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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP009496 Mycolicibacterium smegmatis strain INHR2 chromosome, complete genome 1 crisprs csa3,WYL,cas3,cas4,DEDDh,DinG 0 2 4 0

Results visualization

1. NZ_CP009496
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009496_1 952771-953019 Orphan NA
4 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NZ_CP032230 Streptomyces seoulensis strain KCTC 9819 plasmid unnamed 30395-30424 5 0.833
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NZ_CP050095 Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b1, complete sequence 235544-235573 5 0.833
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NC_008381 Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10, complete sequence 440097-440126 5 0.833
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NZ_CP024288 Escherichia albertii strain 2014C-4356 plasmid unnamed6, complete sequence 15605-15634 5 0.833
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NZ_CP029356 Azospirillum sp. CFH 70021 plasmid unnamed1 823218-823247 5 0.833
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 MT310860 Mycobacterium phage Chris, complete genome 28930-28959 5 0.833
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 MK460246 Mycobacterium phage Nibb, complete genome 28344-28373 5 0.833
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NC_012854 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505, complete sequence 88202-88231 5 0.833
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NC_021857 Shigella phage SfII, complete genome 8109-8138 5 0.833
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 KC814930 Shigella phage SfIV, complete genome 8065-8094 5 0.833
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NC_003444 Enterobacteria phage SfV, complete genome 7803-7832 5 0.833
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 U82619 Shigella flexneri bacteriophage V, complete genome 7803-7832 5 0.833
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NZ_CP015032 Burkholderia cenocepacia strain 842 plasmid pBcn842-1, complete sequence 131819-131848 6 0.8
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NZ_CP025017 Rhizobium leguminosarum strain Norway plasmid pRLN5, complete sequence 224776-224805 6 0.8
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NZ_CP053443 Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eC, complete sequence 206488-206517 6 0.8
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 MH669007 Gordonia phage Marietta, complete genome 15226-15255 6 0.8
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NZ_CP021032 Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence 171071-171100 6 0.8
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NZ_CP032324 Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence 13199-13228 6 0.8
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NC_028827 Streptomyces phage Lannister, complete genome 12475-12504 7 0.767
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NZ_CP007796 Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence 55428-55457 7 0.767
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NZ_CP012477 Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence 745572-745601 7 0.767
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NZ_CP012478 Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed1, complete sequence 149382-149411 7 0.767
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NZ_CP023550 Rhodobacter sp. CZR27 plasmid unnamed2, complete sequence 151168-151197 7 0.767
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 MN582099 Inoviridae sp. ctBZ32, complete genome 1092-1121 7 0.767
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NZ_CP039340 Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence 833750-833779 8 0.733
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NZ_CP007130 Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence 386173-386202 8 0.733
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NC_019307 Streptomyces sp. W75 plasmid pCQ4, complete sequence 41196-41225 8 0.733
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NZ_CP032828 Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence 263301-263330 8 0.733
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 MK376955 Mycobacterium phage KiSi, complete genome 55139-55168 8 0.733
NZ_CP009496_1 1.1|952789|30|NZ_CP009496|CRT 952789-952818 30 NZ_CP048424 Rhizobium daejeonense strain KACC 13094 plasmid unnamed1, complete sequence 194221-194250 9 0.7
NZ_CP009496_1 1.3|952900|36|NZ_CP009496|CRT 952900-952935 36 KP966108 Burkholderia phage vB_BceM_AP3, complete genome 3540-3575 10 0.722

1. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NZ_CP032230 (Streptomyces seoulensis strain KCTC 9819 plasmid unnamed) position: , mismatch: 5, identity: 0.833

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
ccggacccatcggcgtcaccgtcgccgccg	Protospacer
*.* .***.*************.*******

2. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NZ_CP050095 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b1, complete sequence) position: , mismatch: 5, identity: 0.833

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
ccgtcgccctcggcgccaccgttgccgccg	Protospacer
*.**  ** ******.**************

3. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NC_008381 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10, complete sequence) position: , mismatch: 5, identity: 0.833

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
ccgtcgccctcggcgccaccgttgccgccg	Protospacer
*.**  ** ******.**************

4. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NZ_CP024288 (Escherichia albertii strain 2014C-4356 plasmid unnamed6, complete sequence) position: , mismatch: 5, identity: 0.833

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
cggtcaccgtcagcgtaaccgttgccgccg	Protospacer
* **  *****.**** *************

5. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 5, identity: 0.833

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
cggtttccgtcgccgtcaccgtcgccgccg	Protospacer
* ** .****** *********.*******

6. spacer 1.1|952789|30|NZ_CP009496|CRT matches to MT310860 (Mycobacterium phage Chris, complete genome) position: , mismatch: 5, identity: 0.833

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
ctgtgcccgtcggcgacaccgtggtaaccg	Protospacer
*************** ****** *. .***

7. spacer 1.1|952789|30|NZ_CP009496|CRT matches to MK460246 (Mycobacterium phage Nibb, complete genome) position: , mismatch: 5, identity: 0.833

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
ctgtgcccgtcggcgacaccgtggtcactg	Protospacer
*************** ****** *.*.*.*

8. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NC_012854 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505, complete sequence) position: , mismatch: 5, identity: 0.833

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
ccgttgccctcggcgccaccgttgccgccg	Protospacer
*.**  ** ******.**************

9. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NC_021857 (Shigella phage SfII, complete genome) position: , mismatch: 5, identity: 0.833

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
cggtcaccgtcagcgtaaccgttgccgccg	Protospacer
* **  *****.**** *************

10. spacer 1.1|952789|30|NZ_CP009496|CRT matches to KC814930 (Shigella phage SfIV, complete genome) position: , mismatch: 5, identity: 0.833

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
cggtcaccgtcagcgtaaccgttgccgccg	Protospacer
* **  *****.**** *************

11. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NC_003444 (Enterobacteria phage SfV, complete genome) position: , mismatch: 5, identity: 0.833

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
cggtcaccgtcagcgtaaccgttgccgccg	Protospacer
* **  *****.**** *************

12. spacer 1.1|952789|30|NZ_CP009496|CRT matches to U82619 (Shigella flexneri bacteriophage V, complete genome) position: , mismatch: 5, identity: 0.833

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
cggtcaccgtcagcgtaaccgttgccgccg	Protospacer
* **  *****.**** *************

13. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NZ_CP015032 (Burkholderia cenocepacia strain 842 plasmid pBcn842-1, complete sequence) position: , mismatch: 6, identity: 0.8

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
atatgccggtcgacgtcaccgttgccgcga	Protospacer
 *.**** ****.*************** .

14. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NZ_CP025017 (Rhizobium leguminosarum strain Norway plasmid pRLN5, complete sequence) position: , mismatch: 6, identity: 0.8

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
ccgcagccctcggcgccaccgttgccgccg	Protospacer
*.*.. ** ******.**************

15. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NZ_CP053443 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eC, complete sequence) position: , mismatch: 6, identity: 0.8

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
ccgcagccctcggcgccaccgttgccgccg	Protospacer
*.*.. ** ******.**************

16. spacer 1.1|952789|30|NZ_CP009496|CRT matches to MH669007 (Gordonia phage Marietta, complete genome) position: , mismatch: 6, identity: 0.8

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
ccgccgccgttgccgtcaccgttgccgccg	Protospacer
*.*.  ****.* *****************

17. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NZ_CP021032 (Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence) position: , mismatch: 6, identity: 0.8

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
ctatcgcgctcggcgccaccgttgccgccg	Protospacer
**.*  *  ******.**************

18. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 6, identity: 0.8

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
atctggacggcggcgtcaccgtcgccgccg	Protospacer
 * **  ** ************.*******

19. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NC_028827 (Streptomyces phage Lannister, complete genome) position: , mismatch: 7, identity: 0.767

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
cagtcggcgtcggcgtcaccgttgctgcac	Protospacer
* **   ******************.**  

20. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 7, identity: 0.767

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
cgccgggcgtcgccgtcaccgttgccgtcg	Protospacer
*  .*  ***** **************.**

21. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
ccgcccgcggcggcgtcaccgttgccgcgc	Protospacer
*.*. * ** ******************  

22. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NZ_CP012478 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
ccgcccgcggcggcgtcaccgttgccgcgc	Protospacer
*.*. * ** ******************  

23. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NZ_CP023550 (Rhodobacter sp. CZR27 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
ttgccgccgtcgccgtcaccgtcgccgcca	Protospacer
.**.  ****** *********.******.

24. spacer 1.1|952789|30|NZ_CP009496|CRT matches to MN582099 (Inoviridae sp. ctBZ32, complete genome) position: , mismatch: 7, identity: 0.767

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
tcgtcgccgtcgccgtcaccgttgccacca	Protospacer
..**  ****** *************.**.

25. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 8, identity: 0.733

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
agctgtccgtcggcgtcaccgttgacgtgt	Protospacer
   **.****************** **.  

26. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.733

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
cgaccgccgtcggcgtccccgtcgccgcca	Protospacer
* ..  *********** ****.******.

27. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NC_019307 (Streptomyces sp. W75 plasmid pCQ4, complete sequence) position: , mismatch: 8, identity: 0.733

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
tcgacaccgtcggcgtcaccgtgcccgcca	Protospacer
..*   ****************  *****.

28. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NZ_CP032828 (Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
ctgtgcccgtcgccgtcaccgcgcttgggg	Protospacer
************ ********.  ..*  *

29. spacer 1.1|952789|30|NZ_CP009496|CRT matches to MK376955 (Mycobacterium phage KiSi, complete genome) position: , mismatch: 8, identity: 0.733

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
cacagcccctcggcgtcacccttgccggtc	Protospacer
*   **** *********** ****** . 

30. spacer 1.1|952789|30|NZ_CP009496|CRT matches to NZ_CP048424 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

ctgtgcccgtcggcgtcaccgttgccgccg	CRISPR spacer
tggattatctcggcgtcaccgtggccgccg	Protospacer
. *  . . ************* *******

31. spacer 1.3|952900|36|NZ_CP009496|CRT matches to KP966108 (Burkholderia phage vB_BceM_AP3, complete genome) position: , mismatch: 10, identity: 0.722

ttgccgccggcacccgtgtgcgatgggtcgacgtac	CRISPR spacer
ccggcgctgtcacccgtgtgcgatgggtcgtagcct	Protospacer
..* ***.* ********************  *. .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 432230 : 440689 7 Shahe_endorna-like_virus(28.57%) NA NA
DBSCAN-SWA_2 2213578 : 2221145 7 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_3 4184777 : 4239534 48 Shigella_phage(12.5%) transposase,integrase attL 4178883:4178899|attR 4242621:4242637
DBSCAN-SWA_4 6214388 : 6252007 34 Mycobacterium_phage(58.33%) transposase,holin,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage