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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP009294 Novosphingobium pentaromativorans US6-1 plasmid pLA1, complete sequence 0 crisprs RT 0 0 1 0
NZ_CP009293 Novosphingobium pentaromativorans US6-1 plasmid pLA4, complete sequence 0 crisprs RT 0 0 0 0
NZ_CP009296 Novosphingobium pentaromativorans US6-1 plasmid pLA2, complete sequence 0 crisprs csa3 0 0 5 0
NZ_CP009292 Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence 0 crisprs csa3 0 0 1 0
NZ_CP009291 Novosphingobium pentaromativorans US6-1 chromosome, complete genome 1 crisprs RT,DinG,csa3,cas3,DEDDh 0 0 10 0
NZ_CP009295 Novosphingobium pentaromativorans US6-1 plasmid pLA5, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP009291
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009291_1 3411593-3411693 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3316 : 37115 34 Stx2-converting_phage(22.22%) transposase,integrase NA
DBSCAN-SWA_2 165089 : 206269 37 Stx2-converting_phage(33.33%) transposase,integrase attL 170715:170774|attR 188033:189328
DBSCAN-SWA_3 830917 : 971415 140 uncultured_Caudovirales_phage(14.29%) portal,terminase,tRNA,head,capsid,tail,transposase,integrase,plate attL 841176:841193|attR 981911:981928
DBSCAN-SWA_4 1118913 : 1132083 9 Brevibacillus_phage(20.0%) integrase attL 1124097:1124110|attR 1133280:1133293
DBSCAN-SWA_5 1632756 : 1692873 52 Stx2-converting_phage(50.0%) transposase,protease,integrase attL 1637509:1637524|attR 1701090:1701105
DBSCAN-SWA_6 1708332 : 1734322 23 Synechococcus_virus(33.33%) integrase attL 1730652:1730691|attR 1734413:1734452
DBSCAN-SWA_7 3109261 : 3152378 48 Bodo_saltans_virus(20.0%) transposase,protease,holin,integrase attL 3103026:3103045|attR 3149679:3149698
DBSCAN-SWA_8 3361535 : 3377269 20 Pseudomonas_phage(30.0%) terminase NA
DBSCAN-SWA_9 3384960 : 3391991 13 Marinobacter_phage(16.67%) integrase attL 3386648:3386667|attR 3397244:3397263
DBSCAN-SWA_10 3818680 : 3826879 17 Streptomyces_phage(14.29%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP009294
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 156094 : 179172 15 Emiliania_huxleyi_virus(33.33%) integrase attL 159874:159890|attR 185750:185766
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP009296
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 1026 1 Leptospira_phage(100.0%) NA NA
DBSCAN-SWA_2 10314 : 19280 9 Escherichia_phage(37.5%) transposase NA
DBSCAN-SWA_3 23382 : 24147 1 Escherichia_phage(100.0%) transposase NA
DBSCAN-SWA_4 46148 : 47021 1 Caulobacter_phage(100.0%) NA NA
DBSCAN-SWA_5 53668 : 56112 4 Vibrio_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_CP009292
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 87257 : 133808 39 Shigella_phage(25.0%) transposase,integrase attL 109779:109795|attR 136008:136024
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage