CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009576	Listeria ivanovii subsp. londoniensis strain WSLC 30151 chromosome, complete genome	2 crisprs	DinG,cas3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,csa3,DEDDh,cas14j	0	8	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009576_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009576_1

563867-565964

Unclear

I-A

Consensus_repeat	Method
GTTTTAACTACTTATTGTGAAATGTAAAT	PILER-CR
GTTTTAACTACTTATTGTGAAATGTAAAT	CRISPRCasFinder
GTTTTAACTACTTATTGTGAAATGTAAAT	CRT

32 spacers

cas6,cas8b2,cas7,cas5,cas3,cas4,cas1

The CRISPR arrays of NZ_CP009576_1

>merge|NZ_CP009576|1|563867-565964|PILER-CR,CRISPRCasFinder,CRT
GTTTTAACTACTTATTGTGAAATGTAAATTTTTTTGTGGACAATTTCCATTGGTGATTTGCCGAAGGTTTTAACTACTTATTGTGAAATGTAAATATCGATACAAAGAAAATAAAAAGCATTCCGTATGTTGTTTTAACTACTTATTGTGAAATGTAAATTCAAGCCGGAAGCTGCTAGTACTTCCCCTGATTTCTCGTTTTAACTACTTATTGTGAAATGTAAATTTCATTGGCGCTAATATAAACGCAATTAATAAGACTGTTTTAACTACTTATTGTGAAATGTAAATTTTTTTAAGAACTCGGATAAAGGTTTTATGGAATTTGGTTTTAACTACTTATTGTGAAATGTAAATGTCATTTGAATCAAATTCGCATCTTCCATGATTCGGGTTTTAACTACTTATTGTGAAATGTAAATATTGAAGAGCAATATGCTCCGGAAGAGGACTCTGGGTTTTAACTACTTATTGTGAAATGTAAATGTGATAAATGAACAAGTGAAAGCATCGGTGAAATTAGTTTTAACTACTTATTGTGAAATGTAAATTTTTCAGACTAAGACAGCGGATTTATATCATATTGTTTTAACTACTTATTGTGAAATGTAAATATGAGTTAGAAAAGATGGGAATAAGAACAGAAATTGTTTTAACTACTTATTGTGAAATGTAAATACATAACCTTCTAGTTGATAGTATTTTGTAACAAAGTTTTAACTACTTATTGTGAAATGTAAATAAAGAAATATGCGAGAATCTTTTGCAAATTCCTTGTTTTAACTACTTATTGTGAAATGTAAATAAAGGCTTTCCAGATTTATTCGGATTTCGCGGAACGTTTTAACTACTTATTGTGAAATGTAAATAATTAAAAATGCTAACAAAAAACTTGCGGATATGCTGTTTTAACTACTTATTGTGAAATGTAAATAAGCTAACAATAGACATTGCGACCGCTAAAAAGACAGTTTTAACTACTTATTGTGAAATGTAAATATAAACGAGGGGAAATAGGCAAGTAAACCCCATCAAGTTTTAACTACTTATTGTGAAATGTAAATGCGATACAAACGTTAGAAAAGTCAACGATTATTGCGTTTTAACTACTTATTGTGAAATGTAAATTTTACCTGACTGCCTACCGAAGTCCACTGCGCTGCGTTTTAACTACTTATTGTGAAATGTAAATGTCAAAGCCACTTAGCGCAATAATCTCCGGTGACTTGTTTTAACTACTTATTGTGAAATGTAAATACCACATCCGTTTTAGTAGTTAATGCTGTTGTTGAAGGTTTTAACTACTTATTGTGAAATGTAAATACTGGATATAAAGGTTCTTTCAAGCAAGAGAACATCAGTTTTAACTACTTATTGTGAAATGTAAATTTAGAAGGGGCAAAAATTGAAATTAGAAATTCGCAGTTTTAACTACTTATTGTGAAATGTAAATTTTATTAGTCCGCCAGTCATTGATACTAGTTTTCGTTTTAACTACTTATTGTGAAATGTAAATTCAACTATATGTTTAGTCACTTCGAACTTTTGATTAAGTTTTAACTACTTATTGTGAAATGTAAATGTTTTTAAAATAGCTACATTACTGCTACTAAGTTCGTTTTAACTACTTATTGTGAAATGTAAATGTCTGTATTGCTAGAAAAATAACTGCTCTTGATAGTTTTAACTACTTATTGTGAAATGTAAATTACCTTGCTGGGGAGCTGGATATATTGGCTTTTGGTTTTAACTACTTATTGTGAAATGTAAATTAAGTTAAATTGCTTTCAATTCGCAAATCTTTTAATTGTTTTAACTACTTATTGTGAAATGTAAATCCTCTCGTGAGTTCTATTTTTTGTCTCGCTACTTCGGTTTTAACTACTTATTGTGAAATGTAAATGAAGGATAAAATATTTTAAGAGTAGGTGAAATCCTACGTTTTAACTACTTATTGTGAAATGTAAATAACGATTTGTGTCTTTATTTCGAAAAAGGAAATGAGTTTTAACTACTTATTGTGAAATGTAAATACTGCAGTTGTTTTATAAGTTTTTACCTAGTCAATCGTTTTAACTACTTATTGTGAAATGTAAAT

>NZ_CP009576|1|1|563867-565964|PILER-CR
GTTTTAACTACTTATTGTGAAATGTAAAT	TTTTTTGTGGACAATTTCCATTGGTGATTTGCCGAAG
GTTTTAACTACTTATTGTGAAATGTAAAT	ATCGATACAAAGAAAATAAAAAGCATTCCGTATGTT
GTTTTAACTACTTATTGTGAAATGTAAAT	TCAAGCCGGAAGCTGCTAGTACTTCCCCTGATTTCTC
GTTTTAACTACTTATTGTGAAATGTAAAT	TTCATTGGCGCTAATATAAACGCAATTAATAAGACT
GTTTTAACTACTTATTGTGAAATGTAAAT	TTTTTTAAGAACTCGGATAAAGGTTTTATGGAATTTG
GTTTTAACTACTTATTGTGAAATGTAAAT	GTCATTTGAATCAAATTCGCATCTTCCATGATTCGG
GTTTTAACTACTTATTGTGAAATGTAAAT	ATTGAAGAGCAATATGCTCCGGAAGAGGACTCTGG
GTTTTAACTACTTATTGTGAAATGTAAAT	GTGATAAATGAACAAGTGAAAGCATCGGTGAAATTA
GTTTTAACTACTTATTGTGAAATGTAAAT	TTTTCAGACTAAGACAGCGGATTTATATCATATT
GTTTTAACTACTTATTGTGAAATGTAAAT	ATGAGTTAGAAAAGATGGGAATAAGAACAGAAATT
GTTTTAACTACTTATTGTGAAATGTAAAT	ACATAACCTTCTAGTTGATAGTATTTTGTAACAAA
GTTTTAACTACTTATTGTGAAATGTAAAT	AAAGAAATATGCGAGAATCTTTTGCAAATTCCTT
GTTTTAACTACTTATTGTGAAATGTAAAT	AAAGGCTTTCCAGATTTATTCGGATTTCGCGGAAC
GTTTTAACTACTTATTGTGAAATGTAAAT	AATTAAAAATGCTAACAAAAAACTTGCGGATATGCT
GTTTTAACTACTTATTGTGAAATGTAAAT	AAGCTAACAATAGACATTGCGACCGCTAAAAAGACA
GTTTTAACTACTTATTGTGAAATGTAAAT	ATAAACGAGGGGAAATAGGCAAGTAAACCCCATCAA
GTTTTAACTACTTATTGTGAAATGTAAAT	GCGATACAAACGTTAGAAAAGTCAACGATTATTGC
GTTTTAACTACTTATTGTGAAATGTAAAT	TTTACCTGACTGCCTACCGAAGTCCACTGCGCTGC
GTTTTAACTACTTATTGTGAAATGTAAAT	GTCAAAGCCACTTAGCGCAATAATCTCCGGTGACTT
GTTTTAACTACTTATTGTGAAATGTAAAT	ACCACATCCGTTTTAGTAGTTAATGCTGTTGTTGAAG
GTTTTAACTACTTATTGTGAAATGTAAAT	ACTGGATATAAAGGTTCTTTCAAGCAAGAGAACATCA
GTTTTAACTACTTATTGTGAAATGTAAAT	TTAGAAGGGGCAAAAATTGAAATTAGAAATTCGCA
GTTTTAACTACTTATTGTGAAATGTAAAT	TTTATTAGTCCGCCAGTCATTGATACTAGTTTTC
GTTTTAACTACTTATTGTGAAATGTAAAT	TCAACTATATGTTTAGTCACTTCGAACTTTTGATTAA
GTTTTAACTACTTATTGTGAAATGTAAAT	GTTTTTAAAATAGCTACATTACTGCTACTAAGTTC
GTTTTAACTACTTATTGTGAAATGTAAAT	GTCTGTATTGCTAGAAAAATAACTGCTCTTGATA
GTTTTAACTACTTATTGTGAAATGTAAAT	TACCTTGCTGGGGAGCTGGATATATTGGCTTTTG
GTTTTAACTACTTATTGTGAAATGTAAAT	TAAGTTAAATTGCTTTCAATTCGCAAATCTTTTAATT
GTTTTAACTACTTATTGTGAAATGTAAAT	CCTCTCGTGAGTTCTATTTTTTGTCTCGCTACTTCG
GTTTTAACTACTTATTGTGAAATGTAAAT	GAAGGATAAAATATTTTAAGAGTAGGTGAAATCCTAC
GTTTTAACTACTTATTGTGAAATGTAAAT	AACGATTTGTGTCTTTATTTCGAAAAAGGAAATGA
GTTTTAACTACTTATTGTGAAATGTAAAT	ACTGCAGTTGTTTTATAAGTTTTTACCTAGTCAATC
GTTTTAACTACTTATTGTGAAATGTAAAT

>NZ_CP009576|1|1|563867-565964|CRISPRCasFinder
GTTTTAACTACTTATTGTGAAATGTAAAT	TTTTTTGTGGACAATTTCCATTGGTGATTTGCCGAAG
GTTTTAACTACTTATTGTGAAATGTAAAT	ATCGATACAAAGAAAATAAAAAGCATTCCGTATGTT
GTTTTAACTACTTATTGTGAAATGTAAAT	TCAAGCCGGAAGCTGCTAGTACTTCCCCTGATTTCTC
GTTTTAACTACTTATTGTGAAATGTAAAT	TTCATTGGCGCTAATATAAACGCAATTAATAAGACT
GTTTTAACTACTTATTGTGAAATGTAAAT	TTTTTTAAGAACTCGGATAAAGGTTTTATGGAATTTG
GTTTTAACTACTTATTGTGAAATGTAAAT	GTCATTTGAATCAAATTCGCATCTTCCATGATTCGG
GTTTTAACTACTTATTGTGAAATGTAAAT	ATTGAAGAGCAATATGCTCCGGAAGAGGACTCTGG
GTTTTAACTACTTATTGTGAAATGTAAAT	GTGATAAATGAACAAGTGAAAGCATCGGTGAAATTA
GTTTTAACTACTTATTGTGAAATGTAAAT	TTTTCAGACTAAGACAGCGGATTTATATCATATT
GTTTTAACTACTTATTGTGAAATGTAAAT	ATGAGTTAGAAAAGATGGGAATAAGAACAGAAATT
GTTTTAACTACTTATTGTGAAATGTAAAT	ACATAACCTTCTAGTTGATAGTATTTTGTAACAAA
GTTTTAACTACTTATTGTGAAATGTAAAT	AAAGAAATATGCGAGAATCTTTTGCAAATTCCTT
GTTTTAACTACTTATTGTGAAATGTAAAT	AAAGGCTTTCCAGATTTATTCGGATTTCGCGGAAC
GTTTTAACTACTTATTGTGAAATGTAAAT	AATTAAAAATGCTAACAAAAAACTTGCGGATATGCT
GTTTTAACTACTTATTGTGAAATGTAAAT	AAGCTAACAATAGACATTGCGACCGCTAAAAAGACA
GTTTTAACTACTTATTGTGAAATGTAAAT	ATAAACGAGGGGAAATAGGCAAGTAAACCCCATCAA
GTTTTAACTACTTATTGTGAAATGTAAAT	GCGATACAAACGTTAGAAAAGTCAACGATTATTGC
GTTTTAACTACTTATTGTGAAATGTAAAT	TTTACCTGACTGCCTACCGAAGTCCACTGCGCTGC
GTTTTAACTACTTATTGTGAAATGTAAAT	GTCAAAGCCACTTAGCGCAATAATCTCCGGTGACTT
GTTTTAACTACTTATTGTGAAATGTAAAT	ACCACATCCGTTTTAGTAGTTAATGCTGTTGTTGAAG
GTTTTAACTACTTATTGTGAAATGTAAAT	ACTGGATATAAAGGTTCTTTCAAGCAAGAGAACATCA
GTTTTAACTACTTATTGTGAAATGTAAAT	TTAGAAGGGGCAAAAATTGAAATTAGAAATTCGCA
GTTTTAACTACTTATTGTGAAATGTAAAT	TTTATTAGTCCGCCAGTCATTGATACTAGTTTTC
GTTTTAACTACTTATTGTGAAATGTAAAT	TCAACTATATGTTTAGTCACTTCGAACTTTTGATTAA
GTTTTAACTACTTATTGTGAAATGTAAAT	GTTTTTAAAATAGCTACATTACTGCTACTAAGTTC
GTTTTAACTACTTATTGTGAAATGTAAAT	GTCTGTATTGCTAGAAAAATAACTGCTCTTGATA
GTTTTAACTACTTATTGTGAAATGTAAAT	TACCTTGCTGGGGAGCTGGATATATTGGCTTTTG
GTTTTAACTACTTATTGTGAAATGTAAAT	TAAGTTAAATTGCTTTCAATTCGCAAATCTTTTAATT
GTTTTAACTACTTATTGTGAAATGTAAAT	CCTCTCGTGAGTTCTATTTTTTGTCTCGCTACTTCG
GTTTTAACTACTTATTGTGAAATGTAAAT	GAAGGATAAAATATTTTAAGAGTAGGTGAAATCCTAC
GTTTTAACTACTTATTGTGAAATGTAAAT	AACGATTTGTGTCTTTATTTCGAAAAAGGAAATGA
GTTTTAACTACTTATTGTGAAATGTAAAT	ACTGCAGTTGTTTTATAAGTTTTTACCTAGTCAATC
GTTTTAACTACTTATTGTGAAATGTAAAT

>NZ_CP009576|1|1|563867-565964|CRT
GTTTTAACTACTTATTGTGAAATGTAAAT	TTTTTTGTGGACAATTTCCATTGGTGATTTGCCGAAG
GTTTTAACTACTTATTGTGAAATGTAAAT	ATCGATACAAAGAAAATAAAAAGCATTCCGTATGTT
GTTTTAACTACTTATTGTGAAATGTAAAT	TCAAGCCGGAAGCTGCTAGTACTTCCCCTGATTTCTC
GTTTTAACTACTTATTGTGAAATGTAAAT	TTCATTGGCGCTAATATAAACGCAATTAATAAGACT
GTTTTAACTACTTATTGTGAAATGTAAAT	TTTTTTAAGAACTCGGATAAAGGTTTTATGGAATTTG
GTTTTAACTACTTATTGTGAAATGTAAAT	GTCATTTGAATCAAATTCGCATCTTCCATGATTCGG
GTTTTAACTACTTATTGTGAAATGTAAAT	ATTGAAGAGCAATATGCTCCGGAAGAGGACTCTGG
GTTTTAACTACTTATTGTGAAATGTAAAT	GTGATAAATGAACAAGTGAAAGCATCGGTGAAATTA
GTTTTAACTACTTATTGTGAAATGTAAAT	TTTTCAGACTAAGACAGCGGATTTATATCATATT
GTTTTAACTACTTATTGTGAAATGTAAAT	ATGAGTTAGAAAAGATGGGAATAAGAACAGAAATT
GTTTTAACTACTTATTGTGAAATGTAAAT	ACATAACCTTCTAGTTGATAGTATTTTGTAACAAA
GTTTTAACTACTTATTGTGAAATGTAAAT	AAAGAAATATGCGAGAATCTTTTGCAAATTCCTT
GTTTTAACTACTTATTGTGAAATGTAAAT	AAAGGCTTTCCAGATTTATTCGGATTTCGCGGAAC
GTTTTAACTACTTATTGTGAAATGTAAAT	AATTAAAAATGCTAACAAAAAACTTGCGGATATGCT
GTTTTAACTACTTATTGTGAAATGTAAAT	AAGCTAACAATAGACATTGCGACCGCTAAAAAGACA
GTTTTAACTACTTATTGTGAAATGTAAAT	ATAAACGAGGGGAAATAGGCAAGTAAACCCCATCAA
GTTTTAACTACTTATTGTGAAATGTAAAT	GCGATACAAACGTTAGAAAAGTCAACGATTATTGC
GTTTTAACTACTTATTGTGAAATGTAAAT	TTTACCTGACTGCCTACCGAAGTCCACTGCGCTGC
GTTTTAACTACTTATTGTGAAATGTAAAT	GTCAAAGCCACTTAGCGCAATAATCTCCGGTGACTT
GTTTTAACTACTTATTGTGAAATGTAAAT	ACCACATCCGTTTTAGTAGTTAATGCTGTTGTTGAAG
GTTTTAACTACTTATTGTGAAATGTAAAT	ACTGGATATAAAGGTTCTTTCAAGCAAGAGAACATCA
GTTTTAACTACTTATTGTGAAATGTAAAT	TTAGAAGGGGCAAAAATTGAAATTAGAAATTCGCA
GTTTTAACTACTTATTGTGAAATGTAAAT	TTTATTAGTCCGCCAGTCATTGATACTAGTTTTC
GTTTTAACTACTTATTGTGAAATGTAAAT	TCAACTATATGTTTAGTCACTTCGAACTTTTGATTAA
GTTTTAACTACTTATTGTGAAATGTAAAT	GTTTTTAAAATAGCTACATTACTGCTACTAAGTTC
GTTTTAACTACTTATTGTGAAATGTAAAT	GTCTGTATTGCTAGAAAAATAACTGCTCTTGATA
GTTTTAACTACTTATTGTGAAATGTAAAT	TACCTTGCTGGGGAGCTGGATATATTGGCTTTTG
GTTTTAACTACTTATTGTGAAATGTAAAT	TAAGTTAAATTGCTTTCAATTCGCAAATCTTTTAATT
GTTTTAACTACTTATTGTGAAATGTAAAT	CCTCTCGTGAGTTCTATTTTTTGTCTCGCTACTTCG
GTTTTAACTACTTATTGTGAAATGTAAAT	GAAGGATAAAATATTTTAAGAGTAGGTGAAATCCTAC
GTTTTAACTACTTATTGTGAAATGTAAAT	AACGATTTGTGTCTTTATTTCGAAAAAGGAAATGA
GTTTTAACTACTTATTGTGAAATGTAAAT	ACTGCAGTTGTTTTATAAGTTTTTACCTAGTCAATC
GTTTTAACTACTTATTGTGAAATGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009576.1\|WP_038406687.1\|560306_562127_+\|LapB-repeat-containing-protein	unknown	unknown	gnl\|CDD\|380190
NZ_CP009576.1\|WP_038406695.1\|572409_573198_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NZ_CP009576.1\|WP_038406684.1\|556467_557403_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP009576.1\|WP_038406693.1\|569887_571573_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
NZ_CP009576.1\|WP_038406688.1\|562216_562648_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP009576.1\|WP_052010539.1\|575981_576980_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NZ_CP009576.1\|WP_038406697.1\|575495_575978_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP009576.1\|WP_038406682.1\|555234_555831_+\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238872
NZ_CP009576.1\|WP_003718594.1\|557755_558343_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009576.1\|WP_052010537.1\|566858_568088_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238382
NZ_CP009576.1\|WP_038406694.1\|571562_572432_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NZ_CP009576.1\|WP_038406683.1\|556084_556309_+\|DUF896-domain-containing-protein	unknown	unknown	gnl\|CDD\|226677
NZ_CP009576.1\|WP_038406686.1\|559478_559937_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP009576.1\|WP_003718596.1\|559112_559472_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131113
NZ_CP009576.1\|WP_077916402.1\|566286_566718_-\|DUF1433-domain-containing-protein	unknown	unknown	gnl\|CDD\|284628
NZ_CP009576.1\|WP_038406691.1\|568099_568510_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009576.1\|WP_038406696.1\|573267_575478_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP009576.1\|WP_038406692.1\|569147_569870_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP009576.1\|WP_038406689.1\|562682_563495_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_CP009576.1\|WP_038406685.1\|558412_559093_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212

Protein	Function_ID	Function_description	E-value
NZ_CP009576.1\|WP_038406687.1\|560306_562127_+\|LapB-repeat-containing-protein	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	9.62218e-122
NZ_CP009576.1\|WP_038406695.1\|572409_573198_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	2.70872e-23
NZ_CP009576.1\|WP_038406684.1\|556467_557403_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	2.54698e-154
NZ_CP009576.1\|WP_038406688.1\|562216_562648_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	1.57677e-26
NZ_CP009576.1\|WP_052010539.1\|575981_576980_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	4.20864e-165
NZ_CP009576.1\|WP_038406697.1\|575495_575978_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	2.19135e-61
NZ_CP009576.1\|WP_038406682.1\|555234_555831_+\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238872	cd01834, SGNH_hydrolase_like_2, SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	7.46415e-53
NZ_CP009576.1\|WP_038406693.1\|569887_571573_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	4.52354e-25
NZ_CP009576.1\|WP_052010537.1\|566858_568088_+\|hypothetical-protein	gnl\|CDD\|238382	cd00741, Lipase, Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.	0.000445374
NZ_CP009576.1\|WP_038406694.1\|571562_572432_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	8.67698e-55
NZ_CP009576.1\|WP_038406683.1\|556084_556309_+\|DUF896-domain-containing-protein	gnl\|CDD\|226677	COG4224, COG4224, Uncharacterized protein conserved in bacteria [Function unknown].	2.87246e-24
NZ_CP009576.1\|WP_038406686.1\|559478_559937_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	5.7822e-13
NZ_CP009576.1\|WP_003718596.1\|559112_559472_-\|hypothetical-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	1.46263e-62
NZ_CP009576.1\|WP_077916402.1\|566286_566718_-\|DUF1433-domain-containing-protein	gnl\|CDD\|284628	pfam07252, DUF1433, Protein of unknown function (DUF1433). This family contains a number of hypothetical bacterial proteins of unknown function approximately 100 residues in length.	4.79051e-12
NZ_CP009576.1\|WP_038406696.1\|573267_575478_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.74241e-57
NZ_CP009576.1\|WP_038406692.1\|569147_569870_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	5.04325e-25
NZ_CP009576.1\|WP_038406689.1\|562682_563495_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	2.17011e-46
NZ_CP009576.1\|WP_038406685.1\|558412_559093_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	2.11333e-59

>NZ_CP009576.1|WP_038406689.1|562682_563495_-|histidine-phosphatase-family-protein
MKKNVLKVMVMFCALLLIAGCGNDSTSSKTKTTEKKDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVTSAGKGLKDVDFGAAYSSDSGRAIQTANLILEESAKSSDTKLQTDARFREFNFGSYEGDLNHNMWSDIAKSQGKTLEEWQSAGISPKEFADSIAKLDKTRVKEGENWPAEDYATIQARLKDGITEVAKKESKKGDENVLLVSHGLSIGALLDTIEPGYKLPATGIQNASVTKITYKDGNFKIEDVNDMSYVEKGQE
>NZ_CP009576.1|WP_038406688.1|562216_562648_+|universal-stress-protein
MDKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGTLEEKAELELKGNVNEYAEKARAAGVKQVETFVAKGNPKVLLSTDIPAQFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NZ_CP009576.1|WP_038406687.1|560306_562127_+|LapB-repeat-containing-protein
MKKLFKLLIAIICVVTLTYPTLPVFAEETSSGNSVVNIPDAALKTYLNGQLKQASDADITNDQMALIKSVTISGTNYTDLTGLEAAVNLNTLNISNTNITTLNPIKNQIALTYLSVSGDAITDSFFPDLNQLTNLESINVSSKNVTHNIFEKFNKLPKLRYLYAQNSMLITDISELASLENLDTLFLQFDGIDDFRPLNDFASFKNGKLKALAAFGQNTGRTNPRIALKSGKLDYNAADQTLYLPFSMMPNPLTSFDGTVAPFSKSTSASNTYVGFNDVAVASSRLTITDDGITINGVTKEEFDGLTELEYNARFDFPTGSYPTPPNMSSYTISAGTYDQYFDISHTLDLTADESIGYNQYTPTTEDQFLKDIHAETDDGTAVQSNFDQVVDFNTPGEYMVTLNAENSAGLKANPVEVKVTVYAKPIIKADPSISYEQKTTKTIEAFLTETHSSATENATLTSDFNDVVDLNTPGEYTVTLNAENERGQKADPVQIIVTVTAKVDPEKPVPPTKEKPEPEDKEKPTDNKTVETKEPTKTAEEPKKSVESPSDLTTKENTEATTKEITRTTEQKLPKTGDAGLGTWPVAFTSIMMGFTALILLKKRK
>NZ_CP009576.1|WP_038406686.1|559478_559937_-|winged-helix-turn-helix-transcriptional-regulator
MNNEQSMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERQLLTIEQGTQDKRQRCIFLTPAGKELENELGAAQRKQMAQIFVESSDTNGNYFTEVMEGYAKNRPGAALIKDFKE
>NZ_CP009576.1|WP_003718596.1|559112_559472_-|hypothetical-protein
MEKLLFIQTGFGVDVHGQSITKAAERAVRNAIFTNSMPGIRSQLPENRLENMVVNIKLALPCDADKLDEEVIRAIIPYGTVTIETMTGGMLTTSGIFLEDKEDKNDLMYIVNASVETGY
>NZ_CP009576.1|WP_038406685.1|558412_559093_+|type-1-glutamine-amidotransferase
MLIDVLQHVPHEGPGLIAKWAKENQHQLKMHYLYNKSNQLPTNSEFLVVLGGPMGVNDTAEFPWLKEERDLIKQLINQEKPVFGICLGAQQIATALGSNISINEEKEAGWFPVNRTSTKLPFFSEKLDVFHWHQETFSLPNGATRLFSSEGCVNQGFLYGEKVIGLQFHFEMEKAEIETILQIDEEFITPGKFVQSVVEMRERNVPENNKQMLEAILDYLIAEKNI
>NZ_CP009576.1|WP_003718594.1|557755_558343_+|hypothetical-protein
MEKAFFPVLLVLILLASCSSQNEVLSPNTKIHKNSIIKADYKIPQNLAELESDSEDIVQVKLIRNKEISKGNNGTITEVEIIKNYKGSFELGEKIAISEPWLLTSGEYQAVENYIALEKGQEYILFLNGGHDTDKVSSITSLGYGKYNKTLLEQKNDMNHFHTVGEVQKYDFISDLEEDIIKYQEVKNEVLKKYN
>NZ_CP009576.1|WP_038406684.1|556467_557403_+|ribose-phosphate-pyrophosphokinase
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNANVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIWRAGADRLITVDLHAAQIQGFFNIPIDHLSAVPLIGDYLIEKYGDEDVVVVAPDHSGVVRARRIADRLDAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADVLLEKGAVEVIACATHSVMAGDAIERLQNSPIKEIITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>NZ_CP009576.1|WP_038406683.1|556084_556309_+|DUF896-domain-containing-protein
MKLLLKNINELAAKQKNEGLTDFEKERQAVLRQEYLQKIRGTVQDNLHHVTIIDPLGDDVTPKKLKAIQAELRG
>NZ_CP009576.1|WP_038406682.1|555234_555831_+|SGNH/GDSL-hydrolase-family-protein
MKKKLLFLGDSVTDAGRDFADGYDLGQGYVKYITDSLKAEDVTVLNRGVSANRVVDLHRRLDADAIELAPDVVTILIGINDTWFSFSRWEDTSVTAFKEVYRVILTRIKAETKAEIVLMEPFVLPYPEDRKAWRGDLDPKIGAVRELAAEFGATLIPLDGLMNALAVKHGPTYLAEDGVHPTKSGHEAIASIWLEFTK
>NZ_CP009576.1|WP_077916402.1|566286_566718_-|DUF1433-domain-containing-protein
MKHQEKELMTEQKPRIEKFLNYTYNDIEKITLIGTHTNPTGVVHIEGYVNDNKELWIDAPMDSKNGVEVVDTATELNNNYLKKEFLYESKNVSEIEAEEKAKKKKEKESNTEESSLKTRSVQEIMTDLQSLETSILQNNRHPL
>NZ_CP009576.1|WP_052010537.1|566858_568088_+|hypothetical-protein
MAEFTDEQYFNLADKVYENKVLKRGLLIRLKDGSQWRVINSIDKQGSGLQAVAVVQAKEYKKGKTSYDDAIFVARGSEPNAKQFMKDWIHTDVGKLGIGQKPETDRKLKKAVGQPSQTVADFAKKWSLPGKGIAQLPAWYSNTDNQFYDYQVFVNQTLKDYQIPNYTFTGHSLGGALSQYMGVQKKKKTVTYAAANPFRLLTKEQQEAVENGDFDSLITDYRHRLDPVGKIVPGGMVIGKQFIMDMNSDVSLGSYIFMGHLKGTFAGMFTASGSAKLKVNPDMVIQQARRLDDVLAIMQQTQYRMQDLEEEVAKRSRKLRADLEDDTRKGARFSELTVWDVDEALTERAVKYHGGVYTFHDPAKFEAFYVLNEQQMQRLRGFQEELIQAAQSIREKDISLGDWIAHNQP
>NZ_CP009576.1|WP_038406691.1|568099_568510_+|hypothetical-protein
MYQSTYQRGMEMATGSRSGELLYQAKQLRERLDKGDLSDKERSNLVMAERELIQQAQKIDLKKAVKKGATKIEDVLDEEMDRVQKNYPTVQEDLQAVQVTLKDAFESATGDAVFTWLQTTRTEAIQASREALEASW
>NZ_CP009576.1|WP_038406692.1|569147_569870_+|CRISPR-associated-endoribonuclease-Cas6
MRLRINCDFESNIIPKDYRSKIISLFKTGIEKTVPEKYQAFFGSNQRKNYTFSVYLPKPQNKKMEIYLEEKNCIINFSTGNAETGVIFYNAFMQLKNNKIPFSSQNNITIKSVIMDTEKKIIGEKTVLKTLSPIISRNHHKDTYKNWFYSFENEAFESTLKRNMSPFLEEEFGVQARYDLEKMKITPISMKKVVVYCHDIHIESSVGVFELTAEPYLQKYFLQNGLGTMTGSGFGMIEQL
>NZ_CP009576.1|WP_038406693.1|569887_571573_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MQTEIELKASDWLVNAGIVGFLNIVGKENVRIDGQTMYFSTDVLADFETNYFNYFIREYKETLAWHKIVSYKEKMEYYRAENFASFDEKALEDLNKYVKDVVKFYLKKSNYIKVFPLIDPKANVEEWLGNLSLIKLSKKQILDDGKVELLEEVKETYDQLDVIIDFCASEKGLKYLGAKNLIYSVINNGWSGVSFLYRQTKFIDPYEDYKTTFLDPVFEYLETDLSKAKYNCFICNQPIKTLKLDLSFMNDVGFDTARKTSHVWDFNNDVVTCPICRLIYSCVPAGFTYVYGEGMFVNDSVSIDELYDVNEHMRESILHFNNDGINSVNPYRALVESITMEKEKQRRFDLADIQLVRYENEHYRFNLLSKKMLHILIDSKTILQSLIKCGYKEGNLNINLYKEVIQHLMNNENLFTLIHKLIFYKQTNVSGLYYQTGHVAGILEINTKFLKEVNVLMSEKIDLGKIQFFGKLFKEGYYNKKSENKIPGITYKLLNALKVNDKDGFMDTLLNSYSYLAKPIPRDFIEVFSNKETFKTIGYAFMLGVSGNRLKQEDGGNSDEK
>NZ_CP009576.1|WP_038406694.1|571562_572432_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKNKGLAMTIVFQAESANYGESLGNISALKKISRNNGDQYTYISRQAIRYNLMEQIGEKVAPVKAEGGGDKKVIQFLSEASIADFPELDFFGYLKTEKGTGGQKRSAKVRLSNAISLETFKGDLDFLTNKGQADKINENMNIAQAEIHKSYYRYTITIDLDQIGIDGTVEIDKKEKARRVKKLMDTVAFLYRDIRGRREDLKPLFVIGGVYDVKNPVFQNVVDVLDNKIVIENMEDLLKYNEIGGNTMVGIIDSQFTNTDEVKTRLNAKSVPTFFNEIKEKIDDYYEGN
>NZ_CP009576.1|WP_038406695.1|572409_573198_+|type-I-B-CRISPR-associated-protein-Cas5
MTIMKAIRVKLWQDLVNYKKPTSFQLKETYPLPPYSTVIGMVHTLCGFTSYHEMKISIQGKYFSKVNDLATRYEFKNGMTYDEKRHQIKVDNYGVSRGISTVELLVDLELLLHIIPEDPSLVPVIEKAFKEPIEYPSLGRREDIATIQEVDVVEVEKRKPQENKSVDIYKDYSAYVPISLAESKVVRFKSQESSVGRRELLGTRYLLTEKYERVNHGTEKAPKFFRKWRKKDVIYSSRIFVSKNDVFFLDKDDCLVFIEEEV
>NZ_CP009576.1|WP_038406696.1|573267_575478_+|CRISPR-associated-helicase/endonuclease-Cas3
MQKYLAKSNPPETIQEHTDNLLKNYQTLKELYPEINVDWYLLELVCLLHDLGKMNRLFQKKVGNGSGVGKEIPHGYLSVAFVPYSKLEDLGYSEDEIEVVYQAIARHHERKKDFTEQEWENEIEKLAEQWETFSYKRLADNADYSSEVDPIYFYPGARIFEDDDTVETENFKNYVQLKGLLNRIDFAASAGIDVELENDFLQESMEHQLANFRKKNAAADWNLLQKYMLQHQNENVIVIAETGMGKTEAGLLWLGNNKGFFTLPLRTAINAIYTRIIDEIVTDRQAQRVGLLHSETYSQYLLHEENADMEIDEYYTRTRQMSLPLTICTLDQLFDFVFRYAGFEHKLATLSYSKVIIDEIQMYSPDLLAYLIIGLSYIDKFGGKFCIMTATLPGIVLDLLHDNEVDFIQPEEKFVSKRVRHSVEIVHTEIDSAFIEPFFNGNRILVICNTISKAKKMYAELTSRFPNKKIRLIHSQFIKKDRSKKEEEIFEDGQKANPGECIWVATQVVEASLDIDFDLLFTELSDINGLFQRMGRCYRNRALDVATNVYVFDGGEKVCSGVGQFIDKTIFVNSKEAIKDCSGILTETKKMAIVEQIYSTEALKGTEFYKELTKTLKYVQGFKSYELDKKEVRSQFRNINSVSAIPEKVWQENEDEIVRCMNILGKSSEEVSKKEKMMARTNLAEFMLNIPDYLYNKSEGKPYKINRYENVVEFKCDYSDEIGISMLEKQKESLFF
>NZ_CP009576.1|WP_038406697.1|575495_575978_+|CRISPR-associated-protein-Cas4
MSGTHVYYYFVCKRKLWCFSNEIRMEHLDENVQLGKLLDETSYSRENGQVMIDETVNIDFIKDWKVLHEVKKSRAIEEAGIWQLKYYMYFLKQKGIFIEKGVVDYPKIRQRETIFLSEEDELEIENVLTEIESITKDTKPPKVIDKPLCKKCAYYEYCYI
>NZ_CP009576.1|WP_052010539.1|575981_576980_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MRKIESYYLFSDGELKRKDNVIRLTAPDGRFKDLKVEMTREIFLFGEVNMNTKGLNYIGQLGIPVHIFNYYGFYSGSYYPRETNVSGQLLIAQVEHYTDEKRRLYIASEFIEAASFNLLRNLRYYKQRGKDVLAEMDEIKFLRKSIGKMEDIQALMGIEGNIRKVYYSAWEKIINQEIDFEKRIKRPPDNMINTLISYVNSLVYSSCLTEIYKTQLNPVISYLHSAGERRFSLCLDIAEIFKPLIADRIIFSLLNKNVITEDDFEKEANFCYMNKAARQKVLQAYDLRMKETIKHRDLGRNVSYRHLIRLECYKLVKHLMNDKEYEGFKIWW

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Crispr_ID: NZ_CP009576_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009576_2

577462-579002

Unclear

I-A

Consensus_repeat	Method
GTTTTTAACTACTTATTGTGAAATGTAAAT	PILER-CR
GTTTTTAACTACTTATTGTGAAATGTAAAT	CRISPRCasFinder
GTTTTTAACTACTTATTGTGAAATGTAAAT	CRT

23 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of NZ_CP009576_2

>merge|NZ_CP009576|2|577462-579002|PILER-CR,CRISPRCasFinder,CRT
GTTTTTAACTACTTATTGTGAAATGTAAATGTTGTTGTTGCATTCTTTTTAGTTTCATACTCTACTAGGTTTTTAACTACTTATTGTGAAATGTAAATAATTTATCCGCTATCTTGCGGGCTAGGGGCTGATACGTTTTTAACTACTTATTGTGAAATGTAAATGTTTTTTTGAATGACGAAGTTGAATATAAGCATATGTTTTTAACTACTTATTGTGAAATGTAAATATATTATCAATTAACGCCATCACGATGGCAATTATCGTTTTTAACTACTTATTGTGAAATGTAAATAGATGTTTCCTTATTCTTCCACGCTTTTTCTTTCCGTTTTTAACTACTTATTGTGAAATGTAAATGAGGCTGAGAGCTTGGCATGACTATTTGGTGACATCGTTTTTAACTACTTATTGTGAAATGTAAATATCATATGCTGGGTATGGTAGACTTCTCATCAGAGTTTTTAACTACTTATTGTGAAATGTAAATTTCTAACAGCGAACTGCTTAATTGCTTCCTGTTCGTTTTTAACTACTTATTGTGAAATGTAAATACATTAGTACTCAGCTTCACTTATTTGAGTTACTTGGTTTTTAACTACTTATTGTGAAATGTAAATGGTATCAACGTTCGATAGAATGATTAGATACATTGCGTTTTTAACTACTTATTGTGAAATGTAAATAAGGTATGTCGGATGCCGCACAAGTGATTAACAGTAAGTTTTTAACTACTTATTGTGAAATGTAAATCGAGAAATGGGCTAGGTTCATGGAATATTGTAGACAAGGTTTTTAACTACTTATTGTGAAATGTAAATTTTCCTACTGCGCCGCTGTCACTTCCGCCATGCCCGGTTTTTAACTACTTATTGTGAAATGTAAATACAGCTAATGCTTTTGTAAGCAAGTCTGCATTCCCTGTTTTTAACTACTTATTGTGAAATGTAAATTGCTTCTTTTGCGAACTTTCTGATGTATTTTTTTCGTTTTTAACTACTTATTGTGAAATGTAAATCCAATTGGCCTTCTTGTTCATTAATTGGAGAATACGGTTTTTAACTACTTATTGTGAAATGTAAATAGCTAATTTGGTACCGGGTTTGTACCATTTAATTTTGTTTTTAACTACTTATTGTGAAATGTAAATGCCAACCACGTACTTACTCCGGTTTCCATTTTCGGTTTTTAACTACTTATTGTGAAATGTAAATACGAAACCAGCAAGTAAAACAAAAGAAAAAACAAGTTTTTAACTACTTATTGTGAAATGTAAATTCAGATGAGGAATTAAAACGTGCAGAAAACAGTAGCGTTTTTAACTACTTATTGTGAAATGTAAATGGAGATTGGTTCCGCAAGTATCGCATTTAGCTTTTGTTTTTAACTACTTATTGTGAAATGTAAATCGCAAAAGCGAGGGCATCAGAATTATTTAATTCGAGTTTTTAACTACTTATTGTGAAATGTAAATCAAGGATAATTTGCTATCTATATTCTGTGTATTTTTTGTTTTTAACTACTTATTGTGAAATGTAAAT

>NZ_CP009576|2|2|577462-579002|PILER-CR
GTTTTTAACTACTTATTGTGAAATGTAAAT	GTTGTTGTTGCATTCTTTTTAGTTTCATACTCTACTAG
GTTTTTAACTACTTATTGTGAAATGTAAAT	AATTTATCCGCTATCTTGCGGGCTAGGGGCTGATAC
GTTTTTAACTACTTATTGTGAAATGTAAAT	GTTTTTTTGAATGACGAAGTTGAATATAAGCATAT
GTTTTTAACTACTTATTGTGAAATGTAAAT	ATATTATCAATTAACGCCATCACGATGGCAATTATC
GTTTTTAACTACTTATTGTGAAATGTAAAT	AGATGTTTCCTTATTCTTCCACGCTTTTTCTTTCC
GTTTTTAACTACTTATTGTGAAATGTAAAT	GAGGCTGAGAGCTTGGCATGACTATTTGGTGACATC
GTTTTTAACTACTTATTGTGAAATGTAAAT	ATCATATGCTGGGTATGGTAGACTTCTCATCAGA
GTTTTTAACTACTTATTGTGAAATGTAAAT	TTCTAACAGCGAACTGCTTAATTGCTTCCTGTTC
GTTTTTAACTACTTATTGTGAAATGTAAAT	ACATTAGTACTCAGCTTCACTTATTTGAGTTACTTG
GTTTTTAACTACTTATTGTGAAATGTAAAT	GGTATCAACGTTCGATAGAATGATTAGATACATTGC
GTTTTTAACTACTTATTGTGAAATGTAAAT	AAGGTATGTCGGATGCCGCACAAGTGATTAACAGTAA
GTTTTTAACTACTTATTGTGAAATGTAAAT	CGAGAAATGGGCTAGGTTCATGGAATATTGTAGACAAG
GTTTTTAACTACTTATTGTGAAATGTAAAT	TTTCCTACTGCGCCGCTGTCACTTCCGCCATGCCCG
GTTTTTAACTACTTATTGTGAAATGTAAAT	ACAGCTAATGCTTTTGTAAGCAAGTCTGCATTCCCT
GTTTTTAACTACTTATTGTGAAATGTAAAT	TGCTTCTTTTGCGAACTTTCTGATGTATTTTTTTC
GTTTTTAACTACTTATTGTGAAATGTAAAT	CCAATTGGCCTTCTTGTTCATTAATTGGAGAATACG
GTTTTTAACTACTTATTGTGAAATGTAAAT	AGCTAATTTGGTACCGGGTTTGTACCATTTAATTTT
GTTTTTAACTACTTATTGTGAAATGTAAAT	GCCAACCACGTACTTACTCCGGTTTCCATTTTCG
GTTTTTAACTACTTATTGTGAAATGTAAAT	ACGAAACCAGCAAGTAAAACAAAAGAAAAAACAA
GTTTTTAACTACTTATTGTGAAATGTAAAT	TCAGATGAGGAATTAAAACGTGCAGAAAACAGTAGC
GTTTTTAACTACTTATTGTGAAATGTAAAT	GGAGATTGGTTCCGCAAGTATCGCATTTAGCTTTT
GTTTTTAACTACTTATTGTGAAATGTAAAT	CGCAAAAGCGAGGGCATCAGAATTATTTAATTCGA
GTTTTTAACTACTTATTGTGAAATGTAAAT	CAAGGATAATTTGCTATCTATATTCTGTGTATTTTTT
GTTTTTAACTACTTATTGTGAAATGTAAAT

>NZ_CP009576|2|2|577462-579002|CRISPRCasFinder
GTTTTTAACTACTTATTGTGAAATGTAAAT	GTTGTTGTTGCATTCTTTTTAGTTTCATACTCTACTAG
GTTTTTAACTACTTATTGTGAAATGTAAAT	AATTTATCCGCTATCTTGCGGGCTAGGGGCTGATAC
GTTTTTAACTACTTATTGTGAAATGTAAAT	GTTTTTTTGAATGACGAAGTTGAATATAAGCATAT
GTTTTTAACTACTTATTGTGAAATGTAAAT	ATATTATCAATTAACGCCATCACGATGGCAATTATC
GTTTTTAACTACTTATTGTGAAATGTAAAT	AGATGTTTCCTTATTCTTCCACGCTTTTTCTTTCC
GTTTTTAACTACTTATTGTGAAATGTAAAT	GAGGCTGAGAGCTTGGCATGACTATTTGGTGACATC
GTTTTTAACTACTTATTGTGAAATGTAAAT	ATCATATGCTGGGTATGGTAGACTTCTCATCAGA
GTTTTTAACTACTTATTGTGAAATGTAAAT	TTCTAACAGCGAACTGCTTAATTGCTTCCTGTTC
GTTTTTAACTACTTATTGTGAAATGTAAAT	ACATTAGTACTCAGCTTCACTTATTTGAGTTACTTG
GTTTTTAACTACTTATTGTGAAATGTAAAT	GGTATCAACGTTCGATAGAATGATTAGATACATTGC
GTTTTTAACTACTTATTGTGAAATGTAAAT	AAGGTATGTCGGATGCCGCACAAGTGATTAACAGTAA
GTTTTTAACTACTTATTGTGAAATGTAAAT	CGAGAAATGGGCTAGGTTCATGGAATATTGTAGACAAG
GTTTTTAACTACTTATTGTGAAATGTAAAT	TTTCCTACTGCGCCGCTGTCACTTCCGCCATGCCCG
GTTTTTAACTACTTATTGTGAAATGTAAAT	ACAGCTAATGCTTTTGTAAGCAAGTCTGCATTCCCT
GTTTTTAACTACTTATTGTGAAATGTAAAT	TGCTTCTTTTGCGAACTTTCTGATGTATTTTTTTC
GTTTTTAACTACTTATTGTGAAATGTAAAT	CCAATTGGCCTTCTTGTTCATTAATTGGAGAATACG
GTTTTTAACTACTTATTGTGAAATGTAAAT	AGCTAATTTGGTACCGGGTTTGTACCATTTAATTTT
GTTTTTAACTACTTATTGTGAAATGTAAAT	GCCAACCACGTACTTACTCCGGTTTCCATTTTCG
GTTTTTAACTACTTATTGTGAAATGTAAAT	ACGAAACCAGCAAGTAAAACAAAAGAAAAAACAA
GTTTTTAACTACTTATTGTGAAATGTAAAT	TCAGATGAGGAATTAAAACGTGCAGAAAACAGTAGC
GTTTTTAACTACTTATTGTGAAATGTAAAT	GGAGATTGGTTCCGCAAGTATCGCATTTAGCTTTT
GTTTTTAACTACTTATTGTGAAATGTAAAT	CGCAAAAGCGAGGGCATCAGAATTATTTAATTCGA
GTTTTTAACTACTTATTGTGAAATGTAAAT	CAAGGATAATTTGCTATCTATATTCTGTGTATTTTTT
GTTTTTAACTACTTATTGTGAAATGTAAAT

>NZ_CP009576|2|2|577462-579002|CRT
GTTTTTAACTACTTATTGTGAAATGTAAAT	GTTGTTGTTGCATTCTTTTTAGTTTCATACTCTACTAG
GTTTTTAACTACTTATTGTGAAATGTAAAT	AATTTATCCGCTATCTTGCGGGCTAGGGGCTGATAC
GTTTTTAACTACTTATTGTGAAATGTAAAT	GTTTTTTTGAATGACGAAGTTGAATATAAGCATAT
GTTTTTAACTACTTATTGTGAAATGTAAAT	ATATTATCAATTAACGCCATCACGATGGCAATTATC
GTTTTTAACTACTTATTGTGAAATGTAAAT	AGATGTTTCCTTATTCTTCCACGCTTTTTCTTTCC
GTTTTTAACTACTTATTGTGAAATGTAAAT	GAGGCTGAGAGCTTGGCATGACTATTTGGTGACATC
GTTTTTAACTACTTATTGTGAAATGTAAAT	ATCATATGCTGGGTATGGTAGACTTCTCATCAGA
GTTTTTAACTACTTATTGTGAAATGTAAAT	TTCTAACAGCGAACTGCTTAATTGCTTCCTGTTC
GTTTTTAACTACTTATTGTGAAATGTAAAT	ACATTAGTACTCAGCTTCACTTATTTGAGTTACTTG
GTTTTTAACTACTTATTGTGAAATGTAAAT	GGTATCAACGTTCGATAGAATGATTAGATACATTGC
GTTTTTAACTACTTATTGTGAAATGTAAAT	AAGGTATGTCGGATGCCGCACAAGTGATTAACAGTAA
GTTTTTAACTACTTATTGTGAAATGTAAAT	CGAGAAATGGGCTAGGTTCATGGAATATTGTAGACAAG
GTTTTTAACTACTTATTGTGAAATGTAAAT	TTTCCTACTGCGCCGCTGTCACTTCCGCCATGCCCG
GTTTTTAACTACTTATTGTGAAATGTAAAT	ACAGCTAATGCTTTTGTAAGCAAGTCTGCATTCCCT
GTTTTTAACTACTTATTGTGAAATGTAAAT	TGCTTCTTTTGCGAACTTTCTGATGTATTTTTTTC
GTTTTTAACTACTTATTGTGAAATGTAAAT	CCAATTGGCCTTCTTGTTCATTAATTGGAGAATACG
GTTTTTAACTACTTATTGTGAAATGTAAAT	AGCTAATTTGGTACCGGGTTTGTACCATTTAATTTT
GTTTTTAACTACTTATTGTGAAATGTAAAT	GCCAACCACGTACTTACTCCGGTTTCCATTTTCG
GTTTTTAACTACTTATTGTGAAATGTAAAT	ACGAAACCAGCAAGTAAAACAAAAGAAAAAACAA
GTTTTTAACTACTTATTGTGAAATGTAAAT	TCAGATGAGGAATTAAAACGTGCAGAAAACAGTAGC
GTTTTTAACTACTTATTGTGAAATGTAAAT	GGAGATTGGTTCCGCAAGTATCGCATTTAGCTTTT
GTTTTTAACTACTTATTGTGAAATGTAAAT	CGCAAAAGCGAGGGCATCAGAATTATTTAATTCGA
GTTTTTAACTACTTATTGTGAAATGTAAAT	CAAGGATAATTTGCTATCTATATTCTGTGTATTTTTT
GTTTTTAACTACTTATTGTGAAATGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009576.1\|WP_038406695.1\|572409_573198_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NZ_CP009576.1\|WP_038406705.1\|591701_592706_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NZ_CP009576.1\|WP_038406703.1\|588244_589993_+\|mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|380413
NZ_CP009576.1\|WP_038406698.1\|576984_577263_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP009576.1\|WP_038406701.1\|584884_585754_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP009576.1\|WP_052010539.1\|575981_576980_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NZ_CP009576.1\|WP_038406697.1\|575495_575978_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP009576.1\|WP_052010537.1\|566858_568088_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238382
NZ_CP009576.1\|WP_077916263.1\|585716_587162_+\|glycoside-hydrolase-family-125-protein	unknown	unknown	gnl\|CDD\|377716
NZ_CP009576.1\|WP_038406694.1\|571562_572432_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NZ_CP009576.1\|WP_038406702.1\|587250_588123_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP009576.1\|WP_038406693.1\|569887_571573_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
NZ_CP009576.1\|WP_003721178.1\|580696_581587_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP009576.1\|WP_038406692.1\|569147_569870_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP009576.1\|WP_038406704.1\|590158_591574_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP009576.1\|WP_038406691.1\|568099_568510_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009576.1\|WP_038406696.1\|573267_575478_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP009576.1\|WP_038406699.1\|581589_582426_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP009576.1\|WP_038406700.1\|582441_584871_+\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|212103
NZ_CP009576.1\|WP_003721179.1\|579384_580629_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270452

Protein	Function_ID	Function_description	E-value
NZ_CP009576.1\|WP_038406695.1\|572409_573198_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	2.70872e-23
NZ_CP009576.1\|WP_038406705.1\|591701_592706_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	3.10114e-19
NZ_CP009576.1\|WP_038406703.1\|588244_589993_+\|mannose-6-phosphate-isomerase	gnl\|CDD\|380413	cd07010, cupin_PMI_type_I_N_bac, Phosphomannose isomerase in bacteria and archaea, N-terminal cupin domain. This subfamily contains type I phosphomannose isomerase (PMI; E.C. 5.3.1.8; also known as mannose-6-phosphate isomerase) found in many bacteria (e.g. Bacillus subtilis) and archaea. PMI catalyzes the reversible isomerization of fructose-6-phosphate (F6P) and mannose-6-phosphate (M6P), the first committed step in the synthesis of mannosylated glycoproteins. The active site, located within the N-terminal jelly roll-like beta-barrel cupin fold, contains a single essential zinc atom and forms a deep, open cavity large enough to contain M6P or F6P. PMI type I also has a C-terminal beta-barrel fold which has diverged considerably from the N-terminal domain and is not included here. This subfamily does not contain an alpha helical domain that exists in eukaryotic and some prokaryotic PMIs. F6P is a substrate for glycolysis and gluconeogenesis, while M6P is a substrate for production of activated mannose donor guanosine 5'-diphosphate D-mannose, an important precursor of mannosylated biomolecules such as glycoproteins, bacterial exopolysaccharides and fungal cell wall components. PMI is also essential for survival, virulence and possibly pathogenicity of some bacteria and protozoan parasites, as well as for cell wall integrity of certain yeasts. Thus, PMI is a potential target against fungal infections causing serious illness or death.	1.74404e-54
NZ_CP009576.1\|WP_038406698.1\|576984_577263_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.72008e-28
NZ_CP009576.1\|WP_038406701.1\|584884_585754_+\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	4.23747e-65
NZ_CP009576.1\|WP_052010539.1\|575981_576980_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	4.20864e-165
NZ_CP009576.1\|WP_038406697.1\|575495_575978_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	2.19135e-61
NZ_CP009576.1\|WP_052010537.1\|566858_568088_+\|hypothetical-protein	gnl\|CDD\|238382	cd00741, Lipase, Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.	0.000445374
NZ_CP009576.1\|WP_077916263.1\|585716_587162_+\|glycoside-hydrolase-family-125-protein	gnl\|CDD\|377716	pfam06824, Glyco_hydro_125, Metal-independent alpha-mannosidase (GH125). This family, which contains bacterial and fungal glycoside hydrolases, is also known as GH125. They function as metal-independent alpha-mannosidases, with specificity for alpha-1,6-linked non-reducing terminal mannose residues. Structurally this family is part of the 6 hairpin glycosidase superfamily.	0
NZ_CP009576.1\|WP_038406694.1\|571562_572432_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	8.67698e-55
NZ_CP009576.1\|WP_038406693.1\|569887_571573_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	4.52354e-25
NZ_CP009576.1\|WP_003721178.1\|580696_581587_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	7.53666e-66
NZ_CP009576.1\|WP_038406692.1\|569147_569870_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	5.04325e-25
NZ_CP009576.1\|WP_038406704.1\|590158_591574_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.89164e-81
NZ_CP009576.1\|WP_038406702.1\|587250_588123_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	4.17627e-59
NZ_CP009576.1\|WP_038406696.1\|573267_575478_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.74241e-57
NZ_CP009576.1\|WP_038406699.1\|581589_582426_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.33142e-61
NZ_CP009576.1\|WP_038406700.1\|582441_584871_+\|glycosyl-hydrolase	gnl\|CDD\|212103	cd10791, GH38N_AMII_like_1, N-terminal catalytic domain of mainly uncharacterized eukaryotic proteins similar to alpha-mannosidases; glycoside hydrolase family 38 (GH38). The subfamily of mainly uncharacterized eukaryotic proteins shows sequence homology with class II alpha-mannosidases (AlphaAMIIs). AlphaAMIIs possess a-1,3, a-1,6, and a-1,2 hydrolytic activity, and catalyze the degradation of N-linked oligosaccharides. The N-terminal catalytic domain of alphaMII adopts a structure consisting of parallel 7-stranded beta/alpha barrel. This subfamily belongs to the GH38 family of retaining glycosyl hydrolases, which employ a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst.	5.53911e-86
NZ_CP009576.1\|WP_003721179.1\|579384_580629_+\|extracellular-solute-binding-protein	gnl\|CDD\|270452	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold. This group represents the periplasmic component of an ABC transport system XBP1 that shows preference for xylo-oligosaccharides in the order of xylotriose > xylobiose > xylotetraose. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.09542e-37

>NZ_CP009576.1|WP_038406698.1|576984_577263_+|CRISPR-associated-endonuclease-Cas2
MYVILIYDISVESGGAKVWRNVFKICKRYLTHVQKSVFEGEITPALLVKLRMELDNYIRQDVDSVILFSSRQQKWLEKEFWGLADEKTSNFF
>NZ_CP009576.1|WP_052010539.1|575981_576980_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MRKIESYYLFSDGELKRKDNVIRLTAPDGRFKDLKVEMTREIFLFGEVNMNTKGLNYIGQLGIPVHIFNYYGFYSGSYYPRETNVSGQLLIAQVEHYTDEKRRLYIASEFIEAASFNLLRNLRYYKQRGKDVLAEMDEIKFLRKSIGKMEDIQALMGIEGNIRKVYYSAWEKIINQEIDFEKRIKRPPDNMINTLISYVNSLVYSSCLTEIYKTQLNPVISYLHSAGERRFSLCLDIAEIFKPLIADRIIFSLLNKNVITEDDFEKEANFCYMNKAARQKVLQAYDLRMKETIKHRDLGRNVSYRHLIRLECYKLVKHLMNDKEYEGFKIWW
>NZ_CP009576.1|WP_038406697.1|575495_575978_+|CRISPR-associated-protein-Cas4
MSGTHVYYYFVCKRKLWCFSNEIRMEHLDENVQLGKLLDETSYSRENGQVMIDETVNIDFIKDWKVLHEVKKSRAIEEAGIWQLKYYMYFLKQKGIFIEKGVVDYPKIRQRETIFLSEEDELEIENVLTEIESITKDTKPPKVIDKPLCKKCAYYEYCYI
>NZ_CP009576.1|WP_038406696.1|573267_575478_+|CRISPR-associated-helicase/endonuclease-Cas3
MQKYLAKSNPPETIQEHTDNLLKNYQTLKELYPEINVDWYLLELVCLLHDLGKMNRLFQKKVGNGSGVGKEIPHGYLSVAFVPYSKLEDLGYSEDEIEVVYQAIARHHERKKDFTEQEWENEIEKLAEQWETFSYKRLADNADYSSEVDPIYFYPGARIFEDDDTVETENFKNYVQLKGLLNRIDFAASAGIDVELENDFLQESMEHQLANFRKKNAAADWNLLQKYMLQHQNENVIVIAETGMGKTEAGLLWLGNNKGFFTLPLRTAINAIYTRIIDEIVTDRQAQRVGLLHSETYSQYLLHEENADMEIDEYYTRTRQMSLPLTICTLDQLFDFVFRYAGFEHKLATLSYSKVIIDEIQMYSPDLLAYLIIGLSYIDKFGGKFCIMTATLPGIVLDLLHDNEVDFIQPEEKFVSKRVRHSVEIVHTEIDSAFIEPFFNGNRILVICNTISKAKKMYAELTSRFPNKKIRLIHSQFIKKDRSKKEEEIFEDGQKANPGECIWVATQVVEASLDIDFDLLFTELSDINGLFQRMGRCYRNRALDVATNVYVFDGGEKVCSGVGQFIDKTIFVNSKEAIKDCSGILTETKKMAIVEQIYSTEALKGTEFYKELTKTLKYVQGFKSYELDKKEVRSQFRNINSVSAIPEKVWQENEDEIVRCMNILGKSSEEVSKKEKMMARTNLAEFMLNIPDYLYNKSEGKPYKINRYENVVEFKCDYSDEIGISMLEKQKESLFF
>NZ_CP009576.1|WP_038406695.1|572409_573198_+|type-I-B-CRISPR-associated-protein-Cas5
MTIMKAIRVKLWQDLVNYKKPTSFQLKETYPLPPYSTVIGMVHTLCGFTSYHEMKISIQGKYFSKVNDLATRYEFKNGMTYDEKRHQIKVDNYGVSRGISTVELLVDLELLLHIIPEDPSLVPVIEKAFKEPIEYPSLGRREDIATIQEVDVVEVEKRKPQENKSVDIYKDYSAYVPISLAESKVVRFKSQESSVGRRELLGTRYLLTEKYERVNHGTEKAPKFFRKWRKKDVIYSSRIFVSKNDVFFLDKDDCLVFIEEEV
>NZ_CP009576.1|WP_038406694.1|571562_572432_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKNKGLAMTIVFQAESANYGESLGNISALKKISRNNGDQYTYISRQAIRYNLMEQIGEKVAPVKAEGGGDKKVIQFLSEASIADFPELDFFGYLKTEKGTGGQKRSAKVRLSNAISLETFKGDLDFLTNKGQADKINENMNIAQAEIHKSYYRYTITIDLDQIGIDGTVEIDKKEKARRVKKLMDTVAFLYRDIRGRREDLKPLFVIGGVYDVKNPVFQNVVDVLDNKIVIENMEDLLKYNEIGGNTMVGIIDSQFTNTDEVKTRLNAKSVPTFFNEIKEKIDDYYEGN
>NZ_CP009576.1|WP_038406693.1|569887_571573_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MQTEIELKASDWLVNAGIVGFLNIVGKENVRIDGQTMYFSTDVLADFETNYFNYFIREYKETLAWHKIVSYKEKMEYYRAENFASFDEKALEDLNKYVKDVVKFYLKKSNYIKVFPLIDPKANVEEWLGNLSLIKLSKKQILDDGKVELLEEVKETYDQLDVIIDFCASEKGLKYLGAKNLIYSVINNGWSGVSFLYRQTKFIDPYEDYKTTFLDPVFEYLETDLSKAKYNCFICNQPIKTLKLDLSFMNDVGFDTARKTSHVWDFNNDVVTCPICRLIYSCVPAGFTYVYGEGMFVNDSVSIDELYDVNEHMRESILHFNNDGINSVNPYRALVESITMEKEKQRRFDLADIQLVRYENEHYRFNLLSKKMLHILIDSKTILQSLIKCGYKEGNLNINLYKEVIQHLMNNENLFTLIHKLIFYKQTNVSGLYYQTGHVAGILEINTKFLKEVNVLMSEKIDLGKIQFFGKLFKEGYYNKKSENKIPGITYKLLNALKVNDKDGFMDTLLNSYSYLAKPIPRDFIEVFSNKETFKTIGYAFMLGVSGNRLKQEDGGNSDEK
>NZ_CP009576.1|WP_038406692.1|569147_569870_+|CRISPR-associated-endoribonuclease-Cas6
MRLRINCDFESNIIPKDYRSKIISLFKTGIEKTVPEKYQAFFGSNQRKNYTFSVYLPKPQNKKMEIYLEEKNCIINFSTGNAETGVIFYNAFMQLKNNKIPFSSQNNITIKSVIMDTEKKIIGEKTVLKTLSPIISRNHHKDTYKNWFYSFENEAFESTLKRNMSPFLEEEFGVQARYDLEKMKITPISMKKVVVYCHDIHIESSVGVFELTAEPYLQKYFLQNGLGTMTGSGFGMIEQL
>NZ_CP009576.1|WP_038406691.1|568099_568510_+|hypothetical-protein
MYQSTYQRGMEMATGSRSGELLYQAKQLRERLDKGDLSDKERSNLVMAERELIQQAQKIDLKKAVKKGATKIEDVLDEEMDRVQKNYPTVQEDLQAVQVTLKDAFESATGDAVFTWLQTTRTEAIQASREALEASW
>NZ_CP009576.1|WP_052010537.1|566858_568088_+|hypothetical-protein
MAEFTDEQYFNLADKVYENKVLKRGLLIRLKDGSQWRVINSIDKQGSGLQAVAVVQAKEYKKGKTSYDDAIFVARGSEPNAKQFMKDWIHTDVGKLGIGQKPETDRKLKKAVGQPSQTVADFAKKWSLPGKGIAQLPAWYSNTDNQFYDYQVFVNQTLKDYQIPNYTFTGHSLGGALSQYMGVQKKKKTVTYAAANPFRLLTKEQQEAVENGDFDSLITDYRHRLDPVGKIVPGGMVIGKQFIMDMNSDVSLGSYIFMGHLKGTFAGMFTASGSAKLKVNPDMVIQQARRLDDVLAIMQQTQYRMQDLEEEVAKRSRKLRADLEDDTRKGARFSELTVWDVDEALTERAVKYHGGVYTFHDPAKFEAFYVLNEQQMQRLRGFQEELIQAAQSIREKDISLGDWIAHNQP
>NZ_CP009576.1|WP_003721179.1|579384_580629_+|extracellular-solute-binding-protein
MKKIVPISCIVAVLMLLASCGSGDASSSKVEFYTDKGGENVGILNSMSDQIEKDGGVGYKTVGYTEVTSYETTVQQSLDSDKAPGLFTWWSGDKLKKLVDNDLAVDLTKEWKDYYEKEGVNPGLADAFTIDGKVYAAPFSVLYNGIIYNKHLFDKYNLEVPKTWDEFIKVCDTLKANKIDPIGLKNDPWASFLWFQTLIASYDPDLYVGLTNGDIKYTDPEMKKVMKIWQKMIKKGYFGDPVDPASQAKMFSTDKSAMIYEPSVTSATLKKEYNMEPGKDFDVFVAPSMKADQKQVIFFEASPIVVSKKSQQSTDAKKVLRSFYKKDVQQIFVDEAGIINTDKTKSDDPVNGSFVKEAGNTDKYQVMVRYYEATPSEVVTVATDELWKFFYKPTDAVLDDTLNTIQKTADSAFN
>NZ_CP009576.1|WP_003721178.1|580696_581587_+|sugar-ABC-transporter-permease
MSLQAKANLKRGGGLKPYLYIAPAVLFVFCFCILSIIFTLFISFTDWSGLGSFKFVGFDNYIAVFQDKNFLLSSINTLVWVAAGLIIPVVLPLLFAIAIIKSSFATIFKNLFYFPNAVSGVIVGLIMTSLLSMYGLPQLLGMLGFENLDKNWLNIPYVNTGVMIVAGIWQGIGLNMLLFIIGLVNMPSEPIEAAKLEGASGLTLYTKIILPLLKPTIVVVVLMSLVNSFKTFDSIWVMTGGGPYRTSETLAVTMYKESFSNNHLGMGSAIAVMLSVIILVISIFYLRKTFTKEGSN
>NZ_CP009576.1|WP_038406699.1|581589_582426_+|carbohydrate-ABC-transporter-permease
MIQEKHAGVGKWTVNIILIILAIIWVFPFLYVIVNAVKSSAEYSTGNFWDLPKSFSIAENWEYLTQQIQLGSGFINSIIYGALGGGLGIIMAALAAYAIETLKIKHGLLWFFVIYSGTIFPFQVYLIPIFKAYNKVGLYDTRVGMILIYAALIIPFSVFVLRNFLMGISKEMLESARMDGASDFYIFRKIYMPMARAPLAAVFLFQFTWIWSDLLFGMTLTKSESARPVMAAVSLLGGSTIQKVPPILLAAIIVSIPTIVLFILSHRNLEKGFIMTTK
>NZ_CP009576.1|WP_038406700.1|582441_584871_+|glycosyl-hydrolase
MALSKKWKLYVLHHSHTDIGYTERQEKLKRYHVDFIQQAINILTEIENGNRPEWEGFRWVCENYWQVENFLKNSNEENIACFERYVQAGLIDISLNYLNMTELVDDDVLNHKLAQGRSYADHLAVPLDSAMTADINGYSWGYADALANNGIENLFSCIHTHHGMFPLGKKHQGFWWEGPSGERVLTWVSDHYHIGNELCLVPDHGITYLLEERFNANAEVADFKVAEERIFSYIEKLDEDEEYDYHFVPVMVSGMSTDNGAPNGQILERVRAWNDLHGEQIEIEMITLNHFFEILREEMNELPVYRGDWNDWWADGVGSTPAVVKHYKDAQRKYHIGKQLAPEFVAADKQYLDEVEYELTLYAEHTWGYSSSVTEPWETLVNDLDFRKSAYAIRANQLASLKLDQILAAKGEVTIRPDREKLFKVINPQAVARTDSVCLYIEHWEDVEGAGVDILLQNIEVVDEATGEILPSQVREIARAKEVEVVLELAGLEERILRVRLKKKLQKEAYRYLAADKVKDIMYDGWQEGLRMNAHQIETKYYSITLDETKGIVAMKDKLDGKSLLRDNLEHAPFAGIYERTTTEPNAWEVRHTMGRNRKKMNTNRYVSKLRDIQVGGSGDVSGTIIFSYDLEGTQMYEVHMKVYRDTPKIDVTLRLHKDSIWDPENLYISFPFTTGTTEELYFDKTGCLVRPGIDQLPGTNQEFYLVQEGAAYVGTEKSIILALKDTPLLVLGDLKHHLIELTGQGKTEKNKEPLYVWLMNNFWETNFKVDLAGFYEFRYTLATLQTNQADVAVAACKSYNQGFLSMYI
>NZ_CP009576.1|WP_038406701.1|584884_585754_+|ROK-family-protein
MYRIGIDVGATNMRVALFDSNNQLVAREQVKTEAVLGPAQALEKLVGMIGQVDPKGLAIGVGIGAPGPLDITNGMVLDAPNLPGWHGFRIRDELANRIGTPVSLINDAKAAALAEARMGAGIGFSTVQYITISTGIGGGFVCDGEIFSGSHGHASEVGNMVVNASLLNGTLENICSGSALLRVSKQLFGEDKTATELFVQYEANQEEACQVVEDWLYHFSAGLTSIIQVIDPEVFVLGGAVVLNHPWLVEKLYPIITKQVYSTMRENIQLKIASLGDDAGLYGAALLVK
>NZ_CP009576.1|WP_077916263.1|585716_587162_+|glycoside-hydrolase-family-125-protein
MQDFTGLRYLLSERNGGILENNTSLDKELMGDDTYIRLQQITAEIVKEAASDNTELATLIDGAIDQILQQGNLSEKLQRMFRKCMLNTITTTLVQKQDDSAFLITGDIPAMWLRDSGGQLRVFLNLDDPSGKLYDVIRAVIRQQFRYVQLDPYTNAFNFTGNGNSWSDIDRSERKNPWSWERKYELDSLCFPVELAYFYWKRTKRVDLFDEDFLTAVKVLIDVFRVEQHHEEKSEYFFIRDNGIEQDSLPNQGRGTKVGYTGMIWSGFRPSDDACEYGYLLPANMFAVVILGYLEEIMTTFYPEERVLLTTITKIKEEVQQGIEKFGIIDHPTHGKIYAYEVDGLGNSNLMDDTGVPSLLSLPYIKYCDTDEAIYQNTRRFSLSKDNQYYFEGAAAKGLGSPHTPPEYVWHMGLAIQGLTSTDQTECQELLCLFETTDAGTDLTHEGFLADDPTIYTRDWFSWSNSIFCEFILKEMGKLKL
>NZ_CP009576.1|WP_038406702.1|587250_588123_+|MurR/RpiR-family-transcriptional-regulator
MKSGIVQLQAMAKQSMGSYQDIAKYIIANAETVKTMHITRLAEACFTSPATIVRMCKKLGYKGFTDFKQDLVLNLHKWFFEKQEVYNRGYIYPNKAAIEIGEVITNLTINGMIKSVQFLDSELVTDLAKILYEAEQIDFYGCGISNLVAQDFSYRFLRSGKSTSAFADSHIQISQAQQSGAGCVAVGISYSGETQEVITALEIAKQLGAYTISFTSEEDNSLAQVAACNITVAQIEHPEGYVAAASRIEMLHVMDIIYSVYISTYDETIAAKIARTRPYFKKKNEDMEQD
>NZ_CP009576.1|WP_038406703.1|588244_589993_+|mannose-6-phosphate-isomerase
MRNNEMRYNHSPTTTVKGDFKTWTGFQTICLELSTVLAKYSKKNTVLVIETYPGVRIETLRAALDKYFEGATIFCADDFAMNGQEIQEKFAMLITEDRVFGRMAAIKVEDYYEKSKLELLRNKLTVTEGLTIVFGTGASLAVEADLTVYVDVARWEIQQRMRSGEIGNWNDTNLDEDILRKYKRGFFLDWRAADRLKVELFDKIDYYVDDNELNNPKMVHWSAYCSALEQMLQGPFRFVPYFDPGVWGGQWMKKNLGLDAKASNFAWAFDGVAEENSLYLQFGEVRVETPAINAVLKYPMELLGELVYSRFGAELPIRFDFLDTMDGQNLSLQVHPNKEYIKKQFGMDYTQEESYYLLDAKNDAVVYLGMKDGVKPTEFIGALEEAQTGEVSLDAARYINTIPAKKHDHFLIPSGTVHCSGADSMILEISLCAYIFTFKLWDWGRLGLDAKPRPVHIDHGEKVINWNRPEKWVAENLVNQLEPLIKTKTHTKERTGLYKTEQIYTERDWFTDFVDYDNSEQTVNMLNLVEGDKVVVESLDDSFEAFEVHYVETFVIPAQIKRFRISNVGESERVAILRARIM
>NZ_CP009576.1|WP_038406704.1|590158_591574_+|multidrug-efflux-MFS-transporter
MQQERAMERKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAAISPTFAMLMVGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGIKYMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGENGWGSATVLTAIIVGGISLALFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFVVAVIALFFLTRIETDTTALTIIILHSVLMIGISMVMMPAQTNGLNQLPRKLYPDGTAIMNTLQQVSGAIGTAVAITIMTAGQKAYMETAQGAGPEEMVASLTAGIQNAFVFGLIMACIGLVCSLFIRKAK
>NZ_CP009576.1|WP_038406705.1|591701_592706_+|ROK-family-transcriptional-regulator
MALPRDLKELNKRHIKSILRQRGAMTKAEIAEITDLSVVTVNKLIRALEEDDEIIEQDSSVVTGGRRAISYKINPNFQQILVVSLQEKWKKITYSFSVYNLLGEVEFVEDMSGEDLDIHALKRNIKDHVCAFPKISCIVIGVPGIEIGGRLRAMDFPLLLNVHLRETLESEVNLPVLVETDTNAAILGYKNRPVTENNIVGLYYPERFPPGAGLLMNGEILKGKNGLAGEIKYIPLQIDWDNFDFSVDKIKEHIRKMVLLTMSFYDPETIVIYTNFYFGQKDFMEELTLSLAEIYPYARLPKILLSRKFTTDYRIGLFAFGIDYLENNLTDWRI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009576_1	1.9\|564418\|34\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564418-564451	34	NC_003216	Listeria phage A118, complete genome	15119-15152	0	1.0
NZ_CP009576_1	1.9\|564418\|34\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564418-564451	34	AJ242593	Bacteriophage A118 complete genome	15119-15152	0	1.0
NZ_CP009576_1	1.13\|564672\|35\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564672-564706	35	NC_021539	Listeria phage LP-030-2, complete genome	35534-35568	0	1.0
NZ_CP009576_1	1.13\|564672\|35\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564672-564706	35	NC_009812	Listeria phage B025, complete genome	40354-40388	0	1.0
NZ_CP009576_1	1.30\|565770\|37\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	565770-565806	37	MT500540	Listeria phage LP-HM00113468, complete genome	37595-37631	0	1.0
NZ_CP009576_1	1.23\|565320\|34\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	565320-565353	34	MH341451	Listeria phage PSU-VKH-LP019, complete genome	10649-10682	1	0.971
NZ_CP009576_1	1.23\|565320\|34\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	565320-565353	34	KP399677	Listeria phage vB_LmoS_188, complete genome	10652-10685	1	0.971
NZ_CP009576_1	1.23\|565320\|34\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	565320-565353	34	DQ003642	Listeria phage A006, complete genome	10665-10698	1	0.971
NZ_CP009576_1	1.30\|565770\|37\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	565770-565806	37	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	216847-216883	1	0.973
NZ_CP009576_1	1.30\|565770\|37\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	565770-565806	37	NC_009812	Listeria phage B025, complete genome	7281-7317	1	0.973
NZ_CP009576_1	1.30\|565770\|37\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	565770-565806	37	KJ094023	Listeria phage LP-101, complete genome	7320-7356	1	0.973
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	KX581091	Vibrio phage Cla, complete genome	39680-39715	8	0.778
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	KX581096	Vibrio phage pVa-5, complete genome	39681-39716	8	0.778
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	MK672804	Vibrio phage Va_178/90_p41, complete genome	2770-2805	8	0.778
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	KY658673	Vibrio phage H2 PGK-2017, complete genome	32603-32638	8	0.778
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	KX581093	Vibrio phage Pel, complete genome	39681-39716	8	0.778
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	KX581097	Vibrio phage pVa-6, complete genome	39681-39716	8	0.778
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	KY658677	Vibrio phage P3, complete genome	39696-39731	8	0.778
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	KY658674	Vibrio phage H8, complete genome	32611-32646	8	0.778
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	KY658676	Vibrio phage P2, complete genome	32603-32638	8	0.778
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	KX581090	Vibrio phage Her, complete genome	39680-39715	8	0.778
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	KY658678	Vibrio phage pVa-3, complete genome	40798-40833	8	0.778
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	KY658679	Vibrio phage pVa-4, complete genome	40749-40784	8	0.778
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	MK672800	Vibrio phage Va_90-11-287_p41_Ba35, complete genome	31583-31618	8	0.778
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	MK672799	Vibrio phage Va_90-11-287_p41, complete genome	31583-31618	8	0.778
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	KX581092	Vibrio phage Len, complete genome	39680-39715	8	0.778
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	KX581094	Vibrio phage pVa-2, complete genome	39680-39715	8	0.778
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	MK672803	Vibrio phage Va_91-7-154_p41, complete genome	13028-13063	8	0.778
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	KY658680	Vibrio phage pVa-8, complete genome	39681-39716	8	0.778
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	KY658675	Vibrio phage H20, complete genome	39679-39714	8	0.778
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	KX581095	Vibrio phage pVa-1, complete genome	39681-39716	8	0.778
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	KX581099	Vibrio phage Strym, complete genome	39680-39715	8	0.778
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	MK672801	Vibrio phage Va_90-11-287_p41_T265, complete genome	31583-31618	8	0.778
NZ_CP009576_1	1.8\|564353\|36\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564353-564388	36	KX581100	Vibrio phage pVa-7, complete genome	40722-40757	8	0.778
NZ_CP009576_1	1.13\|564672\|35\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564672-564706	35	MG788324	Lactobacillus phage PM411, complete genome	22444-22478	8	0.771
NZ_CP009576_1	1.12\|564609\|34\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564609-564642	34	JN638751	Bacillus phage G, complete genome	112254-112287	9	0.735
NZ_CP009576_1	1.12\|564609\|34\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564609-564642	34	MG945709	UNVERIFIED: Microviridae sp. isolate 1866-1801, complete genome	1695-1728	9	0.735
NZ_CP009576_1	1.13\|564672\|35\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564672-564706	35	MK448754	Streptococcus phage Javan411, complete genome	10969-11003	9	0.743
NZ_CP009576_1	1.13\|564672\|35\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	564672-564706	35	MK448929	Streptococcus phage Javan400, complete genome	10969-11003	9	0.743
NZ_CP009576_2	2.19\|578676\|34\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	578676-578709	34	NZ_AP014866	Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK2, complete sequence	196040-196073	9	0.735
NZ_CP009576_2	2.19\|578676\|34\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	578676-578709	34	CP020756	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-17, complete sequence	39825-39858	9	0.735
NZ_CP009576_2	2.19\|578676\|34\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	578676-578709	34	NC_014937	Bacillus thuringiensis CT43 plasmid pBMB0558, complete sequence	48851-48884	9	0.735
NZ_CP009576_2	2.19\|578676\|34\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	578676-578709	34	NC_017202	Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT127, complete sequence	49620-49653	9	0.735
NZ_CP009576_2	2.19\|578676\|34\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	578676-578709	34	NC_020393	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-107, complete sequence	30088-30121	9	0.735
NZ_CP009576_2	2.19\|578676\|34\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	578676-578709	34	NZ_CP021063	Bacillus thuringiensis strain ATCC 10792 plasmid poh2, complete sequence	98469-98502	9	0.735
NZ_CP009576_1	1.26\|565513\|34\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	565513-565546	34	NZ_CP043522	Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_10, complete sequence	6002-6035	10	0.706
NZ_CP009576_1	1.26\|565513\|34\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	565513-565546	34	NZ_CP016751	Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1E, complete sequence	1370-1403	10	0.706
NZ_CP009576_1	1.26\|565513\|34\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	565513-565546	34	NC_017498	Lactococcus lactis plasmid pSK11A, complete sequence	1814-1847	10	0.706
NZ_CP009576_1	1.26\|565513\|34\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	565513-565546	34	NC_015860	Lactococcus lactis subsp. lactis plasmid pIL1, complete sequence	1698-1731	10	0.706
NZ_CP009576_1	1.26\|565513\|34\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	565513-565546	34	NZ_CP016710	Lactococcus lactis subsp. cremoris strain UC109 plasmid pUC109D, complete sequence	1371-1404	10	0.706
NZ_CP009576_1	1.26\|565513\|34\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	565513-565546	34	NZ_CP016710	Lactococcus lactis subsp. cremoris strain UC109 plasmid pUC109D, complete sequence	6430-6463	10	0.706
NZ_CP009576_1	1.26\|565513\|34\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	565513-565546	34	NC_008504	Lactococcus lactis subsp. cremoris SK11 plasmid 2, complete sequence	8470-8503	10	0.706
NZ_CP009576_1	1.26\|565513\|34\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	565513-565546	34	NC_019430	Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS8, complete sequence	52027-52060	10	0.706
NZ_CP009576_1	1.26\|565513\|34\|NZ_CP009576\|PILER-CR,CRISPRCasFinder,CRT	565513-565546	34	NZ_CP016739	Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3C, complete sequence	11364-11397	10	0.706

1. spacer 1.9|564418|34|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

ttttcagactaagacagcggatttatatcatatt	CRISPR spacer
ttttcagactaagacagcggatttatatcatatt	Protospacer
**********************************

2. spacer 1.9|564418|34|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

ttttcagactaagacagcggatttatatcatatt	CRISPR spacer
ttttcagactaagacagcggatttatatcatatt	Protospacer
**********************************

3. spacer 1.13|564672|35|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 0, identity: 1.0

aaaggctttccagatttattcggatttcgcggaac	CRISPR spacer
aaaggctttccagatttattcggatttcgcggaac	Protospacer
***********************************

4. spacer 1.13|564672|35|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 0, identity: 1.0

aaaggctttccagatttattcggatttcgcggaac	CRISPR spacer
aaaggctttccagatttattcggatttcgcggaac	Protospacer
***********************************

5. spacer 1.30|565770|37|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 0, identity: 1.0

gaaggataaaatattttaagagtaggtgaaatcctac	CRISPR spacer
gaaggataaaatattttaagagtaggtgaaatcctac	Protospacer
*************************************

6. spacer 1.23|565320|34|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 1, identity: 0.971

tttattagtccgccagtcattgatactagttttc	CRISPR spacer
tttattaatccgccagtcattgatactagttttc	Protospacer
*******.**************************

7. spacer 1.23|565320|34|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 1, identity: 0.971

tttattagtccgccagtcattgatactagttttc	CRISPR spacer
tttattagtccgctagtcattgatactagttttc	Protospacer
*************.********************

8. spacer 1.23|565320|34|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.971

tttattagtccgccagtcattgatactagttttc	CRISPR spacer
tttattaatccgccagtcattgatactagttttc	Protospacer
*******.**************************

9. spacer 1.30|565770|37|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.973

gaaggataaaatattttaagagtaggtgaaatcctac	CRISPR spacer
gaaggataaaatattttaagagtaggtgaactcctac	Protospacer
****************************** ******

10. spacer 1.30|565770|37|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 1, identity: 0.973

gaaggataaaatattttaagagtaggtgaaatcctac	CRISPR spacer
gaaggataaaaaattttaagagtaggtgaaatcctac	Protospacer
*********** *************************

11. spacer 1.30|565770|37|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.973

gaaggataaaatattttaagagtaggtgaaatcctac	CRISPR spacer
gaaggataaaatattttaagagtaggtgaactcctac	Protospacer
****************************** ******

12. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to KX581091 (Vibrio phage Cla, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

13. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to KX581096 (Vibrio phage pVa-5, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

14. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to MK672804 (Vibrio phage Va_178/90_p41, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

15. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to KY658673 (Vibrio phage H2 PGK-2017, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

16. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to KX581093 (Vibrio phage Pel, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

17. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to KX581097 (Vibrio phage pVa-6, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

18. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to KY658677 (Vibrio phage P3, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

19. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to KY658674 (Vibrio phage H8, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

20. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to KY658676 (Vibrio phage P2, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

21. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to KX581090 (Vibrio phage Her, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

22. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to KY658678 (Vibrio phage pVa-3, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

23. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to KY658679 (Vibrio phage pVa-4, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

24. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to MK672800 (Vibrio phage Va_90-11-287_p41_Ba35, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

25. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to MK672799 (Vibrio phage Va_90-11-287_p41, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

26. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to KX581092 (Vibrio phage Len, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

27. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to KX581094 (Vibrio phage pVa-2, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

28. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to MK672803 (Vibrio phage Va_91-7-154_p41, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

29. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to KY658680 (Vibrio phage pVa-8, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

30. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to KY658675 (Vibrio phage H20, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

31. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to KX581095 (Vibrio phage pVa-1, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

32. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to KX581099 (Vibrio phage Strym, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

33. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to MK672801 (Vibrio phage Va_90-11-287_p41_T265, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

34. spacer 1.8|564353|36|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to KX581100 (Vibrio phage pVa-7, complete genome) position: , mismatch: 8, identity: 0.778

gtgataaatgaacaagtgaaagcatcggtgaaatta	CRISPR spacer
tcgatctagcaacatgtgaaagcattggtgaaatta	Protospacer
 .***  *  **** **********.**********

35. spacer 1.13|564672|35|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to MG788324 (Lactobacillus phage PM411, complete genome) position: , mismatch: 8, identity: 0.771

aaaggctttccagatttattcggatttcgcggaac	CRISPR spacer
caaggctttccggatttattcgggtttcgtcattc	Protospacer
 **********.***********.*****. .  *

36. spacer 1.12|564609|34|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to JN638751 (Bacillus phage G, complete genome) position: , mismatch: 9, identity: 0.735

aaagaaatatgcgagaatcttttgcaaattcctt	CRISPR spacer
ctaaaaatatccaagaatcttttgcaaatgcaaa	Protospacer
  *.****** *.**************** *

37. spacer 1.12|564609|34|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to MG945709 (UNVERIFIED: Microviridae sp. isolate 1866-1801, complete genome) position: , mismatch: 9, identity: 0.735

aaagaaatatgcgagaatcttttgcaaattcctt	CRISPR spacer
gtccatatatgcgagaaccttatgcaaattcata	Protospacer
.   * ***********.*** ********* *

38. spacer 1.13|564672|35|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to MK448754 (Streptococcus phage Javan411, complete genome) position: , mismatch: 9, identity: 0.743

aaaggctttccagatttattcggatttcgcggaac	CRISPR spacer
aaaggcttcccagatttatttggatataggcaaga	Protospacer
********.***********.**** * *  .*.

39. spacer 1.13|564672|35|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to MK448929 (Streptococcus phage Javan400, complete genome) position: , mismatch: 9, identity: 0.743

aaaggctttccagatttattcggatttcgcggaac	CRISPR spacer
aaaggcttcccagatttatttggatataggcaaga	Protospacer
********.***********.**** * *  .*.

40. spacer 2.19|578676|34|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014866 (Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK2, complete sequence) position: , mismatch: 9, identity: 0.735

acgaaaccagcaagtaaaacaaaagaaaaaacaa	CRISPR spacer
tcaaattacccaagtaaaacaaaagaacaaaaaa	Protospacer
 *.** .   ***************** *** **

41. spacer 2.19|578676|34|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to CP020756 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-17, complete sequence) position: , mismatch: 9, identity: 0.735

acgaaaccagcaagtaaaacaaaagaaaaaacaa	CRISPR spacer
tcaaattacccaagtaaaacaaaagaacaaaaaa	Protospacer
 *.** .   ***************** *** **

42. spacer 2.19|578676|34|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to NC_014937 (Bacillus thuringiensis CT43 plasmid pBMB0558, complete sequence) position: , mismatch: 9, identity: 0.735

acgaaaccagcaagtaaaacaaaagaaaaaacaa	CRISPR spacer
tcaaattacccaagtaaaacaaaagaacaaaaaa	Protospacer
 *.** .   ***************** *** **

43. spacer 2.19|578676|34|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to NC_017202 (Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT127, complete sequence) position: , mismatch: 9, identity: 0.735

acgaaaccagcaagtaaaacaaaagaaaaaacaa	CRISPR spacer
tcaaattacccaagtaaaacaaaagaacaaaaaa	Protospacer
 *.** .   ***************** *** **

44. spacer 2.19|578676|34|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to NC_020393 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-107, complete sequence) position: , mismatch: 9, identity: 0.735

acgaaaccagcaagtaaaacaaaagaaaaaacaa	CRISPR spacer
tcaaattacccaagtaaaacaaaagaacaaaaaa	Protospacer
 *.** .   ***************** *** **

45. spacer 2.19|578676|34|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021063 (Bacillus thuringiensis strain ATCC 10792 plasmid poh2, complete sequence) position: , mismatch: 9, identity: 0.735

acgaaaccagcaagtaaaacaaaagaaaaaacaa	CRISPR spacer
tcaaattacccaagtaaaacaaaagaacaaaaaa	Protospacer
 *.** .   ***************** *** **

46. spacer 1.26|565513|34|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043522 (Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_10, complete sequence) position: , mismatch: 10, identity: 0.706

gtctgtattgctagaaaaataactgctcttgata	CRISPR spacer
catgttattactagaaaaataaatgctctattta	Protospacer
  .  ****.************ ******   **

47. spacer 1.26|565513|34|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016751 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1E, complete sequence) position: , mismatch: 10, identity: 0.706

gtctgtattgctagaaaaataactgctcttgata	CRISPR spacer
catgttattactagaaaaataaatgctctattta	Protospacer
  .  ****.************ ******   **

48. spacer 1.26|565513|34|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to NC_017498 (Lactococcus lactis plasmid pSK11A, complete sequence) position: , mismatch: 10, identity: 0.706

gtctgtattgctagaaaaataactgctcttgata	CRISPR spacer
catgttattactagaaaaataaatgctctattta	Protospacer
  .  ****.************ ******   **

49. spacer 1.26|565513|34|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to NC_015860 (Lactococcus lactis subsp. lactis plasmid pIL1, complete sequence) position: , mismatch: 10, identity: 0.706

gtctgtattgctagaaaaataactgctcttgata	CRISPR spacer
catgttattactagaaaaataaatgctctattta	Protospacer
  .  ****.************ ******   **

50. spacer 1.26|565513|34|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016710 (Lactococcus lactis subsp. cremoris strain UC109 plasmid pUC109D, complete sequence) position: , mismatch: 10, identity: 0.706

gtctgtattgctagaaaaataactgctcttgata	CRISPR spacer
catgttattactagaaaaataaatgctctattta	Protospacer
  .  ****.************ ******   **

51. spacer 1.26|565513|34|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016710 (Lactococcus lactis subsp. cremoris strain UC109 plasmid pUC109D, complete sequence) position: , mismatch: 10, identity: 0.706

gtctgtattgctagaaaaataactgctcttgata	CRISPR spacer
catgttattactagaaaaataaatgctctattta	Protospacer
  .  ****.************ ******   **

52. spacer 1.26|565513|34|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to NC_008504 (Lactococcus lactis subsp. cremoris SK11 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.706

gtctgtattgctagaaaaataactgctcttgata	CRISPR spacer
catgttattactagaaaaataaatgctctattta	Protospacer
  .  ****.************ ******   **

53. spacer 1.26|565513|34|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to NC_019430 (Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS8, complete sequence) position: , mismatch: 10, identity: 0.706

gtctgtattgctagaaaaataactgctcttgata	CRISPR spacer
catgttattactagaaaaataaatgctctattta	Protospacer
  .  ****.************ ******   **

54. spacer 1.26|565513|34|NZ_CP009576|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016739 (Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3C, complete sequence) position: , mismatch: 10, identity: 0.706

gtctgtattgctagaaaaataactgctcttgata	CRISPR spacer
catgttattactagaaaaataaatgctctattta	Protospacer
  .  ****.************ ******   **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

125484 : 164893

Listeria_phage(92.31%)

terminase,portal,holin,capsid,integrase,protease

attL 126543:126586|attR 165534:165577

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003718156.1\|125484_126429_+	glyoxylate reductase	A0A2R8FDS8	Brazilian_cedratvirus	4.0e-33	37.1
126543:126586	attL	NA	NA	NA	NA
WP_038406391.1\|126690_127848_-\|integrase	site-specific integrase	A0A0B5CTW8	Listeria_phage	8.7e-123	55.7
WP_038406393.1\|127927_128494_-	hypothetical protein	NA	NA	NA	NA
WP_038406394.1\|128518_129046_-	ImmA/IrrE family metallo-endopeptidase	A0A1S7FYX8	Listeria_phage	2.6e-66	69.7
WP_038406396.1\|129061_129397_-	helix-turn-helix transcriptional regulator	A0A1S7FZ25	Listeria_phage	2.5e-30	58.7
WP_038406397.1\|129670_129847_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_158423288.1\|129864_130578_+	phage regulatory protein	A0A0P0IDD0	Lactobacillus_phage	3.5e-29	47.8
WP_038406398.1\|130567_130768_+	helix-turn-helix domain-containing protein	A0A1S7FYV9	Listeria_phage	1.9e-17	71.9
WP_038406399.1\|130760_131036_+	hypothetical protein	NA	NA	NA	NA
WP_038406400.1\|131032_131311_+	hypothetical protein	A0A1S7FYW4	Listeria_phage	1.9e-28	79.3
WP_077916388.1\|131332_131662_+	DUF3310 domain-containing protein	A6M9A0	Geobacillus_virus	7.9e-13	53.8
WP_038406402.1\|131654_131885_+	hypothetical protein	A0A1S7FYX1	Listeria_phage	1.4e-11	56.6
WP_038406403.1\|131872_132064_+	hypothetical protein	NA	NA	NA	NA
WP_038406404.1\|132060_132678_+	hypothetical protein	A0A1S7FZ47	Listeria_phage	1.4e-10	38.5
WP_038406405.1\|132679_133861_+	DUF2800 domain-containing protein	A0A1S7FYX0	Listeria_phage	8.2e-177	77.6
WP_038406406.1\|133878_134466_+	DUF2815 family protein	A0A1S7FZ05	Listeria_phage	2.6e-54	63.7
WP_077916432.1\|134759_136397_+	DNA polymerase	A0A1S7FZ18	Listeria_phage	1.1e-269	82.0
WP_038406408.1\|136597_137056_+	hypothetical protein	NA	NA	NA	NA
WP_038406409.1\|137052_137289_+	hypothetical protein	NA	NA	NA	NA
WP_038406411.1\|137285_137840_+	hypothetical protein	B6D7K8	Listeria_phage	7.8e-13	30.9
WP_038406412.1\|137826_138060_+	hypothetical protein	NA	NA	NA	NA
WP_038406414.1\|138335_138566_+	hypothetical protein	NA	NA	NA	NA
WP_038406416.1\|138562_138865_+	hypothetical protein	NA	NA	NA	NA
WP_038406418.1\|139124_141563_+	phage-like protein	A0A1S7FZ15	Listeria_phage	0.0e+00	83.0
WP_038406419.1\|141875_142157_+	type VI secretion protein	A0A1S7FZ22	Listeria_phage	1.7e-27	67.8
WP_038408097.1\|142165_143545_+	DEAD/DEAH box helicase	A0A1S7FYY5	Listeria_phage	1.7e-218	81.0
WP_077916433.1\|143528_143894_+	nucleoside triphosphate pyrophosphohydrolase family protein	A0A1S7FYY8	Listeria_phage	5.7e-28	57.8
WP_038406421.1\|143893_144076_+	hypothetical protein	NA	NA	NA	NA
WP_038406422.1\|144072_144615_+	hypothetical protein	A0A1S7FZ07	Listeria_phage	7.1e-67	75.9
WP_119878138.1\|144746_145055_+	HNH endonuclease	A0A1S7FZ53	Listeria_phage	4.6e-47	87.3
WP_038406423.1\|145178_145532_+\|terminase	terminase	A0A1S7FYW6	Listeria_phage	8.4e-45	79.5
WP_038406424.1\|145518_147165_+\|terminase	terminase large subunit	A0A1S7FZ68	Listeria_phage	3.7e-292	87.6
WP_038406425.1\|147176_148385_+\|portal	phage portal protein	A0A1S7FYX7	Listeria_phage	1.1e-192	84.7
WP_038406426.1\|148381_149218_+\|protease	Clp protease ClpP	A0A1S7FZ23	Listeria_phage	2.7e-102	70.9
WP_038406427.1\|149251_150397_+\|capsid	phage major capsid protein	A0A1S7FZ31	Listeria_phage	1.2e-188	87.4
WP_003768828.1\|150534_150831_+	hypothetical protein	A0A1S7FYY9	Listeria_phage	1.2e-31	69.5
WP_096867865.1\|150940_151147_+	hypothetical protein	A0A1S7FZ08	Listeria_phage	1.6e-24	79.1
WP_038406430.1\|151148_151550_+	hypothetical protein	A0A1S7FYZ7	Listeria_phage	2.8e-44	65.6
WP_038406431.1\|151536_151962_+	hypothetical protein	A0A1S7FZ20	Listeria_phage	7.2e-59	82.9
WP_038406432.1\|151978_152566_+	hypothetical protein	A0A1S7FZ79	Listeria_phage	6.0e-80	72.8
WP_077916389.1\|152576_152831_+	plasmid partitioning protein	NA	NA	NA	NA
WP_038406433.1\|152886_153258_+	hypothetical protein	A0A1S7FZ84	Listeria_phage	5.4e-42	68.3
WP_038406434.1\|153437_157832_+	hypothetical protein	A0A1S7FYZ4	Listeria_phage	0.0e+00	68.8
WP_038406436.1\|157828_158740_+	hypothetical protein	A0A1S7FZ36	Listeria_phage	4.1e-136	76.3
WP_038406437.1\|158739_159768_+	aspartate-semialdehyde dehydrogenase	A0A1S7FZ49	Listeria_phage	1.8e-151	76.3
WP_038406438.1\|159769_160540_+	hypothetical protein	A0A1S7FZ03	Listeria_phage	1.7e-106	68.8
WP_144242632.1\|160536_160875_+	hypothetical protein	NA	NA	NA	NA
WP_077916390.1\|160874_161012_+	XkdX family protein	A0A059T6D9	Listeria_phage	2.8e-12	75.6
WP_038406440.1\|161049_161271_+	hypothetical protein	NA	NA	NA	NA
WP_038406441.1\|161272_161683_+	hypothetical protein	NA	NA	NA	NA
WP_038406443.1\|161689_161947_+\|holin	phage holin	A8ATB7	Listeria_phage	4.6e-24	68.2
WP_038406444.1\|161949_162810_+	N-acetylmuramoyl-L-alanine amidase family protein	Q0PRU8	Listeria_phage	2.1e-150	87.5
WP_052010516.1\|163133_163517_+	hypothetical protein	NA	NA	NA	NA
WP_052010519.1\|163509_164229_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA
WP_038406445.1\|164212_164605_+	hypothetical protein	NA	NA	NA	NA
WP_038406447.1\|164686_164893_-	hypothetical protein	A0A059T7Z0	Listeria_phage	3.9e-18	86.2
165534:165577	attR	NA	NA	NA	NA

DBSCAN-SWA_2

198266 : 208997

Listeria_phage(36.36%)

holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003718205.1\|198266_198719_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.3e-33	49.3
WP_003718206.1\|198724_199060_-	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	1.8e-20	52.5
WP_038408106.1\|199284_199713_+	hypothetical protein	A8ATZ8	Listeria_phage	1.5e-11	44.9
WP_038406483.1\|199725_200145_+	hypothetical protein	A8ASQ1	Listeria_phage	6.5e-20	38.6
WP_077916392.1\|200423_200795_+	DUF5072 family protein	NA	NA	NA	NA
WP_038406485.1\|200807_201320_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	3.4e-47	63.4
WP_038406486.1\|201367_201670_+	hypothetical protein	NA	NA	NA	NA
WP_052010522.1\|201675_202113_+	hypothetical protein	A0A097PAX1	Streptococcus_pyogenes_phage	9.5e-22	42.0
WP_038406488.1\|202102_203968_+	membrane protein	A0A097PAU2	Streptococcus_pyogenes_phage	7.2e-18	47.3
WP_038406489.1\|203967_204786_+\|tail	phage tail family protein	A0A2H4J4B7	uncultured_Caudovirales_phage	7.0e-42	33.2
WP_038406490.1\|204795_205932_+	minor structural protein	A8ATA9	Listeria_phage	2.2e-46	27.1
WP_038406491.1\|205921_206221_+	hypothetical protein	NA	NA	NA	NA
WP_038406492.1\|206235_206811_+	hypothetical protein	NA	NA	NA	NA
WP_038406493.1\|206825_207305_+	hypothetical protein	NA	NA	NA	NA
WP_038406494.1\|207301_207838_+	hypothetical protein	NA	NA	NA	NA
WP_003745164.1\|207856_208279_+\|holin	holin family protein	Q2I8E7	Bacillus_phage	7.3e-27	45.6
WP_038406495.1\|208259_208997_+	N-acetylmuramoyl-L-alanine amidase	A0A0N9SGH1	Paenibacillus_phage	1.5e-35	46.3

DBSCAN-SWA_3

756497 : 789787

Listeria_phage(54.29%)

terminase,portal,holin,capsid,plate,integrase,tail,head,protease

attL 750425:750439|attR 762281:762295

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
750425:750439	attL	NA	NA	NA	NA
WP_038406787.1\|756497_757643_-\|integrase	site-specific integrase	A0A1S5S7K9	Streptococcus_phage	1.5e-63	39.9
WP_038406788.1\|757771_758098_-	hypothetical protein	NA	NA	NA	NA
WP_052010549.1\|758113_758581_-	hypothetical protein	D7RWF1	Brochothrix_phage	1.3e-05	48.9
WP_038406789.1\|758632_759085_-	ImmA/IrrE family metallo-endopeptidase	R4IBK9	Listeria_phage	2.2e-77	90.7
WP_033922848.1\|759101_759425_-	helix-turn-helix transcriptional regulator	R4IDX0	Listeria_phage	5.3e-38	73.8
WP_033922846.1\|759692_759884_+	helix-turn-helix transcriptional regulator	A0A059T5F8	Listeria_phage	1.2e-21	85.5
WP_009917612.1\|759902_760091_+	hypothetical protein	NA	NA	NA	NA
WP_038406791.1\|760115_760301_+	hypothetical protein	A8ATD3	Listeria_phage	2.1e-23	83.6
WP_038406792.1\|761056_761488_+	hypothetical protein	R4IDY1	Listeria_phage	1.8e-49	69.8
WP_038406793.1\|761484_761775_+	hypothetical protein	NA	NA	NA	NA
WP_023553777.1\|761947_762160_+	hypothetical protein	NA	NA	NA	NA
WP_038406794.1\|762181_762472_+	hypothetical protein	NA	NA	NA	NA
762281:762295	attR	NA	NA	NA	NA
WP_052010626.1\|762601_762883_+	hypothetical protein	R4IBK0	Listeria_phage	7.4e-36	100.0
WP_038406795.1\|762883_763306_+	hypothetical protein	Q8W5W4	Listeria_phage	4.3e-72	98.6
WP_038406796.1\|763472_763673_+	hypothetical protein	A8ATE8	Listeria_phage	5.9e-11	54.7
WP_038406797.1\|763669_764281_+	MBL fold metallo-hydrolase	B6D7K1	Listeria_phage	3.7e-48	49.5
WP_038406798.1\|764297_764531_+	hypothetical protein	NA	NA	NA	NA
WP_038406799.1\|764527_765298_+	DUF1351 domain-containing protein	B6D7K2	Listeria_phage	6.0e-19	28.2
WP_038406800.1\|765299_765935_+	hypothetical protein	NA	NA	NA	NA
WP_038406801.1\|766000_767692_+	DNA polymerase	A8ATS1	Listeria_phage	7.5e-123	42.5
WP_038406802.1\|767694_769500_+	DNA primase	A8ATS2	Listeria_phage	1.8e-127	41.0
WP_077916437.1\|770377_771064_+	DUF3310 domain-containing protein	A8ATF5	Listeria_phage	4.5e-42	45.8
WP_038406803.1\|771068_771494_+	DUF722 domain-containing protein	A8ATF6	Listeria_phage	8.8e-73	98.6
WP_038406804.1\|771587_772331_+	DUF559 domain-containing protein	NA	NA	NA	NA
WP_038406805.1\|772851_773226_+	HNH endonuclease	A0A2I7SC48	Paenibacillus_phage	3.2e-18	54.1
WP_038406806.1\|773266_773641_+\|terminase	P27 family phage terminase small subunit	A0A0U4JV93	Exiguobacterium_phage	1.1e-23	56.0
WP_038406807.1\|773637_775389_+\|terminase	terminase large subunit	A6XMJ4	Bacillus_virus	4.2e-262	75.2
WP_038406808.1\|775402_776584_+\|portal	phage portal protein	Q0H263	Geobacillus_phage	4.4e-130	59.1
WP_038406809.1\|776580_777165_+\|head,protease	HK97 family phage prohead protease	Q0H262	Geobacillus_phage	1.9e-46	53.2
WP_038406810.1\|777155_778343_+\|capsid	phage major capsid protein	A0A2H4J3W9	uncultured_Caudovirales_phage	8.4e-89	58.8
WP_038406811.1\|778347_778527_+	hypothetical protein	A0A0U4IS36	Exiguobacterium_phage	1.3e-09	48.2
WP_038406812.1\|778526_778817_+	hypothetical protein	A6XMJ8	Bacillus_virus	6.3e-22	62.4
WP_038406813.1\|778800_779106_+\|head	phage head closure protein	Q0H236	Geobacillus_phage	8.7e-22	48.0
WP_038406814.1\|779112_779466_+	hypothetical protein	A0A0U4II15	Exiguobacterium_phage	7.7e-22	43.6
WP_038406815.1\|779462_779786_+	hypothetical protein	A0A0U4JNN6	Exiguobacterium_phage	4.9e-15	45.7
WP_010991264.1\|779786_780365_+\|tail	phage tail protein	A0A0U4JWV5	Exiguobacterium_phage	6.0e-64	63.8
WP_038406816.1\|780407_780764_+	hypothetical protein	D2XR24	Bacillus_phage	1.4e-31	56.8
WP_038406817.1\|780987_784269_+\|tail	phage tail protein	D2XR25	Bacillus_phage	9.5e-74	44.0
WP_038406818.1\|784265_785006_+	hypothetical protein	Q8W5Z6	Listeria_phage	6.4e-10	25.2
WP_038406819.1\|784987_787129_+	hypothetical protein	R4IDV9	Listeria_phage	1.7e-212	54.9
WP_038406820.1\|787125_788229_+\|plate	BppU family phage baseplate upper protein	Q8W5Z4	Listeria_phage	1.8e-61	81.0
WP_038406821.1\|788263_788647_+	hypothetical protein	NA	NA	NA	NA
WP_038406822.1\|788666_788924_+\|holin	phage holin	A8ATB7	Listeria_phage	2.7e-24	68.2
WP_038406823.1\|788926_789787_+	N-acetylmuramoyl-L-alanine amidase family protein	Q0PRU8	Listeria_phage	4.8e-150	87.1

DBSCAN-SWA_4

2012985 : 2021296

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003720078.1\|2012985_2013579_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.1e-28	39.5
WP_003720079.1\|2013575_2014625_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	2.0e-65	43.3
WP_038407520.1\|2014640_2016068_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.4e-53	34.2
WP_038407521.1\|2016052_2018272_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.3e-156	40.9
WP_003720082.1\|2018264_2018948_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003720083.1\|2018951_2019197_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003720084.1\|2019208_2019922_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3HWF9	Synechococcus_phage	2.0e-40	37.8
WP_003720085.1\|2020003_2021296_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	4.2e-17	33.0

DBSCAN-SWA_5

2695608 : 2703463

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038407850.1\|2695608_2696580_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	8.8e-52	39.4
WP_038407851.1\|2696587_2697556_-	YvcK family protein	A1IMD5	Streptococcus_phage	9.7e-67	42.7
WP_003720786.1\|2697557_2698433_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	7.0e-08	28.8
WP_038407852.1\|2698541_2700272_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	1.9e-169	53.2
WP_052010617.1\|2700317_2701388_-	galactose mutarotase	NA	NA	NA	NA
WP_038407853.1\|2701406_2702390_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	1.3e-50	37.5
WP_038407854.1\|2702503_2703463_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	8.9e-89	54.1

DBSCAN-SWA_6

2893605 : 2918435

Streptococcus_phage(28.57%)

integrase,transposase

attL 2896519:2896534|attR 2918102:2918117

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038408267.1\|2893605_2895060_-\|transposase	IS21 family transposase	NA	NA	NA	NA
2896519:2896534	attL	NA	NA	NA	NA
WP_038407973.1\|2897724_2898297_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_038407974.1\|2898384_2899320_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_038407975.1\|2899742_2901542_+	collagen binding domain-containing protein	NA	NA	NA	NA
WP_038407976.1\|2901768_2904684_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	5.5e-174	36.6
WP_003728468.1\|2904687_2905242_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	7.0e-38	53.4
WP_003728467.1\|2905521_2905881_+	Cd(II)-sensing metalloregulatory transcriptional repressor CadC	E4ZFI8	Streptococcus_phage	3.1e-26	50.0
WP_003728466.1\|2905880_2908016_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.6e-247	64.5
WP_077916280.1\|2908394_2908583_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_158423286.1\|2908610_2908811_+	hypothetical protein	NA	NA	NA	NA
WP_038407977.1\|2908951_2909554_+	recombinase family protein	A0A1V0E035	Clostridioides_phage	1.1e-17	35.7
WP_038407979.1\|2909560_2909773_+	hypothetical protein	NA	NA	NA	NA
WP_038407980.1\|2910229_2910514_+	DUF3130 domain-containing protein	NA	NA	NA	NA
WP_038407982.1\|2910514_2910883_+	hypothetical protein	NA	NA	NA	NA
WP_038407983.1\|2910879_2912304_+	hypothetical protein	NA	NA	NA	NA
WP_038407985.1\|2912897_2913158_+	hypothetical protein	NA	NA	NA	NA
WP_077916282.1\|2913498_2914812_+	Y-family DNA polymerase	O64031	Bacillus_phage	1.7e-90	44.0
WP_009932612.1\|2914872_2915973_+\|integrase	tyrosine-type recombinase/integrase	A0A1W6JPB2	Staphylococcus_phage	9.5e-10	27.7
WP_038407987.1\|2915972_2918057_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_014601542.1\|2918066_2918435_+\|transposase	transposase	NA	NA	NA	NA
2918102:2918117	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3013093 : 3023306

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038408056.1\|3013093_3015247_-	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	2.2e-42	33.3
WP_038408057.1\|3015293_3017069_-	DNA helicase RecQ	A0A2K9L3P7	Tupanvirus	5.3e-79	36.9
WP_038408058.1\|3017390_3018857_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.4e-96	40.0
WP_003721089.1\|3019140_3019671_-	ADP-ribose-binding protein	A0A0K1L687	Scale_drop_disease_virus	2.2e-28	47.9
WP_038408059.1\|3019728_3021339_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.5e-51	31.2
WP_077916431.1\|3021517_3021835_+	hypothetical protein	NA	NA	NA	NA
WP_038408060.1\|3021851_3023306_+	glycoside hydrolase family 1 protein	A0A0B5JD41	Pandoravirus	4.7e-49	29.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009576

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection