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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP009615 Mycobacterium abscessus strain DJO-44274, complete genome 4 crisprs csa3,cas3,WYL,cas4,DEDDh,DinG 0 1 3 0

Results visualization

1. NZ_CP009615
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009615_1 566686-566814 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009615_2 3793084-3793171 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009615_3 4517917-4518019 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009615_4 4648209-4648310 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP009615_2 2.1|3793115|26|NZ_CP009615|CRISPRCasFinder 3793115-3793140 26 NZ_CP032323 Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence 418376-418401 5 0.808
NZ_CP009615_2 2.1|3793115|26|NZ_CP009615|CRISPRCasFinder 3793115-3793140 26 NZ_CP007795 Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence 678153-678178 5 0.808
NZ_CP009615_2 2.1|3793115|26|NZ_CP009615|CRISPRCasFinder 3793115-3793140 26 NZ_CP029333 Mycobacterium avium subsp. hominissuis strain MAC109 plasmid pMAC109a, complete sequence 54049-54074 6 0.769
NZ_CP009615_2 2.1|3793115|26|NZ_CP009615|CRISPRCasFinder 3793115-3793140 26 NC_022654 Mycobacterium kansasii ATCC 12478 plasmid pMK12478, complete sequence 143457-143482 6 0.769

1. spacer 2.1|3793115|26|NZ_CP009615|CRISPRCasFinder matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 5, identity: 0.808

tggccccaaccaccctggccggggtt	CRISPR spacer
ccgccgcgaccaccctggccggggtc	Protospacer
. *** *.*****************.

2. spacer 2.1|3793115|26|NZ_CP009615|CRISPRCasFinder matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 5, identity: 0.808

tggccccaaccaccctggccggggtt	CRISPR spacer
ccgccgcgaccaccctggccggggtc	Protospacer
. *** *.*****************.

3. spacer 2.1|3793115|26|NZ_CP009615|CRISPRCasFinder matches to NZ_CP029333 (Mycobacterium avium subsp. hominissuis strain MAC109 plasmid pMAC109a, complete sequence) position: , mismatch: 6, identity: 0.769

tggccccaaccaccctggccggggtt	CRISPR spacer
gtgccccaaccaccctcgccgggcaa	Protospacer
  ************** ******   

4. spacer 2.1|3793115|26|NZ_CP009615|CRISPRCasFinder matches to NC_022654 (Mycobacterium kansasii ATCC 12478 plasmid pMK12478, complete sequence) position: , mismatch: 6, identity: 0.769

tggccccaaccaccctggccggggtt	CRISPR spacer
gtgccccaaccaccctcgccgggcaa	Protospacer
  ************** ******   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 76268 : 84640 8 Mycobacterium_phage(33.33%) NA NA
DBSCAN-SWA_2 774956 : 784455 9 Shahe_endorna-like_virus(25.0%) NA NA
DBSCAN-SWA_3 2024823 : 2033384 7 uncultured_Mediterranean_phage(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage