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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP006765 Corynebacterium doosanense CAU 212 = DSM 45436 strain CAU 212(T) plasmid pCdoos1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP006764 Corynebacterium doosanense CAU 212 = DSM 45436 strain CAU 212(T) chromosome, complete genome 7 crisprs DEDDh,DinG,cas3,WYL,csa3 0 2 2 0

Results visualization

1. NZ_CP006764
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP006764_1 109366-109458 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP006764_2 344363-344477 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP006764_3 459955-460031 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP006764_4 1276346-1276472 Orphan NA
2 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP006764_5 1457704-1457785 Orphan NA
1 spacers
WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP006764_6 2057471-2057608 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP006764_7 2202659-2202833 Orphan NA
2 spacers
DinG

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP006764_3 3.1|459980|27|NZ_CP006764|CRISPRCasFinder 459980-460006 27 NZ_CP015881 Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence 56271-56297 4 0.852
NZ_CP006764_3 3.1|459980|27|NZ_CP006764|CRISPRCasFinder 459980-460006 27 NZ_CP030263 Ensifer adhaerens strain Corn53 plasmid AA, complete sequence 372700-372726 4 0.852
NZ_CP006764_3 3.1|459980|27|NZ_CP006764|CRISPRCasFinder 459980-460006 27 NZ_CP053208 Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence 204582-204608 6 0.778
NZ_CP006764_5 5.1|1457730|30|NZ_CP006764|CRISPRCasFinder 1457730-1457759 30 NZ_AP014579 Burkholderia sp. RPE67 plasmid p1, complete sequence 334803-334832 7 0.767
NZ_CP006764_5 5.1|1457730|30|NZ_CP006764|CRISPRCasFinder 1457730-1457759 30 NC_016626 Burkholderia sp. YI23 plasmid byi_1p, complete sequence 127860-127889 7 0.767
NZ_CP006764_5 5.1|1457730|30|NZ_CP006764|CRISPRCasFinder 1457730-1457759 30 NC_009622 Sinorhizobium medicae WSM419 plasmid pSMED03, complete sequence 207359-207388 7 0.767
NZ_CP006764_5 5.1|1457730|30|NZ_CP006764|CRISPRCasFinder 1457730-1457759 30 KX853513 Uncultured virus isolate Rctr41k, partial genome 2287-2316 9 0.7

1. spacer 3.1|459980|27|NZ_CP006764|CRISPRCasFinder matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 4, identity: 0.852

gtttttgggttggcgcggccaacccac	CRISPR spacer
gctcttggtttggcgcggccaacctac	Protospacer
*.*.**** ***************.**

2. spacer 3.1|459980|27|NZ_CP006764|CRISPRCasFinder matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 4, identity: 0.852

gtttttgggttggcgcggccaacccac	CRISPR spacer
gctcttggtttggcgcggccaacctac	Protospacer
*.*.**** ***************.**

3. spacer 3.1|459980|27|NZ_CP006764|CRISPRCasFinder matches to NZ_CP053208 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence) position: , mismatch: 6, identity: 0.778

gtttttgggttggcgcggccaacccac	CRISPR spacer
gtttttcggttggcgaggccaacgatt	Protospacer
****** ******** *******   .

4. spacer 5.1|1457730|30|NZ_CP006764|CRISPRCasFinder matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

tgtggac-gcctcacatcgcccggatatcta	CRISPR spacer
-gcgatcttcctcacatcgtccggatatctt	Protospacer
 *.*. *  **********.********** 

5. spacer 5.1|1457730|30|NZ_CP006764|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.767

tgtggac-gcctcacatcgcccggatatcta	CRISPR spacer
-gcgatcttcctcacatcgtccggatatctt	Protospacer
 *.*. *  **********.********** 

6. spacer 5.1|1457730|30|NZ_CP006764|CRISPRCasFinder matches to NC_009622 (Sinorhizobium medicae WSM419 plasmid pSMED03, complete sequence) position: , mismatch: 7, identity: 0.767

tgtggacgcctcacatcgcccggatatcta	CRISPR spacer
cgccgacggctcacatcgcccgggtatgaa	Protospacer
.*. **** **************.***  *

7. spacer 5.1|1457730|30|NZ_CP006764|CRISPRCasFinder matches to KX853513 (Uncultured virus isolate Rctr41k, partial genome) position: , mismatch: 9, identity: 0.7

tgtggacgcctcacatcgcccggatatcta	CRISPR spacer
aaccaccgcctcccatcgcccggatacctc	Protospacer
 .. . ****** *************.** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 89511 : 199457 110 Escherichia_phage(28.0%) transposase NA
DBSCAN-SWA_2 308665 : 371089 76 Corynebacterium_phage(62.5%) portal,capsid,head,holin,transposase,protease,tail,integrase attL 331741:331789|attR 369722:369770
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage