSYGEQLLDWLNEYTFPCEGQFADKAHADGVAQIFLKELLRNGTTTALVFGSVHPESVDALFEAAQALDLRLIAGKVMMDRNAPDYLTDTAQSSYAQSKALIERWHGKGRLHYAVTPRFAPTSSEAQLTLAGQLLREYPDVYLQTHLSENLQEIEWVKALFPERGNYLDVYDHYQLLGERSVFAHGVHLCDAECERLAETGSAIAFCPTSNLFLGSGLFNLPQAERFKVNVGLGTDVGAGTSFSLLHTLNEAYKVMQLQGEKLNPFKSLYLATLGGARALRLEDRVGTLQPGTDADFVVLDYHATPLLSYRIAQAKTFEEVLFVLMTLGDDRAVLQTYAAGRRVHSRD
>NZ_CP009533.1|WP_043189051.1|1986651_1987518_-|xanthine-dehydrogenase-accessory-protein-XdhC
MTDWIGALAEQQARGEACVLVTIIEEKGSTPRNAGAKMVVSDTALFDTIGGGHLEYKALHIAREMLAEGTRATRLERFSLGASLGQCCGGATVLLFEPVAQTQAQVVVFGAGHVGRALVPLLASLPCRVRWVDSRPEEFPASLPDGVCQVITDEPVDEVASLPVGSYCIVMTHDHSLDLELTRAILERNDFTWFGLIGSATKRARFEHRLRDRGIAPSVVQRMRCPMGLEAVKGKLPMEIAVSIAAEIIATYNAHFGARAEPGTASSPGVAQLLPRSRRSPAALRDAP
>NZ_CP009533.1|WP_043189054.1|1987510_1989886_-|xanthine-dehydrogenase-molybdopterin-binding-subunit
MSEHQAPDSQARMAELFAQGLTTGVGRGVKHDSADKHVTGEAVYIDDRLEFPNQLHVYARLSDRAHARILRIDTSACYDIPGVRLVITHEDIPGLKDIGPLLPGDPLLAIDKVEFVGQPVLAVAARDLDSARRAAMAAVIEYEDLPPVLDVVQALRQQHFVLDSHTHQRGDSAAALASAPHRLQGSLHIGGQEHFYLETQISSVMPTEDGGMIVYCSTQNPTEVQKLVAEVLDVSMSQVVVDMRRMGGGFGGKETQAASPACLCAVVAHLTGQPTKMRLPRVEDMLMTGKRHPFYIEYDVGFDDNGRLHGIDLDLAGNCGYSPDLSASIVDRAMFHADNAYYLGDATINGHRCKTHTASNTAYRGFGGPQGMVAIEEVMDRIARHLALDPLAVRKANYYGKTERNVTHYHQTVEHNLLEEITAELEASCDYEQRREAIRAFNADSPVLKKGLALTPVKFGISFTASFLNQAGALIHIYTDGSIHLNHGGTEMGQGLNVKVAQVVAEVFQVDIARIQITATNTDKVPNTSPTAASSGADLNGKAAQNAALILKQRLVEFAARHYRVSEEDVEFSNGHVRVRDQLLTFQSLVQQAWMGQVSLSSTGYYKTPKIHYDRSLARGRPFYYFAYGAACCEVLIDTLTGEYKLLRTDILHDVGASLNPAIDLGQVEGGFLQGVGWLTCEELVWSDQGKLLTSGPASYKIPAVADMPQDLRVQLVENRKNPEDTVFHSKAVGEPPFMLGIAAWCAIKDAVASLGDYRLQPNIDAPATPERVLWGCEQMRQAAPGSVRHD

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Crispr_ID: NZ_CP009533_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009533_5

1999603-1999714

Orphan

Consensus_repeat	Method
CCGCCGACGCGGCTCGCGCCGCTGCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009533_5

>merge|NZ_CP009533|5|1999603-1999714|CRISPRCasFinder
CCGCCGACGCGGCTCGCGCCGCTGCTACAAATACCCCCAGCCGCGCCGGGCTGCACCGCGTTTATCCTGATGCACCGCGTGCGCCGCCGACGCGGCTCGCGCCGCTGCTACA

>NZ_CP009533|5|5|1999603-1999714|CRISPRCasFinder
CCGCCGACGCGGCTCGCGCCGCTGCTACA	AATACCCCCAGCCGCGCCGGGCTGCACCGCGTTTATCCTGATGCACCGCGTGCG
CCGCCGACGCGGCTCGCGCCGCTGCTACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009533.1\|WP_043189047.1\|1984977_1985259_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|185338
NZ_CP009533.1\|WP_043189078.1\|2004723_2005050_+\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_CP009533.1\|WP_043189087.1\|2006600_2007203_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP009533.1\|WP_043189057.1\|1989878_1991333_-\|xanthine-dehydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|274365
NZ_CP009533.1\|WP_043193512.1\|2009090_2010161_+\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|236649
NZ_CP009533.1\|WP_043193511.1\|2007491_2008370_+\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_CP009533.1\|WP_084139768.1\|2003689_2004649_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236138
NZ_CP009533.1\|WP_043189071.1\|1999939_2001106_+\|putative-zinc-binding-metallopeptidase	unknown	unknown	gnl\|CDD\|379751
NZ_CP009533.1\|WP_043189063.1\|1992250_1995739_+\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
NZ_CP009533.1\|WP_043189068.1\|1997041_1999384_+\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP009533.1\|WP_043189051.1\|1986651_1987518_-\|xanthine-dehydrogenase-accessory-protein-XdhC	unknown	unknown	gnl\|CDD\|274366
NZ_CP009533.1\|WP_043189054.1\|1987510_1989886_-\|xanthine-dehydrogenase-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|274367
NZ_CP009533.1\|WP_043189091.1\|2010157_2011054_+\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	gnl\|CDD\|182184
NZ_CP009533.1\|WP_043189060.1\|1991588_1992248_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP009533.1\|WP_043189073.1\|2001385_2001868_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NZ_CP009533.1\|WP_043189084.1\|2005500_2006535_+\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176190
NZ_CP009533.1\|WP_043189066.1\|1995930_1996854_+\|cell-division-protein-ZipA	unknown	unknown	gnl\|CDD\|234706
NZ_CP009533.1\|WP_043189049.1\|1985347_1986655_-\|guanine-deaminase	unknown	unknown	gnl\|CDD\|236419
NZ_CP009533.1\|WP_043189089.1\|2008388_2008718_-\|YceK/YidQ-family-lipoprotein	unknown	unknown	gnl\|CDD\|369217
NZ_CP009533.1\|WP_043189045.1\|1983012_1984860_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173862

Protein	Function_ID	Function_description	E-value
NZ_CP009533.1\|WP_043189047.1\|1984977_1985259_-\|peptidylprolyl-isomerase	gnl\|CDD\|185338	PRK15441, PRK15441, peptidyl-prolyl cis-trans isomerase C; Provisional.	1.79467e-31
NZ_CP009533.1\|WP_043189078.1\|2004723_2005050_+\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	1.37585e-40
NZ_CP009533.1\|WP_043189087.1\|2006600_2007203_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	2.25002e-114
NZ_CP009533.1\|WP_043189057.1\|1989878_1991333_-\|xanthine-dehydrogenase-small-subunit	gnl\|CDD\|274365	TIGR02963, Includes:_Xanthine_dehydrogenase, xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP009533.1\|WP_043193512.1\|2009090_2010161_+\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|236649	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional.	0
NZ_CP009533.1\|WP_043193511.1\|2007491_2008370_+\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	3.23549e-81
NZ_CP009533.1\|WP_084139768.1\|2003689_2004649_+\|hypothetical-protein	gnl\|CDD\|236138	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated.	2.9522e-64
NZ_CP009533.1\|WP_043189071.1\|1999939_2001106_+\|putative-zinc-binding-metallopeptidase	gnl\|CDD\|379751	pfam15887, Peptidase_Mx, Putative zinc-binding metallo-peptidase. This family has a highly conserved HHExxH motif with a highly conserved ED pairing downstream. HExxH is indicative of a zinc-binding metallo-peptidase.	5.39467e-148
NZ_CP009533.1\|WP_043189063.1\|1992250_1995739_+\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NZ_CP009533.1\|WP_043189068.1\|1997041_1999384_+\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP009533.1\|WP_043189051.1\|1986651_1987518_-\|xanthine-dehydrogenase-accessory-protein-XdhC	gnl\|CDD\|274366	TIGR02964, conserved_hypothetical_protein, xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. [Protein fate, Protein folding and stabilization, Purines, pyrimidines, nucleosides, and nucleotides, Other].	5.47915e-126
NZ_CP009533.1\|WP_043189054.1\|1987510_1989886_-\|xanthine-dehydrogenase-molybdopterin-binding-subunit	gnl\|CDD\|274367	TIGR02965, xanthine_dehydrogenase, xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP009533.1\|WP_043189091.1\|2010157_2011054_+\|dTDP-4-dehydrorhamnose-reductase	gnl\|CDD\|182184	PRK09987, PRK09987, dTDP-4-dehydrorhamnose reductase; Provisional.	1.10407e-151
NZ_CP009533.1\|WP_043189060.1\|1991588_1992248_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	2.16511e-29
NZ_CP009533.1\|WP_043189073.1\|2001385_2001868_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	1.49106e-08
NZ_CP009533.1\|WP_043189084.1\|2005500_2006535_+\|NADP-dependent-oxidoreductase	gnl\|CDD\|176190	cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	0
NZ_CP009533.1\|WP_043189066.1\|1995930_1996854_+\|cell-division-protein-ZipA	gnl\|CDD\|234706	PRK00269, zipA, cell division protein ZipA; Reviewed.	5.80745e-163
NZ_CP009533.1\|WP_043189049.1\|1985347_1986655_-\|guanine-deaminase	gnl\|CDD\|236419	PRK09228, PRK09228, guanine deaminase; Provisional.	0
NZ_CP009533.1\|WP_043189089.1\|2008388_2008718_-\|YceK/YidQ-family-lipoprotein	gnl\|CDD\|369217	pfam07119, DUF1375, Protein of unknown function (DUF1375). This family consists of several hypothetical, putative lipoproteins of around 80 residues in length. Members of this family seem to be specific to the Class Gammaproteobacteria. The function of this family is unknown.	2.68979e-12
NZ_CP009533.1\|WP_043189045.1\|1983012_1984860_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173862	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0

>NZ_CP009533.1|WP_043189068.1|1997041_1999384_+|NAD-dependent-DNA-ligase-LigA
MTDATRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFRELKALEADHPNLITPDSPTQRVGNAALSAFTQVRHEIPMLSLGNAFEEVDLREFDRRVTEGLDLPTGDLFGSGAAIHYSCEPKLDGLAVSLLYQDGALVRGATRGDGTTGEDISVNVRTIRNVPLKLHGSGWPPVLEVRGEVFMSKAGFERLNASQMEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGIGQVTQDIATTHTGNLEQLKQWGMPISRELKVAENIEQCLEYYHDIGARRTQLPYEIDGVVFKVNSLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVMQVVTERRPENARLVHVPETCPVCGSHVERTQLIKRSKGKQTVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGEKSVEQLVDEGLVSSPADLYTLQFDDVVKLEGFAEVSSNNLLKAIEDSKRPSLARFIYALGIPDVGEETAKVLARSLGSLQRVSEALPQVLTYLPDVGLEVAFEIHSFFEDPHNRTVIQQLLERGLQLQEEGEVHPEYAASTTLAGMIAKLDISSVGPTGAEKLVAKLGSLNAIIAADGIDLRQALNTRQAEAVREYFKQPHHAETARAVEAQLQAFGMHWASEKKAVEGLPLAGQTWVLTGSLEQMSRDEAKQKLEALGAKVSGSVSAKTHTVVAGPGAGSKLAKASELGIKVLDEEQFLKFLASM
>NZ_CP009533.1|WP_043189066.1|1995930_1996854_+|cell-division-protein-ZipA
MEIGLREWLILIGIIVIAGILFDGWRRMRGGKGKLKFRLDRNINNLPEEDTGAEVLGPPRVLDTHKEPQLDEHDLPPMSAQRDGGSQRAKREPTADHADLNLTVEPDEIKEPREARPPKPAREPKPARPQPAMKAARDSHDDFASDGKGFSSSGAPAVEKDLPPVEEVLVISVISRSESGFRGPALLQNILESGLRFGDMDIFHRHESMAGNGEILFSMANAVKPGIFDLDDIDHFSTRAVSFFLGLPGPRHPKQAFDVMVAAARKLAHELDGELKDDQRSVLTAQTIEHYRQRIVEFERRALTHKR
>NZ_CP009533.1|WP_043189063.1|1992250_1995739_+|chromosome-segregation-protein-SMC
MRLKCIRLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGESMTDVIFNGSTSRKPVSQASIELVFDNSDSTLVGEYAAYAEISIRRKVTRESQNTYYLNGTKCRRRDITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRRETESRIRRTHENLARLTDLREELERQLERLHRQAQSAEKYQQYKAEERQLKAQLSALRWQTLNEQVGQREAVIADQEVAFEALVAEQRNADAGIERLRDGHHELSERFNTVQARFYSVGGDIARVEQNIQHGQQRLRQLQDDFKEAERARLETESHLGHDRTLLATLGEELEMLEPEQAISTEAAEEAAAALEEAETRMHGWQEQWDRFNTRSAEPRRQAEVQQARIAQLELSMQRLAERQRRQSEERELLAADPEDAAILELDEQLASSEMLIEEWTAQEQQQAEQLEATRQQLHEATQAQQQAQGELQRLNGRLASLEALQQAALDPGTGTAQWLDQQGLAQHPRLAEGLRVEPGWEQAVETVLGADLQAVLVDDLAGLDLANFEQGELRLVSATAGGAALADSLLHKVHSEVDLSPWLAGVRAVADLDTALALRNQLAPGESLVSQDGYWLGRHFLRVSRGNDASRGVLARGQELQALHLDVQAHEATLAQVQEQLLTCREQQQAQEQLREQLRRRIQDESRQQGELKARLSASRAKAEQLSLRRRRLDEELGELAEQRALEHEQVGESRLQLQDALDAMASDTEQREQLMAQRDELREGLERIRQDARQHKDRAHQLAVRLGSLRAQHDSTRQALERLQLQAERLTEKREQLTLGLEEGEAPLEELRLSLEGLLEQRMAVDDEMRHARLALDDADRELRDVEKRRTQAEQQSQVLRGQLEQHRLEWQGLSVRRKTLQEQLHADGYDLHGVLATLDVLLNEQQAEEELQRIDGRIQRLGAINLAAIDEYQQQSERKRYLDAQDADLAEALDTLENVIRKIDKETRSRFKDTFDQINAGLQALFPKVFGGGSAYLELTGEDLLDTGVTIMARPPGKKNSTIHLLSGGEKALTALALVFAIFKLNPAPFCMLDEVDAPLDDANVGRYARLVKEMSQTVQFIYITHNKIAMEMADQLMGVTMHEPGCSRLVAVDVEEALAMVEA
>NZ_CP009533.1|WP_043189060.1|1991588_1992248_+|GntR-family-transcriptional-regulator
MTFKAPDSLAEQIAHHLAERIISGELKPAERIQELKVTQALNVSRGSVREALLILERRHLVDILPRRGAQVSELSEHKVRSLCALMGEMYIMLGDAVAQRWKTEADLAPFLIIQGRLQTSFERQDINAFVEDSFNVMRAAYPFANNPYLQETIENLQPAMNRTYYLALEQRKASMSEYLALFGRLLQAVSARDPQLIRKVLGEYCQRSCELVLSALAVR
>NZ_CP009533.1|WP_043189057.1|1989878_1991333_-|xanthine-dehydrogenase-small-subunit
MIQFLLNQTLHTEHALDPNLTVLEYLRTDLARPGTKEGCASGDCGACTVVIGERVEDGGQPHIRYRSSNACLTFVSSLHGKQLLSVEDLKLQGRLHSVQQAMVDCHGSQCGFCTPGFVMSLFALQKNQPQANREQACEALSGNLCRCTGYRPILDAAAQACGGPALPDQFDSQQAQTLARLQAIAPARTDELHGGNNRCLVPLTVADLAELYSEQPEARLLAGGTDLALEVTQAHKVLPVMIYVGHVAEMKRIETFDDRLEIGAAMPLTDCYQALAAEYADFGHLLHRFASLQIRNQATLGGNIGNASPIGDSPPLLLALGAHVVLRKRERSRTLPLQDYFIDYRVTAREDGEFIEKIIVPRADARRVFRAYKVSKRLDDDISAVCAAFSLLIEDGRVHDVRIAYGGMAAIPKRAAGCEAALLDRPWTKATVEAACAALAEDFTPLSDFRASKQYRLLTAQNLLRKCFIELQSPHIQTRVSAHV
>NZ_CP009533.1|WP_043189054.1|1987510_1989886_-|xanthine-dehydrogenase-molybdopterin-binding-subunit
MSEHQAPDSQARMAELFAQGLTTGVGRGVKHDSADKHVTGEAVYIDDRLEFPNQLHVYARLSDRAHARILRIDTSACYDIPGVRLVITHEDIPGLKDIGPLLPGDPLLAIDKVEFVGQPVLAVAARDLDSARRAAMAAVIEYEDLPPVLDVVQALRQQHFVLDSHTHQRGDSAAALASAPHRLQGSLHIGGQEHFYLETQISSVMPTEDGGMIVYCSTQNPTEVQKLVAEVLDVSMSQVVVDMRRMGGGFGGKETQAASPACLCAVVAHLTGQPTKMRLPRVEDMLMTGKRHPFYIEYDVGFDDNGRLHGIDLDLAGNCGYSPDLSASIVDRAMFHADNAYYLGDATINGHRCKTHTASNTAYRGFGGPQGMVAIEEVMDRIARHLALDPLAVRKANYYGKTERNVTHYHQTVEHNLLEEITAELEASCDYEQRREAIRAFNADSPVLKKGLALTPVKFGISFTASFLNQAGALIHIYTDGSIHLNHGGTEMGQGLNVKVAQVVAEVFQVDIARIQITATNTDKVPNTSPTAASSGADLNGKAAQNAALILKQRLVEFAARHYRVSEEDVEFSNGHVRVRDQLLTFQSLVQQAWMGQVSLSSTGYYKTPKIHYDRSLARGRPFYYFAYGAACCEVLIDTLTGEYKLLRTDILHDVGASLNPAIDLGQVEGGFLQGVGWLTCEELVWSDQGKLLTSGPASYKIPAVADMPQDLRVQLVENRKNPEDTVFHSKAVGEPPFMLGIAAWCAIKDAVASLGDYRLQPNIDAPATPERVLWGCEQMRQAAPGSVRHD
>NZ_CP009533.1|WP_043189051.1|1986651_1987518_-|xanthine-dehydrogenase-accessory-protein-XdhC
MTDWIGALAEQQARGEACVLVTIIEEKGSTPRNAGAKMVVSDTALFDTIGGGHLEYKALHIAREMLAEGTRATRLERFSLGASLGQCCGGATVLLFEPVAQTQAQVVVFGAGHVGRALVPLLASLPCRVRWVDSRPEEFPASLPDGVCQVITDEPVDEVASLPVGSYCIVMTHDHSLDLELTRAILERNDFTWFGLIGSATKRARFEHRLRDRGIAPSVVQRMRCPMGLEAVKGKLPMEIAVSIAAEIIATYNAHFGARAEPGTASSPGVAQLLPRSRRSPAALRDAP
>NZ_CP009533.1|WP_043189049.1|1985347_1986655_-|guanine-deaminase
MSLTCKAYRAAILHSLDDPALVGVQASYEYFADGVLVVEDGRISALGAASEVLPTLSDDVEVTHYPDALITPGFIDTHIHFPQTGMVGSYGEQLLDWLNEYTFPCEGQFADKAHADGVAQIFLKELLRNGTTTALVFGSVHPESVDALFEAAQALDLRLIAGKVMMDRNAPDYLTDTAQSSYAQSKALIERWHGKGRLHYAVTPRFAPTSSEAQLTLAGQLLREYPDVYLQTHLSENLQEIEWVKALFPERGNYLDVYDHYQLLGERSVFAHGVHLCDAECERLAETGSAIAFCPTSNLFLGSGLFNLPQAERFKVNVGLGTDVGAGTSFSLLHTLNEAYKVMQLQGEKLNPFKSLYLATLGGARALRLEDRVGTLQPGTDADFVVLDYHATPLLSYRIAQAKTFEEVLFVLMTLGDDRAVLQTYAAGRRVHSRD
>NZ_CP009533.1|WP_043189047.1|1984977_1985259_-|peptidylprolyl-isomerase
MAKATARHILVADEAKCNDLKAQIEGGADFAEIAKANSTCPSSRQGGDLGSFGPGQMVKEFDTVVFSAPINVVQGPVKTQFGYHLLEVTSRQD
>NZ_CP009533.1|WP_043189045.1|1983012_1984860_-|ABC-transporter-substrate-binding-protein
MRAVFLSIVLCALFTTATGAQAAAQHALTVYGEAPRYPADFQHFDYVNPDAPKGGSLRRSAIEIGQYDHILPYIDKGIGVSQVDGLLYSPLAVRSLDEPYTVYGLVAERMERGDDGLWLRFYLNPKAVFADGQPITAQDVRYTFELLMREGSLGYRTQFANVADVQVEGPRQVRFNFKNAESRTLPLDLATLPVLPEHWWKTRDFASGGGFEAPLGSGPYAIEKIDNGRSITFKRNPDWWGKDLPEARGMYNFDRFSIEYFGDTDVARQVLRGGGYDYNREFSATAYTIGYNGPALDDGRLQRAHLAKAGLQAAQGFVFNLQRPVFQDRRVRQALAMLWDFEWSNRQMMRGMYIRQQSFFSNSPLAARQLPSDSELKILEKLRGQVPDEVFTQVFHAPVSDGSGLIRDKQLQALRLLQLAGWHADGDRLVNADGEPLSFTFLNTQNGLERLLLPWKRNLAQIGITMEIRRIDSSQYVNRLMARDYDMIITGYPVTPTPGIELYGFFGSGVATDPGSNNLMVLKNPAVDELINGLGAASTQTQMRDYAHALDRVLQWNYYWVPNYYPPGTSTVWWNRFGMPATPAANDPAIETWWEVSPTALTTEQMRDRLTGKTH
>NZ_CP009533.1|WP_043189071.1|1999939_2001106_+|putative-zinc-binding-metallopeptidase
MYRFFEQLSTRITAPFTKPDNRHSKVWECTCGQSIFFRNSQCLACHALLGYWPAKNVLSTLDAGPEAGSWRLHAAPDAGLFRRCANLDTPAACNWLVPAEQGAAALCTACSLNRTIPDLSVPENPEHWRKVETAKRRLIAQLINLGLPVIAKTEDEATGLAFDFIGTDLNGNAPTTGHANGLVTLDIKEADDAHREKVRVQMREPYRTLLGHFRHEVGHYYWDRLIADTHWVADYRRLFGDESQSYADALQRHYDQGAPADWQQNFVSAYATMHPWEDWAETWAHYLHMMDAVDTALGFGMSAKEMDLDYTPFPLTTLYDPDHTSGPAFLAFVNAWIELAGMLNELSRAMGQPDFYPFVLPPAVIAKLHFIHVVVQEAGGRADDVLQV
>NZ_CP009533.1|WP_043189073.1|2001385_2001868_-|GNAT-family-N-acetyltransferase
MNVLTPYPYLSPAQLQQLMDIEIRPEQKQYSGDVDMAMYTLLGCMDGEIQGFALLVDEVPKAFLLLKHGRYVPEWAHPGSATLHALQVDWRMQGRGLGRACLEGLPDAARGAWPGVQQLELSVDADNVAGMGLYKALGWVDRGEAYRGRIGYERRFVLVL
>NZ_CP009533.1|WP_084139768.1|2003689_2004649_+|hypothetical-protein
MKRQTTPTAGLQRSSPLWERALPAKNPRRSKDRPPPQPASSGTAPCGSGSAREEAAAQPQAAPEPIIDLPWNDPVAPAVVPTQEPILDIVGEQPALTPMPAPTPASAVPDAPETEPEPSEDDAEPVDYTPAGMDRDDEPPLDEDYYAPETDGAAYSYLDELASETVHDAPVEAEPEVLPAAQPATGLALQWLELFPKLPISGMTGSIAANCTLIAMEGDDWLLHLDPAQSALFNSTQQRRLNDALNQYHGRPISLTIELIRPEQETPAQAAARWRANRQADAEQSIHQDPYIQQMLQQFGAIIRDDTIEPVEAVASPTR
>NZ_CP009533.1|WP_043189078.1|2004723_2005050_+|YbaB/EbfC-family-nucleoid-associated-protein
MMKGGMAGLMKQAQQMQEKMAQMQEELAKAEVTGQSGAGLVSVVMTGRHDVKRVSLDDSLMQEDKDVLEDLIAAAVNDAVRKIEANSQDKMSGMTSGMQLPPGFKMPF
>NZ_CP009533.1|WP_043189084.1|2005500_2006535_+|NADP-dependent-oxidoreductase
MSQDLTLNQRFVLASRPTGAPTPENFRLEREALPDLEDGQVLLRTLYLSLDPYMRGRMSDAPSYAAPVEIDEVMTGGTVSRVETSKHPKFREGDLVVGMTGWQTHCISDGSNLTPLPAGIPSPSMALGVLGMPGMTAYMGLTHIGQPKEGETLVVAAASGAVGSVVGQVGKIKGLKVVGIAGGPDKCRYVVEELGFDACVDHKSDTFAEDLAKACDQGIDIYFENVGGKVFDAVMPLLNARARIPVCGLIAGYNATDLPEGPDRFALLPRTLLTKRIRMQGFIVFDDFGDRHAEFFSAMVPWVRDGKIKFREDVVEGLERAPEAFIGLLQGHNFGKLVVKVSEV
>NZ_CP009533.1|WP_043189087.1|2006600_2007203_+|recombination-protein-RecR
MSFSPLIRQLIDSLRTLPGVGQKSAQRMALQLLERDRSGGSRLAQALSQAMEGVGHCRQCRTLTEEELCPQCADPRRDDTLLCVVEGPMDVYAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPQLMARIDEQGTFAEVILATNPTVEGEATAHYIAQLLAKKGLIASRIAHGVPLGGELELVDGGTLAHSFAGRRPITL
>NZ_CP009533.1|WP_043193511.1|2007491_2008370_+|PhzF-family-phenazine-biosynthesis-protein
MHRLAFKQVDVFTHQRFKGNPLAVILKAESLTREQMQQIAHWNNLSETTFVLPATRPEADYRVRIFTPSSELPFAGHATIGSAHALMEAGLIEPRNGRLVQECPVGLINVDVTSQPDGSRLITFELPPATIQPVNDSDYRELQAVLGVSVVRDRRPCFVTVGPRWLVVQLRDAQTVLAVIPDLARMAINDHRTSTTGVVIFGPHPEGSNEHIEVRTFAPTCGIVEDAACGSGGGAVAAFIRATGQTASFGSQIRIAQGAALGRAGKLHLSISDESIKVSGACVTCLDGFLKP
>NZ_CP009533.1|WP_043189089.1|2008388_2008718_-|YceK/YidQ-family-lipoprotein
MKAVVGVLLAGLLAGCGTINTVFRDDVVTSDNLKEAESFCAAVPRVYSGVVYDFCLLHGKEARPGQTRDGAQLGFVAVDMAVSAVFDTLMLPYTLYRQHTDGGIEVVGR
>NZ_CP009533.1|WP_043193512.1|2009090_2010161_+|dTDP-glucose-4,6-dehydratase
MKILVTGGAGFIGSAVIRHILANTDDAVVNVDKLTYAGNLDSLMGSERTPRYAFEHVDICDRAQMDRVFAEHRPDRVMHLAAESHVDRSITGPAAFVETNVIGTYTLLEASRQYWSQLDAEKQAAFRFHHISTDEVYGDLEGPEDLFTETTPYQPSSPYSASKASSDHLVRAWQRTYGLPTLITNCSNNYGPCHFPEKLIPLIILNALEGKALPIYGKGNQIRDWLYVEDHARALYRVVTEGEVGETYNIGGHNEKQNIEVVHTVCALLDELCPQSPHRPHAQLITHVQDRPGHDVRYAIDASKIQRELGWTPVETFESGIRKTVQWYLDNPEWVNRVKSGAYQQWIDTNYQGREL
>NZ_CP009533.1|WP_043189091.1|2010157_2011054_+|dTDP-4-dehydrorhamnose-reductase
MKILLLGKNGQVGWELQRALAPLGNVVALGRNIDEAGLCGDLAALEGLADTVRRIAPDVIVNAAAYTAVDKAETEKDTADLINHRASGMLAREALELDAWLVHYSTDYVFDGTGDKPWLETDTTVPVNYYGASKLAGEEAIRQSGCKHLIFRTSWVYAARGNNFAKTMLRLAKDRKSLSVISDQIGAPTGAELLADVVAHAIPMAVASPDLAGTYHLAATGETSWHAFAKLVIENARRQGTKLAVEAVEAIPTSAYPTPARRPLNSRLDTTKLTERFGLTLPHWEVGVKRMLAEISTK

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Crispr_ID: NZ_CP009533_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009533_6

2001158-2001275

Orphan

Consensus_repeat	Method
AGCGGGCTCTGCCCGCGAAGAGGCCCTCCCAGTCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009533_6

>merge|NZ_CP009533|6|2001158-2001275|CRISPRCasFinder
AGCGGGCTCTGCCCGCGAAGAGGCCCTCCCAGTCACCCCCCAGTATAGGAACGGGCCACTGTGGAAGCCCCCCACTGTGGAAGCGGGCTCTGCCCGCGAAGACGCCCTCCCAGTCACC

>NZ_CP009533|6|6|2001158-2001275|CRISPRCasFinder
AGCGGGCTCTGCCCGCGAAGAGGCCCTCCCAGTCACC	CCCCAGTATAGGAACGGGCCACTGTGGAAGCCCCCCACTGTGGA
AGCGGGCTCTGCCCGCGAAGACGCCCTCCCAGTCACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009533.1\|WP_043189047.1\|1984977_1985259_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|185338
NZ_CP009533.1\|WP_043189078.1\|2004723_2005050_+\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_CP009533.1\|WP_043189087.1\|2006600_2007203_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP009533.1\|WP_043189091.1\|2010157_2011054_+\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	gnl\|CDD\|182184
NZ_CP009533.1\|WP_043193512.1\|2009090_2010161_+\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|236649
NZ_CP009533.1\|WP_043193511.1\|2007491_2008370_+\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_CP009533.1\|WP_084139768.1\|2003689_2004649_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236138
NZ_CP009533.1\|WP_043189071.1\|1999939_2001106_+\|putative-zinc-binding-metallopeptidase	unknown	unknown	gnl\|CDD\|379751
NZ_CP009533.1\|WP_043189063.1\|1992250_1995739_+\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
NZ_CP009533.1\|WP_043189073.1\|2001385_2001868_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NZ_CP009533.1\|WP_043189051.1\|1986651_1987518_-\|xanthine-dehydrogenase-accessory-protein-XdhC	unknown	unknown	gnl\|CDD\|274366
NZ_CP009533.1\|WP_043189054.1\|1987510_1989886_-\|xanthine-dehydrogenase-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|274367
NZ_CP009533.1\|WP_043189094.1\|2011311_2012757_+\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|273648
NZ_CP009533.1\|WP_043189060.1\|1991588_1992248_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP009533.1\|WP_043189084.1\|2005500_2006535_+\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176190
NZ_CP009533.1\|WP_043189066.1\|1995930_1996854_+\|cell-division-protein-ZipA	unknown	unknown	gnl\|CDD\|234706
NZ_CP009533.1\|WP_043189057.1\|1989878_1991333_-\|xanthine-dehydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|274365
NZ_CP009533.1\|WP_043189089.1\|2008388_2008718_-\|YceK/YidQ-family-lipoprotein	unknown	unknown	gnl\|CDD\|369217
NZ_CP009533.1\|WP_043189068.1\|1997041_1999384_+\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP009533.1\|WP_043189049.1\|1985347_1986655_-\|guanine-deaminase	unknown	unknown	gnl\|CDD\|236419

Protein	Function_ID	Function_description	E-value
NZ_CP009533.1\|WP_043189047.1\|1984977_1985259_-\|peptidylprolyl-isomerase	gnl\|CDD\|185338	PRK15441, PRK15441, peptidyl-prolyl cis-trans isomerase C; Provisional.	1.79467e-31
NZ_CP009533.1\|WP_043189078.1\|2004723_2005050_+\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	1.37585e-40
NZ_CP009533.1\|WP_043189087.1\|2006600_2007203_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	2.25002e-114
NZ_CP009533.1\|WP_043189091.1\|2010157_2011054_+\|dTDP-4-dehydrorhamnose-reductase	gnl\|CDD\|182184	PRK09987, PRK09987, dTDP-4-dehydrorhamnose reductase; Provisional.	1.10407e-151
NZ_CP009533.1\|WP_043193512.1\|2009090_2010161_+\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|236649	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional.	0
NZ_CP009533.1\|WP_043193511.1\|2007491_2008370_+\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	3.23549e-81
NZ_CP009533.1\|WP_084139768.1\|2003689_2004649_+\|hypothetical-protein	gnl\|CDD\|236138	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated.	2.9522e-64
NZ_CP009533.1\|WP_043189071.1\|1999939_2001106_+\|putative-zinc-binding-metallopeptidase	gnl\|CDD\|379751	pfam15887, Peptidase_Mx, Putative zinc-binding metallo-peptidase. This family has a highly conserved HHExxH motif with a highly conserved ED pairing downstream. HExxH is indicative of a zinc-binding metallo-peptidase.	5.39467e-148
NZ_CP009533.1\|WP_043189063.1\|1992250_1995739_+\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NZ_CP009533.1\|WP_043189073.1\|2001385_2001868_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	1.49106e-08
NZ_CP009533.1\|WP_043189051.1\|1986651_1987518_-\|xanthine-dehydrogenase-accessory-protein-XdhC	gnl\|CDD\|274366	TIGR02964, conserved_hypothetical_protein, xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. [Protein fate, Protein folding and stabilization, Purines, pyrimidines, nucleosides, and nucleotides, Other].	5.47915e-126
NZ_CP009533.1\|WP_043189054.1\|1987510_1989886_-\|xanthine-dehydrogenase-molybdopterin-binding-subunit	gnl\|CDD\|274367	TIGR02965, xanthine_dehydrogenase, xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP009533.1\|WP_043189094.1\|2011311_2012757_+\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	gnl\|CDD\|273648	TIGR01479, Mannose-1-phosphate_guanylyltransferase, mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_CP009533.1\|WP_043189060.1\|1991588_1992248_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	2.16511e-29
NZ_CP009533.1\|WP_043189084.1\|2005500_2006535_+\|NADP-dependent-oxidoreductase	gnl\|CDD\|176190	cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	0
NZ_CP009533.1\|WP_043189066.1\|1995930_1996854_+\|cell-division-protein-ZipA	gnl\|CDD\|234706	PRK00269, zipA, cell division protein ZipA; Reviewed.	5.80745e-163
NZ_CP009533.1\|WP_043189057.1\|1989878_1991333_-\|xanthine-dehydrogenase-small-subunit	gnl\|CDD\|274365	TIGR02963, Includes:_Xanthine_dehydrogenase, xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP009533.1\|WP_043189089.1\|2008388_2008718_-\|YceK/YidQ-family-lipoprotein	gnl\|CDD\|369217	pfam07119, DUF1375, Protein of unknown function (DUF1375). This family consists of several hypothetical, putative lipoproteins of around 80 residues in length. Members of this family seem to be specific to the Class Gammaproteobacteria. The function of this family is unknown.	2.68979e-12
NZ_CP009533.1\|WP_043189068.1\|1997041_1999384_+\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP009533.1\|WP_043189049.1\|1985347_1986655_-\|guanine-deaminase	gnl\|CDD\|236419	PRK09228, PRK09228, guanine deaminase; Provisional.	0

>NZ_CP009533.1|WP_043189071.1|1999939_2001106_+|putative-zinc-binding-metallopeptidase
MYRFFEQLSTRITAPFTKPDNRHSKVWECTCGQSIFFRNSQCLACHALLGYWPAKNVLSTLDAGPEAGSWRLHAAPDAGLFRRCANLDTPAACNWLVPAEQGAAALCTACSLNRTIPDLSVPENPEHWRKVETAKRRLIAQLINLGLPVIAKTEDEATGLAFDFIGTDLNGNAPTTGHANGLVTLDIKEADDAHREKVRVQMREPYRTLLGHFRHEVGHYYWDRLIADTHWVADYRRLFGDESQSYADALQRHYDQGAPADWQQNFVSAYATMHPWEDWAETWAHYLHMMDAVDTALGFGMSAKEMDLDYTPFPLTTLYDPDHTSGPAFLAFVNAWIELAGMLNELSRAMGQPDFYPFVLPPAVIAKLHFIHVVVQEAGGRADDVLQV
>NZ_CP009533.1|WP_043189068.1|1997041_1999384_+|NAD-dependent-DNA-ligase-LigA
MTDATRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFRELKALEADHPNLITPDSPTQRVGNAALSAFTQVRHEIPMLSLGNAFEEVDLREFDRRVTEGLDLPTGDLFGSGAAIHYSCEPKLDGLAVSLLYQDGALVRGATRGDGTTGEDISVNVRTIRNVPLKLHGSGWPPVLEVRGEVFMSKAGFERLNASQMEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGIGQVTQDIATTHTGNLEQLKQWGMPISRELKVAENIEQCLEYYHDIGARRTQLPYEIDGVVFKVNSLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVMQVVTERRPENARLVHVPETCPVCGSHVERTQLIKRSKGKQTVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGEKSVEQLVDEGLVSSPADLYTLQFDDVVKLEGFAEVSSNNLLKAIEDSKRPSLARFIYALGIPDVGEETAKVLARSLGSLQRVSEALPQVLTYLPDVGLEVAFEIHSFFEDPHNRTVIQQLLERGLQLQEEGEVHPEYAASTTLAGMIAKLDISSVGPTGAEKLVAKLGSLNAIIAADGIDLRQALNTRQAEAVREYFKQPHHAETARAVEAQLQAFGMHWASEKKAVEGLPLAGQTWVLTGSLEQMSRDEAKQKLEALGAKVSGSVSAKTHTVVAGPGAGSKLAKASELGIKVLDEEQFLKFLASM
>NZ_CP009533.1|WP_043189066.1|1995930_1996854_+|cell-division-protein-ZipA
MEIGLREWLILIGIIVIAGILFDGWRRMRGGKGKLKFRLDRNINNLPEEDTGAEVLGPPRVLDTHKEPQLDEHDLPPMSAQRDGGSQRAKREPTADHADLNLTVEPDEIKEPREARPPKPAREPKPARPQPAMKAARDSHDDFASDGKGFSSSGAPAVEKDLPPVEEVLVISVISRSESGFRGPALLQNILESGLRFGDMDIFHRHESMAGNGEILFSMANAVKPGIFDLDDIDHFSTRAVSFFLGLPGPRHPKQAFDVMVAAARKLAHELDGELKDDQRSVLTAQTIEHYRQRIVEFERRALTHKR
>NZ_CP009533.1|WP_043189063.1|1992250_1995739_+|chromosome-segregation-protein-SMC
MRLKCIRLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGESMTDVIFNGSTSRKPVSQASIELVFDNSDSTLVGEYAAYAEISIRRKVTRESQNTYYLNGTKCRRRDITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRRETESRIRRTHENLARLTDLREELERQLERLHRQAQSAEKYQQYKAEERQLKAQLSALRWQTLNEQVGQREAVIADQEVAFEALVAEQRNADAGIERLRDGHHELSERFNTVQARFYSVGGDIARVEQNIQHGQQRLRQLQDDFKEAERARLETESHLGHDRTLLATLGEELEMLEPEQAISTEAAEEAAAALEEAETRMHGWQEQWDRFNTRSAEPRRQAEVQQARIAQLELSMQRLAERQRRQSEERELLAADPEDAAILELDEQLASSEMLIEEWTAQEQQQAEQLEATRQQLHEATQAQQQAQGELQRLNGRLASLEALQQAALDPGTGTAQWLDQQGLAQHPRLAEGLRVEPGWEQAVETVLGADLQAVLVDDLAGLDLANFEQGELRLVSATAGGAALADSLLHKVHSEVDLSPWLAGVRAVADLDTALALRNQLAPGESLVSQDGYWLGRHFLRVSRGNDASRGVLARGQELQALHLDVQAHEATLAQVQEQLLTCREQQQAQEQLREQLRRRIQDESRQQGELKARLSASRAKAEQLSLRRRRLDEELGELAEQRALEHEQVGESRLQLQDALDAMASDTEQREQLMAQRDELREGLERIRQDARQHKDRAHQLAVRLGSLRAQHDSTRQALERLQLQAERLTEKREQLTLGLEEGEAPLEELRLSLEGLLEQRMAVDDEMRHARLALDDADRELRDVEKRRTQAEQQSQVLRGQLEQHRLEWQGLSVRRKTLQEQLHADGYDLHGVLATLDVLLNEQQAEEELQRIDGRIQRLGAINLAAIDEYQQQSERKRYLDAQDADLAEALDTLENVIRKIDKETRSRFKDTFDQINAGLQALFPKVFGGGSAYLELTGEDLLDTGVTIMARPPGKKNSTIHLLSGGEKALTALALVFAIFKLNPAPFCMLDEVDAPLDDANVGRYARLVKEMSQTVQFIYITHNKIAMEMADQLMGVTMHEPGCSRLVAVDVEEALAMVEA
>NZ_CP009533.1|WP_043189060.1|1991588_1992248_+|GntR-family-transcriptional-regulator
MTFKAPDSLAEQIAHHLAERIISGELKPAERIQELKVTQALNVSRGSVREALLILERRHLVDILPRRGAQVSELSEHKVRSLCALMGEMYIMLGDAVAQRWKTEADLAPFLIIQGRLQTSFERQDINAFVEDSFNVMRAAYPFANNPYLQETIENLQPAMNRTYYLALEQRKASMSEYLALFGRLLQAVSARDPQLIRKVLGEYCQRSCELVLSALAVR
>NZ_CP009533.1|WP_043189057.1|1989878_1991333_-|xanthine-dehydrogenase-small-subunit
MIQFLLNQTLHTEHALDPNLTVLEYLRTDLARPGTKEGCASGDCGACTVVIGERVEDGGQPHIRYRSSNACLTFVSSLHGKQLLSVEDLKLQGRLHSVQQAMVDCHGSQCGFCTPGFVMSLFALQKNQPQANREQACEALSGNLCRCTGYRPILDAAAQACGGPALPDQFDSQQAQTLARLQAIAPARTDELHGGNNRCLVPLTVADLAELYSEQPEARLLAGGTDLALEVTQAHKVLPVMIYVGHVAEMKRIETFDDRLEIGAAMPLTDCYQALAAEYADFGHLLHRFASLQIRNQATLGGNIGNASPIGDSPPLLLALGAHVVLRKRERSRTLPLQDYFIDYRVTAREDGEFIEKIIVPRADARRVFRAYKVSKRLDDDISAVCAAFSLLIEDGRVHDVRIAYGGMAAIPKRAAGCEAALLDRPWTKATVEAACAALAEDFTPLSDFRASKQYRLLTAQNLLRKCFIELQSPHIQTRVSAHV
>NZ_CP009533.1|WP_043189054.1|1987510_1989886_-|xanthine-dehydrogenase-molybdopterin-binding-subunit
MSEHQAPDSQARMAELFAQGLTTGVGRGVKHDSADKHVTGEAVYIDDRLEFPNQLHVYARLSDRAHARILRIDTSACYDIPGVRLVITHEDIPGLKDIGPLLPGDPLLAIDKVEFVGQPVLAVAARDLDSARRAAMAAVIEYEDLPPVLDVVQALRQQHFVLDSHTHQRGDSAAALASAPHRLQGSLHIGGQEHFYLETQISSVMPTEDGGMIVYCSTQNPTEVQKLVAEVLDVSMSQVVVDMRRMGGGFGGKETQAASPACLCAVVAHLTGQPTKMRLPRVEDMLMTGKRHPFYIEYDVGFDDNGRLHGIDLDLAGNCGYSPDLSASIVDRAMFHADNAYYLGDATINGHRCKTHTASNTAYRGFGGPQGMVAIEEVMDRIARHLALDPLAVRKANYYGKTERNVTHYHQTVEHNLLEEITAELEASCDYEQRREAIRAFNADSPVLKKGLALTPVKFGISFTASFLNQAGALIHIYTDGSIHLNHGGTEMGQGLNVKVAQVVAEVFQVDIARIQITATNTDKVPNTSPTAASSGADLNGKAAQNAALILKQRLVEFAARHYRVSEEDVEFSNGHVRVRDQLLTFQSLVQQAWMGQVSLSSTGYYKTPKIHYDRSLARGRPFYYFAYGAACCEVLIDTLTGEYKLLRTDILHDVGASLNPAIDLGQVEGGFLQGVGWLTCEELVWSDQGKLLTSGPASYKIPAVADMPQDLRVQLVENRKNPEDTVFHSKAVGEPPFMLGIAAWCAIKDAVASLGDYRLQPNIDAPATPERVLWGCEQMRQAAPGSVRHD
>NZ_CP009533.1|WP_043189051.1|1986651_1987518_-|xanthine-dehydrogenase-accessory-protein-XdhC
MTDWIGALAEQQARGEACVLVTIIEEKGSTPRNAGAKMVVSDTALFDTIGGGHLEYKALHIAREMLAEGTRATRLERFSLGASLGQCCGGATVLLFEPVAQTQAQVVVFGAGHVGRALVPLLASLPCRVRWVDSRPEEFPASLPDGVCQVITDEPVDEVASLPVGSYCIVMTHDHSLDLELTRAILERNDFTWFGLIGSATKRARFEHRLRDRGIAPSVVQRMRCPMGLEAVKGKLPMEIAVSIAAEIIATYNAHFGARAEPGTASSPGVAQLLPRSRRSPAALRDAP
>NZ_CP009533.1|WP_043189049.1|1985347_1986655_-|guanine-deaminase
MSLTCKAYRAAILHSLDDPALVGVQASYEYFADGVLVVEDGRISALGAASEVLPTLSDDVEVTHYPDALITPGFIDTHIHFPQTGMVGSYGEQLLDWLNEYTFPCEGQFADKAHADGVAQIFLKELLRNGTTTALVFGSVHPESVDALFEAAQALDLRLIAGKVMMDRNAPDYLTDTAQSSYAQSKALIERWHGKGRLHYAVTPRFAPTSSEAQLTLAGQLLREYPDVYLQTHLSENLQEIEWVKALFPERGNYLDVYDHYQLLGERSVFAHGVHLCDAECERLAETGSAIAFCPTSNLFLGSGLFNLPQAERFKVNVGLGTDVGAGTSFSLLHTLNEAYKVMQLQGEKLNPFKSLYLATLGGARALRLEDRVGTLQPGTDADFVVLDYHATPLLSYRIAQAKTFEEVLFVLMTLGDDRAVLQTYAAGRRVHSRD
>NZ_CP009533.1|WP_043189047.1|1984977_1985259_-|peptidylprolyl-isomerase
MAKATARHILVADEAKCNDLKAQIEGGADFAEIAKANSTCPSSRQGGDLGSFGPGQMVKEFDTVVFSAPINVVQGPVKTQFGYHLLEVTSRQD
>NZ_CP009533.1|WP_043189073.1|2001385_2001868_-|GNAT-family-N-acetyltransferase
MNVLTPYPYLSPAQLQQLMDIEIRPEQKQYSGDVDMAMYTLLGCMDGEIQGFALLVDEVPKAFLLLKHGRYVPEWAHPGSATLHALQVDWRMQGRGLGRACLEGLPDAARGAWPGVQQLELSVDADNVAGMGLYKALGWVDRGEAYRGRIGYERRFVLVL
>NZ_CP009533.1|WP_084139768.1|2003689_2004649_+|hypothetical-protein
MKRQTTPTAGLQRSSPLWERALPAKNPRRSKDRPPPQPASSGTAPCGSGSAREEAAAQPQAAPEPIIDLPWNDPVAPAVVPTQEPILDIVGEQPALTPMPAPTPASAVPDAPETEPEPSEDDAEPVDYTPAGMDRDDEPPLDEDYYAPETDGAAYSYLDELASETVHDAPVEAEPEVLPAAQPATGLALQWLELFPKLPISGMTGSIAANCTLIAMEGDDWLLHLDPAQSALFNSTQQRRLNDALNQYHGRPISLTIELIRPEQETPAQAAARWRANRQADAEQSIHQDPYIQQMLQQFGAIIRDDTIEPVEAVASPTR
>NZ_CP009533.1|WP_043189078.1|2004723_2005050_+|YbaB/EbfC-family-nucleoid-associated-protein
MMKGGMAGLMKQAQQMQEKMAQMQEELAKAEVTGQSGAGLVSVVMTGRHDVKRVSLDDSLMQEDKDVLEDLIAAAVNDAVRKIEANSQDKMSGMTSGMQLPPGFKMPF
>NZ_CP009533.1|WP_043189084.1|2005500_2006535_+|NADP-dependent-oxidoreductase
MSQDLTLNQRFVLASRPTGAPTPENFRLEREALPDLEDGQVLLRTLYLSLDPYMRGRMSDAPSYAAPVEIDEVMTGGTVSRVETSKHPKFREGDLVVGMTGWQTHCISDGSNLTPLPAGIPSPSMALGVLGMPGMTAYMGLTHIGQPKEGETLVVAAASGAVGSVVGQVGKIKGLKVVGIAGGPDKCRYVVEELGFDACVDHKSDTFAEDLAKACDQGIDIYFENVGGKVFDAVMPLLNARARIPVCGLIAGYNATDLPEGPDRFALLPRTLLTKRIRMQGFIVFDDFGDRHAEFFSAMVPWVRDGKIKFREDVVEGLERAPEAFIGLLQGHNFGKLVVKVSEV
>NZ_CP009533.1|WP_043189087.1|2006600_2007203_+|recombination-protein-RecR
MSFSPLIRQLIDSLRTLPGVGQKSAQRMALQLLERDRSGGSRLAQALSQAMEGVGHCRQCRTLTEEELCPQCADPRRDDTLLCVVEGPMDVYAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPQLMARIDEQGTFAEVILATNPTVEGEATAHYIAQLLAKKGLIASRIAHGVPLGGELELVDGGTLAHSFAGRRPITL
>NZ_CP009533.1|WP_043193511.1|2007491_2008370_+|PhzF-family-phenazine-biosynthesis-protein
MHRLAFKQVDVFTHQRFKGNPLAVILKAESLTREQMQQIAHWNNLSETTFVLPATRPEADYRVRIFTPSSELPFAGHATIGSAHALMEAGLIEPRNGRLVQECPVGLINVDVTSQPDGSRLITFELPPATIQPVNDSDYRELQAVLGVSVVRDRRPCFVTVGPRWLVVQLRDAQTVLAVIPDLARMAINDHRTSTTGVVIFGPHPEGSNEHIEVRTFAPTCGIVEDAACGSGGGAVAAFIRATGQTASFGSQIRIAQGAALGRAGKLHLSISDESIKVSGACVTCLDGFLKP
>NZ_CP009533.1|WP_043189089.1|2008388_2008718_-|YceK/YidQ-family-lipoprotein
MKAVVGVLLAGLLAGCGTINTVFRDDVVTSDNLKEAESFCAAVPRVYSGVVYDFCLLHGKEARPGQTRDGAQLGFVAVDMAVSAVFDTLMLPYTLYRQHTDGGIEVVGR
>NZ_CP009533.1|WP_043193512.1|2009090_2010161_+|dTDP-glucose-4,6-dehydratase
MKILVTGGAGFIGSAVIRHILANTDDAVVNVDKLTYAGNLDSLMGSERTPRYAFEHVDICDRAQMDRVFAEHRPDRVMHLAAESHVDRSITGPAAFVETNVIGTYTLLEASRQYWSQLDAEKQAAFRFHHISTDEVYGDLEGPEDLFTETTPYQPSSPYSASKASSDHLVRAWQRTYGLPTLITNCSNNYGPCHFPEKLIPLIILNALEGKALPIYGKGNQIRDWLYVEDHARALYRVVTEGEVGETYNIGGHNEKQNIEVVHTVCALLDELCPQSPHRPHAQLITHVQDRPGHDVRYAIDASKIQRELGWTPVETFESGIRKTVQWYLDNPEWVNRVKSGAYQQWIDTNYQGREL
>NZ_CP009533.1|WP_043189091.1|2010157_2011054_+|dTDP-4-dehydrorhamnose-reductase
MKILLLGKNGQVGWELQRALAPLGNVVALGRNIDEAGLCGDLAALEGLADTVRRIAPDVIVNAAAYTAVDKAETEKDTADLINHRASGMLAREALELDAWLVHYSTDYVFDGTGDKPWLETDTTVPVNYYGASKLAGEEAIRQSGCKHLIFRTSWVYAARGNNFAKTMLRLAKDRKSLSVISDQIGAPTGAELLADVVAHAIPMAVASPDLAGTYHLAATGETSWHAFAKLVIENARRQGTKLAVEAVEAIPTSAYPTPARRPLNSRLDTTKLTERFGLTLPHWEVGVKRMLAEISTK
>NZ_CP009533.1|WP_043189094.1|2011311_2012757_+|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase
MNLIPVILSGGVGSRLWPVSREAHPKPFMALPDGQNLIQKTFLRAAKLEGVSEVLTVTNRELLFKTEDEYRTVNKTGHAQGFILEPFGRNTAAAVAMAALQLNDSHGPDAHMLVLAADHLIQNEAAFAAAVAKAVKLSADGWLVTFGIQPQYPETGFGYIEAGVGTGLDGTLKVARFVEKPDLETAKGYVAAGNYFWNSGMFCFKVGSVLEELKKHAPDVLAAAAAVKDASRLTEAPNYRCLALDADAFAQVPDISVDYALMERSDKVATVPCDIGWSDIGSWNAVSELTEADAQGNRFEGEVLSHNARNNFVHSEDRLTALVGVDDLLVIDTPDALMISHKDHCQDVKHIVGQLKASGHHLHKLHRTVHRPWGTYTTLEEGERFKIKRIVVKPQASLSLQMHHHRSEHWIVVSGMAVVVNDDRELMLNTNESTFIRAGHQHRLKNPGVIDLVLIEVQSGDYLGEDDIVRFEDVYGRVDKA

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Crispr_ID: NZ_CP009533_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009533_7

2003682-2003815

Orphan

Consensus_repeat	Method
CCCCGCAGATCAAAAGACAGACCACCCCCACAGCCGGCCTCCAGCGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009533_7

>merge|NZ_CP009533|7|2003682-2003815|CRISPRCasFinder
CCCCGCAGATCAAAAGACAGACCACCCCCACAGCCGGCCTCCAGCGGAGCAGCCCCCTGTGGGAGCGGGCTCTGCCCGCGAAGAATCCCCGCAGATCAAAAGACAGACCACCCCCACAGCCCGCCTCCAGCGGA

>NZ_CP009533|7|7|2003682-2003815|CRISPRCasFinder
CCCCGCAGATCAAAAGACAGACCACCCCCACAGCCGGCCTCCAGCGGA	GCAGCCCCCTGTGGGAGCGGGCTCTGCCCGCGAAGAAT
CCCCGCAGATCAAAAGACAGACCACCCCCACAGCCCGCCTCCAGCGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009533.1\|WP_043189078.1\|2004723_2005050_+\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_CP009533.1\|WP_043189089.1\|2008388_2008718_-\|YceK/YidQ-family-lipoprotein	unknown	unknown	gnl\|CDD\|369217
NZ_CP009533.1\|WP_043189091.1\|2010157_2011054_+\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	gnl\|CDD\|182184
NZ_CP009533.1\|WP_043193512.1\|2009090_2010161_+\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|236649
NZ_CP009533.1\|WP_043193511.1\|2007491_2008370_+\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_CP009533.1\|WP_043189087.1\|2006600_2007203_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP009533.1\|WP_043189098.1\|2014262_2015057_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NZ_CP009533.1\|WP_043189071.1\|1999939_2001106_+\|putative-zinc-binding-metallopeptidase	unknown	unknown	gnl\|CDD\|379751
NZ_CP009533.1\|WP_043189063.1\|1992250_1995739_+\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
NZ_CP009533.1\|WP_043189073.1\|2001385_2001868_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NZ_CP009533.1\|WP_043189051.1\|1986651_1987518_-\|xanthine-dehydrogenase-accessory-protein-XdhC	unknown	unknown	gnl\|CDD\|274366
NZ_CP009533.1\|WP_043189054.1\|1987510_1989886_-\|xanthine-dehydrogenase-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|274367
NZ_CP009533.1\|WP_043189096.1\|2012898_2014260_+\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|185312
NZ_CP009533.1\|WP_043189094.1\|2011311_2012757_+\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|273648
NZ_CP009533.1\|WP_043189060.1\|1991588_1992248_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP009533.1\|WP_043189084.1\|2005500_2006535_+\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176190
NZ_CP009533.1\|WP_043189066.1\|1995930_1996854_+\|cell-division-protein-ZipA	unknown	unknown	gnl\|CDD\|234706
NZ_CP009533.1\|WP_043189057.1\|1989878_1991333_-\|xanthine-dehydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|274365
NZ_CP009533.1\|WP_043189068.1\|1997041_1999384_+\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP009533.1\|WP_043189049.1\|1985347_1986655_-\|guanine-deaminase	unknown	unknown	gnl\|CDD\|236419

Protein	Function_ID	Function_description	E-value
NZ_CP009533.1\|WP_043189078.1\|2004723_2005050_+\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	1.37585e-40
NZ_CP009533.1\|WP_043189089.1\|2008388_2008718_-\|YceK/YidQ-family-lipoprotein	gnl\|CDD\|369217	pfam07119, DUF1375, Protein of unknown function (DUF1375). This family consists of several hypothetical, putative lipoproteins of around 80 residues in length. Members of this family seem to be specific to the Class Gammaproteobacteria. The function of this family is unknown.	2.68979e-12
NZ_CP009533.1\|WP_043189091.1\|2010157_2011054_+\|dTDP-4-dehydrorhamnose-reductase	gnl\|CDD\|182184	PRK09987, PRK09987, dTDP-4-dehydrorhamnose reductase; Provisional.	1.10407e-151
NZ_CP009533.1\|WP_043193512.1\|2009090_2010161_+\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|236649	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional.	0
NZ_CP009533.1\|WP_043193511.1\|2007491_2008370_+\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	3.23549e-81
NZ_CP009533.1\|WP_043189087.1\|2006600_2007203_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	2.25002e-114
NZ_CP009533.1\|WP_043189098.1\|2014262_2015057_+\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	1.00841e-46
NZ_CP009533.1\|WP_043189071.1\|1999939_2001106_+\|putative-zinc-binding-metallopeptidase	gnl\|CDD\|379751	pfam15887, Peptidase_Mx, Putative zinc-binding metallo-peptidase. This family has a highly conserved HHExxH motif with a highly conserved ED pairing downstream. HExxH is indicative of a zinc-binding metallo-peptidase.	5.39467e-148
NZ_CP009533.1\|WP_043189063.1\|1992250_1995739_+\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NZ_CP009533.1\|WP_043189073.1\|2001385_2001868_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	1.49106e-08
NZ_CP009533.1\|WP_043189051.1\|1986651_1987518_-\|xanthine-dehydrogenase-accessory-protein-XdhC	gnl\|CDD\|274366	TIGR02964, conserved_hypothetical_protein, xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. [Protein fate, Protein folding and stabilization, Purines, pyrimidines, nucleosides, and nucleotides, Other].	5.47915e-126
NZ_CP009533.1\|WP_043189054.1\|1987510_1989886_-\|xanthine-dehydrogenase-molybdopterin-binding-subunit	gnl\|CDD\|274367	TIGR02965, xanthine_dehydrogenase, xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP009533.1\|WP_043189096.1\|2012898_2014260_+\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|185312	PRK15414, PRK15414, phosphomannomutase.	0
NZ_CP009533.1\|WP_043189094.1\|2011311_2012757_+\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	gnl\|CDD\|273648	TIGR01479, Mannose-1-phosphate_guanylyltransferase, mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_CP009533.1\|WP_043189060.1\|1991588_1992248_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	2.16511e-29
NZ_CP009533.1\|WP_043189084.1\|2005500_2006535_+\|NADP-dependent-oxidoreductase	gnl\|CDD\|176190	cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	0
NZ_CP009533.1\|WP_043189066.1\|1995930_1996854_+\|cell-division-protein-ZipA	gnl\|CDD\|234706	PRK00269, zipA, cell division protein ZipA; Reviewed.	5.80745e-163
NZ_CP009533.1\|WP_043189057.1\|1989878_1991333_-\|xanthine-dehydrogenase-small-subunit	gnl\|CDD\|274365	TIGR02963, Includes:_Xanthine_dehydrogenase, xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP009533.1\|WP_043189068.1\|1997041_1999384_+\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP009533.1\|WP_043189049.1\|1985347_1986655_-\|guanine-deaminase	gnl\|CDD\|236419	PRK09228, PRK09228, guanine deaminase; Provisional.	0

>NZ_CP009533.1|WP_043189073.1|2001385_2001868_-|GNAT-family-N-acetyltransferase
MNVLTPYPYLSPAQLQQLMDIEIRPEQKQYSGDVDMAMYTLLGCMDGEIQGFALLVDEVPKAFLLLKHGRYVPEWAHPGSATLHALQVDWRMQGRGLGRACLEGLPDAARGAWPGVQQLELSVDADNVAGMGLYKALGWVDRGEAYRGRIGYERRFVLVL
>NZ_CP009533.1|WP_043189071.1|1999939_2001106_+|putative-zinc-binding-metallopeptidase
MYRFFEQLSTRITAPFTKPDNRHSKVWECTCGQSIFFRNSQCLACHALLGYWPAKNVLSTLDAGPEAGSWRLHAAPDAGLFRRCANLDTPAACNWLVPAEQGAAALCTACSLNRTIPDLSVPENPEHWRKVETAKRRLIAQLINLGLPVIAKTEDEATGLAFDFIGTDLNGNAPTTGHANGLVTLDIKEADDAHREKVRVQMREPYRTLLGHFRHEVGHYYWDRLIADTHWVADYRRLFGDESQSYADALQRHYDQGAPADWQQNFVSAYATMHPWEDWAETWAHYLHMMDAVDTALGFGMSAKEMDLDYTPFPLTTLYDPDHTSGPAFLAFVNAWIELAGMLNELSRAMGQPDFYPFVLPPAVIAKLHFIHVVVQEAGGRADDVLQV
>NZ_CP009533.1|WP_043189068.1|1997041_1999384_+|NAD-dependent-DNA-ligase-LigA
MTDATRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFRELKALEADHPNLITPDSPTQRVGNAALSAFTQVRHEIPMLSLGNAFEEVDLREFDRRVTEGLDLPTGDLFGSGAAIHYSCEPKLDGLAVSLLYQDGALVRGATRGDGTTGEDISVNVRTIRNVPLKLHGSGWPPVLEVRGEVFMSKAGFERLNASQMEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGIGQVTQDIATTHTGNLEQLKQWGMPISRELKVAENIEQCLEYYHDIGARRTQLPYEIDGVVFKVNSLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVMQVVTERRPENARLVHVPETCPVCGSHVERTQLIKRSKGKQTVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGEKSVEQLVDEGLVSSPADLYTLQFDDVVKLEGFAEVSSNNLLKAIEDSKRPSLARFIYALGIPDVGEETAKVLARSLGSLQRVSEALPQVLTYLPDVGLEVAFEIHSFFEDPHNRTVIQQLLERGLQLQEEGEVHPEYAASTTLAGMIAKLDISSVGPTGAEKLVAKLGSLNAIIAADGIDLRQALNTRQAEAVREYFKQPHHAETARAVEAQLQAFGMHWASEKKAVEGLPLAGQTWVLTGSLEQMSRDEAKQKLEALGAKVSGSVSAKTHTVVAGPGAGSKLAKASELGIKVLDEEQFLKFLASM
>NZ_CP009533.1|WP_043189066.1|1995930_1996854_+|cell-division-protein-ZipA
MEIGLREWLILIGIIVIAGILFDGWRRMRGGKGKLKFRLDRNINNLPEEDTGAEVLGPPRVLDTHKEPQLDEHDLPPMSAQRDGGSQRAKREPTADHADLNLTVEPDEIKEPREARPPKPAREPKPARPQPAMKAARDSHDDFASDGKGFSSSGAPAVEKDLPPVEEVLVISVISRSESGFRGPALLQNILESGLRFGDMDIFHRHESMAGNGEILFSMANAVKPGIFDLDDIDHFSTRAVSFFLGLPGPRHPKQAFDVMVAAARKLAHELDGELKDDQRSVLTAQTIEHYRQRIVEFERRALTHKR
>NZ_CP009533.1|WP_043189063.1|1992250_1995739_+|chromosome-segregation-protein-SMC
MRLKCIRLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGESMTDVIFNGSTSRKPVSQASIELVFDNSDSTLVGEYAAYAEISIRRKVTRESQNTYYLNGTKCRRRDITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEEAAGISKYKERRRETESRIRRTHENLARLTDLREELERQLERLHRQAQSAEKYQQYKAEERQLKAQLSALRWQTLNEQVGQREAVIADQEVAFEALVAEQRNADAGIERLRDGHHELSERFNTVQARFYSVGGDIARVEQNIQHGQQRLRQLQDDFKEAERARLETESHLGHDRTLLATLGEELEMLEPEQAISTEAAEEAAAALEEAETRMHGWQEQWDRFNTRSAEPRRQAEVQQARIAQLELSMQRLAERQRRQSEERELLAADPEDAAILELDEQLASSEMLIEEWTAQEQQQAEQLEATRQQLHEATQAQQQAQGELQRLNGRLASLEALQQAALDPGTGTAQWLDQQGLAQHPRLAEGLRVEPGWEQAVETVLGADLQAVLVDDLAGLDLANFEQGELRLVSATAGGAALADSLLHKVHSEVDLSPWLAGVRAVADLDTALALRNQLAPGESLVSQDGYWLGRHFLRVSRGNDASRGVLARGQELQALHLDVQAHEATLAQVQEQLLTCREQQQAQEQLREQLRRRIQDESRQQGELKARLSASRAKAEQLSLRRRRLDEELGELAEQRALEHEQVGESRLQLQDALDAMASDTEQREQLMAQRDELREGLERIRQDARQHKDRAHQLAVRLGSLRAQHDSTRQALERLQLQAERLTEKREQLTLGLEEGEAPLEELRLSLEGLLEQRMAVDDEMRHARLALDDADRELRDVEKRRTQAEQQSQVLRGQLEQHRLEWQGLSVRRKTLQEQLHADGYDLHGVLATLDVLLNEQQAEEELQRIDGRIQRLGAINLAAIDEYQQQSERKRYLDAQDADLAEALDTLENVIRKIDKETRSRFKDTFDQINAGLQALFPKVFGGGSAYLELTGEDLLDTGVTIMARPPGKKNSTIHLLSGGEKALTALALVFAIFKLNPAPFCMLDEVDAPLDDANVGRYARLVKEMSQTVQFIYITHNKIAMEMADQLMGVTMHEPGCSRLVAVDVEEALAMVEA
>NZ_CP009533.1|WP_043189060.1|1991588_1992248_+|GntR-family-transcriptional-regulator
MTFKAPDSLAEQIAHHLAERIISGELKPAERIQELKVTQALNVSRGSVREALLILERRHLVDILPRRGAQVSELSEHKVRSLCALMGEMYIMLGDAVAQRWKTEADLAPFLIIQGRLQTSFERQDINAFVEDSFNVMRAAYPFANNPYLQETIENLQPAMNRTYYLALEQRKASMSEYLALFGRLLQAVSARDPQLIRKVLGEYCQRSCELVLSALAVR
>NZ_CP009533.1|WP_043189057.1|1989878_1991333_-|xanthine-dehydrogenase-small-subunit
MIQFLLNQTLHTEHALDPNLTVLEYLRTDLARPGTKEGCASGDCGACTVVIGERVEDGGQPHIRYRSSNACLTFVSSLHGKQLLSVEDLKLQGRLHSVQQAMVDCHGSQCGFCTPGFVMSLFALQKNQPQANREQACEALSGNLCRCTGYRPILDAAAQACGGPALPDQFDSQQAQTLARLQAIAPARTDELHGGNNRCLVPLTVADLAELYSEQPEARLLAGGTDLALEVTQAHKVLPVMIYVGHVAEMKRIETFDDRLEIGAAMPLTDCYQALAAEYADFGHLLHRFASLQIRNQATLGGNIGNASPIGDSPPLLLALGAHVVLRKRERSRTLPLQDYFIDYRVTAREDGEFIEKIIVPRADARRVFRAYKVSKRLDDDISAVCAAFSLLIEDGRVHDVRIAYGGMAAIPKRAAGCEAALLDRPWTKATVEAACAALAEDFTPLSDFRASKQYRLLTAQNLLRKCFIELQSPHIQTRVSAHV
>NZ_CP009533.1|WP_043189054.1|1987510_1989886_-|xanthine-dehydrogenase-molybdopterin-binding-subunit
MSEHQAPDSQARMAELFAQGLTTGVGRGVKHDSADKHVTGEAVYIDDRLEFPNQLHVYARLSDRAHARILRIDTSACYDIPGVRLVITHEDIPGLKDIGPLLPGDPLLAIDKVEFVGQPVLAVAARDLDSARRAAMAAVIEYEDLPPVLDVVQALRQQHFVLDSHTHQRGDSAAALASAPHRLQGSLHIGGQEHFYLETQISSVMPTEDGGMIVYCSTQNPTEVQKLVAEVLDVSMSQVVVDMRRMGGGFGGKETQAASPACLCAVVAHLTGQPTKMRLPRVEDMLMTGKRHPFYIEYDVGFDDNGRLHGIDLDLAGNCGYSPDLSASIVDRAMFHADNAYYLGDATINGHRCKTHTASNTAYRGFGGPQGMVAIEEVMDRIARHLALDPLAVRKANYYGKTERNVTHYHQTVEHNLLEEITAELEASCDYEQRREAIRAFNADSPVLKKGLALTPVKFGISFTASFLNQAGALIHIYTDGSIHLNHGGTEMGQGLNVKVAQVVAEVFQVDIARIQITATNTDKVPNTSPTAASSGADLNGKAAQNAALILKQRLVEFAARHYRVSEEDVEFSNGHVRVRDQLLTFQSLVQQAWMGQVSLSSTGYYKTPKIHYDRSLARGRPFYYFAYGAACCEVLIDTLTGEYKLLRTDILHDVGASLNPAIDLGQVEGGFLQGVGWLTCEELVWSDQGKLLTSGPASYKIPAVADMPQDLRVQLVENRKNPEDTVFHSKAVGEPPFMLGIAAWCAIKDAVASLGDYRLQPNIDAPATPERVLWGCEQMRQAAPGSVRHD
>NZ_CP009533.1|WP_043189051.1|1986651_1987518_-|xanthine-dehydrogenase-accessory-protein-XdhC
MTDWIGALAEQQARGEACVLVTIIEEKGSTPRNAGAKMVVSDTALFDTIGGGHLEYKALHIAREMLAEGTRATRLERFSLGASLGQCCGGATVLLFEPVAQTQAQVVVFGAGHVGRALVPLLASLPCRVRWVDSRPEEFPASLPDGVCQVITDEPVDEVASLPVGSYCIVMTHDHSLDLELTRAILERNDFTWFGLIGSATKRARFEHRLRDRGIAPSVVQRMRCPMGLEAVKGKLPMEIAVSIAAEIIATYNAHFGARAEPGTASSPGVAQLLPRSRRSPAALRDAP
>NZ_CP009533.1|WP_043189049.1|1985347_1986655_-|guanine-deaminase
MSLTCKAYRAAILHSLDDPALVGVQASYEYFADGVLVVEDGRISALGAASEVLPTLSDDVEVTHYPDALITPGFIDTHIHFPQTGMVGSYGEQLLDWLNEYTFPCEGQFADKAHADGVAQIFLKELLRNGTTTALVFGSVHPESVDALFEAAQALDLRLIAGKVMMDRNAPDYLTDTAQSSYAQSKALIERWHGKGRLHYAVTPRFAPTSSEAQLTLAGQLLREYPDVYLQTHLSENLQEIEWVKALFPERGNYLDVYDHYQLLGERSVFAHGVHLCDAECERLAETGSAIAFCPTSNLFLGSGLFNLPQAERFKVNVGLGTDVGAGTSFSLLHTLNEAYKVMQLQGEKLNPFKSLYLATLGGARALRLEDRVGTLQPGTDADFVVLDYHATPLLSYRIAQAKTFEEVLFVLMTLGDDRAVLQTYAAGRRVHSRD
>NZ_CP009533.1|WP_043189078.1|2004723_2005050_+|YbaB/EbfC-family-nucleoid-associated-protein
MMKGGMAGLMKQAQQMQEKMAQMQEELAKAEVTGQSGAGLVSVVMTGRHDVKRVSLDDSLMQEDKDVLEDLIAAAVNDAVRKIEANSQDKMSGMTSGMQLPPGFKMPF
>NZ_CP009533.1|WP_043189084.1|2005500_2006535_+|NADP-dependent-oxidoreductase
MSQDLTLNQRFVLASRPTGAPTPENFRLEREALPDLEDGQVLLRTLYLSLDPYMRGRMSDAPSYAAPVEIDEVMTGGTVSRVETSKHPKFREGDLVVGMTGWQTHCISDGSNLTPLPAGIPSPSMALGVLGMPGMTAYMGLTHIGQPKEGETLVVAAASGAVGSVVGQVGKIKGLKVVGIAGGPDKCRYVVEELGFDACVDHKSDTFAEDLAKACDQGIDIYFENVGGKVFDAVMPLLNARARIPVCGLIAGYNATDLPEGPDRFALLPRTLLTKRIRMQGFIVFDDFGDRHAEFFSAMVPWVRDGKIKFREDVVEGLERAPEAFIGLLQGHNFGKLVVKVSEV
>NZ_CP009533.1|WP_043189087.1|2006600_2007203_+|recombination-protein-RecR
MSFSPLIRQLIDSLRTLPGVGQKSAQRMALQLLERDRSGGSRLAQALSQAMEGVGHCRQCRTLTEEELCPQCADPRRDDTLLCVVEGPMDVYAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPQLMARIDEQGTFAEVILATNPTVEGEATAHYIAQLLAKKGLIASRIAHGVPLGGELELVDGGTLAHSFAGRRPITL
>NZ_CP009533.1|WP_043193511.1|2007491_2008370_+|PhzF-family-phenazine-biosynthesis-protein
MHRLAFKQVDVFTHQRFKGNPLAVILKAESLTREQMQQIAHWNNLSETTFVLPATRPEADYRVRIFTPSSELPFAGHATIGSAHALMEAGLIEPRNGRLVQECPVGLINVDVTSQPDGSRLITFELPPATIQPVNDSDYRELQAVLGVSVVRDRRPCFVTVGPRWLVVQLRDAQTVLAVIPDLARMAINDHRTSTTGVVIFGPHPEGSNEHIEVRTFAPTCGIVEDAACGSGGGAVAAFIRATGQTASFGSQIRIAQGAALGRAGKLHLSISDESIKVSGACVTCLDGFLKP
>NZ_CP009533.1|WP_043189089.1|2008388_2008718_-|YceK/YidQ-family-lipoprotein
MKAVVGVLLAGLLAGCGTINTVFRDDVVTSDNLKEAESFCAAVPRVYSGVVYDFCLLHGKEARPGQTRDGAQLGFVAVDMAVSAVFDTLMLPYTLYRQHTDGGIEVVGR
>NZ_CP009533.1|WP_043193512.1|2009090_2010161_+|dTDP-glucose-4,6-dehydratase
MKILVTGGAGFIGSAVIRHILANTDDAVVNVDKLTYAGNLDSLMGSERTPRYAFEHVDICDRAQMDRVFAEHRPDRVMHLAAESHVDRSITGPAAFVETNVIGTYTLLEASRQYWSQLDAEKQAAFRFHHISTDEVYGDLEGPEDLFTETTPYQPSSPYSASKASSDHLVRAWQRTYGLPTLITNCSNNYGPCHFPEKLIPLIILNALEGKALPIYGKGNQIRDWLYVEDHARALYRVVTEGEVGETYNIGGHNEKQNIEVVHTVCALLDELCPQSPHRPHAQLITHVQDRPGHDVRYAIDASKIQRELGWTPVETFESGIRKTVQWYLDNPEWVNRVKSGAYQQWIDTNYQGREL
>NZ_CP009533.1|WP_043189091.1|2010157_2011054_+|dTDP-4-dehydrorhamnose-reductase
MKILLLGKNGQVGWELQRALAPLGNVVALGRNIDEAGLCGDLAALEGLADTVRRIAPDVIVNAAAYTAVDKAETEKDTADLINHRASGMLAREALELDAWLVHYSTDYVFDGTGDKPWLETDTTVPVNYYGASKLAGEEAIRQSGCKHLIFRTSWVYAARGNNFAKTMLRLAKDRKSLSVISDQIGAPTGAELLADVVAHAIPMAVASPDLAGTYHLAATGETSWHAFAKLVIENARRQGTKLAVEAVEAIPTSAYPTPARRPLNSRLDTTKLTERFGLTLPHWEVGVKRMLAEISTK
>NZ_CP009533.1|WP_043189094.1|2011311_2012757_+|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase
MNLIPVILSGGVGSRLWPVSREAHPKPFMALPDGQNLIQKTFLRAAKLEGVSEVLTVTNRELLFKTEDEYRTVNKTGHAQGFILEPFGRNTAAAVAMAALQLNDSHGPDAHMLVLAADHLIQNEAAFAAAVAKAVKLSADGWLVTFGIQPQYPETGFGYIEAGVGTGLDGTLKVARFVEKPDLETAKGYVAAGNYFWNSGMFCFKVGSVLEELKKHAPDVLAAAAAVKDASRLTEAPNYRCLALDADAFAQVPDISVDYALMERSDKVATVPCDIGWSDIGSWNAVSELTEADAQGNRFEGEVLSHNARNNFVHSEDRLTALVGVDDLLVIDTPDALMISHKDHCQDVKHIVGQLKASGHHLHKLHRTVHRPWGTYTTLEEGERFKIKRIVVKPQASLSLQMHHHRSEHWIVVSGMAVVVNDDRELMLNTNESTFIRAGHQHRLKNPGVIDLVLIEVQSGDYLGEDDIVRFEDVYGRVDKA
>NZ_CP009533.1|WP_043189096.1|2012898_2014260_+|phosphomannomutase/phosphoglucomutase
MYPPLQTRCFKAYDIRGQVPADLNDDIAYRIGRALVSELHGKAYVVGRDMRLESPSLAAALIKGLTEAGADVLDLGLCGTEEVYFATSHLKADGGIMITASHNPKGYNGMKLVREHSKPISGDTGLDAIRARVEAGNFDEKAATAGHVREVFDKSAYIEHLLTYIDVNSLKPLKVLADPGNGAVGPTIELLKAKLPLELIVINGEPDGNFPNGVPNPLLPENRELTRKALLENGADMGIAWDGDFDRCFFFDDKGRFIEGYYLVGLLAEMLLKKHPGSKIIHDPRLTWNTIEQVEAAGGVAIQSKTGHAFIKERMRAEDAVYGGEMSAHHYFRDFAYCDSGNIPWLLVAELMSVTGKTLAQLVDERIEAFPCSGEINYEVADVKGSIEKILAFYTAENPSVDRTDGISVEFADWRFSLRGSNTEPLLRLNVESRGSEELVAQRVAEIERLIKG
>NZ_CP009533.1|WP_043189098.1|2014262_2015057_+|ABC-transporter-permease
MFGMLRGIWDYRGFIATSIKNEFVARFARSKLGGLWMIIHPLAQVAIYALILSNVLGARLPGIDNKYAYALYLIAGILAWNLFAEIVGRCLTVFIEQGNLMKKMRFPRIALPIIVVGSALLNNLLLFAAVLIIFAALGHAPNMQMFWLLPLTLTIVALAVGIGLVLGVLNVFIRDIGQVMPIVLQVWFWFTPIVYSINIVPDYLRGTLDSNPMYPIVAAYHNVLVYKVPPDLAQIGVVVLIAVGLMLLGLFLFRRASAEMVDSL

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Crispr_ID: NZ_CP009533_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009533_8

2176369-2176520

Orphan

Consensus_repeat	Method
GATCAGCGTGCATCCGTAGGAGCGGTCATCGGCCGCGAAGGGCATGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009533_8

>merge|NZ_CP009533|8|2176369-2176520|CRISPRCasFinder
GATCAGCGTGCATCCGTAGGAGCGGTCATCGGCCGCGAAGGGCATGGCACGATGTGTCTGATCGACCGAGGGGGCTTTTTCGCGGCCACGGACCGCTCCTACATGATCAGCGTGCATCCGTGGGAGCGGTCATCGGCCGCGAAGGGCATGGC

>NZ_CP009533|8|8|2176369-2176520|CRISPRCasFinder
GATCAGCGTGCATCCGTAGGAGCGGTCATCGGCCGCGAAGGGCATGGC	ACGATGTGTCTGATCGACCGAGGGGGCTTTTTCGCGGCCACGGACCGCTCCTACAT
GATCAGCGTGCATCCGTGGGAGCGGTCATCGGCCGCGAAGGGCATGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009533.1\|WP_043189390.1\|2181104_2181506_+\|hydroxyisourate-hydrolase	unknown	unknown	gnl\|CDD\|274364
NZ_CP009533.1\|WP_052393373.1\|2178396_2179821_-\|heavy-metal-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|273593
NZ_CP009533.1\|WP_043189374.1\|2173336_2175148_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP009533.1\|WP_043189385.1\|2177771_2178302_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|153102
NZ_CP009533.1\|WP_043189388.1\|2179813_2180488_-\|heavy-metal-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|130454
NZ_CP009533.1\|WP_043189343.1\|2164327_2165392_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP009533.1\|WP_043189397.1\|2185215_2186349_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|376844
NZ_CP009533.1\|WP_043189361.1\|2169641_2170361_+\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224104
NZ_CP009533.1\|WP_043189371.1\|2172144_2173218_-\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|224208
NZ_CP009533.1\|WP_043189358.1\|2167861_2169235_-\|LOG-family-protein	unknown	unknown	gnl\|CDD\|378752
NZ_CP009533.1\|WP_043189352.1\|2166733_2167492_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|119339
NZ_CP009533.1\|WP_052393374.1\|2180622_2181090_+\|heme-binding-protein	unknown	unknown	gnl\|CDD\|377163
NZ_CP009533.1\|WP_043189377.1\|2175405_2176314_+\|glutaminase-B	unknown	unknown	gnl\|CDD\|234880
NZ_CP009533.1\|WP_043189381.1\|2176624_2177230_+\|SCO-family-protein	unknown	unknown	gnl\|CDD\|239266
NZ_CP009533.1\|WP_052393372.1\|2177229_2177724_+\|copper-chaperone-PCu(A)C	unknown	unknown	gnl\|CDD\|377298
NZ_CP009533.1\|WP_043189364.1\|2170370_2171501_-\|lactonase-family-protein	unknown	unknown	gnl\|CDD\|378416
NZ_CP009533.1\|WP_043189347.1\|2165404_2166469_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270307
NZ_CP009533.1\|WP_043189368.1\|2171721_2172027_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009533.1\|WP_043189393.1\|2181680_2182649_+\|XdhC-family-protein	unknown	unknown	gnl\|CDD\|224886
NZ_CP009533.1\|WP_052393375.1\|2182643_2184911_-\|copper-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783

Protein	Function_ID	Function_description	E-value
NZ_CP009533.1\|WP_043189390.1\|2181104_2181506_+\|hydroxyisourate-hydrolase	gnl\|CDD\|274364	TIGR02962, Probable_5-hydroxyisourate_hydrolase_R09H10.3, hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	7.45849e-60
NZ_CP009533.1\|WP_052393373.1\|2178396_2179821_-\|heavy-metal-sensor-histidine-kinase	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	2.16953e-111
NZ_CP009533.1\|WP_052393374.1\|2180622_2181090_+\|heme-binding-protein	gnl\|CDD\|377163	pfam03928, Haem_degrading, Haem-degrading. Haem_bdg is a bacterial protein that is up-regulated in response to haemin- and peroxide-based oxidative stress. It interacts with the SenS/SenR two-component signal transduction system. Iron binds to surface-exposed lysine residues of an octomeric assembly of the protein.	8.03293e-29
NZ_CP009533.1\|WP_043189385.1\|2177771_2178302_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|153102	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) display an N-terminal extension of variable length that contains two or three positively charged lysine residues that extends into the solvent and is thought to play an important role in the stabilization of the complex with DNA. DPS Listeria Flp, Bacillus anthracis Dlp-1 and Dlp-2, and Helicobacter pylori HP-NAP which lack the N-terminal extension, do not bind DNA. DPS proteins from Helicobacter pylori, Treponema pallidum, and Borrelia burgdorferi are highly immunogenic.	1.7435e-42
NZ_CP009533.1\|WP_043189388.1\|2179813_2180488_-\|heavy-metal-response-regulator-transcription-factor	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	6.4807e-110
NZ_CP009533.1\|WP_043189343.1\|2164327_2165392_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	8.97082e-154
NZ_CP009533.1\|WP_043189397.1\|2185215_2186349_+\|glycerate-kinase	gnl\|CDD\|376844	pfam02595, Gly_kinase, Glycerate kinase family. This is family of Glycerate kinases.	0
NZ_CP009533.1\|WP_043189361.1\|2169641_2170361_+\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|224104	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].	7.76416e-37
NZ_CP009533.1\|WP_043189371.1\|2172144_2173218_-\|FUSC-family-protein	gnl\|CDD\|224208	COG1289, COG1289, Predicted membrane protein [Function unknown].	1.65955e-23
NZ_CP009533.1\|WP_043189358.1\|2167861_2169235_-\|LOG-family-protein	gnl\|CDD\|378752	pfam11892, DUF3412, Domain of unknown function (DUF3412). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain is found associated with pfam03641.	4.17829e-80
NZ_CP009533.1\|WP_043189352.1\|2166733_2167492_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|119339	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.	1.61075e-57
NZ_CP009533.1\|WP_043189377.1\|2175405_2176314_+\|glutaminase-B	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	0
NZ_CP009533.1\|WP_043189381.1\|2176624_2177230_+\|SCO-family-protein	gnl\|CDD\|239266	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II.	2.91642e-51
NZ_CP009533.1\|WP_052393372.1\|2177229_2177724_+\|copper-chaperone-PCu(A)C	gnl\|CDD\|377298	pfam04314, PCuAC, Copper chaperone PCu(A)C. PCu(A)C is a periplasmic copper chaperone. Its role may be to capture and transfer copper to two other copper chaperones, PrrC and Cox11, which in turn deliver Cu(I) to cytochrome c oxidase.	2.2601e-36
NZ_CP009533.1\|WP_043189364.1\|2170370_2171501_-\|lactonase-family-protein	gnl\|CDD\|378416	pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller. This entry contains bacterial 6-phosphogluconolactonases (6PGL)YbhE-type (EC:3.1.1.31) which hydrolyze 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonising enzyme carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and muconate cycloisomerase (EC:5.5.1.1), which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold.	6.48672e-84
NZ_CP009533.1\|WP_043189347.1\|2165404_2166469_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270307	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic binding domain that serves as the primary high-affinity receptor of an uncharacterized ABC-type polyamine transporter from Rhodopseudomonas palustris Cga009 and related proteins from other bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.87933e-96
NZ_CP009533.1\|WP_043189374.1\|2173336_2175148_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	5.4125e-97
NZ_CP009533.1\|WP_043189393.1\|2181680_2182649_+\|XdhC-family-protein	gnl\|CDD\|224886	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones].	1.96232e-54
NZ_CP009533.1\|WP_052393375.1\|2182643_2184911_-\|copper-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0

>NZ_CP009533.1|WP_043189377.1|2175405_2176314_+|glutaminase-B
MQALLVEILDAVRPLIGQGKVADYIPALADVPPAQLGIAVYGNDGEVFSAGDAHTPFSIQSISKVFSLVQAIGHSGEDIWQRLGHEPSGQPFNSLVQLEFERGRPRNPFINAGALVICDINQSRFAAPALSMRDLARRLSGNPQVIVDGRVAESEYQHRARNAAMAYLMKSFDNFHNDVEAVLRSYFSHCALRMDCVDLARAFCFLANDGYCKHSGEQVLTRRQTQQVNSIMATSGLYDEAGNFAYRVGLPGKSGVGGGIVAVVPGQFTVCVWSPELNPAGNSLAGMAALELLSERIGWSVF
>NZ_CP009533.1|WP_043189374.1|2173336_2175148_+|ABC-transporter-ATP-binding-protein
MPAFSRLKTFLGQARRALQLVWATSPGLLLGLVLATLAAGILPALAALLGQRIVDAVVAAMQLHQQTGAAPLWPVLRYVLMEAGVLALLAGAQRGLSVQQALLRVQLGQKVNTLILEKAQTLSLMQFEDSEFYDKLVRVRREASTRPLALVSKSLGLVQNLISLVSFGVLLVHFSPWALAILVVGALPVFFAEAHFSGDAFRLFSRRAPETRRQNYIETLLSHEGYIKEVKLFGFAPLLLQRYRDTFTKLYAEDRRLTLRRDGWGFVLGLLGTTAFYLAYGWIVIDTVNGHITLGQMTMYLVLFKQGQSAVSSSLTAIGGLYEDGLYLADLYDYLAYPVQVAQGDITEGVRPGDGLRCEGLGFRYPGANRATLQGIDLHLVPGKSLALVGENGSGKTTLIKLLTRLYRPDEGRILLDGSDLQDWQEEALRQRIGVIFQDFIRYQFSVGENLGVGDTRAFDDTQRWREAAVQGTAEPFIERLENGYATQLGRWFAGGQELSGGQWQKLALSRAYMRRDADILILDEPTAALDASAEAAVFEHFREYAKGRMTLLISHRFSSVRNADHIVVLEQGRVLERGNHEQLMAQAGRYAELFEVQARGYR
>NZ_CP009533.1|WP_043189371.1|2172144_2173218_-|FUSC-family-protein
MNAFKSIALPVWLRRVLRPLLDPYRRYRHARLIHAARIVAALLVSILLTSGFNLPHGEWASVTLLIVIGGLQHHGNIGKKSIERAYGTLIGAALGLAVVAQQNYFEMPVVTYLLMSVACGFFAYHAIGKGGYTALLSAITLFIVAGHGDNPITDGLWRTVDILIGIALALAFSFALPLYAVYSWRYNLATGLRGCATIHSRIVSGQPVSADEHLKLMAKLNANMVQLRSLLPSVSKEVKISMTELDAIQGHFRMCLSTLEILANLRPSGSDRNAMAQLQQCLNGENRHIRRQLVGMARALRDGATERLERNYASADSDAPNVVPGELIGYRLLTLQLVNNLDGLQQRLAKTAGRWKI
>NZ_CP009533.1|WP_043189368.1|2171721_2172027_-|hypothetical-protein
MNIDKLSSHVNNGEISEVNLVSMEGGSYVLHAILEGVSQPVASANGATIHVASVEEARKVLAGVADIKLFLVQGNAHDEMIGNPEEGNHTMREEIPLRSSL
>NZ_CP009533.1|WP_043189364.1|2170370_2171501_-|lactonase-family-protein
MRKHLLLAAAIGCAGGVAQANTFAYISSPDDGMISQYRLDEATGALTLLHQTSAGDKVNPMALSPDHTTLYAALRVEPFRVMAYRIDPATGQLAPTAEAPLAASLAYLSTDRSGRYLMGASYGGNVLTVQAIDAQHRPAKDSKVYTTGPYAHSVRSDPSNHFVYATTLGDEKVLQFSFNQQNGALEPIGPGHALVTAGSGPRHIAFAPGGKFLYVVGELSGTVDSFSIDPQTGALTKVAHAEGVPKSLNLAHGEIRNAANNDLKDDPTPRIWAADVRVSPDGQLIYITERTTSSVSAFKADPASGTLSFQGNYPLQEKQPRNIAFSPSGRWLLVTGEKADKVGSYAVGAQGALTRTGEAPSGKGALWIEMLSLPGA
>NZ_CP009533.1|WP_043189361.1|2169641_2170361_+|CDP-alcohol-phosphatidyltransferase-family-protein
MILIRPSATLKAWGAHGFTATGVVLAFLATLALFDGQPKICLLWLGLALVVDGVDGSLARKLNTQSVLPHFDGSTLDLVIDYLTYVFIPALFIYRYIPLPEFTMLITVSIILVSSLFCFCNVNMKSKDNYFVGFPAAWNVVALCMYIISPSPWVALLAVIGLALLTVTKMKFLHPFRVRRFMAINIAVTSIWLLCTFVLILNHPASNPVAMGLWSLMSAYFLGICVWRTVVEWLGRLRA
>NZ_CP009533.1|WP_043189358.1|2167861_2169235_-|LOG-family-protein
MAPRNVINASVSPKGSLETLSQREVQQLSAAGSGSTYTLFRQCALAILNTGAHVDNAKTILDAYQDFEVRIHQQDRGVRLELLNAPADAFVDGEMIASTREMLFSALRDIVYTESELDSQRIDLSDSQGITDYVFHLLRNARTLRAGLEPKMVVCWGGHSINSDEYKYTKKVGHELGLRKLDICTGCGPGVMKGPMKGATIAHAKQRMSGGRYLGLTEPGIIAAEAPNPIVNELVILPDIEKRLEAFVRVGHGIIIFPGGAGTAEEFLYLLGILMHPDNHGLPFPVILTGPKSAEAYLQQLDHFVVATLGEAAREHYQIIIDNPAEVAREMTESLKKVKLFRRERNDAFHFNWLLKIEESFQRPFDPTHANMANLELSRALPPHQLAANLRRAFSGIVAGNVKDKGIRLIEEHGPYQIRGDAAVMEPLDKLLQAFVEQNRMKLPGGAAYVPCYRVVT
>NZ_CP009533.1|WP_043189352.1|2166733_2167492_-|enoyl-CoA-hydratase/isomerase-family-protein
MSDIVLEIKGPVAVITLNRPAVLNAWTTPMRNEIIEALNGYNTDPAIKAVIMTGAGDRAFSAGQDLSEAHDFDGDRAVEWVGEWERYYATLRGLSKPLIIALNGTAAGSAFQVALLGDIRVGHPGVRMGQPEINSGIPSTTGPWIMNSMLGMSRTIELTLTGRLMNADECKQIGLIHHLVPADQVMSKALEIAEELAAKPPIAMRLDKQRFREMSEPGFKDCIAAGRRLQKEAYDSGEPARMMEAFFKARAK
>NZ_CP009533.1|WP_043189347.1|2165404_2166469_-|ABC-transporter-substrate-binding-protein
MHTPSNPGRRRLLKAGATVALVCGLPNVVRAADRQIIVSDPGGPYTEAYRKAFYDPFEKATGIKIVSVARESQPVAQFSAMVKTRNYVWDVTTLTISADIPYLQAQGFLEPIGLSASDYPDLLPEAITPNFLGVDVYSTVLAYRTDTFKDGKGPQSWADFWNVEKFPGRRCLRRSPLDTLEQALLADGVGLDELYPMDVDRAFKSLDKIKPHIDLWWTSGAQAMQAIQSGEVDMISAWNGRAQAAIDNGAPVQIVWNQGLYSIEGWAIPKGTPHADMAKEFVRFCADAKRQADFTDTLAYGPTNRRSFEFIAPERAALLPTAPQNLENMRLPSPAWWAENRTTVTERFNAWILS
>NZ_CP009533.1|WP_043189343.1|2164327_2165392_-|ABC-transporter-ATP-binding-protein
MSVKLETRGLGKTYGQFVALQPTDIQVREGEFLTLLGPSGSGKTTLLQMISGLVPPDSGQLLIDGQEATHIAPGKRGIGLVFQSYALFPHMSVRDNVAYGLRMRKYPKAEVSQAVDDALAMVRMEDFAHRYPNELSGGQQQRIALARCFAYRPSIILLDEPLGALDKNLREHMQLEIRRMHKELGATFIYVTHDQEEALTLSDRICLMNRARIEQLATPEELYDRPATRFAAEFIGHSNLLQGQRDGTGHLQVEGQRLDLSGCAGHQAPSAGTEAFLLIRPEAARLTDPAAGLLQGTVDECVFLGSDTRALVRLPSGNRFSVRCSRDLSPRVGDPVGIAWEPTRATLLPAQAAS
>NZ_CP009533.1|WP_043189381.1|2176624_2177230_+|SCO-family-protein
MNDFPTRRRVLAGMGILGLGALAGCGDSNKLSFKHGKDLSNEILGRTFRLKDPQGNEKTLSSFRGMMPMVFFGFTQCPAVCPTTLARAVQAKKLMGRDGDRLQVIFITLDPERDTPEVLDAYVKLFDPTFVALRGTLEQTAEVAKEFKVFFEKVPVGDTYTISHTSTSYVFDSRGVLRLGLSHSLTAQECAEDLLTVMEVC
>NZ_CP009533.1|WP_052393372.1|2177229_2177724_+|copper-chaperone-PCu(A)C
MKFVVKKLSVTTLNTVRHATLLIAALGFTGHAMAQTTVEDAWARATVPGQPATGAFMTLKADADSTLISVQSPAAKDTQIHQSTMKGDVMSMLPVDEVSLPAGEPVVFDANGYHVMLIGLVKQVKEGDAVPLTLKIKNAQGEEETLEVNAVARALNAPGHAHAH
>NZ_CP009533.1|WP_043189385.1|2177771_2178302_-|DNA-starvation/stationary-phase-protection-protein
MAVANVKQELKTVSSVKAKAEKGEGARLQNQAEVGQELAVLLSDVFALYFKTKNYHWHMKGSHFRDYHLLLEEQATQIYAITDLIAERARKIGEPTVRSMEQMVQLKRLASSEAADLSPEDMLTELHDDNQSLAAYMRTTHGVTDEANDLSTTSLLEEWIDQAEERAWFLGQTVGK
>NZ_CP009533.1|WP_052393373.1|2178396_2179821_-|heavy-metal-sensor-histidine-kinase
MSERRHSLAWRLALAVAVVCTLVMSTVAVFLYRSLAAEIAYRDDLALLGRLEQIRTLLHDSDSLGALQQRPQLYQNMLGNQESVLRVRRADGSLVFEINPHGDELGDPLRIGLGQHPRRSDIRLDSGASLLAGDAVGPAGEALTVMVGKRLHEREAILASYRLRLYLAVAAGALLAWIIGLLLVRRALTPLRDMADALALIDLRNLHRRLADTAAPLELQAPIQALNGMLARLEQGFERLSQFSADLAHEIRTPLHTLLASTGQALNQPRSSDEYRELLGSNIEEYERLNRMVENLLFLARADHGQRPVHPQAIDLAHLGEELCDYFQLLADERGACLEHSLHGTLNTDLQLLQRALGNLLANAVRHARPGTTVRLSQHDDAAFVRLCVRNEGDTIAPEHLPKLFDRFFRIDPARTEPGDSGGLGLAIVQSIMTLVNGKVSASSGNGVTTFTLSFPNAGTLQLDFNPDSDPSSV
>NZ_CP009533.1|WP_043189388.1|2179813_2180488_-|heavy-metal-response-regulator-transcription-factor
MRVLLVEDEAKTANFLAKGLGESGFAVDVALNGLDGRYLIEQQAYDLVILDVMLPGLNGWQLLKLIRQRGATPVLFLTAKDAIEDRVRGLELGADDYLVKPFAFAELLARVRTLLRRGAVREVEHYQVADLEVDVLRRRVSRGGQRISLTNKEFALLHMLISRPGEALSRTLIASQVWNLNFDSDTNMVEVAIRRLRAKVDDPFMPKLIHTVRGVGYQLEHQDE
>NZ_CP009533.1|WP_052393374.1|2180622_2181090_+|heme-binding-protein
MKALCMTFTLACLMATQAHAALAQHPDLDLATAQRLANGSGCVAAVAVLDRGGNILVQQRGDGVGPHNTEAARLKAYTALSTKTPTRLFAERARNNPEAANLSSLGQLLLLGGGVPVYEGKQLVGAIGIAGAGGAEQDEACAIKATESVGLATHP
>NZ_CP009533.1|WP_043189390.1|2181104_2181506_+|hydroxyisourate-hydrolase
MLKKTLLAATLASLSSLAMAANPLSVHVLNLETGVPSAGIEVTLEQHSGNQWQPLGQGVTNEQGRIAGLYPEQRQFAPGEYRVVFKTGDYYHKVGHETFFPEIPVIFEVKNTEQHYHIPLLLSPYGFSTYRGS
>NZ_CP009533.1|WP_043189393.1|2181680_2182649_+|XdhC-family-protein
MKQLDLQVIQQAQAWLGQGRGVWLCTVLSTFGSAPRGPGAMLVALDNGEHCGSLSGGCVEDDFLERVAAGYFTPINQVVRYGDGGLAPTMALPCGGVLDVLVEHLAPDDATRQHLAQIEQAFAGGELVARQVIPGTTQRSIRAGHMGDARVAVSDQEISIRIGAVQRLILAGLSPVAEFCAGFALSLGYEVILCEPRPEVLARLDLPGVQVHEVLPAVFIAEGGCHSATAVVALTHDPRLDDLTLLEAVRTPAFYIGAMGSMRTSEKRFERLQRIGGLDADAQQRIHAPIGLNLGSKTPAEIALAVMADILRVANGIDRQRL
>NZ_CP009533.1|WP_052393375.1|2182643_2184911_-|copper-translocating-P-type-ATPase
MAANKGAIELGIQGMTCASCVGRVERTLGKVPGVTTVAVNLATERGRVEGDESLDVQALIAAIDKAGYTATPIEHTQDELDRSSRAHAADAARLHCDLRWSVLLSLPVVILEMGAHLIPGFHAWIDQHFAQQGNWLLQFALTTLVLITCAKRFYGKGIQALLRGAPDMNSLVAVGTLAAYGFSVVSTFAAHLLPSATATVYYEAVCVIICLILLGRTLENRARGRTSQAIKRLLNLQPQTAWVQRQVGLMEVPLAQLVQGDVVQVRPGERIAVDGTVLAGDSFVDESMLTGEPMPVRKQAGDRVVGGTLNQNGTLQVRATELGSASLLARIVAMVEQAQGSKLPIQALVDQVTLWFVPVIMLLALLTFAGWYWLGPQPALGMALVHAVAVLIIACPCAMGLATPTSIMVGTGRGAELGILLRKGEALQQLKGARVVALDKTGTLTEGQPRLTDLQLAPGFTRERLLPLLAAVEALSEHPLARAIVVAAQEEQLTWPQAQDFQAHTGYGVSATVDGQSIAIGADRYMAQLGVDTAPFASAAHSLAEHGKTPLYAAVNGQLAAVIAVADTLKPSTQAAIQTLHALGLKVAMISGDDSRTAQAIAAQLGIDQVVAEVLPEGKVAAVQALQREYGVTVFVGDGINDAPALAQADVGIAVGSGTDIAIEAADVVLMSDNLGSVATAIALSTATLNNIRQNLFWAFVYNAALIPVAAGVLYPIYGLTLSPQFAAGAMALSSVFVLVNALRLKGFQPPAAHS
>NZ_CP009533.1|WP_043189397.1|2185215_2186349_+|glycerate-kinase
MKIVIAPDSFKDSLSAADVAAAIARGLRQALPEAALVERPMADGGEGTMQAIMAACKGELRTVTVDGPLGDPTRAQWGWLAAERTAIIEMAEASGLQLLERQHRDACNSSTYGTGQLIAAAMDAGARRIILAIGGSATNDAGTGMLRALGLRLTDAQAADLARGGLALSHLTTLDISGLDRRLAEVQFEVAADVDNPLCGPHGASHIFGPQKGATAEQVLALDTALGHFADHCVPVLGHDHRDLPGCGAAGGMGFAAKAFLNASFRPGVEVVAQLVGLAEAVIGADLVITGEGRFDAQTLRGKTPFGVARIARDADVPVVVLAGTLGEGYQDLYAHGIDAAFSLACGPMTLEQACADASALLSDRARDIALLWQLRR

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Crispr_ID: NZ_CP009533_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009533_9

3417476-3417633

Orphan

Consensus_repeat	Method
AATCGGGGCCAACCGTGGGAGCGGTCATCGGCCGCGAAGAATGCGCCGCGGTTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009533_9

>merge|NZ_CP009533|9|3417476-3417633|CRISPRCasFinder
AATCGGGGCCAACCGTGGGAGCGGTCATCGGCCGCGAAGAATGCGCCGCGGTTTGCCTGATACACCGCGGCGCTATTTTCGCGGTCACGGACCGCCCCACAGGAATCGGGGCCAACCGTGGGAGCGGTCATCGGCCGCGAAGAATGCGCTGCGGTTTG

>NZ_CP009533|9|9|3417476-3417633|CRISPRCasFinder
AATCGGGGCCAACCGTGGGAGCGGTCATCGGCCGCGAAGAATGCGCCGCGGTTTG	CCTGATACACCGCGGCGCTATTTTCGCGGTCACGGACCGCCCCACAGG
AATCGGGGCCAACCGTGGGAGCGGTCATCGGCCGCGAAGAATGCGCTGCGGTTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009533.1\|WP_043191736.1\|3408037_3409060_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NZ_CP009533.1\|WP_043191751.1\|3418464_3418956_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
NZ_CP009533.1\|WP_043191743.1\|3412293_3413091_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NZ_CP009533.1\|WP_043191761.1\|3423090_3424518_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143456
NZ_CP009533.1\|WP_043191747.1\|3414825_3415914_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP009533.1\|WP_043191739.1\|3410217_3411270_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270307
NZ_CP009533.1\|WP_043191760.1\|3421946_3422894_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|188320
NZ_CP009533.1\|WP_043191767.1\|3427661_3428579_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176168
NZ_CP009533.1\|WP_043191764.1\|3424636_3426310_-\|GMC-family-oxidoreductase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|273814
NZ_CP009533.1\|WP_043191756.1\|3419772_3421056_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP009533.1\|WP_043191759.1\|3421102_3421807_-\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|319787
NZ_CP009533.1\|WP_043191735.1\|3407735_3408026_+\|HigA-family-addiction-module-antidote-protein	unknown	unknown	gnl\|CDD\|274228
NZ_CP009533.1\|WP_043191765.1\|3426323_3427361_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270307
NZ_CP009533.1\|WP_043191749.1\|3417739_3418426_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009533.1\|WP_043191753.1\|3419031_3419742_-\|DUF861-domain-containing-protein	unknown	unknown	gnl\|CDD\|380356
NZ_CP009533.1\|WP_043191741.1\|3411373_3412294_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NZ_CP009533.1\|WP_043191748.1\|3416122_3417415_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|223238
NZ_CP009533.1\|WP_043191745.1\|3413227_3414688_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143421
NZ_CP009533.1\|WP_043191737.1\|3409296_3409923_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198298
NZ_CP009533.1\|WP_043191734.1\|3407443_3407722_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|282822

Protein	Function_ID	Function_description	E-value
NZ_CP009533.1\|WP_043191736.1\|3408037_3409060_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	4.53384e-37
NZ_CP009533.1\|WP_043191751.1\|3418464_3418956_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	3.25503e-44
NZ_CP009533.1\|WP_043191743.1\|3412293_3413091_+\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	4.11048e-63
NZ_CP009533.1\|WP_043191761.1\|3423090_3424518_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143456	cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.	0
NZ_CP009533.1\|WP_043191747.1\|3414825_3415914_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	2.30112e-143
NZ_CP009533.1\|WP_043191739.1\|3410217_3411270_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270307	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic binding domain that serves as the primary high-affinity receptor of an uncharacterized ABC-type polyamine transporter from Rhodopseudomonas palustris Cga009 and related proteins from other bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.71076e-103
NZ_CP009533.1\|WP_043191760.1\|3421946_3422894_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|188320	TIGR03418, chol_sulf_TF, putative choline sulfate-utilization transcription factor. Members of this protein family are transcription factors of the LysR family. Their genes typically are divergently transcribed from choline-sulfatase genes. That enzyme makes choline, a precursor to the osmoprotectant glycine-betaine, available by hydrolysis of choline sulfate.	3.48987e-63
NZ_CP009533.1\|WP_043191767.1\|3427661_3428579_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176168	cd08479, PBP2_CrgA_like_9, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 9. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.75827e-85
NZ_CP009533.1\|WP_043191764.1\|3424636_3426310_-\|GMC-family-oxidoreductase-N-terminal-domain-containing-protein	gnl\|CDD\|273814	TIGR01810, Oxygen-dependent_choline_dehydrogenase, choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli, Staphylococcus xylosus, and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. [Cellular processes, Adaptations to atypical conditions].	1.82673e-94
NZ_CP009533.1\|WP_043191756.1\|3419772_3421056_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	3.54351e-52
NZ_CP009533.1\|WP_043191759.1\|3421102_3421807_-\|HAD-IA-family-hydrolase	gnl\|CDD\|319787	cd02588, HAD_L2-DEX, L-2-haloacid dehalogenase. L-2-Haloacid dehalogenase catalyzes the hydrolytic dehalogenation of L-2-haloacids to produce the corresponding D-2-hydroxyacids with an inversion of the C2-configuration. 2-haloacid dehalogenases are of interest for their potential to degrade recalcitrant halogenated environmental pollutants and their use in the synthesis of industrial chemicals. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.1214e-41
NZ_CP009533.1\|WP_043191765.1\|3426323_3427361_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270307	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic binding domain that serves as the primary high-affinity receptor of an uncharacterized ABC-type polyamine transporter from Rhodopseudomonas palustris Cga009 and related proteins from other bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.20558e-95
NZ_CP009533.1\|WP_043191735.1\|3407735_3408026_+\|HigA-family-addiction-module-antidote-protein	gnl\|CDD\|274228	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair. [Regulatory functions, DNA interactions, Regulatory functions, Protein interactions, Mobile and extrachromosomal element functions, Other].	2.49189e-30
NZ_CP009533.1\|WP_043191753.1\|3419031_3419742_-\|DUF861-domain-containing-protein	gnl\|CDD\|380356	cd02227, cupin_TM1112-like, Thermotoga maritima TM1112 and related proteins, cupin domain. This family includes bacterial and plant proteins homologous to TM1112, a Thermotoga maritima protein of unknown function with a cupin beta barrel domain. TM1112 (also known as DUF861) is a subfamily of RmlC-like cupins with a conserved "jelly roll-like" beta-barrel fold; structures indicate that a monomer is the biologically-relevant form.	3.6338e-15
NZ_CP009533.1\|WP_043191741.1\|3411373_3412294_+\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	8.00973e-86
NZ_CP009533.1\|WP_043191748.1\|3416122_3417415_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|223238	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism].	0
NZ_CP009533.1\|WP_043191745.1\|3413227_3414688_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143421	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.	0
NZ_CP009533.1\|WP_043191737.1\|3409296_3409923_-\|glutathione-S-transferase	gnl\|CDD\|198298	cd03189, GST_C_GTT1_like, C-terminal, alpha helical domain of GTT1-like Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pombe GST-III is implicated in the detoxification of various metals.	2.08465e-41
NZ_CP009533.1\|WP_043191734.1\|3407443_3407722_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|282822	pfam05015, HigB-like_toxin, RelE-like toxin of type II toxin-antitoxin system HigB. This family carries several different examples of type II bacterial toxins of toxin-antitoxin systems including many HigB-like ones. The fold is referred to as the RelE/YoeB/Txe/Yeeu fold suggesting all examples of these are present in this family. Several plasmids with proteic killer gene-systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of these systems results in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.	1.90261e-26

>NZ_CP009533.1|WP_043191748.1|3416122_3417415_+|4-aminobutyrate--2-oxoglutarate-transaminase
MNSALTENQRLLALREQHVPRGIATAHPVVAARAHGAELWDVDNKRYLDFVGGIGVLNVGHNHPAVVEAVRQQVGKVSHVSFQVAAYETYIDVAARLNTLIGGDEHYKSVLFTSGAEAVENAIKIARSYTNRPAVISFRGGFHGRTLLGVTLTGMSQPYKQNFGPFPAEIYHASYPNAYRGISSDDALAQLHELFASDVAPDRVAAILIEPVQGDGGFLAAPVEFLQALRALCTQHGIVLIADEIQAGFGRTGKMFGFQHAGIQPDLVTVAKSLAGGMPLSGVVGRAEMMDAPTPGGLGGTYGGNAVACAAALAVLDLFEHEDLLAQGEQRAVQLREGLLALQKRYPRIGEVRGLGFMLAIEMIKDDAAHSPDVDLTQRIIDEARNAGLLVIKCGLYRNVVRFLAPLVTTAEQVAEALQMLDKALAKAGA
>NZ_CP009533.1|WP_043191747.1|3414825_3415914_+|ABC-transporter-ATP-binding-protein
MNFTEGFESVSVNQVSKHYGSLKALDNVNLKVEAGEFMSLLGPSGSGKTTLLSILGGFIRVSSGNILFGERNVTLMPPHKREIGVVFQNYALFPHMTVGENVAFPLRARGESPSKSRDRVKQALATVELSGYEERSIAALSGGQRQRVALARAIVFEPKLILMDEPLSALDKQLRETMQIELRALHKRLGATMIYVTHDQREALTMSDRIAIMRGGQLVQVDTPRRLHDHPSDDFVASFIGESTLVPLQRGADNGLTLGATPLRTTRPVPASGDVFLALQSEKLLLDSASAGPEWNRLSGRVADIVFQGESLKVFVDLDGGPTVSLRQPSHHEGNLSLPPIGSPMLMRLHPEDTIVVPRAGV
>NZ_CP009533.1|WP_043191745.1|3413227_3414688_+|NAD-dependent-succinate-semialdehyde-dehydrogenase
MLKHSLRDPSLLVEQAYANGQWIDADDGATLAVTNPADGSTIAHVPALQGAETQRAIAAAEACFTTWRQVPAAERAKLLEKWYQLIMDNQEDLALIMTAEQGKPLTESRGEIAYGASFVKWFAEEARRIYGDTIPSPAADRRILVLKQPIGVVAAITPWNFPNAMITRKCAPALAAGCPVLVKPSEMTPLSALALAVLAERAGIPAGVFNVLTGMPAGVGGEMTSNPAVRKLSFTGSTRVGQLLMSQCASTIKRLSLELGGNAPFIVFDDADLDLAIAGVMQSKFRNAGQTCVCANRILVQDGIYARFAERLKAAVAELKVGDGLAEGVTIGPLINAAAVDKVARHISDAVEKGASVAIGGLPQNDGLYVQPTVLLDANADMLLAGEETFGPVAPLFRFHTEEEALALANATPYGLGAYYFTQDMRRAWRVGERLEFGMVGLNTGIISMEVAPFGGMKQSGTGREGSKYGLDEFLEVKAWHIGGLG
>NZ_CP009533.1|WP_043191743.1|3412293_3413091_+|ABC-transporter-permease
MTMFAYLRQLRLSHVLFTVLVAAILLYLIVPVLIVVPMSFSEARFLQFPPKEWSLRWYEAFFQSAEWMSAARVSLITAVVTTAVSLPIGMAAAYAINNSSLKVIRTLQIVLLLPMMVPIILIAAGVFFVYARVGLISSLTGLVLAHIMLALPYVIIALLAGLRNFDMSQEMVARSLGMNRFRAFMAVTLPQIKPSVVSATLFAFITSLDETVVALFISGGDNQTLTKRMFTALRDEIDPTIAAISSILILASLILVVVAGRNKQG
>NZ_CP009533.1|WP_043191741.1|3411373_3412294_+|ABC-transporter-permease
MSNAYLAKSMPDAHSEPPASNADVLAREERRENTSMLLLLAPALFMVVVLLILPMCWLAFQSVQTEEGFSLANYARIFEERIYWDTFYLTFKISLIVTLLSIVMGFPIAYAASRLQGFWANLILICVILPFWTSVLVRSYAWLVLLQRRGVVNQTLLDMGIIDQPLNMMHNTTGTVIGTLHVMLPFMVLPLYSVMKKIPQDLMQASESLGAKPFYTFRRVFLPMAAPGVMAGSILVFVICLGFFITPELLGGGRTILVSMLVQRNVELYHAWGAASAVGLVLLFVVFLIFWGINRFIPIERILGAR
>NZ_CP009533.1|WP_043191739.1|3410217_3411270_+|ABC-transporter-substrate-binding-protein
MTPTTLRAFKFTSLALLVSAFGQAWAEDITFVSQGGAYQEAQSKAILEPAAKKLGLTLKQDSSPKAYPIIKTQVESGKVTWDVVDLPTGDCLRGEAEGLFEKLDPALVPNAAQLPAELKDDYTVGYISYSTVLAYRTDAFKGEKVPKTWADFWDTKTFPGQRSLRNLPRPTLEIALMADGVAPDKLYPLDVERAFKKLEQIKPHIATWWTSGGQSAQLISDGEVDMIQAWNGRITAVQADGAPVAFDYNQGVLETNSLCVLRGTAHKTAAMKFVNEAIDAKLQAALPMIIDYGPLNPEAFKTGTIPAERAAKLPSSPENISRQALLSAKWWASQEGVKAEERWLSFVQKK
>NZ_CP009533.1|WP_043191737.1|3409296_3409923_-|glutathione-S-transferase
MITVHHLNNSRSQRIIWLLEELAVPYEIKRYERDAKTNLAPAELKAVHPLGKSPMIQDGPHTIIESGAIVDYLIRRHGHGALQPDPASATYDEYVQWLHFAEGSAMLPLLLNMYVGRLGDAGAPLHPRIESELENYLGYLNTALSLTPYLVGEELTGADVQMSFVGELAKAQGKLAAYPHLSAWVERLQARPAYQKALEQGGEYKFAK
>NZ_CP009533.1|WP_043191736.1|3408037_3409060_-|ABC-transporter-substrate-binding-protein
MSRISFNRMAAAVGLGFSLLTGAVVAPAQAHAEGEIRIAEQFGIVYLLLNVVRDQHLIEKHGKEAGIDIKVDWTQLSGGSAVNDALLSGAIDIAGAGVGPLLTIWDRTHGRQNVKAVASLGNFPYYLLSNNPKVKTIADFTEKDRIAVPAVGVSVQSRFLQYAAAKQWGDKEYNRLDKYTIAVPHPDATAALIAGGTELSGHFSNPPFQDQALANPNVHVVLNTYDLLGPNSPTVLFATEKFREENPKTYHAFVEALAEAADFAQKDKGAAADTYIRVTGAKIDRAVLLKIIDNPQFEFSITPKNTYPLAEFMHRVGAIKNKPASWQDYFFKDAKPLQGS
>NZ_CP009533.1|WP_043191735.1|3407735_3408026_+|HigA-family-addiction-module-antidote-protein
MPMHNPPHPGEALLEDVLPALNIKIAEFARRLGYARETLSRILHGHAPISPDLAVRLERAGIGKARTWLAIQTDWDLWQAEQREQPPIEPFAVLCS
>NZ_CP009533.1|WP_043191734.1|3407443_3407722_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MIKSFRHKGIKAYFETGSTKGIRADHAKRLARILPILDRAIDAGDVDMPGWRLHPLKGDLMTFWSVTVSGNWRLIFRFDDGDVELLDYLDYH
>NZ_CP009533.1|WP_043191749.1|3417739_3418426_+|hypothetical-protein
MKVTQYKALGFSYATLVDRERGILEGLRPLSVQSPISSSDEQLLHAYRVIAQELGRAGGNASASAFHGQLYQRMAHRLHVIPGWDESVAFGSSSVHWPIFEDAPGALQYLSKFYRLILIAPPHGIDVGTLTQRLPVAFDAVIEPCNDAWHSSLAVELQRLGLERSQLLPVRSTETDDPWNLRVDFPVCTLHRDHRQPWNLSPQALDGKRCEYASLADLAHAHQTALHA
>NZ_CP009533.1|WP_043191751.1|3418464_3418956_+|Lrp/AsnC-family-transcriptional-regulator
MDAATKLDRIDINILVQLQKDGRMTNVSLAEAVGLSPSPCLQRVKRLESAGYISGYEAHVNLAKFASSVTVFTEVTLSDHKRADFVKFESSIRNIDEVLECHLISGGYDYLVRFLCSSIQHYQELMESILDKNIGIDKYFSYIVIKSPVLKSAVPLRSLVRAV
>NZ_CP009533.1|WP_043191753.1|3419031_3419742_-|DUF861-domain-containing-protein
MPPILHYSQPPLDRQLPLAAFALQDDPLAAGRTVHFHDAHNGYAVGASTSVGANLSIEDFPWVELGIVEAGELTLQGEGFDLRLKAGDCFVVPRGIAVRWQHRGQLRRLFMAFPGLVPSTDMPTKPLKIDFAQLLPPSDPPAATVLLTPTPKAWSTTLFSAANLRIGLWQCEAYARKQVQPGYSELMFILEGAVTLSPEQGEACTVNAGEVVVVPAGATNAWASTQTVRKVFCILS
>NZ_CP009533.1|WP_043191756.1|3419772_3421056_-|FAD-binding-oxidoreductase
MTVKSLWAATARPGPALQALQGDRQCDVVIVGAGYTGLSAAHHIALSGREPLILEANTLAWGASGRNGGVVSPKFRVGFPALMQRFDRGTALHMYRTGYAAVDSLVEMVESLGIEDAQLHMGGHIAAAHNELALTGLRNTAEWIKRETGGESSRMIDADQVREMTGSSIFHGGLLTPKAGGIHPLNYARGMANSLHERGVKIFINSPALQVRQEGDRVIVQTPQGRVSAKQVVYATNGYSDQSAATDTLHRRLIPFRSAIIATAPLPVDVLAKLMPGGQVCGDTKRMLRWFRVIGDRLIFGGRGAFGKDDSDSAFATLQRSMGVVFPILRDQPVTFRWSGLVAMTLDYLPHAGQLDPRSFYAIGYNGGGVAMSTYMGKQLAAMTAGEPVQLGLLAGDTFKPIPLHAFRAPGVRLAAGWQQLLDAIGR
>NZ_CP009533.1|WP_043191759.1|3421102_3421807_-|HAD-IA-family-hydrolase
MSFKQFKALTFDVVGTLIDFEAGILNHVREVAGEAGKACSDDDILKAYREARAMPDSGWWPDDLERCYHLIANKLGLPDNDEYARGLALAVENFPAFPDSIEALKRLHKHFKLVATTNSQIWALNHMAKTLDEPFDVRVTVDDVRFEKPDPQFFAYTRGVLATQGIVFEEILHVAQSQYHDIGVAMRLGYQTCWIERRHAQKGSGGTLESEHTKPHYHFTSLAQLADAVEQELG
>NZ_CP009533.1|WP_043191760.1|3421946_3422894_-|LysR-family-transcriptional-regulator
MSNLRRKLPSSGSLFVFEAAARCGSFTRAADELCVSQPAVSRMLSRLEDHLGVQLFERVRGGARLTESGTILYRRVQEGFDTIESAISEISARATGMETITLSVSTAFTTHWLMPRMSRFSERFPTVDMRYQLMSGRIGGPLMDVDLGMRYLDVGSVKAADCLVLPEITLPVCSPQYRSAVPGGKGKSATPALIHMDNQDRTWAAPFDQGGRTDSALVFSDYAVVVQAALLGQGMALGWLNVVSHCLANGQLLPVGDAVTVSARRCCLVTPANRPSRPIVDSVRQWIIEEMQADIARIDALYPQFSLVKKIAEAS
>NZ_CP009533.1|WP_043191761.1|3423090_3424518_+|aldehyde-dehydrogenase-family-protein
MDNALKFYIDGQWVEPSGARRLAVINPATEQAFAEIALGEQADVDVAVAAARRAFTEFAFTTPTERKALLERILESFMARYDDIAAAIMQEVGAPQALAHDWQAGIGKRHLEQMLRTLDSFEFRKTRGTTLINQEPVGVVALITPWNWPINQIACKVAPALAAGCTLVLKPSEIAPINAIIFAEVLHSAGVPAGVFNLINGDGPDVGAALASHPDVDMVSFTGSTRAGVEVARLAAPTVKRVHQELGGKSANILLDDVDLHAAVTAGVNGCFGNSGQSCNAPTRMLVPAALHDQAVAIARQAASTHRVGVPDDPSTTLGPVISDRQYQAIQRMIALGIDEGAQLVCGGLGRPAGLDTGYYVQPTIFAGVDAQMTIAREEIFGPVLVIQPYTDEQDAVRMANDSVFGLAAYVQSASQERARSVALQMRAGSVYINYPSWDPAAPFGGYKQSGNGREYAEWGLEAFLEVKGIVGWGA
>NZ_CP009533.1|WP_043191764.1|3424636_3426310_-|GMC-family-oxidoreductase-N-terminal-domain-containing-protein
MIDYLILGGGSAGCVLAARLSEDPNKRVCLVEAGRDIAPGKMPATIASRYPGRAYLDERNIWQRLTARMAAQGSRRYEQARLLGGGSAINALMTNRGAPDDYDEWGRLGAEGWSWASCLPYFRKLETDCDFTGPLHGDAGPVRIRRTAPAFLSPFVKGVMGVLASRGLPTRPDQNGEWQDGVYVGAIGVSEQGERIPVSVCYLTDEVRARPNLTLRTECVVDRVLFRGTQAVGARLLDRAGAVEEVQAQEVIVCAGAIHSPALLIRSGVGPLDQLLDLGVPLVADRPGVGGNLMEHPSIAVSALLTTQGRTPHVDEHHEQAIVRFSSGLPGTVPGDMHGAILSRSGWHSVGYRLGTMFFWVNKSYSRGRVQVTSLDPLQEPDVRFSMLSEARDLQRLKQAVRMGAETLSAPGLDPLRTVVFPSSYSPRVAKVAMPGRFNALQRGVLSLLLDIAGPLRGWVVRGLVTQGVTLDKLLADDRALSEFVRTNVGGTWHPSGTCRMGRLDDPQAVTLGDGRVIGVTGLRVCDASLIPAIPCANTNVPTIMMAERIADLIKAG
>NZ_CP009533.1|WP_043191765.1|3426323_3427361_-|ABC-transporter-substrate-binding-protein
MKTLSFGSVLSLLYVAMACTTSAQAEQITFVSQGGVYQEAQTKAILDPAAKLLGITIKQDSVPDAWPMVKAQGETGKPVWDVIDTPPSNCIRGGREGLIEPLDLAKMPNVKGMPEAYRTPYSVAYEFYSSVLGYNTKSLKKVPQSWADFWNVKDFPGTRALRNDPMGTLEAALISDGVPRDKLYPLDVDRAYKRLAQIKPDIAVWWSSGGQSAQLLNDGEVDMLMIWNGRVGAVKKDNADVDFTYNDGILQNTQLCILKNAPNLAQAVKFVDTAVSPELQADLPKYIDYGPGNPAAFATGKLSAERGKELPSSPENAAKQALMSEEWWSSAEGIAAKDRWLKFVQ
>NZ_CP009533.1|WP_043191767.1|3427661_3428579_-|LysR-family-transcriptional-regulator
MSMIDDLSFFQQVATRASLTEVARHLGLSLPAVSKRLSQLEQRLGVQLLQRTTRRLSLTPEGVLYLEGGRPILRQLDELESALGTRQPTLHGRLRINATLGFGRRHLAQVVSAFARLHPELEVSLELSSQPMSLLDDQFDLGVFMGEPPDSRLIAVRLLENPRVLCGAPRYLEDMPAPTQVADLAAHNCIVLRQFGSDYAIWRFRKDGRDYAHKVTGTLSSNDGEVALGWALDGHGLILRSRWDVQTHLESGRLQALLTDHQAPQADVYAVYQQRRHTPQRIAAFVHYLREALGQRLPFAMVEHG

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Crispr_ID: NZ_CP009533_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009533_10

3728905-3728992

Orphan

Consensus_repeat	Method
GACGCGGCTCGCGCCGCTGCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009533_10

>merge|NZ_CP009533|10|3728905-3728992|CRISPRCasFinder
GACGCGGCTCGCGCCGCTGCTACAGGGATCGCGAACTCTGTAGTTGGCCATCGCGGGGAGGCCGGACGCGGCTTGCGCCGCTGCTACA

>NZ_CP009533|10|10|3728905-3728992|CRISPRCasFinder
GACGCGGCTCGCGCCGCTGCTACA	GGGATCGCGAACTCTGTAGTTGGCCATCGCGGGGAGGCCG
GACGCGGCTTGCGCCGCTGCTACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009533.1\|WP_043192191.1\|3730023_3732543_-\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|100091
NZ_CP009533.1\|WP_043192180.1\|3724206_3724827_-\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NZ_CP009533.1\|WP_043192193.1\|3733075_3734284_-\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	unknown	unknown	gnl\|CDD\|235513
NZ_CP009533.1\|WP_043192195.1\|3735132_3736722_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173858
NZ_CP009533.1\|WP_043192176.1\|3720464_3721199_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009533.1\|WP_043192178.1\|3721670_3723782_-\|bifunctional-GTP-diphosphokinase/guanosine-3',5'-bis-pyrophosphate-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236843
NZ_CP009533.1\|WP_043192192.1\|3732611_3733067_-\|dUTP-diphosphatase	unknown	unknown	gnl\|CDD\|234802
NZ_CP009533.1\|WP_043192179.1\|3723845_3724109_-\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
NZ_CP009533.1\|WP_043192196.1\|3737614_3737977_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225981
NZ_CP009533.1\|WP_043192190.1\|3729093_3729999_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869
NZ_CP009533.1\|WP_007894701.1\|3737095_3737329_+\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
NZ_CP009533.1\|WP_148308622.1\|3728310_3728856_+\|DUF4124-domain-containing-protein	unknown	unknown	gnl\|CDD\|236912
NZ_CP009533.1\|WP_043192188.1\|3727610_3728252_+\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
NZ_CP009533.1\|WP_043192186.1\|3726748_3727528_-\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197336
NZ_CP009533.1\|WP_043192183.1\|3724839_3725703_-\|YicC-family-protein	unknown	unknown	gnl\|CDD\|236993
NZ_CP009533.1\|WP_043192177.1\|3721258_3721639_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|129116
NZ_CP009533.1\|WP_022960960.1\|3737341_3737497_+\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|179075
NZ_CP009533.1\|WP_043192197.1\|3738140_3739634_+\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143430
NZ_CP009533.1\|WP_043192184.1\|3725868_3726591_+\|ribonuclease-PH	unknown	unknown	gnl\|CDD\|178914
NZ_CP009533.1\|WP_043192194.1\|3734418_3735093_+\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801

Protein	Function_ID	Function_description	E-value
NZ_CP009533.1\|WP_007894701.1\|3737095_3737329_+\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	7.69299e-36
NZ_CP009533.1\|WP_043192180.1\|3724206_3724827_-\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	1.26984e-121
NZ_CP009533.1\|WP_043192193.1\|3733075_3734284_-\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	gnl\|CDD\|235513	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated.	0
NZ_CP009533.1\|WP_043192195.1\|3735132_3736722_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173858	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP009533.1\|WP_043192191.1\|3730023_3732543_-\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP009533.1\|WP_043192178.1\|3721670_3723782_-\|bifunctional-GTP-diphosphokinase/guanosine-3',5'-bis-pyrophosphate-3'-pyrophosphohydrolase	gnl\|CDD\|236843	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase.	0
NZ_CP009533.1\|WP_043192192.1\|3732611_3733067_-\|dUTP-diphosphatase	gnl\|CDD\|234802	PRK00601, dut, dUTP diphosphatase.	1.19507e-95
NZ_CP009533.1\|WP_043192179.1\|3723845_3724109_-\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	5.52144e-26
NZ_CP009533.1\|WP_043192196.1\|3737614_3737977_-\|cupin-domain-containing-protein	gnl\|CDD\|225981	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only].	4.07165e-40
NZ_CP009533.1\|WP_043192190.1\|3729093_3729999_-\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	1.88727e-164
NZ_CP009533.1\|WP_148308622.1\|3728310_3728856_+\|DUF4124-domain-containing-protein	gnl\|CDD\|236912	PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional.	0.00835852
NZ_CP009533.1\|WP_043192188.1\|3727610_3728252_+\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	7.1155e-92
NZ_CP009533.1\|WP_043192186.1\|3726748_3727528_-\|exodeoxyribonuclease-III	gnl\|CDD\|197336	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Neisseria meningitides Nape and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity; for example, Neisseria meningitides Nape and NExo. Nape, found in this subfamily, is the dominant AP endonuclease. It exhibits strong AP endonuclease activity, and also exhibits 3'-5'exonuclease and 3'-deoxyribose phosphodiesterase activities.	1.50385e-137
NZ_CP009533.1\|WP_043192183.1\|3724839_3725703_-\|YicC-family-protein	gnl\|CDD\|236993	PRK11820, PRK11820, YicC family protein.	4.37151e-137
NZ_CP009533.1\|WP_043192177.1\|3721258_3721639_-\|RidA-family-protein	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	1.11266e-65
NZ_CP009533.1\|WP_022960960.1\|3737341_3737497_+\|50S-ribosomal-protein-L33	gnl\|CDD\|179075	PRK00595, rpmG, 50S ribosomal protein L33; Validated.	4.13832e-21
NZ_CP009533.1\|WP_043192197.1\|3738140_3739634_+\|aldehyde-dehydrogenase	gnl\|CDD\|143430	cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like. NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.	0
NZ_CP009533.1\|WP_043192184.1\|3725868_3726591_+\|ribonuclease-PH	gnl\|CDD\|178914	PRK00173, rph, ribonuclease PH; Reviewed.	7.0727e-170
NZ_CP009533.1\|WP_043192194.1\|3734418_3735093_+\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	1.1119e-132

>NZ_CP009533.1|WP_148308622.1|3728310_3728856_+|DUF4124-domain-containing-protein
MAAEAPGMLLYRYVDSRGVTVLDRQGVPPEYVGKGYQVLNQSGRVVQTVPPAPTAEEIRLKQQAEVQSQADAQLLDRYPSLDELDKVSARRRAEIDALIAVATANVQTLQGQQATLQGQAAAQERAGQEVSTSMLDQLRDVQAQTAELQARIAKLQQTRSEADAGFAQQRARLVKVLESPL
>NZ_CP009533.1|WP_043192188.1|3727610_3728252_+|orotate-phosphoribosyltransferase
MQAYQRDFIRFAIDRGVLRFGEFTLKSGRTSPYFFNAGLFNTGAALAELARYYAAAIVDSGIAFDVLFGPAYKGIPLAAATAVQLAEKHQLDVPWCFNRKEAKAHGEGGSLVGSPLAGNVLIIDDVITAGTAIREVMQIIQQQGATAAGVMIALNRQERGNGELSAIQEVERDFGVPVVSIVSLNQVLEFLADDAQLKQHLPAVEAYRAQYGI
>NZ_CP009533.1|WP_043192186.1|3726748_3727528_-|exodeoxyribonuclease-III
MRIISVNVNGIQAAVERGLLSWLQAQNADVICLQDTRASAFELDDAAFQLDGYFLYACDAEVPAQGGVALYSRLQPKAVISGLGFETADRYGRYLQADFDKLSIATLLLPSGMNGDEDLNQKFKLMDDFGKYLDKQRRKRREYIYCGSLYVAQQKLDIKNWRDSQQSPGFLAPERAWMDEIVGNMGYVDALREVSREGDQYSWWPDNEQAEMLNLGWRFDYQLLTPGLRRFVRSARLPRQPRFSQHAPLIVDYDWTLTI
>NZ_CP009533.1|WP_043192184.1|3725868_3726591_+|ribonuclease-PH
MKRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRATGDRNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQADGGTRTASITGAMVALVDALKMVKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPAELNAMLALAQQGMEEIFALQKVALGE
>NZ_CP009533.1|WP_043192183.1|3724839_3725703_-|YicC-family-protein
MVHSMTAFARCERAAAQGTLSWELRSVNHRYLEPHLRLPDALRDLEGSVREALRQGLSRGKVECTLRYTEETGGQPLQVDRERATQLIAAAETVAALLKQPAPLNPLEVLAWPGVLVADASDPQALSTAANELFAQALAELKAGRVREGAELARLINDRLDAMSSEVATLRSLVPQMLSVQRQKILDRCADLQAELDPQRLEQEMVLLAQKSDVAEELDRLATHVTEVRRVLKAGGAAGRRLDFLMQELNREANTLGSKAFDPRSTQAAVNLKVLIEQMREQVQNIE
>NZ_CP009533.1|WP_043192180.1|3724206_3724827_-|guanylate-kinase
MNHSTGTLYIVSAPSGAGKTSLVKALIDAQPSIRVSVSHTTRAMRPGEVCGVNYHFVDRETFIDMIGHGDFLEQAEVFGNLYGTSQSHLQQTLDEGHDLILEIDWQGAEQVRRLMPGARSIFILPPSQLALRQRLTNRGTDSDEIIETRMREAVSEMSHYVEYDYLIINDDFASALEDLKAVFRANRLQQQAQQQRHGNLLAELLA
>NZ_CP009533.1|WP_043192179.1|3723845_3724109_-|DNA-directed-RNA-polymerase-subunit-omega
MARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPKVAWENDKPTVVALREIAEGLIDYAAIAEAEIVEDEPLFAAFEDEANEAV
>NZ_CP009533.1|WP_043192178.1|3721670_3723782_-|bifunctional-GTP-diphosphokinase/guanosine-3',5'-bis-pyrophosphate-3'-pyrophosphohydrolase
MPSIDALADRLSTYLGKEQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVAGILADMHMDHQSLMAAMLHDVIEDTGIAKEALSAQFGETVADLVDGVSKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHNVRVEFEDLGFKAMYPMRSARIYQAVKRARGNRKELVNKIEHSLAHCLSVDGIEGDVSGRQKHIYGIYKKMRGKRRAFNEIMDVYAFRIVVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKANGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSDDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIMELPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESVNLGERLLNKVLNGFDSALDKIPAERIQAMLAEYRLELIEDLLEDIGLGNRMAYVVARRLLATDGGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLENCRNISEIRHNPEKCIQLGWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALAGVTRLTRVRA
>NZ_CP009533.1|WP_043192177.1|3721258_3721639_-|RidA-family-protein
MTKTVITSDKAPAAIGPYSQAIKAGNTVYMSGQIPLDPATMELVEGFEAQTVQVFENLKSVAEAAGGSFKDIVKLNIFLTDLSHFATVNEVMSRYFQQPYPARAAIGVAALPKGAQVEMDAILVIE
>NZ_CP009533.1|WP_043192176.1|3720464_3721199_-|hypothetical-protein
MRHALALSLAALLLGGCASHENVDPNGVWINQKAIDAAAKGASLRQALLANGPTLEWSIDTVAGQARFSNGFEEGEGKLLPQADGEFKVDFYDNGEDTLKIDGDTLQQAASENTPMQTFSKSATPARADTPVGATFEQALYTAYMGGDWKVVEGPGQGGVAHFLPDGRIDGLAGLDRYALCLAGDCAAMSGEFDSLWLEQQQRGNAFIFRRNGNQLEILQALNQALDDEMPNLVPGTRRWLLSK
>NZ_CP009533.1|WP_043192190.1|3729093_3729999_-|acetylglutamate-kinase
MTLERDAATNVAKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKTGFARDIVLMKAVGINPVVVHGGGPQIGDLLKRLSIESHFVDGMRVTDAQTMDVVEMVLGGQVNKDIVNLINRHGGSAIGLTGKDAELIRARKLTVTRQTPEMTKPEIIDIGHVGEVTGVNTDLLNMLVNGDFIPVIAPIGVGPDGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKEGNVLTGLTTEQVAGLIADGTIYGGMLPKIRCALEAVQGGVTTSHIIDGRVPNAVLLEIFTDSGVGTLISNKKIG
>NZ_CP009533.1|WP_043192191.1|3730023_3732543_-|phosphomannomutase/phosphoglucomutase
MKGFPRNAKTAENGQASNARSGAGSQALLIAIAGVLAALLLIWFLVVAPLASRAFQNAEASAAAPFIAGLDAVIARQSGVTTTLAHSPALGAALVSQDPAVIAQAAGAVPLIGGLQGVRLNLPGQAKVDQQGAAPINFAVLDMISRAERGVATPPEAYKVNGRWWIYNVATVQQSSTSPVLGTLVLAFEMQPLTQALALPDAEFGQLRLQQSVLGSPPQVLAEQGSNASATRYPYPTANPNWRLEFSPGPLFQPPFAWSSLGLMMLAAAIAIGCAALAVRLAQRQLYARIEADARQLEQLLDELSGGKAVKAFGLSLAPLNGLAQGLARLSLRERTAHPTDSTSAAPAPAPVSDNWTNPIFQDIDMLELDVADPVVEASDLPPALPHGIFRAYDIRGIVGSTLNADTAYWVGRAVGAQSLAMGEANVNVGRDGRLSGPELVQPLIQGLVDAGCHVSDVGLVPTPALYYANHVLTGRSGVMLTGSHNPPDYNGFKVVIAGDTLANEQILALHQRLVHNDLTQGQGSVEKVEILERYVAQIRDDIVLTRRLKVVVDCGNGAGAVVAPQLIQTLGCEVIPLFCEVDGHFPNHHPDPSKAANLQALIAKVSETGADLGLAFDGDADRVGVVTNTGRIIHPDRLLMLFARDVLSRNPGADVIYDVKCTRRLGPLIKEHGGRPVMWKTGHSLIKKEMKRTGALVAGEMSGHIFFKERWFGFDDGIYSAARLLEILSRENLSAEDVFAAFADDVSTPELNIPVTEDNKFSIIDALHHGAQWGDAQLTLIDGVRVDYPRGWGLVRASNTTPVLVTRFEAEDAEELERIQGVFRTQLLKVAPDLHLPF
>NZ_CP009533.1|WP_043192192.1|3732611_3733067_-|dUTP-diphosphatase
MHALQAKILDPRLGRDFPLPHYATPGSAGLDLRAMLQQDTLLAPGQTLLIPTGLSIYIGDPDLAAMILPRSGLGHKHGIVLGNLVGLIDSDYQGELMVSCWNRGDSAFTLTVGERIAQLVLVPVVQAHFELVESFDESQRGTGGFGHSGTQ
>NZ_CP009533.1|WP_043192193.1|3733075_3734284_-|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC
MQRLYRKRIILGVGGGIAAYKSAELVRRLLEQGAEVRVVMTKGGSEFITPLTLQALSGHPVHMDLLDPAAEAAMGHIDLAKWADLVLIAPATADLMARLAQGLANDLLTTLVLATDATVAIAPAMNQAMWRDPATQDNLHLLRSRGLKVFGPAAGSQACGDIGLGRMLEATELALCAAECFEHLALTGKHVLITAGPTQENIDPVRYITNHSSGKMGFALAEAAVEAGARVTLICGPVHLPTPDRVTRIDVVSARDMLAACEAGMPCDVFIASAAVADYRPEVVAAQKLKKDPSSGDGLLLRMVRNPDILATIAGRADRPFSVGFAAETEHLLDYAARKLKDKNLDLIVANDVANPSIGFNSEENACSVIDRQLQTTAFAQTSKGKIARQLVSFIAKRLDQV
>NZ_CP009533.1|WP_043192194.1|3734418_3735093_+|DNA-repair-protein-RadC
MSIRDWPEAERPRERLLAHGPGSLSDGELLAIFLRTGVAGHSAVDVARNLLIRFGGLRALLEADQKTFSQHFGMGPAKYAQLQASIEMNRRYMAERLNRGPAMEDPESVRRYLKAKLRHERQEVFGCLFLDTKHQPLGFEVLFRGTIDSAAVYPREVVKRAIALNAAALILAHNHPSGNPTPSQADRSLTQRLKESLALVDVRVLDHIIIGEGEPLSMVEHGWM
>NZ_CP009533.1|WP_043192195.1|3735132_3736722_-|ABC-transporter-substrate-binding-protein
MRLATLPFLLAPLFASALVHAAPLTVCTEASPEGFDVVQYNSLTTTNASADVLMNRLVEFDAKAGKVIPSLADSWSVSADGLTYTFKLHPGVKFHGTSYFKPDRELNAQDVLFSFQRMLDPANPWHKVAQSGFPHAQSMQLPGLIKNIEAPDPLTVRFTLNHPDATFLATLSMGFASIYSAQYADQLMKAGTPEKLNSQPIGSGPFVFVRFEKDAVVRYKANPDYFAGKPAVDPLLFAITPDANVRLQKLRRNECQLTLSPKPLDIAAAADDKSLQVIKTEAFMTAFLAINSQHPPLDKPEVRQAINLAFDKDSYLKAVFEGTAEAANGPYPPNTWSYARDLPGYKQDAAKARELLAKAGLKDGFNTTIWTRPSGSLLNPNPSLGAQLLQADLAKVGIKAEIRVIEWGELIRRAKAGEHDLLFMGWAGDNGDPDNFLTPQFSCAAVQSGTNFARYCDKGLDKLISDGKAVTDQAQRSKLYQQAQALIQKQALWLPLAHPTAAVLARKGVEGYTVSPFGRQDFSRVSVEK
>NZ_CP009533.1|WP_007894701.1|3737095_3737329_+|50S-ribosomal-protein-L28
MSRVCQVTGKGPVTGNNISHANNKTRRRFLPNLQHHRFWVEEEKRFVRLRVSAKGMRIIDKRGITVVLAEIRKAGKI
>NZ_CP009533.1|WP_022960960.1|3737341_3737497_+|50S-ribosomal-protein-L33
MRELIRLISSAGTGHFYTTDKNKRTTPDKIEIKKFDPVVRKHVMYKEGKIK
>NZ_CP009533.1|WP_043192196.1|3737614_3737977_-|cupin-domain-containing-protein
MNITSIVDFAQHSVTPERYRPAPEKILGGDPEQTLFNHYQSPCGQMNAGVWEGQVGQWKVNYTEHEYCEIVQGVSVLRDDQGNGKTLRAGDRFVIPAGFTGTWEVLEACRKIYVVFEAKA
>NZ_CP009533.1|WP_043192197.1|3738140_3739634_+|aldehyde-dehydrogenase
MTTLTRADWEQRAQQLKIEGRAFINGEYTDAVSGQTFECVSPVDGRLLAQVASCDAADAQRAVENARATFDSGVWAKAAPAKRKATLIRFAGLLREHAEELALLETLDMGKPISDSLNIDVAGSANALAWSGEAIDKVYDEVAPTPHDQLGLVTREAVGVVAAVVPWNFPLMMACWKLGPALATGNSVILKPSEKSPLTAIRIAQLAIEAGIPKGVLNVLPGHGHTVGKALALHMDVDTVVFTGSTRIAKQLMIYAGESNMKRVWLEAGGKSPNIVFADAPDLQAAADSAASAIAFNQGEVCTAGSRLLVERSVKERFLPMVVEALKAWKPGNPLDPATNVGALVDTQQMNTVLSYIAAGQEGGATLLVGGKRILEETGGTYVEPTIFDGVTNAMKIAQEEIFGPVLSVLTFDTAEEAVRIANDSAYGLAAAVWTADISKAHLTAKALRAGSVWVNQYDGGDMTAPFGGFKQSGNGRDKSLHAFDKYTELKATWIKL

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Crispr_ID: NZ_CP009533_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009533_11

3831577-3831684

Orphan

Consensus_repeat	Method
CCCTGTAGCAGCGGCGTGAGCCGCGTCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009533_11

>merge|NZ_CP009533|11|3831577-3831684|CRISPRCasFinder
CCCTGTAGCAGCGGCGTGAGCCGCGTCCGGGTGCGATGCGGTGTACCTGCCGCACCGCAGTCCAGAAGACACGGGGGACCCCTGTAGCAGCGGCGCGAGCCGCGTCCG

>NZ_CP009533|11|11|3831577-3831684|CRISPRCasFinder
CCCTGTAGCAGCGGCGTGAGCCGCGTCCG	GGTGCGATGCGGTGTACCTGCCGCACCGCAGTCCAGAAGACACGGGGGAC
CCCTGTAGCAGCGGCGCGAGCCGCGTCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009533.1\|WP_043192292.1\|3843177_3843930_-\|DUF2059-domain-containing-protein	unknown	unknown	gnl\|CDD\|378261
NZ_CP009533.1\|WP_043192287.1\|3837928_3839023_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP009533.1\|WP_043192279.1\|3827686_3828652_+\|sulfonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270275
NZ_CP009533.1\|WP_162473371.1\|3840257_3841139_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182646
NZ_CP009533.1\|WP_043192283.1\|3831736_3833113_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP009533.1\|WP_043192278.1\|3826987_3827581_+\|NADPH-dependent-FMN-reductase	unknown	unknown	gnl\|CDD\|182557
NZ_CP009533.1\|WP_043192284.1\|3833682_3835041_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP009533.1\|WP_043192274.1\|3821523_3822354_-\|taurine-ABC-transporter-permease-TauC	unknown	unknown	gnl\|CDD\|182276
NZ_CP009533.1\|WP_043192281.1\|3829886_3830675_+\|aliphatic-sulfonate-ABC-transporter-permease-SsuC	unknown	unknown	gnl\|CDD\|183100
NZ_CP009533.1\|WP_043192277.1\|3826104_3826743_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239314
NZ_CP009533.1\|WP_043192280.1\|3828728_3829877_+\|FMNH2-dependent-alkanesulfonate-monooxygenase	unknown	unknown	gnl\|CDD\|234821
NZ_CP009533.1\|WP_043192282.1\|3830671_3831484_+\|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183055
NZ_CP009533.1\|WP_043192288.1\|3839079_3840222_+\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_CP009533.1\|WP_043192291.1\|3842188_3843112_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP009533.1\|WP_043192276.1\|3824611_3825952_+\|OprD-family-porin	unknown	unknown	gnl\|CDD\|335381
NZ_CP009533.1\|WP_043192290.1\|3841135_3842020_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182574
NZ_CP009533.1\|WP_052393453.1\|3822350_3823187_-\|taurine-ABC-transporter-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|183056
NZ_CP009533.1\|WP_043192285.1\|3835057_3836422_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NZ_CP009533.1\|WP_043192275.1\|3823215_3824196_-\|taurine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226904
NZ_CP009533.1\|WP_043192286.1\|3836635_3837733_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377

Protein	Function_ID	Function_description	E-value
NZ_CP009533.1\|WP_043192292.1\|3843177_3843930_-\|DUF2059-domain-containing-protein	gnl\|CDD\|378261	pfam09832, DUF2059, Uncharacterized protein conserved in bacteria (DUF2059). This domain, found in various prokaryotic proteins, has no known function.	0.000253957
NZ_CP009533.1\|WP_043192287.1\|3837928_3839023_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP009533.1\|WP_043192279.1\|3827686_3828652_+\|sulfonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270275	cd13557, PBP2_SsuA, Substrate binding domain of sulfonate binding protein, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes the sulfonate binding domains SsuA found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.23501e-145
NZ_CP009533.1\|WP_162473371.1\|3840257_3841139_+\|ABC-transporter-permease-subunit	gnl\|CDD\|182646	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	1.19646e-148
NZ_CP009533.1\|WP_043192283.1\|3831736_3833113_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	6.94444e-157
NZ_CP009533.1\|WP_043192278.1\|3826987_3827581_+\|NADPH-dependent-FMN-reductase	gnl\|CDD\|182557	PRK10569, PRK10569, NAD(P)H-dependent FMN reductase; Provisional.	5.59192e-107
NZ_CP009533.1\|WP_043192284.1\|3833682_3835041_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	9.66024e-156
NZ_CP009533.1\|WP_043192274.1\|3821523_3822354_-\|taurine-ABC-transporter-permease-TauC	gnl\|CDD\|182276	PRK10160, PRK10160, taurine ABC transporter permease TauC.	4.18783e-119
NZ_CP009533.1\|WP_043192281.1\|3829886_3830675_+\|aliphatic-sulfonate-ABC-transporter-permease-SsuC	gnl\|CDD\|183100	PRK11365, ssuC, aliphatic sulfonate ABC transporter permease SsuC.	6.63508e-137
NZ_CP009533.1\|WP_043192277.1\|3826104_3826743_+\|peroxiredoxin	gnl\|CDD\|239314	cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes and lung. The seed-specific plant 1-cys PRXs protect tissues from reactive oxygen species during desiccation and are also called rehydrins.	7.24488e-133
NZ_CP009533.1\|WP_043192280.1\|3828728_3829877_+\|FMNH2-dependent-alkanesulfonate-monooxygenase	gnl\|CDD\|234821	PRK00719, PRK00719, alkanesulfonate monooxygenase; Provisional.	0
NZ_CP009533.1\|WP_043192282.1\|3830671_3831484_+\|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183055	PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional.	4.25274e-167
NZ_CP009533.1\|WP_043192288.1\|3839079_3840222_+\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_CP009533.1\|WP_043192291.1\|3842188_3843112_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	8.42386e-41
NZ_CP009533.1\|WP_043192276.1\|3824611_3825952_+\|OprD-family-porin	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	2.77065e-139
NZ_CP009533.1\|WP_043192290.1\|3841135_3842020_+\|ABC-transporter-permease-subunit	gnl\|CDD\|182574	PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	1.31172e-121
NZ_CP009533.1\|WP_052393453.1\|3822350_3823187_-\|taurine-ABC-transporter-ATP-binding-subunit	gnl\|CDD\|183056	PRK11248, tauB, taurine ABC transporter ATP-binding subunit.	2.15401e-162
NZ_CP009533.1\|WP_043192285.1\|3835057_3836422_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_CP009533.1\|WP_043192275.1\|3823215_3824196_-\|taurine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226904	COG4521, TauA, ABC-type taurine transport system, periplasmic component [Inorganic ion transport and metabolism].	1.36231e-160
NZ_CP009533.1\|WP_043192286.1\|3836635_3837733_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.59514e-180

>NZ_CP009533.1|WP_043192282.1|3830671_3831484_+|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein
MTVLKEQPQNLRRGIPLAVRQLRKTFGEREVLRDIDLNIPAGQFVAIVGRSGCGKSTLLRLLAALDQPTSGQLLAGTGPLSDARNDTRLMFQEARLLPWKRVIDNVGLGLSGNWREQALQALEAVGLAERANEWPAALSGGQKQRVALARALIHKPRLLLLDEPLGALDALTRIEMQQLIESLWRKHGFTVLLVTHDVSEAVAIADRVILIEEGRIGLDLAVELPRPRARGSHRLAALETEVLNRVLALPVNPPEPEPPSPLPTQLRWAR
>NZ_CP009533.1|WP_043192281.1|3829886_3830675_+|aliphatic-sulfonate-ABC-transporter-permease-SsuC
MSTSTRIIHRLAPWALPVGLLLIWQLSVSVGWLSTRILPAPSAVLEAGVALFKSGEIWTHLAISGWRAGIGFAIGGGIGLVLGLISGLSRWGERLLDTSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYLNTYHGIKNADPALVEMARSYGLSGFRLFWQVILPGALPSILVGVRFALGLMWLTLIVAETISASSGIGYLAMNAREFLQTDVVVLAIVLYAILGKLADLAARGLERVWLRWHPAYQSKGGAA
>NZ_CP009533.1|WP_043192280.1|3828728_3829877_+|FMNH2-dependent-alkanesulfonate-monooxygenase
MSLNIFWFLPTHGDGHYLGTSEGARAVDHGYLQQIAQAADRLGYGGVLIPTGRSCEDSWLVAASLIPVTQRLKFLVALRPGIISPTVAARQAATLDRLSNGRALFNLVTGGDPDELSGDGLFLTHEERYEASVEFTRIWRRVLEGETVDYDGKHLTVKGAKLLYPPVQQPRPPLYFGGSSDAAQDLAAEQVEMYLTWGEPPAAVAEKIAQVREKAAKLGRTVRFGIRLHVIVRETNEEAWQAAERLIAHVDDDTIARAQASLARFDSVGQQRMAALHGGSKDQLEVSPNLWAGVGLVRGGAGTALVGDGPTVAERVKEYAALGIDTFIFSGYPHLEESYRVAELLFPHLDVQRPEAPTGANYVSPFGEMVANDILPKAAAKR
>NZ_CP009533.1|WP_043192279.1|3827686_3828652_+|sulfonate-ABC-transporter-substrate-binding-protein
MRTLFLRRGVVALFAAAVSFGAITKAQAETLRIGYQKYGTLVLLKAKGTLEKRLAAQGVDVKWTEFPGGPQLLEGLNVGSIDFGVTGETPPVFAQAAGADLLYVAYEPPAPTSEAILVPKDSPIRSVSELKGKKVALNKGSNVHYLLVRALEEAGLKYSDIQTVFLPPSDARAAFERGSVDAWVIWDPYQAAAEQQLQARTLRDGQGIVDNLQFYLATKPYAEKHPEVITALVEEVRAVGEWSKAHPEEVTAQVAPLLGLPADITLTSVKRQGYGAQFLNLQTVAAQQKIADSFHQLKLIPKPLRIQDVIWTPPANVAKAP
>NZ_CP009533.1|WP_043192278.1|3826987_3827581_+|NADPH-dependent-FMN-reductase
MLVVSLGGSPSLRSRSGVLLERSKQWLQRQGVEVVTFQVRDFPAEDLLHARFDSPHVLLFIELVGKADGLVVATPVYKASFSGALKTLLDLLPERALSNKVVLPIATGGSIAHMLAVDYALKPVLASLKAQEMLQGIFADDSQIAYGEGGVAAQLAPALEQRLESALQEFHAFLLRRPQTHDPALLTQSLRSARWSI
>NZ_CP009533.1|WP_043192277.1|3826104_3826743_+|peroxiredoxin
MTIRLGDIAPDFQQESSQGSISFHQWLGDKWGVLFSHPADFTPVCTTELGFTAKLADEFAKRNVKAIALSVDPVESHHRWIGDIDETQGTTVNFPILADVDRKVSELYDLIHPNANDTLTVRSLFVIDPNKKVRLTITYPASTGRNFHEILRVIDSLQLTDNHKVATPANWQDGDDVVIVPSLKDEEEIKQRFPKGYKAVKPYLRLTPQPNR
>NZ_CP009533.1|WP_043192276.1|3824611_3825952_+|OprD-family-porin
MYKQSLAVAIALASISTSVYAADPAPSGFLDASKVTLSSRTMYFRNDTREGTANDQEESAQGFLFNFLSGYTAGTVGFGLDVQAMTGIHLDGGRGHHPNANTFFPSDSDGSAEKSWSRLGANGKVKFSKTELKVGSALQPNLPILVSNDGRLLPAVYQGGILTSKDLDNFTFTAGRLNKSAGRATSNYSGLGVGGATQDSNNFQFGGVDWKVTKDLTLQVYHAQLEDYYKQTFLGAVHVLPLGEDQSFKTDLRYFDSRSDGKNGDVGYRFNNNSGYAKNPGKIDNKTWTAIFTYSLAGHAVTAGYQQVGDDGGMPFINNGNVVDGNGRNEGNGGSSVYLFTDSMINSFTRAGENTTFAQYSYDFSRIGVPGLKASVAYLHADDIKAAGTGDSSNSEWERDMRVDYVIQSGLLKNFGATLRNGTYRSDVGTNTDQTRLIFNYTYAFK
>NZ_CP009533.1|WP_043192275.1|3823215_3824196_-|taurine-ABC-transporter-substrate-binding-protein
MAKQRFARKLFTTLALTGLAMGIQAAPLTVGYQTGIDPSKVPQADGVYEKAIGEKIDWRRFNSGPEVVTAIASGDVQIGNLGSSPLAAATSRKLPIVAFIVSAQINSAEALVVRNGSGIDNPQQLVGKTIATPFVSTSHYSLLGALKHWGLEGKVKVVNLQPAEIAAAWKRGDIDGAFVWSPALGEIRKSGKTLTDAAQVGQWGAPTFEVWVARKDYAEKHPEVIAKFAKVTLDSFADYAKNQAQWTADSEPVRKIAKLTGANAADVPDLLAGSTYPDAEAQALEALLGGGTAKAVAKTAEFLKEQGKLEAVLPDYTPYVSAKFVQ
>NZ_CP009533.1|WP_052393453.1|3822350_3823187_-|taurine-ABC-transporter-ATP-binding-subunit
MAQLILDRIGAHYPGAAQPVLQDISLSLGPQQLCVALGPSGSGKTSLLNLIAGFVPPSSGRITLDGVAVKGPGADRGVVFQDDALLPWQDVLANVAFGLQLAGIGRAQREARAREMLALVDLAGFAERQVWQLSGGQRQRVGLARALAADPQVLLMDEPFGALDAFTREQMQELLLQVWQRTAKPVFLITHDIEEAVFLATDLILLAPNPGHVEERLSLDFGQRYAAGESARAIKSDPRFIETREHVLTQVFAQREFAQRGCAQRLSPQGTTAHEELA
>NZ_CP009533.1|WP_043192274.1|3821523_3822354_-|taurine-ABC-transporter-permease-TauC
MSLYSTQAIDSARAPAARRPWRLSTQAISTLTLAGVLLLWWAVTATELIEPLFLPSPGAVLSKAWLLATQGYMDATLWQHLAASLGRIGLALFFAVLFAIPVGIAIGHNRIAQGILDPLIEFYRPIPPLAYLPLIVIWCGIGETSKVLLIYLAIFAPIAIATATGVRNVDPARLRAAQSLGATRAQLIRHVIVPSALPEILTGIRIGLGVGWSTLVAAELIAATSGLGFMVQSAAQFLVTDVVVLGILVIALIAFGLEMGLRALQRRLVPWHGQSH
>NZ_CP009533.1|WP_043192283.1|3831736_3833113_-|glutamine-synthetase
MSVPPRAVQLNEANAFLKEHPEVLYVDLLIADMNGVVRGKRIERTSLHKVYEKGINLPASLFALDINGSTVESTGLGLDIGDADRICYPIPDTLCNEPWQKRPTAQLLMTMHELEGEPFFADPREVLRQVVEKFDAMGLTICAAFELEFYLIDQENVNGRPQPPRSPISGKRPHSTQVYLIDDLDEYVDCLQDILEGAKEQGIPADAIVKESAPAQFEVNLHHVADAMKACDYAVLLKRLIKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISILDKDGKNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGAQFYVPNSPCWGLDNRTVALRVPTGTPDAVRLEHRVAGADANPYLLMAAVLAGVHHGLTNQVEPNEPVTGNSYEQNEQSLPTNLRDALRLLDDSEVLAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NZ_CP009533.1|WP_043192284.1|3833682_3835041_+|glutamine-synthetase
MSPNLDQLTDWLKDHKITEVECLIADLTGITRGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYELLDPADIDMICRPDENAVFLVPWAIEPTAQVIHDTYDKQGNPIELSPRNVLKKVLKLYADKGWQPIVAPEMEFYLTKRCEDPDFPLQPPIGRSGRPETGRQSFSIEAANEFDPLFEDVYDWCEAQNLDLDTLIHEDGTAQMEINFRHGNALHLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDSATGKNIFANEDGSMSQLFLHHVGGLQKFIPELLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDATPQNRRVENRLPGADANPYLAIAASLLCGYIGMVEGLNPSAPVQGRGYERRNLRLPLTIEDALERMENCKTVEKYLGKKFVVGYVAVKRAEHENFKRVISSWEREFLLFAV
>NZ_CP009533.1|WP_043192285.1|3835057_3836422_+|aspartate-aminotransferase-family-protein
MSNNNPQTQHWQDLSSAHHLAPFSDYTQLKNKGPRIITKADGVYLWDSEGHKILDGMAGLWCVAIGYGREELVQAASTQMRELPYYNLFFQTAHPPALELAKAIADLAPAGMNHVFFTGSGSEGNDTVLRLVRHYWALKGKPEKKVIISRVNGYHGSTVAGASLGGMSGMHEQGDLPIPGIVHIAQPYWFGEGGDMTPDEFGVWAAEELEKKILEVGEDNVAAFIAEPIQGAGGVIIPPESYWPKVKEVLARYDILFVADEVICGFGRTGHWFGSDYYDLAPDLMTIAKGLTSGYIPMGGVIVRDEVVQVINQGGDFNHGFTYSGHPVAAAVGLENLRILRDEHIVDNVRTEAAPYLQKRLRELQDHPLVGEVRGLGMLGAIELVKDKATRRRHEGRGAGMICRQFCFDNGLIMRAVGDTMIIAPPLVISHAEIDELVSKARLCLDLTLEALGG
>NZ_CP009533.1|WP_043192286.1|3836635_3837733_+|polyamine-ABC-transporter-substrate-binding-protein
MKIFGKTLLAAALMGAMASAAQADDKVLHVYNWSDYIAPDTVKQFEAESGIKVVYDVFDSNETLEAKLLAGKSGYDVVVPSNNFLAKQIKAGVYQELDRSKLPNWKNLNESLLKAVSVSDPDNKHAFPYMWGSIGIGFNADKVKAALGADAPTNSWDLLFKPENAAKLKSCGISFLDSPTEMLPIALHYLGYPTDSQDKKQLAEAEALFLKVRPSIGYFHSSKYISDLANGNICVAVGYSGDIYQAKSRAEEAGGKVKVSYNIPKEGAGSFFDMVAIPKDAENVEGAYKFMTFLMKPEVMAEITNSVQFPNGNQAATALVDKAISGDPGIYPPADVQAKLYAIADLPAATQRIMTRSWTKIKSGK
>NZ_CP009533.1|WP_043192287.1|3837928_3839023_+|polyamine-ABC-transporter-substrate-binding-protein
MSHSLFRKAMLIGAGLTLALNAQAAGTVHIYNWSDYIGESTLADFEAASGIKPVYDVFDSNETLEGKLLAGHTGYDVVVPSNHFLGKQIKAGAFQKLDKSQLSNYSNLDPVLLKRLEKNDPGNQYAVPYLWGTNGIGYNVDKIKAVLGVDKIDSWAMVFEPENIKKLSKCGVAFLDSPDEMFPAVLNYMGLDPNTTDEKLYKQAEAKLLKVRPYVTYFHSSKYISDLANGNICVAVGYSGDIFQAKARAEEAGKGIQLAYSIPKEGGNLWFDMLAIPADAPDAKHGLAFIDYLLKPEVIAKVSDYVGYANPNLKSGEFMDQDVRNDEAVYPPQAIQDKLYVNVELPPKVQRLMTRSWTKVKSGK
>NZ_CP009533.1|WP_043192288.1|3839079_3840222_+|polyamine-ABC-transporter-ATP-binding-protein
MAVASSAYKKALEGSQQPKKVLVRIEKVTKKFDETVAVDDVSLEINQGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGVDITDMPPYERPINMMFQSYALFPHMTVAQNIAFGLKQDKLPAAEIDARVAEMLKLVQMTQYGKRKPHQLSGGQRQRVALARSLAKKPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGWIAQIGSPIDIYETPTSRLVCEFIGNVNLFEGQVVEDMEGYALISSPELERSIYVGHGVSTAAEDKNVTYAIRPEKMLVTTEQPTSEHNWSRGKVHDIAYLGGHSVFHVQLPCGKLVQSFVANAERRNARPTWDDEVFVWWEDDSGVVLRS
>NZ_CP009533.1|WP_162473371.1|3840257_3841139_+|ABC-transporter-permease-subunit
MPDGRQMVIGVPFLWLFLFFMLPFFIVLKISFAEADVAIPPYTEIWSYAEQKFELILNFANYALLTEDDLYISAYLGSLKMAFFSTLICLLVGYPMAYAISKARKDLQTVLLLLIMMPTWTAILIRVYAWMGILSNNGLLNAFLMWLGVIDQPLQILNTNLAVYIGVVYAYLPFMILPLFANLVKHDNSLLEAASDLGSSTFNSFWKITVPLSKNGIIAGCMLVFIPVVGEFVIPELLGGPETLMIGRVLWQEFFNNRDWPVASALAVLMLAILIVPIVLFNRSQAKELEGKP
>NZ_CP009533.1|WP_043192290.1|3841135_3842020_+|ABC-transporter-permease-subunit
MKRFGFSKLILILGLVFIYAPMLILVIYSFNASRLVTVWGGWSVQWYVGLLDNDQLMGAVMRSLEIACYTAVAAVALGTMAAFVLTRISRFKGRTMFGGLVTAPLVMPEVITGLSLLLLFVAMAQVIGWPQERGIATIWIAHTTFCASYVAVVVSSRLRELDLSIEEAAMDLGARPWKVFFLITIPMIAPSLAAGGMMSFALSLDDLVLASFVSGPGSTTLPMEVFSAVRLGVKPEINAVASLILLAVSLVTFLVWYFGRRAEERRRKAIQQAIEESAANAWQQPTAQRPVASV
>NZ_CP009533.1|WP_043192291.1|3842188_3843112_+|alpha/beta-hydrolase
MSPAFQPDTLRTSLLPLNARQPLSAEAQAYRRFYQLDLPAQSWLGRFSAAGFDLVAQVWIPQRAVATLFVMHGFYDHMGLYRHAVQWAMERNFAVISCDLPGHGLSSGERASIHNFADYQATLDGLFAEASLLQLPQPWHLLGQSTGGAIIVDHLLHHGEQSPAQGRVLLMAPLVRPSAWGVSKLSYRVLKPFVSGIARRFSANTNDPDFMPFLQADPLQPRRLPTAWVGALVQWVQHIEAAPRSPRTVLIVQGDDDDTVDWHHNLKVLRAKFADVRVLQVAGARHHLVNELPAIRAQCFGFFDQHL
>NZ_CP009533.1|WP_043192292.1|3843177_3843930_-|DUF2059-domain-containing-protein
MRRVLVFLMMFSTTPAWADDHDQLYKAAGWPEQRAHFSDALKAAQQRYQSSLPPAVFQALVSNSDQRFAAQAMDQRAEARLRQGLADPKPALAFFESPLGRKIVAAELLATRSDQLAKNAQGLPKLQVESTRALLIGHLAQALPARQAGAEVSLAIAGVAADSLSSMIPGLLGGGQAAGLLDGQRERLQQQIAIDLNNTLLYVYRELSDPQLEEFVGFAESAAGQAYYQAALEAVRAGLAVGQPQDRAGN

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Crispr_ID: NZ_CP009533_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009533_12

4279992-4280072

Orphan

Consensus_repeat	Method
GGAGCGGGCTCTGCCCGCGAAGATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009533_12

>merge|NZ_CP009533|12|4279992-4280072|CRISPRCasFinder
GGAGCGGGCTCTGCCCGCGAAGATCTACCAGCCTGCCTCAAGCCCCGCCCCCTGTAGGAGCGGGTTCTGCCCGCGAAGATC

>NZ_CP009533|12|12|4279992-4280072|CRISPRCasFinder
GGAGCGGGCTCTGCCCGCGAAGATC	TACCAGCCTGCCTCAAGCCCCGCCCCCTGTA
GGAGCGGGTTCTGCCCGCGAAGATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009533.1\|WP_043192684.1\|4268283_4269291_-\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224616
NZ_CP009533.1\|WP_043192696.1\|4282254_4283124_-\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|181919
NZ_CP009533.1\|WP_043192695.1\|4281051_4282062_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237171
NZ_CP009533.1\|WP_043192700.1\|4287042_4287906_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|132382
NZ_CP009533.1\|WP_043192702.1\|4290866_4291694_+\|phosphonoacetaldehyde-hydrolase	unknown	unknown	gnl\|CDD\|184075
NZ_CP009533.1\|WP_043192688.1\|4272227_4273511_-\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|234607
NZ_CP009533.1\|WP_043192685.1\|4269544_4270873_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673
NZ_CP009533.1\|WP_052393478.1\|4289126_4290851_+\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NZ_CP009533.1\|WP_043192692.1\|4277818_4279288_+\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|236222
NZ_CP009533.1\|WP_043192686.1\|4271006_4271333_+\|DUF1820-family-protein	unknown	unknown	gnl\|CDD\|370154
NZ_CP009533.1\|WP_043192697.1\|4283132_4283552_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009533.1\|WP_043192701.1\|4288050_4289127_+\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NZ_CP009533.1\|WP_162473373.1\|4279406_4279973_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211334
NZ_CP009533.1\|WP_043192690.1\|4274189_4274987_-\|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
NZ_CP009533.1\|WP_043192694.1\|4280097_4280577_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP009533.1\|WP_043192699.1\|4284351_4286874_+\|ATP-dependent-helicase-HrpB	unknown	unknown	gnl\|CDD\|273901
NZ_CP009533.1\|WP_043192698.1\|4283835_4284273_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|224159
NZ_CP009533.1\|WP_043192689.1\|4273528_4274155_-\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
NZ_CP009533.1\|WP_043192687.1\|4271357_4271912_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP009533.1\|WP_043192691.1\|4275311_4277738_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|274362

Protein	Function_ID	Function_description	E-value
NZ_CP009533.1\|WP_043192684.1\|4268283_4269291_-\|PhoH-family-protein	gnl\|CDD\|224616	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms].	5.34144e-153
NZ_CP009533.1\|WP_043192696.1\|4282254_4283124_-\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|181919	PRK09509, fieF, CDF family cation-efflux pump FieF.	2.00491e-105
NZ_CP009533.1\|WP_043192695.1\|4281051_4282062_+\|hypothetical-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	0.000116127
NZ_CP009533.1\|WP_043192700.1\|4287042_4287906_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|132382	TIGR03339, phn_lysR, aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466). [Regulatory functions, DNA interactions].	2.6068e-130
NZ_CP009533.1\|WP_043192702.1\|4290866_4291694_+\|phosphonoacetaldehyde-hydrolase	gnl\|CDD\|184075	PRK13478, PRK13478, phosphonoacetaldehyde hydrolase; Provisional.	4.46425e-146
NZ_CP009533.1\|WP_043192688.1\|4272227_4273511_-\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
NZ_CP009533.1\|WP_043192685.1\|4269544_4270873_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NZ_CP009533.1\|WP_052393478.1\|4289126_4290851_+\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP009533.1\|WP_043192692.1\|4277818_4279288_+\|AMP-nucleosidase	gnl\|CDD\|236222	PRK08292, PRK08292, AMP nucleosidase; Provisional.	0
NZ_CP009533.1\|WP_043192686.1\|4271006_4271333_+\|DUF1820-family-protein	gnl\|CDD\|370154	pfam08850, DUF1820, Domain of unknown function (DUF1820). This family includes small functionally uncharacterized proteins around 100 amino acids in length.	7.47301e-59
NZ_CP009533.1\|WP_043192701.1\|4288050_4289127_+\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP009533.1\|WP_162473373.1\|4279406_4279973_+\|pseudouridine-synthase	gnl\|CDD\|211334	cd02566, PseudoU_synth_RluE, Pseudouridine synthase, Escherichia coli RluE. This group is comprised of bacterial proteins similar to E. coli RluE. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. Escherichia coli RluE makes psi2457 in 23S RNA. psi2457 is not universally conserved.	5.94196e-93
NZ_CP009533.1\|WP_043192690.1\|4274189_4274987_-\|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	2.10236e-121
NZ_CP009533.1\|WP_043192694.1\|4280097_4280577_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.87224e-48
NZ_CP009533.1\|WP_043192699.1\|4284351_4286874_+\|ATP-dependent-helicase-HrpB	gnl\|CDD\|273901	TIGR01970, ATP-dependent_RNA_helicase_HrpB, ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP009533.1\|WP_043192698.1\|4283835_4284273_+\|DedA-family-protein	gnl\|CDD\|224159	COG1238, COG1238, Predicted membrane protein [Function unknown].	1.32232e-39
NZ_CP009533.1\|WP_043192689.1\|4273528_4274155_-\|thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	4.86286e-77
NZ_CP009533.1\|WP_043192687.1\|4271357_4271912_-\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	8.1648e-20
NZ_CP009533.1\|WP_043192691.1\|4275311_4277738_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.88101e-64

>NZ_CP009533.1|WP_162473373.1|4279406_4279973_+|pseudouridine-synthase
MAKAPPAQPRLLLFNKPFDVLTQFSDGEGRATLKDFIDIAGVYPAGRLDRDSEGLLLLTNDGQLQARIADPKHKLAKTYWVQVEGVPDEEQLQRLRSGVELNDGMTLPAEARLLDEPDLWPRDPPVRFRKSVPTHWLELMIKEGRNRQVRRMTAAVGLPTLRLVRVRIGDWSLEGLGQGEWREVPASL
>NZ_CP009533.1|WP_043192692.1|4277818_4279288_+|AMP-nucleosidase
MSNAPDFVVVETAEQAVDRLAELHERATRALSQALKRYLKDRSEPDAAERDLFRYPELRLTYAYGGELPAITRAYAKVNLPGVYSVTVTQPAAFRGYLLDQLRPLMRDFAVTIEVGVSEQNIPYPYVVDQGDELAGSGVTAAALARVFPSTDLSAATDGIADGLYDWATADPLPLALFDAARVDFSLRRLIHYTGSDWKHVQPWILLTNYHRYVDQFVTHGLEQLRNDPRFVRLVMPGNVVIEKSMDNGEAQALVASVVWHRYQMPAYHLIAEDGDGVTLVNIGVGPSNAKNITDHLAVLRPHCWLMIGHCGGLRQSQTIGDYVLAHAYMRQDGILDRVLPPNIPIPALAEVQLALQEAAAQVTGERGDDLKKRLRTGTVLTYDDRNWELRWAQERPLINLSRAVAVDMESGTIAAQGYRLRVPYGTLLCVSDKPLHSEIKLPGSANAFYNRAVSQHLNIGITALNLLRNQLNALHSRKLRSFDEPPFR
>NZ_CP009533.1|WP_043192691.1|4275311_4277738_+|hybrid-sensor-histidine-kinase/response-regulator
MRYLLILMLALLPMLAGAVDFDETTRSLALGRTMQVYEDVSGQATIEQITTELAPAFHQHHDEVLNAGYSKSVFWLRIDLRYVPRTDRARHSWLLELAYPPMDHLELYLADAAGQYRLAQRTGDALPYASRQIKQNNYLFDIPFQPDEAKTVYLRLHSQGSVQAPVSLWSANAYLEAQPSRLYVLGLIYGVLLGMLVYNLFIFLSVRDRSYLYYIFYIASFGLYQVSVNGAGVEYFWPDNPWWANAATPFFIGAAGFFGCQFSRSFLQTASHSRWMDRLLIGLMAYGGVVMVLSLSTSYALALRLATLLALCFTVVIFTAGILAWWRGMRLARYFIIAWTAFLLGGIVNTLMVLGHLPNVFITMYASQLGSALEVGLLSLALADRINVLRDKQAQTLKQAGLKLEQANLELAASNRLKDEFLATVTHELRTPMNGVIGSLELMQTVPMGLELTQYQHTAAGSARNMMRMVDDILILTELQAGRLYPRNEPFSLQALLDSLQMQLSGQAHDKGLAFAVERAAGLPDRLQGDSKKLALCLGCLIDNGIKFTREGSVKVRVSGGESVDGRLQITFKVSDSGIGFSHRDEETLYQRFYQLDGSITREYGGLGIGLAICRQLAELVGGQLHHQSEPGRGSCFELSVRLGVVEAHPGQASSTRVGTFGTQRGAHECTLLLVDDNSVDQLLIRGMLLKLGYRVRTAEDGPGALALLARERFDAVLMECSLPTQSALHTTGLLRSLPGCEGLPVLAITDLGQPGVRERCLAAGVSVCLARPVRFEELQAVLHGCILAQPRHLSAAVAHATSGAAPA
>NZ_CP009533.1|WP_043192690.1|4274189_4274987_-|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase
MNIYSSRPVVLCLSGHDPSGGAGLQADIEALLAQGCHAAPTVTALTVQNTVNVSDFRVLDREWILAQANAVLSDSPVAAVKLGMLGSVDMVATVVELLSAHPHLPMVCDPVLRAGGGGSLGKDEVGYAMRERLLPLATIATPNLPEARILADLPDGSADECAEKLLPFCKHLLITGGHGDEHEVHNRLYSRDGSRRTFTCQRLPGSYHGSGCTLASALAGRLALGEGLESAVQSALDYTWRTLRDAEQLGQGQFVPRRLPLDFCS
>NZ_CP009533.1|WP_043192689.1|4273528_4274155_-|thiamine-phosphate-synthase
MKLRGVYAITDSQLLAGKFLKYVQAALDGGITLLQYRDKSNDEARRLREAEKLRQLCEPYKAHLIINDDAELAARLNVGVHLGQTDGPLTPARALLGRKAIIGSTCHASLDLARQAAREGASYVAFGRFFASQTKPGASPASIELLSQARAELKLPIAVIGGITLDNAAPLVAQGADLLAVVHALFGADTAQEVTRRARALNALFETA
>NZ_CP009533.1|WP_043192688.1|4272227_4273511_-|glutamate-1-semialdehyde-2,1-aminomutase
MSRSEMLFANAQKHIPGGVNSPVRAFKSVGGTPLFFKHAAGAYVTDEDDKRYVDYVGSWGPMILGHSHPDVLDAVRKQLEHGLSYGAPTEMETQMADLVCAIVPSMEMVRMVSSGTEATMSAIRLARGFTGRDSIIKFEGCYHGHSDSLLVKAGSGALTLGVPSSPGVPAAFAKHTLTLPFNDIAAVEQMLAEVADEVACIIVEPVAGNMNCVPPAPGFLEGLRRLCDQYGVVLIFDEVMTGFRVALGGAQAYYGVTPDLSTFGKIIGGGMPVGCFGGKREIMSHIAPLGPVYQAGTLSGNPLAMAAGLTTLNLISRPGFHDELSDYTTRLLDGLQQRADAAGIPFVTTQAGGMFGLYFSGADDIVTFEDVMSSDADRFKRFFHLMLDGGVYLAPSAFEAGFTSIAHGDAELKITLDAAEKAFAALK
>NZ_CP009533.1|WP_043192687.1|4271357_4271912_-|sel1-repeat-family-protein
MNRTGRALALGCLLLLQPLMATAGGNSLLIPAVGRCTLNTSAQALPAALAACQQAAKDGDAQAQFELGQFYYDGTRTERDLNQALSYFEQASLQGHAEAQYHLGTMFFKGEGVAANNIQAYIVLKMAAVNGAEDALDVADEVSRQMRREDLEVATQVLGQIFRKYLLELQTADGGSRSPFAPLP
>NZ_CP009533.1|WP_043192686.1|4271006_4271333_+|DUF1820-family-protein
MTKREAPIYKVIFLNQGQVFEMYAKQIYQSDLWGFLEVEEFVFGERTTVVVDPSEEKLKAQFEGVTRSFVPMHSIVRIDEVERLGTPKISEARMTGNVMPFPMPMPDK
>NZ_CP009533.1|WP_043192685.1|4269544_4270873_-|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTARAEDADVILLNTCSIRERAQDRVYSQLGRWRELKLAKPEMVIAVGGCVASQEGEAIRDRAPYVDVVFGPQTLHRLPEMIDAARITRLPQVDISFPEIEKFDHLPEPRIDGPTAYVSVMEGCSKYCTFCVVPYTRGEEVSRPFDDVLAEVMHLADNGVREVTLLGQNVNGYRGQTHDGRLADLAELIRVVAQIDGIERIRYTTSHPLEFSDSLILAHAEVPQLVKHLHLPVQSGSDRVLAAMKRGHTVLEYKSKLRKLKAAVPDICISSDFIIGFPGETEKDFEQTMKLVADVGMDFSYSFIYSQRPGTPAADLADDTPEAVKKQRLDALQHRLNQQGFEISRQMVGTTQRILVTDYSRKDPGQLQGRTENNRIVNFTCSDARLIGQFVDIHIAEARPHSLRGELLA
>NZ_CP009533.1|WP_043192684.1|4268283_4269291_-|PhoH-family-protein
MNAPIEPHRFLLEPFEARRFANLCGQFDEHLRLIEQRLEIEIRNRGNQFELIGDAQHTRSAENLLRRLYRETKATELSPDTVHLFLQESAVQELDDPASGEVPVALRTRKGMIKPRGLNQQRYVKEILSNDINFGIGPAGTGKTYLAVAAAVDALEREQVRRILLVRPAVEAGEKLGFLPGDLAQKIDPYLRPLYDALYEMLGFEHVAKLIEKQVIEIAPLAYMRGRTLNNSFIILDESQNTTVEQMKMFLTRIGFGSTAVITGDITQVDLPKGTKSGLNQVIEVLKGVPGISFTHFMPKDVVRHPLVQRIVEAYERFDAQPTTVNEAGDKRRDA
>NZ_CP009533.1|WP_043192694.1|4280097_4280577_-|Lrp/AsnC-family-transcriptional-regulator
MSKLDRYDLSILAELQRDARISNQELAERIGLSPSPCSRRVKQLEDDGYISRQVALLDRKKLGLSLTAYVLIGMDRHTPERFETFEAAIRGLPQVLECSLVTGMDADYQLKVVVPDMDHYQKLLLGHLTRIEGVTSVRSSFVLNQVMASTELPLTHLRS
>NZ_CP009533.1|WP_043192695.1|4281051_4282062_+|hypothetical-protein
MKSPLWRLAGVAALCLAVGAPAYAEGPQDQLRGSSNGGQRGPGGGNAGPGQQPGGGQYRPQPGGNQGQWQGRPVQGNQGNQGQWQGRPGAGSQNQWQSNRPEQGRPEGGQQDNRPPIIGKPDAVRQTQAPLRGSYPDLRRDNDRRWEGGRDRWPGEHGGGWGPGPQYRPGQVIDRFPGQNYRVPYRGQDYYYSGGYWYRPQGPRYVVIEPPRGVRVRVLPDYAQRMWIGSSVFFVAAGTYYQWVDNTQEYVVVNPPVNASIPQPAPTLTNYDVAAYPAQGQSPQQIAQDQYECKRWAVEQSRFDPASATYAPSPEVVSVYRQSLANCFASRGYTVN
>NZ_CP009533.1|WP_043192696.1|4282254_4283124_-|cation-diffusion-facilitator-family-transporter
MPTSKEHARLLRLATRASLAVASILIVAKAVAWWLSGSVSLLAGLTDSVLDGAASFLNLLAVHYALRPADDDHRYGHGKAEALAGMAQALFIGSSAVLIGYQAWKQAQDPQPLGAAGVGIAVMILSLALTVALLALQYKVIRETGSTAVRADSLHYRSDLLLNGSILVALVLASYGWPQLDAFFGLGIALYILWSAVHIARESTAILMDQELPLDVSEQMLALACNVPGVLGAHDLRTRMSGNHWFVQLHLELPGQLSLSQAHGICEDVEAAIESQYPRAEVLVHADPV
>NZ_CP009533.1|WP_043192697.1|4283132_4283552_-|hypothetical-protein
MRIPQRLIGGAVAAALVTQLTACGTLFWPDRRGQIEGRIDPVVAALDAIGILFYVIPGLIAFGVDFATGAIYLNDGKTAQVSPEKLQPAVGRDGKVDNLKLQAILESELGRSLPLDDPRLIQHKGSVEQLAMYGLKPAA
>NZ_CP009533.1|WP_043192698.1|4283835_4284273_+|DedA-family-protein
MFELTSYLGLFLAAFGAATLLPMQSEAVLVGMLLSDRYVISTLLAVAIVGNVLGSVLNWVLGRCVERFRHKRWFPVSEAKLAKAQQSYLRYGHWSLLLSWVPIIGDPLTVVAGVMREPFWRFLLIVTLAKGMRYLVLAAVALGWT
>NZ_CP009533.1|WP_043192699.1|4284351_4286874_+|ATP-dependent-helicase-HrpB
MTSLPIDAALPALLKALHDRNEAVLQAPPGAGKTTRVPLALLDQPWLAGQTIVMLEPRRLAARAAAERMAKEVGEAVGETVGYRIRLESKIGPRTQIEVVTEGILARRLQDDPALDGVGVVIFDEYHLRNLDSDLALALCLSARELLRDEPPLKLLLMSATLEGARLSKVLNDAPVVTSEGRMYPVSTVWGNPYQPGERIDARVTDTCLAAINEQSGSVLVFLPGQAEIRRVAEDLKEQLSSRPEVIVCPLYGDLDLNAQRAAIDPAPKGSRKIVLATNIAETSLTIEGVRVVVDSGLERVPKFDPRSGMTRLDTQRISKASATQRAGRAGRLEPGICYRLWSESQHEQMAGYSTPEILQADLAALALQLARWGMKPEEMTWLDQPPSAPFGQARDLLKRLGALDNAGQLTAHGSAMSVLPAHPRIAHMLIKGNAMGLDDLACNIAALLGEKDILRGAGADLHTRLSALSGEQHARRSGGSLQRVKQSARQYRSLLRGKPSSPVSEPDHPRWVGCLLAFAYPDRIGLQRRASVSEYRLSNGRAAVFSEPDALTKHEWLVVADLGSRQGQREERIYLASDLDPALFDDELADLVRSVDEVDWDEREGVLKAERQLKVGQLILSTKPLPSLDEQTRSLALVNLVRRKGIELLPWNPELRQWQARVDLLRQLDIQNGQAESKWPDLSDTNLLDSLEEWLAPYLSKVTRLSHFSQLDLGSIVRNLLLWPLPQELEAQAPQTILVPSGSNIRIDYSQHPPILAVRLQELFGLAETPRIAQGKQPLILHLLSPARRPVQVTQDLANFWRSTYLEVKKDLKGRYPKHYWPEDPLVAEATARAKPRKP
>NZ_CP009533.1|WP_043192700.1|4287042_4287906_+|LysR-family-transcriptional-regulator
MLSAELKAFYTVARLGSVTQAAKKLGLSQPTVTTQIRQLESRYSVELFYRGGRRLTVSDDGARLLPKVKILLQQEADIEFHLRNCGEARGALRIGATAPYYILDLVKSFRERLPQIEVSVEIGNSQDVLEALEEYRVDLAASSQLVSDPRLTHLVLGTDPLVLAVHKQHPLAQHDCVPPSALAGQCLLMREYGSTTRTLTEEFLSAHQISPGMQLEIGSRESIREAVLRNIGVSMIACQEVPVNPDLRVIAIEGAPQIAEYLYCLKDRRQARLPAAFLEVARDSIAR
>NZ_CP009533.1|WP_043192701.1|4288050_4289127_+|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MLRSTPTKQASPGVRVQVAGMHKSFGAFKALDDVSLEISPGELVCLLGPSGCGKTTLLRCIAGLERQNHGAIFMGSRDVSILAPQARDYGIVFQSYALFPNLSVEQNIGYGLAGSARDIVRRRVADMLDLVGLTGSEKKFPGQLSGGQQQRVALARALAPAPSLLLLDEPMSALDAQVREHLCTELRTLQQRLGITTLMVTHNQEEAMLMADRIAVMNEGRIEQYATPQSIYENPETPFVANFVGQGNWLSFEANGNSHAQVGALQLRLADTVPNRASGRLFCRPESICVNPVQSEENLFAAQMREVTFLGNRCRMSFEFDNLPGQPLTAEISARHLPSLGTAHIKVALPPHSLQVFT
>NZ_CP009533.1|WP_052393478.1|4289126_4290851_+|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MRTSSLSISGVNRVRNVSRAEWGDRLFVIGGKVLLLISLAIALLLPLLAIFWRGFSEDAGQGGGLAAARDLLSSDNFHWLLGNSLRVSFSVAFIVVPLAYLFAYALQRTLIPAKGLWRGISLLPLLAPSMLPAIALIYLFGNQGLLRSLLTDNIYGFWGIVIGEVIYTFPHALMILLSALSLTDARLFDAASSMGASPWRSFHSITWPATRQAVFAAFCLVFTLTITDFGVPVVVGGDYQVLAIEAYKAVVGQQQFGRGALIGMVLLVPALLSFGVDAWLRRRQSASMSGRAQIFQPEPSKWRDGCYLLVVMLICACLLAVLGMAVFSSLVKFWPYNLSLSLKHYLFNETAGGGWLAYRNSLVLATCSAVIGSILIFTGAYLMEKTRGQTGLNLALRMLTFIPMAVPGLVLGLGYVFFFNLPENPLHSLYGSMALLVICTVAHYLTTAHMTATTALRQLDSEFEAAALSLKAPLYRHYLRVTLPICLPALLDIIRYLFVSAMTTVSAAIFLYSPDSILAAVAVLNMDDAGNVGGAAAMSTLILFTSAGVSLLLAWVSRGLLRRSQAWRQTAPSH
>NZ_CP009533.1|WP_043192702.1|4290866_4291694_+|phosphonoacetaldehyde-hydrolase
MHYQFPTCLQAAILDWAGTVVDFGSFAPTRIFVEAFATFDIELSLDEARGPMGMGKWEHIRTLCDQPDIAARYKRRFGRLPTDADVTAIYEQFMPLQIANVGMHSALIPGALDAIEQMRQAGLKIGTTSGYPKQVMDHVVALAAVAGYQPDHVVAADELPTGRPGPAQALANVIALSISDVAACVKVDDTLPGILEGRSAGMWTVGLRFSGNFLGLDYPAYQALTLPQLEEHRLRIDALFAPARPHYLIDTIADLPELIHQINDCMARGDNPASR

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Crispr_ID: NZ_CP009533_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009533_13

4313722-4313914

Orphan

Consensus_repeat	Method
CTGTGGGAGCGGGTCTCTGCCCGCGAAGAGGCCGGCACTGACACCCC	PILER-CR

2 spacers

DEDDh

The CRISPR arrays of NZ_CP009533_13

>merge|NZ_CP009533|13|4313722-4313914|PILER-CR
CTGTGGGAGCGGGTCTCTGCCCGCGAAGAAGCCGGCACTGACACCCCTCCTTACAGGACACCACAAATTGTGGGAGCGGGGCGGGCGGCGAGCCCTCTGCCCGCGAAGAGGCCGGCATAGTCACCCCCCTCACACATGGCACAACCCTGTGGGAGCGGGTCTCTGCCCGCGAAGAGGCCGGCACTGACAACCC

>NZ_CP009533|13|1|4313722-4313914|PILER-CR
CTGTGGGAGCGGGTCTCTGCCCGCGAAGAAGCCGGCACTGACACCCC	TCCTTACAGGACACCACAAATTGTGGGAGCGGGGCGGGCGGCGAGCC
CTCTGCCCGCGAAGAGGCCGGCATAGTCACCCCCCTCACACATGGCA	CAACCCTGTGGGAGCGGGT
CTCTGCCCGCGAAGAGGCCGGCACTGACAACCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009533.1\|WP_043192717.1\|4304655_4306170_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226364
NZ_CP009533.1\|WP_043192741.1\|4317573_4318800_-\|TIGR03862-family-flavoprotein	unknown	unknown	gnl\|CDD\|274820
NZ_CP009533.1\|WP_043192724.1\|4310305_4310689_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP009533.1\|WP_043192748.1\|4323572_4324379_-\|putative-hydro-lyase	unknown	unknown	gnl\|CDD\|180100
NZ_CP009533.1\|WP_043192722.1\|4308472_4309555_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP009533.1\|WP_043192743.1\|4319138_4320053_-\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|377175
NZ_CP009533.1\|WP_043192726.1\|4311488_4312004_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP009533.1\|WP_043192746.1\|4321943_4323563_-\|5-oxoprolinase/urea-amidolyase-family-protein	unknown	unknown	gnl\|CDD\|214821
NZ_CP009533.1\|WP_043192725.1\|4310709_4311492_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP009533.1\|WP_043192744.1\|4320207_4321947_-\|ATP-grasp-domain-containing-protein	unknown	unknown	gnl\|CDD\|227111
NZ_CP009533.1\|WP_043192749.1\|4324375_4325146_-\|LamB/YcsF-family-protein	unknown	unknown	gnl\|CDD\|235446
NZ_CP009533.1\|WP_043192734.1\|4313982_4314462_+\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350235
NZ_CP009533.1\|WP_043192739.1\|4316115_4317450_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|236722
NZ_CP009533.1\|WP_084139846.1\|4307470_4308355_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|274678
NZ_CP009533.1\|WP_043192738.1\|4315176_4316064_+\|drug/metabolite-exporter-YedA	unknown	unknown	gnl\|CDD\|183067
NZ_CP009533.1\|WP_043192723.1\|4309554_4310295_+\|pyrimidine-utilization-protein-B	unknown	unknown	gnl\|CDD\|163356
NZ_CP009533.1\|WP_043192731.1\|4312892_4313609_+\|DUF2076-domain-containing-protein	unknown	unknown	gnl\|CDD\|370723
NZ_CP009533.1\|WP_043192719.1\|4306166_4307258_-\|BMP-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380618
NZ_CP009533.1\|WP_043192736.1\|4314474_4315086_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
NZ_CP009533.1\|WP_043192728.1\|4312017_4312671_-\|membrane-protein	unknown	unknown	gnl\|CDD\|235080

Protein	Function_ID	Function_description	E-value
NZ_CP009533.1\|WP_043192717.1\|4304655_4306170_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226364	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only].	0
NZ_CP009533.1\|WP_043192741.1\|4317573_4318800_-\|TIGR03862-family-flavoprotein	gnl\|CDD\|274820	TIGR03862, flavo_PP4765, uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.	1.5418e-167
NZ_CP009533.1\|WP_043192724.1\|4310305_4310689_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	1.20188e-85
NZ_CP009533.1\|WP_043192748.1\|4323572_4324379_-\|putative-hydro-lyase	gnl\|CDD\|180100	PRK05463, PRK05463, putative hydro-lyase.	2.30495e-175
NZ_CP009533.1\|WP_043192722.1\|4308472_4309555_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP009533.1\|WP_043192743.1\|4319138_4320053_-\|lysine-exporter-LysO-family-protein	gnl\|CDD\|377175	pfam03956, Lys_export, Lysine exporter LysO. Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. This family includes lysine exporter LysO (YbjE) from E. coli.	1.11941e-39
NZ_CP009533.1\|WP_043192726.1\|4311488_4312004_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	5.65893e-89
NZ_CP009533.1\|WP_043192746.1\|4321943_4323563_-\|5-oxoprolinase/urea-amidolyase-family-protein	gnl\|CDD\|214821	smart00797, AHS2, Allophanate hydrolase subunit 2. This domain represents subunit 2 of allophanate hydrolase (AHS2).	6.24248e-109
NZ_CP009533.1\|WP_043192725.1\|4310709_4311492_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	1.80136e-129
NZ_CP009533.1\|WP_043192744.1\|4320207_4321947_-\|ATP-grasp-domain-containing-protein	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NZ_CP009533.1\|WP_043192749.1\|4324375_4325146_-\|LamB/YcsF-family-protein	gnl\|CDD\|235446	PRK05406, PRK05406, 5-oxoprolinase subunit PxpA.	1.78533e-149
NZ_CP009533.1\|WP_043192734.1\|4313982_4314462_+\|NYN-domain-containing-protein	gnl\|CDD\|350235	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. This subfamily contains Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. This subfamily belongs to the LabA-like domain family which includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Also included in the LabA-like domain family are human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB , which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.15079e-46
NZ_CP009533.1\|WP_043192739.1\|4316115_4317450_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|236722	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.	1.77085e-171
NZ_CP009533.1\|WP_084139846.1\|4307470_4308355_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|274678	TIGR03613, RutR, pyrimidine utilization regulatory protein R. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the TetR family of transcriptional regulators defined by the N-teminal model pfam00440 and the C-terminal model pfam08362 (YcdC-like protein, C-terminal region).	2.26822e-113
NZ_CP009533.1\|WP_043192738.1\|4315176_4316064_+\|drug/metabolite-exporter-YedA	gnl\|CDD\|183067	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional.	4.43735e-152
NZ_CP009533.1\|WP_043192723.1\|4309554_4310295_+\|pyrimidine-utilization-protein-B	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	7.72521e-150
NZ_CP009533.1\|WP_043192731.1\|4312892_4313609_+\|DUF2076-domain-containing-protein	gnl\|CDD\|370723	pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076). This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins.	4.53138e-54
NZ_CP009533.1\|WP_043192719.1\|4306166_4307258_-\|BMP-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380618	cd19963, PBP1_BMP-like, periplasmic binding component of a basic membrane lipoprotein (BMP) from Brucella abortus and its close homologs in other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type 1 periplasmic sugar-binding protein-like fold.	7.60702e-132
NZ_CP009533.1\|WP_043192736.1\|4314474_4315086_+\|3'-5'-exonuclease	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	5.61098e-47
NZ_CP009533.1\|WP_043192728.1\|4312017_4312671_-\|membrane-protein	gnl\|CDD\|235080	PRK02868, PRK02868, hypothetical protein; Provisional.	8.91042e-05

>NZ_CP009533.1|WP_043192731.1|4312892_4313609_+|DUF2076-domain-containing-protein
MNTDEQSLIDGLFTRLQQAEKEGSARDVQADERIKGHVSAQPAAPYYMAQAILVQEAAIKRLSEQNQQLQTELQQARSQPAPAQQGGGGFLSSIFGGGNRDAQQPARALQPQGNGWREPARQAPAYQPPPQQNYAAPGAQAPAGGGFMRGALQTAAGVAGGVMLAQGISSLFHHDNPQEIVEVIKEEPAQASDSGGWNDSGDAQQVSNDSWNDQGGLADAGYDSSGDSGFFSDDDDFV
>NZ_CP009533.1|WP_043192728.1|4312017_4312671_-|membrane-protein
MNPLIVLRDSFYFFRINLWAIIRLCLPLVVCETLVRELVTQASSADVTVMYDVAVGLLFYPLYTAALILFLDARTDGYEPQGRHLLSQALHLWPRFALMAAISTLLIMFGMWLFVLPGLYLMIKLSFAEYLLVLRNLTPLQAMRESFDMTKGKFWPILFTLLSIMIPLWLLDGLSAMAWSDAQPTPVRLLVDSVNSFLQLLPTVVLFRLFMLMSKPD
>NZ_CP009533.1|WP_043192726.1|4311488_4312004_+|pyrimidine-utilization-flavin-reductase-protein-F
MNVPHSIPVERQAFRDAMAGLAAAVNVITTDGPHGRAGFTATAVCSVTDQPPTLLVCINRGASVYESFTGNGMVCVNTLGNGQQALSNAFGGKTAQEERFATGHWSQGVTGAPILEGAKLSFDCRITSSTSVGTHDILICEVLDIRQQNEADVLVYFARRYHELAGTQASV
>NZ_CP009533.1|WP_043192725.1|4310709_4311492_+|pyrimidine-utilization-protein-D
MYHALHGRLDADAPTLVLSSGLGGSAGFWAGDLAALGEHFRVVTYDHAGTGRSPAQLPEGYSIEHMAEELLGLLDELGIERCHFMGHALGGLVGLALAALQPQRLSSLVLINAWSSPNPHSARCFAVRKNLLRNSGAEAYVQAQALFLYPADWIASNGARLAADEAHALAHFPSHDNLLRRINALETFDIESRLAGIDTPALVIANRDDMLVPWQRSRHLAEHLPNAKLVVLEYGGHASSVSDPQPFHHAVLDYFQGLSL
>NZ_CP009533.1|WP_043192724.1|4310305_4310689_+|pyrimidine-utilization-protein-C
MSKRSIIPAGTGKPLAPFVPGSMADGVLYVSGTLPFDKDNNVVHVGDATAQTRHVLEIIKGVVEAAGGTLDDVTFNMIMIRDWADYAQVNEVYAEYFAGEKPARYCIQCGLVKPDALIEIASIAHIG
>NZ_CP009533.1|WP_043192723.1|4309554_4310295_+|pyrimidine-utilization-protein-B
MNLPVNVAGVSLPQDAHPARELPARPEALRMKASETALVVVDMQNAYATLGGYLDLAGFDVSSTGPVIAAIEKALVAARAAGISVIFLQNGWDADYVEAGGPGSPNWHKSNALKTMRKRPELQGQLLAKGGWDYALVDQLKPQPGDIVVPKTRYSAFFNSTFDSTLRARGIRNLVFTGIATNVCVESTLRDGFHLEYFGVVLADATHQAGPAFAQQAALFNIETFFGWVSSVDDFCTTFAPVGAVS
>NZ_CP009533.1|WP_043192722.1|4308472_4309555_+|pyrimidine-utilization-protein-A
MDIGVFTPIGNNGWLISENAPQYLPTFELNKQIVQKAEHYGFDFALSMIKLRGFGGKTEFWEHNMESFTLMAGLAAVTSKIQLFATVATLTIPPAITARMAATIDSISNGRFGVNLVTGWQKPEYEQMGLWPGDEFFGTRYQYLGEYAQVLRDLWSTGRSDFKGEHFTMQDCRVSPRPQADMKLICAGQSEAGMAFSAQYADYNFCFGKGVNTPTAFAPTAQALLEANKKTGRHVTSCVLFMIIAADTDEAARARWEHIKAGADQEAIAWLGEKGSADKGASSNLRQMADPTSAVNINMGTLVGSWASVARMLDEVASVPGTQGVMLTFDDFVQGIEDFGRKIQPLMSSRQHVMPTLEAV
>NZ_CP009533.1|WP_084139846.1|4307470_4308355_-|HTH-type-transcriptional-regulator-RutR
MHDLSDQLVRSRALGLCDFPRRGAKRCTTSPCLYRQRTFARYHGLLPPAAGPSRVKEQPPADKPRAKRARNVKPKPVVKATREPSAAALKRRLQLMESKRTAILGAALDVFSRYGLHGSSLDQVATRADVSKTNLLYYFSSKDDLYLSVLRQLLEVWLSPLQYFTADKNPVEAIGAYIKAKLELSRDHAAESRLFCMEIMQGAPLMLSELQQPLRETVDTKVAVIEHWIATGQLAPVNPHHFIFSLWATTQHYADFRTQVEAVTGKTLHDPQFFEEVLVGLRGLILDGVRPRPA
>NZ_CP009533.1|WP_043192719.1|4306166_4307258_-|BMP-family-ABC-transporter-substrate-binding-protein
MIKTLLPGMLLAASACGTGTAAYAEGLTLKGPAKIAMVYISPRNDGGWTQAFDEARIKLEKSLDQKIQYVESVPENAAAITPVVDRLIARGANIIIGTAFGYSDTFLALAKKYPDVAFLNGSGTTNAANLESFYGRTYESQYLCGMAAGATSKSGKLGFVAANPFGQVNWTINAYELGAQQINPAATVTVIYTGAWNDPVKERAATMALIDNGVDVIGQHVDSPTPQIVAQERGIHGTGHHRDLSEFAPKATVCSSMWVWDRFLTPEVKKIMAGNWVPQANGALLSMQQGGTDISLTQDAVISPENRAKIDAARAELLAGTKTLYTGPMADRDGQQRLAPGQVMSDPELWKMDWFVKGVMTQQ
>NZ_CP009533.1|WP_043192717.1|4304655_4306170_-|ABC-transporter-ATP-binding-protein
MSQANALQLTGISKSFDGFKALSDADFSARWGEVHALLGENGAGKSSLMNIAAGLYAPETGSVLIDDNSVRLHSPKDASRYRIGMVHQHFKLVRPFTVAQNILLGLPEQPGEGSYRKRLKALEQTIASKALELGFVLDPRQVVETLSVAEQQRVEILKVLLAGARILILDEPTAVLTDQEAERLLSTVQSFARQGATVVLVTHKMADVKRYADRVTVMRGGRTIKTLDPQGVSVEELVRLTVGESAALSPTLPAAPGEALLRVSNLTSVAGTGGLKGVDMTLHAGQIYGIAGVGGNGQGELANALMGLEQPTEGGIHLASFGDLRKASAAQRRTLRIAAIPADRYGAALAGSLSVAENFAIGQLHDGRYGSFLRLRGQRLLEDAAQAVADFDVQGVRSLQQKAALLSGGNAQKLVIAREFSRNPRLILVHSPSRGLDVRATQAVHARLRAARDAGAAVLVISEDLDEVLALADRIGVMNGGRIVAEFDCPADRQAIGKAMVSHD
>NZ_CP009533.1|WP_043192734.1|4313982_4314462_+|NYN-domain-containing-protein
MKKIAVFADVQNLYYTVRQAYGCHFNYAALWADIGQRGQIVEAYAYAIDRGDSKQQQFQQILRNLGFTVKLKPYIQRSDGSAKGDWDVGITIDIMDAADHVDEIVLASGDGDFDLLLDRIIGKHGVEAVAYGVPGLTANSLIRAATRYVPIEGALLLKN
>NZ_CP009533.1|WP_043192736.1|4314474_4315086_+|3'-5'-exonuclease
MERIAVIDFETTGISPNMGCRATEIAVVMLERGEIVGRYQSLMNAGLPVPGFVASLTGITTAMVRKAPPAAEVMAEVAEFVGSTPLLAHNASFDQKFWDHELSLLRRERVQSFACSMLMARRLFPGAPNHKLGTLTQWAKLPHTGQAHRAMADAEMAANLTQHLALELRERHGLAEVSHGLFCKLQKVPMAKMREALQKHRLG
>NZ_CP009533.1|WP_043192738.1|4315176_4316064_+|drug/metabolite-exporter-YedA
MPAQSRFPLLLIGAFLALYFVWGSTYLFIRIGVESWPPLLMAGVRFLIAGTILYAFLRLRGAPNPTWPQWRAAGCVGILLLSCGNGGVTVAEHAGVSSGVAALAVATVPLFTLFFGLFRGQRNTRLEWAGIVLGLVGIGLLNLGSNLQASPLGAALLIFAAAAWAFGSVWSRSLPLPQGAMAAAAEMLIGGAVLLLGSLISGERMQQWPTPAGWGALAYLVCFGSILAFSAYMYLLKHVRPAAATSYAYVNPAVAVLLGILFAGEHIGVEECVAMAVIIGAVVLIGVPQWRKAKA
>NZ_CP009533.1|WP_043192739.1|4316115_4317450_+|DEAD/DEAH-box-helicase
MTFATLGLIEPLQRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQLLAMEGPKVASNSVRALVLCPTRELAEQVHANIVEYGEHLPLSTYAVYGGVSINPQMMKLRKGVDLLVATPGRLLDLYRQNAVKFSQLQTLVLDEADRMLDLGFSEELRDIYAALPKKRQTLLFSATFSDSIRLLAGQMLNDPLSIEVSPRNVAASSVQQWIVPVDKKRKAELFCHLLKKQRWKQVLVFAKTRNGVDALVEKLQGLGINADGIHGDKPQATRQRALDRFKASEVQILVATDVAARGLDIDDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGEAISLVCADEVQLLSAIETLTRQTLKRVDEPDFVPDHRVPDTDASGQVVKKPKKPKKPKVSGSKKNLGKWVDSGDSPVDATPVVKPVRKVPVFNTGPRKRKP
>NZ_CP009533.1|WP_043192741.1|4317573_4318800_-|TIGR03862-family-flavoprotein
MHSSSTRVAVIGGGPAGLMAAEVLSLAGVAVDVYDGMPSVGRKFLLAGVGGMNITHSEPQPAFVARYAERAQAVGEWLAPFDGPRLREWIHGLGIQTFVGTSGRVFPTDMKAAPLLRAWLKRLREAGVVIHTRHRWLGWNDDGSLRISGPEGEWAVQPAATVLALGGASWARLGSDGAWVPWLQGRGVPIKPLQPSNCGFEVPGWSAVLQEKFAGAPLKNVALGLAGEPLRTGEFVLTETGVEGSLVYALSAGIREAINRTGKATVYLDLLPDRPVDKVRAALHKPRGSKSMARHLQGQLGLEGVKAGLLRELTDAPTFADLDALTLAIKALPLTLVRARPLDEAISTAGGVDLQGLDRQLMLKDVPGTFCAGEMLDWEAPTGGYLLTACFASGRRAAHGVLEWLARE
>NZ_CP009533.1|WP_043192743.1|4319138_4320053_-|lysine-exporter-LysO-family-protein
MLSIVASLLPILLALAGGWVLAIFISPELRRRLVKLITPFIWLLLFSIGYEFGNVLGALNSARESALTALVFALLTTAVPWLLLSWGANATVVRPTSDRQGLAGIIPPLKECLIALLALALGVGMYHLWGAADGSGFGWPSTSYFLYVLIVLVGLDLYGVRPDPSWYSLRTLKIPAMVVIGSLLGGLLAAWATGQPLAISLALSSGFGWFTLSGVMVGHHAGEAFGAMALLTDLFREILAIGLLYSLGARRPLQCIAAGGATSLDSTLPIVKQKCPPELLPVALVSGFLLTVIGPLLMVFFLTV
>NZ_CP009533.1|WP_043192744.1|4320207_4321947_-|ATP-grasp-domain-containing-protein
MKKLLIANRGEIAVRIARACRDHGVQCVAVYADADIDALHVRHADEAYGLDGQRPAETYLNIEKLLAVAKRSGADAVHPGYGFLSERADFARAVIEAGLIWVGPNPETIDVLGDKVEARKIAQAVGAPLVAGTPGPVESAEEVLAFAEQHGLPIAIKAAFGGGGRGMKVAWRLDEVTELFASAVREAEAAFGRGECYVEQFLDRPRHIEAQILADQHGQVVVVGTRDCSLQRRNQKLVEEAPAPFISEQQRERIHQAARDICAKAGYVGAGTVEFLLSQDGTLSFLEVNTRLQVEHPVTEETTGVDLVIEQLRIADGLPLSFTETPVPRGHSFEFRINAEDPGKGFLPTPGQIGEFLPPFGPGVRLDSGVVSGSSVPSHFDSMMAKLIVTGATREQAIARARRALAEFHIKGIASVLPFHRAVMDHADFTAPERFAVHTRWIETDFAESITLAPRAEPVADADILRTFVEIDGKRHALGLPAALLRGMSLDAAPAAQAQASAAAEVDAQALLTPVAGNLHTWVVEDGADVSSGQVVAVVEAMKMETSVLAPCAGRVQIGQQAGDYFEAGALIGRIQTDD
>NZ_CP009533.1|WP_043192746.1|4321943_4323563_-|5-oxoprolinase/urea-amidolyase-family-protein
MRFLPVNLDTLLVELDDLEQTLALFDALSAEPIAGVEEIIPAARTLLIQFRPSAITRQALVDQLARRDASQRRAVEQRRVEIPVHYNGEDLDEVAALLQISREEVIGRHTAHDYSVAFCGFAPGFGYLTGGAGFQVPRRKTPRTRIPAGAVALAGEFSGIYPKASPGGWQIIGVTPLQMWDLERAEPALLRPGYKVRFVDAGPLPASGLPAPAVPAAALPPSGAYLKILSPGLHSVLQDTGRIGQTGQGVSRSGALDLGALRAANRAVGNRSDMACVETVLGGLRFTCHGHAVIAVTGAQTPVTLTSASGLQWPVDNYRPIELAPGDTITLGAPSAGLRSYLAIRGGFDVAPVLGSLSTDTLAQVGPPALATGDHLGFTPPTGGTSVSLSEAPAFVLPKTADTVTLDVLMGPRSDWFSADAIERLSSQPWQVTAQSNRVGIRLAGETPLERSNHQELPSEGTAVGAIQVPASGQPVLFLADHPLTGGYPVIAVVANYHLDLAGQIPVNAWIRFNPVAPFEEIDATVPAPSSPADVERLP
>NZ_CP009533.1|WP_043192748.1|4323572_4324379_-|putative-hydro-lyase
MSALERAAKSAIEAARAARADYRGGRVAPSAGIAPGMTQANLIALPRDWAYDFLLYAQRNPKACPILDVTDAGSPHTVLAEGADLRTDLPLYRVWRNGQLVEEVSDARHAWAEHDDMVTFLIGCSFTFETALQEAGIEVRHIADGSNVPMYLSNRACRPAGRLRGDMVVSMRPIRADRVAEACTITARYPSVHGAPVHVGDPALLGIADLARPDFGDAVRIEPGEVPVFWACGVTPQAAVMASGVPFAITHSPGHMFITDVPDSTYHV
>NZ_CP009533.1|WP_043192749.1|4324375_4325146_-|LamB/YcsF-family-protein
MPTIDINSDLGESFGAWSMGDDDAMLDIVTSANVACGFHAGDPAGILRTLKAAAARQVSIGAHVSYPDKVGFGRRNMDVASDELTADVIYQIGALQGLAQAAGTCVSYVKPHGALYNTIAHDRRQALAVIAAIRVVDPGLVLVALAGSSLIELAREEGLTCVAEAFADRAYTPEGTLVSRREPGAVLHDPQLIGQRMLRLVEEGTLEAIDGSITRIQADSICVHGDSPAAVAMARELRRVLEQANMQLQPFAGGRP

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Crispr_ID: NZ_CP009533_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009533_14

4367504-4367625

Orphan

Consensus_repeat	Method
CCCTGTAGCAGCGGCGCAAGCCGCGTCGGCGGTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009533_14

>merge|NZ_CP009533|14|4367504-4367625|CRISPRCasFinder
CCCTGTAGCAGCGGCGCAAGCCGCGTCGGCGGTCCCGCGCAGTATCTGACACAACGCGGTGCAACCAAACGCAAGCTTAACGCACCCCCTGTAGCAGCGGCGCAAGCCGCGTCGGCGATCCC

>NZ_CP009533|14|13|4367504-4367625|CRISPRCasFinder
CCCTGTAGCAGCGGCGCAAGCCGCGTCGGCGGTCCC	GCGCAGTATCTGACACAACGCGGTGCAACCAAACGCAAGCTTAACGCACC
CCCTGTAGCAGCGGCGCAAGCCGCGTCGGCGATCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009533.1\|WP_043192781.1\|4359748_4361116_+\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NZ_CP009533.1\|WP_043192797.1\|4381777_4382395_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|223619
NZ_CP009533.1\|WP_043192795.1\|4380707_4381046_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009533.1\|WP_148308588.1\|4369179_4372638_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|236645
NZ_CP009533.1\|WP_043192787.1\|4366428_4367409_+\|GTPase	unknown	unknown	gnl\|CDD\|183183
NZ_CP009533.1\|WP_043192788.1\|4367697_4368951_-\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234571
NZ_CP009533.1\|WP_043192792.1\|4375471_4377325_-\|DUF4105-domain-containing-protein	unknown	unknown	gnl\|CDD\|379156
NZ_CP009533.1\|WP_043192783.1\|4362609_4363302_+\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|319831
NZ_CP009533.1\|WP_043192779.1\|4356533_4357658_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225370
NZ_CP009533.1\|WP_052393482.1\|4359084_4359537_-\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|234795
NZ_CP009533.1\|WP_043192796.1\|4381147_4381636_+\|TIGR00645-family-protein	unknown	unknown	gnl\|CDD\|179964
NZ_CP009533.1\|WP_043192785.1\|4364020_4366087_+\|carbon-starvation-protein-A	unknown	unknown	gnl\|CDD\|184976
NZ_CP009533.1\|WP_043192790.1\|4373019_4374684_+\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NZ_CP009533.1\|WP_043192791.1\|4374747_4375245_-\|GreA/GreB-family-elongation-factor	unknown	unknown	gnl\|CDD\|180535
NZ_CP009533.1\|WP_043192786.1\|4366105_4366303_+\|YbdD/YjiX-family-protein	unknown	unknown	gnl\|CDD\|225434
NZ_CP009533.1\|WP_043192793.1\|4377392_4377881_-\|DUF3015-domain-containing-protein	unknown	unknown	gnl\|CDD\|378601
NZ_CP009533.1\|WP_043192784.1\|4363479_4363848_-\|PilZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|377796
NZ_CP009533.1\|WP_043192780.1\|4357893_4358670_+\|ferredoxin--NADP-reductase	unknown	unknown	gnl\|CDD\|99792
NZ_CP009533.1\|WP_043192794.1\|4378106_4380548_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379314
NZ_CP009533.1\|WP_043192782.1\|4361267_4362503_+\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|235710

Protein	Function_ID	Function_description	E-value
NZ_CP009533.1\|WP_043192781.1\|4359748_4361116_+\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NZ_CP009533.1\|WP_043192797.1\|4381777_4382395_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|223619	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones].	3.57852e-82
NZ_CP009533.1\|WP_148308588.1\|4369179_4372638_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	1.16801e-130
NZ_CP009533.1\|WP_043192787.1\|4366428_4367409_+\|GTPase	gnl\|CDD\|183183	PRK11537, PRK11537, putative GTP-binding protein YjiA; Provisional.	1.80823e-135
NZ_CP009533.1\|WP_043192788.1\|4367697_4368951_-\|serine-hydroxymethyltransferase	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	0
NZ_CP009533.1\|WP_043192792.1\|4375471_4377325_-\|DUF4105-domain-containing-protein	gnl\|CDD\|379156	pfam13387, DUF4105, Domain of unknown function (DUF4105). This is a family of uncharacterized bacterial proteins. There is a highly conserved histidine residue and a well-conserved NCT motif.	1.58999e-65
NZ_CP009533.1\|WP_043192783.1\|4362609_4363302_+\|HAD-IA-family-hydrolase	gnl\|CDD\|319831	cd07529, HAD_AtGPP-like, subfamily of beta-phosphoglucomutase-like family, similar to Arabidopsis thaliana Gpp1 and Gpp2. This subfamily includes Arabidopsis thaliana AtGpp1 and AtGpp2, and Drosophila GS1-like protein (Dmel\Gs1l) of unknown function. AtGpp1 and AtGpp2 are constitutively expressed in all the Arabidopsis tissues and unaffected under abiotic stress. Overexpression of AtGpp2 in transgenic Arabidopsis plants increases the specific DL-glycerol-3-phosphatase activity and improves the plants tolerance to salt, osmotic and oxidative stress. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.26085e-80
NZ_CP009533.1\|WP_043192779.1\|4356533_4357658_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225370	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].	1.62734e-89
NZ_CP009533.1\|WP_052393482.1\|4359084_4359537_-\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|234795	PRK00567, mscL, large-conductance mechanosensitive channel protein MscL.	3.11282e-75
NZ_CP009533.1\|WP_043192796.1\|4381147_4381636_+\|TIGR00645-family-protein	gnl\|CDD\|179964	PRK05208, PRK05208, hypothetical protein; Provisional.	6.13869e-88
NZ_CP009533.1\|WP_043192785.1\|4364020_4366087_+\|carbon-starvation-protein-A	gnl\|CDD\|184976	PRK15015, PRK15015, carbon starvation protein CstA.	0
NZ_CP009533.1\|WP_043192790.1\|4373019_4374684_+\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NZ_CP009533.1\|WP_043192791.1\|4374747_4375245_-\|GreA/GreB-family-elongation-factor	gnl\|CDD\|180535	PRK06342, PRK06342, transcription elongation factor GreA.	5.24171e-30
NZ_CP009533.1\|WP_043192786.1\|4366105_4366303_+\|YbdD/YjiX-family-protein	gnl\|CDD\|225434	COG2879, COG2879, Uncharacterized small protein [Function unknown].	4.11813e-32
NZ_CP009533.1\|WP_043192793.1\|4377392_4377881_-\|DUF3015-domain-containing-protein	gnl\|CDD\|378601	pfam11220, DUF3015, Protein of unknown function (DUF3015). This bacterial family of proteins has no known function.	1.47626e-67
NZ_CP009533.1\|WP_043192784.1\|4363479_4363848_-\|PilZ-domain-containing-protein	gnl\|CDD\|377796	pfam07238, PilZ, PilZ domain. PilZ is a c-di-GMP binding domain which is found C terminal to pfam07317. Proteins which contain PilZ are known to interact with the flagellar switch-complex proteins FliG and FliM. This interaction results in a reduction of torque generation and induces CCW motor bias. This domain forms a beta barrel structure.	5.20421e-11
NZ_CP009533.1\|WP_043192780.1\|4357893_4358670_+\|ferredoxin--NADP-reductase	gnl\|CDD\|99792	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	4.4141e-120
NZ_CP009533.1\|WP_043192794.1\|4378106_4380548_+\|ATP-binding-protein	gnl\|CDD\|379314	pfam13654, AAA_32, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	0
NZ_CP009533.1\|WP_043192782.1\|4361267_4362503_+\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|235710	PRK06133, PRK06133, glutamate carboxypeptidase; Reviewed.	0

>NZ_CP009533.1|WP_043192787.1|4366428_4367409_+|GTPase
MIVEPTTLPEAAPPIPVTILSGFLGAGKTTLLRHMLKAEHGLKIAVIENEFSDADIDTQLLGDEPVQIMTLANGCVCCTIHTDLTKALYLLLERLDNGQIAFDRLVIECTGLADPAPVAQTFFIDEELRERYILDGILTLVDAANAGIHLAQTIAQAQVGFADRLLLSKTDLVEPSVVEELSERLTRINRRAPIRVVEHGRIDLAELLDVRGFNLNAGLALRPVNQGPSVDRIASLVLRTDKPLDIDRLSSFMNELLEEHGKQLLRYKGVLNIAGEERRLVFQGVLKLYGFDWDTEWAPGEVRESVMVFIADDLPEAKIRTGFDQL
>NZ_CP009533.1|WP_043192786.1|4366105_4366303_+|YbdD/YjiX-family-protein
MFNDLSKLGKYLGQAARLMVGMPDYDNYVEHMQTKHPDKPMMDYEAFFRERQEARYGGKGGPKCC
>NZ_CP009533.1|WP_043192785.1|4364020_4366087_+|carbon-starvation-protein-A
MKNNSSAFRHVPWLIVAIIGACALGVVALRRGEAINALWIVVAAVAIYLVAYRYYSLFIANHVMQLDPRRATPAVLNNDGLDYVPTNKHILFGHHFAAIAGAGPLVGPVLAAQMGYLPGTLWLIAGVVLAGAVQDFMVLFLSTRRNGRSLGDMVREEMGRIPGTIALFGCFLIMIIILAVLALIVVKALAESPWGIFTVMATIPIAMFMGVYMRYIRPGRIGEISIIGVALLLLSIYLGGQVAADPVWAKAFTFTGVQIVWMLIGYGFVAAVLPVWLILAPRDYLSTFLKIGTIIALAIGILVTMPELKMPALTQFTDGTGPVWKGGLFPFLFITIACGAVSGFHALISSGTTPKLLDNETNARYIGYGGMLMESFVAIMAMVAASVIEPGVYFAMNSPAAVVGTDVVAVATAVSSWGFAITPEALQAVAHDIGETTILARAGGAPTLAVGIAQILHSVLPGENTMAFWYHFAILFEALFILTAVDAGTRAGRFMLQDLLGSFVPALKRTESWTANVIATAGCVALWGWLLYQGVIDPLGGINTLWPLFGISNQMLAGIALMLATVVLIKMKRQRYIWVTMLPAVWLLICTTTAGFIKLFDANPAVGFLALANKYSNALAQGQVIAPAKSVEQMQHVIFNAYTNATLTVLFLLVVFSILFFALKVGVAAWGKKERTDKEAPFQPFPNA
>NZ_CP009533.1|WP_043192784.1|4363479_4363848_-|PilZ-domain-containing-protein
MTQTPTERRRFKRIAFDAKTELRQGTERWQVKLLDLSLKGLLIEKPSPWLGDAGKPFNVDVKLGPQEDVVMEVKLAHDDHGQLGFVCTHIGLDSISHLRRLIELNLGDPEELERELGALLEV
>NZ_CP009533.1|WP_043192783.1|4362609_4363302_+|HAD-IA-family-hydrolase
MNTAVPGMGPVKAVIFDMDGLLLNTEGIYTEVTQMIAERYGKVFDWSIKQNTIGLGANDLSTYIVETLGLPLTPAEFMEARAPLMAERFPHAQAMAGAEALVRHLKAHNIPIAVGTSSSRGHFAMKTTLHEEWFALFDTIVTADDPEVGAAKPAPDIFLVAAKRLGVEPKDCLVFEDSPFGVTAAKAAGMFAVAVPDAAMAPERYHHADDRLQSLLGFDPAQWGLPAHLV
>NZ_CP009533.1|WP_043192782.1|4361267_4362503_+|M20/M25/M40-family-metallo-hydrolase
MLVRPSRITAIAAACLFSLSTHAAELPAADLYKQAQAEQPSYLETVKELVSVDTGTGQEKGLATISALLVKRLKELGATVQTTPATPSVGDNIVGTFKGTGSKNFLLMVHYDTVFGPGTAAKRPFRTDQERAYGPGVADAKGGVAMILHALKLLKAQGFDGYGTLTVLFNPDEEMGSAGSKKVIAELAAQHDYVFSYEPPNKDAVTTATNGINGLVLEVKGRSSHAGSAPEEGRNALTELAHQLVQLKDLGDPDKGTTVNWTMAKAGEKRNIIPAIATAEADMRYSDIEETDRVLAQGQRLIRKQLIDETQVSLRLEKGRPPLAKNSGSEQLAGVAQKAYAAIDKSIEPIAMRFGTDAGYAYVPGSDKPAVLETMGVVGAGLHADDEYIELNSIAPRLYLTLSMIRSLSAP
>NZ_CP009533.1|WP_043192781.1|4359748_4361116_+|DNA-repair-protein-RadA
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLVETVIESGAAAPPSGRTGWAGQQAQLKTLAEVSIEEIPRFSTASAELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDKLKVMTETCIETIIATAKVEHPKVMVIDSIQTIFTENLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGESDGRLRLLRAVKNRFGAINELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLSNPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAIMSSLRNRPLPHDLLVFGEVGLSGEVRPVPSGQERLKEAAKHGFKRAIVPKANAPKEAPPGLQVIAVTRLEQALDALFE
>NZ_CP009533.1|WP_052393482.1|4359084_4359537_-|large-conductance-mechanosensitive-channel-protein-MscL
MSVLSEFKAFAVKGNVVDMAVGIIIGAAFGKIVSSFVGDVIMPPLGLLIGGVDFSDLAITLRAAVGDAPAVVLAYGKFIQTVIDFIIVAFAIFMGVKAINRLRHQEEKKPAAPAAPSKEELLLGEIRDLLKEQNGKGTVVTTAPTPGPQI
>NZ_CP009533.1|WP_043192780.1|4357893_4358670_+|ferredoxin--NADP-reductase
MTASAEKFTRQTILEVQPLTPSLFTLRTTRDAGFRFVAGQFARLGVTKADGSVVWRAYSMASSPHDEFLEFFSIVVPGGEFTSELSRLRAGDELLVEKLATGYLTLDRFVDGRDLWMLATGTGVAPFVSILQDFPVWEKFEHIKLVYSAREGQELAYRELIAGLEQRDYLAEFAGKLQFIPIVTRERVPGTLHGRITDLIQNGDLEKTAALELTPEHSRVMICGNPQMIDDTRQLLKGRDMNLSLSRRPGQVAVENYW
>NZ_CP009533.1|WP_043192779.1|4356533_4357658_-|class-I-SAM-dependent-methyltransferase
MPVLTSPFAELDLIRQPDQPNEPLQAFDAADEYLLAYMAEHPLPAQARVLILNDSFGALAISLQGSVHLISSGDSFLGALGLEKNLTRNGLPFDSIEFVPASAPVQGPFDRVLVRVPKTLALLEEQLIRLHGHLAPGAEVVAAGMVKHLPHAAGDLLEKYIGTMRPSLAVKKARLLIATAEGKPAPISPYPTRYQLDEPRLMLLNHANVFCREGLDIGTRAFLPHLPRNLGAARVADLGCGNGVLAIVSALANPQASYTLVDESFMAVQSAQENWQAALGARQVEVRAGDGLAGQAPQSLDVVLCNPPFHQQQVVGDFLAWRMFQQTREALVTGGDLYIVGNRHLGYHSKLARLFRGVEQVAATPKFVVLRARK
>NZ_CP009533.1|WP_043192788.1|4367697_4368951_-|serine-hydroxymethyltransferase
MFSRSQTLAKYDADLFAAMEQEAQRQEDHIELIASENYTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDVIEQLAIDRAKELFGADYANVQPHAGSQANSAVYLALLQAGDTILGMSLAHGGHLTHGASVSSSGKLYNAVQYGIDAQGLIDYDEVERLALEHKPKMIVAGFSAYSQILDFPRFREIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRGPRGGLILARANAEIEKKLNSAVFPGAQGGPLEHVIAAKAVCFKEALQPEFKTYQQQVVKNAQAMAKVFIDRGFDVVSGGTENHLFLLSLIKQDISGKDADAALGKAFITVNKNSVPNDPRSPFVTSGLRFGTPAVTTRGFKEAECQELAGWICDILADLNNEAVIDAVRQKVQAICAKLPVYSA
>NZ_CP009533.1|WP_148308588.1|4369179_4372638_-|bifunctional-diguanylate-cyclase/phosphodiesterase
MFSLSNLNQPSSLRPPVQGSGTPLHGSLKGALAFLVLMLLMLLFWQLFDQFQRTQADQRQHSIDYSADLADHVNLNMALNAQIVLNQLLTTQPFPSARERAETLGRVQRSVPELQSLAWLSGDARVIADTLAQVDDEAFITTLVSRLDGDSHYYTNSPAADLVYLLIRQPGENTNGYWLLRMNPIVIGRLIHQVEREQNPSWVLENHADKHVIGRAGPAPLGVSELSATELDQSVLVTQLSHSDWQLRSLFDARQARLALLPPLIGKCLLGLLVSLVPLLALLSMRRRQRELNEERRRYQDIFEGAGVALCVLDLSGVLALFERFGLSAHTDLAQWLQDNPALHQDLLQALRVTEVNHVALRVLQVHTSEQAWRKLIESCTDQDAGIGYQLIAALLERQQQLDLEIRLDNQQGQDQYLWVTVRFPERAEDYHAVILSITDVTSHRTASESLRQSEKRHRMLAESISDVIFSTNNRLELNYVSPSVQTVLGFDADWVLQNGWQSMLANPAQMTGINALLAQVHQALHAPAELAALRSDLKTQVFMFDCLRHDGRKIPIELRLVLIWDAQGMFEGILGVGRDVSQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVAQVLDQLPNMLTVDDQQEAHLRYVLKQLQLRGTWEGEVWLKRRNGEHYPAWVGITAVLDDEGDLASYVCFFSDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQQSWVVLMFLDLDRFKPINDSLGHAAGDRMLKDMATRLLGCVDDDDTVARMGGDEFTLLLQPRATRELALNQAIHVAEQILGSLVKPFVLEGREFFVTASVGIALSPQDGGELSQLMKNADTAMYHAKERGKNNFQFYQADMNATALERLELESDLRHALEQEEFVLYYQPQFSGDGKRLTGAEALLRWNHPRRGLVPPGEFIPVLEELGLVVDVGDWVLAEACRQLKAWHVAKVRVPKVSVNISARQFADGQLGKRIARTLESIGLPPACLELELTESILMREVNEALVILDTLKNLGLSIAIDDFGTGYSSLNYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLREHGCDEVQGYLFGRPMQAHRFEAQFSNDALFLFQ
>NZ_CP009533.1|WP_043192790.1|4373019_4374684_+|energy-dependent-translational-throttle-protein-EttA
MAQYVYTMHRLSKVVPPKREILKNISLSFFPGAKIGVLGLNGSGKSTLLKIMAGVDKEFDGEARPMPELNVGYLPQEPQLDPTKTVREVVEEAVSVIKDAQARLDEVYAAYAEPDADFDKLAAEQAKLESILQASDGHNLERQLEVAADALRLPAWDAKIEHLSGGEKRRVALCRLLLSAPDMLLLDEPTNHLDADSVAWLEHFLHDFPGTVVAITHDRYFLDNVAGWILELDRGAGIPYEGNYSGWLEAKSDRLAQESKQQSAHEKAMKEELEWVRKGAKARQSKSKARLQRFEEMQSQEFQKRSETNEIYIPAGPRLGDKVIEFKNVTKGYGDRVLIDNLSFAMPKGAIVGVIGGNGAGKSTLFRMLMGKEQPDSGSIEIGETVQLACVDQSRDDLDGSKSVFQQISDGSDQIRIGNYEIPSRTYVGRFNFKGGDQQKFVKDLSGGERGRLHLALTLKEGGNVLLLDEPSNDLDVETLRSLEEALLDFPGAAIVISHDRWFLDRVATHILAYEDDSQAVFFEGNYTEYEADRKKRLGEAAAQPHRVRHKKLA
>NZ_CP009533.1|WP_043192791.1|4374747_4375245_-|GreA/GreB-family-elongation-factor
MSRAFVNEDHAAAQATQPVERLISTQPNYVTASGLAQLQARVTEVQILQAEQSAMGERADRQRMADLERDMRYYQHRLQHAQVVAPITSTAKVQIGSWVTFADEQGDEQRVCLVGEDQADAGVGLINWASPLGRALLGAEVGEERVWRRPAGDLTVEIMGIQTGP
>NZ_CP009533.1|WP_043192792.1|4375471_4377325_-|DUF4105-domain-containing-protein
MLKRLAFLALCVCAPLHAAPHIDAQRLQQLANEPYWISVGHYERGKLGGWRSYVDDRKFFLAEDGAHHPDAELQATLQAIYAPAASGDKHAQCVFPARTRWLREQLGLTDLPNVDCAEFSKWISDVAPHSAVLIFPAAYLNSPSSMFGHTLLRIDQADVQSNNTALLSYAINFGAYVEGGDNSILYAWKGLAGGYPGLFALVPYQEKLSEYRSLENRDLWEYRLNLTPEETGRMVEHVWELKQVQFDYFFFDENCSYRLLELLQVARPGLDLTSQFPLTAIPTDTVKAVKAAGLVEKIDYRASRERELLERAKPLDSNEQQWVQKIAADTAQIDSEGFQALGRDRQALIQDAAFRLERYRATGQERDPARTQRSFQLLRAINRNPPPPLAIDRPGLPEDGHQSRTWSAGVGTRGDTAFAEYGLRMAYHDLNDNAEGFPLGAQIEILGLKVRQYEGNKWQVQQLDLATIRSLTPRNELLQPLSWQVTGGLERVLGKHGDENLVSHVNGGAGGTWQLSEHMLGFALGTVRVEHNNDFAQFVAPAAGFNSGVLWKNALGNFSLEGKGDYFTNGEVRRSLSLNQQWEVSRNLGLRLSAQRDFSHMSSPRNEVMLEVKWYHY
>NZ_CP009533.1|WP_043192793.1|4377392_4377881_-|DUF3015-domain-containing-protein
MKRILLGTLFAAVSINAMAQAPGGPDCGWGNMLFEGQRGTPAHFLASTTNGTSGNATFGMTSGTNGCSTNAALTYGGKSWIAMNGMMDELSEDMAKGQGEALTTYAVVLGVAPEDRAYFQSVTHEHFQQIFSSADSTAEDVHSNTIAVLKNDPRLAKYATQA
>NZ_CP009533.1|WP_043192794.1|4378106_4380548_+|ATP-binding-protein
MPDSVAASLRLAPEALTRPFSAEQFNFTTTNDLEPFRGVLGQERAVEALQFGVAMPRPGYNVFVMGEPGTGRFSFVKRYLKAEGKRLQTPADWVYVNNFDEPREPRALELPPGSAGAFIGDIGALIDNLLATFPAVFEHPSYQQRKSAIDRAFNQRYDRALDVIEKLSLEKDIALYRDSSNIAFTPMLDGKALDEAEFAQLPEADRERFHTDISNLEERLNEELASLPQWKRESSNQLRQLNEETITLALQPLLAPLSEKYAENAAVCGYLQAIQVNLLKTVVEQLVDDSKADAQARKLLEEQYSPSLVVGHHQSGGAPVVFEPHPTYDNLFGRIEYSTDQGALYTTYKQLRPGALHRANGGFLILEAEKMLGEPFVWDALKRALQSRKLKMESPLGEFGRLATVTLTPQMIPLQVKVIIIGARQLYYALQDHDPDFQEMFRVLVDFDEDIPMVDESLEQFAQLLKTRTSEEGMAPLTGDAVARLATYSARLAENQGRLSARIGDLFQLVSEADFIRHLANEERTDAGHIERALKAKATRTGRVSARILDDMLAGIILIDTTGAAVGKCNGLTVLEVGDSAFGVPARISATVYPGGSGIVDIEREVNLGQPIHSKGVMILTGYLGSRYAQEFPLAISASIALEQSYGYVDGDSASLGEACTLISALSKMPLKQCFAITGSINQFGEVQAVGGVNEKIEGFFRLCEARGLTGEQGAIIPQANVATLMLDEKVLQAVRDGKFHVYAVRQADEALSLLAGEPAGEPDENGEFPEGSINARVVERLRVIAEMISEEDFKEAEKEHALEELVEVRPTV
>NZ_CP009533.1|WP_043192795.1|4380707_4381046_+|hypothetical-protein
MARSLSLNRQCLGLMTRIECSVRPLAGDNGLWTLLFAAGMAGEQPSALKAQGPFHGPLAAETVLDAIVESLTLHGYTLSDDPQAWALHLQRQLRAINGQRGTRSVRCQFPEH
>NZ_CP009533.1|WP_043192796.1|4381147_4381636_+|TIGR00645-family-protein
MERFIEKTMYASRWLLAPIYVGLSLGLLALALKFFQEIFHVLPNIFAMAESEVILVLLSLIDMALVGGLLVMVMISGYENFVSQLDIEEGVEKLSWLGKMDSSSLKMKVAASIVAISSIHLLRVFMDAKNIEPQYLMWYVIIHMTFVISAFAMGYLDKLTKH
>NZ_CP009533.1|WP_043192797.1|4381777_4382395_+|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MSEVQLSTDETRVSYGIGRQLGGQLRDNPPPGVSLEAILVGLTDAFRGHESRVSEEELNASFKVIREIMQAEQQAKAEAAAGEGKAYLAENAKRGEITTTASGLQYEVLSTGEGSKPSGDSTVRVHYHGTLTDGTVFDSSYNRGEPAEFPVNGVIAGWTEALQLMPAGSKWRVHVPSELAYGAQGVGSIPPHSVLVFDVELLEVL

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Crispr_ID: NZ_CP009533_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009533_15

4382469-4382556

Orphan

Consensus_repeat	Method
CCTGTAGCAGCGGCGCAAGCCGCGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009533_15

>merge|NZ_CP009533|15|4382469-4382556|CRISPRCasFinder
CCTGTAGCAGCGGCGCAAGCCGCGTCCGGCCCCACCGCGACCCCCCCTTGCTCCACACGACCCCTGTAGCAGCGGCGCAAGCCGCGTC

>NZ_CP009533|15|14|4382469-4382556|CRISPRCasFinder
CCTGTAGCAGCGGCGCAAGCCGCGTC	CGGCCCCACCGCGACCCCCCCTTGCTCCACACGACC
CCTGTAGCAGCGGCGCAAGCCGCGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009533.1\|WP_043192803.1\|4385560_4386781_+\|Obg-family-GTPase-CgtA	unknown	unknown	gnl\|CDD\|237047
NZ_CP009533.1\|WP_043192791.1\|4374747_4375245_-\|GreA/GreB-family-elongation-factor	unknown	unknown	gnl\|CDD\|180535
NZ_CP009533.1\|WP_043192801.1\|4383468_4384437_-\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|182813
NZ_CP009533.1\|WP_043192805.1\|4388738_4389017_-\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP009533.1\|WP_008371588.1\|4385117_4385375_+\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NZ_CP009533.1\|WP_043192788.1\|4367697_4368951_-\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234571
NZ_CP009533.1\|WP_043192792.1\|4375471_4377325_-\|DUF4105-domain-containing-protein	unknown	unknown	gnl\|CDD\|379156
NZ_CP009533.1\|WP_043192804.1\|4388112_4388574_+\|CreA-family-protein	unknown	unknown	gnl\|CDD\|236752
NZ_CP009533.1\|WP_043193848.1\|4386974_4388093_+\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
NZ_CP009533.1\|WP_043193849.1\|4389269_4390808_+\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|223800
NZ_CP009533.1\|WP_043192797.1\|4381777_4382395_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|223619
NZ_CP009533.1\|WP_043192795.1\|4380707_4381046_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009533.1\|WP_043192798.1\|4382591_4382834_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009533.1\|WP_148308588.1\|4369179_4372638_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|236645
NZ_CP009533.1\|WP_043192793.1\|4377392_4377881_-\|DUF3015-domain-containing-protein	unknown	unknown	gnl\|CDD\|378601
NZ_CP009533.1\|WP_043192799.1\|4382977_4383319_-\|alkylphosphonate-utilization-protein	unknown	unknown	gnl\|CDD\|225380
NZ_CP009533.1\|WP_043192790.1\|4373019_4374684_+\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NZ_CP009533.1\|WP_043192794.1\|4378106_4380548_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379314
NZ_CP009533.1\|WP_043192796.1\|4381147_4381636_+\|TIGR00645-family-protein	unknown	unknown	gnl\|CDD\|179964
NZ_CP009533.1\|WP_003176051.1\|4384768_4385083_+\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510

Protein	Function_ID	Function_description	E-value
NZ_CP009533.1\|WP_043192803.1\|4385560_4386781_+\|Obg-family-GTPase-CgtA	gnl\|CDD\|237047	PRK12298, obgE, GTPase CgtA; Reviewed.	0
NZ_CP009533.1\|WP_043192791.1\|4374747_4375245_-\|GreA/GreB-family-elongation-factor	gnl\|CDD\|180535	PRK06342, PRK06342, transcription elongation factor GreA.	5.24171e-30
NZ_CP009533.1\|WP_043192801.1\|4383468_4384437_-\|polyprenyl-synthetase-family-protein	gnl\|CDD\|182813	PRK10888, PRK10888, octaprenyl diphosphate synthase; Provisional.	2.47693e-129
NZ_CP009533.1\|WP_043192805.1\|4388738_4389017_-\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.4662e-26
NZ_CP009533.1\|WP_008371588.1\|4385117_4385375_+\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	4.2349e-50
NZ_CP009533.1\|WP_043192788.1\|4367697_4368951_-\|serine-hydroxymethyltransferase	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	0
NZ_CP009533.1\|WP_043192792.1\|4375471_4377325_-\|DUF4105-domain-containing-protein	gnl\|CDD\|379156	pfam13387, DUF4105, Domain of unknown function (DUF4105). This is a family of uncharacterized bacterial proteins. There is a highly conserved histidine residue and a well-conserved NCT motif.	1.58999e-65
NZ_CP009533.1\|WP_043192804.1\|4388112_4388574_+\|CreA-family-protein	gnl\|CDD\|236752	PRK10756, PRK10756, protein CreA.	2.64453e-81
NZ_CP009533.1\|WP_043193848.1\|4386974_4388093_+\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	0
NZ_CP009533.1\|WP_043192797.1\|4381777_4382395_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|223619	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones].	3.57852e-82
NZ_CP009533.1\|WP_043192790.1\|4373019_4374684_+\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NZ_CP009533.1\|WP_148308588.1\|4369179_4372638_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	1.16801e-130
NZ_CP009533.1\|WP_043192793.1\|4377392_4377881_-\|DUF3015-domain-containing-protein	gnl\|CDD\|378601	pfam11220, DUF3015, Protein of unknown function (DUF3015). This bacterial family of proteins has no known function.	1.47626e-67
NZ_CP009533.1\|WP_043192799.1\|4382977_4383319_-\|alkylphosphonate-utilization-protein	gnl\|CDD\|225380	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism].	1.6298e-63
NZ_CP009533.1\|WP_043193849.1\|4389269_4390808_+\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|223800	COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only].	2.58178e-175
NZ_CP009533.1\|WP_043192794.1\|4378106_4380548_+\|ATP-binding-protein	gnl\|CDD\|379314	pfam13654, AAA_32, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	0
NZ_CP009533.1\|WP_043192796.1\|4381147_4381636_+\|TIGR00645-family-protein	gnl\|CDD\|179964	PRK05208, PRK05208, hypothetical protein; Provisional.	6.13869e-88
NZ_CP009533.1\|WP_003176051.1\|4384768_4385083_+\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	7.95426e-54

>NZ_CP009533.1|WP_043192797.1|4381777_4382395_+|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MSEVQLSTDETRVSYGIGRQLGGQLRDNPPPGVSLEAILVGLTDAFRGHESRVSEEELNASFKVIREIMQAEQQAKAEAAAGEGKAYLAENAKRGEITTTASGLQYEVLSTGEGSKPSGDSTVRVHYHGTLTDGTVFDSSYNRGEPAEFPVNGVIAGWTEALQLMPAGSKWRVHVPSELAYGAQGVGSIPPHSVLVFDVELLEVL
>NZ_CP009533.1|WP_043192796.1|4381147_4381636_+|TIGR00645-family-protein
MERFIEKTMYASRWLLAPIYVGLSLGLLALALKFFQEIFHVLPNIFAMAESEVILVLLSLIDMALVGGLLVMVMISGYENFVSQLDIEEGVEKLSWLGKMDSSSLKMKVAASIVAISSIHLLRVFMDAKNIEPQYLMWYVIIHMTFVISAFAMGYLDKLTKH
>NZ_CP009533.1|WP_043192795.1|4380707_4381046_+|hypothetical-protein
MARSLSLNRQCLGLMTRIECSVRPLAGDNGLWTLLFAAGMAGEQPSALKAQGPFHGPLAAETVLDAIVESLTLHGYTLSDDPQAWALHLQRQLRAINGQRGTRSVRCQFPEH
>NZ_CP009533.1|WP_043192794.1|4378106_4380548_+|ATP-binding-protein
MPDSVAASLRLAPEALTRPFSAEQFNFTTTNDLEPFRGVLGQERAVEALQFGVAMPRPGYNVFVMGEPGTGRFSFVKRYLKAEGKRLQTPADWVYVNNFDEPREPRALELPPGSAGAFIGDIGALIDNLLATFPAVFEHPSYQQRKSAIDRAFNQRYDRALDVIEKLSLEKDIALYRDSSNIAFTPMLDGKALDEAEFAQLPEADRERFHTDISNLEERLNEELASLPQWKRESSNQLRQLNEETITLALQPLLAPLSEKYAENAAVCGYLQAIQVNLLKTVVEQLVDDSKADAQARKLLEEQYSPSLVVGHHQSGGAPVVFEPHPTYDNLFGRIEYSTDQGALYTTYKQLRPGALHRANGGFLILEAEKMLGEPFVWDALKRALQSRKLKMESPLGEFGRLATVTLTPQMIPLQVKVIIIGARQLYYALQDHDPDFQEMFRVLVDFDEDIPMVDESLEQFAQLLKTRTSEEGMAPLTGDAVARLATYSARLAENQGRLSARIGDLFQLVSEADFIRHLANEERTDAGHIERALKAKATRTGRVSARILDDMLAGIILIDTTGAAVGKCNGLTVLEVGDSAFGVPARISATVYPGGSGIVDIEREVNLGQPIHSKGVMILTGYLGSRYAQEFPLAISASIALEQSYGYVDGDSASLGEACTLISALSKMPLKQCFAITGSINQFGEVQAVGGVNEKIEGFFRLCEARGLTGEQGAIIPQANVATLMLDEKVLQAVRDGKFHVYAVRQADEALSLLAGEPAGEPDENGEFPEGSINARVVERLRVIAEMISEEDFKEAEKEHALEELVEVRPTV
>NZ_CP009533.1|WP_043192793.1|4377392_4377881_-|DUF3015-domain-containing-protein
MKRILLGTLFAAVSINAMAQAPGGPDCGWGNMLFEGQRGTPAHFLASTTNGTSGNATFGMTSGTNGCSTNAALTYGGKSWIAMNGMMDELSEDMAKGQGEALTTYAVVLGVAPEDRAYFQSVTHEHFQQIFSSADSTAEDVHSNTIAVLKNDPRLAKYATQA
>NZ_CP009533.1|WP_043192792.1|4375471_4377325_-|DUF4105-domain-containing-protein
MLKRLAFLALCVCAPLHAAPHIDAQRLQQLANEPYWISVGHYERGKLGGWRSYVDDRKFFLAEDGAHHPDAELQATLQAIYAPAASGDKHAQCVFPARTRWLREQLGLTDLPNVDCAEFSKWISDVAPHSAVLIFPAAYLNSPSSMFGHTLLRIDQADVQSNNTALLSYAINFGAYVEGGDNSILYAWKGLAGGYPGLFALVPYQEKLSEYRSLENRDLWEYRLNLTPEETGRMVEHVWELKQVQFDYFFFDENCSYRLLELLQVARPGLDLTSQFPLTAIPTDTVKAVKAAGLVEKIDYRASRERELLERAKPLDSNEQQWVQKIAADTAQIDSEGFQALGRDRQALIQDAAFRLERYRATGQERDPARTQRSFQLLRAINRNPPPPLAIDRPGLPEDGHQSRTWSAGVGTRGDTAFAEYGLRMAYHDLNDNAEGFPLGAQIEILGLKVRQYEGNKWQVQQLDLATIRSLTPRNELLQPLSWQVTGGLERVLGKHGDENLVSHVNGGAGGTWQLSEHMLGFALGTVRVEHNNDFAQFVAPAAGFNSGVLWKNALGNFSLEGKGDYFTNGEVRRSLSLNQQWEVSRNLGLRLSAQRDFSHMSSPRNEVMLEVKWYHY
>NZ_CP009533.1|WP_043192791.1|4374747_4375245_-|GreA/GreB-family-elongation-factor
MSRAFVNEDHAAAQATQPVERLISTQPNYVTASGLAQLQARVTEVQILQAEQSAMGERADRQRMADLERDMRYYQHRLQHAQVVAPITSTAKVQIGSWVTFADEQGDEQRVCLVGEDQADAGVGLINWASPLGRALLGAEVGEERVWRRPAGDLTVEIMGIQTGP
>NZ_CP009533.1|WP_043192790.1|4373019_4374684_+|energy-dependent-translational-throttle-protein-EttA
MAQYVYTMHRLSKVVPPKREILKNISLSFFPGAKIGVLGLNGSGKSTLLKIMAGVDKEFDGEARPMPELNVGYLPQEPQLDPTKTVREVVEEAVSVIKDAQARLDEVYAAYAEPDADFDKLAAEQAKLESILQASDGHNLERQLEVAADALRLPAWDAKIEHLSGGEKRRVALCRLLLSAPDMLLLDEPTNHLDADSVAWLEHFLHDFPGTVVAITHDRYFLDNVAGWILELDRGAGIPYEGNYSGWLEAKSDRLAQESKQQSAHEKAMKEELEWVRKGAKARQSKSKARLQRFEEMQSQEFQKRSETNEIYIPAGPRLGDKVIEFKNVTKGYGDRVLIDNLSFAMPKGAIVGVIGGNGAGKSTLFRMLMGKEQPDSGSIEIGETVQLACVDQSRDDLDGSKSVFQQISDGSDQIRIGNYEIPSRTYVGRFNFKGGDQQKFVKDLSGGERGRLHLALTLKEGGNVLLLDEPSNDLDVETLRSLEEALLDFPGAAIVISHDRWFLDRVATHILAYEDDSQAVFFEGNYTEYEADRKKRLGEAAAQPHRVRHKKLA
>NZ_CP009533.1|WP_148308588.1|4369179_4372638_-|bifunctional-diguanylate-cyclase/phosphodiesterase
MFSLSNLNQPSSLRPPVQGSGTPLHGSLKGALAFLVLMLLMLLFWQLFDQFQRTQADQRQHSIDYSADLADHVNLNMALNAQIVLNQLLTTQPFPSARERAETLGRVQRSVPELQSLAWLSGDARVIADTLAQVDDEAFITTLVSRLDGDSHYYTNSPAADLVYLLIRQPGENTNGYWLLRMNPIVIGRLIHQVEREQNPSWVLENHADKHVIGRAGPAPLGVSELSATELDQSVLVTQLSHSDWQLRSLFDARQARLALLPPLIGKCLLGLLVSLVPLLALLSMRRRQRELNEERRRYQDIFEGAGVALCVLDLSGVLALFERFGLSAHTDLAQWLQDNPALHQDLLQALRVTEVNHVALRVLQVHTSEQAWRKLIESCTDQDAGIGYQLIAALLERQQQLDLEIRLDNQQGQDQYLWVTVRFPERAEDYHAVILSITDVTSHRTASESLRQSEKRHRMLAESISDVIFSTNNRLELNYVSPSVQTVLGFDADWVLQNGWQSMLANPAQMTGINALLAQVHQALHAPAELAALRSDLKTQVFMFDCLRHDGRKIPIELRLVLIWDAQGMFEGILGVGRDVSQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVAQVLDQLPNMLTVDDQQEAHLRYVLKQLQLRGTWEGEVWLKRRNGEHYPAWVGITAVLDDEGDLASYVCFFSDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQQSWVVLMFLDLDRFKPINDSLGHAAGDRMLKDMATRLLGCVDDDDTVARMGGDEFTLLLQPRATRELALNQAIHVAEQILGSLVKPFVLEGREFFVTASVGIALSPQDGGELSQLMKNADTAMYHAKERGKNNFQFYQADMNATALERLELESDLRHALEQEEFVLYYQPQFSGDGKRLTGAEALLRWNHPRRGLVPPGEFIPVLEELGLVVDVGDWVLAEACRQLKAWHVAKVRVPKVSVNISARQFADGQLGKRIARTLESIGLPPACLELELTESILMREVNEALVILDTLKNLGLSIAIDDFGTGYSSLNYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLREHGCDEVQGYLFGRPMQAHRFEAQFSNDALFLFQ
>NZ_CP009533.1|WP_043192788.1|4367697_4368951_-|serine-hydroxymethyltransferase
MFSRSQTLAKYDADLFAAMEQEAQRQEDHIELIASENYTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDVIEQLAIDRAKELFGADYANVQPHAGSQANSAVYLALLQAGDTILGMSLAHGGHLTHGASVSSSGKLYNAVQYGIDAQGLIDYDEVERLALEHKPKMIVAGFSAYSQILDFPRFREIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRGPRGGLILARANAEIEKKLNSAVFPGAQGGPLEHVIAAKAVCFKEALQPEFKTYQQQVVKNAQAMAKVFIDRGFDVVSGGTENHLFLLSLIKQDISGKDADAALGKAFITVNKNSVPNDPRSPFVTSGLRFGTPAVTTRGFKEAECQELAGWICDILADLNNEAVIDAVRQKVQAICAKLPVYSA
>NZ_CP009533.1|WP_043192798.1|4382591_4382834_-|hypothetical-protein
MTYLIDAWLDRPHPYLRILHRDTGEVCAVLGEDALDELRDQGDLDLHGLSSSEPVVLKELVRNLFLFCYARALRPMGELH
>NZ_CP009533.1|WP_043192799.1|4382977_4383319_-|alkylphosphonate-utilization-protein
MSTLPPCPKCQSEYTYEDGTQLICPECSHEWSATGEDTADGDALVIKDSVGNALADGDTVTVIKDLKVKGSSLVVKVGTKVKNIRLCDGDHDIDCKIDGIGAMKLKSEFVRKV
>NZ_CP009533.1|WP_043192801.1|4383468_4384437_-|polyprenyl-synthetase-family-protein
MQPQAFHRAVADDFSAVDEIIKKQLTSRVPLVSTISDYITSSGGKRLRPLLVLLAGKALGHQSDDLRLLAATIELLHTSTLLHDDVVDMSGMRRGRSTANAKWGNAPSVLVGDFLYSRSFEMMVELGSMSVMKILSHATRIIAEGEVLQLSKVRDASTTEEIYMEVIRGKTAMLFEASAHSAAALTGASAEQCEALRTFGDHLGVAFQLVDDLLDYRGDAETLGKNVGDDLAEGKPTLPLIYTMREGNAEQAALVRQAIQKGGIEDLERIRVAVEDCGALDYTAQLARDYVAKAIAQLEVLPASQYRNALVELSEFAVARTH
>NZ_CP009533.1|WP_003176051.1|4384768_4385083_+|50S-ribosomal-protein-L21
MSYAVIVTGGKQYKVAPGEYLKIEKLEIATGESVTFDRVLLVANGDDVNIGAPVVAGATVVAEVISQGRHDKVRIIKFRRRKHHMKRMGHRQWYTEIKITGIQA
>NZ_CP009533.1|WP_008371588.1|4385117_4385375_+|50S-ribosomal-protein-L27
MAHKKAGGSTRNGRDSEAKRLGVKMYGGQAIIPGNIIVRQRGTQFHAGYGVGMGKDHTLFAKVAGVIKFEVKGAFGRRYVSVVAA
>NZ_CP009533.1|WP_043192803.1|4385560_4386781_+|Obg-family-GTPase-CgtA
MKFVDEVSIRVKAGDGGNGCMSFRREKFIENGGPNGGDGGDGGSIYMIADENLNTLVDYRYTRHFDAERGANGGSTDCTGKKGEDMELRVPVGTTVIDASTQEVIGDLVKAGQRLLVAHGGWHGLGNTRFKSSTNRAPRQTSPGKPGEQRDLKLEMKVLADVGLLGLPNAGKSTFIRSVSAAKPKVADYPFTTLVPNLGVVSVDRWKSFVVADIPGLIEGASHGAGLGIRFLKHLARTRVLLHLVDMAPLDETSAADAAEVIVNELVKFSPSLAERERWLVLNKCDQILEEEHEERVKEIVDRLEWEGPVYVISAIAKEGTERLSRDIMRYLEDRADRLARDPAYADELAELDQRIEDEARAQLQALDDQRALRRSGVKSVHDIGDDDDWEEEDAEDGPEIIYVRD
>NZ_CP009533.1|WP_043193848.1|4386974_4388093_+|glutamate-5-kinase
MRSKVTGAQRWVVKIGSALLTADGKGLDRAAMGVWVEQMVALHNAGVELVLVSSGAVAAGMSRLGWAKRPSGMHELQAAAAIGQMGLVQAWESSFAEHGRHTAQILLTHDDLSDRKRYLNARSTLRTLVELGVVPVINENDTVVTDEIRFGDNDTLAALVANLVEADLLVILTDRDGMFDADPRTNPDAQLIFEARADDPSLDAVAGGTGGALGRGGMQTKLRAARLAARSGAHTVIVGGRIERVLDRLKAGERLGTLLSPEREMLAARKQWLAGHLQTRGTLVLDEGAVQALTGGHKSLLPVGVKVVQGSFRRGEMVVCVAPDGREVARGLANYSALEAQKIIGQSSDVIERLLGYMAEPELVHRDNLILV
>NZ_CP009533.1|WP_043192804.1|4388112_4388574_+|CreA-family-protein
MKVLKALAAAMLCLPMLASAEEIGQVSTVFKVVGPNDRIVVEAFDDPKVPGVTCYLSRAKTGGVKGGLGLAEDRAEASIACRQVGPIQLPDNLKEGEEVFKERTSLVFKTMQVVRFHDKKRNALVYLVYSDRMIEGSPQNAVTAIPIRPWTTE
>NZ_CP009533.1|WP_043192805.1|4388738_4389017_-|30S-ribosomal-protein-S20
MANSPSAKKRAKQAEKRRSHNASLRSMVRTYIKNVVKAIDAKDAEKAQAAYVLAVPVIDRMADKGIIHKNKAARHKGRLNGHIKALNQAAAA
>NZ_CP009533.1|WP_043193849.1|4389269_4390808_+|murein-biosynthesis-integral-membrane-protein-MurJ
MNLLKSLAAVSSITMVSRVLGFVRDTIIARIFGAGMVTDAFFIAFKLPNLLRRIFAEGAFSQAFVPILAEYKSQQGEEATRTFVAYVAGLLTLALALVTVAGILAAPWVIWATAPGFADTPEKFQLTTDLLRVTFPYILLISLSSFVGAILNTYNRFSVPAFTPTLLNVSMILFALFLTPYFDPPVMALGWAVLAGGLAQLLYQLPHLKKLGLLVLPRVSLRDTGAVRVMKQMLPAILGVSVSQISLIINTIFASFLVAGSVSWMYYADRLMELPSGVLGVALGTILLPTLAKTYANKDRHEYSRILDWGLRLCFVLVLPCAVALALLAEPLTVALFQYGKFSALDAAMTQRALIAYSIGLLGIILIKVLAPGFYAQQNIRTPVKIAIFTLVATQVFNLLLISHLQHAGLALAISLGACLNAGLLYWKLRQQDLFQPQPGWTAFLCKLGVAVLAMAGVLLVMLQYMPAWADGQMLERFLRLGLLVLTGVLVYFGMLLAMGFRLKDFARRGLA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009533_1	1.1\|384610\|33\|NZ_CP009533\|CRISPRCasFinder	384610-384642	33	NZ_CP049359	Deinococcus wulumuqiensis R12 plasmid unnamed2, complete sequence	93678-93710	7	0.788
NZ_CP009533_1	1.1\|384610\|33\|NZ_CP009533\|CRISPRCasFinder	384610-384642	33	NZ_CP025812	Sulfitobacter sp. SK025 plasmid unnamed4, complete sequence	39981-40013	8	0.758
NZ_CP009533_12	12.1\|4280017\|31\|NZ_CP009533\|CRISPRCasFinder	4280017-4280047	31	NC_012855	Ralstonia pickettii 12D plasmid pRp12D01, complete sequence	232017-232047	8	0.742

1. spacer 1.1|384610|33|NZ_CP009533|CRISPRCasFinder matches to NZ_CP049359 (Deinococcus wulumuqiensis R12 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.788

cacaccaccaatctcgcggcacccaccccgtcc	CRISPR spacer
ctcaccaccactctcgcggcacccgccaccccg	Protospacer
* ******** *************.** * .*

2. spacer 1.1|384610|33|NZ_CP009533|CRISPRCasFinder matches to NZ_CP025812 (Sulfitobacter sp. SK025 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.758

cacaccaccaatctcgcggcacccaccccgtcc	CRISPR spacer
cgccggcccaatctcgcggcacgcatcccgttc	Protospacer
*.*    *************** **.*****.*

3. spacer 12.1|4280017|31|NZ_CP009533|CRISPRCasFinder matches to NC_012855 (Ralstonia pickettii 12D plasmid pRp12D01, complete sequence) position: , mismatch: 8, identity: 0.742

taccagcctgcctcaagccccgccccctgta	CRISPR spacer
cgttaccctgcctcaatccccgccccgtgtg	Protospacer
....* ********** ********* ***.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1018038 : 1027422

uncultured_Caudovirales_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148308512.1\|1018038_1019340_-	MFS transporter	Q6JIH2	Burkholderia_virus	5.5e-73	40.4
WP_043187083.1\|1019687_1020617_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_043187086.1\|1020671_1021499_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	1.1e-50	45.2
WP_043187088.1\|1021585_1021927_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	1.3e-18	62.0
WP_043187091.1\|1022229_1022580_+	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	6.2e-32	58.6
WP_043187093.1\|1022602_1023892_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	8.1e-178	74.6
WP_043187095.1\|1023901_1024372_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	2.8e-51	61.5
WP_043187097.1\|1024536_1027422_-	ribonucleoside-diphosphate reductase subunit alpha	A0A2H4P767	Pseudomonas_phage	1.3e-178	45.5

DBSCAN-SWA_2

1903817 : 1953184

Pseudomonas_phage(37.5%)

holin,terminase,capsid,integrase,head,protease,tail,portal

attL 1892109:1892126|attR 1943862:1943879

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1892109:1892126	attL	NA	NA	NA	NA
WP_084139759.1\|1903817_1905404_-	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	2.0e-61	27.0
WP_043188871.1\|1905409_1906618_-\|integrase	site-specific integrase	J7HXC4	Pseudomonas_phage	1.6e-127	60.1
WP_043188874.1\|1906876_1907230_-	hypothetical protein	K7RW03	Vibrio_phage	1.1e-28	56.4
WP_043188878.1\|1907226_1907538_-	hypothetical protein	A0A2H4J7B8	uncultured_Caudovirales_phage	2.2e-36	68.3
WP_043188881.1\|1907851_1910014_-	DNA cytosine methyltransferase	Q5QF27	Pseudomonas_virus	6.6e-273	65.7
WP_043188883.1\|1910148_1911051_+	hypothetical protein	NA	NA	NA	NA
WP_043188887.1\|1911400_1911952_-	hypothetical protein	J9Q748	Salmonella_phage	7.1e-14	31.7
WP_043188890.1\|1912349_1912568_+	hypothetical protein	NA	NA	NA	NA
WP_043188893.1\|1912649_1913201_-	hypothetical protein	NA	NA	NA	NA
WP_148308538.1\|1913318_1913543_+	hypothetical protein	NA	NA	NA	NA
WP_043188900.1\|1913612_1913840_+	hypothetical protein	NA	NA	NA	NA
WP_043188902.1\|1913854_1914094_-	hypothetical protein	NA	NA	NA	NA
WP_043188904.1\|1914147_1914963_-	DUF2303 family protein	K7ZMK3	Xanthomonas_citri_phage	6.1e-46	38.9
WP_148308539.1\|1915364_1915568_-	hypothetical protein	NA	NA	NA	NA
WP_148308540.1\|1915637_1915871_-	hypothetical protein	NA	NA	NA	NA
WP_043188907.1\|1916138_1916519_-	helix-turn-helix transcriptional regulator	A0A2H4JA92	uncultured_Caudovirales_phage	1.8e-24	63.4
WP_043188909.1\|1917088_1917340_-	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_084139760.1\|1917512_1918361_-	helix-turn-helix domain-containing protein	K7P850	Enterobacteria_phage	1.2e-44	46.5
WP_043193501.1\|1918706_1919366_+	phage antirepressor KilAC domain-containing protein	A0A0U4J8Z7	Pseudomonas_phage	1.1e-53	55.8
WP_043188914.1\|1919377_1920139_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_043188916.1\|1920135_1920810_+	replication P family protein	A0A1B0YZY6	Pseudomonas_phage	3.8e-46	47.7
WP_043193502.1\|1920812_1921118_+	DUF1364 domain-containing protein	A0A2H4JIC4	uncultured_Caudovirales_phage	2.8e-28	62.5
WP_043188919.1\|1921114_1921543_+	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	1.7e-44	66.9
WP_043188922.1\|1921539_1922835_+\|integrase	site-specific integrase	A0A2D1GND4	Pseudomonas_phage	9.1e-129	54.5
WP_043188923.1\|1922831_1923152_+	hypothetical protein	A0A2D1GNG3	Pseudomonas_phage	4.2e-35	68.9
WP_043188924.1\|1923155_1923719_+	hypothetical protein	A0A2H4J2J2	uncultured_Caudovirales_phage	3.3e-67	59.0
WP_043188925.1\|1923870_1924200_+\|holin	phage holin, lambda family	A0A1V0DYG4	Shewanella_phage	1.5e-11	47.6
WP_043188926.1\|1924196_1924625_+	hypothetical protein	NA	NA	NA	NA
WP_043188930.1\|1924796_1925135_+	HNH endonuclease	B5WZZ4	Pseudomonas_phage	2.9e-26	51.9
WP_043188932.1\|1925291_1925798_+	hypothetical protein	Q3HQS6	Burkholderia_phage	4.6e-20	45.6
WP_167335533.1\|1925797_1927483_+\|terminase	terminase large subunit	A0A2H4JDK9	uncultured_Caudovirales_phage	3.1e-246	82.0
WP_167335520.1\|1927479_1927641_+	hypothetical protein	NA	NA	NA	NA
WP_043188937.1\|1927633_1928935_+\|portal	phage portal protein	H2BDA8	Pseudomonas_virus	3.5e-181	71.2
WP_043188939.1\|1928938_1929796_+\|protease	Clp protease ClpP	A0A1V0E8B8	Vibrio_phage	2.0e-95	63.6
WP_043188941.1\|1929798_1930986_+\|capsid	phage major capsid protein	H2BDB0	Pseudomonas_virus	1.4e-147	69.8
WP_043188945.1\|1931034_1931559_+	hypothetical protein	NA	NA	NA	NA
WP_043188947.1\|1931562_1931904_+\|head,tail	phage gp6-like head-tail connector protein	Q3HQT2	Burkholderia_phage	2.1e-16	49.5
WP_084139761.1\|1931900_1932227_+\|head,tail	head-tail adaptor protein	A0A2H4JC00	uncultured_Caudovirales_phage	1.4e-17	46.4
WP_167335521.1\|1932235_1932403_+	hypothetical protein	NA	NA	NA	NA
WP_043188950.1\|1932406_1932907_+	HK97 gp10 family phage protein	A0A2D1GNN2	Pseudomonas_phage	1.6e-60	67.7
WP_043188953.1\|1932899_1933286_+	DUF3168 domain-containing protein	A0A2D1GNT4	Pseudomonas_phage	1.9e-53	82.8
WP_043188956.1\|1933340_1933841_+	hypothetical protein	A0A2D1GNF2	Pseudomonas_phage	1.2e-63	72.1
WP_043188958.1\|1933880_1934225_+	hypothetical protein	NA	NA	NA	NA
WP_043188961.1\|1934221_1934458_+	hypothetical protein	NA	NA	NA	NA
WP_043188963.1\|1934499_1937811_+\|tail	phage tail tape measure protein	A0A2D1GNQ1	Pseudomonas_phage	5.6e-90	35.1
WP_043188966.1\|1937810_1938149_+\|tail	phage tail protein	A0A0S2SYI2	Pseudomonas_phage	4.6e-24	49.1
WP_043188969.1\|1938145_1938895_+\|tail	phage minor tail protein L	A0A0S2SY57	Pseudomonas_phage	1.7e-119	76.3
WP_043188972.1\|1938897_1939656_+	C40 family peptidase	A0A2H4J1J7	uncultured_Caudovirales_phage	1.4e-116	74.8
WP_043188974.1\|1939683_1940028_+	hypothetical protein	NA	NA	NA	NA
WP_043188977.1\|1940084_1940672_+\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	1.8e-71	74.7
WP_084139762.1\|1940729_1946279_+	DUF1983 domain-containing protein	A0A2H4J8Z6	uncultured_Caudovirales_phage	0.0e+00	62.6
1943862:1943879	attR	NA	NA	NA	NA
WP_148308541.1\|1946591_1947464_+	hypothetical protein	A0A1S5R1H4	Pseudomonas_phage	3.2e-29	35.0
WP_043188980.1\|1947511_1947742_+	hypothetical protein	A0A2H4J658	uncultured_Caudovirales_phage	2.2e-09	53.3
WP_043188983.1\|1947798_1948239_+	lysozyme	A0A088FRS5	Escherichia_phage	3.4e-43	62.3
WP_043188986.1\|1948290_1948521_+	hypothetical protein	NA	NA	NA	NA
WP_043188990.1\|1948583_1949114_+	hypothetical protein	NA	NA	NA	NA
WP_043188995.1\|1949335_1950130_+	DNA adenine methylase	Q5ZQW7	Pseudomonas_phage	4.5e-102	67.8
WP_148308542.1\|1950467_1951472_-	hypothetical protein	Q2P9X7	Enterobacteria_phage	2.6e-67	41.3
WP_043188998.1\|1951471_1953184_-	AAA family ATPase	Q2P9X8	Enterobacteria_phage	2.8e-133	46.9

DBSCAN-SWA_3

2409996 : 2418962

uncultured_Caudovirales_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043189814.1\|2409996_2411448_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.8e-88	40.4
WP_052393394.1\|2411644_2411989_+	hypothetical protein	NA	NA	NA	NA
WP_193385561.1\|2411994_2412375_-	helix-turn-helix domain-containing protein	E5FFF8	Burkholderia_phage	8.9e-08	41.0
WP_043189819.1\|2412678_2412939_+	ogr/Delta-like zinc finger family protein	Q9ZXJ1	Pseudomonas_virus	1.4e-12	44.6
WP_043189821.1\|2413045_2414005_-	2-hydroxyacid dehydrogenase	M1HUW8	Acanthocystis_turfacea_Chlorella_virus	6.3e-18	29.3
WP_052393395.1\|2414208_2415750_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_043189823.1\|2415757_2416042_-	hypothetical protein	NA	NA	NA	NA
WP_043189826.1\|2416567_2416960_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	4.8e-49	72.9
WP_043189828.1\|2416961_2417321_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.9e-31	57.5
WP_043189830.1\|2417320_2417614_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.5e-23	60.6
WP_043189832.1\|2417610_2417946_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	4.2e-38	68.5
WP_043189835.1\|2417942_2418962_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.4e-147	78.8

DBSCAN-SWA_4

3871458 : 3929748

Enterobacteria_phage(23.08%)

holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_177327959.1\|3871458_3871908_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_043192314.1\|3872128_3872533_+	RNA-binding protein S4	NA	NA	NA	NA
WP_043192315.1\|3872649_3873447_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_043192316.1\|3873553_3874456_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_043192317.1\|3874634_3876176_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	6.2e-124	46.5
WP_043192318.1\|3876340_3876580_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_167335528.1\|3876569_3876782_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_043192319.1\|3876998_3877472_-	surface antigen	NA	NA	NA	NA
WP_043192320.1\|3877765_3880102_-	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA
WP_043192321.1\|3880098_3880962_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_043192322.1\|3881056_3881932_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_043192323.1\|3882004_3882667_-	GMP/IMP nucleotidase	NA	NA	NA	NA
WP_043192324.1\|3882758_3883325_+	ADP compounds hydrolase NudE	NA	NA	NA	NA
WP_043192325.1\|3883321_3884149_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_043192326.1\|3884206_3885589_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_043192327.1\|3885585_3887400_-	sensor histidine kinase	NA	NA	NA	NA
WP_043192328.1\|3887492_3888038_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-52	58.7
WP_043192329.1\|3888034_3888910_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.1e-105	63.9
WP_043192330.1\|3888906_3889989_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.0e-100	54.5
WP_043192331.1\|3890210_3893132_+	aminotransferase	NA	NA	NA	NA
WP_043192332.1\|3893233_3894340_+	agmatine deiminase	M1ICB7	Acanthocystis_turfacea_Chlorella_virus	9.3e-106	48.9
WP_043192333.1\|3894610_3895900_+	OprD family porin	NA	NA	NA	NA
WP_043192334.1\|3896146_3897070_+\|protease	CAAX amino protease	NA	NA	NA	NA
WP_043192335.1\|3897235_3898495_-	sodium:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	5.1e-108	86.0
WP_043192336.1\|3898598_3899765_-	MFS transporter	NA	NA	NA	NA
WP_043192337.1\|3900034_3900421_+	MAPEG family protein	A0A2H4J146	uncultured_Caudovirales_phage	2.2e-46	75.0
WP_043192338.1\|3900477_3900885_-	DUF1090 domain-containing protein	NA	NA	NA	NA
WP_043192339.1\|3901137_3902331_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	3.9e-118	57.6
WP_043192340.1\|3902343_3903345_-	ArsR family transcriptional regulator	NA	NA	NA	NA
WP_043192341.1\|3903537_3905535_+	transketolase	NA	NA	NA	NA
WP_043192342.1\|3905773_3906829_+	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA
WP_043192343.1\|3906843_3908007_+	phosphoglycerate kinase	NA	NA	NA	NA
WP_043192344.1\|3908034_3908256_+	hypothetical protein	NA	NA	NA	NA
WP_043192345.1\|3908335_3908548_+	hypothetical protein	NA	NA	NA	NA
WP_043192346.1\|3908595_3908922_+	MliC family protein	NA	NA	NA	NA
WP_043192347.1\|3909028_3910093_+	fructose-bisphosphate aldolase class II	NA	NA	NA	NA
WP_043192348.1\|3910320_3912450_+	EAL domain-containing protein	G3MA91	Bacillus_virus	4.2e-22	34.3
WP_043192349.1\|3912506_3913007_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_043192350.1\|3913018_3913315_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_043192351.1\|3913305_3913776_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_043192352.1\|3913820_3916010_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_043192353.1\|3916266_3917445_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_043192354.1\|3917546_3918932_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.1e-50	32.6
WP_043192355.1\|3918999_3920427_-	multidrug transporter subunit MdtD	A0A0M3UL24	Mycobacterium_phage	4.5e-20	28.3
WP_043192356.1\|3920558_3921887_-\|protease	Zn-dependent protease	NA	NA	NA	NA
WP_043192357.1\|3921883_3923326_-	TldD/PmbA family protein	NA	NA	NA	NA
WP_043192358.1\|3923500_3925207_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	4.8e-53	30.1
WP_043192359.1\|3925297_3926770_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_043192360.1\|3926818_3927412_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_043192361.1\|3927724_3928906_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.0e-25	37.1
WP_043192362.1\|3928902_3929748_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009533

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection