CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP004385	Burkholderia thailandensis MSMB59 chromosome 1, complete sequence	2 crisprs	WYL,cas3,RT,PrimPol,DEDDh,csa3,DinG,PD-DExK	0	0	11	0
NZ_CP004386	Burkholderia thailandensis MSMB59 chromosome 2, complete sequence	2 crisprs	DinG,csa3,cas3	0	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP004385_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP004385_1

414283-414406

Orphan

Consensus_repeat	Method
TTAGCGCTTACTCCGATCCCATGCCGTGGTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP004385_1

>merge|NZ_CP004385|1|414283-414406|CRISPRCasFinder
TTAGCGCTTACTCCGATCCCATGCCGTGGTTGGCCGAAGTTAGCGCTTCAGCGCTTACTCCGGCCCCGCGGCGGTCGATCGGAGTTAGCGCCTTAGCGCTTACTCCGATCCCATGCCATGGTTG

>NZ_CP004385|1|1|414283-414406|CRISPRCasFinder
TTAGCGCTTACTCCGATCCCATGCCGTGGTTG	GCCGAAGTTAGCGCTTCAGCGCTTACTCCGGCCCCGCGGCGGTCGATCGGAGTTAGCGCC
TTAGCGCTTACTCCGATCCCATGCCATGGTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP004385.1\|WP_009906702.1\|416966_418508_-\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448
NZ_CP004385.1\|WP_009910291.1\|410392_411187_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270231
NZ_CP004385.1\|WP_009910293.1\|411877_413608_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236236
NZ_CP004385.1\|WP_009910284.1\|399082_400624_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341286
NZ_CP004385.1\|WP_009906688.1\|400823_401963_-\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380565
NZ_CP004385.1\|WP_009910297.1\|421805_422939_-\|citrate-transporter	unknown	unknown	gnl\|CDD\|238537
NZ_CP004385.1\|WP_009906695.1\|409149_410244_-\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NZ_CP004385.1\|WP_025992326.1\|420040_420892_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235617
NZ_CP004385.1\|WP_009906701.1\|416019_416895_-\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|235535
NZ_CP004385.1\|WP_009906703.1\|418554_419094_-\|F0F1-ATP-synthase-subunit-delta	unknown	unknown	gnl\|CDD\|235593
NZ_CP004385.1\|WP_009910285.1\|402047_405977_-\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP004385.1\|WP_009906700.1\|413827_414253_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|234796
NZ_CP004385.1\|WP_004195828.1\|419694_419964_-\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|180739
NZ_CP004385.1\|WP_025404150.1\|406441_408709_-\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NZ_CP004385.1\|WP_004185283.1\|419096_419567_-\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|180240
NZ_CP004385.1\|WP_011402665.1\|406260_406431_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341251
NZ_CP004385.1\|WP_009910299.1\|422945_423833_-\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP004385.1\|WP_009906697.1\|411641_411836_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004385.1\|WP_004185243.1\|414545_415940_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NZ_CP004385.1\|WP_025992327.1\|421004_421535_-\|ATP-synthase-subunit-I	unknown	unknown	gnl\|CDD\|377159

Protein	Function_ID	Function_description	E-value
NZ_CP004385.1\|WP_009906702.1\|416966_418508_-\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NZ_CP004385.1\|WP_009910291.1\|410392_411187_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270231	cd01069, PBP2_PheC, Cyclohexadienyl dehydratase, a member of the type 2 periplasmic binding fold protein superfamily. This subfamily includes cyclohexadienyl dehydratase PheC. These proteins catalyze the decarboxylation of prephenate to phenylpyruvate in the alternative phenylalanine biosynthesis pathway in some proteobacteria and archaea. The PheC proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Since they the PheC proteins are so similar to periplasmic binding proteins, (PBP), it is evolutionarily plausible that several pre-existing PBP proteins might have been recruited to perform the enzymatic function.	1.49544e-125
NZ_CP004385.1\|WP_009910293.1\|411877_413608_-\|AMP-binding-protein	gnl\|CDD\|236236	PRK08315, PRK08315, AMP-binding domain protein; Validated.	0
NZ_CP004385.1\|WP_009910284.1\|399082_400624_+\|AMP-binding-protein	gnl\|CDD\|341286	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13. This family contains fatty acyl-CoA synthetases, including Mycobacterium tuberculosis acid-induced operon MymA encoding the fatty acyl-CoA synthetase FadD13 which is essential for virulence and intracellular growth of the pathogen. The fatty acyl-CoA synthetase activates lipids before entering into the metabolic pathways and is also involved in transmembrane lipid transport. However, unlike soluble fatty acyl-CoA synthetases, but like the mammalian integral-membrane very-long-chain acyl-CoA synthetases, FadD13 accepts lipid substrates up to the maximum length of C26, and this is facilitated by an extensive hydrophobic tunnel from the active site to a positively charged patch. Also included is feruloyl-CoA synthetase (Fcs) in Rhodococcus strains where it is involved in biotechnological vanillin production from eugenol and ferulic acid via a non-beta-oxidative pathway.	5.94488e-162
NZ_CP004385.1\|WP_009906688.1\|400823_401963_-\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380565	cd06342, PBP1_ABC_LIVBP-like, type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.	1.78326e-142
NZ_CP004385.1\|WP_009910297.1\|421805_422939_-\|citrate-transporter	gnl\|CDD\|238537	cd01117, YbiR_permease, Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.	4.83084e-60
NZ_CP004385.1\|WP_009906695.1\|409149_410244_-\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NZ_CP004385.1\|WP_025992326.1\|420040_420892_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|235617	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.	1.85871e-71
NZ_CP004385.1\|WP_009906701.1\|416019_416895_-\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|235535	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.	6.55675e-157
NZ_CP004385.1\|WP_009906703.1\|418554_419094_-\|F0F1-ATP-synthase-subunit-delta	gnl\|CDD\|235593	PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated.	2.09611e-64
NZ_CP004385.1\|WP_009910285.1\|402047_405977_-\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP004385.1\|WP_025404150.1\|406441_408709_-\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NZ_CP004385.1\|WP_004195828.1\|419694_419964_-\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|180739	PRK06876, PRK06876, F0F1 ATP synthase subunit C; Validated.	4.52385e-24
NZ_CP004385.1\|WP_009906700.1\|413827_414253_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|234796	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated.	3.94743e-62
NZ_CP004385.1\|WP_011402665.1\|406260_406431_+\|hypothetical-protein	gnl\|CDD\|341251	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM). MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12.	0.00358196
NZ_CP004385.1\|WP_009910299.1\|422945_423833_-\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	5.52547e-78
NZ_CP004385.1\|WP_004185283.1\|419096_419567_-\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|180240	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated.	5.5546e-56
NZ_CP004385.1\|WP_004185243.1\|414545_415940_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NZ_CP004385.1\|WP_025992327.1\|421004_421535_-\|ATP-synthase-subunit-I	gnl\|CDD\|377159	pfam03899, ATP-synt_I, ATP synthase I chain. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI. AtpI is a Ca2+/Mg2+ transporter.	4.5358e-12

>NZ_CP004385.1|WP_009906700.1|413827_414253_-|F0F1-ATP-synthase-subunit-epsilon
MATIKVDVVSAEEQIFSGLAKFVALPGEAGELGILPGHTPLITRIRPGAVRIEAESGDEEFVFVAGGILEVQPGAVTVLADTAIRGKDLDAAKAEEARKRAEETLQNAKSDIDLAKAQSELATAMAQLEAIQRLAKIRGRH
>NZ_CP004385.1|WP_009910293.1|411877_413608_-|AMP-binding-protein
MAADSGVGALIAPQRGLSYVRGPADVPLSEATIGRFLLDTVARFPDRAAVVFREQGVRWTWREFADEVDVLATALIELGVARGDRVGIWSPNRAEWLLTQFATARIGAVLVNVNPAYRLAELEYALNKVGCKLLIAAERFKTSAYIEMISEIAPELATTPADGMLHAARVPSLRTVVTMGAAAPAGMLSFADVLARGRAALDPARLDAIGAALDCRDPINIQFTSGTTGSPKGATLTHHNVVNNACSIASVMRLTEVDAMCIPVPLYHCFGMVLSVLACVSVGAKMVFPGEAFEPGATLAAVSDERCTALQGVPTMFIAELDHPDFDRFDLSTLRTGIMAGSPCPIETMKRVVAKMHMSEVTIAYGMTETSPVSFQSSTTDSLEKRTTTVGRIQPHLEAKIVDATGAIVPVGETGELCTRGYSVMLGYWDDEARTREAVVDGWMRTGDLATLDEEGFCNIVGRLKDMLIRGGENVYPREIEEFLFRHPKIQSVQVFGVPDPKYGEEVCAWIVLRAGETMTDDELREFCRGQIAHYKVPRYVRFVDELPMTVTGKVQKFVMRERMIDELGLSVQKTA
>NZ_CP004385.1|WP_009906697.1|411641_411836_-|hypothetical-protein
MSPLKTTRYGVSARRPKMERIGVGRRRLQQGCPCEGIRYETDGPVIRACVRSHAAHETASVLKP
>NZ_CP004385.1|WP_009910291.1|410392_411187_+|transporter-substrate-binding-domain-containing-protein
MKMKITLLALACCAGFAHAQAAREHAAPAMPASRLDDVLARGTLRVCTTGDYKPYTYRREDGAFEGIDIDMAASLAKSLGVKTAFVKTTWPTLTDDFVAKCDIAVGGISTTLERQKHVFFTQPYVTDGKTPIVRCADVERYQTIAQIDQPQTRVIVNPGGTNERFAKQHFTHARITVFPDNVTIFKQILAGNADVMVTDASETLLQQKLNPGLCSVHPDKPFQFGEKAYMVPRGDVVFQQYVDQWLHLARETGELQAISDKWLK
>NZ_CP004385.1|WP_009906695.1|409149_410244_-|uroporphyrinogen-decarboxylase
MAQTLINDTFLRALLREPTDYTPIWLMRQAGRYLPEYNATRARAGSFLGLAKHPDYATEVTLQPLERFPLDAAILFSDILTIPDAMGLGLDFAAGEGPKFAHPVRTEADVAKLAVPDIGATLGYVTDAVREIRRALTDGEGRQRVPLIGFSGSPWTLACYMVEGGGSDDFRTVKSMAYARPDLMHRILDVNAQAVAAYLNAQIEAGAQAVMIFDTWGGALADGAYQRFSLDYIRRVVAQLKREHDGARVPAIAFTKGGGLWLEDLAATGVDAVGLDWTVNLGRARERVAGRVALQGNLDPTILFAPPEAIRAEARAVLDSYGNHPGHVFNLGHGISQFTPPEHVAELVDEVHRHSRAIRSGTGS
>NZ_CP004385.1|WP_025404150.1|406441_408709_-|primosomal-protein-N'
MADAFVRVALDHPLPTLFDYRYRGDAPAAPGMLVQVPFGRRSAVGLVCEVTAHTDVPANKLKAVDAVCAELPPLSRRWLDLVAFAADYYQRGLGEVALPALPQALRDVTRWGRLLAPELRYRLLDAGRAALPAALPARGAALRRLAQALADAPALSLAEVRALHPKAVAVLDEWQAQGWAACDEIAITHAHAQFVGNPAPIAGWRAVASRPQLTDQQADALDAIASADGFVPFLLHGVTGSGKTEVYLRALAALLERRSDAQALVLVPEINLTPQFEAAFRARFAATLPADAIVTLHSGLAEGERARHWLAAHTGRARIVLGTRLAVLASLPALAMIVVDEEHEPAYKQQEGLRYSARDLAVWRAKQCAIPVVLGSATPSLETWWQAEQGRYRRLTLTKRAVADAALPTVRLVDLEEERRRGRGSIGGLSGPLVAALKARLERGEQSLVFLNRRGYAPALACDACGWVAGCPRCSAYVVMHKPEHAVRCHHCGWEARIPRSCPECGNVDIAPLGRGTQRVEETLALAVPGARVLRIDADSTRRKGSAQALFSDVHAGEVDILVGTQMIAKGHDFQRVSLVGVLNADTALFSHDFRASERLFAQLMQVSGRAGRAGLPGEVLIQTRYPRHALYHALARQDYVGFAGATLGERRDAHLPPFVYQALLRAEGRTLEAALVFLQQAADAFSALPGAERVTVYDAVPMTIVKVANVHRAQLLIESASRAALQHTLRAWQPLLRELKGVLRWSVEVDPLDI
>NZ_CP004385.1|WP_011402665.1|406260_406431_+|hypothetical-protein
MDGWVVIGIVLAAWIAGAIVFVHRASAVFFQALGYAHGAKKGKRRARIPGLREAHE
>NZ_CP004385.1|WP_009910285.1|402047_405977_-|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MASTTLGVKVDDLLRARLKDAASRLERTPHWLIKQAIFAYLERIEHGQLPPELSGHTGMADLSDGHADGDEDGAPHPFLEFAQNVQPQSVLRAAITAAYRRPEPECVPFLIGEARLPASLAPDVQSMAAGLVEALREKSSGGGVEGLIHEFSLSSQEGVALMCLAEALLRIPDRATRDALIRDKISKGDWRSHVGHAPSLFVNAATWGLMITGKLVTTNSEAGLSSALTRLIGKGGEPLIRKGVDMAMRLMGEQFVTGETISEALANSRKYEARGFRYSYDMLGEAATTEEDALRYYASYEQAIHAIGKAAGGRGIYEGPGISIKLSALHARYSRSQQERTMNELLPRVRSLALLARRYDIGLNIDAEEADRLELSLDLLEALCFDSELAGWNGIGFVVQAYQKRCPFVIDYLVDLARRSRHRLMIRLVKGAYWDSEVKRAQVDGLEGYPVYTRKIYTDVSYLACAKKLLAAPDAVYPQFATHNAYTLAAIYHLAGQNYYPGQYEFQCLHGMGEPLYEEVTGRDKLNRPCRVYAPVGTHETLLAYLVRRLLENGANTSFVNRIADKTVSVKELVADPVEEAAKVVPLGAPHAKIALPRELYGASRVNSMGLDLSNEHRLASLSSALLASAHHPWRAAPMLADDALAHAEPRDVRNPADLRDVVGTVSEATPEEVGAALAHAVAAAPIWQATPVDARADCLARAADLLEAQMHTLMGLIVREAGKSLPNAIAEIREAVDFLRYYSAQIRDEFSNDTHRPLGPVVCISPWNFPLAIFMGQVAAALAAGNTVLAKPAEQTPLIAAQAVRLLRDAGVPAGAVQLLPGNGETVGAALVADPRTRAVMFTGSTEVARLINKTLSSRLDPDGKPIPLIAETGGQNAMIVDSSALAEQVVADVLQSSFDSAGQRCSALRVLCLQDDVADRTLTMLKGAMRELALGNPDRLSVDVGPVIDADAKRTIDAHIAAMKDKGHAVTQLEMPEACAQGTFVPPTIIEIGNVDELKREVFGPVLHVVRYRRSGLDKLLEQIRATGYGLTLGIHTRIDETIAHVISRAHVGNIYVNRNVIGAVVGVQPFGGEGLSGTGPKAGGALYLQRLLATRPAGLPRSLEASLVADAPQEGETRDNPSAALTALRDWLIEQREPALAARCDGYLSHVLAGATAVLSGPTGERNTYTLGARGTVLCIAATASGARAQFAAVLATGNRALFASAAGEALAAALPAPLKAHAAVRKQADAAFDAVLFEGDSDELLALVKEVAQRPGPIVSVQGVAAGAFENGGDEDYALERLLTERSVSVNTAAAGGNANLMTIG
>NZ_CP004385.1|WP_009906688.1|400823_401963_-|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein
MQHTMKKLAGATFVAVMSLAGTAHADDVKIGFAAPMTGAQAHYGKDMQNGIVLAIEDINATKPVIGGKPVKFVLDTQDDQADPRTGTTVAQKLVDDGIKGMLGHFNSGTTIPASRIYANAGIPQIAMATAPEYTQQGYKTTFRMMTSDTQQGSVAGAFAVKDLGMKKIAIVDDRTAYGQGLADQFEKAAKAAGATIVDREFTNDKAVDFKAILTKLKAAKPDLVYYGGADSQAAPMAKQMKSLGVTAPLMGGEMMHTPTFLKIAGSAAEGSIASLAGLPLAEMPGGKTYEDKYKKRFGEDVQTYSPYAYDGAMAMFNAMKKANSTDPAKYLPLLAKTDMAGVTSTHIAYDAKGDLKNGGITMYKVEKGEWKPLKSIGGK
>NZ_CP004385.1|WP_009910284.1|399082_400624_+|AMP-binding-protein
MNLIAALERAARATPDKPFLRDDGATITYRQMQQRSRRAAEVLASLGIAPGERVAAMCLNTPAFFDLLLGAWRIGAVVVPVNHKLQAPEVDHILRHSASRAVLFDAALAPVLAGVGHGALRLVTEGDAAGAAPFDRLVADAPGIASGTPDDAALAEILYTSGTTGRPKGCMHSHRTVALAAATSALALSMTERERTLMAMPIWHASPLNNWFGGTLYVGGTVVLMREYHPLRFLQTVEAEQATLYFGAPVSYTLPLDTIADFASFDLTSVRAWLYGGGPIGAALARRLMRAYRSEAFYQVYGMTETGPAGTVLHPFEQTMKAGSIGRQGTPGVDVRVVTAVGDVARPGEIGEIRLRADSMMLGYLDDPDATRAAFDDDGWHRSGDVARVDDDGYLFVVDRIKDMIVTGGENVYSKEVEDVLTEHPAVAEAAVIGRAHPQWGETVIAHVVLRGAGSADRAPDGERAVDADALRAFCATRLAAYKIPREYVFAERLPRTPTGKLQKYLLRARGGA
>NZ_CP004385.1|WP_004185243.1|414545_415940_-|F0F1-ATP-synthase-subunit-beta
MSTAALVEGKIVQCIGAVIDVEFPRESMPKIYDALILEGSELTLEVQQQLGDGVVRTICLGASDGLRRGVVVKNTGNPISVPVGKPTLGRIMDVLGRPIDEAGPIESENKRSIHQKAPAFDELSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELINNIAKEHGGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGLDVLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKKGSITSVQAVYVPADDLTDPSPATTFGHLDATVVLSRDIASLGIYPAVDPLDSTSRQIDPNVIGEEHYSITRRVQQTLQRYKELRDIIAILGMDELSPEDKLSVARARKIQRFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMIVDGECDHLPEQAFYMVGTIDEAFEKAKKIQ
>NZ_CP004385.1|WP_009906701.1|416019_416895_-|F0F1-ATP-synthase-subunit-gamma
MAGMKEIRGKIKSVQNTRKITKAMEMVAASKMRRAQERMRAARPYAEKVRAIAAHMSRANPEYRHPFMVANEGVKTAGMILVTTDKGLCGGLNTNVLRASLQKFKELEEKGQKVEATAIGGKGLGFLNRFGAKVISQVVHLGDTPHLDKLIGAVKTQLDLYSEGRLSAVYLAYTRFVNTMKQETVIEQLLPLSSEHFDANDGTPATSWDYIYEPDAQAVVDELLVRYVEALVYQAVAENMASEQSARMVAMKAASDNAKTVISELQLSYNKSRQAAITKELSEIVGGAAAV
>NZ_CP004385.1|WP_009906702.1|416966_418508_-|F0F1-ATP-synthase-subunit-alpha
MQLNPSEISELIKSRIQGLEASADVRNQGTVISVTDGIVRIHGLSDVMQGEMLEFPGNTFGLALNLERDSVGAVILGEYEHISEGDIVKTTGRILEVPVGPELVGRVVDALGNPIDGKGPVNAKLTDAIEKIAPGVIWRKSVSQPVQTGLKSIDSMVPIGRGQRELIIGDRQCGKTAVAIDTIINQKGKDLICIYVAIGQKASSIMNVVRKLEETGALEYTIVVAASASESAAMQYLAPYAGCTMGEYFRDRGQDALIIYDDLTKQAWAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAARVSEEYVEKFTNGEVKGKSGSLTALPVIETQAGDVTAFVPTNVISITDGQIFLETDLFNAGIRPAINAGVSVSRVGGAAQTKVVKKLSGGIRTDLAQYRELAAFAQFASDLDEATRKQLERGRRVTELLKQPQYQPLQVWELAVSLFSANNGYLDDLDVKDVLPFEKGLREYLKTSHADLIKRIEDTKDLSKDDESALHAAIKDFKKSGAY
>NZ_CP004385.1|WP_009906703.1|418554_419094_-|F0F1-ATP-synthase-subunit-delta
MAELATIARPYAEALFRVAEGGDISAWSTLVQELAQVAQLPEVLSVASSPKVSRAQVAELLLATLKSPLASGAQAKNFVQMLVDNHRIALLPEIAVQFEALKNAREGAADVQIVSAFPLEGAQLAELVTSLERKFKRKLKPAVEVDSSLIGGVRVTVGDEVLDTSVRARLAGMQAALTA
>NZ_CP004385.1|WP_004185283.1|419096_419567_-|F0F1-ATP-synthase-subunit-B
MNLNATLFAQMVVFLVLAWFTMKFVWPPLINALDERSKKIADGLAAAEKGKAELEAAHKRVDQELAQARNDGQQRIADAEKRALAVADEIKTNAQAEAARIIAQAKAEAEQQIVKARETLRGEVAALAVKGAEQILKREVDQTAHAELLNQLKAEL
>NZ_CP004385.1|WP_004195828.1|419694_419964_-|F0F1-ATP-synthase-subunit-C
MQAFIANIQGLTAIGIGIIIGLGAIGACIGIALMGGKYIEACARQPELINPLQTKMFLLAGLIDAAFLIGVGVAMLFAFANPLLSKLAG
>NZ_CP004385.1|WP_025992326.1|420040_420892_-|F0F1-ATP-synthase-subunit-A
MAASEGMRAPDPSEYIAHHLQNFSTSHQTSIFDIHVWNLDTLFWSIVCGLITILLLRLAARKATPGVPGRFQCAIEMLVEMVEDQSKAIVHGNRAFIAPLALTVFVWVALMNSLDFLPVDLPGRVIGWLGLSGVISHHRIVPTADLNGTLGIALGVFVLMLYYSVKIKGVGGFAHELVSAPFGAHPLLWIPNLALNIVEYVAKTVSLGMRLFGNMYAGELVFLLIALLGSMWSFGGDATFLGFVGHVIAGSVWAIFHILIVLLQAFIFMMLTLVYLGQAHDAH
>NZ_CP004385.1|WP_025992327.1|421004_421535_-|ATP-synthase-subunit-I
MADRAPDKRHGDRRAGQRTVSGGVGRHESAADDWDAEQQEEDVVPLTRAEAQALFGPEVSQPSRVTPYRVVVAQMVLSLVATLAWWLFSRSPGAAAQSAFLGGAIGWVPSALFVARLRLSGAGTVMGWVAGEALKLGVTIAMFAAVAFGYPGVHWVPLLVTYLVVLKTYWIALAWR
>NZ_CP004385.1|WP_009910297.1|421805_422939_-|citrate-transporter
MSNSVVGRATARIIAFVRHEPVLSILVAALIALQLVRPQSAGALVRLVDWQTVATLAGLLMLTKALELSGFLMWLAHRIVHRVRSERALAALLVVFAASLSVWLTNDVALFVVIPLVLSLRELTPLPFKRLVIYIALAVNAGAIATPLGNPQNLFLWQLSGISFGRFVIALGPLALVLMALLLAMTAIAFDGRPLDLSKDHAERPVDRAHAFATVAMFAGFVLLADAHHALAGVLAVAAIFLIVRRDAVLKIDWLLLLIFVLMFIVLRSAALLPAVHRTIADIGLDTPLRAYAAGALLSQAISNVPAAILLSEFTRDWRALAFGVSVGGFGIAIGSLANLIAIRLSRARGMWLPFHLVSIPFGIASAVLGALLLHYF
>NZ_CP004385.1|WP_009910299.1|422945_423833_-|ParB/RepB/Spo0J-family-partition-protein
MNAVAKKKGLGRGLEALLGGSADITEAVKIEGAPNVLALGKLQAGKYQPRTRMDEGSLQELAASIRAQGVMQPILVRPISSDKFEIIAGERRFRAARLAGLEEVPVLVKDVSDQAAAAMALIENIQREDLNPLEEAHGIQRLLDEFGFTHEQAAESVGRSRSAVSNLLRLLNLAMPVQTMLLAGDLDMGHARALLAVDAATQITLAHQVVNKRMSVRETEKLVTHTTKSEPAVKARAKDDGGRDTRRLEEELSDLLASNVKIKVGRRGRGQLTIDFGDLDALEGILARLRGNVAA

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Crispr_ID: NZ_CP004385_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP004385_2

2079843-2079942

Orphan

Consensus_repeat	Method
GCGAAGTGCGTGCGCGGCGGCGCGCATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP004385_2

>merge|NZ_CP004385|2|2079843-2079942|CRISPRCasFinder
GCGAAGTGCGTGCGCGGCGGCGCGCATGCGGCGGTCAATGCGGTGGCGAAGCGGGGGGGGCGATGCGGGGGAGCGAAGCGCGTGCGCGGCGGCGCGCATG

>NZ_CP004385|2|2|2079843-2079942|CRISPRCasFinder
GCGAAGTGCGTGCGCGGCGGCGCGCATG	CGGCGGTCAATGCGGTGGCGAAGCGGGGGGGGCGATGCGGGGGA
GCGAAGCGCGTGCGCGGCGGCGCGCATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP004385.1\|WP_009890522.1\|2083524_2083734_-\|dodecin-domain-containing-protein	unknown	unknown	gnl\|CDD\|377810
NZ_CP004385.1\|WP_009890508.1\|2074776_2075301_+\|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase	unknown	unknown	gnl\|CDD\|225736
NZ_CP004385.1\|WP_004521233.1\|2087659_2088340_-\|PspA/IM30-family-protein	unknown	unknown	gnl\|CDD\|224755
NZ_CP004385.1\|WP_127462262.1\|2082828_2083470_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004385.1\|WP_009909173.1\|2083873_2084761_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NZ_CP004385.1\|WP_009890516.1\|2078003_2079206_-\|membrane-protein	unknown	unknown	gnl\|CDD\|368779
NZ_CP004385.1\|WP_009909169.1\|2075540_2076554_+\|allantoicase	unknown	unknown	gnl\|CDD\|237319
NZ_CP004385.1\|WP_009890546.1\|2088820_2091379_+\|penicillin-binding-protein-1A	unknown	unknown	gnl\|CDD\|227342
NZ_CP004385.1\|WP_009890502.1\|2070465_2071161_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP004385.1\|WP_009904901.1\|2080241_2081654_+\|8-oxoguanine-deaminase	unknown	unknown	gnl\|CDD\|236184
NZ_CP004385.1\|WP_038712601.1\|2072817_2073681_+\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|226611
NZ_CP004385.1\|WP_009890507.1\|2073826_2074780_+\|allantoinase-PuuE	unknown	unknown	gnl\|CDD\|211797
NZ_CP004385.1\|WP_009890543.1\|2086340_2087546_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP004385.1\|WP_004192898.1\|2085725_2086157_-\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|237569
NZ_CP004385.1\|WP_011402254.1\|2084911_2085400_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004385.1\|WP_009890521.1\|2081843_2082773_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176152
NZ_CP004385.1\|WP_080511499.1\|2079255_2079615_-\|hydroxyisourate-hydrolase	unknown	unknown	gnl\|CDD\|225226
NZ_CP004385.1\|WP_009890512.1\|2077449_2077788_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004385.1\|WP_009890510.1\|2076550_2077063_+\|ureidoglycolate-lyase	unknown	unknown	gnl\|CDD\|179606
NZ_CP004385.1\|WP_009909166.1\|2071274_2072807_+\|NCS1-family-nucleobase:cation-symporter-1	unknown	unknown	gnl\|CDD\|271404

Protein	Function_ID	Function_description	E-value
NZ_CP004385.1\|WP_009890522.1\|2083524_2083734_-\|dodecin-domain-containing-protein	gnl\|CDD\|377810	pfam07311, Dodecin, Dodecin. Dodecin is a flavin-binding protein,found in several bacteria and few archaea and represents a stand-alone version of the SHS2 domain. It most closely resembles the SHS2 domains of FtsA and Rpb7p, and represents a single domain small-molecule binding form.	1.01699e-32
NZ_CP004385.1\|WP_009890508.1\|2074776_2075301_+\|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase	gnl\|CDD\|225736	COG3195, COG3195, Uncharacterized protein conserved in bacteria [Function unknown].	2.06832e-76
NZ_CP004385.1\|WP_004521233.1\|2087659_2088340_-\|PspA/IM30-family-protein	gnl\|CDD\|224755	COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms].	5.00746e-22
NZ_CP004385.1\|WP_009909173.1\|2083873_2084761_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	3.27028e-78
NZ_CP004385.1\|WP_009890516.1\|2078003_2079206_-\|membrane-protein	gnl\|CDD\|368779	pfam06181, Urate_ox_N, Urate oxidase N-terminal. Cytochrome c urate oxidase (Uox) PuuD is involved in purine degradation. In contrast with soluble Uox it is a membrane protein with an 8-helix transmembrane N-terminal domain and a C-terminal cytochrome c.	0
NZ_CP004385.1\|WP_009909169.1\|2075540_2076554_+\|allantoicase	gnl\|CDD\|237319	PRK13257, PRK13257, allantoicase; Provisional.	0
NZ_CP004385.1\|WP_009890546.1\|2088820_2091379_+\|penicillin-binding-protein-1A	gnl\|CDD\|227342	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP004385.1\|WP_009890502.1\|2070465_2071161_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.67953e-47
NZ_CP004385.1\|WP_009904901.1\|2080241_2081654_+\|8-oxoguanine-deaminase	gnl\|CDD\|236184	PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase; Reviewed.	0
NZ_CP004385.1\|WP_038712601.1\|2072817_2073681_+\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|226611	COG4126, COG4126, Hydantoin racemase [Amino acid transport and metabolism].	4.13185e-80
NZ_CP004385.1\|WP_009890507.1\|2073826_2074780_+\|allantoinase-PuuE	gnl\|CDD\|211797	TIGR03212, uraD_N-term-dom, putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.	0
NZ_CP004385.1\|WP_009890543.1\|2086340_2087546_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.23436e-06
NZ_CP004385.1\|WP_004192898.1\|2085725_2086157_-\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|237569	PRK13952, mscL, large conductance mechanosensitive channel protein MscL.	2.50619e-80
NZ_CP004385.1\|WP_009890521.1\|2081843_2082773_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176152	cd08463, PBP2_DntR_like_4, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.40332e-127
NZ_CP004385.1\|WP_080511499.1\|2079255_2079615_-\|hydroxyisourate-hydrolase	gnl\|CDD\|225226	COG2351, COG2351, Transthyretin-like protein [General function prediction only].	2.56012e-65
NZ_CP004385.1\|WP_009890510.1\|2076550_2077063_+\|ureidoglycolate-lyase	gnl\|CDD\|179606	PRK03606, PRK03606, ureidoglycolate lyase.	4.0966e-102
NZ_CP004385.1\|WP_009909166.1\|2071274_2072807_+\|NCS1-family-nucleobase:cation-symporter-1	gnl\|CDD\|271404	cd11555, SLC-NCS1sbd_u1, uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily; solute-binding domain. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	0

>NZ_CP004385.1|WP_080511499.1|2079255_2079615_-|hydroxyisourate-hydrolase
MRMGKLTTHVLDTAHGRPGAAIKIELHAISGGGSRLLKTALTNDDGRCDAPLLEGDALAAGTYELVFHAGDYFAAQGVALPEPRFVDLVVLRFGVADPAAHYHVPLLVSPWSYSTYRGS
>NZ_CP004385.1|WP_009890516.1|2078003_2079206_-|membrane-protein
MEGFIIDWLNLAIRWLHVVAAIAWIGESFYFVALDNSLKPPKDAQLKSRGVFGELWHVHGGGFYNMQKYLVAPPEMPEDLHWSKWPSYTTWMSGFGLFFVLYLLAPNTYLIDRNVLDMGPVVAVASALGFLLAGWIVYDCACRMLGGRDKLLGVFVGLYVIAAAYIACHVFSGRAAYLIVGAMLATIMTANVFFVIIPGQRKMVDKLLKGETPDPIYGKRGKQRSVHNTYFTLPVVFAMLSNHYAMTYTNQYNWIVLVVIMLAGALIRQFFVMRHRGQQLWYLPLGGVALMLLALVTTMPKPIAPEAQAANAPNVPKLAIKDVAPILQQRCVACHSAKPTLVGSAPAGVMFDTSDEIARNAPRIYQQAVQLKAMPIGNLTHMTDDERTKIAAWFESGATK
>NZ_CP004385.1|WP_009890512.1|2077449_2077788_+|hypothetical-protein
MVIVGCIYLLVFAPLVYVLFLLHGMTIRLGGACLGIAAWVALSIAAIGIVRGWAWSRHWLIGGLIGLWIVSSNAGANGGDVAARGLDYICVALPLFTRRSTAFFRSRRDIEA
>NZ_CP004385.1|WP_009890510.1|2076550_2077063_+|ureidoglycolate-lyase
MNTLAIEPLTRAAFAPFGDVIETAGAKQIPINLGTTVRFHDLARIDVADEGGRPLVNLFRGQPRTLPFEVTMLERHPLGSQAFIPLTDRPYIVVVAPAGVLDPPKIRAFVTSGWQGVNYAKGVWHHPLIALGGVSDFIVVDRGGGGGNLDEQDLAGSLWLTEDALLAVSA
>NZ_CP004385.1|WP_009909169.1|2075540_2076554_+|allantoicase
MALPLSDPNAPEFTRRYVNLADPRLGAQALEASDDFFAPKERMLSPEPAVFIPGKYDDHGKWMDGWETRRKRTTGYDWCIVKLARPGVIKGFDIDTSHFTGNFPPAASIEAAHVPDGVPNEATKWVEVVPSTTLQGNSHHYVEARDANAYTHLRVNIYPDGGIARLRVYGQPQLDWAGASRSELFDLAAMDNGGYVVAANNQHFGLASNMLLPGRGVNMGDGWETRRRREPGNDWAIVALAQPGVIRKIEVDTAHFKGNFPDRCSVQAAYVTGGTDSSLVTQAMFWPVLLGEQKLQMDKQHVFEAELAALGPVTHVRLNIIPDGGVSRLRVWGTLDK
>NZ_CP004385.1|WP_009890508.1|2074776_2075301_+|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase
MMKAMRYTLEQLNAMSTEAFVAALSGIFEHSPWVAEAAAAARPFSSIDALHRTMRDAVDAAGDARQLALINAHPELAGKAAVRGELTAESTREQSGAGLDRCTQEEFDKLQRLNRAYREKFGFPFILAVRGYDRHGIIENFEARIDHTQDEELRASLGQIYRIARFRLDDLIDA
>NZ_CP004385.1|WP_009890507.1|2073826_2074780_+|allantoinase-PuuE
MAFDPNYPRDLVGYGRHPVQANWPGRARVAVQFVLNYEEGGENCVLHGDPASEQFLSEIVGAAAYPARHMSMESIYEYGSRAGVWRILREFDKRGLPLTVFGVGMAIERHPELARAFVEFGHEIACHGWRWIHYQDMTPEREAEHMKLGMEAIERVTGVRPLGWYTGRDSPNTHRLVAEYGGFLYDSDHYGDDLPFWMDVEVPGGARAPQLIVPYTLDANDMRFATPQGFNTADHFFHYLRDAFDVLYEEGDEAPKMMSIGMHCRLLGRPGRFRALQRFLDHIERHDRVWVARRVDIARHWREHHPYRPHARREGDA
>NZ_CP004385.1|WP_038712601.1|2072817_2073681_+|aspartate/glutamate-racemase-family-protein
MKIKLINPNTTQRMTDAMGRCAREVAAAGTAIVAVSPAMGPPSIEGHYDEALATPGLLAEVAAGERDGFDGYVIACFGDPGLYAARELARGPVIGIAEAAMHAASVLAPGFSVVTTLARTCGMAWHLAERYGMKRFCRNVRATDVAVLDLDRPGSAARRVIVDECRRALDEDGTDAIVLGCAGMAEFAHEIEAAIGAPVVEGVTAAVKWAEALIALKLATAKRGDFARPLAKRYDGEFARFSPDGAFARGAEAAAGAAVGPDAAAPGAAIQDARSPDAFAQPHIHSV
>NZ_CP004385.1|WP_009909166.1|2071274_2072807_+|NCS1-family-nucleobase:cation-symporter-1
MTIARLVRGRQGDVMAQFSVAQQSASYRPNEGRPGDPDGGAAMPAGYSKRLYNEDLAPLANQNWGAYNIFAFWMSDVHSVGGYVFAGSLFALGLTSWQVLAALIVGISIVNVLCNLIAKSSQQLGVPYPVACRATFGVLGANVPAVIRGLIAIAWYGIQTYLASSALVIVVLKFFPQWMPYADVHRYGFLGLSALGWAGFMLLWVLQAFVFWNGMETIKKFIDFAGPAVYVVMFVLAGYMVWRAGWRNIGLDLGGVKYHGAEVLPVMVTAISLVVSYFSGPMLNFGDFSRYCRSYGSVKRGNFWGLPVNFLAFSLVTVITTAATLPVFGQLITDPVETVGRIDHPTAVILGALTFTIATIGINIVANFVSPAFDFSNVAPRLISWRAGGMLAAVASVFITPWNLFNNPAVIHYTLDVLGSFIGPLYGVLIVDFYLVKRGALRRDDLYTTSADGAYWYRDGVNRRAVAALLPAAAIAVACVMVPAPSGLANFSWFIGAALGGAFYRALAKA
>NZ_CP004385.1|WP_009890502.1|2070465_2071161_+|GntR-family-transcriptional-regulator
MTKKDSALTGASPESIAERIRTAILEHRLAPGTKLTEAQLCEVFGVKRGTIRQALALLATDRLVDLEPNRGAFVASPTLQDVHEVFEMRRIVELAVMERLATGPGAKRLKGVAATIDKERHAFERRDFPAWIRLSGEFHTELAALTGNTVLRDCLGGLVARSTLMSALYESHGRSPCSFDDHAQILAALEAGDAKRAAQLMAHHLQHVELRMLDRPAQGAVDLREVFGHSG
>NZ_CP004385.1|WP_009904901.1|2080241_2081654_+|8-oxoguanine-deaminase
MERYSSARAGAQSQSPNRPRTLVVKHADVLVTMDGARRELRDAGLYVEDNRIVAVGPSAELPAQADEVLDLRGHLVIPGLVNTHHHMYQSLTRAIPAAQNAELFGWLTNLYRIWAHLTPEMIEVSALTAMAELLLSGCTTSSDHLYIYPNGSRLDDSIAAAQRIGMRFHASRGSMSVGQRDGGLPPDSVVEREPDILRDTQRVIETYHDEGRYAMLRVVVAPCSPFSVSRGLMRDAAALAREHRVSLHTHLAENANDVAYSRETFGMTPAEYAEDLGWVGRDVWHAHCVQLDESGIALFARTGTGVAHCPCSNMRLASGIAPVARMRVAGVPVGLGVDGSASNDGAQMVAEVRQALLLQRVGFGPDAMTARDALEIATLGGARVLNRDDIGALAPGMAADFVAFDLRTPQFAGALHDPVAALVFCAPSQAAYSVVNGRVVVREGRLTAFEIEPLVERHNALAKALCEAAR
>NZ_CP004385.1|WP_009890521.1|2081843_2082773_-|LysR-family-transcriptional-regulator
MSQQREAIDTYLLRVLHTLLMERSVTRAAVKLNQSQPAISAALRRLRDITGDPLLVRGKSGMVPTEYGLRLLEPVQNALREIERIKFQQHNFDPATSIRCYRIGCPDYLNVLFVPTVVERFRQAAPNATLEFHSLGPAFDYELALEDGKLDIVVGNWPEPPEQLHLSNLFVDEIVCLMSNAHPFAKRGGLTLDQYLNAPHLAPTPYSVGQRGAIDVHLARERLKRHVVVTLPYFNLAPYVLVKSDLIFTTTRLFADHYAKFLPLSVVPAPLDFPPMQYYQLWHERCHYSDEVRWLRGLVAEATRTLIDA
>NZ_CP004385.1|WP_127462262.1|2082828_2083470_-|hypothetical-protein
MERSFAREATVAPRHTRNACRILPLPRCGIRRNRHASRRTSRVSGERSSCPHDDLRRTARRRSFTAFRTAGPLAEIDAESATPSRATHNDNIAPTRIDTRDAPVRRADVRGRRVTGLASFARRRIDLFSSLVSPSSLAIHFLPPFLPPLFRTPFRIPFCAPFRHPFRDPHRRAFARLHRKLVTRRPRRSPVANRPRRARRLECAALDAPLCPY
>NZ_CP004385.1|WP_009890522.1|2083524_2083734_-|dodecin-domain-containing-protein
MNDHVYKLLELTGSSRQSSDDAIRNAISKAAKTMRNLHWFEVTDMRGHIEGDQVIHWQVTLKVGLRIED
>NZ_CP004385.1|WP_009909173.1|2083873_2084761_+|NAD(P)-dependent-oxidoreductase
MDVGFCGPGLMGAPMIRHLLSAGHRVHVWNRTRAKADALAAHGAQVVDTPAELAARAQTVMLCVLDAQAVGDVVFGASGVLAGDAAARCVTRIVDHSSIPPAATRAYAARAAALGASWVDAPVSGGVPGAEAGTLAVMAGGAQADVDAVRGLIGAYASRVTHLGDAGAGQTAKLCNQAIVTASVTAIAEAVGLAQASGIDAARLAEALAGGWADSVLLQTFVPRMTSTGHPPIGALKTFQKDVDAIADAARDAGAVMPVAATVQQVLRLGAAMGLAQADFAAFIDIVRPQAKRGE
>NZ_CP004385.1|WP_011402254.1|2084911_2085400_-|hypothetical-protein
MRMPHFLQLFLRRVFMSFPKKRRRAQPDGQESFLAVLRHAKPFAQLDTKIARARAQDEPVLYAHVLPGLDVLLCSVRGAQPPYPAIVELRKRCIESIANALEQPLDGLENGGYWYEANGFGFLVFASRARARILPEFGAGVKAGLRSGIGQPNAGDTTPRSL
>NZ_CP004385.1|WP_004192898.1|2085725_2086157_-|large-conductance-mechanosensitive-channel-protein-MscL
MSIIKEFKEFAVKGNVMDLAIGVIIGGAFSKIVDSVVKDLIMPVIGVLTGGLDFSNKFVLLGQIPASFKGNPESFKDLQAAGVATFGYGSFITVLINFIILAFIIFLMVKFINKLRKPEEAAPAATPEDVLLLREIRDSLKQR
>NZ_CP004385.1|WP_009890543.1|2086340_2087546_-|tetratricopeptide-repeat-protein
MKKLLAAVGLSLILVSAAANAAVPSLQQIQQSIAQGNWQRADAQLSQVIDAYPDNARARYLYGQVLDREGRPAEALAQIERAKSLDPQLRFTDPSRFAQTEARVRADARRATSAQSSRSATSGGMLVAPQTQGQAQSQFAAAPAAPAHRGPSAGMWIGFAVLIGAIVLVLRRTLRRARSADDQRAGDERRAQLKRATDVLNDVRPLKLDARLSTAPGAGALNGEIEALEAQARELVETLSNGQNPVPPYRLDELEKQFASLKARVEGRPDPGAASAAANAPGQTGSVFAQEADRLTGAQGQPPYSPYPPQPQQQPPVVIQQGGGFGGGMGGLLTGVLLGQAMSNGRDRVIEREVIVDDEARRRAGADPGIDFGQGDSWDSGGSDGGGIDLGSSGDDWSNNG
>NZ_CP004385.1|WP_004521233.1|2087659_2088340_-|PspA/IM30-family-protein
MSLFDSISRTIKGLLNDAADSVQDPSRDARQIVRELDDSIGRAENSLIEIEAQVATQRSKRDTADERAKKYEDGAKRALQSGDEALAREALAAQANAEAERDALARELDTLEPSVDKLKGQIADMRARRNDLNARSNILQAKQEIAQAKDVAATALGGIGGKNLSEDFQKLEDKVALSNARSDARLNSADTNSGRALDDKLAALNKGPSVEDRLEALKKQLNTPAQ
>NZ_CP004385.1|WP_009890546.1|2088820_2091379_+|penicillin-binding-protein-1A
MLEARLVRRPSDMPIIKRPPSSRATNEHHYSLRRSPAGAYYTDDDDGDDHASRRTNRDGGSRTFGSRVALWFVGLFATLLVVGALIVGYALVVMGPQLPSLDALTNYQPKVPLRVYSADHVLLGEFGEERRSLVRFADIPDVMKKAVLAIEDYRFYEHGGVDFVGILRAGVADLLHGGARQGASTITMQVARNFFLSSEKTYTRKIYEMLLAYKIERALTKDQILELYMNQIYLGQRAYGFAAAARVYFGKDLKDITLAEAAMLAGLPKAPSAYNPVVNPKRAKVRQEYILKRMLEIGYITQQQYDQAVKEEIHVRTPGNQYAVHGEYVAEMVRQMMYAQYKDETYTRGLTVTTTINAADQEAAYQAVRRGIMDYERRHGYRGPEGFVALPPAGDGRDEAIDDALADHPDNGDLQSAVVLAASPAALDVQFVGGATATINAAGLRFAAGALSSRASAALKIKPGSIVRVMKDAKGAWQIVQLPQVEGALVAVAPQDGAIRSLVGGFDFNKSKFNHVTQAWRQPGSSFKPFIYSASLEKGLGPATIINDAPLYFPPSVPGGQPWEPKDDDQPDGPMSMRTALQRSKNLVSIRILASIGTSYAQDYVTKRFGFDPAKTPPYLPMALGAGLVTPLQLAAGYAVFANGGYKVDPYLIAEVDDARGQALQKAQPVVAGASATRTIDARNAYVMNSLLHTVATAGTGAGTNALGRGDLQGKTGTTNDAKDGWFAGYQQSLVAVAWMGFDQPRSLGSREFGAQLALPIWVNYMRTALSGVPEQQMAMPDGLTTIDGELYYADRTPGAGFIANVDFNPAASPTVSANDALGSAGAAGLTPPPVTPEEKRQIIDMFEGNKP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

533549 : 590537

Moraxella_phage(17.65%)

integrase,transposase,tRNA

attL 533986:534013|attR 589565:589592

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009891862.1\|533549_534809_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-43	44.4
533986:534013	attL	NA	NA	NA	NA
WP_009910539.1\|535254_535698_+	hypothetical protein	NA	NA	NA	NA
WP_025992348.1\|535815_537429_+	recombinase family protein	E5DV73	Deep-sea_thermophilic_phage	6.2e-10	24.5
WP_025992349.1\|537425_538328_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_025992350.1\|538324_539227_+	chromosome partitioning protein ParB	NA	NA	NA	NA
WP_155295642.1\|539888_541061_+	hypothetical protein	NA	NA	NA	NA
WP_080556810.1\|541646_543317_-	hypothetical protein	A0A2L1IZ21	Streptomyces_phage	1.7e-26	33.6
WP_080750980.1\|543413_546143_-	hypothetical protein	NA	NA	NA	NA
WP_155295643.1\|546127_548125_-	hypothetical protein	NA	NA	NA	NA
WP_155295644.1\|548121_549417_-	hypothetical protein	NA	NA	NA	NA
WP_009910605.1\|549692_550421_-	hypothetical protein	NA	NA	NA	NA
WP_025992351.1\|550722_551190_+	hypothetical protein	NA	NA	NA	NA
WP_009910607.1\|551239_551683_-	hypothetical protein	A0A1V0EBJ7	Caulobacter_phage	6.7e-07	32.9
WP_155295645.1\|551811_553188_-	hypothetical protein	NA	NA	NA	NA
WP_080556807.1\|553514_555023_-	hypothetical protein	NA	NA	NA	NA
WP_080556808.1\|555019_555910_-	AAA family ATPase	NA	NA	NA	NA
WP_099975842.1\|555953_557915_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_099975843.1\|557928_558378_-	hypothetical protein	NA	NA	NA	NA
WP_080556806.1\|558836_559241_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_085955523.1\|560223_563307_+	restriction endonuclease	NA	NA	NA	NA
WP_009910465.1\|563308_566200_+	site-specific DNA-methyltransferase	G8I4P9	Mycobacterium_phage	6.3e-21	24.0
WP_009910466.1\|566199_568278_+	AAA family ATPase	A0A1V0SIN4	Klosneuvirus	1.7e-07	22.1
WP_050791339.1\|568570_569470_-	hypothetical protein	NA	NA	NA	NA
WP_009910468.1\|570012_571089_+	DUF262 domain-containing protein	A0A0R6PKN1	Moraxella_phage	7.7e-49	34.4
WP_009910470.1\|571089_571827_+	hypothetical protein	A0A0R6PKK0	Moraxella_phage	2.8e-10	30.3
WP_009910471.1\|571823_572891_+	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	1.4e-103	55.0
WP_009910472.1\|572844_573291_-	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	2.0e-14	40.4
WP_009888727.1\|573457_573865_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	3.1e-14	38.2
WP_009889515.1\|573861_574209_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.1e-40	72.0
WP_009889500.1\|574238_575810_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.7e-150	53.8
WP_009910190.1\|576463_578932_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	2.4e-114	34.4
WP_009906826.1\|579120_580224_-	DNA polymerase III subunit beta	B4UTW9	Rhizobium_phage	1.7e-46	34.0
WP_080511563.1\|580386_582150_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA
WP_004198824.1\|582442_582577_+	50S ribosomal protein L34	NA	NA	NA	NA
WP_009906635.1\|582650_583061_+	ribonuclease P protein component	NA	NA	NA	NA
WP_006024057.1\|583140_583410_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	1.3e-16	53.6
WP_009910184.1\|583418_585092_+	membrane protein insertase YidC	NA	NA	NA	NA
WP_011402627.1\|585232_585694_-	transcriptional regulator	NA	NA	NA	NA
WP_009910182.1\|585990_587394_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_155295674.1\|588831_590031_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	3.5e-42	42.2
589565:589592	attR	NA	NA	NA	NA
WP_025992318.1\|590240_590537_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

827431 : 874743

Pseudomonas_phage(20.0%)

plate,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080556792.1\|827431_827950_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.1e-21	52.5
WP_155295650.1\|828340_829312_+	hypothetical protein	NA	NA	NA	NA
WP_043295008.1\|829816_830986_+	hypothetical protein	NA	NA	NA	NA
WP_052122129.1\|830982_832455_+	AAA family ATPase	NA	NA	NA	NA
WP_043295010.1\|832821_833475_+	hypothetical protein	NA	NA	NA	NA
WP_155295651.1\|833605_834604_-	hypothetical protein	NA	NA	NA	NA
WP_155295652.1\|834735_836331_-	hypothetical protein	NA	NA	NA	NA
WP_059738270.1\|836731_837382_-	abortive infection family protein	NA	NA	NA	NA
WP_043295014.1\|837388_837700_-	hypothetical protein	NA	NA	NA	NA
WP_043295015.1\|837746_838052_-	hypothetical protein	NA	NA	NA	NA
WP_043295346.1\|838404_839412_-	hypothetical protein	NA	NA	NA	NA
WP_043295348.1\|839579_840542_-	hypothetical protein	A0A0A8J8N7	Ralstonia_phage	1.0e-63	46.7
WP_043295017.1\|841246_841588_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_043295018.1\|841565_842204_-	hypothetical protein	NA	NA	NA	NA
WP_043295021.1\|842205_842505_-	hypothetical protein	NA	NA	NA	NA
WP_155295653.1\|842519_842906_-	hypothetical protein	NA	NA	NA	NA
WP_043295024.1\|843008_843815_-	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_043295026.1\|843879_844965_-	hypothetical protein	NA	NA	NA	NA
WP_043295028.1\|844961_845867_-	hypothetical protein	NA	NA	NA	NA
WP_043295030.1\|845940_846168_-	hypothetical protein	NA	NA	NA	NA
WP_043295032.1\|846178_847174_-	endonuclease	A6XMH8	Bacillus_virus	3.1e-52	38.4
WP_043295353.1\|847247_848216_-	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	2.4e-57	41.7
WP_080750985.1\|848323_848665_-	hypothetical protein	NA	NA	NA	NA
WP_043295034.1\|848926_849847_+	WYL domain-containing protein	NA	NA	NA	NA
WP_155295654.1\|849864_850104_+	hypothetical protein	NA	NA	NA	NA
WP_043295036.1\|850103_852494_+	SAM-dependent DNA methyltransferase	NA	NA	NA	NA
WP_043295038.1\|852493_853909_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_043295039.1\|853895_856892_+	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_043295041.1\|857021_858110_+	hypothetical protein	NA	NA	NA	NA
WP_043295043.1\|858106_858601_+	hypothetical protein	NA	NA	NA	NA
WP_043295045.1\|858597_860475_+	AAA family ATPase	NA	NA	NA	NA
WP_052122132.1\|861113_861458_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_043295047.1\|861525_862890_-	DUF4102 domain-containing protein	NA	NA	NA	NA
WP_107645272.1\|863606_863831_-\|transposase	transposase	NA	NA	NA	NA
WP_009891862.1\|864361_865621_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-43	44.4
WP_009888580.1\|865731_866517_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_009888581.1\|866513_867860_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_038708129.1\|867968_868583_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_011402551.1\|868956_869646_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_009888592.1\|869682_870201_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_009888594.1\|870217_871708_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_009906860.1\|871780_872284_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_080511549.1\|872311_872824_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_080511672.1\|872916_874743_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_3

1178022 : 1187253

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009889255.1\|1178022_1179975_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	1.2e-148	49.5
WP_009889258.1\|1180238_1181369_+	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	1.8e-24	38.0
WP_038712436.1\|1181400_1183410_+	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	1.7e-52	35.2
WP_009904054.1\|1183585_1184401_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	3.3e-36	32.9
WP_009889263.1\|1184465_1185149_-	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	3.3e-05	26.0
WP_009889265.1\|1185145_1185673_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_009889266.1\|1185708_1187253_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	3.3e-24	31.2

DBSCAN-SWA_4

1431323 : 1440265

Staphylococcus_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009889661.1\|1431323_1432460_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.7e-49	36.0
WP_155295660.1\|1433157_1433940_-	hypothetical protein	NA	NA	NA	NA
WP_107645277.1\|1433867_1434497_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.5e-31	69.6
WP_009888727.1\|1434493_1434901_-\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	3.1e-14	38.2
WP_009891862.1\|1435177_1436437_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-43	44.4
WP_080713227.1\|1437467_1437695_-	helicase	NA	NA	NA	NA
WP_009889671.1\|1437833_1438061_+	transcriptional regulator	NA	NA	NA	NA
WP_009889673.1\|1438057_1438441_+	type II toxin-antitoxin system death-on-curing family toxin	A0A1B3AYM0	Gordonia_phage	9.9e-07	43.6
WP_009889675.1\|1438484_1439114_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.4e-26	36.2
WP_011402095.1\|1439128_1440265_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	4.3e-42	32.9

DBSCAN-SWA_5

1549527 : 1558175

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009908912.1\|1549527_1550928_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.1e-79	38.7
WP_080511617.1\|1550959_1551883_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.3e-15	27.9
WP_009908914.1\|1551940_1552933_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	9.1e-28	30.9
WP_009889858.1\|1553004_1553322_+	competence protein ComE	NA	NA	NA	NA
WP_009904404.1\|1553656_1554559_+	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	4.3e-53	39.9
WP_085952901.1\|1554653_1555946_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_009889864.1\|1556073_1556997_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	3.2e-43	36.2
WP_025369235.1\|1557332_1558175_-	alpha/beta hydrolase	A7K906	Acanthocystis_turfacea_chlorella_virus	3.8e-11	24.6

DBSCAN-SWA_6

1835484 : 1924487

uncultured_Caudovirales_phage(23.26%)

plate,tRNA,integrase,tail,portal,protease,capsid,terminase,head

attL 1864855:1864874|attR 1906123:1906142

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009890173.1\|1835484_1837011_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	7.3e-85	36.2
WP_099005209.1\|1837083_1838188_-	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	2.2e-06	37.1
WP_009909025.1\|1838415_1840110_-	single-stranded-DNA-specific exonuclease RecJ	A0A0K2FM92	Brevibacillus_phage	1.4e-28	27.5
WP_025369276.1\|1840125_1841211_-	hypothetical protein	NA	NA	NA	NA
WP_009890181.1\|1841540_1842794_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_009890182.1\|1842813_1843536_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	3.1e-33	38.2
WP_009890183.1\|1843540_1844329_+	TatD family hydrolase	NA	NA	NA	NA
WP_009909028.1\|1844382_1846920_+	ComEC/Rec2 family competence protein	NA	NA	NA	NA
WP_009890187.1\|1846956_1847784_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_009890189.1\|1848026_1849688_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.4e-150	52.0
WP_009890191.1\|1849684_1850539_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.0e-48	41.3
WP_009890193.1\|1850643_1851927_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	9.3e-150	62.1
WP_009890195.1\|1852018_1852450_+	cell division protein FtsB	NA	NA	NA	NA
WP_009890196.1\|1852611_1852956_-	hypothetical protein	NA	NA	NA	NA
WP_009904690.1\|1853044_1853995_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_009890200.1\|1854033_1854558_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_080511492.1\|1854703_1855555_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_085955518.1\|1855829_1856732_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_085955519.1\|1856933_1857773_+	PHP domain-containing protein	NA	NA	NA	NA
WP_009890207.1\|1857836_1858466_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_009890209.1\|1858564_1859230_+\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_009890211.1\|1859238_1860441_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_025369277.1\|1860437_1861055_+	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_009909031.1\|1861099_1862002_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_009890216.1\|1862112_1863255_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_009890218.1\|1863261_1864038_+	MBL fold metallo-hydrolase	U5PVD0	Bacillus_phage	1.9e-09	26.6
WP_080511493.1\|1864218_1864473_-	hypothetical protein	NA	NA	NA	NA
WP_080556751.1\|1864704_1865868_-	cupin domain-containing protein	NA	NA	NA	NA
1864855:1864874	attL	NA	NA	NA	NA
WP_009909034.1\|1865960_1866506_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_009890224.1\|1866485_1867784_-	hypothetical protein	NA	NA	NA	NA
WP_155295676.1\|1867770_1870440_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	1.7e-28	24.0
WP_011402202.1\|1870611_1871913_+\|integrase	integrase family protein	C7BGE7	Burkholderia_phage	3.0e-148	58.9
WP_009890227.1\|1871863_1872106_-	AlpA family phage regulatory protein	C7BGF0	Burkholderia_phage	9.3e-19	59.2
WP_009909036.1\|1872114_1872588_-	hypothetical protein	B5TA88	Burkholderia_phage	2.3e-05	71.4
WP_004555250.1\|1872596_1872926_-	hypothetical protein	NA	NA	NA	NA
WP_009909037.1\|1873039_1874356_-	hypothetical protein	NA	NA	NA	NA
WP_004534278.1\|1874355_1874805_-	hypothetical protein	NA	NA	NA	NA
WP_004534172.1\|1874801_1875407_-	hypothetical protein	NA	NA	NA	NA
WP_004534202.1\|1875403_1875739_-	hypothetical protein	NA	NA	NA	NA
WP_004550209.1\|1875790_1876009_-	hypothetical protein	NA	NA	NA	NA
WP_128972304.1\|1876137_1876593_-	hypothetical protein	NA	NA	NA	NA
WP_009909040.1\|1876540_1877026_-	helix-turn-helix transcriptional regulator	A0A193GYL7	Enterobacter_phage	4.4e-12	41.2
WP_038707945.1\|1877175_1877403_+	hypothetical protein	NA	NA	NA	NA
WP_009909041.1\|1877491_1878019_+	hypothetical protein	C7BGG0	Burkholderia_phage	9.7e-29	46.5
WP_080556752.1\|1878032_1878365_+	hypothetical protein	NA	NA	NA	NA
WP_004538501.1\|1878372_1878828_-	hypothetical protein	NA	NA	NA	NA
WP_025992235.1\|1878829_1879288_+	hypothetical protein	NA	NA	NA	NA
WP_009909046.1\|1879661_1880132_+	hypothetical protein	NA	NA	NA	NA
WP_009909047.1\|1880251_1882744_+	virulence protein E	A0A2D1GN57	Marinobacter_phage	1.9e-98	41.8
WP_009909048.1\|1882961_1883549_+	hypothetical protein	NA	NA	NA	NA
WP_004538506.1\|1883929_1884778_+	DUF4747 family protein	NA	NA	NA	NA
WP_144241902.1\|1884946_1885378_+	hypothetical protein	NA	NA	NA	NA
WP_009909051.1\|1885527_1886097_+	hypothetical protein	NA	NA	NA	NA
WP_009909052.1\|1886059_1888045_+\|terminase	phage terminase large subunit family protein	A0A2D1GMT1	Marinobacter_phage	1.6e-180	53.4
WP_004533700.1\|1888055_1888262_+	hypothetical protein	NA	NA	NA	NA
WP_025992236.1\|1888258_1889752_+\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	3.7e-134	50.8
WP_009909056.1\|1889748_1890849_+\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	3.0e-48	36.1
WP_025992237.1\|1890875_1891220_+\|head	head decoration protein	NA	NA	NA	NA
WP_004550216.1\|1891254_1892280_+\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	1.7e-109	59.1
WP_009909060.1\|1892283_1892574_+	hypothetical protein	NA	NA	NA	NA
WP_004539763.1\|1892575_1893106_+\|tail	phage tail protein	A0A2H4JBV1	uncultured_Caudovirales_phage	9.2e-11	28.0
WP_004533675.1\|1893095_1893629_+	hypothetical protein	Q9JML9	Wolbachia_phage	6.2e-23	39.5
WP_004533661.1\|1893631_1894312_+\|plate	phage baseplate assembly protein V	A0A1B2LRU5	Wolbachia_phage	1.2e-18	34.4
WP_004547866.1\|1894376_1894583_+	hypothetical protein	NA	NA	NA	NA
WP_004533690.1\|1894579_1894924_+	hypothetical protein	A0A2H4JA09	uncultured_Caudovirales_phage	1.4e-23	50.9
WP_009909065.1\|1894920_1895814_+\|plate	baseplate J protein	A0A1J0I2M3	Salmonella_phage	8.4e-49	40.5
WP_004547894.1\|1895806_1896382_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.0e-32	47.7
WP_043295120.1\|1896369_1897833_+	hypothetical protein	A4JWL8	Burkholderia_virus	1.6e-214	78.2
WP_009909071.1\|1897848_1898301_+\|tail	tail assembly chaperone	A4JWL9	Burkholderia_virus	4.8e-45	77.7
WP_012730181.1\|1898366_1899536_+\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	1.4e-160	72.9
WP_004533620.1\|1899546_1900050_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	1.2e-41	50.0
WP_004533642.1\|1900119_1900422_+\|tail	phage tail assembly protein	V5YST8	Pseudomonas_phage	1.5e-05	37.2
WP_009909075.1\|1900509_1902924_+\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	4.0e-69	34.7
WP_009909076.1\|1902932_1903814_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	5.0e-30	37.4
WP_004540041.1\|1903788_1903995_+\|tail	phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	4.0e-15	61.2
WP_009909079.1\|1904004_1905057_+	phage late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	7.0e-79	44.8
WP_004533694.1\|1905132_1905327_+	hypothetical protein	NA	NA	NA	NA
WP_004539628.1\|1905319_1905817_+	lysozyme	A4JX20	Burkholderia_virus	2.2e-67	78.2
WP_009909080.1\|1905816_1906362_+	lysozyme	Q8W6S5	Burkholderia_virus	9.6e-80	92.3
1906123:1906142	attR	NA	NA	NA	NA
WP_009890252.1\|1906505_1907294_+	DNA adenine methylase	Q8W6S4	Burkholderia_virus	1.0e-151	97.3
WP_009890254.1\|1907334_1908045_-	hypothetical protein	A4PE26	Ralstonia_virus	4.1e-38	41.5
WP_119027180.1\|1908056_1908659_-	hypothetical protein	NA	NA	NA	NA
WP_011402208.1\|1908543_1909017_-	hypothetical protein	NA	NA	NA	NA
WP_011402209.1\|1909009_1909519_-	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	3.0e-19	40.1
WP_009910666.1\|1909515_1909941_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	8.4e-15	47.0
WP_043295122.1\|1910450_1911008_+	hypothetical protein	NA	NA	NA	NA
WP_009910405.1\|1912631_1912904_+	hypothetical protein	NA	NA	NA	NA
WP_009890278.1\|1913168_1913972_-	inositol monophosphatase	NA	NA	NA	NA
WP_009890279.1\|1914274_1915195_+	RNA methyltransferase	NA	NA	NA	NA
WP_009890280.1\|1915396_1916179_+	serine O-acetyltransferase	NA	NA	NA	NA
WP_009890284.1\|1916521_1917322_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_009890286.1\|1917345_1917837_-	peptidyl-prolyl cis-trans isomerase	A0A2H4UTF4	Bodo_saltans_virus	8.2e-06	29.8
WP_009890287.1\|1917917_1918493_-	peptidyl-prolyl cis-trans isomerase	A0A1V0SCU1	Indivirus	2.4e-12	40.0
WP_009890289.1\|1918548_1919214_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_009890291.1\|1919501_1920899_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	2.4e-42	33.8
WP_009890293.1\|1920946_1921885_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA
WP_009890295.1\|1921987_1922959_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_011402215.1\|1923002_1924487_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA

DBSCAN-SWA_7

2375302 : 2423306

Burkholderia_virus(61.22%)

plate,transposase,holin,terminase,portal,protease,tail,capsid,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011401137.1\|2375302_2376571_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	9.8e-43	42.7
WP_009891053.1\|2377506_2378406_+	hypothetical protein	A0JC16	Ralstonia_phage	1.2e-34	37.7
WP_009891055.1\|2378487_2378673_+	hypothetical protein	NA	NA	NA	NA
WP_025369360.1\|2378793_2379054_+	hypothetical protein	NA	NA	NA	NA
WP_043037066.1\|2379140_2379350_+	hypothetical protein	NA	NA	NA	NA
WP_009909341.1\|2379386_2379716_-	helix-turn-helix domain-containing protein	R4JEU7	Burkholderia_phage	1.6e-29	58.7
WP_009909343.1\|2379967_2380120_+	hypothetical protein	R4JMC2	Burkholderia_phage	3.4e-11	66.0
WP_009909344.1\|2380107_2380890_+	hypothetical protein	A4JWW8	Burkholderia_virus	9.7e-142	98.8
WP_011205516.1\|2381023_2381209_+	hypothetical protein	A4JWW7	Burkholderia_virus	4.3e-24	100.0
WP_009897093.1\|2381205_2381427_+	hypothetical protein	A4JWW6	Burkholderia_virus	1.6e-38	100.0
WP_009909345.1\|2381430_2381646_+	hypothetical protein	A4JWW5	Burkholderia_virus	7.9e-30	98.6
WP_009909346.1\|2381654_2381792_+	hypothetical protein	A4JWW4	Burkholderia_virus	1.8e-11	71.1
WP_009909347.1\|2381948_2382167_+	hypothetical protein	NA	NA	NA	NA
WP_025992260.1\|2382338_2383847_+	DNA cytosine methyltransferase	Q6V7R9	Burkholderia_virus	2.4e-64	38.1
WP_009909351.1\|2383846_2385640_+	replication endonuclease	A4JWW0	Burkholderia_virus	0.0e+00	97.3
WP_009909352.1\|2385655_2385922_+	ogr/Delta-like zinc finger family protein	A4JWV9	Burkholderia_virus	9.5e-41	94.1
WP_004532731.1\|2385918_2386125_+	bacteriophage-acquired protein	A4JWV8	Burkholderia_virus	8.7e-34	100.0
WP_011205518.1\|2386211_2386868_+	AAA family ATPase	A4JWV7	Burkholderia_virus	3.8e-115	100.0
WP_011205519.1\|2387068_2387224_+	CopG family transcriptional regulator	A4JWV6	Burkholderia_virus	1.6e-19	98.0
WP_004532793.1\|2387326_2387860_+	bacteriophage gp29 protein	A4JWV5	Burkholderia_virus	8.4e-97	100.0
WP_004532838.1\|2387856_2388594_+	VRR-NUC domain-containing protein	A4JWV4	Burkholderia_virus	1.0e-132	99.6
WP_076850489.1\|2388602_2389724_+	DUF3396 domain-containing protein	A4JWV3	Burkholderia_virus	3.7e-219	99.7
WP_011204767.1\|2390288_2390612_+	type II toxin-antitoxin system RelE/ParE family toxin	A4JWV2	Burkholderia_virus	1.1e-54	98.1
WP_004202809.1\|2390614_2390971_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	3.9e-42	100.0
WP_009909353.1\|2391014_2392070_-\|portal	phage portal protein	A4JWV0	Burkholderia_virus	5.7e-206	99.4
WP_009909354.1\|2392066_2393836_-\|terminase	terminase ATPase subunit family protein	K4NXI4	Burkholderia_phage	0.0e+00	99.7
WP_004532870.1\|2393979_2394789_+\|capsid	GPO family capsid scaffolding protein	A4JWU8	Burkholderia_virus	3.2e-148	100.0
WP_004532901.1\|2394822_2395836_+\|capsid	phage major capsid protein, P2 family	A4JWU7	Burkholderia_virus	5.5e-190	100.0
WP_004531049.1\|2395832_2396522_+\|terminase	bacteriophage terminase endonuclease subunit	K4NX86	Burkholderia_phage	2.5e-117	100.0
WP_009909356.1\|2396621_2397101_+\|head	head completion/stabilization protein	A4JWU5	Burkholderia_virus	5.8e-81	100.0
WP_004524437.1\|2397100_2397352_+	hypothetical protein	K4NXI9	Burkholderia_phage	7.6e-40	100.0
WP_004524438.1\|2397348_2397555_+\|tail	tail protein	K4PAW7	Burkholderia_phage	2.4e-31	100.0
WP_004524439.1\|2397569_2397914_+	membrane protein	K4NZQ3	Burkholderia_phage	2.9e-50	100.0
WP_004524440.1\|2397915_2398188_+\|holin	phage holin family protein	K4NX91	Burkholderia_phage	8.8e-42	100.0
WP_009909360.1\|2398184_2398997_+	DUF3380 domain-containing protein	A4JWU0	Burkholderia_virus	6.9e-151	100.0
WP_009909361.1\|2398993_2399434_+	phage-encoded lipoprotein	K4NXJ2	Burkholderia_phage	4.7e-69	98.6
WP_009909362.1\|2399538_2399955_+\|tail	phage tail protein	A4JWT7	Burkholderia_virus	1.2e-71	99.3
WP_009909364.1\|2399951_2400419_+	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	5.0e-77	98.1
WP_155295666.1\|2400618_2401599_+	hypothetical protein	Q06VL9	Trichoplusia_ni_ascovirus	5.1e-15	29.1
WP_155295667.1\|2401663_2401987_+	hypothetical protein	NA	NA	NA	NA
WP_080556767.1\|2402062_2402935_-	site-specific DNA-methyltransferase	A4JWY5	Burkholderia_virus	1.2e-156	96.4
WP_009909368.1\|2403009_2403690_+\|plate	phage baseplate assembly protein V	A4JWY4	Burkholderia_virus	9.3e-117	95.1
WP_004556607.1\|2403686_2404049_+\|plate	phage baseplate assembly protein	K4PAX6	Burkholderia_phage	5.0e-61	99.2
WP_004524450.1\|2404045_2404951_+\|plate	phage baseplate assembly protein	A4JWT1	Burkholderia_virus	3.6e-164	100.0
WP_009897027.1\|2404943_2405498_+\|tail	phage tail protein I	A4JWT0	Burkholderia_virus	3.8e-100	100.0
WP_080556768.1\|2405499_2407872_+\|tail	phage tail protein	K4NZW8	Burkholderia_phage	0.0e+00	99.5
WP_009909370.1\|2407888_2408560_+\|tail	phage tail fiber assembly protein	A4JWS8	Burkholderia_virus	4.1e-117	100.0
WP_009909371.1\|2408615_2409788_+\|tail	phage tail sheath protein	Q45YG5	Burkholderia_virus	8.9e-224	99.7
WP_014696837.1\|2409803_2410313_+\|tail	phage major tail tube protein	K4NZR9	Burkholderia_phage	3.2e-93	98.8
WP_004531064.1\|2410370_2410715_+\|tail	phage tail assembly protein	K4NXA3	Burkholderia_phage	1.0e-55	100.0
WP_004552648.1\|2410723_2410837_+\|tail	GpE family phage tail protein	A0A089FGX3	Burkholderia_phage	5.4e-14	100.0
WP_080556769.1\|2410833_2413800_+	hypothetical protein	A4JWX4	Burkholderia_virus	0.0e+00	99.0
WP_009909375.1\|2413817_2414243_+\|tail	phage tail protein	A4JWS2	Burkholderia_virus	1.7e-71	98.6
WP_009909377.1\|2414242_2415343_+	phage late control D family protein	K4PAY4	Burkholderia_phage	4.0e-202	99.2
WP_006027238.1\|2415415_2415634_-	hypothetical protein	NA	NA	NA	NA
WP_009909378.1\|2415714_2416035_-	hypothetical protein	NA	NA	NA	NA
WP_009909379.1\|2418339_2420373_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_127446386.1\|2420486_2421482_+	hypothetical protein	NA	NA	NA	NA
WP_009891062.1\|2421543_2422569_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_009891064.1\|2422955_2423306_+\|protease	serine protease	NA	NA	NA	NA

DBSCAN-SWA_8

2799959 : 2867946

uncultured_Caudovirales_phage(33.33%)

plate,transposase,tRNA,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009891699.1\|2799959_2802584_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	7.1e-80	39.2
WP_009891700.1\|2803025_2804246_+	CoA transferase	NA	NA	NA	NA
WP_009909736.1\|2804335_2805142_+	hypothetical protein	NA	NA	NA	NA
WP_009891706.1\|2806162_2807872_+\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	2.8e-186	56.9
WP_009891707.1\|2808166_2808643_-	NUDIX hydrolase	A0A2I6PFL2	Proteus_phage	2.0e-20	41.3
WP_009909742.1\|2808661_2809048_-	hypothetical protein	NA	NA	NA	NA
WP_080556782.1\|2809334_2811383_-	glycoside hydrolase family 3 protein	NA	NA	NA	NA
WP_009905872.1\|2811359_2811539_+	hypothetical protein	NA	NA	NA	NA
WP_009891712.1\|2811535_2812396_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_080511657.1\|2812441_2813578_-	cytochrome-c peroxidase	NA	NA	NA	NA
WP_009891716.1\|2814066_2815650_+	acid phosphatase	NA	NA	NA	NA
WP_009891718.1\|2815874_2817068_+	trans-2-enoyl-CoA reductase family protein	NA	NA	NA	NA
WP_043295171.1\|2817085_2817928_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_154660009.1\|2818172_2818415_+	hypothetical protein	NA	NA	NA	NA
WP_009891722.1\|2818625_2819258_-	response regulator transcription factor	NA	NA	NA	NA
WP_025369426.1\|2819258_2821331_-	response regulator	A0A1V0SGR3	Hokovirus	5.0e-12	25.9
WP_009891727.1\|2821741_2822707_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_080713235.1\|2822722_2825071_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_009909750.1\|2825178_2826018_-	molecular chaperone	NA	NA	NA	NA
WP_009891731.1\|2826035_2826560_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_009891732.1\|2826642_2827203_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_025369429.1\|2827255_2827801_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_009891734.1\|2828603_2829497_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_080511534.1\|2829661_2829847_+	hypothetical protein	NA	NA	NA	NA
WP_011402450.1\|2829912_2831202_+	MFS transporter	NA	NA	NA	NA
WP_009909753.1\|2831246_2832173_+	amidohydrolase family protein	NA	NA	NA	NA
WP_009891738.1\|2832464_2832701_+	hypothetical protein	NA	NA	NA	NA
WP_009891740.1\|2832658_2832940_+	H-NS histone family protein	NA	NA	NA	NA
WP_080511535.1\|2833139_2833442_-	hypothetical protein	NA	NA	NA	NA
WP_009891744.1\|2834152_2835466_-	divalent metal cation transporter	NA	NA	NA	NA
WP_004543837.1\|2837947_2838256_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_080556783.1\|2839363_2839633_+	hypothetical protein	NA	NA	NA	NA
WP_080556784.1\|2840180_2840549_-	hypothetical protein	NA	NA	NA	NA
WP_080751010.1\|2841196_2844019_-	hypothetical protein	NA	NA	NA	NA
WP_009909762.1\|2844039_2844915_-	hypothetical protein	NA	NA	NA	NA
WP_009909763.1\|2844916_2847751_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.0e-27	24.1
WP_009909765.1\|2847763_2848069_-	hypothetical protein	NA	NA	NA	NA
WP_009891776.1\|2848086_2848419_-	hypothetical protein	NA	NA	NA	NA
WP_080511661.1\|2848552_2848765_-	hypothetical protein	NA	NA	NA	NA
WP_009909766.1\|2848901_2849393_-	hypothetical protein	NA	NA	NA	NA
WP_009891777.1\|2849370_2852706_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_080750995.1\|2852814_2855217_-	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_011402455.1\|2855213_2855813_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_025369435.1\|2855809_2856367_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_038712723.1\|2856494_2858903_-	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_011402458.1\|2858899_2859499_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_038713115.1\|2859495_2860053_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_009891787.1\|2860189_2861023_-	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_009909781.1\|2861025_2863824_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.2e-27	24.1
WP_009891791.1\|2864349_2864616_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_009891792.1\|2864639_2866067_+	hypothetical protein	NA	NA	NA	NA
WP_009910382.1\|2866095_2867946_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_9

2959944 : 3015011

Burkholderia_phage(56.6%)

terminase,integrase,head

attL 2959826:2959845|attR 3015163:3015182

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2959826:2959845	attL	NA	NA	NA	NA
WP_043295185.1\|2959944_2960421_-	DUF2514 family protein	Q6J1Q4	Burkholderia_virus	8.4e-56	78.2
WP_038792826.1\|2960417_2960963_-	hypothetical protein	NA	NA	NA	NA
WP_043295188.1\|2960959_2961457_-	lysozyme	Q3HQU9	Burkholderia_phage	1.4e-82	92.1
WP_006495243.1\|2961449_2961632_-	hypothetical protein	NA	NA	NA	NA
WP_043295190.1\|2961802_2962075_+	hypothetical protein	NA	NA	NA	NA
WP_080750996.1\|2962071_2962833_+	SGNH/GDSL hydrolase family protein	A0A1P8L663	Pectobacterium_phage	2.7e-11	28.7
WP_080750997.1\|2962836_2963988_+	acyltransferase	A0A166XZF2	Gordonia_phage	1.2e-12	27.3
WP_043295379.1\|2964184_2964889_-	hypothetical protein	A9YX14	Burkholderia_phage	1.0e-94	82.5
WP_009927676.1\|2965678_2966341_-	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	1.1e-125	100.0
WP_043295193.1\|2966340_2967522_-	bacteriophage protein	A9YX12	Burkholderia_phage	2.2e-198	94.4
WP_041221269.1\|2967518_2967872_-	hypothetical protein	A9YX11	Burkholderia_phage	2.7e-59	100.0
WP_041221271.1\|2967956_2968952_-	hypothetical protein	A9YX09	Burkholderia_phage	1.9e-182	99.7
WP_041221272.1\|2969089_2969830_-	phage protein	A9YX06	Burkholderia_phage	3.7e-135	100.0
WP_009927683.1\|2969833_2970211_+	hypothetical protein	A9YX05	Burkholderia_phage	3.2e-66	99.2
WP_009927684.1\|2970207_2971176_-	hypothetical protein	A9YX04	Burkholderia_phage	1.0e-164	100.0
WP_009927685.1\|2971172_2971490_-	hypothetical protein	NA	NA	NA	NA
WP_041221276.1\|2971489_2972065_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	5.8e-19	36.0
WP_041221278.1\|2972061_2974083_-	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	A0A2H4J9N7	uncultured_Caudovirales_phage	1.5e-40	31.0
WP_043295381.1\|2974266_2974830_-	hypothetical protein	A0A0N7IRF3	Acinetobacter_phage	2.8e-18	34.8
WP_051392327.1\|2974907_2975456_+	hypothetical protein	G0ZNE5	Cronobacter_phage	4.7e-18	36.8
WP_043295196.1\|2975452_2975893_-	DUF3277 family protein	A0A0P0IKY2	Acinetobacter_phage	1.9e-41	57.5
WP_043295198.1\|2975908_2977384_-	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	1.8e-112	48.1
WP_043295200.1\|2977393_2977984_-	hypothetical protein	A9YX29	Burkholderia_phage	1.6e-101	92.9
WP_043295202.1\|2977988_2978360_-	hypothetical protein	A9YX28	Burkholderia_phage	4.7e-62	93.5
WP_043295204.1\|2978419_2978899_-	hypothetical protein	A9YX26	Burkholderia_phage	8.7e-69	85.5
WP_043295205.1\|2978927_2979311_-	DUF4054 domain-containing protein	A9YX25	Burkholderia_phage	3.3e-63	96.9
WP_009927901.1\|2979374_2979842_-	hypothetical protein	A9YX24	Burkholderia_phage	2.2e-32	100.0
WP_043295207.1\|2979843_2980935_-	DUF2184 domain-containing protein	A9YX23	Burkholderia_phage	9.9e-161	98.7
WP_043295209.1\|2981003_2981510_-	hypothetical protein	NA	NA	NA	NA
WP_043295211.1\|2981519_2982986_-	DUF2213 domain-containing protein	A9YX03	Burkholderia_phage	2.7e-209	88.5
WP_038782760.1\|2983131_2983653_-	hypothetical protein	A9YX01	Burkholderia_phage	2.8e-89	94.2
WP_043295213.1\|2983733_2984492_-\|head	head morphogenesis protein	A9YWZ8	Burkholderia_phage	7.0e-129	94.0
WP_043295215.1\|2984756_2986223_-	DUF1073 domain-containing protein	A9YWZ7	Burkholderia_phage	2.2e-264	94.8
WP_043295217.1\|2986243_2987797_-\|terminase	phage terminase large subunit	H9C0C7	Vibrio_phage	3.9e-110	44.5
WP_043295219.1\|2987747_2988227_-	DUF2280 domain-containing protein	A9YWZ5	Burkholderia_phage	4.2e-55	76.3
WP_077056326.1\|2988261_2988813_-	hypothetical protein	A0A0N9BAQ5	Vibrio_phage	4.1e-22	38.6
WP_043295221.1\|2988782_2989442_-	hypothetical protein	A9YWZ4	Burkholderia_phage	2.7e-97	75.1
WP_052122141.1\|2989571_2990231_-	hypothetical protein	NA	NA	NA	NA
WP_043295222.1\|2990227_2990557_-	hypothetical protein	A9YWZ0	Burkholderia_phage	1.9e-30	71.1
WP_043295224.1\|2990566_2991037_-	RusA family crossover junction endodeoxyribonuclease	A9YWY9	Burkholderia_phage	3.7e-72	87.8
WP_155295668.1\|2991033_2991207_-	hypothetical protein	NA	NA	NA	NA
WP_043295226.1\|2991203_2992193_-	DUF1376 domain-containing protein	NA	NA	NA	NA
WP_043295228.1\|2992230_2992449_-	hypothetical protein	NA	NA	NA	NA
WP_043295230.1\|2992611_2993082_-	hypothetical protein	Q6JIG5	Burkholderia_virus	4.1e-63	77.1
WP_043295232.1\|2993081_2993939_-	DNA adenine methylase	A0A0K1LM14	Caulobacter_phage	2.8e-78	53.1
WP_043295234.1\|2993938_2994808_-	hypothetical protein	A9YWY3	Burkholderia_phage	9.7e-151	92.7
WP_038782739.1\|2994804_2995095_-	hypothetical protein	A9YWY2	Burkholderia_phage	6.9e-45	100.0
WP_043295236.1\|2995091_2995319_-	hypothetical protein	NA	NA	NA	NA
WP_038783824.1\|2995312_2995531_-	hypothetical protein	A9YWY0	Burkholderia_phage	2.6e-36	98.6
WP_038782735.1\|2995533_2995908_-	hypothetical protein	A9YWX9	Burkholderia_phage	3.4e-68	99.2
WP_069246083.1\|2996021_2996297_-	hypothetical protein	NA	NA	NA	NA
WP_080751011.1\|2996193_2996802_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_155295669.1\|2996968_2997322_+	hypothetical protein	NA	NA	NA	NA
WP_155295670.1\|2997308_2998277_+	hypothetical protein	NA	NA	NA	NA
WP_080750999.1\|2998390_2999110_+	KilA-N domain-containing protein	A0A141GEX9	Brucella_phage	2.2e-15	41.7
WP_043295243.1\|2999557_2999932_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_043295391.1\|2999965_3000388_+	hypothetical protein	NA	NA	NA	NA
WP_043295244.1\|3000564_3000882_+	hypothetical protein	NA	NA	NA	NA
WP_043295246.1\|3000881_3001064_+	hypothetical protein	NA	NA	NA	NA
WP_052122145.1\|3001388_3001826_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_043295248.1\|3001822_3002119_+	KTSC domain-containing protein	A9YWW2	Burkholderia_phage	2.4e-32	70.7
WP_043295250.1\|3002115_3002925_+	hypothetical protein	J7HXJ4	Pseudomonas_phage	7.5e-89	59.4
WP_080751000.1\|3002917_3003412_+	hypothetical protein	W6PUJ9	Citrobacter_phage	9.4e-18	41.1
WP_043295253.1\|3003432_3004632_+	hypothetical protein	J7HXB6	Pseudomonas_phage	1.7e-65	55.0
WP_043295255.1\|3004662_3005544_+	cell division protein FtsK	J7I0T4	Pseudomonas_phage	5.8e-34	32.9
WP_043295257.1\|3005540_3007307_+	AAA family ATPase	H2BD46	Pseudomonas_phage	3.8e-77	38.0
WP_043295259.1\|3007303_3007918_+	hypothetical protein	A9YX18	Burkholderia_phage	1.3e-21	100.0
WP_043295261.1\|3008013_3008376_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_043295263.1\|3008406_3008871_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_043295266.1\|3008885_3009242_+	four helix bundle protein	NA	NA	NA	NA
WP_043295268.1\|3009585_3010584_+	RNA-directed DNA polymerase	H7BVN7	unidentified_phage	3.2e-41	33.9
WP_080751012.1\|3010633_3011311_+	DNA cytosine methyltransferase	A0A0H5AU88	Pseudomonas_phage	1.5e-61	55.6
WP_043295270.1\|3012523_3012964_+	hypothetical protein	A0A2H4PD52	Mycobacterium_phage	6.2e-21	46.8
WP_155295671.1\|3012944_3013433_+	hypothetical protein	NA	NA	NA	NA
WP_043295274.1\|3013429_3013762_+	hypothetical protein	A9YWU9	Burkholderia_phage	1.7e-10	55.1
WP_043295276.1\|3013761_3013983_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_043295278.1\|3013979_3015011_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1P9F9	Acinetobacter_phage	3.8e-45	35.2
3015163:3015182	attR	NA	NA	NA	NA

DBSCAN-SWA_10

3469029 : 3479911

Agrobacterium_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009892610.1\|3469029_3471330_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	41.9
WP_009892611.1\|3471326_3471641_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	2.6e-13	44.6
WP_004196460.1\|3472171_3472375_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_009892614.1\|3474243_3475503_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	6.8e-12	63.0
WP_009892615.1\|3475767_3476346_+	pseudouridine synthase	NA	NA	NA	NA
WP_080511442.1\|3476606_3476822_+	hypothetical protein	NA	NA	NA	NA
WP_011401863.1\|3477017_3477533_+	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	1.5e-13	41.2
WP_009892620.1\|3477796_3479911_+	elongation factor G	E4ZFJ7	Streptococcus_phage	1.2e-56	26.8

DBSCAN-SWA_11

3570672 : 3647892

Burkholderia_virus(54.39%)

plate,transposase,integrase,protease,tail,head

attL 3634278:3634293|attR 3654072:3654087

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011401833.1\|3570672_3572160_-\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	2.0e-26	32.1
WP_009892756.1\|3572378_3573695_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	2.4e-20	29.6
WP_009892758.1\|3573698_3574361_-	response regulator	NA	NA	NA	NA
WP_080751013.1\|3574631_3576083_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA
WP_009892762.1\|3576393_3577305_+	sterol desaturase family protein	NA	NA	NA	NA
WP_009892763.1\|3577395_3578535_+	acylhydrolase	NA	NA	NA	NA
WP_009892764.1\|3578875_3579901_-	threonylcarbamoyl-AMP synthase	A0A291ATS8	Pandoravirus	5.7e-41	39.1
WP_009892765.1\|3579912_3581109_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_009892766.1\|3581187_3581706_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_009892767.1\|3581741_3582632_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	2.5e-53	38.1
WP_004190157.1\|3582819_3583884_-	fructose-bisphosphate aldolase class II	NA	NA	NA	NA
WP_043295309.1\|3584167_3585604_-	pyruvate kinase	NA	NA	NA	NA
WP_009903111.1\|3585933_3587127_-	phosphoglycerate kinase	NA	NA	NA	NA
WP_009892778.1\|3587403_3587727_-	AzlD domain-containing protein	NA	NA	NA	NA
WP_009892779.1\|3587723_3588485_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_009892780.1\|3588707_3589631_+	branched-chain amino acid transaminase	NA	NA	NA	NA
WP_004197553.1\|3589696_3589894_+	zinc-finger domain-containing protein	NA	NA	NA	NA
WP_011401829.1\|3590021_3591062_+	lipopolysaccharide heptosyltransferase II	NA	NA	NA	NA
WP_004189144.1\|3591193_3591640_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_009892784.1\|3591659_3592694_+	hydrolase	NA	NA	NA	NA
WP_009892785.1\|3592686_3593304_+	DUF2946 family protein	NA	NA	NA	NA
WP_080556710.1\|3593557_3595282_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_009892788.1\|3595414_3595909_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_009892790.1\|3596089_3596455_-	TonB family protein	NA	NA	NA	NA
WP_009908511.1\|3596695_3597166_-	DUF2501 domain-containing protein	NA	NA	NA	NA
WP_009908510.1\|3597801_3598905_+	acyltransferase	A9YX16	Burkholderia_phage	2.4e-85	46.7
WP_099975807.1\|3599041_3599746_-\|tail	phage tail protein	A9YX14	Burkholderia_phage	1.2e-90	78.5
WP_038798108.1\|3601056_3601638_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.2e-93	90.2
WP_009910798.1\|3601630_3602782_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	1.4e-197	93.5
WP_009910797.1\|3602778_3603132_-\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.0e-62	99.1
WP_009910796.1\|3603185_3603788_-\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	1.9e-100	97.0
WP_009910793.1\|3603784_3604993_-	hypothetical protein	A4JWL3	Burkholderia_virus	2.7e-215	98.8
WP_009910792.1\|3604980_3605190_-	membrane protein	Q6QIA3	Burkholderia_phage	3.1e-31	94.2
WP_025992381.1\|3605189_3606080_-\|tail	phage tail protein	Q6QIA4	Burkholderia_phage	9.7e-106	99.2
WP_009910789.1\|3606081_3608694_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	0.0e+00	96.4
WP_009910787.1\|3608723_3608966_+	hypothetical protein	A4JWK9	Burkholderia_virus	1.7e-33	95.0
WP_050791341.1\|3608968_3609172_-	hypothetical protein	Q6QIA7	Burkholderia_phage	3.7e-29	95.5
WP_025992380.1\|3609098_3609428_-\|tail	phage tail assembly protein	A4JWK7	Burkholderia_virus	3.8e-47	93.6
WP_009910782.1\|3609549_3610074_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	7.2e-93	97.1
WP_009910781.1\|3610076_3611510_-\|tail	tail protein	A4JWK5	Burkholderia_virus	5.7e-265	97.1
WP_009910780.1\|3611513_3611759_-	hypothetical protein	Q6QIB1	Burkholderia_phage	5.3e-38	98.8
WP_009910779.1\|3611755_3612220_-	hypothetical protein	A4JWK3	Burkholderia_virus	5.3e-79	96.8
WP_009910777.1\|3612219_3612672_-	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	6.1e-80	99.3
WP_009910776.1\|3612673_3613006_-	DUF2190 family protein	A4JWK1	Burkholderia_virus	1.5e-51	100.0
WP_038708155.1\|3613080_3614004_-	hypothetical protein	A4JWK0	Burkholderia_virus	2.2e-169	98.7
WP_009910773.1\|3614049_3615165_-	peptidase	A4JWJ9	Burkholderia_virus	5.2e-197	91.9
WP_009910771.1\|3615379_3615907_-	phage virion morphogenesis protein	A4JWJ7	Burkholderia_virus	2.8e-92	100.0
WP_009910770.1\|3615903_3616740_-\|head	phage head morphogenesis protein	A4JWJ6	Burkholderia_virus	2.7e-166	100.0
WP_009910769.1\|3616732_3618208_-	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	2.1e-283	99.6
WP_009910768.1\|3618204_3619707_-	hypothetical protein	A4JWJ4	Burkholderia_virus	1.8e-293	100.0
WP_009910765.1\|3619703_3620249_-	DUF3486 family protein	A4JWJ3	Burkholderia_virus	3.0e-89	100.0
WP_006485389.1\|3620250_3620583_-	hypothetical protein	Q6QIC3	Burkholderia_phage	8.7e-60	100.0
WP_025992379.1\|3620579_3620918_-	hypothetical protein	A4JWP6	Burkholderia_virus	1.4e-52	99.1
WP_038708154.1\|3620914_3621514_-	hypothetical protein	A4JWP5	Burkholderia_virus	4.1e-92	90.5
WP_009910760.1\|3621510_3622122_-	transglycosylase SLT domain-containing protein	Q6QIC7	Burkholderia_phage	4.5e-110	97.5
WP_006485400.1\|3622124_3622472_-	membrane protein	Q6QIC8	Burkholderia_phage	8.0e-56	100.0
WP_009910759.1\|3622538_3622763_-	hypothetical protein	A4JWP2	Burkholderia_virus	1.9e-34	100.0
WP_009910758.1\|3622830_3623367_-	hypothetical protein	A4JWP1	Burkholderia_virus	3.7e-92	98.3
WP_009910756.1\|3623347_3623536_-	hypothetical protein	A4JWP0	Burkholderia_virus	5.0e-28	100.0
WP_009910755.1\|3623609_3624389_-	hypothetical protein	A4JWN9	Burkholderia_virus	5.3e-140	100.0
WP_099975851.1\|3624385_3624826_-	transcriptional regulator	A4JWN8	Burkholderia_virus	4.7e-69	99.3
WP_009910751.1\|3624937_3625120_+	DNA-binding protein	A4JWN7	Burkholderia_virus	4.8e-28	100.0
WP_025992377.1\|3625165_3625402_-	hypothetical protein	Q6QID5	Burkholderia_phage	6.2e-36	98.7
WP_025992376.1\|3625522_3626002_+	hypothetical protein	A4JWN5	Burkholderia_virus	1.7e-88	100.0
WP_009910747.1\|3625998_3626304_+	helix-turn-helix domain-containing protein	A4JWN4	Burkholderia_virus	4.9e-49	100.0
WP_009910745.1\|3626316_3627234_+	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	2.3e-163	100.0
WP_025992375.1\|3627251_3629051_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JWN2	Burkholderia_virus	0.0e+00	99.7
WP_009910741.1\|3629050_3630262_+	AAA family ATPase	A4JWN1	Burkholderia_virus	1.4e-219	98.8
WP_009910739.1\|3630263_3630593_+	hypothetical protein	Q6QIE2	Burkholderia_phage	3.6e-50	89.8
WP_009910738.1\|3630589_3630799_+	hypothetical protein	NA	NA	NA	NA
WP_009910737.1\|3630922_3631540_+	DUF3164 family protein	A4JWM8	Burkholderia_virus	6.3e-112	99.5
WP_009910736.1\|3631603_3631876_+	HU family DNA-binding protein	A4JWM7	Burkholderia_virus	8.2e-40	96.7
WP_025992374.1\|3631969_3632311_+	DUF2528 family protein	Q6QIE6	Burkholderia_phage	4.2e-57	95.6
WP_025992373.1\|3632294_3632735_+	regulatory protein GemA	Q6QIE7	Burkholderia_phage	3.1e-73	95.2
WP_006485401.1\|3632731_3633103_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	8.5e-64	100.0
WP_009892793.1\|3633569_3635357_-	polymerase	NA	NA	NA	NA
3634278:3634293	attL	NA	NA	NA	NA
WP_043037212.1\|3635597_3636116_-	pilin	NA	NA	NA	NA
WP_009892795.1\|3636335_3637049_-	TerC family protein	A0A2R2YAT9	Pseudomonas_phage	8.2e-39	45.2
WP_009892797.1\|3637200_3638082_-	succinate--CoA ligase subunit alpha	NA	NA	NA	NA
WP_009892798.1\|3638228_3639395_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_009910729.1\|3639474_3640086_-	DUF2889 domain-containing protein	NA	NA	NA	NA
WP_025992372.1\|3640349_3641327_-	recombination regulator RecX	NA	NA	NA	NA
WP_009892802.1\|3641326_3642397_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	2.5e-116	65.5
WP_025369554.1\|3642602_3643346_+	response regulator transcription factor	NA	NA	NA	NA
WP_009892804.1\|3643375_3644929_+	sensor histidine kinase	W8CYF6	Bacillus_phage	3.6e-15	27.2
WP_009892806.1\|3645151_3646810_+	MHS family MFS transporter	NA	NA	NA	NA
WP_099975840.1\|3647232_3647892_-\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	2.1e-57	55.5
3654072:3654087	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP004386

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP004386_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP004386_1

612228-612319

Orphan

Consensus_repeat	Method
GCGACGCGCGCAAGGCCGAAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP004386_1

>merge|NZ_CP004386|1|612228-612319|CRISPRCasFinder
GCGACGCGCGCAAGGCCGAAGCGGGCGCGAAGCGCACGGCCGACGACGACAGGCACCGCAGGCACGACGGCGACGCGCGCAAGGCGGAAGCG

>NZ_CP004386|1|1|612228-612319|CRISPRCasFinder
GCGACGCGCGCAAGGCCGAAGCG	GGCGCGAAGCGCACGGCCGACGACGACAGGCACCGCAGGCACGACG
GCGACGCGCGCAAGGCGGAAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP004386.1\|WP_009896605.1\|600663_601599_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP004386.1\|WP_009907540.1\|616819_618127_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP004386.1\|WP_009896604.1\|601938_603969_+\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|376718
NZ_CP004386.1\|WP_025370244.1\|614581_615844_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP004386.1\|WP_009896586.1\|623726_623999_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004386.1\|WP_011401139.1\|624303_624516_+\|DUF3079-domain-containing-protein	unknown	unknown	gnl\|CDD\|337966
NZ_CP004386.1\|WP_009899924.1\|616044_616770_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP004386.1\|WP_009896584.1\|624827_625337_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP004386.1\|WP_009907539.1\|618178_619069_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|226145
NZ_CP004386.1\|WP_009896595.1\|610883_611393_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
NZ_CP004386.1\|WP_009896601.1\|606312_607761_+\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|293737
NZ_CP004386.1\|WP_009896593.1\|613605_614226_-\|HAD-hydrolase-like-protein	unknown	unknown	gnl\|CDD\|319799
NZ_CP004386.1\|WP_009907538.1\|619287_620766_+\|ser/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|277318
NZ_CP004386.1\|WP_009896600.1\|607938_608580_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004386.1\|WP_009907543.1\|609674_610691_-\|1-aminocyclopropane-1-carboxylate-deaminase	unknown	unknown	gnl\|CDD\|183494
NZ_CP004386.1\|WP_127446362.1\|605972_606254_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004386.1\|WP_009907537.1\|620762_622394_+\|cytochrome-c-methylamine-utilization-protein	unknown	unknown	gnl\|CDD\|224771
NZ_CP004386.1\|WP_009907544.1\|604242_605433_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP004386.1\|WP_009896599.1\|608667_609021_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004386.1\|WP_009896602.1\|605606_605948_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP004386.1\|WP_009907540.1\|616819_618127_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.02595e-132
NZ_CP004386.1\|WP_009896604.1\|601938_603969_+\|BCCT-family-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	0
NZ_CP004386.1\|WP_025370244.1\|614581_615844_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.27954e-73
NZ_CP004386.1\|WP_011401139.1\|624303_624516_+\|DUF3079-domain-containing-protein	gnl\|CDD\|337966	pfam11278, DUF3079, Protein of unknown function (DUF3079). This family of proteins with unknown function appears to be restricted to Proteobacteria.	1.88329e-34
NZ_CP004386.1\|WP_009899924.1\|616044_616770_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	3.20406e-58
NZ_CP004386.1\|WP_009896584.1\|624827_625337_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	2.02403e-15
NZ_CP004386.1\|WP_009907539.1\|618178_619069_+\|amidohydrolase-family-protein	gnl\|CDD\|226145	COG3618, COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	1.26079e-68
NZ_CP004386.1\|WP_009896595.1\|610883_611393_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	6.18054e-47
NZ_CP004386.1\|WP_009896601.1\|606312_607761_+\|alkaline-phosphatase-family-protein	gnl\|CDD\|293737	cd16013, AcpA, acid phosphatase A. Acid phosphatase A catalyzes the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at low pH. AcpA hydrolyzes a variety of substrates, including p-nitrophenylphosphate (pNPP), p-nitrophenylphosphorylcholine (pNPPC), peptides containing phosphotyrosine, inositol phosphates, AMP, ATP, fructose 1,6-bisphosphate, glucose and fructose 6-phosphates, NADP, and ribose 5-phosphate. AcpA is distinct from histidine ACPs and purple ACPs, as well as class A, B, and C bacterial nonspecific ACPs.	6.75935e-99
NZ_CP004386.1\|WP_009896593.1\|613605_614226_-\|HAD-hydrolase-like-protein	gnl\|CDD\|319799	cd04303, HAD_PGPase, phosphoglycolate phosphatase, similar to Synechococcus elongates phosphoglycolate phosphatase PGP/CbbZ. Phosphoglycolate phosphatase catalyzes the dephosphorylation of phosphoglycolate; its activity requires divalent cations, especially Mg++. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.36094e-67
NZ_CP004386.1\|WP_009907538.1\|619287_620766_+\|ser/threonine-protein-phosphatase	gnl\|CDD\|277318	cd00839, MPP_PAPs, purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.71205e-09
NZ_CP004386.1\|WP_009907543.1\|609674_610691_-\|1-aminocyclopropane-1-carboxylate-deaminase	gnl\|CDD\|183494	PRK12390, PRK12390, 1-aminocyclopropane-1-carboxylate deaminase; Provisional.	0
NZ_CP004386.1\|WP_009896605.1\|600663_601599_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.09348e-55
NZ_CP004386.1\|WP_009907537.1\|620762_622394_+\|cytochrome-c-methylamine-utilization-protein	gnl\|CDD\|224771	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism].	3.50892e-82
NZ_CP004386.1\|WP_009907544.1\|604242_605433_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.37834e-55

>NZ_CP004386.1|WP_009896595.1|610883_611393_+|winged-helix-turn-helix-transcriptional-regulator
MCATKKSAPKAAAQPAGADIDRVDRAILRMLQRDASISNVALAAKVNLSAPACLRRVERLKEMGLIRGIVALLEPKALNAGMLVMIGVVLDRSTPDSFGAFEQAAQKVSGCMECHVVTGEFDYIMLIRTRDSDTFNRLHAEQLLYLPGVRQIRTFVVLKEILSTTSFPI
>NZ_CP004386.1|WP_009907543.1|609674_610691_-|1-aminocyclopropane-1-carboxylate-deaminase
MNLQKFPRYPLTFGPTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLVPDGFDIGFRKSWEDALADVRARGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGIDASAKPAQTREQILRIARNTADRVELGRDIASGDVVLDERFGGPEYGLPNEGTLEAIRLCAKLEGVLTDPVYEGKSMHGMIEKVRLGEFPAGSKVLYAHLGGVPALNAYSFLFRDG
>NZ_CP004386.1|WP_009896599.1|608667_609021_-|hypothetical-protein
MGFVGGERRRARIAESNEIDGATLITKVASEPLAALGGARSEATPPLTLYGAYRQGFADYLAGRPNPYRIGSRLAGIWHEGHAEAASNDALDFTARARTCGGARTAANPVAFFRRRR
>NZ_CP004386.1|WP_009896600.1|607938_608580_+|hypothetical-protein
MKIRSGLVAELTVNLLLPWAAYRAAAPHWGETGGLIASAVPPLAWSVIELARFRRIDALSAVVLFGIVLSIAAALAGGSPRMLLMRESLASGAIGVAFLGSLALRKPLVFHLARATIAREAHDGAARIDALWAERPAFVSAMRLMTLVWGSGLVAENLLRAWMVWNWPVERVLVVAPFVGYGIYGALMLWTLWYRKVMRAHALAGLPRGGALG
>NZ_CP004386.1|WP_009896601.1|606312_607761_+|alkaline-phosphatase-family-protein
MGRRARRPATPPAHKKEKIVAKILENVEHIVVVMFENRSFDTMLGWLYPPGTQPAHVLPARGSPQFDGLKPDMSNPSRAGKTIAVTREATNNVIPDPQETFVNVTSQILGPGGAGNPWPPMQGFVVNYETTRTSDPGHVMQCHSVAQLPTLTALARAYAVSDAWFASVPSQTWPNRAFAHAGTSNGHVNNGAIPDPLEWDVPTIFDVLSSIGASWAVYSDTAVTPSLTHTMFPSLWNDKYADNFERFPDFVAACKNDALPRYAFVEPSFLFEPNDQHPPHDVLAGDKFLHDIWTAISTSPGWPRTLLVVTYDEHGGCFDHVLPPANATPPDAASNPGDETFEFDRFGVRVPAVVVSPYIEAGTVFRSPTNVPYDHTSILATLRDWLAIAPDKMLKSARIANAPTLAQLFTRSVPRGDLPAIAAPSADFVQPPPSAPLNDLQKSLVTGTSRRDGNDPAASVAPIATRQHALDFFTRRATAKPT
>NZ_CP004386.1|WP_127446362.1|605972_606254_+|hypothetical-protein
MTTEPARASGGARSFTHRADRAAIRRHRQRHLRHQRGYRRNESVFMGGGANSAPGDEFAAMIETAPARAHPPARRVAGTPAAPPCFSRNIGYT
>NZ_CP004386.1|WP_009896602.1|605606_605948_+|hypothetical-protein
MIAPATPAALAAGATTFAEWAALGTLALLYLFGLGWSLRGALARSRGRAYWLACAALIAGGTACALLAKPSAPNSGEMPPGFGLGVLVVMLGIAGTTAGCAWQAIARLRHGQR
>NZ_CP004386.1|WP_009907544.1|604242_605433_-|serine-hydrolase
MNLESVTPATAAAAATDHAALAGRLDRVFATALAERRVVGAVALVARGGELVYRRAHGFAERETQRPMREDTLFRLSSITKPIVTVAVLRLVAAGRMALDAPITRWLPEFAPALPDGRAPALTVHQLLTHTAGLSYWLLEAPGSAYHTLGISDGIDLVDFDLAENLRRIAAAPLAFEPGSAWRYSLALDVLGAAIERETGLALPDAVAQLVTTPLGLRDTGFVAADPARFAAAYANAAPQPVRITDNLDVPLPEGHGVAVRFAPSRVFDATAFASGGAGMYGSADDVLRVLETIRTGGDGFLPAALAAAMRTDHTGPAAETRGPGWGFGYGGAVLSDPARAQSPQSAGTLQWGGVYGHSWFVDAARGLTVLLMTNTAYEGMSGPLTVEVRDAVYAV
>NZ_CP004386.1|WP_009896604.1|601938_603969_+|BCCT-family-transporter
MPSSRSAPRTTLKPQVVVPSLAVIGALLAVCALLPNEAGALFGAGQQWIVERFDWFYVLAITTFLIFIVLIAASRFGNIKLGPDDAEPEFSFVSWTAMLFAAGMGIGLMYFGVGEPIQHYLKPPTALGGTPAAAREAMLMSFFHWGLHAWATYGVMGLVLAYFGFRYNLPLTLRSGLYPVLREGVNGWIGHTVDAFALVGTVAGIAVTLGYGVLQLSAGLHTIAGWQTDSDAFRIGLVAVVVALAGLSAASGLDKGVRRLSELNLMLAFALLAFVVVAGPTSFLLRAFGDNVGEYLSKLVSLSFRTYAYEAPNDKGWFGGWTLLYWAWWVSWSPFVGMFIARISRGRTIREFVIGVLLVPTAFNLVWMTAFGNSAIWLDTHAAAGALAQTATNVDALLFRFFDYLPLTQLLSVAAIVLIAVFFVTSADSGAFVIDAIATRGAPHSPVWQRLFWAAVLGVTASVLLVAGGLKALQALTLVAALPVALVMLALCYGLWRGLKADHAHYSQEMAPATSFWTGQHWRQRLSQILRHTTGADARRFIAQTVEPALRKVAEELKAGGVDAHVARDDDDAVRLTVPAPAQRDFVYGARVSRKSAPAFRIREAAEPEPQREHVCEVLTFFADGRLGYDIEYLRGDEIIADVLRQYERYVSLASDTRTHLLNRAPEHAGPDGLTQ
>NZ_CP004386.1|WP_009896605.1|600663_601599_-|MurR/RpiR-family-transcriptional-regulator
MSDSPDSPPDAEPSIAARIAAVLPSLTPIHRRMGEYVLANPFRAATMRIDELANAVDASIATANRFARALGFDGYPALRAALVRGFEATLAPVERLRSAQEHEAGARGGELIDASFEQALANLERTRARLDRANVEAAVDSLLAARRIFIVGMGASAFLAGLMEHGLSVYRDNVQSLALLGGPTDAARRLFSARGDDLVVAIAFPRYVHDTIELTRRAAERGAPVLAITDGPDSPVAPFAARALFVHAERRLAATSEAAVLALVEALIDALAHRSQRSARAAAEVTEFMLPWLEARGACAAPPRRSRKTDR
>NZ_CP004386.1|WP_009896593.1|613605_614226_-|HAD-hydrolase-like-protein
MAYKLIAFDFDGTLADSLACFLLALSESARQHGFRAIDGALLPQVRGMSAHEIVKLLGVPPWKVPLIAADMRRRMHARASDVRLFAGIDATLRALAQRGTRIAIATSNSEAVVRAIAGPATCAHIRHFSCGISLFGKARRLRALAHASGFACADVLYVGDEVRDAQAADRAGIAFRGVAWGYTAPDALQAHCRMPLIERPEELLAL
>NZ_CP004386.1|WP_025370244.1|614581_615844_-|MFS-transporter
MTKIARRLMPLLVIMFLIAFIDRQNVGFAKLQMVHALGMTETSYGLGASLFFIGYLLFEVPSTLALHRFGARLWLARIMMTWGVITVLLGFTHSTSVFYVFRFLLGVAEAGFYPGVIYYLTLWFPQSHRTRVLGLFTLGSALANMLGSLAGGLLLSLDGRLGLAGWQWVFVATGLPAVAVAFVALRYLPESVERATFLADDEKRVVLAALKREASPEAVSESPWRALVDPRVLMFALAYMLMSTSLYGVTYWLPTLLKSSGVPASLNGLLNMIPWAIAALLLLWLPARLKRERLVLKAMAIVAGVGVAGFALSLALPGLPLCFAALVLGGACIPLLYPCFWSLPPRFFSGARAAASIAAINSIGNLGGFFAQNLMPYVGKAAGSTSAPMLVPVVCLAALGVGMLAAASVAGRRRAAGMAA
>NZ_CP004386.1|WP_009899924.1|616044_616770_+|GntR-family-transcriptional-regulator
MHATDDRLPRYQRLRDELAALIAARHWRPGEAIPTEQALAKRYDVAIGTVRKAVDLLVADGMLERFQGRGTFVRRASFDSSLFRFFRFQSKHGERRIPESRILRREVVEATSAVAAALQIPARAPVIEMTRVRLIDGAPMLAEEIWLPYDRFAAFSRLELDSIGDLLYPVYEAHCNQIVASATETLTVEAIGPVHARLLRIEPGTPAVVIERLAYGYDRRPLEWRRSRGPASEFIYQAEIR
>NZ_CP004386.1|WP_009907540.1|616819_618127_+|MFS-transporter
MFEWFATVSLRERRTFWACFGGWALDALDMQMFSLVIPAIVAEWSLSRTQAGFVGGATLVASAIGGWVAGMLSDRFGRVRTLQWTIACFAVGTFACAFATSYPQFVVLKALQGAGFGGEWAAGAVLMAETIRAEHRGKAMGAVQSAWALGWAAAVLLYALAFSLMPAALAWRAMFAIGLLPALLIVYVRRGIVEPSVSASSPSNTPAAARASVPLVGIFSRDTRRMTLIGALLGVGAHGGYYALMTWLPTYLKVERHLSVLGTGGYLAVIIVAFFCGCIASAQLLDRIGRRGTILAFAACCIATVIAYLFLPLGNAAMLVLGFPLGFFAAGIPASMGALFNELYPRGTRGTGVGFCYNFGRVASAGFPVLVGHMSADMPLGTAIGIDAAIAYSIVVVAVLLLPETRARALDDLAGAHATADARADRIGAPGARPR
>NZ_CP004386.1|WP_009907539.1|618178_619069_+|amidohydrolase-family-protein
MSGQEWSACAHAAAMRRAASDITAIDAHAHVFETGLPLAGRRRYAPDYDAPLDAYLAQLDAHRVSHGVLVQPSFLGSDCRYLLRALAQQPRRLRGVAVIDAGCEPHVLDTLDRAGVVGIRLNLIGMPDPALDGPAWRATLERIAALRWHVELHAQAQRLGRLIAPLLAHRVNVVVDHFGRPNPACGIADAGFRDLLRTAATRRVWVKVSGVYRNWPLAPGEANARAQEAFDALAAEFGAERLVWGSDWPHTQFERTETFGRAFALARQWMRDDAMRRAIFVETPARLFRFGELHGA
>NZ_CP004386.1|WP_009907538.1|619287_620766_+|ser/threonine-protein-phosphatase
MPRPILRRAAALLPTLASAALLQACTSSIDNQPDAASASANIQAAWVEIGDANQAIARVITSYAPPAAAPGEAAPAVCPQLNADGKIARMTLRAAAGTAAQRPTASDPADSKPSGFPVSVCEATVPANAKDVTVAGRALPLPKAEPQRVAIIADTGCRMKKADNAFQACSDATVWPFATIAASVAKLNPDLVLHVGDYHYRENACPPDIAGCKNSPWGYGWDAWRADLFEPAAPLLAKAPWVVVRGNHEECARAGQGWFRFLDPRPYSDARSCNDPANDGNANYSEPYAVPLGTGSQVIVFDTAKVGRAALKTTDVQFQIYQKQFQTVAALANKPGMSTTIFTNHHPILAFAPIPGSTPAPGNLALQSVMSSLYAQAYYPPGVQIALHGHVHDFQAINFASGHPATIVSGNGGDNLDVALPDPFPANLTPAPGVVIDKLSHNNSFGFLIMERRAAPARGWTFKAYTAAGKLLASCDQAGTTLTCDKTGFVAP
>NZ_CP004386.1|WP_009907537.1|620762_622394_+|cytochrome-c-methylamine-utilization-protein
MTGRRRSSAARRAVPAAALTARASVTAFALGPAALGTTRTRRTVLTLSTIVRAACGALAACASAIALASGPAAPDATHSTHAARPASAASSTSPMNPTSTPGASGPAHAKAALDAARAKAAPPSPPTTVLLPGAPPERVVDTIGRGTPQVASKVDPTAAVFRPDPTLAALGKRVFFDPALSEPRGMSCASCHDPGRAFAPTLSPAALAGPRVPQGSRPGHFSRRNAPSLLYVRYVPRRHFYQDDDALAPAPFGGLFSDGRADTLAEQLRGPLFDPDEMNNASAAALMRKIGRTGLGAALAGRFGPSVRRDPERMVRVLGEAMQAYLQSDEMAPFSSRYDAYVTKRAPLTPQEMRGLALFRNPDKGNCMSCHTLSDTASRPERSLFTDFGYDAIAVPRNRALPANRDPRHFDNGLCDTAAKLRWPEPTQWCAYLRTPGLRNVAIKESFMHNGVFDTLRDAVAFYNTRSTDPARWYHGRDTFDDVPRAYRGNVNVNSTPMNRRPGTPPAMTDADVDDLVAFLRTLTDARYVGLMPAAPDGKAARP
>NZ_CP004386.1|WP_009896586.1|623726_623999_+|hypothetical-protein
MEHLVRIVNDTDRQILAWLRNQVGDERVERAAQHMGRVRKPYLSAVCRYLGVWPPISLRYQTRRAEVDHAVGDRYLTLIRQHLATHAASR
>NZ_CP004386.1|WP_011401139.1|624303_624516_+|DUF3079-domain-containing-protein
MAKKFPLHPKHPERNCWGCDRYCSVDALSCGNGSDRTQHPVELLGDDWYEWEQENEAAQKQMQQTQAAAR
>NZ_CP004386.1|WP_009896584.1|624827_625337_-|GNAT-family-N-acetyltransferase
MISIRLLEPADAAAFSALRLVAINTSPTAIWPTRAEEAGRSRMEVEARLRASGTQAVFGALTVDGELIGVAGVRREALVQIGHKATLWGVFVAPAHRGSGLARRLVDAALTHASRDWGVAQVNLCVNTGNEPAKALYASLGFETFGVERRAMRIGDRFYDEQHMVRVLR

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Crispr_ID: NZ_CP004386_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP004386_2

1852360-1852594

Orphan

Consensus_repeat	Method
AGGTGAGGNTTTTCGGGA	CRT

4 spacers

The CRISPR arrays of NZ_CP004386_2

>merge|NZ_CP004386|2|1852360-1852594|CRT
ATGTGAGCGTTTCCGGGAAGGAACGCCCGCAAAAGCCCGTCCGACAGGGTTTCGCCGCTCGAAATAGCCTAAAGGTGAGGTTTTTCGGGAGACCTTCTTCAGTGCCGGAACGAGGTTCTCACATAAGGTGAGGGAATTCGGGAGCATGACCGGTGCTCACCGATCGCGCTTGAGGTGAGGTTTTTCGGGAGGCTTGTGTGCAGCGGAAATTCACGAAAGGTGAGGTTTTTCGGGG

>NZ_CP004386|2|1|1852360-1852594|CRT
ATGTGAGCGTTTCCGGGA	AGGAACGCCCGCAAAAGCCCGTCCGACAGGGTTTCGCCGCTCGAAATAGCCTAA
AGGTGAGGTTTTTCGGGA	GACCTTCTTCAGTGCCGGAACGAGGTTCTCACATA
AGGTGAGGGAATTCGGGA	GCATGACCGGTGCTCACCGATCGCGCTTG
AGGTGAGGTTTTTCGGGA	GGCTTGTGTGCAGCGGAAATTCACGAA
AGGTGAGGTTTTTCGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP004386.1\|WP_009894473.1\|1864115_1864739_+\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|381738
NZ_CP004386.1\|WP_009894495.1\|1846727_1847927_-\|glycine-C-acetyltransferase	unknown	unknown	gnl\|CDD\|235893
NZ_CP004386.1\|WP_009894503.1\|1844367_1844799_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004386.1\|WP_009894485.1\|1850464_1851652_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|378704
NZ_CP004386.1\|WP_009894504.1\|1843723_1844371_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP004386.1\|WP_009894474.1\|1863754_1864123_+\|response-regulator	unknown	unknown	gnl\|CDD\|381124
NZ_CP004386.1\|WP_011400752.1\|1844912_1845461_+\|ATPase	unknown	unknown	gnl\|CDD\|235494
NZ_CP004386.1\|WP_009894478.1\|1858495_1858852_+\|arsenate-reductase-(glutaredoxin)	unknown	unknown	gnl\|CDD\|239332
NZ_CP004386.1\|WP_009908241.1\|1859324_1859930_-\|RNA-polymerase-factor-sigma-70	unknown	unknown	gnl\|CDD\|183584
NZ_CP004386.1\|WP_009907044.1\|1845349_1845559_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235494
NZ_CP004386.1\|WP_009901851.1\|1860294_1860852_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223508
NZ_CP004386.1\|WP_009894481.1\|1856156_1857224_-\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|272946
NZ_CP004386.1\|WP_009894479.1\|1857248_1857911_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|349760
NZ_CP004386.1\|WP_009894477.1\|1859146_1859344_-\|zf-HC2-domain-containing-protein	unknown	unknown	gnl\|CDD\|379219
NZ_CP004386.1\|WP_009894498.1\|1845683_1846715_-\|L-threonine-3-dehydrogenase	unknown	unknown	gnl\|CDD\|180054
NZ_CP004386.1\|WP_009908240.1\|1860981_1863249_-\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_CP004386.1\|WP_009894491.1\|1848782_1849163_+\|DUF2471-family-protein	unknown	unknown	gnl\|CDD\|371166
NZ_CP004386.1\|WP_011401612.1\|1854608_1856063_+\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NZ_CP004386.1\|WP_009894493.1\|1848094_1848703_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380339
NZ_CP004386.1\|WP_009894488.1\|1849328_1850372_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|334163

Protein	Function_ID	Function_description	E-value
NZ_CP004386.1\|WP_009894473.1\|1864115_1864739_+\|chemotaxis-protein	gnl\|CDD\|381738	cd17910, CheC_ClassII, chemotaxis protein CheC, Class II. This family contains class II CheC proteins found in proteobacteria, which diverge from class I CheCs in sequence conservation and lack critical well-conserved residues for CheD binding. These proteins are likely to be dedicated phosphatases. The class II cheC genes are not found in chemotaxis operons, but in operons containing more archetypical two-component signaling components, non-signaling operons, or as orphans. Thus, class II CheCs appear to be involved in non-chemotactic two component systems. Class II CheCs lack the first of the two phosphatase active sites of class I CheCs, and retain the second active site of class I CheCs.	2.27047e-44
NZ_CP004386.1\|WP_009894495.1\|1846727_1847927_-\|glycine-C-acetyltransferase	gnl\|CDD\|235893	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional.	0
NZ_CP004386.1\|WP_009894485.1\|1850464_1851652_-\|DNA-binding-protein	gnl\|CDD\|378704	pfam11740, KfrA_N, Plasmid replication region DNA-binding N-term. The broad host-range plasmid RK2 is able to replicate in and be inherited in a stable manner in diverse Gram-negative bacterial species. It encodes a number of co-ordinately regulated operons including a central control korF1 operon that represses the kfrA operon. The KfrA polypeptide is a site-specific DNA-binding protein whose operator overlaps the kfrA promoter. The N-terminus, containing an helix-turn-helix motif, is essential for function. Downstream from this family is an extended coiled-coil domain containing a heptad repeat segment which is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning.	1.29531e-16
NZ_CP004386.1\|WP_009894504.1\|1843723_1844371_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.77878e-13
NZ_CP004386.1\|WP_009894474.1\|1863754_1864123_+\|response-regulator	gnl\|CDD\|381124	cd17593, REC_CheC-like, phosphoacceptor receiver (REC) domain of uncharacterized response regulators containing a CheC domain. This subfamily is composed of uncharacterized proteins containing an N-terminal REC domain and a C-terminal CheC domain that may function as the output/effector domain of a response regulator. CheC is a CheY-P phosphatase, affecting the level of phosphorylated CheY which controls the sense of flagella rotation and determine swimming behavior of chemotactic bacteria. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	4.19605e-57
NZ_CP004386.1\|WP_011400752.1\|1844912_1845461_+\|ATPase	gnl\|CDD\|235494	PRK05482, PRK05482, potassium-transporting ATPase subunit A; Provisional.	2.02813e-42
NZ_CP004386.1\|WP_009894478.1\|1858495_1858852_+\|arsenate-reductase-(glutaredoxin)	gnl\|CDD\|239332	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.	6.67847e-57
NZ_CP004386.1\|WP_009908241.1\|1859324_1859930_-\|RNA-polymerase-factor-sigma-70	gnl\|CDD\|183584	PRK12545, PRK12545, RNA polymerase factor sigma-70.	4.78402e-134
NZ_CP004386.1\|WP_009907044.1\|1845349_1845559_+\|hypothetical-protein	gnl\|CDD\|235494	PRK05482, PRK05482, potassium-transporting ATPase subunit A; Provisional.	7.39527e-05
NZ_CP004386.1\|WP_009901851.1\|1860294_1860852_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|223508	COG0431, COG0431, Predicted flavoprotein [General function prediction only].	1.80599e-47
NZ_CP004386.1\|WP_009894481.1\|1856156_1857224_-\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|272946	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein. This model represents the most well-conserved core of a set of chromosomal and plasmid partition proteins related to ParB, including Spo0J, RepB, and SopB. Spo0J has been shown to bind a specific DNA sequence that, when introduced into a plasmid, can serve as partition site. Study of RepB, which has nicking-closing activity, suggests that it forms a transient protein-DNA covalent intermediate during the strand transfer reaction.	1.65295e-19
NZ_CP004386.1\|WP_009894479.1\|1857248_1857911_-\|AAA-family-ATPase	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	1.39855e-35
NZ_CP004386.1\|WP_009894477.1\|1859146_1859344_-\|zf-HC2-domain-containing-protein	gnl\|CDD\|379219	pfam13490, zf-HC2, Putative zinc-finger. This is a putative zinc-finger found in some anti-sigma factor proteins.	2.44614e-06
NZ_CP004386.1\|WP_009894498.1\|1845683_1846715_-\|L-threonine-3-dehydrogenase	gnl\|CDD\|180054	PRK05396, tdh, L-threonine 3-dehydrogenase; Validated.	0
NZ_CP004386.1\|WP_009908240.1\|1860981_1863249_-\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	2.11977e-87
NZ_CP004386.1\|WP_009894491.1\|1848782_1849163_+\|DUF2471-family-protein	gnl\|CDD\|371166	pfam10616, DUF2471, Protein of unknown function (DUF2471). The function of this family is unknown. Members all come from Burkholderia spp. BDAG_04162 is annotated as Serine/threonine-protein kinase, but this could not be confirmed.	3.36055e-28
NZ_CP004386.1\|WP_011401612.1\|1854608_1856063_+\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	1.59011e-18
NZ_CP004386.1\|WP_009894493.1\|1848094_1848703_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	5.11757e-18
NZ_CP004386.1\|WP_009894488.1\|1849328_1850372_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|334163	pfam00589, Phage_integrase, Phage integrase family. Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase are Arg-173, His-289, Arg-292 and Tyr-324.	2.08052e-12

>NZ_CP004386.1|WP_009894485.1|1850464_1851652_-|DNA-binding-protein
MTLDEIRQSIREELDALRTAGARRQDLSLHACKRLFFDLGVRPSAANVRDLTQTGSASDIPKDIDHFWERIRAASKVRLEGAALPKPLEEKAGALLGALYEEALKQARESLDDERQQARDAVAAAEQKYRDVLIRQEALEAALARSDARAEQLQNRLTDAEVQLASAATQGLAHQDSLQGLIRRMENENTLLNQRLETEQSHNAALRERIDALNAELRENTEHYAQQIKDAIAEAERRVKPMLVELDSLRSMASTYQQGLRDVNRKEFDFLQQLSAAKARADRLDAQLREQGDELTAAANEVQVLRASQGMTPEIAALIRRLADAGNLDAAAFDAIGTSLDQHVSLPGRCPKCGDGEPELSHGADGYELLCPECEHTSGARPSRFAAVACFTRST
>NZ_CP004386.1|WP_009894488.1|1849328_1850372_+|tyrosine-type-recombinase/integrase
MSPPILTSPLSQPDIPSDLFDRDTSDWLNHPDTAFDAWLAAQEFRRSSADVYRAQWGAFLGWLAKRQKNLATVDTETIALFVGELPIKKTQRVRYLRLIERVLDHVRKNEFGSTNPARFIAQDGEATWRSARDNEPTSFLAPAERAALLAYLFSPLPAAGAALWKERRDRALIAAFLGGGLKTGEARALTISCVKLGSTVLTIPAAQPEFTRETHLASFAIALFGAWLAERQRCGIPGELVFPASQSGRPMHKATMLRAVDAIVDAADIAQSRTARASPQTLRNTFAAELFENGVEPEKVGQWLGFAQPISSNRLHRAWKNWRESLVSALPDAESLTDEALAASSQA
>NZ_CP004386.1|WP_009894491.1|1848782_1849163_+|DUF2471-family-protein
MTEQDLAALSFKAAAHDMETIVRHIAERYIRQGVPLTWRLLHAVEAEALADLGFASRHDSMVRCLFDRPAELRFPETDDLVDFGQSNALPAVFSFAVAAYERAASARTDASIAPVRASRVSRAWGD
>NZ_CP004386.1|WP_009894493.1|1848094_1848703_+|helix-turn-helix-transcriptional-regulator
MASSSGARRTAAPAPVAGGATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGKFEWYELTLPANGALVSNPHEPGTREHLTVLNGAIEIEAAGVTRRLKAGDTARYAADGPHAIRNAGKSEAKALLIVIHR
>NZ_CP004386.1|WP_009894495.1|1846727_1847927_-|glycine-C-acetyltransferase
MRDAYLAHLRGTLDQIRADGFYKTEREIASPQAADIRLAGGAHVLNFCANNYLGLADDSRLIAAAQAALEQDGFGMASVRFICGTQTVHKQLEAALSAFLKTDDCILYSSCFDANGGLFETLLDENDAVISDELNHASIIDGVRLSKAKRFRYKNNDLADLEAKLREADAAGARFKLIATDGVFSMDGIIANLKGVCDLADRYGALVMVDDSHAVGFIGEHGRGTPEHCGVEGRVDIITGTLGKALGGASGGYVAARREIVELLRQRSRPYLFSNTLTPSIAAASLKVLELLASDEGARLRERVRANGVHFRERMSAAGFMLVPGEHPIIPVMLGDAQVASKMADALLAEGVYVIGFSYPVVPRGRARIRTQMSAAHTPEQIDRAADAFVRVGKTLGVI
>NZ_CP004386.1|WP_009894498.1|1845683_1846715_-|L-threonine-3-dehydrogenase
MKALAKLERGPGLTLTRVKKPEVGHNDVLIKIRRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFSIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNREGAFAEYLAIPAFNAFKIPPEISDDLAAIFDPFGNATHTALSFNLVGEDVLITGAGPIGVMAVAIAKHVGARNVVITDINDYRLDLARRMGATRAVNVSRESLRDVMADLHMTEGFDVGLEMSGVPSAFTSLLESMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSGLDLSPIITHRFAVDDYEKGFAAMLSGESGKVILDWAAA
>NZ_CP004386.1|WP_009907044.1|1845349_1845559_+|hypothetical-protein
MGGIAVRSFLSAAAGTAVLLAPIRALATRGTGSVVLLNGTVMLTTLLTHQPALAFGPIVEQLTMAGAAH
>NZ_CP004386.1|WP_011400752.1|1844912_1845461_+|ATPase
MKRGRTDGRSGRIDGQARLPQIALFAAVLTRHVKPLGQYIVRIANGDPPWPMRMLQPVERCTYRAAGIDPEQAMSWKTHAIALLSLSLVGTIALYALQRAQHALQLNPQALPTVSADSAFNTAVSFAANTSVQGDAGETTLAICPRWAASPCGASCRLPPAPPCCSRRSARSPRAARAPSSC
>NZ_CP004386.1|WP_009894503.1|1844367_1844799_+|hypothetical-protein
MKYGDEEDDDARRRGRPRDSGDRSARNPLRVKAAMRMRGLVKVACITIAASQVLTAAFASLARVAGHDVESGPLLLFNFVTCALVSYWLQADARRAYLEARSSGRLHGAPNESTPPDVPANCPKRWLVILNIELNPHLLDEAQ
>NZ_CP004386.1|WP_009894504.1|1843723_1844371_+|GNAT-family-N-acetyltransferase
MPQQRVKSERAMHFACATRANGRVVLRRFDPAHDSYDELTALLHRAFTRLGRMGLNCPCVDQPAAVTRQRALAGECFVAVCNGHLVATMTLHARDLSSPCELYRRGNVATLRQFGVDPVWQGRGIGRSMLDFATRWAAARGYRHLALDTPQPAAHLVAFYTRHGFRLVDVMHFSGKGYDSAILSKPAAVSHPAAWNARELPLTPAPMLARFDRAA
>NZ_CP004386.1|WP_011401612.1|1854608_1856063_+|replication-initiation-protein
MVSMPIWTHITTDAILPETSPPTRRMATKRAKKTDVDVVSASSAELRKAVEAIAIQPKNGKITLLTRKLFNVLLAVAQQADDSGDTYRALLSDIVANSAFDSNDTALVKEHLRRMVSVQVEWSTGTSSQKPGRKWGISTLIADAEILEDPATRRVWVEFSFAPKIKKKLLDPVQYARLSLQFQSQLRSSAGLALYEICVRYLTNPSHLTMREPWEWWRPILSGTPDTEAGDEAKREYKYFKRDYLRPAIAEVNAVTNIFVELVEHREGRRVAEIQFRVSERKQPMLALDEHPNVFDSTLVDRMVKIGIPLKEAQTLYADNEENRIRAALQLTEQRVRSTTLPPVRSAPALFKDALKKGYAPPVDTVETPPPGGSAKLAAAAAANAGQADDPKARLRSEYDAYRRKEAKQLYEEQGDAEREVARASFESDVLPALGPHLRDDWRRRGLDSKLVETAFFDWLAQKTWGEPTDGDLLAFTLSQSRAA
>NZ_CP004386.1|WP_009894481.1|1856156_1857224_-|ParB/RepB/Spo0J-family-partition-protein
MKPSQFAKGFQARPDITTSEKRTALDRLNAIEGLVKSEASTPAVPASKSSKKNIPVTIVETPPTTDPIDESSQYRTWRIENRYQPGQVIELPLKAIKPSPFNPRHFYLKSSIAELAVNLAKQGQQQAIHVIPDYDNPGSYFVSDGGRRVRALKEANKESVKAIVIDLPIGIQSYKLGYDLNVQRDSQTVFDNAIVWKRFLEEKYFQSQKELAEHLGLDESTVAVALSIGKLPEAVMQEMVARPDRFGSNMAYQVGRYHTARGTDSTLRLINKILSDDLSTRQVADIVKGRASAQESPKPASRQRYAQRHEIKLNGMSVGDLKSYGEDRLELRLRGLTREKRDEILQQLERMLLSN
>NZ_CP004386.1|WP_009894479.1|1857248_1857911_-|AAA-family-ATPase
MAAEIIAVTQQKGGVGKSTIAMHLGAAFHEKGRRVLVIDADGQNTLVHWSSSSADSETGIPFPVVNLAEAGGQIHREIKKFINDYDIIIVDCPPSITEKVSGVVLLAATIAVIPTSSSPADYWSSVGLVKLIQQAQVMNEDLRAVFLLNKTEEKRMLTRELKRALEELGFPLLKTQIPTREAYKQAMALGQTVLQMNDRGAKLAAAEIRACADEIVAMLP
>NZ_CP004386.1|WP_009894478.1|1858495_1858852_+|arsenate-reductase-(glutaredoxin)
MITIYHNPRCSKSRETLALLETLNQTREAINVVEYLKQPLTVAQLKALHRQFGRPVRDMIRENEAPYKDLNLADPALSDAQLYDAVAEHPILLQRPIVVHGDKAVIGRPPEAVKSLFE
>NZ_CP004386.1|WP_009894477.1|1859146_1859344_-|zf-HC2-domain-containing-protein
MLLGKCKDITRLLSDELDRPLSLDERLRIRVHLPACTGCRNYRMQIRVLREAARIAGGNDTQRSE
>NZ_CP004386.1|WP_009908241.1|1859324_1859930_-|RNA-polymerase-factor-sigma-70
MQHARAAHDDPAYLAQLRHDLLRFARLQLRDADAAEDAVQEALAAAWAQAHRFDGQSSHKTWVFGILRNKLIDTIRARRRTINASALDAELDGEALLDRELFADNGHWAPHAKPRPWPKPETILQQRQFWMLFEACLDHLPEQIGRVFMMREFLDFAIDDICTELELKANHCSVLLYRARTRLRTCLTEKGLTTEDATGEM
>NZ_CP004386.1|WP_009901851.1|1860294_1860852_+|NAD(P)H-dependent-oxidoreductase
MAYRIAVIVGSLRRESFNRALANAVISLAPAELSFESVDIGSLPLYSQDYDADFPDAAKRFKQTIEAAQGLLFVTPEYNRSMPGVLKNALDWGSRPWGSNSWAGKPAAVLGTSPGATGTALAQQHLRNVLAYLDVPTLGQPEIFIKHDGSKIDAQGNVVNDDTRKFLQGFVDRYADWVRRHAKSA
>NZ_CP004386.1|WP_009908240.1|1860981_1863249_-|hybrid-sensor-histidine-kinase/response-regulator
MTPERPDASRPTSTDNDWEDDASFAPGAPEHDFAVRRVTLIVMLIAAIVLPCVYVAVMAYNDMRTREATARDVTMRTVRVAEEHALKVFDLSETLDARIVDLVQDLDDAAVRNAEADIHDALNTIGGGYPQVASVSIFGASGMLLANSLYYPAPHASIANRDDFVGIRDGKVIEHISRVMPGPLKAANPGPVFNTGVARRHSDGTFAGMVSIALKSSYFNAFYRDLLGGADTPMSMALTRTDGAVLASYPPASSDAAAQADSASPFGGAQGDQHAGIVRVKRDGDSEIVAYRQVGSYPVFVSCAYRTSAIRHAWYEHLSVLFISMFAPSAALWGVIWLSLKRLRAEEQAWERWQAEASMRRSIESAYRQSRKMEALGNLVGSVAHDFNNLLMIISSNVQIARRRGVQHLDTELAAIERALKNGQSLTRQLLGVARKQPLRNETIDIAQWLASCRELLKTSLGSKSTLAVDTQLDVWPVRVDVAELELAVINLAVNARDAMPHGGRFKISAHNMTFRREDGFPLTGDFVQISVEDTGLGMAPDVLARAFEPLFTTKAKGMGTGLGLPQVFAFCERSGGLATIDSEVGAGTSVRMYLPRTADAVPPVDAPNAVGEPAASTPAGLRILLVEDNSEVAAGTEALLELLGHQVTHAPNADDALRMLDDAGAAPGAPGAFDLVISDIHMPGTINGIDLAEAIERGDMKLPVILVTGYAEEFDRTRRVHARLLSKPFDIALLDELLQQIQHERDARLAGHAD
>NZ_CP004386.1|WP_009894474.1|1863754_1864123_+|response-regulator
MPLPIVIADDSLLARKLLTKALPADWDVDVHYASNGCEALALYRDGKASVMFLDLTMPDMNGYEVLETLRGEDLNTFVIVVSADIQPMAQARVRELGAVAFVAKPVTSEALLPILKEYGLYV
>NZ_CP004386.1|WP_009894473.1|1864115_1864739_+|chemotaxis-protein
MSETVLTAEQRDALQEIANLAMGRAAARLALLLGTFIELSVPRVRVVRAADVGRVLRDMTGIHDNVTAVRQGFRSDIKGEALMLCRSAGVGQLVSLVDDAYADDEFGTVTQAELVFDMANVLMGACVSSILDELGRTPVFSPPGLLGEDIALDDVFQPDVLAWSETLLLEVNFGVADDGARTHFVMLLAEDSIRHMSDALDLLLSSL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP004386_2	2.3\|1852503\|29\|NZ_CP004386\|CRT	1852503-1852531	29	NC_031074	Gordonia phage Bantam, complete genome	47669-47697	8	0.724

1. spacer 2.3|1852503|29|NZ_CP004386|CRT matches to NC_031074 (Gordonia phage Bantam, complete genome) position: , mismatch: 8, identity: 0.724

gcatgaccggtgctcaccgatcgcgcttg	CRISPR spacer
aggggaccggtgctcgccgagcgcgctac	Protospacer
. . ***********.**** ******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1684340 : 1743652

Xanthomonas_phage(25.0%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009894757.1\|1684340_1684859_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_009894755.1\|1684860_1686741_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_009894753.1\|1686737_1687787_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_009894751.1\|1687805_1688876_+	type VI secretion protein ImpA	NA	NA	NA	NA
WP_009894750.1\|1688931_1689960_+	fimbrial protein	NA	NA	NA	NA
WP_038707671.1\|1689992_1691351_+	hypothetical protein	A0A292GJ55	Xanthomonas_phage	2.6e-110	49.7
WP_025992055.1\|1691243_1694696_-	RHS repeat protein	NA	NA	NA	NA
WP_004523693.1\|1694708_1694978_-	PAAR motif protein	NA	NA	NA	NA
WP_080751021.1\|1695052_1697638_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.8e-35	26.0
WP_009894738.1\|1697705_1698275_-	hypothetical protein	NA	NA	NA	NA
WP_009894736.1\|1698444_1702353_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_009894733.1\|1702367_1703669_-	type VI secretion system protein TssL	NA	NA	NA	NA
WP_009894732.1\|1703665_1705015_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_011400803.1\|1705020_1705563_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_009894730.1\|1705690_1706173_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_009894729.1\|1706373_1707873_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_009894728.1\|1707906_1708446_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_009894727.1\|1708789_1710466_-	OmpA family protein	NA	NA	NA	NA
WP_080751036.1\|1710468_1711125_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_025988574.1\|1711188_1711761_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_080511335.1\|1711753_1714387_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_025370058.1\|1714609_1715350_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_011400800.1\|1715416_1715971_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_009907087.1\|1716752_1717151_+	hypothetical protein	NA	NA	NA	NA
WP_080556626.1\|1717365_1718853_+	PhoPQ-regulated protein	NA	NA	NA	NA
WP_043295637.1\|1718928_1721244_-	hypothetical protein	K4F7R4	Cronobacter_phage	8.4e-08	46.1
WP_154660021.1\|1722088_1722445_+	hypothetical protein	NA	NA	NA	NA
WP_099005207.1\|1722742_1723500_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_009907084.1\|1723607_1725149_+	membrane protein	NA	NA	NA	NA
WP_038707668.1\|1726157_1728224_+	FUSC family protein	NA	NA	NA	NA
WP_009894707.1\|1728220_1728445_+	DUF1656 domain-containing protein	NA	NA	NA	NA
WP_009894706.1\|1728446_1729346_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_009894704.1\|1729339_1730773_+	TolC family protein	NA	NA	NA	NA
WP_009894703.1\|1730772_1731972_+	transcriptional regulator CynR	NA	NA	NA	NA
WP_009894702.1\|1732104_1732350_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_127446348.1\|1732477_1732789_+	hypothetical protein	NA	NA	NA	NA
WP_009894700.1\|1732977_1733301_+	hypothetical protein	NA	NA	NA	NA
WP_009907082.1\|1733862_1734786_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009894697.1\|1735417_1736560_+	porin	NA	NA	NA	NA
WP_009894695.1\|1737036_1737393_+	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_004523719.1\|1738202_1738895_-	hypothetical protein	NA	NA	NA	NA
WP_009894689.1\|1739367_1739694_+	thioredoxin family protein	NA	NA	NA	NA
WP_004523721.1\|1739713_1740133_+	YjbQ family protein	NA	NA	NA	NA
WP_043295640.1\|1740547_1740811_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_043295642.1\|1740820_1742356_-	DUF2875 domain-containing protein	NA	NA	NA	NA
WP_155295690.1\|1742441_1743652_-\|transposase	IS3-like element ISButh2 family transposase	A0A1B0Z042	Pseudomonas_phage	3.5e-98	62.7

DBSCAN-SWA_2

2437768 : 2508319

Vibrio_phage(25.0%)

holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009893784.1\|2437768_2438536_-\|holin	phosphocholine cytidylyltransferase family protein	NA	NA	NA	NA
WP_009907987.1\|2438574_2439576_-	HpnL family protein	NA	NA	NA	NA
WP_009907986.1\|2439572_2440346_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_009907985.1\|2440342_2441038_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_009893778.1\|2441400_2442915_+	acetyl-CoA hydrolase/transferase family protein	NA	NA	NA	NA
WP_009907984.1\|2444535_2445480_+	hypothetical protein	NA	NA	NA	NA
WP_009901015.1\|2445513_2446065_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_015602570.1\|2446061_2447573_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_009901013.1\|2447716_2448244_+	type VI secretion protein	NA	NA	NA	NA
WP_009901012.1\|2448322_2448754_+	GPW/gp25 family protein	NA	NA	NA	NA
WP_009901011.1\|2448767_2450630_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_009893772.1\|2450626_2451616_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_009893771.1\|2451618_2454462_+	type VI secretion system ATPase TssH	A0A2I7REQ1	Vibrio_phage	1.2e-61	27.0
WP_011401423.1\|2454452_2456744_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_009893768.1\|2456912_2459201_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_009893766.1\|2459204_2461421_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_009893765.1\|2461420_2462491_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_009893763.1\|2462493_2463210_+	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_009893761.1\|2463249_2463639_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_009893760.1\|2463644_2464238_+	hypothetical protein	NA	NA	NA	NA
WP_009893759.1\|2464234_2465596_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_011401420.1\|2465621_2467406_+	OmpA family protein	NA	NA	NA	NA
WP_009893757.1\|2467402_2470897_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_009893756.1\|2470955_2471315_+	hypothetical protein	NA	NA	NA	NA
WP_025992137.1\|2471337_2471769_+	hypothetical protein	NA	NA	NA	NA
WP_011401418.1\|2471989_2472361_+	hypothetical protein	NA	NA	NA	NA
WP_102815683.1\|2472537_2472654_-	hypothetical protein	NA	NA	NA	NA
WP_041223615.1\|2474116_2475385_+	glycosyltransferase	NA	NA	NA	NA
WP_009896564.1\|2475381_2476953_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_009896566.1\|2477085_2478051_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_025404178.1\|2478103_2479666_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_025404204.1\|2479860_2481129_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011401416.1\|2481580_2483254_-	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	3.0e-55	31.0
WP_080511309.1\|2483372_2484944_-	glycoside hydrolase 68 family protein	NA	NA	NA	NA
WP_009907975.1\|2485130_2486147_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_009898059.1\|2486492_2487692_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	1.1e-11	26.8
WP_009898058.1\|2487877_2488903_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_080511307.1\|2489060_2489300_+	hypothetical protein	NA	NA	NA	NA
WP_009898057.1\|2489311_2490586_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	6.9e-105	53.4
WP_009907974.1\|2490657_2491629_+	membrane dipeptidase	NA	NA	NA	NA
WP_009898053.1\|2491776_2492310_+	4-vinyl reductase	NA	NA	NA	NA
WP_009907973.1\|2492370_2494434_+	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_009898050.1\|2494436_2496362_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_009907972.1\|2496366_2497548_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_009898046.1\|2497544_2498330_+	drug:proton antiporter	NA	NA	NA	NA
WP_009898044.1\|2498381_2499623_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_009898043.1\|2499643_2500783_+	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_009898041.1\|2500892_2501756_+	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009898039.1\|2501935_2503591_+	APC family permease	NA	NA	NA	NA
WP_009898038.1\|2503677_2504553_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_011401414.1\|2504696_2505596_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009907971.1\|2505731_2507285_+\|holin	choline-sulfatase	NA	NA	NA	NA
WP_050791319.1\|2507320_2508319_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP004385

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP004386

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection