CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP004382	Burkholderia thailandensis E254 chromosome 2, complete sequence	1 crisprs	csa3,cas3,DinG	0	0	4	0
NZ_CP004381	Burkholderia thailandensis E254 chromosome 1, complete sequence	3 crisprs	DEDDh,cas3,WYL,RT,DinG	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP004382_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP004382_1

553620-553711

Orphan

Consensus_repeat	Method
GCGACGCGCGCAAGGCCGAAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP004382_1

>merge|NZ_CP004382|1|553620-553711|CRISPRCasFinder
GCGACGCGCGCAAGGCCGAAGCGGGCGCGAAGCGCACGGCCGACGACGACAGGCACCGCAGGCACGACGGCGACGCGCGCAAGGCGGAAGCG

>NZ_CP004382|1|1|553620-553711|CRISPRCasFinder
GCGACGCGCGCAAGGCCGAAGCG	GGCGCGAAGCGCACGGCCGACGACGACAGGCACCGCAGGCACGACG
GCGACGCGCGCAAGGCGGAAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP004382.1\|WP_011401141.1\|562160_563792_+\|cytochrome-c-methylamine-utilization-protein	unknown	unknown	gnl\|CDD\|224771
NZ_CP004382.1\|WP_025370246.1\|551066_552083_-\|1-aminocyclopropane-1-carboxylate-deaminase	unknown	unknown	gnl\|CDD\|183494
NZ_CP004382.1\|WP_009896595.1\|552275_552785_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
NZ_CP004382.1\|WP_009907539.1\|559576_560467_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|226145
NZ_CP004382.1\|WP_025370244.1\|555979_557242_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP004382.1\|WP_009896602.1\|546998_547340_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004382.1\|WP_009907544.1\|545634_546825_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP004382.1\|WP_011401139.1\|565705_565918_+\|DUF3079-domain-containing-protein	unknown	unknown	gnl\|CDD\|337966
NZ_CP004382.1\|WP_009896599.1\|550059_550413_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004382.1\|WP_009899924.1\|557442_558168_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP004382.1\|WP_025370245.1\|554997_555618_-\|HAD-hydrolase-like-protein	unknown	unknown	gnl\|CDD\|319799
NZ_CP004382.1\|WP_127446362.1\|547364_547646_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004382.1\|WP_011401144.1\|558217_559525_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP004382.1\|WP_009896600.1\|549330_549972_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004382.1\|WP_011401150.1\|547761_549153_+\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|293737
NZ_CP004382.1\|WP_009896587.1\|563954_564815_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|377216
NZ_CP004382.1\|WP_011401142.1\|560685_562164_+\|ser/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|277318
NZ_CP004382.1\|WP_009896586.1\|565128_565401_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004382.1\|WP_009896604.1\|543330_545361_+\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|376718
NZ_CP004382.1\|WP_043296813.1\|542046_542991_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651

Protein	Function_ID	Function_description	E-value
NZ_CP004382.1\|WP_011401141.1\|562160_563792_+\|cytochrome-c-methylamine-utilization-protein	gnl\|CDD\|224771	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism].	2.48399e-82
NZ_CP004382.1\|WP_011401144.1\|558217_559525_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.05988e-132
NZ_CP004382.1\|WP_009907539.1\|559576_560467_+\|amidohydrolase-family-protein	gnl\|CDD\|226145	COG3618, COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	1.26079e-68
NZ_CP004382.1\|WP_025370244.1\|555979_557242_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.27954e-73
NZ_CP004382.1\|WP_011401139.1\|565705_565918_+\|DUF3079-domain-containing-protein	gnl\|CDD\|337966	pfam11278, DUF3079, Protein of unknown function (DUF3079). This family of proteins with unknown function appears to be restricted to Proteobacteria.	1.88329e-34
NZ_CP004382.1\|WP_025370246.1\|551066_552083_-\|1-aminocyclopropane-1-carboxylate-deaminase	gnl\|CDD\|183494	PRK12390, PRK12390, 1-aminocyclopropane-1-carboxylate deaminase; Provisional.	0
NZ_CP004382.1\|WP_009899924.1\|557442_558168_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	3.20406e-58
NZ_CP004382.1\|WP_025370245.1\|554997_555618_-\|HAD-hydrolase-like-protein	gnl\|CDD\|319799	cd04303, HAD_PGPase, phosphoglycolate phosphatase, similar to Synechococcus elongates phosphoglycolate phosphatase PGP/CbbZ. Phosphoglycolate phosphatase catalyzes the dephosphorylation of phosphoglycolate; its activity requires divalent cations, especially Mg++. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.01245e-67
NZ_CP004382.1\|WP_009896595.1\|552275_552785_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	6.18054e-47
NZ_CP004382.1\|WP_009896604.1\|543330_545361_+\|BCCT-family-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	0
NZ_CP004382.1\|WP_011401150.1\|547761_549153_+\|alkaline-phosphatase-family-protein	gnl\|CDD\|293737	cd16013, AcpA, acid phosphatase A. Acid phosphatase A catalyzes the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at low pH. AcpA hydrolyzes a variety of substrates, including p-nitrophenylphosphate (pNPP), p-nitrophenylphosphorylcholine (pNPPC), peptides containing phosphotyrosine, inositol phosphates, AMP, ATP, fructose 1,6-bisphosphate, glucose and fructose 6-phosphates, NADP, and ribose 5-phosphate. AcpA is distinct from histidine ACPs and purple ACPs, as well as class A, B, and C bacterial nonspecific ACPs.	2.05264e-98
NZ_CP004382.1\|WP_009896587.1\|563954_564815_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|377216	pfam04072, LCM, Leucine carboxyl methyltransferase. Family of leucine carboxyl methyltransferases EC:2.1.1.-. This family may need divides a the full alignment contains a significantly shorter mouse sequence.	4.81736e-51
NZ_CP004382.1\|WP_011401142.1\|560685_562164_+\|ser/threonine-protein-phosphatase	gnl\|CDD\|277318	cd00839, MPP_PAPs, purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.48527e-09
NZ_CP004382.1\|WP_009907544.1\|545634_546825_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.37834e-55
NZ_CP004382.1\|WP_043296813.1\|542046_542991_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	6.10349e-56

>NZ_CP004382.1|WP_009896595.1|552275_552785_+|winged-helix-turn-helix-transcriptional-regulator
MCATKKSAPKAAAQPAGADIDRVDRAILRMLQRDASISNVALAAKVNLSAPACLRRVERLKEMGLIRGIVALLEPKALNAGMLVMIGVVLDRSTPDSFGAFEQAAQKVSGCMECHVVTGEFDYIMLIRTRDSDTFNRLHAEQLLYLPGVRQIRTFVVLKEILSTTSFPI
>NZ_CP004382.1|WP_025370246.1|551066_552083_-|1-aminocyclopropane-1-carboxylate-deaminase
MNLQKFPRYPLTFGPTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLVPDGFDIGFRKSWEDALADVRARGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGYKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGIDASAKPAQTREQILRIARNTADRVELGRDIASGDVVLDERFGGPEYGLPNEGTLEAIRLCAKLEGVLTDPVYEGKSMHGMIEKVRLGEFPAGSKVLYAHLGGVPALNAYSFLFRDG
>NZ_CP004382.1|WP_009896599.1|550059_550413_-|hypothetical-protein
MGFVGGERRRARIAESNEIDGATLITKVASEPLAALGGARSEATPPLTLYGAYRQGFADYLAGRPNPYRIGSRLAGIWHEGHAEAASNDALDFTARARTCGGARTAANPVAFFRRRR
>NZ_CP004382.1|WP_009896600.1|549330_549972_+|hypothetical-protein
MKIRSGLVAELTVNLLLPWAAYRAAAPHWGETGGLIASAVPPLAWSVIELARFRRIDALSAVVLFGIVLSIAAALAGGSPRMLLMRESLASGAIGVAFLGSLALRKPLVFHLARATIAREAHDGAARIDALWAERPAFVSAMRLMTLVWGSGLVAENLLRAWMVWNWPVERVLVVAPFVGYGIYGALMLWTLWYRKVMRAHALAGLPRGGALG
>NZ_CP004382.1|WP_011401150.1|547761_549153_+|alkaline-phosphatase-family-protein
MAKILENVEHIVVVMFENRSFDTMLGWLYPPGTQPAHVLPARGSPQFDGLKPDMSNPSRAGKTIAVTREATNNVIPDPQETFVNVTSQILGPGGAGNPWPPMQGFVVNYETTRTSDPGHVMQCHSVAQLPTLTALARAYAVSDAWFASVPSQTWPNRAFAHAGTSNGHVNNGAIPDPLEWDVPTIFDVLSSIGASWAVYSDTAVTPSLTHTMFPSLWNDKYADNFERFPDFVAACKNDALPRYAFVEPSFLFEPNDQHPPHDVLAGDKFLHDIWTAISTSPGWPRTLLVVTYDEHGGCFDHVLPPANATPPDAASNPGDETFEFDRFGVRVPAVVVSPYIEAGTVFRSPTNVPYDHTSILATLRDWLAIAPDKMLKSARIANAPTLAQLFTRSVPRGDLPAIAAPSADFVQPPPSAPLNDLQKSLVTGTSRRDGNDPAASVAPIATRQHALDFFTRRATAKPT
>NZ_CP004382.1|WP_127446362.1|547364_547646_+|hypothetical-protein
MTTEPARASGGARSFTHRADRAAIRRHRQRHLRHQRGYRRNESVFMGGGANSAPGDEFAAMIETAPARAHPPARRVAGTPAAPPCFSRNIGYT
>NZ_CP004382.1|WP_009896602.1|546998_547340_+|hypothetical-protein
MIAPATPAALAAGATTFAEWAALGTLALLYLFGLGWSLRGALARSRGRAYWLACAALIAGGTACALLAKPSAPNSGEMPPGFGLGVLVVMLGIAGTTAGCAWQAIARLRHGQR
>NZ_CP004382.1|WP_009907544.1|545634_546825_-|serine-hydrolase
MNLESVTPATAAAAATDHAALAGRLDRVFATALAERRVVGAVALVARGGELVYRRAHGFAERETQRPMREDTLFRLSSITKPIVTVAVLRLVAAGRMALDAPITRWLPEFAPALPDGRAPALTVHQLLTHTAGLSYWLLEAPGSAYHTLGISDGIDLVDFDLAENLRRIAAAPLAFEPGSAWRYSLALDVLGAAIERETGLALPDAVAQLVTTPLGLRDTGFVAADPARFAAAYANAAPQPVRITDNLDVPLPEGHGVAVRFAPSRVFDATAFASGGAGMYGSADDVLRVLETIRTGGDGFLPAALAAAMRTDHTGPAAETRGPGWGFGYGGAVLSDPARAQSPQSAGTLQWGGVYGHSWFVDAARGLTVLLMTNTAYEGMSGPLTVEVRDAVYAV
>NZ_CP004382.1|WP_009896604.1|543330_545361_+|BCCT-family-transporter
MPSSRSAPRTTLKPQVVVPSLAVIGALLAVCALLPNEAGALFGAGQQWIVERFDWFYVLAITTFLIFIVLIAASRFGNIKLGPDDAEPEFSFVSWTAMLFAAGMGIGLMYFGVGEPIQHYLKPPTALGGTPAAAREAMLMSFFHWGLHAWATYGVMGLVLAYFGFRYNLPLTLRSGLYPVLREGVNGWIGHTVDAFALVGTVAGIAVTLGYGVLQLSAGLHTIAGWQTDSDAFRIGLVAVVVALAGLSAASGLDKGVRRLSELNLMLAFALLAFVVVAGPTSFLLRAFGDNVGEYLSKLVSLSFRTYAYEAPNDKGWFGGWTLLYWAWWVSWSPFVGMFIARISRGRTIREFVIGVLLVPTAFNLVWMTAFGNSAIWLDTHAAAGALAQTATNVDALLFRFFDYLPLTQLLSVAAIVLIAVFFVTSADSGAFVIDAIATRGAPHSPVWQRLFWAAVLGVTASVLLVAGGLKALQALTLVAALPVALVMLALCYGLWRGLKADHAHYSQEMAPATSFWTGQHWRQRLSQILRHTTGADARRFIAQTVEPALRKVAEELKAGGVDAHVARDDDDAVRLTVPAPAQRDFVYGARVSRKSAPAFRIREAAEPEPQREHVCEVLTFFADGRLGYDIEYLRGDEIIADVLRQYERYVSLASDTRTHLLNRAPEHAGPDGLTQ
>NZ_CP004382.1|WP_043296813.1|542046_542991_-|MurR/RpiR-family-transcriptional-regulator
MSDSPDSPDSPPDAEPSIAARIAAVLPSLTPIHRRMGEYVLANPFRAATMRIDELANAVDASIATANRFARALGFDGYPALRAALVRGFEATLAPVERLRSAQEHEAGARGGELIDASFEQALANLERTRARLDRANVEAAVDSLLAARRIFIVGMGASAFLAGLMEHGLSVYRDNVQSLALLGGPTDAARRLFSARGDDLVVAIAFPRYVHDTIELTRRAAERGAPVLAITDGPDSPVAPFAARALFVHAERRLAATSEAAVLALVEALIDALAHRSQRSARAAAEVTEFMLPWLEARGACAAPPRRSRKTDR
>NZ_CP004382.1|WP_025370245.1|554997_555618_-|HAD-hydrolase-like-protein
MAYKLIAFDFDGTLADSLACFLLALSESARQHGFRAIDGALLPQVRGMSAHEIVKLLGVPPWKVPLIAADMRRRMHARASDVRLFAGIDATLRALAQRGTRIAIATSNSEAVVRAIAGPATCAHIRHFSCGISLFGKARRLRALAHASGFACADVLYIGDEVRDAQAADRAGIAFRGVAWGYTAPDALQAHCRMPLIERPEELLAL
>NZ_CP004382.1|WP_025370244.1|555979_557242_-|MFS-transporter
MTKIARRLMPLLVIMFLIAFIDRQNVGFAKLQMVHALGMTETSYGLGASLFFIGYLLFEVPSTLALHRFGARLWLARIMMTWGVITVLLGFTHSTSVFYVFRFLLGVAEAGFYPGVIYYLTLWFPQSHRTRVLGLFTLGSALANMLGSLAGGLLLSLDGRLGLAGWQWVFVATGLPAVAVAFVALRYLPESVERATFLADDEKRVVLAALKREASPEAVSESPWRALVDPRVLMFALAYMLMSTSLYGVTYWLPTLLKSSGVPASLNGLLNMIPWAIAALLLLWLPARLKRERLVLKAMAIVAGVGVAGFALSLALPGLPLCFAALVLGGACIPLLYPCFWSLPPRFFSGARAAASIAAINSIGNLGGFFAQNLMPYVGKAAGSTSAPMLVPVVCLAALGVGMLAAASVAGRRRAAGMAA
>NZ_CP004382.1|WP_009899924.1|557442_558168_+|GntR-family-transcriptional-regulator
MHATDDRLPRYQRLRDELAALIAARHWRPGEAIPTEQALAKRYDVAIGTVRKAVDLLVADGMLERFQGRGTFVRRASFDSSLFRFFRFQSKHGERRIPESRILRREVVEATSAVAAALQIPARAPVIEMTRVRLIDGAPMLAEEIWLPYDRFAAFSRLELDSIGDLLYPVYEAHCNQIVASATETLTVEAIGPVHARLLRIEPGTPAVVIERLAYGYDRRPLEWRRSRGPASEFIYQAEIR
>NZ_CP004382.1|WP_011401144.1|558217_559525_+|MFS-transporter
MFEWFATVSLRERRTFWACFGGWALDALDMQMFSLVIPAIVAEWSLSRTQAGFVGGATLVASAIGGWVAGMLSDRFGRVRTLQWTIACFAVGTFACAFATSYPQFVVLKALQGAGFGGEWAAGAVLMAETIRAEHRGKAMGAVQSAWALGWAAAVLLYALAFSLMPAALAWRAMFAIGLLPALLIVYVRRGIVEPSVSASSPSNTPAAARASVPLVGIFSRDTRRMTLIGALLGVGAHGGYYALMTWLPTYLKVERHLSVLGTGGYLAVIIVAFFCGCIASAQLLDRIGRRGTILAFAACCIATVIAYLFLPLGNAAMLVLGFPLGFFAAGIPASMGALFNELYPRGTRGTGVGFCYNFGRVASAGFPVLVGHMSADMPLGTAIGIDAAIAYSIVVVAVLLLPETRARALDDLAVAHATADARADRIGAPGARHR
>NZ_CP004382.1|WP_009907539.1|559576_560467_+|amidohydrolase-family-protein
MSGQEWSACAHAAAMRRAASDITAIDAHAHVFETGLPLAGRRRYAPDYDAPLDAYLAQLDAHRVSHGVLVQPSFLGSDCRYLLRALAQQPRRLRGVAVIDAGCEPHVLDTLDRAGVVGIRLNLIGMPDPALDGPAWRATLERIAALRWHVELHAQAQRLGRLIAPLLAHRVNVVVDHFGRPNPACGIADAGFRDLLRTAATRRVWVKVSGVYRNWPLAPGEANARAQEAFDALAAEFGAERLVWGSDWPHTQFERTETFGRAFALARQWMRDDAMRRAIFVETPARLFRFGELHGA
>NZ_CP004382.1|WP_011401142.1|560685_562164_+|ser/threonine-protein-phosphatase
MPRPILRRAAALLPTLASAALLQACTSSIDNQPDAASASANIQAAWVEIGDANQAIARVITSYAPPAAAPGEAAPAVCPQLNADGKIARMTLRAAAGTAAQRPTASDPADSKPSGFPVSVCEATVPANAKGVTVAGRALPLPKAEPQRVAIIADTGCRMKKADNAFQACSDATVWPFATIAASVAKLNPDLVLHVGDYHYRENACPPDIAGCKNSPWGYGWDAWRADLFEPAAPLLAKAPWVVVRGNHEECARAGQGWFRFLDPRPYSDARSCNDPANDGNANYSEPYAVPLGTGSQVIVFDTAKVGRAALKTTDVQFQIYQKQFQTVAALANKPGMSTTIFTNHHPILAFAPIPGSTPAPGNLALQSVMSSLYAQAYYPPGVQIALHGHVHDFQAINFASGHPATIVSGNGGDNLDVALPDPFPANLTPAPGVVIDKLSHNNSFGFLIMERRAAPARGWTFKAYTAAGKLLASCDQAGTTLTCDKTGFVAP
>NZ_CP004382.1|WP_011401141.1|562160_563792_+|cytochrome-c-methylamine-utilization-protein
MTGRRRSSAARRAVPAAALTARASVTAFALGPAALGTTRTRRTVLTLSTIVRAACGALAACASAIALASGPAAPDATHSTHAARPASAASSTSPMNPTSTPGASGPAHAKAALDAARAKAAPPSPPTTVLLPGAPPERVVDTIGRGTPQVASKVDPTAAVFRPDPTLAALGKRVFFDPALSEPRGMSCASCHDPGRAFAPTLSPAALAGPRVPQGSRPGHFSRRNAPSLLYVRYVPRRHFYQDDDALAPAPFGGLFSDGRADTLAEQLRGPLFDPDEMNNASAAALMRKIGRTGLGAALAGRFGPSVRRDPERMVRVLGEAMQAYLQSDEMAPFSSRYDAYVTKRAPLTPQEMRGLALFRNPDKGNCMSCHTLSDTASRPERSLFTDFGYDAIAVPRNRALPANRDPRHFDNGLCDTAAKLRWPEPTQWCAYLRTPGLRNVAIKESFMHNGVFDTLRDAVAFYNTRSTDPARWYHGRDTFDDVPRAYRGNVNVNSTPMNRRPGTPPAMTDADVDDLVAFLRTLTDARYVGLMPTAPDGKAARP
>NZ_CP004382.1|WP_009896587.1|563954_564815_+|class-I-SAM-dependent-methyltransferase
MSNQSIAAPDSTAVRVALWRALHVEIDAPPHVLDDGIGLELAAPDDDWRSRPDMAPQATRGYRASIVGRARFVEDLIGEQAERGVAQYVVLGAGLDTFAQRRAKLASHLRVFEIDQPGTQAWKRQRLIALGYGVPEWLRLVPVDFEASGAWRAQLSAAGFDDSRPAVVSSTGVSMYLTRDAIAGTLRRIATLAPGSTLAMTFLLPLELIDDPAERAQHAAVYERARAAGTPFVSFFSPAEMLALAREAGFREVRHVSTDDLVRRYFEGRPDGLRPSSGEAFLVAST
>NZ_CP004382.1|WP_009896586.1|565128_565401_+|hypothetical-protein
MEHLVRIVNDTDRQILAWLRNQVGDERVERAAQHMGRVRKPYLSAVCRYLGVWPPISLRYQTRRAEVDHAVGDRYLTLIRQHLATHAASR
>NZ_CP004382.1|WP_011401139.1|565705_565918_+|DUF3079-domain-containing-protein
MAKKFPLHPKHPERNCWGCDRYCSVDALSCGNGSDRTQHPVELLGDDWYEWEQENEAAQKQMQQTQAAAR

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

174438 : 286656

113

Burkholderia_virus(55.56%)

holin,terminase,tail,plate,capsid,lysis,protease,head,portal,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009891862.1\|174438_175698_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-43	44.4
WP_043297026.1\|176011_176158_-	hypothetical protein	NA	NA	NA	NA
WP_004543837.1\|176154_176463_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_043297028.1\|177004_177547_-	hypothetical protein	NA	NA	NA	NA
WP_041223775.1\|178072_179092_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	3.6e-19	34.6
WP_009897157.1\|179093_179825_+	response regulator transcription factor	NA	NA	NA	NA
WP_009897156.1\|179917_180802_-	FkbM family methyltransferase	Q58M88	Prochlorococcus_phage	6.7e-06	26.8
WP_025370294.1\|180962_182465_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_009897154.1\|182906_184763_-	chloride channel protein	NA	NA	NA	NA
WP_009897153.1\|184796_185210_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_009897152.1\|185341_186520_-	HPP family protein	NA	NA	NA	NA
WP_009897150.1\|186865_187834_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009900276.1\|187948_189037_-	ionic transporter y4hA	NA	NA	NA	NA
WP_043296735.1\|189305_190631_+	phenylacetate--CoA ligase	NA	NA	NA	NA
WP_009897143.1\|190722_191394_+	NAAT family transporter	NA	NA	NA	NA
WP_009907695.1\|191661_192534_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_043296737.1\|192934_193639_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_080755226.1\|193802_194822_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_009897131.1\|195591_196113_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_043296741.1\|196109_196925_+	anti-sigma factor	NA	NA	NA	NA
WP_043296743.1\|196968_197784_+	YceI family protein	NA	NA	NA	NA
WP_009897126.1\|197823_198183_+	hypothetical protein	NA	NA	NA	NA
WP_009897125.1\|198367_198877_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_009897122.1\|198873_199878_+	DUF4880 domain-containing protein	NA	NA	NA	NA
WP_043296744.1\|200002_202588_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_127462218.1\|202604_202871_-	hypothetical protein	NA	NA	NA	NA
WP_154660030.1\|202914_203145_-	hypothetical protein	NA	NA	NA	NA
WP_009897119.1\|203160_203853_+	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_009897117.1\|203964_205224_-	monooxygenase	NA	NA	NA	NA
WP_009907682.1\|205701_205965_-	hypothetical protein	NA	NA	NA	NA
WP_009897113.1\|206042_206336_-	hypothetical protein	NA	NA	NA	NA
WP_009897112.1\|206666_206939_+	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_009897110.1\|207030_208425_-	heavy metal sensor histidine kinase IrlS	W8CYF6	Bacillus_phage	8.9e-21	28.0
WP_009897108.1\|208421_209111_-	heavy metal response regulator transcription factor IrlR	W8CYM9	Bacillus_phage	6.3e-36	36.8
WP_009897107.1\|209117_212351_-	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
WP_009897106.1\|212416_213871_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_025370289.1\|213881_215258_-	TolC family protein	NA	NA	NA	NA
WP_019255747.1\|215528_215810_-	hypothetical protein	NA	NA	NA	NA
WP_162482703.1\|216144_216378_+	hypothetical protein	NA	NA	NA	NA
WP_038707731.1\|216762_217248_-	membrane protein	NA	NA	NA	NA
WP_043037497.1\|217507_217666_+	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_009897098.1\|217895_218381_+	YbaK/EbsC family protein	NA	NA	NA	NA
WP_009897097.1\|218518_218857_-	helix-turn-helix domain-containing protein	A4JWW9	Burkholderia_virus	5.4e-57	100.0
WP_004532752.1\|219237_220020_+	hypothetical protein	A4JWW8	Burkholderia_virus	6.7e-143	100.0
WP_009897093.1\|220335_220557_+	hypothetical protein	A4JWW6	Burkholderia_virus	1.6e-38	100.0
WP_025404186.1\|221047_222034_+	phosphoadenosine phosphosulfate reductase family protein	Q8W6P3	Burkholderia_virus	3.4e-144	77.0
WP_080755228.1\|221850_223458_+	DNA cytosine methyltransferase	Q6V7R9	Burkholderia_virus	5.2e-65	38.1
WP_009897085.1\|223457_225251_+	replication endonuclease	A4JWW0	Burkholderia_virus	0.0e+00	99.3
WP_009971787.1\|225266_225533_+	ogr/Delta-like zinc finger family protein	A4JWV9	Burkholderia_virus	3.1e-44	100.0
WP_004532731.1\|225529_225736_+	ogr/Delta-like zinc finger family protein	A4JWV8	Burkholderia_virus	8.7e-34	100.0
WP_038778436.1\|225825_226479_+	AAA family ATPase	A4JWV7	Burkholderia_virus	4.2e-114	100.0
WP_009897078.1\|226712_226835_+	CopG family transcriptional regulator	A4JWV6	Burkholderia_virus	5.9e-14	100.0
WP_009897076.1\|226937_227471_+	bacteriophage gp29 protein	A4JWV5	Burkholderia_virus	2.4e-96	99.4
WP_043296749.1\|227467_228205_+	VRR-NUC domain-containing protein	A4JWV4	Burkholderia_virus	2.9e-132	99.2
WP_006027262.1\|229924_230221_+	type II toxin-antitoxin system RelE/ParE family toxin	A4JWV2	Burkholderia_virus	5.6e-50	99.0
WP_004202809.1\|230223_230580_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	3.9e-42	100.0
WP_023359646.1\|230623_231679_-\|portal	phage portal protein	A4JWV0	Burkholderia_virus	3.4e-206	99.4
WP_043297030.1\|231675_233445_-\|terminase	terminase ATPase subunit family protein	A4JWQ1	Burkholderia_virus	0.0e+00	99.7
WP_015985028.1\|233588_234398_+\|capsid	GPO family capsid scaffolding protein	A4JWQ0	Burkholderia_virus	1.3e-144	100.0
WP_038729266.1\|234431_235445_+\|capsid	phage major capsid protein, P2 family	K4NZP8	Burkholderia_phage	1.6e-189	99.7
WP_043296752.1\|235441_236131_+\|terminase	terminase endonuclease subunit	A4JWP8	Burkholderia_virus	1.9e-117	99.1
WP_009909356.1\|236230_236710_+\|head	head completion/stabilization protein	A4JWU5	Burkholderia_virus	5.8e-81	100.0
WP_043296753.1\|236709_236961_+	hypothetical protein	A4JWU4	Burkholderia_virus	8.4e-39	98.8
WP_043296755.1\|236957_237164_+\|tail	tail protein	K4PAW7	Burkholderia_phage	6.9e-31	98.5
WP_004524439.1\|237178_237523_+	membrane protein	K4NZQ3	Burkholderia_phage	2.9e-50	100.0
WP_004524440.1\|237524_237797_+\|holin	phage holin family protein	K4NX91	Burkholderia_phage	8.8e-42	100.0
WP_043296757.1\|237793_238606_+	DUF3380 domain-containing protein	A4JWZ0	Burkholderia_virus	1.5e-145	96.7
WP_043296759.1\|238602_239043_+\|lysis	LysB family phage lysis regulatory protein	K4NXJ2	Burkholderia_phage	4.0e-68	95.2
WP_043296761.1\|239147_239564_+\|tail	phage tail protein	A4JWT7	Burkholderia_virus	1.6e-71	99.3
WP_043296764.1\|239560_240028_+	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	3.4e-78	99.4
WP_009897040.1\|240154_240685_+	hypothetical protein	K4NX96	Burkholderia_phage	3.0e-94	100.0
WP_043296767.1\|240850_241627_-	site-specific DNA-methyltransferase	K4NZW3	Burkholderia_phage	1.2e-147	98.8
WP_043296769.1\|241800_242481_+\|plate	phage baseplate assembly protein V	K4NXJ5	Burkholderia_phage	2.0e-119	96.9
WP_043296771.1\|242477_242840_+\|plate	baseplate assembly protein	K4PAX6	Burkholderia_phage	4.0e-58	93.3
WP_043296773.1\|242836_243742_+\|plate	baseplate assembly protein	K4NZR5	Burkholderia_phage	1.5e-157	95.3
WP_009897027.1\|243734_244289_+\|tail	phage tail protein I	A4JWT0	Burkholderia_virus	3.8e-100	100.0
WP_043296775.1\|244299_246663_+	phage Tail collar domain protein	A4JWY0	Burkholderia_virus	0.0e+00	98.3
WP_043296777.1\|246679_247351_+\|tail	caudovirales tail fiber assembly protein	A4JWS8	Burkholderia_virus	1.7e-115	98.7
WP_043296779.1\|247406_248579_+\|tail	phage tail sheath protein	A4JWS7	Burkholderia_virus	8.3e-222	99.0
WP_009897021.1\|248594_249104_+\|tail	phage major tail tube protein	K4NZR9	Burkholderia_phage	1.5e-90	95.3
WP_015985038.1\|249161_249506_+\|tail	phage tail assembly protein	A4JWS5	Burkholderia_virus	7.9e-56	100.0
WP_004552648.1\|249514_249628_+\|tail	GpE family phage tail protein	A0A089FGX3	Burkholderia_phage	5.4e-14	100.0
WP_004534375.1\|249630_252591_+	hypothetical protein	A4JWS3	Burkholderia_virus	0.0e+00	100.0
WP_009914999.1\|252608_253034_+\|tail	phage tail protein	A4JWS2	Burkholderia_virus	3.3e-72	100.0
WP_043296782.1\|253033_254134_+	phage late control D family protein	A4JWS1	Burkholderia_virus	1.2e-201	99.2
WP_009897004.1\|255106_255436_-	H-NS histone family protein	NA	NA	NA	NA
WP_009897002.1\|255449_255965_-	ProQ/FinO family protein	NA	NA	NA	NA
WP_154660029.1\|256169_256562_+	hypothetical protein	NA	NA	NA	NA
WP_009897000.1\|256551_257316_+	2-keto-4-pentenoate hydratase	NA	NA	NA	NA
WP_009896998.1\|257630_258206_+	DUF2760 domain-containing protein	NA	NA	NA	NA
WP_009896996.1\|258202_260050_+	Hsp70 family protein	NA	NA	NA	NA
WP_009896994.1\|260053_262849_+	hsp70 family protein	A0A2H4UU19	Bodo_saltans_virus	5.0e-07	25.8
WP_009896992.1\|262964_264098_-	CapA family protein	S4VS02	Pandoravirus	4.2e-114	55.9
WP_009896990.1\|264206_264641_-	GYD domain-containing protein	NA	NA	NA	NA
WP_009896988.1\|264637_265342_-	hypothetical protein	NA	NA	NA	NA
WP_009896982.1\|265472_265733_-	hypothetical protein	NA	NA	NA	NA
WP_043037490.1\|265790_267224_-	RtcB family protein	A2RQD0	Archaeal_BJ1_virus	5.0e-104	44.8
WP_009896978.1\|267237_267657_-	archease	NA	NA	NA	NA
WP_009896976.1\|267808_269179_+	DUF3326 domain-containing protein	NA	NA	NA	NA
WP_043296784.1\|269419_271834_+	HAD-IC family P-type ATPase	NA	NA	NA	NA
WP_009896973.1\|271989_272613_-	hypothetical protein	NA	NA	NA	NA
WP_025370286.1\|272664_275178_-	cation-translocating P-type ATPase	M1I547	Acanthocystis_turfacea_Chlorella_virus	3.3e-58	29.3
WP_009896969.1\|275236_275716_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_009907668.1\|276571_277381_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_025370285.1\|277461_278892_-	thiamine pyridinylase	NA	NA	NA	NA
WP_009907667.1\|278969_279770_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_009896959.1\|279971_280712_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_009896957.1\|280727_281717_-	thymidylate synthase	NA	NA	NA	NA
WP_009896955.1\|281718_282174_-	nucleoside 2-deoxyribosyltransferase	NA	NA	NA	NA
WP_009896951.1\|282170_282662_-	NUDIX hydrolase	A0A0E3JJF3	Streptomyces_phage	1.7e-14	42.1
WP_043296786.1\|283364_283706_+	hypothetical protein	NA	NA	NA	NA
WP_009896948.1\|283955_284561_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_009896945.1\|284667_286656_-\|protease	ATP-dependent zinc metalloprotease FtsH	E5EQU5	Bathycoccus_sp._RCC1105_virus	1.1e-104	42.9

DBSCAN-SWA_2

1133937 : 1200592

Aeromonas_phage(25.0%)

holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009907965.1\|1133937_1134888_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009907967.1\|1135155_1136100_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_043037783.1\|1136573_1138277_+	peptidase	NA	NA	NA	NA
WP_009907968.1\|1138395_1139622_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_009907969.1\|1139680_1140823_-	porin	NA	NA	NA	NA
WP_025369918.1\|1141050_1142088_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009907971.1\|1142084_1143638_-\|holin	choline-sulfatase	NA	NA	NA	NA
WP_009898036.1\|1143800_1144673_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009898038.1\|1144816_1145692_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_009898039.1\|1145778_1147434_-	APC family permease	NA	NA	NA	NA
WP_009898041.1\|1147613_1148477_-	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_043037781.1\|1148586_1149726_-	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_009898044.1\|1149746_1150988_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_009898046.1\|1151039_1151825_-	drug:proton antiporter	NA	NA	NA	NA
WP_009907972.1\|1151821_1153003_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_009898050.1\|1153007_1154933_-	(Fe-S)-binding protein	NA	NA	NA	NA
WP_009898052.1\|1154935_1156999_-	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_041223509.1\|1157059_1157593_-	4-vinyl reductase	NA	NA	NA	NA
WP_009898055.1\|1157740_1158712_-	membrane dipeptidase	NA	NA	NA	NA
WP_009898057.1\|1158783_1160058_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	6.9e-105	53.4
WP_009898058.1\|1160466_1161492_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_009898059.1\|1161677_1162877_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	1.1e-11	26.8
WP_009900983.1\|1163222_1164239_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_025404203.1\|1164512_1165997_+	glycoside hydrolase 68 family protein	NA	NA	NA	NA
WP_011401416.1\|1166115_1167789_+	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	3.0e-55	31.0
WP_043037916.1\|1168240_1169509_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_025404178.1\|1169703_1171266_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_009896566.1\|1171318_1172284_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_009896564.1\|1172416_1173988_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_041223615.1\|1173984_1175253_-	glycosyltransferase	NA	NA	NA	NA
WP_009896560.1\|1175532_1176432_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_009907980.1\|1177004_1177280_-	hypothetical protein	NA	NA	NA	NA
WP_011401419.1\|1177596_1178022_-	hypothetical protein	NA	NA	NA	NA
WP_009893756.1\|1178044_1178404_-	hypothetical protein	NA	NA	NA	NA
WP_009893757.1\|1178462_1181957_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_009893758.1\|1181953_1183681_-	OmpA family protein	NA	NA	NA	NA
WP_009893759.1\|1183763_1185125_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_009893760.1\|1185121_1185715_-	hypothetical protein	NA	NA	NA	NA
WP_009893761.1\|1185720_1186110_-	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_009893763.1\|1186149_1186866_-	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_009893765.1\|1186868_1187939_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_009893766.1\|1187938_1190155_-	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_025369925.1\|1190158_1192447_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_011401423.1\|1192615_1194907_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_009893771.1\|1194897_1197741_-	type VI secretion system ATPase TssH	A0A2I7REQ1	Vibrio_phage	1.2e-61	27.0
WP_009893772.1\|1197743_1198733_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_043296853.1\|1198729_1200592_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_3

1338706 : 1344772

Burkholderia_virus(28.57%)

integrase

attL 1333566:1333581|attR 1353927:1353942

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1333566:1333581	attL	NA	NA	NA	NA
WP_009893915.1\|1338706_1339279_+\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	1.7e-55	65.9
WP_011401460.1\|1339897_1340395_+	hypothetical protein	NA	NA	NA	NA
WP_011401461.1\|1340823_1341240_-	type II toxin-antitoxin system HicB family antitoxin	A0A0A8JBA5	Ralstonia_phage	1.2e-26	58.9
WP_009893919.1\|1341283_1341463_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	1.2e-18	74.6
WP_011401462.1\|1341742_1342270_+	hypothetical protein	A4JWV5	Burkholderia_virus	6.2e-60	66.1
WP_011401463.1\|1342266_1343001_+	VRR-NUC domain-containing protein	A4JWV4	Burkholderia_virus	3.0e-52	50.9
WP_009893924.1\|1343010_1344126_+	DUF3396 domain-containing protein	E5E3X7	Burkholderia_phage	8.6e-176	80.4
WP_009893925.1\|1344196_1344772_-	recombinase family protein	A0A219Y9V9	Aeromonas_phage	2.3e-23	39.0
1353927:1353942	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1898000 : 1975709

Ralstonia_phage(33.33%)

holin,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009894648.1\|1898000_1900196_+\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA
WP_009894655.1\|1901910_1902927_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_009894657.1\|1902945_1903398_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_009894659.1\|1903933_1904779_+	ABC transporter permease	NA	NA	NA	NA
WP_009907076.1\|1904765_1905620_+	ABC transporter permease	NA	NA	NA	NA
WP_009894662.1\|1905616_1906648_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_009894663.1\|1907196_1908267_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	3.6e-62	43.4
WP_009894664.1\|1908426_1908732_+	H-NS histone family protein	NA	NA	NA	NA
WP_011400785.1\|1909053_1911834_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.8e-89	34.2
WP_025370043.1\|1911847_1914088_+	DUF3274 domain-containing protein	A0A077K801	Ralstonia_phage	4.0e-23	28.9
WP_011400791.1\|1914226_1915762_+	DUF2875 family protein	NA	NA	NA	NA
WP_025370045.1\|1915771_1916035_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_162482707.1\|1916945_1918361_+	DUF3274 domain-containing protein	NA	NA	NA	NA
WP_025404154.1\|1918379_1920038_+	DUF2875 family protein	NA	NA	NA	NA
WP_043295640.1\|1920047_1920311_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_004523721.1\|1920725_1921145_-	YjbQ family protein	NA	NA	NA	NA
WP_009894689.1\|1921164_1921491_-	thioredoxin family protein	NA	NA	NA	NA
WP_004523719.1\|1921962_1922655_+	hypothetical protein	NA	NA	NA	NA
WP_009894695.1\|1923464_1923821_-	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_041223675.1\|1924295_1925438_-	porin	NA	NA	NA	NA
WP_009907082.1\|1926108_1927032_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009894700.1\|1927593_1927917_-	hypothetical protein	NA	NA	NA	NA
WP_127446348.1\|1928105_1928417_-	hypothetical protein	NA	NA	NA	NA
WP_009894702.1\|1928544_1928790_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_009894703.1\|1928922_1930122_-	transcriptional regulator CynR	NA	NA	NA	NA
WP_009894704.1\|1930121_1931555_-	TolC family protein	NA	NA	NA	NA
WP_009894706.1\|1931548_1932448_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_009894707.1\|1932449_1932674_-	DUF1656 domain-containing protein	NA	NA	NA	NA
WP_038707668.1\|1932670_1934737_-	FUSC family protein	NA	NA	NA	NA
WP_025370055.1\|1935745_1937287_-	membrane protein	NA	NA	NA	NA
WP_154660021.1\|1937634_1937991_-	hypothetical protein	NA	NA	NA	NA
WP_043296920.1\|1938835_1940983_+	hypothetical protein	K4F7R4	Cronobacter_phage	7.8e-08	46.1
WP_025370057.1\|1941058_1942510_-	PhoPQ-regulated protein	NA	NA	NA	NA
WP_009907087.1\|1942760_1943159_-	hypothetical protein	NA	NA	NA	NA
WP_011400800.1\|1943940_1944495_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_011400801.1\|1944576_1945302_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_162465482.1\|1945350_1945509_-	hypothetical protein	NA	NA	NA	NA
WP_009894721.1\|1945461_1948158_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_009894722.1\|1948177_1948723_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_009907089.1\|1948753_1949443_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_009894727.1\|1949445_1951122_+	OmpA family protein	NA	NA	NA	NA
WP_009894728.1\|1951465_1952005_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_009894729.1\|1952038_1953538_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_009894730.1\|1953738_1954221_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_011400803.1\|1954348_1954891_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_009894732.1\|1954896_1956246_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_009894733.1\|1956242_1957544_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_009894736.1\|1957558_1961467_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_009894738.1\|1961636_1962206_+	hypothetical protein	NA	NA	NA	NA
WP_043296922.1\|1962306_1964997_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.9e-35	26.0
WP_004523693.1\|1965071_1965341_+	PAAR motif protein	NA	NA	NA	NA
WP_043296924.1\|1965353_1968806_+	RHS repeat protein	NA	NA	NA	NA
WP_038707671.1\|1968698_1970057_-	hypothetical protein	A0A292GJ55	Xanthomonas_phage	2.6e-110	49.7
WP_043296925.1\|1970089_1971118_-	fimbrial protein	NA	NA	NA	NA
WP_009894751.1\|1971173_1972244_-	type VI secretion protein ImpA	NA	NA	NA	NA
WP_009894753.1\|1972262_1973312_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_009894755.1\|1973308_1975189_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_009894757.1\|1975190_1975709_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP004381

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP004381_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP004381_1

1079630-1079753

Orphan

Consensus_repeat	Method
TTAGCGCTTACTCCGATCCCATGCCGTGGTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP004381_1

>merge|NZ_CP004381|1|1079630-1079753|CRISPRCasFinder
TTAGCGCTTACTCCGATCCCATGCCGTGGTTGGCCGAAGTTAGCGCTTCAGCGCTTACTCCGGCCCCGCGGCGGTCGATCGGAGTTAGCGCCTTAGCGCTTACTCCGATCCCATGCCATGGTTG

>NZ_CP004381|1|1|1079630-1079753|CRISPRCasFinder
TTAGCGCTTACTCCGATCCCATGCCGTGGTTG	GCCGAAGTTAGCGCTTCAGCGCTTACTCCGGCCCCGCGGCGGTCGATCGGAGTTAGCGCC
TTAGCGCTTACTCCGATCCCATGCCATGGTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP004381.1\|WP_004195828.1\|1085041_1085311_-\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|180739
NZ_CP004381.1\|WP_009910284.1\|1064433_1065975_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341286
NZ_CP004381.1\|WP_004185283.1\|1084443_1084914_-\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|180240
NZ_CP004381.1\|WP_009906701.1\|1081366_1082242_-\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|235535
NZ_CP004381.1\|WP_025369690.1\|1071792_1074060_-\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NZ_CP004381.1\|WP_004185243.1\|1079892_1081287_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NZ_CP004381.1\|WP_009910285.1\|1067398_1071328_-\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP004381.1\|WP_009910293.1\|1077224_1078955_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236236
NZ_CP004381.1\|WP_009910297.1\|1087152_1088286_-\|citrate-transporter	unknown	unknown	gnl\|CDD\|238537
NZ_CP004381.1\|WP_009906704.1\|1085387_1086239_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235617
NZ_CP004381.1\|WP_009906700.1\|1079174_1079600_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|234796
NZ_CP004381.1\|WP_009906695.1\|1074495_1075590_-\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NZ_CP004381.1\|WP_009906697.1\|1076988_1077183_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004381.1\|WP_009910299.1\|1088292_1089180_-\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP004381.1\|WP_009906688.1\|1066174_1067314_-\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380565
NZ_CP004381.1\|WP_011402667.1\|1075739_1076534_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270231
NZ_CP004381.1\|WP_009906703.1\|1083901_1084441_-\|F0F1-ATP-synthase-subunit-delta	unknown	unknown	gnl\|CDD\|235593
NZ_CP004381.1\|WP_011402668.1\|1086351_1086882_-\|ATP-synthase-subunit-I	unknown	unknown	gnl\|CDD\|377159
NZ_CP004381.1\|WP_011402663.1\|1062643_1064284_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|183199
NZ_CP004381.1\|WP_009906702.1\|1082313_1083855_-\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448

Protein	Function_ID	Function_description	E-value
NZ_CP004381.1\|WP_004195828.1\|1085041_1085311_-\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|180739	PRK06876, PRK06876, F0F1 ATP synthase subunit C; Validated.	4.52385e-24
NZ_CP004381.1\|WP_009910284.1\|1064433_1065975_+\|AMP-binding-protein	gnl\|CDD\|341286	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13. This family contains fatty acyl-CoA synthetases, including Mycobacterium tuberculosis acid-induced operon MymA encoding the fatty acyl-CoA synthetase FadD13 which is essential for virulence and intracellular growth of the pathogen. The fatty acyl-CoA synthetase activates lipids before entering into the metabolic pathways and is also involved in transmembrane lipid transport. However, unlike soluble fatty acyl-CoA synthetases, but like the mammalian integral-membrane very-long-chain acyl-CoA synthetases, FadD13 accepts lipid substrates up to the maximum length of C26, and this is facilitated by an extensive hydrophobic tunnel from the active site to a positively charged patch. Also included is feruloyl-CoA synthetase (Fcs) in Rhodococcus strains where it is involved in biotechnological vanillin production from eugenol and ferulic acid via a non-beta-oxidative pathway.	5.94488e-162
NZ_CP004381.1\|WP_004185283.1\|1084443_1084914_-\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|180240	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated.	5.5546e-56
NZ_CP004381.1\|WP_009906701.1\|1081366_1082242_-\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|235535	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.	6.55675e-157
NZ_CP004381.1\|WP_025369690.1\|1071792_1074060_-\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NZ_CP004381.1\|WP_004185243.1\|1079892_1081287_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NZ_CP004381.1\|WP_009910285.1\|1067398_1071328_-\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP004381.1\|WP_009910293.1\|1077224_1078955_-\|AMP-binding-protein	gnl\|CDD\|236236	PRK08315, PRK08315, AMP-binding domain protein; Validated.	0
NZ_CP004381.1\|WP_009910297.1\|1087152_1088286_-\|citrate-transporter	gnl\|CDD\|238537	cd01117, YbiR_permease, Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.	4.83084e-60
NZ_CP004381.1\|WP_009906704.1\|1085387_1086239_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|235617	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.	8.73438e-72
NZ_CP004381.1\|WP_009906700.1\|1079174_1079600_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|234796	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated.	3.94743e-62
NZ_CP004381.1\|WP_009906695.1\|1074495_1075590_-\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NZ_CP004381.1\|WP_009910299.1\|1088292_1089180_-\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	5.52547e-78
NZ_CP004381.1\|WP_009906688.1\|1066174_1067314_-\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380565	cd06342, PBP1_ABC_LIVBP-like, type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.	1.78326e-142
NZ_CP004381.1\|WP_011402667.1\|1075739_1076534_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270231	cd01069, PBP2_PheC, Cyclohexadienyl dehydratase, a member of the type 2 periplasmic binding fold protein superfamily. This subfamily includes cyclohexadienyl dehydratase PheC. These proteins catalyze the decarboxylation of prephenate to phenylpyruvate in the alternative phenylalanine biosynthesis pathway in some proteobacteria and archaea. The PheC proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Since they the PheC proteins are so similar to periplasmic binding proteins, (PBP), it is evolutionarily plausible that several pre-existing PBP proteins might have been recruited to perform the enzymatic function.	8.83875e-125
NZ_CP004381.1\|WP_009906703.1\|1083901_1084441_-\|F0F1-ATP-synthase-subunit-delta	gnl\|CDD\|235593	PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated.	2.09611e-64
NZ_CP004381.1\|WP_011402668.1\|1086351_1086882_-\|ATP-synthase-subunit-I	gnl\|CDD\|377159	pfam03899, ATP-synt_I, ATP synthase I chain. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI. AtpI is a Ca2+/Mg2+ transporter.	4.09839e-12
NZ_CP004381.1\|WP_011402663.1\|1062643_1064284_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|183199	PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional.	4.26276e-170
NZ_CP004381.1\|WP_009906702.1\|1082313_1083855_-\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0

>NZ_CP004381.1|WP_009906700.1|1079174_1079600_-|F0F1-ATP-synthase-subunit-epsilon
MATIKVDVVSAEEQIFSGLAKFVALPGEAGELGILPGHTPLITRIRPGAVRIEAESGDEEFVFVAGGILEVQPGAVTVLADTAIRGKDLDAAKAEEARKRAEETLQNAKSDIDLAKAQSELATAMAQLEAIQRLAKIRGRH
>NZ_CP004381.1|WP_009910293.1|1077224_1078955_-|AMP-binding-protein
MAADSGVGALIAPQRGLSYVRGPADVPLSEATIGRFLLDTVARFPDRAAVVFREQGVRWTWREFADEVDVLATALIELGVARGDRVGIWSPNRAEWLLTQFATARIGAVLVNVNPAYRLAELEYALNKVGCKLLIAAERFKTSAYIEMISEIAPELATTPADGMLHAARVPSLRTVVTMGAAAPAGMLSFADVLARGRAALDPARLDAIGAALDCRDPINIQFTSGTTGSPKGATLTHHNVVNNACSIASVMRLTEVDAMCIPVPLYHCFGMVLSVLACVSVGAKMVFPGEAFEPGATLAAVSDERCTALQGVPTMFIAELDHPDFDRFDLSTLRTGIMAGSPCPIETMKRVVAKMHMSEVTIAYGMTETSPVSFQSSTTDSLEKRTTTVGRIQPHLEAKIVDATGAIVPVGETGELCTRGYSVMLGYWDDEARTREAVVDGWMRTGDLATLDEEGFCNIVGRLKDMLIRGGENVYPREIEEFLFRHPKIQSVQVFGVPDPKYGEEVCAWIVLRAGETMTDDELREFCRGQIAHYKVPRYVRFVDELPMTVTGKVQKFVMRERMIDELGLSVQKTA
>NZ_CP004381.1|WP_009906697.1|1076988_1077183_-|hypothetical-protein
MSPLKTTRYGVSARRPKMERIGVGRRRLQQGCPCEGIRYETDGPVIRACVRSHAAHETASVLKP
>NZ_CP004381.1|WP_011402667.1|1075739_1076534_+|transporter-substrate-binding-domain-containing-protein
MKMKITLLALACCAGFAHAQAAREHAAPAMPASRLDDVLARGTLRVCTTGDYKPYTYRREDGAFEGIDIDMAASLAKSLGVKTAFVKTTWPTLTDDFVAKCDIAVGGISTTLERQKHVFFTQPYVTDGKTPIVRCADVERYQTIAQIDQPQTRVIANPGGTNERFAKQHFTHARITVFPDNVTIFKQILAGNADVMVTDASETLLQQKLNPGLCSVHPDKPFQFGEKAYMVPRGDVVFQQYVDQWLHLARETGELQAISDKWLK
>NZ_CP004381.1|WP_009906695.1|1074495_1075590_-|uroporphyrinogen-decarboxylase
MAQTLINDTFLRALLREPTDYTPIWLMRQAGRYLPEYNATRARAGSFLGLAKHPDYATEVTLQPLERFPLDAAILFSDILTIPDAMGLGLDFAAGEGPKFAHPVRTEADVAKLAVPDIGATLGYVTDAVREIRRALTDGEGRQRVPLIGFSGSPWTLACYMVEGGGSDDFRTVKSMAYARPDLMHRILDVNAQAVAAYLNAQIEAGAQAVMIFDTWGGALADGAYQRFSLDYIRRVVAQLKREHDGARVPAIAFTKGGGLWLEDLAATGVDAVGLDWTVNLGRARERVAGRVALQGNLDPTILFAPPEAIRAEARAVLDSYGNHPGHVFNLGHGISQFTPPEHVAELVDEVHRHSRAIRSGTGS
>NZ_CP004381.1|WP_025369690.1|1071792_1074060_-|primosomal-protein-N'
MADAFVRVALDHPLPTLFDYRYRGDVPAAPGMLVQVPFGRRSAVGLVCEVTAHTDVPANKLKAVDAVCAELPPLSRRWLDLVAFAADYYQRGLGEVALPALPQALRDVPRWGRLLAPELRYRLLDAGRAALPAALPARGAALRRLAQALADAPALSLAEVRALHPKAVAVLDEWQAQGWAACDEIAITHAHAQFVGNPAPIAGWRAVASRPQLTDQQADALDAIASADGFVPFLLHGVTGSGKTEVYLRALAALLERRSDAQALVLVPEINLTPQFEAAFRARFAATLPADAIVTLHSGLAEGERARHWLAAHTGRARIVLGTRLAVLASLPALAMIVVDEEHEPAYKQQEGLRYSARDLAVWRAKQCAIPVVLGSATPSLETWWQAEQGRYRRLTLTKRAVADAALPTVRLVDLEEERRRGRGSIGGLSGPLVAALKARLERGEQSLVFLNRRGYAPALACDACGWVAGCPRCSAYVVMHKPEHAVRCHHCGWEARIPRSCPECGNVDIAPLGRGTQRVEETLALAVPGARVLRIDADSTRRKGSAQALFSDVHAGEVDILVGTQMIAKGHDFQRVSLVGVLNADTALFSHDFRASERLFAQLMQVSGRAGRAGLPGEVLIQTRYPRHALYHALARQDYVGFAGATLGERRDAHLPPFVYQALLRAEGRTLEAALVFLQQAADAFSALPGAERVTVYDAVPMTIVKVANVHRAQLLIESASRAALQHTLRAWQPLLRELKGVLRWSVEVDPLDI
>NZ_CP004381.1|WP_009910285.1|1067398_1071328_-|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MASTTLGVKVDDLLRARLKDAASRLERTPHWLIKQAIFAYLERIEHGQLPPELSGHTGMADLSDGHADGDEDGAPHPFLEFAQNVQPQSVLRAAITAAYRRPEPECVPFLIGEARLPASLAPDVQSMAAGLVEALREKSSGGGVEGLIHEFSLSSQEGVALMCLAEALLRIPDRATRDALIRDKISKGDWRSHVGHAPSLFVNAATWGLMITGKLVTTNSEAGLSSALTRLIGKGGEPLIRKGVDMAMRLMGEQFVTGETISEALANSRKYEARGFRYSYDMLGEAATTEEDALRYYASYEQAIHAIGKAAGGRGIYEGPGISIKLSALHARYSRSQQERTMNELLPRVRSLALLARRYDIGLNIDAEEADRLELSLDLLEALCFDSELAGWNGIGFVVQAYQKRCPFVIDYLVDLARRSRHRLMIRLVKGAYWDSEVKRAQVDGLEGYPVYTRKIYTDVSYLACAKKLLAAPDAVYPQFATHNAYTLAAIYHLAGQNYYPGQYEFQCLHGMGEPLYEEVTGRDKLNRPCRVYAPVGTHETLLAYLVRRLLENGANTSFVNRIADKTVSVKELVADPVEEAAKVVPLGAPHAKIALPRELYGASRVNSMGLDLSNEHRLASLSSALLASAHHPWRAAPMLADDALAHAEPRDVRNPADLRDVVGTVSEATPEEVGAALAHAVAAAPIWQATPVDARADCLARAADLLEAQMHTLMGLIVREAGKSLPNAIAEIREAVDFLRYYSAQIRDEFSNDTHRPLGPVVCISPWNFPLAIFMGQVAAALAAGNTVLAKPAEQTPLIAAQAVRLLRDAGVPAGAVQLLPGNGETVGAALVADPRTRAVMFTGSTEVARLINKTLSSRLDPDGKPIPLIAETGGQNAMIVDSSALAEQVVADVLQSSFDSAGQRCSALRVLCLQDDVADRTLTMLKGAMRELALGNPDRLSVDVGPVIDADAKRTIDAHIAAMKDKGHAVTQLEMPEACAQGTFVPPTIIEIGNVDELKREVFGPVLHVVRYRRSGLDKLLEQIRATGYGLTLGIHTRIDETIAHVISRAHVGNIYVNRNVIGAVVGVQPFGGEGLSGTGPKAGGALYLQRLLATRPAGLPRSLEASLVADAPQEGETRDNPSAALTALRDWLIEQREPALAARCDGYLSHVLAGATAVLSGPTGERNTYTLGARGTVLCIAATASGARAQFAAVLATGNRALFASAAGEALAAALPAPLKAHAAVRKQADAAFDAVLFEGDSDELLALVKEVAQRPGPIVSVQGVAAGAFENGGDEDYALERLLTERSVSVNTAAAGGNANLMTIG
>NZ_CP004381.1|WP_009906688.1|1066174_1067314_-|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein
MQHTMKKLAGATFVAVMSLAGTAHADDVKIGFAAPMTGAQAHYGKDMQNGIVLAIEDINATKPVIGGKPVKFVLDTQDDQADPRTGTTVAQKLVDDGIKGMLGHFNSGTTIPASRIYANAGIPQIAMATAPEYTQQGYKTTFRMMTSDTQQGSVAGAFAVKDLGMKKIAIVDDRTAYGQGLADQFEKAAKAAGATIVDREFTNDKAVDFKAILTKLKAAKPDLVYYGGADSQAAPMAKQMKSLGVTAPLMGGEMMHTPTFLKIAGSAAEGSIASLAGLPLAEMPGGKTYEDKYKKRFGEDVQTYSPYAYDGAMAMFNAMKKANSTDPAKYLPLLAKTDMAGVTSTHIAYDAKGDLKNGGITMYKVEKGEWKPLKSIGGK
>NZ_CP004381.1|WP_009910284.1|1064433_1065975_+|AMP-binding-protein
MNLIAALERAARATPDKPFLRDDGATITYRQMQQRSRRAAEVLASLGIAPGERVAAMCLNTPAFFDLLLGAWRIGAVVVPVNHKLQAPEVDHILRHSASRAVLFDAALAPVLAGVGHGALRLVTEGDAAGAAPFDRLVADAPGIASGTPDDAALAEILYTSGTTGRPKGCMHSHRTVALAAATSALALSMTERERTLMAMPIWHASPLNNWFGGTLYVGGTVVLMREYHPLRFLQTVEAEQATLYFGAPVSYTLPLDTIADFASFDLTSVRAWLYGGGPIGAALARRLMRAYRSEAFYQVYGMTETGPAGTVLHPFEQTMKAGSIGRQGTPGVDVRVVTAVGDVARPGEIGEIRLRADSMMLGYLDDPDATRAAFDDDGWHRSGDVARVDDDGYLFVVDRIKDMIVTGGENVYSKEVEDVLTEHPAVAEAAVIGRAHPQWGETVIAHVVLRGAGSADRAPDGERAVDADALRAFCATRLAAYKIPREYVFAERLPRTPTGKLQKYLLRARGGA
>NZ_CP004381.1|WP_011402663.1|1062643_1064284_+|acyl-CoA-dehydrogenase
MAWSTHEVSNQFDELTDYNLFATDPALGEALERAGASWAAPRLDAFGARLGARDTAQQAEDANRHVPELNAFDRRGRRIDRVDFHPSWHALLGLYREQGLISLAFRESRAGRWAANAAGFYLHGQIEAGTLCPATMTQASIPVLQKEPALWAQLKDKLYSDVHDPRDAPIDTKQSIMIGMGMTEKQGGSDVRANTTLAVPVGVGGRGGEHLLRGHKWFFSAPMCDAHLVVARTESGGPSCFYVPRWRPDGTKNAVRIQRLKNKVGNRSNSSSEIELDDAWGVMLGEEGRGIPTIIEMATYTRLNCVLGSAAILRQGLVQAIAYARQRHAFGRALAEQPLMRAVLADLALESEAALALAMRLAQAFERGEAAWTRIVTPAAKFWVCKRAVEAAGEVMEVFGGNGYVDDGPIARLFREAPVNSIWEGSGNVMCLDVMRAISREPDAAHALADELRALGGHDARIRAELDALRALLGTPPDALEALGRVLAQRIALVAQACLLIDAAPATVSEGFIATRFGEPAWGRVTGALDARRVDVAALLQRAYAA
>NZ_CP004381.1|WP_004185243.1|1079892_1081287_-|F0F1-ATP-synthase-subunit-beta
MSTAALVEGKIVQCIGAVIDVEFPRESMPKIYDALILEGSELTLEVQQQLGDGVVRTICLGASDGLRRGVVVKNTGNPISVPVGKPTLGRIMDVLGRPIDEAGPIESENKRSIHQKAPAFDELSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELINNIAKEHGGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGLDVLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKKGSITSVQAVYVPADDLTDPSPATTFGHLDATVVLSRDIASLGIYPAVDPLDSTSRQIDPNVIGEEHYSITRRVQQTLQRYKELRDIIAILGMDELSPEDKLSVARARKIQRFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMIVDGECDHLPEQAFYMVGTIDEAFEKAKKIQ
>NZ_CP004381.1|WP_009906701.1|1081366_1082242_-|F0F1-ATP-synthase-subunit-gamma
MAGMKEIRGKIKSVQNTRKITKAMEMVAASKMRRAQERMRAARPYAEKVRAIAAHMSRANPEYRHPFMVANEGVKTAGMILVTTDKGLCGGLNTNVLRASLQKFKELEEKGQKVEATAIGGKGLGFLNRFGAKVISQVVHLGDTPHLDKLIGAVKTQLDLYSEGRLSAVYLAYTRFVNTMKQETVIEQLLPLSSEHFDANDGTPATSWDYIYEPDAQAVVDELLVRYVEALVYQAVAENMASEQSARMVAMKAASDNAKTVISELQLSYNKSRQAAITKELSEIVGGAAAV
>NZ_CP004381.1|WP_009906702.1|1082313_1083855_-|F0F1-ATP-synthase-subunit-alpha
MQLNPSEISELIKSRIQGLEASADVRNQGTVISVTDGIVRIHGLSDVMQGEMLEFPGNTFGLALNLERDSVGAVILGEYEHISEGDIVKTTGRILEVPVGPELVGRVVDALGNPIDGKGPVNAKLTDAIEKIAPGVIWRKSVSQPVQTGLKSIDSMVPIGRGQRELIIGDRQCGKTAVAIDTIINQKGKDLICIYVAIGQKASSIMNVVRKLEETGALEYTIVVAASASESAAMQYLAPYAGCTMGEYFRDRGQDALIIYDDLTKQAWAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAARVSEEYVEKFTNGEVKGKSGSLTALPVIETQAGDVTAFVPTNVISITDGQIFLETDLFNAGIRPAINAGVSVSRVGGAAQTKVVKKLSGGIRTDLAQYRELAAFAQFASDLDEATRKQLERGRRVTELLKQPQYQPLQVWELAVSLFSANNGYLDDLDVKDVLPFEKGLREYLKTSHADLIKRIEDTKDLSKDDESALHAAIKDFKKSGAY
>NZ_CP004381.1|WP_009906703.1|1083901_1084441_-|F0F1-ATP-synthase-subunit-delta
MAELATIARPYAEALFRVAEGGDISAWSTLVQELAQVAQLPEVLSVASSPKVSRAQVAELLLATLKSPLASGAQAKNFVQMLVDNHRIALLPEIAVQFEALKNAREGAADVQIVSAFPLEGAQLAELVTSLERKFKRKLKPAVEVDSSLIGGVRVTVGDEVLDTSVRARLAGMQAALTA
>NZ_CP004381.1|WP_004185283.1|1084443_1084914_-|F0F1-ATP-synthase-subunit-B
MNLNATLFAQMVVFLVLAWFTMKFVWPPLINALDERSKKIADGLAAAEKGKAELEAAHKRVDQELAQARNDGQQRIADAEKRALAVADEIKTNAQAEAARIIAQAKAEAEQQIVKARETLRGEVAALAVKGAEQILKREVDQTAHAELLNQLKAEL
>NZ_CP004381.1|WP_004195828.1|1085041_1085311_-|F0F1-ATP-synthase-subunit-C
MQAFIANIQGLTAIGIGIIIGLGAIGACIGIALMGGKYIEACARQPELINPLQTKMFLLAGLIDAAFLIGVGVAMLFAFANPLLSKLAG
>NZ_CP004381.1|WP_009906704.1|1085387_1086239_-|F0F1-ATP-synthase-subunit-A
MAASEGTRAPDPSEYIAHHLQNFSTSHQTSIFDIHVWNLDTLFWSIVCGLITILLLRLAARKATPGVPGRFQCAIEMLVEMVEDQSKAIVHGNRAFIAPLALTVFVWVALMNSLDFLPVDLPGRVIGWLGLSGVISHHRIVPTADLNGTLGIALGVFVLMLYYSVKIKGVGGFAHELVSAPFGAHPLLWIPNLALNIVEYVAKTVSLGMRLFGNMYAGELVFLLIALLGSMWSFGGDATFLGFVGHVIAGSVWAIFHILIVLLQAFIFMMLTLVYLGQAHDAH
>NZ_CP004381.1|WP_011402668.1|1086351_1086882_-|ATP-synthase-subunit-I
MADRAPDKRHGDRRAGQRTVSGGVGRHESAADDWDAEQQEEDVVPLTRAEAQALFGPEVSQPSRVTPYRVVVAQMVLSLVATLAWWLFSKSPGAAAQSAFLGGAIGWVPSALFVARLRLSGAGTVMGWVAGEALKLGVTIAMFAAVAFGYPGVHWVPLLVTYLVVLKTYWIALAWR
>NZ_CP004381.1|WP_009910297.1|1087152_1088286_-|citrate-transporter
MSNSVVGRATARIIAFVRHEPVLSILVAALIALQLVRPQSAGALVRLVDWQTVATLAGLLMLTKALELSGFLMWLAHRIVHRVRSERALAALLVVFAASLSVWLTNDVALFVVIPLVLSLRELTPLPFKRLVIYIALAVNAGAIATPLGNPQNLFLWQLSGISFGRFVIALGPLALVLMALLLAMTAIAFDGRPLDLSKDHAERPVDRAHAFATVAMFAGFVLLADAHHALAGVLAVAAIFLIVRRDAVLKIDWLLLLIFVLMFIVLRSAALLPAVHRTIADIGLDTPLRAYAAGALLSQAISNVPAAILLSEFTRDWRALAFGVSVGGFGIAIGSLANLIAIRLSRARGMWLPFHLVSIPFGIASAVLGALLLHYF
>NZ_CP004381.1|WP_009910299.1|1088292_1089180_-|ParB/RepB/Spo0J-family-partition-protein
MNAVAKKKGLGRGLEALLGGSADITEAVKIEGAPNVLALGKLQAGKYQPRTRMDEGSLQELAASIRAQGVMQPILVRPISSDKFEIIAGERRFRAARLAGLEEVPVLVKDVSDQAAAAMALIENIQREDLNPLEEAHGIQRLLDEFGFTHEQAAESVGRSRSAVSNLLRLLNLAMPVQTMLLAGDLDMGHARALLAVDAATQITLAHQVVNKRMSVRETEKLVTHTTKSEPAVKARAKDDGGRDTRRLEEELSDLLASNVKIKVGRRGRGQLTIDFGDLDALEGILARLRGNVAA

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Crispr_ID: NZ_CP004381_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP004381_2

1784660-1784751

Orphan

Consensus_repeat	Method
TGTCGCTCGATGCGCTCGAGCGGCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP004381_2

>merge|NZ_CP004381|2|1784660-1784751|CRISPRCasFinder
TGTCGCTCGATGCGCTCGAGCGGCTCGTCGGCGTGAATCTCGCGCGGCTGCGCGCGGAACGCCAGCTGTCGCTCGATGCGCTCGCGCGGCTC

>NZ_CP004381|2|2|1784660-1784751|CRISPRCasFinder
TGTCGCTCGATGCGCTCGAGCGGCTC	GTCGGCGTGAATCTCGCGCGGCTGCGCGCGGAACGCCAGC
TGTCGCTCGATGCGCTCGCGCGGCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP004381.1\|WP_038712953.1\|1782205_1783138_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP004381.1\|WP_009892877.1\|1788396_1789899_-\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|234594
NZ_CP004381.1\|WP_009908482.1\|1786450_1787137_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319828
NZ_CP004381.1\|WP_009892862.1\|1795657_1796491_+\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|153097
NZ_CP004381.1\|WP_043296249.1\|1792669_1793449_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP004381.1\|WP_009892889.1\|1778174_1778972_-\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|237573
NZ_CP004381.1\|WP_009892896.1\|1773115_1774123_-\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
NZ_CP004381.1\|WP_009892881.1\|1785657_1786380_+\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	unknown	unknown	gnl\|CDD\|235119
NZ_CP004381.1\|WP_009892886.1\|1780653_1782027_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673
NZ_CP004381.1\|WP_009892878.1\|1787566_1788283_-\|aquaporin-family-protein	unknown	unknown	gnl\|CDD\|223653
NZ_CP004381.1\|WP_009892887.1\|1779553_1780630_-\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|376820
NZ_CP004381.1\|WP_009892890.1\|1777503_1778136_-\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|226226
NZ_CP004381.1\|WP_009892894.1\|1774418_1776134_-\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|234721
NZ_CP004381.1\|WP_004189182.1\|1792142_1792340_-\|phage-tail-assembly-chaperone	unknown	unknown	unknown
NZ_CP004381.1\|WP_009892876.1\|1790004_1791537_-\|glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237027
NZ_CP004381.1\|WP_009892870.1\|1791704_1792076_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004381.1\|WP_009892898.1\|1770999_1773099_-\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NZ_CP004381.1\|WP_009892892.1\|1776175_1777063_-\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|226910
NZ_CP004381.1\|WP_009892883.1\|1783283_1784456_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP004381.1\|WP_025404068.1\|1793687_1795352_+\|gamma-glutamyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223482

Protein	Function_ID	Function_description	E-value
NZ_CP004381.1\|WP_038712953.1\|1782205_1783138_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.8477e-70
NZ_CP004381.1\|WP_009892877.1\|1788396_1789899_-\|glycerol-kinase-GlpK	gnl\|CDD\|234594	PRK00047, glpK, glycerol kinase GlpK.	0
NZ_CP004381.1\|WP_009908482.1\|1786450_1787137_-\|HAD-family-hydrolase	gnl\|CDD\|319828	cd07526, HAD_BPGM_like, subfamily of beta-phosphoglucomutase-like family, similar to Escherichia coli 6-phosphogluconate phosphatase YieH. This subfamily includes Escherichia coli YieH/HAD3 an 6-phosphogluconate phosphatase, which can hydrolyzed purines and pyrimidines as secondary substrates. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate, and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.97075e-48
NZ_CP004381.1\|WP_009892862.1\|1795657_1796491_+\|ferritin-like-domain-containing-protein	gnl\|CDD\|153097	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyubiquinone hydroxylases (DMQH), DNA protecting proteins (DPS), and ubiquinol oxidases (AOX), and the aerobic cyclase system, Fe-containing subunit (ACSF).	1.52061e-10
NZ_CP004381.1\|WP_043296249.1\|1792669_1793449_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	1.30424e-98
NZ_CP004381.1\|WP_009892889.1\|1778174_1778972_-\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|237573	PRK13963, PRK13963, rRNA maturation RNase YbeY.	2.71354e-154
NZ_CP004381.1\|WP_009892896.1\|1773115_1774123_-\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP004381.1\|WP_009892881.1\|1785657_1786380_+\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	gnl\|CDD\|235119	PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional.	3.44814e-122
NZ_CP004381.1\|WP_009892886.1\|1780653_1782027_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NZ_CP004381.1\|WP_009892878.1\|1787566_1788283_-\|aquaporin-family-protein	gnl\|CDD\|223653	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism].	1.57915e-71
NZ_CP004381.1\|WP_009892887.1\|1779553_1780630_-\|PhoH-family-protein	gnl\|CDD\|376820	pfam02562, PhoH, PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.	2.73217e-140
NZ_CP004381.1\|WP_009892890.1\|1777503_1778136_-\|gamma-glutamylcyclotransferase	gnl\|CDD\|226226	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism].	1.09506e-57
NZ_CP004381.1\|WP_009892894.1\|1774418_1776134_-\|apolipoprotein-N-acyltransferase	gnl\|CDD\|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	0
NZ_CP004381.1\|WP_009892876.1\|1790004_1791537_-\|glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|237027	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed.	0
NZ_CP004381.1\|WP_009892898.1\|1770999_1773099_-\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NZ_CP004381.1\|WP_009892892.1\|1776175_1777063_-\|HlyC/CorC-family-transporter	gnl\|CDD\|226910	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism].	9.20756e-141
NZ_CP004381.1\|WP_009892883.1\|1783283_1784456_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	3.20259e-99
NZ_CP004381.1\|WP_025404068.1\|1793687_1795352_+\|gamma-glutamyltransferase-family-protein	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0

>NZ_CP004381.1|WP_009892883.1|1783283_1784456_+|MFS-transporter
MPLPLLALAISAFAIGTTEFVIMGLLPDVARDLAVTLPSAGLLVSGYALGVAAGAPLLAVLTSRMPRKAALQLLMAIFIAGNVLCALAQSYGMLMFARVVTSFAHGSFFGIGAVVAASLVSVDKRASAIALMFTGLTLANVLGVPFGTFVGQTLGWRATFWIVAALGVASLAGVAALVPKPRDAGRAALGRELRVLKEPQVWLALAMTVLGFGGVFVVFTYIAPILEDVTGFSPHAVSLVLVLFGVGLTIGNAIGGRLADRALMPSLLAILVALIAVMAVFAKTSHLPAAAAITVFVWGIAAFATVPPLQSRVVEKAAHAPNLASTLNIGAFNVGNAGGAWLGGVALSHGAPLDALPWVAAVVTLAALAVTVLAARLDTRVSPGAAAAAQ
>NZ_CP004381.1|WP_038712953.1|1782205_1783138_-|LysR-family-transcriptional-regulator
MDRLGDIRLFVDAAELGSLSAAGRKLNLTPAAASARLAKLEAQVSTRLFERSTRRLRLTDEGRLYLNCCRQALQALDDADAMLQEGRNVVSGKVRLSSTADFGRNQLLDWLDEFNARYPDVTFSVTASDSSSNLWQDEIDLAIRFAAPPDGALIARPLAANRRVLCASPAFVDKYGTPKDPHDLARFPCNVITVASGPINVWRFTRGGDTQTYTVPLANAHETNDGGFTREWTIRGHGIALKSIWDVARDVRAGRLKVLLPEWRHQDAPLHAIHHSKRYMAPRVRVLLDFLAERFAQEEKALEDLLNACR
>NZ_CP004381.1|WP_009892886.1|1780653_1782027_-|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDSPEDADIILFNTCSVREKAQEKVFSDLGRVRELKEAKPDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDARRESGRAQVDITFPEIEKFDHLPPARVEGPSAFVSIMEGCSKYCSYCVVPYTRGDEVSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTAGAHEIADFATLIEYVADIPGIERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSLIRKLRAIRPNLSLSTDIIVGFPGETEADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANLADDTPREVKLERLQHLQATIEENVARISQSMLGKVERILVEGPSRKDPNELAGRTENNRVVNFPAPLTAHARLIGQMIDVKINHAYPHSLRGELVLAHDDASAATH
>NZ_CP004381.1|WP_009892887.1|1779553_1780630_-|PhoH-family-protein
MKTAQALEFTAPRDDNARLANLCGPLDENLRQIEQALDVTLSRRGHRIAIRGRGARIALAALEDFYNRARDPLSVDDIQLALVEARHPGNPRRNGNGNGDGSGQPEVDVRFRGDPDHPFDEPVVRIGDEPHADEAAPKLYTRRADLRGRTPAQREYLKQILSHDVTFGVGPAGTGKTYLAVACAVDALERDQVKRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDKTAKMFERQMIEIAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVVTGDTSQVDLPRGHKSGLVEAQQVLGGVRGIALTRFTSADVVRHPLVARIVEAYDEFHAQHKDE
>NZ_CP004381.1|WP_009892889.1|1778174_1778972_-|rRNA-maturation-RNase-YbeY
MKSSRSSKSARAEAAQPEFPRLSLFDAKGKVKTVEAQALRVDFADGRSLMFDLSGSSGDAAVAIVAQHTDPSLRATIALRPEHYDSVTVEAGADENPDFAHDATDDAGEDAPNREPELDLAVQYGDEIGDAQRRSLPKRKVIAEWLEPAIFSDAQFTVRFVGADEGRTLNHSYRHKDYATNVLTFAYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAHLLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR
>NZ_CP004381.1|WP_009892890.1|1777503_1778136_-|gamma-glutamylcyclotransferase
MSRPAPARCPYPPSLGEARYLSDDELAASLDATLAGWDRTSDLWLFGYGSLIWNPGMPAVEALRGKVHGYHRGLYLWSRVNRGTPEQPGLVLALDRGGSCTGLAFRLAGGTAMPHLEALWRREMAMGSYRPAWLPCALAGGERVSALAFVMRRDVPTYTGKLTDDVVKAVFGCASGRYGTTLDYVSRTVAALRDSGMPDRALEALLARCR
>NZ_CP004381.1|WP_009892892.1|1776175_1777063_-|HlyC/CorC-family-transporter
MNDSYPSRKSSDKPHEKRSLLERLTDFISPEPDSRAELLEILQDAHERNLIDADSLSMIEGVFQVSDLCARDIMVPRAQMDALNIADKPEDFIPFVLEKAHSRYPVYEDNRDNVIGVLLAKDLLRFYAEEEFDVRGMLRPAVFIPESKRLNVLLHDFRVNRNHLAIVVDEYGGVAGLITIEDVLEQIVGDIEDEYDFDEEAGNIIAAPDGRYRVRALTEIEQFNETFGTDFSDEEVDTIGGLITHHFGRVPHRGEKVRLGDLLFEIQRGDARQIHVLLVRRAPLAGRRSGSAGED
>NZ_CP004381.1|WP_009892894.1|1774418_1776134_-|apolipoprotein-N-acyltransferase
MAEPISTRSQSSVSPTAAGRALPIWHYPSALLAGAANTLTFAPTPHGGWLQLAVFAWLFAQLTRTTSWKHAAATGGAFGFGNFISGIWWLYISMHVYGEMAAPLAGGALVLFCLYLSIYPAFSAGLWSFCAGHARNGKAADPRPFSPTWHGAFAFASAWAVGEWLRGTVLTGFPWLASGYAQVDGPLAGYASIVGVYGIGWVLALIAALGVQAIARAREGSNGLGGDRNNGGGNGRTDAPAGAVPLALRSPRVAAPALTAAALVALGPLLALVPWTVPANAPLTVRLLQGNVKQDIKFEEAGIQAAIAMYQKMITEKPADLVVTPETAIAVLIQELPEPFARAVRNFSDATDTAVLFGAVGGTVTNDGRIVDYTNSLYGVTPHSRDIYRYDKHHLVPFGEFIPWGFHWFVDLMKMPLGDFARGAPVQQPFIVRNQPVMADVCYEDIFGEEIAATIRDNPVSPGVLVNVTNLAWFGDTIALDQHLQIARMRSLETGRPMLRATNTGMTAAIDAHGRVIGRLKPFTIGSLDVRIEGTAGRTPYVTSGNATVLAMSLLLLAFGFAFGPRLRRRS
>NZ_CP004381.1|WP_009892896.1|1773115_1774123_-|glycine--tRNA-ligase-subunit-alpha
MLTFQQIILTLQSYWDRQGCALLQPIDMEVGAGTSHVHTFLRAIGPEPWRAAYVQPSRRPKDGRYGENPNRLQHYYQYQVVLKPAPENILDLYLGSLAALGFDLKQNDVRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLDCKPVLGEITYGLERLAMYLQKVENVYDLIWTEWEEQGPNGPEIRRLTYGDVYHQNEVEQSTYNFEQANVELLFTFFNSYEAEAKRMIEAQLALPAYELVLKAGHTFNLLDARGAISVTERAAYIGRIRALSRLVAQAYYDSREKLGFPMIGNPVPGVPGLTTDAQEAAQPAWAPPLKAERKIDQD
>NZ_CP004381.1|WP_009892898.1|1770999_1773099_-|glycine--tRNA-ligase-subunit-beta
MTQNHSASLLVELLTEELPPKALARLSDAFAEGIAQRLAARDLIEGELAFERYATPRRLAVVVQNVRAVAPERQVREKVLPVSVALDAQGKPTAPLAKKLAALGHPNLSIADLERAHDGKAEAFFVNYASPGATLAEGLQAALDETLAKLPIPKVMTYQRPDGTDVQFVRPVHRLSALHDDRIVPVCAFGIDAGDTTLGHRFLSDGLVAIQHANAYADTLRDKGRVLAHFAGRKEAIRAQLEANAGGDQVVMPEALLDEVTSLVEWPVVYPCRFEDEFLQVPQECLILTMQTNQKYFALTDAAGKLRSRFLIVSNIETKTPDEIVEGNERVVRPRLADAKFFFEQDKKKPLADRVPLLANVVYHNKLGSQLARIERLETLAGEIAPAIGADATVAIRAARLAKADLLTDMVGEFPELQGTMGTYYARHDGEAEDVAIACSEHYQPRFSGDALPTTPVSTAVALADKLETIVGIWGIGLAPTGEKDPFALRRHALGVLRLLLEKQLPLDLVWLLRTTYERFAAVPDVAESTDAIHAFFVERLRGLLRERGYTAGEVDAVLSLNPTRLDDIVARLDAVREFTRLAEAEALAAANKRISNILKKSESGANGAVQPALFVEAAEKALAEQLAEVTPRVQSQLEARAYTGALSALAALRAPVDAFFDGVMVNAEDPALRANRLALLSALHQQMNCVADISKLAA
>NZ_CP004381.1|WP_009892881.1|1785657_1786380_+|3,4-dihydroxy-2-butanone-4-phosphate-synthase
MSFPLPSKSAPADAFSDLPLLDVEPVPPRIAAALAALREGRAVVLQDDHDRENEADLIVAAERLTDETMALLIRECSGIVCLCLTDEKVRALALPPMAQLNESKNGTAFTVSIEARAGVTTGVSAADRVTTIRAAIADDAQPHDIVRPGHVFPLRAAPGGVLARRGHTEGTVDLAILAGLKPAGVLCELMNPDGTMTRGADVERFAAQHGLPMLTIAELVEFRERLASLRERDACCEGVA
>NZ_CP004381.1|WP_009908482.1|1786450_1787137_-|HAD-family-hydrolase
MLDHLICDCDGVLVDSEVIADRVLFDTLSAAFPAIDFTADAKAAFGQQTSRFLADLEARHGIAMPEDFLDTIEHNIETGLAQWLAPIAGVRDALTKIALPAAVVSNSRLARVRNSLKRAALTDVFGERVFSAEQVARPKPYPDVYLHAARTLGVEPARCIVVEDSVSGLNAARAAGMKTIAFVGASHIPGGYEDALRKMGITRIMRSMDELPALVSAGMRGEFGDVQS
>NZ_CP004381.1|WP_009892878.1|1787566_1788283_-|aquaporin-family-protein
MSPYIAEFIGTALLVLLGNGAVANVLLAKTKGKGADLIVIVMGWAMAVFVAVYVTASFSGAHLNPIVTISLALAGKFAWAKVGGYIAAQMLGGMAGALLVWLAYRQHFAKETDPDLKLAVFCTAPAIRSVTHNVLTEAICTFVLILGVLYLASPQVGLGALDALPVGLLVLGIGISLGGPTGYAMSPARDLSPRIMHALLPIPGKRDSDWRYAWVPVLGPLVGGVLAANLYLYLHTAH
>NZ_CP004381.1|WP_009892877.1|1788396_1789899_-|glycerol-kinase-GlpK
MQDQYILALDQGTTSSRAMLFDRQGNIVSIAQKEFEQIYPRPGWVEHDPQEIWSTQAGVAAEAVTRVGLNGTSIAAIGITNQRETTIVWDRETGHPIYNAIVWQDRRTADFCDQLKAQGLSEKVRAKTGLPIDSYFSATKIRWILDNVEGAREKARQGKLAFGTVDSWLVWNFTKHELHVTDVTNASRTMLFNIHTLDWDDELLDALEIPRSMLPQVRASSEIYGPTKTTVFASKIPLAGIAGDQQAALFGQMCTSSGMVKNTYGTGCFLMMNTGETPIESQNNLVTTIAWQVDGKVNYALEGSIFIAGAVVQWLRDGLGIIKSASEIEALAAGVPHTDGVYLVPAFAGLGAPHWNARARGSLFGVTRGTTSAHLARAALDSIAYQSLDVLKAMEADSGIRIGELRVDGGASANNLLMQFQADLLGVDAVRPRVTETTALGAAYLAGLAIGYWKNVDELHSQWQLERRFAPSMQREQVSSCLCGWQRAVRAAKAWADDTQ
>NZ_CP004381.1|WP_009892876.1|1790004_1791537_-|glycerol-3-phosphate-dehydrogenase
MTQQNRYDLLVVGGGINGAGIARDAAGRGLSVLLCEQDDLASHTSSSSTKLIHGGLRYLEYKEFGLVRKALQERETLLRAAPHIIWPLRFVMPHMPNLRPAWLIRIGLFLYDHLAKRELLPGSRGIDMRRHPAGAPLVDSIKRGFVYSDGWVDDARLVVLNALDAQERGARILTRTKLVSAERRDGQWHARLQRADGSTLDVCARAVANAAGPWVGDVLHGALGRGAQHSVRLVKGSHIVTRRLFDHDHAYIFQNPDKRIIFAIPYERDFTLIGTTDVEYRDDPSRVAIDRDETRYLCESINRYFKRKISPADVCWTYSGVRPLLEDENADNPSAVTRDYRLELDGGDGAPLLSVFGGKITTFRKLAEEATDMLGGALGASRGAWTAGVPLPGGDIADARFAPFAEAFAKRHPWLPAALARRYARAYGTRAERVIGGAKSLAELGAELAPGLYEAELRYLRDAEWASCADDVLWRRSKLGLHVAPGTLDAVTAALDAWFGAAREAASAAH
>NZ_CP004381.1|WP_009892870.1|1791704_1792076_+|hypothetical-protein
MRTMIAAGALALLAGCAGGPAMFGGWGGPSFADLQRSCGDVRDYGEDAQAVYSAVFDAWVAKRHGKLTDARFCAFENELAQHRAALGTSTDPAERGRWVSYLNDARARALSWRAAVDPSLRGG
>NZ_CP004381.1|WP_004189182.1|1792142_1792340_-|phage-tail-assembly-chaperone
MLSPHEFATLLLVKDAPDQADMDRDELDALLERQLVKLEALGSGRKYCVTEIGDAALRSIKLRYS
>NZ_CP004381.1|WP_043296249.1|1792669_1793449_-|DeoR/GlpR-transcriptional-regulator
MTRDPRLTLNARQQELLEWVQRDGFVTVDDLAAHFNVTPQTIRRDVNWLADLNLLRRYHGGASLPTSSENVSYTARQRMFHDEKRRIAALAASHIPDQASLFINLGTTTEEVARALNRHRGLRVITNNLNVASMMSGYPECEVLITGGIVRPWDKGIVGELAIDFIRQFRVDYAIIGTSSIESDGTLRDFDTREVRVAEAIIQHARTVYLVTDHSKFGRPALVRQGHLNQIHSLFTDKPLPDEMAETIAQAGTQVYVAD
>NZ_CP004381.1|WP_025404068.1|1793687_1795352_+|gamma-glutamyltransferase-family-protein
MTLHSNISGVPFSWRNPYLTTRVPVFARNVVSTSHPLAAQAGLRMLWKGGNAVDAAIAAAAAITVVEPVSCGLGGDAFALVWDGAKLHGLNASGVAPAAWSVDYFRRRHGDAGNGLARQPTRGWDTVTVPGVIAGWEALHAKFGSLPFADLLEPAIELAERGHAVAAVVAHKWAAAVPELNGQPGFAETFMPRGRAPEVSELVRLPGHAKTLRTIAAEGARAFYEGSIAESIAGFFRDGGGALTADDLRAYRPEWVEPIGKDFRGYTVHEIPPNGQGIAALIALGIVERFGLDDLPLDSAEAQHVQIEAMKLAFADVYRYVADPRAMALTPAQMLDDAYLDARAKLIDVTRATHFSFGMPRAGGTIYLSAADERGMMVSFIQSNYMGFGSGLVVPGMGIALQNRGCGFSMDPTSPNVVEGGKRPFHTIIPAFVTQQAGGARHAVMSFGVMGGDMQPQGHLQTIVRMLGYGQQPQAACDAPRWKVSRSFTLDVEAALGASVVDALAARGHTIQAIDDPYMDFGSGQFIWRLDRDEPDRGYVAASDSRRDGLAAGF
>NZ_CP004381.1|WP_009892862.1|1795657_1796491_+|ferritin-like-domain-containing-protein
MLADSDTTHEMPWRIEDIDLTRIDRQRAAANEDLLLLLCAASFIESGSDLYTSNLSQFFDDDPEVSAWLNTEWEHEELQHGRALKAYIAHVWPEFDWDLAFADFFDEYSKTCSLEAFEKTRALEMVARCVVETGTATLYRAINECSDEPVLKEITDNIRTDEVRHYKHFFRYFKKYNKVEGNGRLAVLGALMRRVLEIRNEDSEIALRHVFAIRYPDRAGDSAYCRERTARVNALVRRNLSADMCVKMLLKPLDLPAKIQPGVHYPLTKLTQHVFFR

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Crispr_ID: NZ_CP004381_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP004381_3

3384144-3384258

Orphan

Consensus_repeat	Method
CATGCGCGCCGCCGCGCACGCGCTTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP004381_3

>merge|NZ_CP004381|3|3384144-3384258|CRISPRCasFinder
CAACGGCGGCGGCGCACATGCGCGCCGCCGCGCACGCGCTTCGCTCCCCCGCATCGCCCCCCCGCTTCGCCACCGCATTGACCGCCGCATGCGCGCCGCCGCGCACGCACTTCGC

>NZ_CP004381|3|3|3384144-3384258|CRISPRCasFinder
CAACGGCGGCGGCGCACATGCGCGCCGC	CGCGCACGCGCTTCGCTCCCCCGCATCGCCCCCCCGCTTCGCCACCGCATTGACCGCCG
CATGCGCGCCGCCGCGCACGCACTTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP004381.1\|WP_009890518.1\|3384491_3384845_+\|hydroxyisourate-hydrolase	unknown	unknown	gnl\|CDD\|225226
NZ_CP004381.1\|WP_038712608.1\|3379340_3380279_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NZ_CP004381.1\|WP_004192898.1\|3377944_3378376_+\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|237569
NZ_CP004381.1\|WP_011402254.1\|3378701_3379190_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004381.1\|WP_009890516.1\|3384894_3386097_+\|membrane-protein	unknown	unknown	gnl\|CDD\|368779
NZ_CP004381.1\|WP_009909165.1\|3393957_3394899_-\|muramoyltetrapeptide-carboxypeptidase	unknown	unknown	gnl\|CDD\|183059
NZ_CP004381.1\|WP_162465428.1\|3375562_3375763_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004381.1\|WP_004521233.1\|3375761_3376442_+\|PspA/IM30-family-protein	unknown	unknown	gnl\|CDD\|224755
NZ_CP004381.1\|WP_038707959.1\|3391292_3392783_-\|NCS1-family-nucleobase:cation-symporter-1	unknown	unknown	gnl\|CDD\|271404
NZ_CP004381.1\|WP_009890521.1\|3381328_3382258_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176152
NZ_CP004381.1\|WP_038712601.1\|3390418_3391282_-\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|226611
NZ_CP004381.1\|WP_009890502.1\|3392938_3393634_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP004381.1\|WP_009904901.1\|3382447_3383860_-\|8-oxoguanine-deaminase	unknown	unknown	gnl\|CDD\|236184
NZ_CP004381.1\|WP_009909169.1\|3387545_3388559_-\|allantoicase	unknown	unknown	gnl\|CDD\|237319
NZ_CP004381.1\|WP_009890522.1\|3380367_3380577_+\|dodecin-domain-containing-protein	unknown	unknown	gnl\|CDD\|377810
NZ_CP004381.1\|WP_038707963.1\|3388798_3389320_-\|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase	unknown	unknown	gnl\|CDD\|225736
NZ_CP004381.1\|WP_009890543.1\|3376555_3377761_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP004381.1\|WP_127462262.1\|3380631_3381273_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004381.1\|WP_009890512.1\|3386312_3386651_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004381.1\|WP_009890507.1\|3389319_3390273_-\|allantoinase-PuuE	unknown	unknown	gnl\|CDD\|211797

Protein	Function_ID	Function_description	E-value
NZ_CP004381.1\|WP_009890518.1\|3384491_3384845_+\|hydroxyisourate-hydrolase	gnl\|CDD\|225226	COG2351, COG2351, Transthyretin-like protein [General function prediction only].	3.76465e-65
NZ_CP004381.1\|WP_038712608.1\|3379340_3380279_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	4.30917e-79
NZ_CP004381.1\|WP_004192898.1\|3377944_3378376_+\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|237569	PRK13952, mscL, large conductance mechanosensitive channel protein MscL.	2.50619e-80
NZ_CP004381.1\|WP_009890516.1\|3384894_3386097_+\|membrane-protein	gnl\|CDD\|368779	pfam06181, Urate_ox_N, Urate oxidase N-terminal. Cytochrome c urate oxidase (Uox) PuuD is involved in purine degradation. In contrast with soluble Uox it is a membrane protein with an 8-helix transmembrane N-terminal domain and a C-terminal cytochrome c.	0
NZ_CP004381.1\|WP_009909165.1\|3393957_3394899_-\|muramoyltetrapeptide-carboxypeptidase	gnl\|CDD\|183059	PRK11253, ldcA, L,D-carboxypeptidase A; Provisional.	0
NZ_CP004381.1\|WP_004521233.1\|3375761_3376442_+\|PspA/IM30-family-protein	gnl\|CDD\|224755	COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms].	5.00746e-22
NZ_CP004381.1\|WP_038707959.1\|3391292_3392783_-\|NCS1-family-nucleobase:cation-symporter-1	gnl\|CDD\|271404	cd11555, SLC-NCS1sbd_u1, uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily; solute-binding domain. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	0
NZ_CP004381.1\|WP_009890521.1\|3381328_3382258_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176152	cd08463, PBP2_DntR_like_4, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.40332e-127
NZ_CP004381.1\|WP_009890502.1\|3392938_3393634_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.67953e-47
NZ_CP004381.1\|WP_009904901.1\|3382447_3383860_-\|8-oxoguanine-deaminase	gnl\|CDD\|236184	PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase; Reviewed.	0
NZ_CP004381.1\|WP_009909169.1\|3387545_3388559_-\|allantoicase	gnl\|CDD\|237319	PRK13257, PRK13257, allantoicase; Provisional.	0
NZ_CP004381.1\|WP_009890522.1\|3380367_3380577_+\|dodecin-domain-containing-protein	gnl\|CDD\|377810	pfam07311, Dodecin, Dodecin. Dodecin is a flavin-binding protein,found in several bacteria and few archaea and represents a stand-alone version of the SHS2 domain. It most closely resembles the SHS2 domains of FtsA and Rpb7p, and represents a single domain small-molecule binding form.	1.01699e-32
NZ_CP004381.1\|WP_009890543.1\|3376555_3377761_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.23436e-06
NZ_CP004381.1\|WP_038712601.1\|3390418_3391282_-\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|226611	COG4126, COG4126, Hydantoin racemase [Amino acid transport and metabolism].	4.13185e-80
NZ_CP004381.1\|WP_038707963.1\|3388798_3389320_-\|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase	gnl\|CDD\|225736	COG3195, COG3195, Uncharacterized protein conserved in bacteria [Function unknown].	3.08249e-76
NZ_CP004381.1\|WP_009890507.1\|3389319_3390273_-\|allantoinase-PuuE	gnl\|CDD\|211797	TIGR03212, uraD_N-term-dom, putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.	0

>NZ_CP004381.1|WP_009904901.1|3382447_3383860_-|8-oxoguanine-deaminase
MERYSSARAGAQSQSPNRPRTLVVKHADVLVTMDGARRELRDAGLYVEDNRIVAVGPSAELPAQADEVLDLRGHLVIPGLVNTHHHMYQSLTRAIPAAQNAELFGWLTNLYRIWAHLTPEMIEVSALTAMAELLLSGCTTSSDHLYIYPNGSRLDDSIAAAQRIGMRFHASRGSMSVGQRDGGLPPDSVVEREPDILRDTQRVIETYHDEGRYAMLRVVVAPCSPFSVSRGLMRDAAALAREHRVSLHTHLAENANDVAYSRETFGMTPAEYAEDLGWVGRDVWHAHCVQLDESGIALFARTGTGVAHCPCSNMRLASGIAPVARMRVAGVPVGLGVDGSASNDGAQMVAEVRQALLLQRVGFGPDAMTARDALEIATLGGARVLNRDDIGALAPGMAADFVAFDLRTPQFAGALHDPVAALVFCAPSQAAYSVVNGRVVVREGRLTAFEIEPLVERHNALAKALCEAAR
>NZ_CP004381.1|WP_009890521.1|3381328_3382258_+|LysR-family-transcriptional-regulator
MSQQREAIDTYLLRVLHTLLMERSVTRAAVKLNQSQPAISAALRRLRDITGDPLLVRGKSGMVPTEYGLRLLEPVQNALREIERIKFQQHNFDPATSIRCYRIGCPDYLNVLFVPTVVERFRQAAPNATLEFHSLGPAFDYELALEDGKLDIVVGNWPEPPEQLHLSNLFVDEIVCLMSNAHPFAKRGGLTLDQYLNAPHLAPTPYSVGQRGAIDVHLARERLKRHVVVTLPYFNLAPYVLVKSDLIFTTTRLFADHYAKFLPLSVVPAPLDFPPMQYYQLWHERCHYSDEVRWLRGLVAEATRTLIDA
>NZ_CP004381.1|WP_127462262.1|3380631_3381273_+|hypothetical-protein
MERSFAREATVAPRHTRNACRILPLPRCGIRRNRHASRRTSRVSGERSSCPHDDLRRTARRRSFTAFRTAGPLAEIDAESATPSRATHNDNIAPTRIDTRDAPVRRADVRGRRVTGLASFARRRIDLFSSLVSPSSLAIHFLPPFLPPLFRTPFRIPFCAPFRHPFRDPHRRAFARLHRKLVTRRPRRSPVANRPRRARRLECAALDAPLCPY
>NZ_CP004381.1|WP_009890522.1|3380367_3380577_+|dodecin-domain-containing-protein
MNDHVYKLLELTGSSRQSSDDAIRNAISKAAKTMRNLHWFEVTDMRGHIEGDQVIHWQVTLKVGLRIED
>NZ_CP004381.1|WP_038712608.1|3379340_3380279_-|NAD(P)-dependent-oxidoreductase
MMGGNFNRYSNERKGEDVDVGFCGPGLMGAPMIRHLLSAGHRVHVWNRTRAKADALAAHGAQVVDTPAELAARAQTVMLCVLDAQAVGDVVFGASGVLAGDAAVRCVTRIVDHSSIPPAATRAYAARAAALGASWVDAPVSGGVPGAEAGTLAVMAGGAQADVDAVRGLIGAYASRVTHLGDAGAGQTAKLCNQAIVTASVTAIAEAVGLAQASGIDAARLAEALAGGWADSVLLQTFVPRMTSTGHPPIGALKTFQKDVDAIADAARDAGAVMPVAATVQQVLRLGAAMGLAQADFAAFIDIVRPQAKRGE
>NZ_CP004381.1|WP_011402254.1|3378701_3379190_+|hypothetical-protein
MRMPHFLQLFLRRVFMSFPKKRRRAQPDGQESFLAVLRHAKPFAQLDTKIARARAQDEPVLYAHVLPGLDVLLCSVRGAQPPYPAIVELRKRCIESIANALEQPLDGLENGGYWYEANGFGFLVFASRARARILPEFGAGVKAGLRSGIGQPNAGDTTPRSL
>NZ_CP004381.1|WP_004192898.1|3377944_3378376_+|large-conductance-mechanosensitive-channel-protein-MscL
MSIIKEFKEFAVKGNVMDLAIGVIIGGAFSKIVDSVVKDLIMPVIGVLTGGLDFSNKFVLLGQIPASFKGNPESFKDLQAAGVATFGYGSFITVLINFIILAFIIFLMVKFINKLRKPEEAAPAATPEDVLLLREIRDSLKQR
>NZ_CP004381.1|WP_009890543.1|3376555_3377761_+|tetratricopeptide-repeat-protein
MKKLLAAVGLSLILVSAAANAAVPSLQQIQQSIAQGNWQRADAQLSQVIDAYPDNARARYLYGQVLDREGRPAEALAQIERAKSLDPQLRFTDPSRFAQTEARVRADARRATSAQSSRSATSGGMLVAPQTQGQAQSQFAAAPAAPAHRGPSAGMWIGFAVLIGAIVLVLRRTLRRARSADDQRAGDERRAQLKRATDVLNDVRPLKLDARLSTAPGAGALNGEIEALEAQARELVETLSNGQNPVPPYRLDELEKQFASLKARVEGRPDPGAASAAANAPGQTGSVFAQEADRLTGAQGQPPYSPYPPQPQQQPPVVIQQGGGFGGGMGGLLTGVLLGQAMSNGRDRVIEREVIVDDEARRRAGADPGIDFGQGDSWDSGGSDGGGIDLGSSGDDWSNNG
>NZ_CP004381.1|WP_004521233.1|3375761_3376442_+|PspA/IM30-family-protein
MSLFDSISRTIKGLLNDAADSVQDPSRDARQIVRELDDSIGRAENSLIEIEAQVATQRSKRDTADERAKKYEDGAKRALQSGDEALAREALAAQANAEAERDALARELDTLEPSVDKLKGQIADMRARRNDLNARSNILQAKQEIAQAKDVAATALGGIGGKNLSEDFQKLEDKVALSNARSDARLNSADTNSGRALDDKLAALNKGPSVEDRLEALKKQLNTPAQ
>NZ_CP004381.1|WP_162465428.1|3375562_3375763_-|hypothetical-protein
MDSSVSDERCAYRGRRFAAARARCVGGYYTTGSLKHRLNAARTPARAGRRALAAATENMAAGGHFQ
>NZ_CP004381.1|WP_009890518.1|3384491_3384845_+|hydroxyisourate-hydrolase
MGKLTTHVLDTAHGRPGAAIKIELHAISGGGSRLLKTALTNDDGRCDAPLLEGDALAAGTYELVFHAGDYFAAQGVALPEPRFVDLVVLRFGVADPAAHYHVPLLVSPWSYSTYRGS
>NZ_CP004381.1|WP_009890516.1|3384894_3386097_+|membrane-protein
MEGFIIDWLNLAIRWLHVVAAIAWIGESFYFVALDNSLKPPKDAQLKSRGVFGELWHVHGGGFYNMQKYLVAPPEMPEDLHWSKWPSYTTWMSGFGLFFVLYLLAPNTYLIDRNVLDMGPVVAVASALGFLLAGWIVYDCACRMLGGRDKLLGVFVGLYVIAAAYIACHVFSGRAAYLIVGAMLATIMTANVFFVIIPGQRKMVDKLLKGETPDPIYGKRGKQRSVHNTYFTLPVVFAMLSNHYAMTYTNQYNWIVLVVIMLAGALIRQFFVMRHRGQQLWYLPLGGVALMLLALVTTMPKPIAPEAQAANAPNVPKLAIKDVAPILQQRCVACHSAKPTLVGSAPAGVMFDTSDEIARNAPRIYQQAVQLKAMPIGNLTHMTDDERTKIAAWFESGATK
>NZ_CP004381.1|WP_009890512.1|3386312_3386651_-|hypothetical-protein
MVIVGCIYLLVFAPLVYVLFLLHGMTIRLGGACLGIAAWVALSIAAIGIVRGWAWSRHWLIGGLIGLWIVSSNAGANGGDVAARGLDYICVALPLFTRRSTAFFRSRRDIEA
>NZ_CP004381.1|WP_009909169.1|3387545_3388559_-|allantoicase
MALPLSDPNAPEFTRRYVNLADPRLGAQALEASDDFFAPKERMLSPEPAVFIPGKYDDHGKWMDGWETRRKRTTGYDWCIVKLARPGVIKGFDIDTSHFTGNFPPAASIEAAHVPDGVPNEATKWVEVVPSTTLQGNSHHYVEARDANAYTHLRVNIYPDGGIARLRVYGQPQLDWAGASRSELFDLAAMDNGGYVVAANNQHFGLASNMLLPGRGVNMGDGWETRRRREPGNDWAIVALAQPGVIRKIEVDTAHFKGNFPDRCSVQAAYVTGGTDSSLVTQAMFWPVLLGEQKLQMDKQHVFEAELAALGPVTHVRLNIIPDGGVSRLRVWGTLDK
>NZ_CP004381.1|WP_038707963.1|3388798_3389320_-|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase
MKAMRYTLEQLNAMSTEAFVAALSGIFEHSPWVAEAAAAARPFSSIDALHRTMRDAVDAAGDARQLALINAHPELAGKAAVRGELTAESTREQSGAGLDRCTQEEFDKLQRLNRAYREKFGFPFILAVRGYDRHGIIENFEARIDHTQDEELRASLGQIYRIARFRLDDLIDA
>NZ_CP004381.1|WP_009890507.1|3389319_3390273_-|allantoinase-PuuE
MAFDPNYPRDLVGYGRHPVQANWPGRARVAVQFVLNYEEGGENCVLHGDPASEQFLSEIVGAAAYPARHMSMESIYEYGSRAGVWRILREFDKRGLPLTVFGVGMAIERHPELARAFVEFGHEIACHGWRWIHYQDMTPEREAEHMKLGMEAIERVTGVRPLGWYTGRDSPNTHRLVAEYGGFLYDSDHYGDDLPFWMDVEVPGGARAPQLIVPYTLDANDMRFATPQGFNTADHFFHYLRDAFDVLYEEGDEAPKMMSIGMHCRLLGRPGRFRALQRFLDHIERHDRVWVARRVDIARHWREHHPYRPHARREGDA
>NZ_CP004381.1|WP_038712601.1|3390418_3391282_-|aspartate/glutamate-racemase-family-protein
MKIKLINPNTTQRMTDAMGRCAREVAAAGTAIVAVSPAMGPPSIEGHYDEALATPGLLAEVAAGERDGFDGYVIACFGDPGLYAARELARGPVIGIAEAAMHAASVLAPGFSVVTTLARTCGMAWHLAERYGMKRFCRNVRATDVAVLDLDRPGSAARRVIVDECRRALDEDGTDAIVLGCAGMAEFAHEIEAAIGAPVVEGVTAAVKWAEALIALKLATAKRGDFARPLAKRYDGEFARFSPDGAFARGAEAAAGAAVGPDAAAPGAAIQDARSPDAFAQPHIHSV
>NZ_CP004381.1|WP_038707959.1|3391292_3392783_-|NCS1-family-nucleobase:cation-symporter-1
MAQFSVAQQSASYRPNEGRPGDPDGGAAMPAGYSKRLYNEDLAPLANQNWGAYNIFAFWMSDVHSVGGYVFAGSLFALGLTSWQVLAALIVGISIVNVLCNLIAKSSQQLGVPYPVACRATFGVLGANVPAVIRGLIAIAWYGIQTYLASSALVIVVLKFFPQWMPYADVHRYGFLGLSALGWAGFMLLWVLQAFVFWNGMETIKKFIDFAGPAVYVVMFVLAGYMVWRAGWRNIGLDLGGVKYHGAEVLPVMVTAISLVVSYFSGPMLNFGDFSRYCRSYGSVKRGNFWGLPVNFLAFSLVTVITTAATLPVFGQLITDPVETVGRIDHPTAVILGALTFTIATIGINIVANFVSPAFDFSNVAPRLISWRAGGMLAAVASVFITPWNLFNNPAVIHYTLDVLGSFIGPLYGVLIVDFYLVKRGALRRDDLYTTSADGAYWYRDGVNRRAVAALLPAAAIAVACVMVPAPSGLANFSWFIGAALGGAFYRALAKA
>NZ_CP004381.1|WP_009890502.1|3392938_3393634_-|GntR-family-transcriptional-regulator
MTKKDSALTGASPESIAERIRTAILEHRLAPGTKLTEAQLCEVFGVKRGTIRQALALLATDRLVDLEPNRGAFVASPTLQDVHEVFEMRRIVELAVMERLATGPGAKRLKGVAATIDKERHAFERRDFPAWIRLSGEFHTELAALTGNTVLRDCLGGLVARSTLMSALYESHGRSPCSFDDHAQILAALEAGDAKRAAQLMAHHLQHVELRMLDRPAQGAVDLREVFGHSG
>NZ_CP004381.1|WP_009909165.1|3393957_3394899_-|muramoyltetrapeptide-carboxypeptidase
MISTSRTPRTIRLLAPSGYPHDPAAVDRALERLSAEQHRIENLDATQRRYQRFAGTDGERAGDLNRLADPSLPLPDIGLAVRGGYGAARILHGLDYRGLESRLRDEPVALVGHSDFTAIQLALYAKARVKTFGGPMLSADFGAQTPSEFTLAHFWQTLTQPTTTIVSDVPQAQVVNASGTLWGGNLAILASLVGTPYMPQIEGGILFVEDVNEQPFRIERMIYQLHLAGILARQQALVLGQFTGARPFEYDNGYDMQTMIEQIRSVIGIPVVTGLQFGHVPDLLTLPFGARAELVANEHGFRLTMSDYPHLAA

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

66093 : 74810

Acanthocystis_turfacea_chlorella_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009908916.1\|66093_67005_+	alpha/beta hydrolase	A7K906	Acanthocystis_turfacea_chlorella_virus	4.2e-11	24.6
WP_009889864.1\|67340_68264_-	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	3.2e-43	36.2
WP_009889862.1\|68442_69684_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_009904404.1\|69778_70681_-	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	4.3e-53	39.9
WP_009889858.1\|71015_71333_-	competence protein ComE	NA	NA	NA	NA
WP_009908914.1\|71404_72397_-	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	9.1e-28	30.9
WP_080511617.1\|72454_73378_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.3e-15	27.9
WP_009908912.1\|73409_74810_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.1e-79	38.7

DBSCAN-SWA_2

421168 : 430399

unidentified_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009889266.1\|421168_422713_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	3.3e-24	31.2
WP_009889265.1\|422748_423276_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_009889263.1\|423272_423956_+	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	3.3e-05	26.0
WP_009904054.1\|424020_424836_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	3.3e-36	32.9
WP_038712436.1\|425011_427021_-	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	1.7e-52	35.2
WP_009889258.1\|427052_428183_-	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	1.8e-24	38.0
WP_009889255.1\|428446_430399_-	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	1.2e-148	49.5

DBSCAN-SWA_3

694235 : 753216

Pseudomonas_phage(33.33%)

tRNA,transposase,plate,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009888666.1\|694235_695534_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_009909912.1\|695602_696685_+	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	6.7e-08	46.6
WP_009888662.1\|696710_697568_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_009888661.1\|697647_697956_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_009888659.1\|697969_698566_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_009888656.1\|698821_699610_+	dioxygenase	NA	NA	NA	NA
WP_009888654.1\|699766_701368_-	APC family permease	NA	NA	NA	NA
WP_004196837.1\|701802_702006_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.3e-21	73.1
WP_009888639.1\|702183_703446_-	Hsp70 family protein	NA	NA	NA	NA
WP_009888637.1\|703662_704268_-	nitroreductase family protein	NA	NA	NA	NA
WP_009909916.1\|704579_705863_-	MFS transporter	NA	NA	NA	NA
WP_009888634.1\|706021_706669_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_009888632.1\|706989_707595_+	DUF1415 domain-containing protein	NA	NA	NA	NA
WP_009888631.1\|707655_708552_-	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_009888630.1\|708683_709820_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_009888629.1\|710509_711016_-	hypothetical protein	NA	NA	NA	NA
WP_043288838.1\|711618_713769_+	peptidase M1	A0A0P0IY26	Acinetobacter_phage	1.3e-47	25.7
WP_009888623.1\|714812_715061_+	hypothetical protein	NA	NA	NA	NA
WP_009888621.1\|715162_715384_+	hypothetical protein	NA	NA	NA	NA
WP_009888619.1\|716034_717303_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_009888617.1\|717317_719573_+	peptidase domain-containing ABC transporter	A0A2R8FG22	Brazilian_cedratvirus	2.3e-10	31.9
WP_009888616.1\|719569_721018_+	TolC family protein	NA	NA	NA	NA
WP_009910677.1\|721214_722180_-	hypothetical protein	NA	NA	NA	NA
WP_025369750.1\|722305_723157_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_011402549.1\|723442_727348_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_009888606.1\|727344_728334_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_009888604.1\|728338_729274_+	OmpA family protein	NA	NA	NA	NA
WP_009888602.1\|729473_730604_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_009910486.1\|730689_733353_-	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	1.8e-91	31.2
WP_009888601.1\|733386_734487_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_043296087.1\|734450_736289_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_009888597.1\|736369_736852_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_009906860.1\|736909_737413_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_009888594.1\|737485_738976_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_009888592.1\|738992_739511_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_043036367.1\|739547_740237_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_025404121.1\|740610_741225_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_009888581.1\|741333_742680_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_009888580.1\|742676_743462_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_158338514.1\|744095_744224_+\|transposase	transposase	NA	NA	NA	NA
WP_080755162.1\|745796_746879_-	DUF4238 domain-containing protein	NA	NA	NA	NA
WP_127462273.1\|747195_747873_-	hypothetical protein	NA	NA	NA	NA
WP_127462275.1\|748321_749716_-	hypothetical protein	NA	NA	NA	NA
WP_080755163.1\|749767_751237_-	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_080755210.1\|751233_751467_-	hypothetical protein	NA	NA	NA	NA
WP_127462277.1\|751703_752453_-	hypothetical protein	NA	NA	NA	NA
WP_009909975.1\|752703_753216_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.1e-21	52.5

DBSCAN-SWA_4

983242 : 1044564

uncultured_virus(28.57%)

integrase,tRNA,transposase,protease

attL 983199:983258|attR 1043150:1043217

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
983199:983258	attL	NA	NA	NA	NA
WP_102860126.1\|983242_984442_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	9.2e-43	42.7
WP_080755165.1\|984602_985430_+	hypothetical protein	NA	NA	NA	NA
WP_009893658.1\|985797_986202_+	PaaI family thioesterase	NA	NA	NA	NA
WP_009893657.1\|986240_987110_+	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_009902110.1\|987231_988248_-	D-2-hydroxyacid dehydrogenase family protein	NA	NA	NA	NA
WP_009893648.1\|988685_989741_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009908309.1\|989969_992579_-	DNA topoisomerase III	A0A2P1ELA0	Moumouvirus	3.8e-17	25.6
WP_009893645.1\|992788_993160_-	thioredoxin family protein	NA	NA	NA	NA
WP_009893644.1\|993220_994408_-	DNA-protecting protein DprA	S6BFL3	Thermus_phage	4.7e-23	39.8
WP_009893641.1\|994639_995143_+	peptide deformylase	A0A067XQZ3	Caulobacter_phage	3.2e-13	31.5
WP_009908310.1\|995174_996161_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	3.9e-07	36.5
WP_009893639.1\|996281_996917_+	LysE family translocator	NA	NA	NA	NA
WP_009893638.1\|997025_997883_+\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
WP_043296126.1\|998145_999414_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	9.8e-43	42.7
WP_025404143.1\|999989_1001558_+	MFS transporter	NA	NA	NA	NA
WP_011402635.1\|1001977_1003498_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_009906651.1\|1003803_1004832_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_025369704.1\|1004932_1006000_-	ADP-heptose--LPS heptosyltransferase	NA	NA	NA	NA
WP_009906653.1\|1006032_1007736_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA
WP_011402636.1\|1007868_1009257_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_043296128.1\|1009290_1010409_-	alginate lyase family protein	NA	NA	NA	NA
WP_009910201.1\|1010560_1013488_-	aminomethyl-transferring glycine dehydrogenase	M4QFZ1	Prochlorococcus_phage	1.2e-258	51.2
WP_009906658.1\|1013891_1014272_-	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_009906659.1\|1014376_1015495_-	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_009906661.1\|1016127_1016487_-	hypothetical protein	NA	NA	NA	NA
WP_009906662.1\|1016656_1017709_-	oxidoreductase	NA	NA	NA	NA
WP_009910205.1\|1018169_1018901_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_025369702.1\|1020072_1022160_+	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	9.9e-101	35.8
WP_011402642.1\|1022440_1023343_-	cytochrome c5 family protein	NA	NA	NA	NA
WP_043296130.1\|1023835_1024843_+\|integrase	site-specific integrase	A0A1L7DQ84	Ralstonia_phage	1.1e-49	39.0
WP_043296132.1\|1025048_1026317_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.4e-41	42.2
WP_127462281.1\|1026659_1027070_+	hypothetical protein	NA	NA	NA	NA
WP_043296135.1\|1028928_1030455_+	site-specific DNA-methyltransferase	A0A220NUF4	Escherichia_phage	2.2e-57	37.5
WP_043296137.1\|1030463_1033160_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_043296138.1\|1033247_1033817_-	recombinase family protein	E5FFF9	Burkholderia_phage	5.0e-47	55.4
WP_127462283.1\|1033789_1034083_-	hypothetical protein	NA	NA	NA	NA
WP_043296139.1\|1034558_1037111_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	9.8e-50	27.3
WP_043296140.1\|1037121_1037928_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_043296142.1\|1037958_1040535_+	hypothetical protein	NA	NA	NA	NA
WP_077190848.1\|1041084_1041516_+	hypothetical protein	NA	NA	NA	NA
WP_043296147.1\|1041512_1041797_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_043296150.1\|1042332_1042686_+	hypothetical protein	NA	NA	NA	NA
WP_043296152.1\|1042689_1043034_+	hypothetical protein	NA	NA	NA	NA
WP_043296157.1\|1043274_1044564_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.3e-42	43.9
1043150:1043217	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1973553 : 1984435

Streptococcus_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009892620.1\|1973553_1975668_-	elongation factor G	E4ZFJ7	Streptococcus_phage	1.2e-56	26.8
WP_011401863.1\|1975931_1976447_-	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	1.5e-13	41.2
WP_080511442.1\|1976642_1976858_-	hypothetical protein	NA	NA	NA	NA
WP_009892615.1\|1977118_1977697_-	pseudouridine synthase	NA	NA	NA	NA
WP_009892614.1\|1977961_1979221_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	6.8e-12	63.0
WP_043296272.1\|1979382_1980978_+	multicopper oxidase family protein	NA	NA	NA	NA
WP_004196460.1\|1981089_1981293_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_009892611.1\|1981823_1982138_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	2.6e-13	44.6
WP_009892610.1\|1982134_1984435_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	41.9

DBSCAN-SWA_6

2147774 : 2156791

uncultured_Caudovirales_phage(28.57%)

integrase

attL 2148662:2148679|attR 2162470:2162487

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080511449.1\|2147774_2148929_+	AAA family ATPase	A0A0U4B0G9	Pseudomonas_phage	2.3e-59	35.2
2148662:2148679	attL	NA	NA	NA	NA
WP_127446435.1\|2149028_2149793_+	hypothetical protein	NA	NA	NA	NA
WP_009892409.1\|2149796_2150177_+	hypothetical protein	NA	NA	NA	NA
WP_009892408.1\|2150267_2150702_+	hypothetical protein	NA	NA	NA	NA
WP_009892406.1\|2150776_2151379_+	hypothetical protein	A0A2H4JID6	uncultured_Caudovirales_phage	3.1e-47	50.0
WP_009892405.1\|2151382_2151949_+	hypothetical protein	A0A1B1IRK9	uncultured_Mediterranean_phage	3.8e-31	47.0
WP_009892404.1\|2151872_2153342_+	hypothetical protein	A0A2H4J6H2	uncultured_Caudovirales_phage	8.2e-126	46.7
WP_009892399.1\|2154253_2154526_+	hypothetical protein	NA	NA	NA	NA
WP_009892398.1\|2154532_2154952_+	glycoside hydrolase family protein	A0A1Q1PW74	Pseudoalteromonas_phage	1.4e-22	45.5
WP_043296291.1\|2154948_2155443_+	DUF2514 family protein	Q6J1Q4	Burkholderia_virus	2.6e-36	56.7
WP_043296293.1\|2155594_2156791_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	3.6e-87	45.6
2162470:2162487	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2520713 : 2573360

Burkholderia_phage(58.49%)

terminase,transposase,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080755182.1\|2520713_2521820_-	DNA cytosine methyltransferase	Q6J1P4	Burkholderia_virus	1.1e-117	57.1
WP_043295268.1\|2521870_2522869_-	RNA-directed DNA polymerase	H7BVN7	unidentified_phage	3.2e-41	33.9
WP_043295266.1\|2523212_2523569_-	four helix bundle protein	NA	NA	NA	NA
WP_043296342.1\|2523583_2524048_-	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_043296344.1\|2524078_2524441_-	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_043295259.1\|2524536_2525151_-	hypothetical protein	A9YX18	Burkholderia_phage	1.3e-21	100.0
WP_043295257.1\|2525147_2526914_-	AAA family ATPase	H2BD46	Pseudomonas_phage	3.8e-77	38.0
WP_043296346.1\|2526910_2527792_-	cell division protein FtsK	J7I0T4	Pseudomonas_phage	4.9e-33	32.5
WP_043296349.1\|2527822_2529022_-	hypothetical protein	J7HXB6	Pseudomonas_phage	7.8e-66	55.4
WP_043296350.1\|2529033_2529843_-	hypothetical protein	J7HXJ4	Pseudomonas_phage	4.4e-89	59.8
WP_043296352.1\|2529839_2530139_-	KTSC domain-containing protein	A9YWW2	Burkholderia_phage	4.2e-45	89.9
WP_043296355.1\|2530694_2530940_-	hypothetical protein	NA	NA	NA	NA
WP_043296357.1\|2530936_2531287_-	hypothetical protein	NA	NA	NA	NA
WP_043296359.1\|2531283_2531511_-	hypothetical protein	A0A2H4JA69	uncultured_Caudovirales_phage	8.4e-06	45.5
WP_043296361.1\|2531559_2531976_-	hypothetical protein	NA	NA	NA	NA
WP_043296363.1\|2532009_2532390_-	hypothetical protein	NA	NA	NA	NA
WP_043296365.1\|2533218_2533611_-	XRE family transcriptional regulator	E5AGE6	Erwinia_phage	3.3e-05	44.1
WP_043296366.1\|2534062_2534293_-	hypothetical protein	NA	NA	NA	NA
WP_043296368.1\|2534459_2534834_+	hypothetical protein	A9YWX9	Burkholderia_phage	4.0e-61	91.9
WP_043296609.1\|2534836_2535055_+	hypothetical protein	A9YWY0	Burkholderia_phage	1.1e-31	87.5
WP_127462313.1\|2535081_2535600_-	hypothetical protein	NA	NA	NA	NA
WP_043296372.1\|2535692_2536562_+	hypothetical protein	A9YWY3	Burkholderia_phage	1.1e-146	89.6
WP_043296374.1\|2536558_2537728_+	site-specific DNA-methyltransferase	Q8W6P4	Burkholderia_virus	2.8e-137	64.9
WP_043296376.1\|2537727_2538699_+	phosphoadenosine phosphosulfate reductase family protein	Q8W6P3	Burkholderia_virus	8.0e-146	76.4
WP_043296611.1\|2539370_2539805_+	hypothetical protein	NA	NA	NA	NA
WP_102822915.1\|2539801_2540050_+	hypothetical protein	NA	NA	NA	NA
WP_158338967.1\|2540046_2540220_+	hypothetical protein	NA	NA	NA	NA
WP_043295224.1\|2540216_2540687_+	RusA family crossover junction endodeoxyribonuclease	A9YWY9	Burkholderia_phage	3.7e-72	87.8
WP_043295222.1\|2540696_2541026_+	hypothetical protein	A9YWZ0	Burkholderia_phage	1.9e-30	71.1
WP_052116546.1\|2541022_2541682_+	hypothetical protein	NA	NA	NA	NA
WP_043296378.1\|2541811_2542471_+	hypothetical protein	A9YWZ4	Burkholderia_phage	1.2e-97	75.6
WP_077056326.1\|2542440_2542992_+	hypothetical protein	A0A0N9BAQ5	Vibrio_phage	4.1e-22	38.6
WP_043295219.1\|2543026_2543506_+	DUF2280 domain-containing protein	A9YWZ5	Burkholderia_phage	4.2e-55	76.3
WP_043295217.1\|2543456_2545010_+\|terminase	phage terminase large subunit	H9C0C7	Vibrio_phage	3.9e-110	44.5
WP_043296380.1\|2545030_2546497_+	DUF1073 domain-containing protein	A9YWZ7	Burkholderia_phage	1.3e-267	95.8
WP_043296381.1\|2546493_2547249_+\|capsid	minor capsid protein	A9YWZ8	Burkholderia_phage	2.7e-133	97.2
WP_043296383.1\|2547329_2547851_+	hypothetical protein	A9YX01	Burkholderia_phage	5.2e-91	96.0
WP_043296385.1\|2547996_2549445_+	DUF2213 domain-containing protein	A9YX03	Burkholderia_phage	2.5e-220	93.8
WP_043296387.1\|2549454_2549961_+	hypothetical protein	NA	NA	NA	NA
WP_043296389.1\|2550031_2551123_+	DUF2184 domain-containing protein	A9YX23	Burkholderia_phage	7.6e-161	98.7
WP_043296391.1\|2551124_2551592_+	hypothetical protein	A9YX24	Burkholderia_phage	6.4e-24	98.2
WP_009927900.1\|2551655_2552039_+	DUF4054 domain-containing protein	A9YX25	Burkholderia_phage	9.4e-66	100.0
WP_043296393.1\|2552067_2552547_+	hypothetical protein	A9YX26	Burkholderia_phage	8.7e-77	94.3
WP_043296395.1\|2552608_2552980_+	hypothetical protein	A9YX28	Burkholderia_phage	5.7e-60	88.6
WP_043295200.1\|2552984_2553575_+	hypothetical protein	A9YX29	Burkholderia_phage	1.6e-101	92.9
WP_043295198.1\|2553584_2555060_+	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	1.8e-112	48.1
WP_043295196.1\|2555075_2555516_+	DUF3277 family protein	A0A0P0IKY2	Acinetobacter_phage	1.9e-41	57.5
WP_051392327.1\|2555512_2556061_-	hypothetical protein	G0ZNE5	Cronobacter_phage	4.7e-18	36.8
WP_043296612.1\|2556138_2556696_+	hypothetical protein	A0A0N7IRF3	Acinetobacter_phage	4.8e-18	33.7
WP_043296396.1\|2556879_2559006_+	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	A0A2H4J9N7	uncultured_Caudovirales_phage	2.1e-42	37.8
WP_043296397.1\|2559002_2559578_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	2.0e-19	36.3
WP_043296398.1\|2559577_2559892_+	bacteriophage protein	A0A2H4J495	uncultured_Caudovirales_phage	1.6e-15	43.4
WP_127462315.1\|2559954_2560719_+	hypothetical protein	NA	NA	NA	NA
WP_102822916.1\|2560747_2561116_+	hypothetical protein	NA	NA	NA	NA
WP_043296403.1\|2561157_2562126_+	hypothetical protein	A9YX04	Burkholderia_phage	3.2e-155	94.5
WP_043296405.1\|2562122_2562500_-	hypothetical protein	A9YX05	Burkholderia_phage	2.0e-60	90.4
WP_038782783.1\|2562503_2563253_+	phage protein	A9YX06	Burkholderia_phage	3.9e-124	92.0
WP_043296407.1\|2563315_2563615_-	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	8.8e-19	58.3
WP_043296409.1\|2563632_2563911_-	excinuclease ABC subunit A	A0A222YWE2	Escherichia_phage	7.2e-07	46.4
WP_038782788.1\|2563972_2564326_+	hypothetical protein	A9YX11	Burkholderia_phage	9.6e-57	95.7
WP_043296410.1\|2564322_2565504_+	bacteriophage protein	A9YX12	Burkholderia_phage	2.3e-187	88.8
WP_043296412.1\|2565503_2566166_+	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	2.9e-115	90.0
WP_011400919.1\|2566215_2567436_-\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	3.0e-238	99.0
WP_043296613.1\|2568255_2568960_+	hypothetical protein	A9YX14	Burkholderia_phage	5.3e-107	91.9
WP_076854992.1\|2568969_2569152_+	hypothetical protein	A9YX15	Burkholderia_phage	5.7e-21	80.0
WP_158338970.1\|2569096_2570200_-	acyltransferase family protein	A9YX16	Burkholderia_phage	1.3e-176	87.4
WP_043296415.1\|2570234_2570834_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_043296417.1\|2570974_2571259_-	hypothetical protein	NA	NA	NA	NA
WP_043296421.1\|2571437_2571620_+	hypothetical protein	NA	NA	NA	NA
WP_043296423.1\|2571612_2572110_+	lysozyme	Q3HQU9	Burkholderia_phage	1.1e-82	92.1
WP_043296425.1\|2572106_2572652_+	hypothetical protein	NA	NA	NA	NA
WP_043296427.1\|2572648_2573125_+	DUF2514 family protein	Q6J1Q4	Burkholderia_virus	6.7e-53	75.5
WP_043296429.1\|2573159_2573360_+	hypothetical protein	Q3HQV3	Burkholderia_phage	6.9e-28	80.0

DBSCAN-SWA_8

2621546 : 2672577

Burkholderia_virus(50.0%)

integrase,transposase,plate,coat

attL 2605146:2605164|attR 2664716:2664734

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2605146:2605164	attL	NA	NA	NA	NA
WP_009891805.1\|2621546_2622986_-\|integrase	integrase family protein	NA	NA	NA	NA
WP_043296443.1\|2624029_2624935_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	8.3e-129	74.7
WP_009891801.1\|2625067_2626354_+	MFS transporter	Q6JIH2	Burkholderia_virus	2.3e-172	71.8
WP_009891799.1\|2626670_2627006_+	H-NS histone family protein	NA	NA	NA	NA
WP_025369440.1\|2627309_2628788_-	PHB depolymerase family esterase	NA	NA	NA	NA
WP_009910381.1\|2629548_2629767_-	hypothetical protein	NA	NA	NA	NA
WP_009910382.1\|2631259_2633110_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_009891792.1\|2633138_2634566_-	hypothetical protein	NA	NA	NA	NA
WP_009891791.1\|2634589_2634856_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_025369438.1\|2635381_2638180_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.5e-27	24.1
WP_009891787.1\|2638182_2639016_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_038713115.1\|2639152_2639710_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_011402458.1\|2639706_2640306_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_043296444.1\|2640302_2642732_+	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_043296618.1\|2642859_2643417_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_011402455.1\|2643413_2644013_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_080750995.1\|2644009_2646412_+	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_009891777.1\|2646520_2649856_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_009891776.1\|2650807_2651140_+	hypothetical protein	NA	NA	NA	NA
WP_011402452.1\|2651157_2651463_+	hypothetical protein	NA	NA	NA	NA
WP_043296445.1\|2651475_2654310_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.6e-27	24.1
WP_009909762.1\|2654311_2655187_+	hypothetical protein	NA	NA	NA	NA
WP_043296446.1\|2655183_2658030_+	hypothetical protein	NA	NA	NA	NA
WP_059738327.1\|2658152_2659046_+	hypothetical protein	NA	NA	NA	NA
WP_004543837.1\|2660970_2661279_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_080755192.1\|2661596_2661767_+\|transposase	transposase	NA	NA	NA	NA
WP_009891744.1\|2663753_2665067_+	divalent metal cation transporter	NA	NA	NA	NA
2664716:2664734	attR	NA	NA	NA	NA
WP_009891742.1\|2665816_2666080_+	hypothetical protein	NA	NA	NA	NA
WP_009891740.1\|2666279_2666561_-	H-NS histone family protein	NA	NA	NA	NA
WP_009909753.1\|2667046_2667973_-	amidohydrolase family protein	NA	NA	NA	NA
WP_011402450.1\|2668017_2669307_-	MFS transporter	NA	NA	NA	NA
WP_009891734.1\|2669722_2670616_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_025369429.1\|2671418_2671964_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_009891732.1\|2672016_2672577_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP004382

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP004381

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection