CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009553	Pandoraea pnomenusa strain DSM 16536 chromosome, complete genome	2 crisprs	csa3,WYL,cas3,DEDDh,DinG	0	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009553_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009553_1

2969358-2969467

Orphan

Consensus_repeat	Method
GGTGATTACGCCCGCCCGGCCAAACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009553_1

>merge|NZ_CP009553|1|2969358-2969467|CRISPRCasFinder
GGTGATTACGCCCGCCCGGCCAAACGCGGCGCCGATGACCGCGCGCCGCGTCGTTTCGACGAAGGTGGTGCACGGGGTGCACGTGGTGATTACGCCCGTCCGGCCAAACG

>NZ_CP009553|1|1|2969358-2969467|CRISPRCasFinder
GGTGATTACGCCCGCCCGGCCAAACG	CGGCGCCGATGACCGCGCGCCGCGTCGTTTCGACGAAGGTGGTGCACGGGGTGCACGT
GGTGATTACGCCCGTCCGGCCAAACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009553.3\|WP_028731033.1\|2971103_2973161_-\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP009553.3\|WP_023596245.1\|2960326_2961109_-\|di-trans,poly-cis-decaprenylcistransferase	unknown	unknown	gnl\|CDD\|237831
NZ_CP009553.3\|WP_038617321.1\|2982149_2982497_+\|ArsC-family-reductase	unknown	unknown	gnl\|CDD\|239333
NZ_CP009553.3\|WP_010803863.1\|2961819_2962533_-\|UMP-kinase	unknown	unknown	gnl\|CDD\|239787
NZ_CP009553.3\|WP_081215033.1\|2973375_2974425_-\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|129010
NZ_CP009553.3\|WP_025249261.1\|2980006_2981209_+\|succinyldiaminopimelate-transaminase	unknown	unknown	gnl\|CDD\|236393
NZ_CP009553.3\|WP_023596259.1\|2981233_2982061_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|236996
NZ_CP009553.3\|WP_023596251.1\|2965902_2968467_+\|[protein-PII]-uridylyltransferase	unknown	unknown	gnl\|CDD\|235101
NZ_CP009553.3\|WP_023596253.1\|2970553_2971087_-\|peptide-deformylase	unknown	unknown	gnl\|CDD\|237227
NZ_CP009553.3\|WP_023596262.1\|2983689_2984586_+\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236988
NZ_CP009553.3\|WP_023596248.1\|2963666_2964416_-\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
NZ_CP009553.3\|WP_023596250.1\|2964935_2965763_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP009553.3\|WP_023596257.1\|2978631_2979618_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP009553.3\|WP_023874153.1\|2974980_2978496_-\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
NZ_CP009553.3\|WP_023596243.1\|2958315_2959515_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NZ_CP009553.3\|WP_023596261.1\|2982501_2983653_+\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237265
NZ_CP009553.3\|WP_023596244.1\|2959517_2960327_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NZ_CP009553.3\|WP_023596246.1\|2961173_2961734_-\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_CP009553.3\|WP_023596242.1\|2956880_2958272_-\|RIP-metalloprotease-RseP	unknown	unknown	gnl\|CDD\|182723
NZ_CP009553.3\|WP_023596247.1\|2962631_2963513_-\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491

Protein	Function_ID	Function_description	E-value
NZ_CP009553.3\|WP_028731033.1\|2971103_2973161_-\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP009553.3\|WP_023596245.1\|2960326_2961109_-\|di-trans,poly-cis-decaprenylcistransferase	gnl\|CDD\|237831	PRK14836, PRK14836, undecaprenyl pyrophosphate synthase; Provisional.	2.38797e-129
NZ_CP009553.3\|WP_038617321.1\|2982149_2982497_+\|ArsC-family-reductase	gnl\|CDD\|239333	cd03035, ArsC_Yffb, Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.	4.02046e-60
NZ_CP009553.3\|WP_010803863.1\|2961819_2962533_-\|UMP-kinase	gnl\|CDD\|239787	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).	1.03432e-144
NZ_CP009553.3\|WP_081215033.1\|2973375_2974425_-\|cell-division-protein-FtsZ	gnl\|CDD\|129010	smart00771, ZipA_C, ZipA, C-terminal domain (FtsZ-binding). C-terminal domain of ZipA, a component of cell division in E.coli. It interacts with the FtsZ protein in one of the initial steps of septum formation. The structure of this domain is composed of three alpha-helices and a beta-sheet consisting of six antiparallel beta-strands.	1.28124e-21
NZ_CP009553.3\|WP_025249261.1\|2980006_2981209_+\|succinyldiaminopimelate-transaminase	gnl\|CDD\|236393	PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional.	0
NZ_CP009553.3\|WP_023596259.1\|2981233_2982061_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|236996	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional.	0
NZ_CP009553.3\|WP_023596251.1\|2965902_2968467_+\|[protein-PII]-uridylyltransferase	gnl\|CDD\|235101	PRK03059, PRK03059, PII uridylyl-transferase; Provisional.	0
NZ_CP009553.3\|WP_023596253.1\|2970553_2971087_-\|peptide-deformylase	gnl\|CDD\|237227	PRK12846, PRK12846, peptide deformylase; Reviewed.	4.05784e-89
NZ_CP009553.3\|WP_023596262.1\|2983689_2984586_+\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	gnl\|CDD\|236988	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase.	1.01062e-180
NZ_CP009553.3\|WP_023596248.1\|2963666_2964416_-\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	3.26834e-166
NZ_CP009553.3\|WP_023596250.1\|2964935_2965763_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	8.9255e-168
NZ_CP009553.3\|WP_023596257.1\|2978631_2979618_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.7061e-07
NZ_CP009553.3\|WP_023874153.1\|2974980_2978496_-\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NZ_CP009553.3\|WP_023596243.1\|2958315_2959515_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_CP009553.3\|WP_023596261.1\|2982501_2983653_+\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237265	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_CP009553.3\|WP_023596244.1\|2959517_2960327_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	3.68058e-48
NZ_CP009553.3\|WP_023596246.1\|2961173_2961734_-\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	7.81866e-109
NZ_CP009553.3\|WP_023596242.1\|2956880_2958272_-\|RIP-metalloprotease-RseP	gnl\|CDD\|182723	PRK10779, PRK10779, sigma E protease regulator RseP.	1.3837e-114
NZ_CP009553.3\|WP_023596247.1\|2962631_2963513_-\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	4.07841e-153

>NZ_CP009553.3|WP_023596251.1|2965902_2968467_+|[protein-PII]-uridylyltransferase
MHARAHAPSPLRQALKERKAELVERFSAHGKIDVLLHGLCQAVDQAMRDAWAECQMPGEFALVAVGGYGRGELYPYSDVDILVLHRGTDGDALTSHVEPFIGFLWDIGVEIGSSVRTVDECLSEAQADITVQTSLLEARLITGDRALFEAFEQRFAVDLDPLAFFRSKQLEIRQRHAKYQDTPYSLEPNCKESPGGLRDLQVILWMTKAAGLGNSWSELFARDLLTDRELKELRRNEQFLKGLRARLHLLARRRQDVLVFDMQTPLAQSLGFDATATKRASEQLMRRYYWAAKAVSQLNTVLLLNVEARLFPQTSGVTRVINERFVEKQGMIEIVDDELYQRHPNAILETFLLYEQVVGVKGLSARTLRALYNARELMNAQWRTDPENRRTFLAILQQPQGITHALRLMNQTSVLGRYLINFRRVVGQMQHDLYHVYTVDQHILMVVRNIRRFAVAEHTHEYPFCSQLIANFDRPWVLTIAALFHDIAKGRGGDHSTLGMVDARRFCTRHGIDKEDTDLIVWLVGEHLTMSTVAQKQDTTDPDVIRRFAEKVGSERRLTALYLLTVADIRGTSPKVWNAWKGKLLEDLYRLTLQVLGGANPDPHSQLKTRKEEALGLLRLYTVPERAQEALWNTLDVAYFLRNDPADVAWQTRHLWRHVDSPAPIVKARPSPIGEGLQVMVYVRDQVDLFARICGYFERKGLSILDAKVHTTSHGFALDSFLLTDPGLDTSYRDIINLVESELVSLLTRAEPLAEPSKGRLPRRSRSFPVTPRVDLRPDERGQYYLLSVSANDRTGLLYAVARVLARHGVSVRTARINTLGERVEDTFLLDGSRLQDNRLQIAVETELLEALEP
>NZ_CP009553.3|WP_023596250.1|2964935_2965763_+|type-I-methionyl-aminopeptidase
MAITLKNAHDIEMMRVACRLASEVLDFITPHVRAGVTTGELDRLCHEYMIKEQGTVPAPLNYQPPGYPPYPKATCISVNDVICHGIPGDKTLKNGDALNIDITVIKDGYFGDTSRMFIVGEGSILARRLAQVTYECMWLGINQVRPGAHLGDIGQAIQTHAEAQGYSVVREYCGHGIGQVFHEDPQILHYGRQGTGLELQAGMIFTIEPMINAGKREIRTMPDQWTVKTRDRSLSAQWEHTVLVTETGHEVLTRSALTPPPPPGSSFVTSFATAA
>NZ_CP009553.3|WP_023596248.1|2963666_2964416_-|30S-ribosomal-protein-S2
MSVTMRQMLEAGVHFGHQTRFWNPKMAPYIFGHRNKIHIINLEKTLPMYQDALKYVRQLAANRGTILFVGTKRQAREIVAEAATRAGMPYVNNRWLGGMLTNFKTLKSSIKKLKDMEQALEAGEQERMSKKEALLFDREMAKLQKSIGGVKEMGGMPDAIFVVDVGYHKIAITEANKLGIPVIAVVDTNHSPDGVDYVIPGNDDSSKAVELYVQGVADAILEGRANAVKEVVEAVRGDGDEFVEVNEEA
>NZ_CP009553.3|WP_023596247.1|2962631_2963513_-|elongation-factor-Ts
MPAITAAMVGELRAKTDAPMMECKKALTEADGDMGRAEEILRVKLGSKASKAASRITAEGVIAAYIDGGKGAVVEINCETDFVSKNDDFLKFANELAKLVAENNPADVAALSALPLEGKTVEQVRTDLIGKIGENMTIRRFQRYETSGKLAAYLHGTRIGVVVEYEGADAEVGKNVAMHIAAMKPVAVSGDQVSPELIEKERKVAAEKAAESGKPAEIVAKMVEGSVQKFLKEVSLFNQAYVKDDKSTVEQMLKANNTTVKSFTMFVVGEGIEKKQDDFAAEVAAQVAAAKQS
>NZ_CP009553.3|WP_010803863.1|2961819_2962533_-|UMP-kinase
MSTPYKRVLLKLSGEALMGDDAFGINRATIERMVGDIAEVVRLGTQLAVVIGGGNIFRGVAGGAAGMDRATADYMGMLATMMNALALQDAMRHAGIEARVQSALRMDQVVEPYIRPRAIRQLEEGKVVIFAAGTGNPFFTTDTAAALRGSEVGAEVVLKATKVDGVYSADPKKDPNAVKYSTISFDEAISKNLQVMDATAFALCRDQKMPVRVFSIVKPGALKHVILGEDEGTLVHV
>NZ_CP009553.3|WP_023596246.1|2961173_2961734_-|ribosome-recycling-factor
MSVADVKKNVEQKMKSSIESFKNNLAKIRTGRAHVGLLDHVQVDYYGSMVPIAQVANVNLVDARTIGVQPWEKNMVAKVEKAIRESDLGLNPATQGDLIRVPMPQLTEERRREMTKLVKSEGETAKVAVRNLRRDANEQLKKLVKDKEISEDDERRGGDEVQKFTDKFVAEIDELVKQKEADIMTV
>NZ_CP009553.3|WP_023596245.1|2960326_2961109_-|di-trans,poly-cis-decaprenylcistransferase
MGFLSSTLSVPETASIPRHVAIVMDGNGRWATSRKLPRVAGHKRGVDAVREAVTACAELGVEYLTLFAFSSENWRRPQDEVSTLMQLFILALEREVGKLHNNGIRLRVVGALEAFEPRIQELVRRAEERTKDNKGLTLTIAANYGGRWDILQAARKLAAARVAQGGAAALETSFAEEDLAPYLSMAYAPEPDLFIRTGGDQRISNFLLWQLAYTELYFTEEFWPDFNANTLKRAVAEFQQRERRFGRTSAQVQNPSGQSA
>NZ_CP009553.3|WP_023596244.1|2959517_2960327_-|phosphatidate-cytidylyltransferase
MLKTRVITAVVLLAILLPVIFVGTPAQFACLAAVIVAAAGWEWGRLVGLNGTGAIFYGALALLGVGLTWAGGWTLSSIWLKPAAVFWVLAGPYTLARKPATQGAWRGLLLVAGPVLLIAAWQALCLARERGVAFLLSVLVIVWIADTGAYFAGRAFGRRKLAPSISPGKSWEGAIGGWLLVLVAAAAVLASDLQAPTIVSHLASSLGPGLGALALTALVAFSVVGDLFESQLKRQAGVKDSSALLPGHGGVLDRIDALLPVLPLALLFV
>NZ_CP009553.3|WP_023596243.1|2958315_2959515_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MSQRLSILGSTGSIGVSTLDVVGRHPDRFSVYALSAHRNLDRLFEQCVAHRPKVAVVADADGAGVLAARLADAGLKIEVTHGPRALVEIAEASEPTMVVAAIVGAAGLQSTLAAARAGKRILLANKESLVLSGALFMATAERAGATLLPLDSEHNAIFQCLPQLAGEHGISTRGVEKLVLTASGGPFRERELASLENVTPDEACAHPNWVMGRKISVDSASMMNKGLEVIEAHWLFNMPPERIEVLIHPQSVIHSMVTYTDGSTLAQLGNPDMRTPIAHALAFPDRVTSGVAGLNLADIGKLTFEAPDLRRFPCLRLAFDALHRGGTAGALLNAANEIAVAAFLEGRIRFTAIAQVVEQVLDAVAVGEATSLDVVLEADRRARELAAAIVAKLPAPASS
>NZ_CP009553.3|WP_023596242.1|2956880_2958272_-|RIP-metalloprotease-RseP
MTLLSTLLAFAVAIGVLVVFHELGHYSVARLCGVKVLRFSVGFGTPLLKWTMGRDRTEWTVCALPLGGYVRMLDERDDTQIVAPEDRDRAFNRQSVYKRFAIVAAGPVANFLLAIALYAGLNLVGVTEPVARVAPPAAGTLAARAGLAGGELITGVRENGTSSDEAVGDDMPVRSWEDLRWRLVDPMIDGQRVTLIARTRDGRAEYTLDAAGQHFDADGEQDFMQRLGLVPSARVKVGQLIAGGAAGAAGLRVGDEITAVDGSAVTSAKGLVDAVRAHPGKPMTFTVRRDGALMNVTLTPAAEVDSAEAGGARVGKIGAALASQVDSVTVRYGLFEAIGRGAQRTWDVTAFSVRMFGKMITGQASLKNLSGPVTIADYAGRSARLGLDYFVAFLALVSISLGVLNLLPIPVLDGGYLLYYAVEAITGRAVSERWQGVLQRVGIVCILALSAVALFNDMSKLLH
>NZ_CP009553.3|WP_023596253.1|2970553_2971087_-|peptide-deformylase
MIRDILKMGDPRLLRLAKAVEHFDTPELHELVADMFDTMKHANGAGLAAPQIGVDLQVVIFGFEHNERYPDAPEVPETVLINPVITPLTQDMEEGWEGCLSVPGLRGMVNRYSMLRYEGFDQYGRVIDRIAEGFHARVVQHECDHLIGKLYPMRITDFSKFGFTEILFPGLDPKSDD
>NZ_CP009553.3|WP_028731033.1|2971103_2973161_-|NAD-dependent-DNA-ligase-LigA
MSDDATVGAQRAAELRRELARHNRAYYEEDAPLIPDAEYDRLFAELVALEARFPELQRADSPTQRVGGKPVEGFAPVVHRVPMLSLNNGFADEDVEAFDRRVTDGLRDGNAAGASGDLFGAPVEYAAELKFDGLAIALRYERGVLVQAATRGDGTTGEDVTANIRTIKKIPLRLETDDPPEVLEVRGEVLMFRADFDKLNRMQEAAGEKVFVNPRNAAAGSLRQLDSRITARRPLSFFAYGIGELVGAPMPQTHSALLDWYVTLGIPVNDRREVVQGAHGLLAFYRTVGEARPSLPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTTLLDIEVQVGRTGAITPVARLAPVFVGGATVTNATLHNEDEIRRKDVMIGDTVIVRRAGDVIPEVVGSVLERRPADARAFVMPTACPVCGSAIEKLPDEVIARCTGGLICAAQRKQALLHFAQRRALDIEGLGDKLVEQLVDQHIIRTPADLFKLGVAKLAALDRMADKSAANLVAALEAARHTTLARFIFALGIRHVGEATAKDLARHFGTLDNVMAASTEELLAVPDVGPIVAQSIANFFGEPHNVEVIEQLRAAGVTWPESEPAAAAPLPLAGKTFVLTGTLPTLSRDEAKSMLEEKGAKVAGSVSAKTDYVVAGADAGSKLAKAESLGVPVLDEDAMRAMLAAL
>NZ_CP009553.3|WP_081215033.1|2973375_2974425_-|cell-division-protein-FtsZ
MDAELAADDTVDAAPAGAAASVAGAPDAEPVAKTDGADAAADTVATSDTAEVPASTASTVAPAAPAAATRQATPSGPPAVIDERIDCIVALPLANVIAAERLMPLTMRMRRAGSKPVNIEGRADEHSPWELIRTGGRYHQLRMAVQLANRAGALNEVEFSEFSNLVQTLADAVDALPELPDMMETVARARELDSFAAQCDAQLSVNVLSDGAPWSANYVQAVATQDGLLLSRDGMRFVKLDTRQNPVFMLQFGDTNFLRDDLTYKGGDLITMLLDVPVADEDLLPFRLMCDYARSIGQRIGGRVVDDQRRPLSDAALQNVDKQLLKLYERLEARGLPAGSPVTRRLFSQ
>NZ_CP009553.3|WP_023874153.1|2974980_2978496_-|chromosome-segregation-protein-SMC
MRLTSIKLAGFKSFVDPTNFAVPGQLVGIVGPNGCGKSNIIDAVRWVLGESRASELRGESMQDVIFNGSTARKQASRASVELVFDNSAGRAAGQWSQYAEIAVKRVLTRDGTSSYYINNLPARRRDIQDIFLGTGLGPRAYAIIGQGMISRIIEAKPEELRVFLEEAAGVSKYKERRRETENRLQDTRENLTRVEDILRELGTNLEKLESQAVVANRFKDLQRDGEEKQQLLWLLRKNEAQNEQERQQRAIESAQVDLEAQMARLRGSESDLETLRAAHYTATDAVQAAQSAMYEANSEVSRLEAEIRYVVESRNRVQAQLAALTSQREQWQARCAQSEEALALAEEELVIAEERAATAQDQAAEQNDALPALESRWRDAQNLLNEQRSEIAQVEQSLKLEAAHQRNADQALQQLQQRQERLQGEARGLDKPDEAELEMQRAELAEHQAMLEDAQAELAEAQERLPRLEAERAEAQARVQSEAATIAQLEARLSALKQLQESVQTEGKVQPWLDKHELAQLPRLWKKLHIEPGWENALESVLRERLAALEISNLDWVKAFASDAPPAKLAFYSPPPAARPPEAPASLRPLLSLLRIDDPGLRAVLQEWLGHTYVADDLAQAMTARAQLPEGASIVVKAGHQVTRVGVQLYAADSEQAGLLARQQEIENLGKQLRAQALLSDEAKSAAVRAEAAYSQAAQSLTEVRGRAERATQRVHALQLDVLKLTQAYERYNARSSQIDEELREIAAQIEEQLAMRAESEANFEHSDARLAELQATFEDGQLEFESLDSQLSDARNRARELERLAQDATYGQKGIASKIDEHRRSIQTALEQAERLVVSIEQAQAELAQITEQTAENGLQDALELRAEKEEILGAARMELEALTQKLRQSDEERLAAERGLQPLRDRITELQLKEQAARLNREQFAEQLTTAQVDEEALSAKLTADMKPSYLQGEVTRINNAINALGPVNMAALEELETARERKVFLDAQSADLNDAIETLEGAIRKIDEETRVLLQGTFDEVNKHFGELFPMLFGGGQAKLIMTGDEILDAGVQVMAQPPGKKNSTIHLLSGGEKALTAIALVFGMFQLNPAPFCLLDEVDAPLDDANTERYAKMVARMSDRTQFVFISHNKIAMEMANQLIGVTMQEQGVSRIVAVDMESAINLAEIA
>NZ_CP009553.3|WP_023596257.1|2978631_2979618_-|DMT-family-transporter
MTVAGNGAHGPASTSGVSLRTRAAPALAILIGSSVWGLAWFPYRVLAQWGVAAIPAQICTAGVALLLLTLVYRRSLDTLRWSWLLVGVAFAGGTTNVAFVWGTTHGHVMRVLLLFYLTPVWTALFAHWLLGERVGLRGGGLIALALGGAGLMLWSPELGWPVPNNAGEWAGAVAGAAFALNNVLLRRVSQALPDVRAEMRSWTLYLGCVVGGLLVMPFDGGVQSGHAAISALASDAGAASVALALGCTIALTNVIVQFGLARVPANQAALIMLFEIVVAAISSWWLASEGLGAREIAGGLCIVAAGVLSGILPDPGRCKSATAGDAMV
>NZ_CP009553.3|WP_025249261.1|2980006_2981209_+|succinyldiaminopimelate-transaminase
MNPLLDKLQPYPFERLKSLVADVTPAAAYKAVSFGIGEPKHPTPQFIKEALIEGLGGLSNYPATAGGEPLRAAIAQWLERRYALPNVNPATEVLPVTGSREALFSFAQAVVDGSKPGARVMCPNPFYQIYEGATLLAGATPYYVDSDPARNFAPDYDSVPADVWRDVQLVYLCSPGNPTGAVLGLADWKRLFELSDEYGFVIASDECYSEIYFDEERAPLGGLAAAHQLGRGFERLVVFSSLSKRSNVPGMRSGFVAGDAAILKKFLLYRTYHGCAMSPAVQAASVAAWNDEAHVRLNRSKYLKKFQTVTPMLAEVLDVRLPDAGFYLWAKVDARTGMSDTEFTRRLLAQYNVAVLPGSYLGRAAHGANPGEHYVRIALVADVDECTEGAQRIVQFCQSL
>NZ_CP009553.3|WP_023596259.1|2981233_2982061_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MSQQLQTTIDQAWENRAEISAKSAPADVREAVAHVIAELDKGALRVAQKHDGKWIVNQWIKKAVLLSFRLEDNAVMPAGGFSQFYDKVPSKFASYTAEDFARGGFRVVPPAVARRGSFIGKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVHYGRVPAGSVVVPGNLPSKDGKYSLYCAVIVKKVDAQTRAKTAINDLLRGE
>NZ_CP009553.3|WP_038617321.1|2982149_2982497_+|ArsC-family-reductase
MTAVLYGIPNCDTVKKARTWLDEHGVAYEFHDFKKAGVNDALLGTWLAQVPLATLLNRKGTTWRKLSPEQQAAAADASAARALMIENPSLIKRPVLVADGKVSVGFTPNSYASRF
>NZ_CP009553.3|WP_023596261.1|2982501_2983653_+|succinyl-diaminopimelate-desuccinylase
MTSSQGATLALTEQLIARHSVTPEDRDCQTILARRLEAIGFACETIASNGVTNLWALKRGTRGTDGKLLVFAGHTDVVPTGPLDQWHSDPFAPTHRDGMLYGRGAADMKTSLAAFVVASEEFVARHPAHEGSIGFLLTSDEEGPATDGTVKVVEALSARGERLDYCVVGEPTSSQRLGDMVKNGRRGSMSGKLVIKGVQGHIAYPHLAKNPTHLFAPALAELTQTVWDNGNEYFPPTTWQISNIHAGTGATNVIPGELTVMFNFRFSTASTSDGLQKRVHELLDRHGLTYTLDWSISGQPFLTPRGDLSQALSSAIREETGLETELSTTGGTSDGRFIARICPQVIEFGPCNASIHKIDEHIAVADIEPLKNIYRGVLARLVA
>NZ_CP009553.3|WP_023596262.1|2983689_2984586_+|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase
MTPQATHPFRTLRDLLRYAVSRFTEAELAFGHGTATAYDEAAYLLLHTLHLPIDTLDPFLDARLLPEEIERALSVINRRAGERVPASYITNEAWMHGHRFYVDERVIVPRSFVGELLEDALQPWVDHPDDVADVLELCTGSGCLAILAAETFPAARIDAVDISADALAVAAINVADYGLEDRIALHHGDLYAPLPKGKRYEVIITNPPYVNEGSMQVLPAEYLHEPRLALAGGDDGMDVVRRIIAGAREHLTDNGVLVVEIGNERHFVEAAFPDLPMTWLATSAGDDMVFLVQAADLS

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Crispr_ID: NZ_CP009553_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009553_2

3068633-3068772

Orphan

Consensus_repeat	Method
GCCTTCTCGGCTTCGGCCTCGGCCTTGGCGGCCGCAGCCTT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP009553_2

>merge|NZ_CP009553|2|3068633-3068772|PILER-CR
GCCTGCTCGCGCTCGGCCTCGGCCTTGGCGGCGGCAGCCTTGTCGGCATCGGCCTTCTCGGCTTCGGCCTTGGCAGCCTTTTCGGCATCCACGGTGGCCGCCTTCTCGGCTTCGGCGTCGGCCTTGGCTTCCGCCGCCTT

>NZ_CP009553|2|1|3068633-3068772|PILER-CR
GCCTGCTCGCGCTCGGCCTCGGCCTTGGCGGCGGCAGCCTT	GTCGGCATCG
GCCTTCTCGGCTTCGGCCTTGGCAGCCTTTTCGGCATCCAC	GGTGGCCGCCTTCTCGGCTTCGGCG
TCGGCCTTGGCTTCCGCCGCCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009553.3\|WP_038617261.1\|3077807_3078824_+\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176214
NZ_CP009553.3\|WP_048806320.1\|3064737_3065730_-\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|234986
NZ_CP009553.3\|WP_023596327.1\|3055319_3057143_-\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NZ_CP009553.3\|WP_038617278.1\|3054067_3055180_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|235533
NZ_CP009553.3\|WP_081326890.1\|3071774_3073565_-\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP009553.3\|WP_023874100.1\|3075269_3076007_+\|fumarate/nitrate-reduction-transcriptional-regulator-Fnr	unknown	unknown	gnl\|CDD\|183004
NZ_CP009553.3\|WP_038617275.1\|3062567_3063797_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009553.3\|WP_023596328.1\|3057453_3057963_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP009553.3\|WP_023874099.1\|3076281_3076704_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|379209
NZ_CP009553.3\|WP_038617266.1\|3073716_3074928_-\|SMC-Scp-complex-subunit-ScpB	unknown	unknown	gnl\|CDD\|224304
NZ_CP009553.3\|WP_024788532.1\|3076748_3077669_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP009553.3\|WP_023596345.1\|3078899_3079739_-\|competence/damage-inducible-protein-A	unknown	unknown	gnl\|CDD\|223986
NZ_CP009553.3\|WP_023596331.1\|3060933_3062484_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP009553.3\|WP_023874095.1\|3079852_3080767_-\|EI24-domain-containing-protein	unknown	unknown	gnl\|CDD\|377798
NZ_CP009553.3\|WP_023596337.1\|3069404_3070880_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP009553.3\|WP_025249283.1\|3065869_3066283_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP009553.3\|WP_023596338.1\|3070876_3071335_-\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP009553.3\|WP_038617272.1\|3064092_3064587_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NZ_CP009553.3\|WP_023596330.1\|3059663_3060896_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|185090
NZ_CP009553.3\|WP_023596329.1\|3058081_3059599_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830

Protein	Function_ID	Function_description	E-value
NZ_CP009553.3\|WP_038617261.1\|3077807_3078824_+\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176214	cd08252, AL_MDR, Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0
NZ_CP009553.3\|WP_048806320.1\|3064737_3065730_-\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|234986	PRK01851, truB, tRNA pseudouridine synthase B; Provisional.	3.13679e-166
NZ_CP009553.3\|WP_023596327.1\|3055319_3057143_-\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NZ_CP009553.3\|WP_038617278.1\|3054067_3055180_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|235533	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional.	7.91816e-167
NZ_CP009553.3\|WP_081326890.1\|3071774_3073565_-\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	3.99758e-87
NZ_CP009553.3\|WP_023874100.1\|3075269_3076007_+\|fumarate/nitrate-reduction-transcriptional-regulator-Fnr	gnl\|CDD\|183004	PRK11161, PRK11161, fumarate/nitrate reduction transcriptional regulator Fnr.	1.39052e-78
NZ_CP009553.3\|WP_023596345.1\|3078899_3079739_-\|competence/damage-inducible-protein-A	gnl\|CDD\|223986	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only].	1.13784e-70
NZ_CP009553.3\|WP_023596328.1\|3057453_3057963_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	5.70719e-20
NZ_CP009553.3\|WP_023874099.1\|3076281_3076704_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|379209	pfam13474, SnoaL_3, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	1.70479e-18
NZ_CP009553.3\|WP_038617266.1\|3073716_3074928_-\|SMC-Scp-complex-subunit-ScpB	gnl\|CDD\|224304	COG1386, scpB, Chromosome segregation and condensation protein B [DNA replication, recombination and repair].	9.3987e-57
NZ_CP009553.3\|WP_024788532.1\|3076748_3077669_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.59711e-89
NZ_CP009553.3\|WP_023874095.1\|3079852_3080767_-\|EI24-domain-containing-protein	gnl\|CDD\|377798	pfam07264, EI24, Etoposide-induced protein 2.4 (EI24). This family contains a number of eukaryotic etoposide-induced 2.4 (EI24) proteins approximately 350 residues long as well as bacterial CysZ proteins (formerly known as DUF540). In cells treated with the cytotoxic drug etoposide, EI24 is induced by p53. It has been suggested to play an important role in negative cell growth control.	1.49393e-14
NZ_CP009553.3\|WP_023596331.1\|3060933_3062484_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	6.64339e-161
NZ_CP009553.3\|WP_023596337.1\|3069404_3070880_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
NZ_CP009553.3\|WP_025249283.1\|3065869_3066283_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	4.67882e-51
NZ_CP009553.3\|WP_023596338.1\|3070876_3071335_-\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	8.41857e-60
NZ_CP009553.3\|WP_038617272.1\|3064092_3064587_+\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	6.0037e-49
NZ_CP009553.3\|WP_023596330.1\|3059663_3060896_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|185090	PRK15136, PRK15136, multidrug efflux MFS transporter periplasmic adaptor subunit EmrA.	1.82802e-161
NZ_CP009553.3\|WP_023596329.1\|3058081_3059599_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	9.97041e-107

>NZ_CP009553.3|WP_025249283.1|3065869_3066283_-|30S-ribosome-binding-factor-RbfA
MAKKRGVPGRNLRINDQIQRDLSELIQREVKDPRIGLVTLQSVEVTPDYAHAKVFYTTLTGDPKATGEALNEAAGYLRNLLFKRLHIHTVPTLHFHFDQSIERAIEMSRLIDTANATRARDEAGEGSDEGSKDGDEK
>NZ_CP009553.3|WP_048806320.1|3064737_3065730_-|tRNA-pseudouridine(55)-synthase-TruB
MTDPRSQAPRQKLPRFALDGVLLLDKPLGLSSNDALIKAKRLLQALKAGHTGTLDPLATGLLPLCFGEATKFSQDLLEADKTYEAHVRLGETTTTGDAEGEVLQTRPVTVDDAAIRAILPRFMGRISQVPPMYSALKRDGKPLYEYARAGQTLEREAREVTIHALALTQSALPHTNEFTFRVTCSKGTYVRTLAEDIGEALGCGAHLRGLRRTAVGPLTLDGAVTLEDLSALDHAQRVAKLAPVDALLKTLPAIMLDETLARRFSHGQRLRLDDIRCPTPLRAYAAAHGDIEVKVYTEATSEATSRLLGVARLDGEALLTPQRLLKTQSS
>NZ_CP009553.3|WP_038617272.1|3064092_3064587_+|acyl-CoA-thioesterase
MTVPQNPNDRSEITFRFLAEPAAVNFGGKVHGGSLMKWIDEVAYACAATWSGRYCVTVSVGNIRFRRPILVGNLVELRARIVATGRTSMHIHVSVHAGDPKWGELRQTTDCLMVFVAVDESNHPVSVPSFEPKTEEQKALAKYAMDVKAALDAIVELKPENVAG
>NZ_CP009553.3|WP_038617275.1|3062567_3063797_-|hypothetical-protein
MITCAGSAGRVVPAMPPFLLPDRPLADARPSESNGHAEVDIEVQRVSCIQAAEACHAASAQGGAPIERIGDDTHAQLRALRLRARDAREAARTHDEMRVLIGGESKDGAHDRSSGKTPHEAVCLPPASGMSRASASVPDGATPPVVEPPGYACPVRSGVLLAHAASLGVQMVSVASPYLAPDVFAGLAGARVCERVRSSTTFAGRGGRCKVLRIGRAIFTPGMMVAPYFALLALGDLICWGVEFHRPGTLPFQGDSLANLMYWLNARGAFERVHAALGANDAAILAAVKRVRVLERMVAKLRTALVAHDDPVWQKALAARIRLLSTGVFVWLIARLPFSDDVSELPKGLSEFYQWLERLGAGTKLAAALSGSLVSSRPSAEADASLEDELVCVCVDPRDIARTVEADSQ
>NZ_CP009553.3|WP_023596331.1|3060933_3062484_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MANQNAPGPLTGGQLVLGTIALSLATFMNVLDTSIANVSIPAISGDLGVSSSQGTWVITSFAVANAISVPLTGWLTERFGAVRLFITSILLFVLASWLCGMAPTLEFLLAARVLQGAVAGPMIPLSQSLLLSSYPPAKSSMALALWGMTTLVAPVMGPILGGWISDNYHWPWIFYINIPVGIAAAYVTWMIYAKRETPTQRKPIDTVGLALLVLWVGSLQVMLDKGKELDWFNSSTIVILALVALVSFCFFVIWEITEQHPVVDLTLFKRINFTGGVVAISVGYGLFFGNLVILPQWLQIYLGYTATEAGLVMAPVGLFAIILSPVIGKFLPKLDARWVVTVSFLLFALVFLMRSHFNTLVDTRTLMIPTFLQGVPMSMFFIPLTAIILSGLPPHRIPAAAGLSNFVRITCGAVGTSIATTVWDNRITLHHAQLTEHLTPYDPTFNGSVQTLNQLGMTTPQANGFIDRLVTQQSAMLGANDIFWISAVLFVLMIVMVWVTRPIRGGGGADAAAGAH
>NZ_CP009553.3|WP_023596330.1|3059663_3060896_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MSENQQQAPAQPAQGNGKRRRMMLTLTAVIAIAAIGYGAYYALYARYYEDTDDAYVAGNVVQITPQVAGTVTGVKVDDTQMVKAGQPLVTLDQTDARVALLQAEANLAQTVRQVRTYFVNNDAYAATVAMRESELAKAQADVKRREMAIATGAVSREELAHAQDAVKSARAALEQARAQLVSNKALTDKTSVTTHPNVQQAAAKVRAAYLDYARTSIPAPVDGYVAKRSVQVGQRVATGAPLMALVPLNQVWVDANFKEVQIAHMRVGQPVTLTADVYGSSVEYKGTVAGFSAGTGSAFSLLPAQNATGNWIKVVQRLPVRIALDPKQLQAHPLRVGLSMQVKVNVRNTDGKELGEAPALPVYSTDVYDKVGHDADDIVAKIITENAGPAGSASGGASDTRNQPARARPL
>NZ_CP009553.3|WP_023596329.1|3058081_3059599_+|efflux-transporter-outer-membrane-subunit
MKAASPFLPRQRVRSAISALSLAVVTLGFAGCANFAGIHSDKQISTPDQYQTQRSLPSEGGQWPGTDWAQRFGDPQLVSLIDEALAGNPDLAMAAARLKAAQAQTEGAAAALLPSVGFQGDVYREKFTENTIYPPGYGGTWFTQGDLTASLSWELDLWGKNRAARAQATSAERAEEAEDQEVRLALATAVARSYNQLAQQYALHDVLERVARQRENLGKLTADRVRAGLDTQVEQKQADSNTADIQTQIAQLDGQILLTRHQLGVLLGKGPDRGLDISRPTLAKLPTPALPDNLPLALLGRRPDIVSARWGVEAQLKGVDVAKARFYPDVNLNAAFGFSTFGLGKLLNASSQTIQAGPVISLPIFDGGRLRANLKGQYAAYESAVANYDSTLNKALGDIADRMSSIRSADKQMVSQRVAQDAAQRAYDLAVDRYKAGLTPQLTVLTAESSLLAQEQARVNIDSARRDQQIGLIKALGGGFDAQAAGLVVGQAPPAKAEDGAMQTH
>NZ_CP009553.3|WP_023596328.1|3057453_3057963_+|MarR-family-transcriptional-regulator
MSEPPVSVSPTAPTSQPDAPHGDPPRNAYDIDDSLGYLVARVRQLILAELTKETSQYGLTSTQATMLYKVATGKSKTAADLARDYCIDASAVTRLLDRLEAHGLLERERSKMDRRTVNLSATEAGHAMADRMPDIFVRAADHLLQGFTPEEVGFLKSLLRRVIVNGEAG
>NZ_CP009553.3|WP_023596327.1|3055319_3057143_-|translational-GTPase-TypA
MTRALRNIAIIAHVDHGKTTLVDQLLRQSGTFRENQQVAERVMDSNDIEKERGITILAKNCAVEYEGTHINIVDTPGHADFGGEVERVLSMVDSVLLVVDAVEGPMPQTRFVTRKALGLGLKPIVVVNKIDRPGARPDWVIDQTFDLMDKLGATNEQLDFPVVYASALNGFASLDSNVREGTMKPLFDAILEHVPVRDADPDAPLQLQISSLDYSTFVGRIGIGRITRGRIKPGQQVVMRSGPDGEILKRKINQVLTFKGLERVMSEDGAEAGDIVLINGIEDVGIGATICDVDTPEALPLLTVDEPTLTMNFCVNTSPLAGREGKFVTSRQIRDRLDKELNHNVALRVKDTDEDSVFEVSGRGELHLTILIENMRREGYELAVSRPRVVLKEIDGVKHEPYEMLTIDLEDEHQGAVMEEIGRRKGEMLDMVSDGRGRTRLEYRIPARGLIGFQGDFLSMTRGTGLMSHIFDAYAPLKDGSLGERRNGVLISQDDGAAVAYALWKLQDRGRMFVSPGDALYEGMIIGIHSRDNDLVVNPIKGKQLTNVRASGTDEAVRLVPPIAMSLEYAVEFIDDDELVEVTPQTIRLRKRFLKEHERKRASREEK
>NZ_CP009553.3|WP_038617278.1|3054067_3055180_-|enoyl-CoA-hydratase/isomerase-family-protein
MTEFIRTEIRGRIGFITLTRPKALNALSHDMIRAMASALDAWRDDPKVLGVVLQGEGEKGLCAGGDIRYFHEAVSAGRTDIMDFFTDEYRLNYAIATYPKPYIALMDGVVMGGGMGISQGAALRIVTEATRMAMPETAIGLFPDVGGGYFLANLAGHLGEYLGTTGIVFGAVDACEIGLADVVLPRALLPVLCDRLANGAWGDSDAVLDAARTFVRESLPPAGLAPGKLAPLRDVIDSHFGLADMPTILKSLQREARCEYSGWAQETEDLLRAKRSPLMVCVTLEQVRRARHMPLADDLREEWLMMRSVFNLDGRSGAEGVEGIRAMVVDKDHKPRWQHERIEDVKPADIARFFDGERQGADHPLRDLGQ
>NZ_CP009553.3|WP_023596337.1|3069404_3070880_-|transcription-termination/antitermination-protein-NusA
MSREVLLLVDALAREKNVDKDVVFGALEAALASATKKRYTEDVDIRVHIDRESGEHESFRRWLVVPDEAGLQEPDKQILSFEAKEENPSVEIGEFIEEPVESVEFGRIGAQAAKQVILQRIRDAEREQILSDFLERGEKIMTGTVKRLDKGNLIVESGRVEALLRRDQLIPKENLRIGDRVRAFIVKVDRTARGPQIELSRTAPEFLIELFGMEVPEIEQGLLEIKSAARDPGVRAKIAVVAYDKRIDPIGTCVGIRGTRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEEKHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAEKQNEERGTLRTLFMQRLDVDEEVADILIEEGFSSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTQAIATEEKVEGVALDLKSLDGMTSELLAKLAEHEIQTRDDLAELAVDELTEMTGVDEEAAKALIMKAREHWFQ
>NZ_CP009553.3|WP_023596338.1|3070876_3071335_-|ribosome-maturation-factor-RimP
MQLPELIETTVEGLGYELVDLERAGGGLLRVYIDKPEGITIDDCETVSRQLSHVLMVENVNYDRLEVSSPGLDRPLRKLRDFERFAGTEVSLTLRVPLEGRKQFRGILQAPQGENLSLEFEGKGGPALLEFTLADIDRARLVPQIDFRSRKR
>NZ_CP009553.3|WP_081326890.1|3071774_3073565_-|rRNA-pseudouridine-synthase
MLKQNEESQDLHARDAGAEARAPEGEGGDDKASRRGLRRGPRSLIARRRAAQQAKREGDDSGTGEFAASDASQGVPSGETSHSQAPVADGAPAAAQARGRQGARKPRGGKQRDGASPAAKPAQASGAATGGEPAGKAQPGDGKGRGRKGAAAVGGRSAGAGKVSRGGRGGKGGKNGDDDLFAFVTSGGFDNDDADGDAKAAAKRGRRPADRRVLSPDDEAPKLHKVLAEAGMGSRREMEELILAGRVSVNAEPAHIGQRILPTDQVRINGKLVKRRITSKPPRVLLYHKPAGEIVSHADPEGRASVFDRLPPMKTAKWLAVGRLDFNTEGLLILTTSGDLANRFMHPRYGIEREYAVRTVGQLSESSRQQLLRGIELDDGQANFLRLQDGGGEGSNHWYHVALTEGRNREVRRMFDAAGLMVSRLIRTRYGPLTLPRGLKRGRYEELDDAQVRSLFAAVGMKMPGASADDKGGKPGRGGKAGAVKEPRRQPDPMQTALGVFSREPGQSRRPRANPLTAFVGPSGGYPGQTSSPRGEGRRFGGGNAAGGGGYSGQPRGNGNGNVNGNRSRGGNRAGGGNYGGGNSGNRGNRGGNRSR
>NZ_CP009553.3|WP_038617266.1|3073716_3074928_-|SMC-Scp-complex-subunit-ScpB
MNTQEAKLVLETALICAQEPLKVGDLRKLFNDAVSGDTVRALLEEIRMQWDGRGVELVALATGWRFQSRPRMREYLDRLNPEKPPKYSRAVMETLAIIAYRQPVTRGDIEEIRGVTVNTQIIKQLEDRGWIEVIGHRDVPGRPGLYATTKDFLDDLGLRALDALPPLEDPAAQAQIDLLAQQNIEFGERAEGEAGEDVASDDAPMADAEALARLAQDRADNLPLAQGLPEGQRPTSGDDAVTEEALLDAVMAEGDAPADAAYSGESEAALANADGDVGAIPPDAEELVPAGRVSEQVAAPQDDASLGEGGQQVRGRQSVEEFSEDLGSAAAEGDDPPQDAQYLASEANDAPTQADDPAAPVTQEVSPRAVDPAANEAATGQPMSGGMDDDENDGDDKTLVTGT
>NZ_CP009553.3|WP_023874100.1|3075269_3076007_+|fumarate/nitrate-reduction-transcriptional-regulator-Fnr
MTTEIGRIPVVQPRCSTCSLGQFCLPVGIPEAELERLDALVSERRRLKKGEVLYHANDDLSAVYGIRFGSLKSCVTAPDGREQVVGFHLQGELIGLDAVADSHHPSTAIALEDSELCIARFGELETLSRQVPSLQRQLHRLMSQEIRNEHQQLLALGTMRAEERLAVFLHNLSERLSARGYAANEFVLRMSREEIGSFLGLKLETVSRLFSRFAQNGMIEIRQRHVKIIDAAALRELAGVTGIHC
>NZ_CP009553.3|WP_023874099.1|3076281_3076704_+|nuclear-transport-factor-2-family-protein
MFLSPEDAEHAYYEALRTGDADALMDVWSEDEEVVCIHPSGPRHVGPAAVRSSWRQILANGGLQVSVSHLQVANNPLCAVHNVLEQIQVESHPEARYAFVLATNVYLKEADGWRLVLHHASPAIGHEDSAAPLARTHHLH
>NZ_CP009553.3|WP_024788532.1|3076748_3077669_-|LysR-family-transcriptional-regulator
MALDLDTVALFVRVAALGNVSAAGRERGLSPATASTRLAQLEARLGARLLHRTTRRVALTQEGEMFLAQAQTLLAAEAQAFASVGQGRAAPQGRLRVSCSSSFGRQHVSPALPAFLDRYPGISLDFRLTDRVVDLLEEGVDLAIRVGALRDSTLVARKLASNRRTLCASPAYLAAHGTPKHPGDLASHECLILAEQRDWRFVTPGGELNVRVGGRLVSDNGEVLRDAVLAGMGIALKSTWDVGVHLQRGDLVAVLPAYPLAEEVAIWGVYPSRAFVPPKTHALIEFLQARFGPGPVPYWDARPDAS
>NZ_CP009553.3|WP_038617261.1|3077807_3078824_+|zinc-binding-alcohol-dehydrogenase-family-protein
MKAVGLTRYLPIDDPESLVDIELPTPTPAGRDILVKVEAISVNPVDTKVRAPKAKVDDTPRVLGWDAAGTVAAVGPDATLFRVGDPVYYAGSITRAGANSEFHLVDERIVGHMPTSLDFVSAAALPLTTITAWEALFDRLGVAPDGSDEGKSVLVVGGAGGVGSIAIQLARRVARLTVVATASRPASADWCRQLGAQHVIDHYQDIPAQLLAAGVPQVDFVLCLNDTDEHFPALAQAVAPQGKICSIVENARPLDVGLLKNKSATFVWEFMFTRAMYETPDMIAQHKLLTEVARLVDAGTLRTTLGEVIGPINAVNLRRAHAQLEGGRTIGKLVLSGF
>NZ_CP009553.3|WP_023596345.1|3078899_3079739_-|competence/damage-inducible-protein-A
MAVGIIIIGDEILSGRRQDKHLPKLIELLTERGMQLGWAEYVGDDPARITATLQRTFASDDIVFVTGGIGATPDDHTRQCAAAALNVPLVLTPEAEALIMERIADTSPDGRADMTQPDNRHRLKMGEFPVGARVLPNPYNKIPGFSIERHHFMPGFPVMAWPMMAWVLDTCYADLHHLTRHAERSVLVFGLAESTLTPLMEAIEAEYPGVKVFSLPSVGDAQRGPVYARRHIDLGVKGEPALVGAAFERLLAGVSALNGEIVHPADAAALPEGTAPSAQ
>NZ_CP009553.3|WP_023874095.1|3079852_3080767_-|EI24-domain-containing-protein
MNDILRALGRALVSLLHPRMLWLTAMPFVVSGLIWGAVIWFGWEPFTDFLRVWLEQWEFTQWIYRFFGFFGVDSVRMALAPFILVALLVPLIVVTSLLLIAGWSMPAVLRHLSRRHFIHLEARQGGSFWGSLGQSLGATLIFLVAALVTLPLWLVPPFFAIVPPLLWGWLTYRVMTYDALAYHATAEERRRIVREKRLPLLVIGVATGLLGSLPTLLWVSSVIMIVLFPVIALLAIWLYVVIFVFSALWFAHYCLRALSRLRAEDARHEPTLAGTVLPVVDDARPETEDLPPALPPPGSPNGSP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009553_2	2.2\|3068725\|25\|NZ_CP009553\|PILER-CR	3068725-3068749	25	HG796373	Uncultured bacterium plasmid pRGI00811	2483-2507	3	0.88
NZ_CP009553_2	2.2\|3068725\|25\|NZ_CP009553\|PILER-CR	3068725-3068749	25	CP021131	Meiothermus taiwanensis strain WR-220 plasmid pMtWR-220, complete sequence	152751-152775	4	0.84

1. spacer 2.2|3068725|25|NZ_CP009553|PILER-CR matches to HG796373 (Uncultured bacterium plasmid pRGI00811) position: , mismatch: 3, identity: 0.88

agccttttcggcatccacggtggcc	CRISPR spacer
aaccttctcggcatccacgatggcc	Protospacer
*.****.************.*****

2. spacer 2.2|3068725|25|NZ_CP009553|PILER-CR matches to CP021131 (Meiothermus taiwanensis strain WR-220 plasmid pMtWR-220, complete sequence) position: , mismatch: 4, identity: 0.84

agccttttcggcatccacggtggcc	CRISPR spacer
caccttttcggcatcctcggtggac	Protospacer
 .************** ****** *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

445467 : 494787

Burkholderia_phage(35.71%)

holin,tail,terminase,transposase,head,capsid,protease,portal,plate,integrase

attL 446077:446122|attR 480076:480121

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023593907.1\|445467_445926_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	3.2e-20	44.0
446077:446122	attL	NA	NA	NA	NA
WP_038619095.1\|446196_447225_-\|integrase	tyrosine-type recombinase/integrase	E5E3T0	Burkholderia_phage	3.1e-124	64.3
WP_081326792.1\|447225_447480_-	DUF4224 domain-containing protein	E5E3T1	Burkholderia_phage	2.1e-13	52.8
WP_038619092.1\|447449_450161_-	toprim domain-containing protein	A0A077K8T2	Ralstonia_phage	8.2e-289	55.8
WP_038619089.1\|450174_450423_-	hypothetical protein	I6NMK4	Burkholderia_virus	9.5e-11	43.5
WP_048806471.1\|450419_450884_-	hypothetical protein	NA	NA	NA	NA
WP_038619086.1\|450897_451158_-	hypothetical protein	NA	NA	NA	NA
WP_038619083.1\|451312_451528_-	hypothetical protein	NA	NA	NA	NA
WP_081326793.1\|451626_452007_-	ogr/Delta-like zinc finger family protein	A0A077K829	Ralstonia_phage	1.8e-16	51.3
WP_038619076.1\|452003_452300_-	hypothetical protein	E5E3P2	Burkholderia_phage	8.4e-22	58.1
WP_155765745.1\|452303_452486_-	hypothetical protein	NA	NA	NA	NA
WP_038619074.1\|452663_453083_+	helix-turn-helix transcriptional regulator	A4JWR8	Burkholderia_virus	2.0e-32	54.0
WP_038619071.1\|453142_453880_+	hypothetical protein	A4PE55	Ralstonia_virus	3.2e-14	31.2
WP_038619068.1\|453920_454769_+	hypothetical protein	NA	NA	NA	NA
WP_038619065.1\|454765_455920_-	phage late control D family protein	E5E3P7	Burkholderia_phage	1.6e-100	58.0
WP_038619062.1\|455919_456429_-\|tail	phage tail protein	A0A1S5NTH4	Burkholderia_phage	5.7e-42	62.2
WP_038619059.1\|456439_459100_-	hypothetical protein	A4PE52	Ralstonia_virus	7.9e-212	49.9
WP_081326794.1\|459096_459294_-\|tail	GpE family phage tail protein	A0A077K821	Ralstonia_phage	1.9e-09	55.9
WP_048806470.1\|459197_459515_-\|tail	phage tail assembly protein	A4PE51	Ralstonia_virus	1.2e-21	55.0
WP_038619056.1\|459577_460087_-\|tail	phage major tail tube protein	A0A1S5NNH7	Burkholderia_phage	2.1e-52	58.0
WP_038619053.1\|460109_461288_-\|tail	phage tail sheath protein	A0A077K9Y4	Ralstonia_phage	2.9e-166	70.8
WP_038619050.1\|461420_462140_-	site-specific DNA-methyltransferase	A0A1S5NPU0	Burkholderia_phage	6.7e-89	63.0
WP_081326795.1\|462097_462325_-	Com family DNA-binding transcriptional regulator	A0A1S5NPS9	Burkholderia_phage	2.1e-17	71.9
WP_038619044.1\|462698_463694_+\|integrase	tyrosine-type recombinase/integrase	B5WZU7	Pseudomonas_phage	2.9e-34	37.0
WP_038619042.1\|463697_464048_-	hypothetical protein	NA	NA	NA	NA
WP_038619035.1\|465974_466589_-\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	7.8e-62	65.6
WP_038619029.1\|466585_467521_-\|plate	baseplate J/gp47 family protein	A0A077K9X9	Ralstonia_phage	5.8e-77	54.2
WP_038619027.1\|467517_467889_-	GPW/gp25 family protein	A4PE42	Ralstonia_virus	9.2e-26	55.3
WP_038619020.1\|467885_468521_-\|plate	phage baseplate assembly protein V	A4PE41	Ralstonia_virus	2.3e-40	45.9
WP_038619018.1\|468591_469044_-	phage virion morphogenesis protein	A0A1S5NPT5	Burkholderia_phage	7.0e-36	54.0
WP_038619015.1\|469046_469496_-\|tail	phage tail protein	A0A077K8R3	Ralstonia_phage	1.2e-27	46.2
WP_115344426.1\|469492_470005_-	hypothetical protein	A0A1S5NQ26	Burkholderia_phage	1.1e-29	52.8
WP_038619013.1\|470001_470817_-	N-acetylmuramidase family protein	A0A077K808	Ralstonia_phage	3.0e-85	63.6
WP_038619011.1\|470800_471124_-\|holin	phage holin family protein	A0A077KER0	Ralstonia_phage	3.9e-20	53.9
WP_038619009.1\|471120_471495_-\|holin	phage holin family protein	E5E3R9	Burkholderia_phage	2.6e-28	59.7
WP_038619007.1\|471497_471701_-\|tail	tail protein X	A0A2H4J946	uncultured_Caudovirales_phage	3.5e-19	63.6
WP_038619005.1\|471700_472183_-\|head	head completion/stabilization protein	E5E3S2	Burkholderia_phage	1.8e-29	47.3
WP_038619003.1\|472283_472967_-	hypothetical protein	A0A077K804	Ralstonia_phage	3.4e-50	49.6
WP_038619000.1\|472969_473980_-\|capsid	phage major capsid protein, P2 family	E5FFI6	Burkholderia_phage	1.9e-134	67.6
WP_038618997.1\|474031_474910_-\|capsid	GPO family capsid scaffolding protein	E5E3S5	Burkholderia_phage	3.8e-62	49.3
WP_038621740.1\|475052_476825_+\|terminase	terminase ATPase subunit family protein	A0A077K8Q7	Ralstonia_phage	1.2e-235	68.9
WP_038618994.1\|476821_477880_+\|portal	phage portal protein	A0A077K9Q8	Ralstonia_phage	6.7e-138	69.5
WP_147291585.1\|477888_478134_-	hypothetical protein	NA	NA	NA	NA
WP_038618988.1\|479052_479646_+	hypothetical protein	NA	NA	NA	NA
WP_147291584.1\|479732_479942_+	hypothetical protein	NA	NA	NA	NA
WP_038618982.1\|480933_481896_-	DUF932 domain-containing protein	A0A218M383	Acidovorax_phage	6.1e-53	39.3
480076:480121	attR	NA	NA	NA	NA
WP_038621737.1\|481987_482422_-	hypothetical protein	NA	NA	NA	NA
WP_038618976.1\|483402_483594_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_038618973.1\|483597_484005_+	DNA mismatch endonuclease Vsr	I6NSG0	Burkholderia_phage	9.1e-35	52.0
WP_038618970.1\|483997_485185_+	DNA cytosine methyltransferase	A7XXH6	Thermus_virus	1.1e-27	29.3
WP_038618967.1\|485206_487555_+	ATP-binding protein	NA	NA	NA	NA
WP_038618964.1\|487556_489233_+	DEAD/DEAH box helicase family protein	A0A097BY72	Enterococcus_phage	6.9e-28	29.1
WP_038618963.1\|489229_489766_+	hypothetical protein	NA	NA	NA	NA
WP_052408617.1\|489931_491944_+	ATP-binding protein	NA	NA	NA	NA
WP_038618960.1\|491983_492292_-	hypothetical protein	NA	NA	NA	NA
WP_038618959.1\|492988_493774_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	3.4e-78	57.3
WP_038618958.1\|493770_494787_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-73	44.9

DBSCAN-SWA_2

1802004 : 1845765

Bacillus_phage(27.27%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038618142.1\|1802004_1803879_+\|protease	ATP-dependent zinc metalloprotease FtsH	C7U047	Ostreococcus_tauri_virus	4.6e-113	42.4
WP_024788457.1\|1804204_1805095_+	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	3.0e-22	33.0
WP_023595188.1\|1805268_1806612_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_023595189.1\|1807187_1808222_+	phosphate ABC transporter substrate-binding protein PstS	A0A222YW41	Synechococcus_phage	2.8e-48	36.8
WP_038618137.1\|1808358_1809333_+	phosphate ABC transporter permease PstC	NA	NA	NA	NA
WP_038618135.1\|1809332_1810229_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_023595192.1\|1810295_1811078_+	phosphate ABC transporter ATP-binding protein PstB	W8CYL7	Bacillus_phage	2.6e-14	30.6
WP_023595193.1\|1811100_1811808_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_023595194.1\|1811841_1812546_+	phosphate regulon transcriptional regulator PhoB	W8CYM9	Bacillus_phage	2.4e-35	39.7
WP_038618131.1\|1812652_1813978_+	phosphate regulon sensor histidine kinase PhoR	W8CYF6	Bacillus_phage	2.5e-33	34.8
WP_048806394.1\|1814017_1816132_-	polyphosphate kinase 1	NA	NA	NA	NA
WP_023871783.1\|1816284_1817799_+	exopolyphosphatase	NA	NA	NA	NA
WP_023595198.1\|1817927_1818755_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_023871781.1\|1818964_1819441_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_023871780.1\|1819871_1821641_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_048806393.1\|1822034_1831154_+	hemagglutinin repeat-containing protein	A0A0R6PJK4	Moraxella_phage	8.6e-32	34.1
WP_081326841.1\|1831153_1831462_+	DUF3630 family protein	NA	NA	NA	NA
WP_115344378.1\|1831626_1832864_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	3.9e-161	98.2
WP_052408610.1\|1833526_1835167_+	hypothetical protein	NA	NA	NA	NA
WP_023595207.1\|1835895_1836063_+	hypothetical protein	NA	NA	NA	NA
WP_069106822.1\|1836098_1836425_+\|transposase	transposase	NA	NA	NA	NA
WP_038618124.1\|1836393_1837179_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	3.1e-79	57.6
WP_169834586.1\|1837557_1838756_-\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	1.1e-101	64.5
WP_144347290.1\|1840028_1840358_+	hypothetical protein	NA	NA	NA	NA
WP_023595209.1\|1840511_1841267_+	hypothetical protein	NA	NA	NA	NA
WP_038618117.1\|1841317_1841527_+	hypothetical protein	NA	NA	NA	NA
WP_048806392.1\|1841617_1842436_+	hypothetical protein	NA	NA	NA	NA
WP_115344375.1\|1842631_1843721_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	8.1e-46	40.8
WP_147291574.1\|1843807_1844269_+	hypothetical protein	NA	NA	NA	NA
WP_115344373.1\|1844662_1845765_-\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

3168199 : 3175399

Burkholderia_virus(33.33%)

holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052408596.1\|3168199_3168583_-	DUF1353 domain-containing protein	A0A1L2CVI8	Pectobacterium_phage	3.6e-17	45.0
WP_155765753.1\|3168579_3168972_-	hypothetical protein	NA	NA	NA	NA
WP_147291555.1\|3169037_3169250_+	hypothetical protein	NA	NA	NA	NA
WP_038617151.1\|3169329_3169527_-	hypothetical protein	NA	NA	NA	NA
WP_147291554.1\|3169600_3170260_-	hypothetical protein	I6WLM5	Burkholderia_virus	1.2e-39	44.9
WP_038617145.1\|3170312_3170822_-	hypothetical protein	NA	NA	NA	NA
WP_038617144.1\|3170826_3171123_-\|holin	phage holin family protein	C7BGD7	Burkholderia_phage	1.8e-19	53.9
WP_038617141.1\|3171137_3171668_-	glycoside hydrolase family 104 protein	Q6J1Q5	Burkholderia_virus	1.8e-43	55.7
WP_038617139.1\|3171694_3172201_-	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_147291553.1\|3172211_3173588_-	hypothetical protein	H8ZLV3	Pseudomonas_phage	2.0e-09	39.2
WP_038620882.1\|3173603_3174278_-	hypothetical protein	NA	NA	NA	NA
WP_038620879.1\|3174274_3175399_-\|plate	baseplate J/gp47 family protein	B3GAJ9	uncultured_virus	9.2e-61	44.8

DBSCAN-SWA_4

3186427 : 3198007

Pseudomonas_phage(22.22%)

coat,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081327008.1\|3186427_3187570_-\|coat	P22 coat - protein 5 family protein	W6EBZ8	Rhizobium_phage	3.1e-96	53.9
WP_038620845.1\|3187783_3188557_-	hypothetical protein	A0A0H5AWD1	Pseudomonas_phage	2.7e-51	53.1
WP_038620842.1\|3188692_3190081_-	DUF4055 domain-containing protein	A0A0S2SYJ5	Pseudomonas_phage	4.3e-100	45.2
WP_115344660.1\|3190094_3191348_-\|terminase	terminase	A0A2R3UAD4	Siphoviridae_environmental_samples	1.0e-164	69.4
WP_115344510.1\|3191361_3191844_-	hypothetical protein	A0A2H4J1J5	uncultured_Caudovirales_phage	2.1e-22	43.6
WP_038620835.1\|3191977_3193351_-	chromosome partitioning protein ParB	R4THK0	Halovirus	2.0e-86	41.6
WP_058371660.1\|3193490_3193841_+	hypothetical protein	NA	NA	NA	NA
WP_038620832.1\|3194077_3194269_+	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	5.6e-11	53.3
WP_038620831.1\|3194265_3194661_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_038620829.1\|3194683_3194935_+	hypothetical protein	NA	NA	NA	NA
WP_048806609.1\|3195036_3195663_-	hypothetical protein	NA	NA	NA	NA
WP_038622431.1\|3195695_3196166_-	RusA family crossover junction endodeoxyribonuclease	A9YWY9	Burkholderia_phage	2.1e-43	57.7
WP_058371661.1\|3196162_3196366_-	hypothetical protein	NA	NA	NA	NA
WP_048806608.1\|3196368_3197145_-	hypothetical protein	NA	NA	NA	NA
WP_081326897.1\|3197095_3198007_-	YdaU family protein	A8HP60	Thalassomonas_phage	1.2e-13	39.6

DBSCAN-SWA_5

3204983 : 3213602

Pseudomonas_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038620807.1\|3204983_3205790_+	PD-(D/E)XK nuclease family protein	J7HXJ4	Pseudomonas_phage	3.0e-90	59.8
WP_038620804.1\|3205799_3206918_+	hypothetical protein	J7HXB6	Pseudomonas_phage	2.4e-69	57.5
WP_038620801.1\|3207033_3207894_+	cell division protein FtsK	J7I0T4	Pseudomonas_phage	1.6e-33	37.3
WP_038620798.1\|3207898_3209638_+	AAA family ATPase	H2BD46	Pseudomonas_phage	3.4e-86	39.0
WP_038620796.1\|3209634_3210549_+	hypothetical protein	NA	NA	NA	NA
WP_052408641.1\|3210548_3211370_+	hypothetical protein	R9TN97	Rhizobium_phage	5.4e-18	63.8
WP_038620795.1\|3211605_3212439_+	DNA adenine methylase	A0A0K1LM14	Caulobacter_phage	7.0e-74	52.1
WP_038622417.1\|3212444_3213602_+	DNA (cytosine-5-)-methyltransferase	Q6V7R9	Burkholderia_virus	4.4e-66	43.1

DBSCAN-SWA_6

4351987 : 4454003

Burkholderia_phage(29.41%)

tail,terminase,transposase,head,capsid,protease,portal,plate,integrase

attL 4416906:4416952|attR 4454067:4454113

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038620084.1\|4351987_4353238_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-40	41.7
WP_147291601.1\|4353318_4353639_-	hypothetical protein	NA	NA	NA	NA
WP_081326944.1\|4353642_4354029_-	hypothetical protein	NA	NA	NA	NA
WP_038620081.1\|4353962_4354997_-	DUF637 domain-containing protein	NA	NA	NA	NA
WP_115344478.1\|4355055_4356241_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.2e-48	38.8
WP_038620077.1\|4356351_4356984_-	hypothetical protein	NA	NA	NA	NA
WP_147291600.1\|4357164_4357584_-	hypothetical protein	NA	NA	NA	NA
WP_081214899.1\|4358845_4359652_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	3.0e-37	45.4
WP_115344476.1\|4360170_4361408_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	9.3e-147	89.8
WP_025249736.1\|4361518_4361911_-	hypothetical protein	NA	NA	NA	NA
WP_115344473.1\|4362182_4363284_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_058371696.1\|4363655_4375400_-	filamentous hemagglutinin N-terminal domain-containing protein	A0A0R6PJK4	Moraxella_phage	4.0e-21	29.2
WP_115344630.1\|4375593_4376445_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_038620069.1\|4376584_4378381_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_081326946.1\|4378377_4380543_-	filamentous hemagglutinin N-terminal domain-containing protein	A0A0R6PJK4	Moraxella_phage	4.1e-17	25.3
WP_038620066.1\|4381041_4381677_-	flavin reductase family protein	NA	NA	NA	NA
WP_115344471.1\|4381694_4382570_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_048806837.1\|4382637_4383564_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_081326947.1\|4383919_4385194_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_023873229.1\|4385265_4386144_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_038620059.1\|4386140_4388738_+	ATP-binding cassette domain-containing protein	A0A285PWH2	Cedratvirus	7.0e-11	28.1
WP_038620056.1\|4388734_4390384_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA
WP_038620053.1\|4390471_4391263_-	EAL domain-containing protein	NA	NA	NA	NA
WP_023873224.1\|4391329_4392670_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.1e-15	31.1
WP_036642116.1\|4392666_4393056_-	phosphonate transporter	NA	NA	NA	NA
WP_038620049.1\|4393401_4394205_-	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_038620046.1\|4394494_4396363_+	bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	NA	NA	NA	NA
WP_038620044.1\|4396366_4397326_+	3-carboxyethylcatechol 2,3-dioxygenase	NA	NA	NA	NA
WP_038620041.1\|4397341_4398127_+	2-keto-4-pentenoate hydratase	NA	NA	NA	NA
WP_038620038.1\|4398235_4399513_+	3-(3-hydroxy-phenyl)propionate transporter MhpT	NA	NA	NA	NA
WP_023873211.1\|4399623_4400502_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_038620036.1\|4400479_4401844_-	MFS transporter	NA	NA	NA	NA
WP_048806529.1\|4401882_4402740_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_028731230.1\|4404087_4404972_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_048806528.1\|4405037_4406429_-	MmgE/PrpD family protein	NA	NA	NA	NA
WP_038620032.1\|4406540_4407461_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_160117968.1\|4407428_4408235_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_025249775.1\|4408323_4409529_-	porin	NA	NA	NA	NA
WP_028731227.1\|4409625_4410951_-	MFS transporter	NA	NA	NA	NA
WP_048806526.1\|4410998_4411850_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_115344469.1\|4412386_4413494_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_147291599.1\|4413720_4414755_+	hypothetical protein	NA	NA	NA	NA
WP_081256068.1\|4415767_4416523_-\|portal	phage portal protein	A4PE27	Ralstonia_virus	1.5e-102	75.5
4416906:4416952	attL	NA	NA	NA	NA
WP_038620013.1\|4417069_4417525_-	hypothetical protein	NA	NA	NA	NA
WP_038620010.1\|4417905_4418310_-	hypothetical protein	NA	NA	NA	NA
WP_038620008.1\|4418922_4419714_-	DNA adenine methylase	C7BGE1	Burkholderia_phage	3.4e-118	75.7
WP_147291598.1\|4419895_4420597_+	hypothetical protein	NA	NA	NA	NA
WP_147291597.1\|4420858_4421266_-	hypothetical protein	NA	NA	NA	NA
WP_038620001.1\|4421252_4421654_-	hypothetical protein	R4JJW4	Burkholderia_phage	2.2e-25	53.0
WP_038619998.1\|4421632_4422079_-	hypothetical protein	NA	NA	NA	NA
WP_038619995.1\|4422080_4422614_-	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	4.4e-37	52.9
WP_038619992.1\|4422669_4422858_-	hypothetical protein	NA	NA	NA	NA
WP_038619989.1\|4422869_4423823_-	hypothetical protein	Q6QI97	Burkholderia_phage	3.1e-25	34.3
WP_038619986.1\|4423832_4424429_-	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	1.7e-53	54.6
WP_038619984.1\|4424419_4425472_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	1.6e-83	48.6
WP_038619981.1\|4425461_4425866_-	phage GP46 family protein	B5TK74	Pseudomonas_phage	6.5e-33	55.6
WP_038619978.1\|4425862_4426402_-\|plate	phage baseplate assembly protein	F6MIL4	Haemophilus_phage	2.1e-18	38.7
WP_038619975.1\|4426401_4427520_-\|plate	baseplate protein	B5TK72	Pseudomonas_phage	1.1e-95	50.1
WP_038619973.1\|4427521_4428739_-	DNA circularization N-terminal domain-containing protein	S5FUX4	Shigella_phage	7.9e-42	32.7
WP_038619970.1\|4428753_4430589_-\|tail	phage tail tape measure protein	U5P420	Shigella_phage	2.1e-118	52.0
WP_048806524.1\|4430718_4431249_-\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	6.8e-06	36.8
WP_038619967.1\|4431239_4431587_-\|tail	phage tail tube protein	B5TK68	Pseudomonas_phage	1.1e-36	63.2
WP_038619964.1\|4431650_4433144_-\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	1.8e-160	57.4
WP_038619960.1\|4433140_4433335_-	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	2.5e-06	59.5
WP_038619957.1\|4433334_4433925_-	hypothetical protein	Q8SBH4	Shigella_phage	2.5e-25	37.9
WP_038619953.1\|4433933_4434371_-	hypothetical protein	NA	NA	NA	NA
WP_038619950.1\|4434360_4434717_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_052408627.1\|4434713_4435298_-\|head,tail	phage head-tail connector protein	C7BGH1	Burkholderia_phage	2.5e-41	46.4
WP_038619947.1\|4435358_4436612_-\|capsid	phage major capsid protein	C7BGH0	Burkholderia_phage	2.2e-143	61.8
WP_038619944.1\|4436681_4437476_-\|protease	Clp protease ClpP	C7BGG9	Burkholderia_phage	6.5e-77	64.9
WP_038619941.1\|4437441_4438743_-\|portal	phage portal protein	C7BGG8	Burkholderia_phage	2.4e-137	54.0
WP_174234925.1\|4438739_4440593_-\|terminase	terminase large subunit	C7BGG7	Burkholderia_phage	2.7e-251	74.6
WP_038619935.1\|4441177_4441549_-	HNH endonuclease	C7BGG5	Burkholderia_phage	3.5e-41	65.6
WP_147291596.1\|4441819_4442248_-	hypothetical protein	NA	NA	NA	NA
WP_069106845.1\|4442244_4442694_-	hypothetical protein	A0A077KB11	Edwardsiella_phage	3.8e-18	47.9
WP_058371699.1\|4442768_4443287_-	helix-turn-helix domain-containing protein	R9TP35	Vibrio_phage	1.7e-09	31.0
WP_038619931.1\|4443298_4444672_-	replicative DNA helicase	C7BGG1	Burkholderia_phage	1.0e-122	49.9
WP_038619929.1\|4444698_4444923_-	hypothetical protein	NA	NA	NA	NA
WP_058371700.1\|4444952_4445483_-	phage regulatory CII family protein	NA	NA	NA	NA
WP_058371701.1\|4445970_4446657_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_155765762.1\|4447033_4447177_+	hypothetical protein	NA	NA	NA	NA
WP_038619919.1\|4447282_4447489_+	hypothetical protein	NA	NA	NA	NA
WP_052408626.1\|4448030_4448516_+	PRTRC system protein E	NA	NA	NA	NA
WP_081326949.1\|4448543_4448936_+	PRTRC system protein C	NA	NA	NA	NA
WP_038619916.1\|4449117_4450107_+	PRTRC system protein F	NA	NA	NA	NA
WP_038619913.1\|4450103_4450820_+	PRTRC system protein B	NA	NA	NA	NA
WP_038619910.1\|4450819_4451623_+	PRTRC system protein A	NA	NA	NA	NA
WP_038619907.1\|4451612_4451912_+	hypothetical protein	NA	NA	NA	NA
WP_038619904.1\|4451908_4452709_+	PRTRC system ThiF family protein	NA	NA	NA	NA
WP_038619901.1\|4452717_4452933_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_174234924.1\|4452932_4454003_+\|integrase	integrase	NA	NA	NA	NA
4454067:4454113	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009553

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection