CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009150	Burkholderia pseudomallei B03 chromosome 2, complete sequence	3 crisprs	cas3,csa3,DinG,RT	2	1	2	0
NZ_CP009151	Burkholderia pseudomallei B03 chromosome 1, complete sequence	2 crisprs	cas3,DEDDh,csa3,DinG	0	0	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009150_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009150_1

2565689-2565781

Orphan

Consensus_repeat	Method
GCGCGTCGGCGCGCGCGGCGGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009150_1

>merge|NZ_CP009150|1|2565689-2565781|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGATCAGCCGCTCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCAGCGCGTCGTCGCGCGCGGCGGCGA

>NZ_CP009150|1|1|2565689-2565781|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGA	TCAGCCGCTCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCA
GCGCGTCGTCGCGCGCGGCGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009150.1\|WP_162483253.1\|2575307_2576798_-\|hexose-kinase	unknown	unknown	gnl\|CDD\|238570
NZ_CP009150.1\|WP_038753797.1\|2555743_2557579_+\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_CP009150.1\|WP_038728004.1\|2568176_2569763_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|183615
NZ_CP009150.1\|WP_004187346.1\|2566244_2566946_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|237383
NZ_CP009150.1\|WP_038759043.1\|2562419_2563268_-\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|376304
NZ_CP009150.1\|WP_004188221.1\|2567731_2568187_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|184057
NZ_CP009150.1\|WP_004529184.1\|2573327_2574506_+\|acetate/propionate-family-kinase	unknown	unknown	gnl\|CDD\|235922
NZ_CP009150.1\|WP_038759039.1\|2566942_2567251_-\|membrane-protein	unknown	unknown	gnl\|CDD\|274462
NZ_CP009150.1\|WP_038759041.1\|2563264_2565253_-\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183987
NZ_CP009150.1\|WP_004524980.1\|2571927_2573331_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236180
NZ_CP009150.1\|WP_004544573.1\|2554469_2555594_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NZ_CP009150.1\|WP_004524990.1\|2557934_2559500_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185008
NZ_CP009150.1\|WP_038753816.1\|2570123_2571917_+\|polyhydroxyalkanoic-acid-synthase	unknown	unknown	gnl\|CDD\|213656
NZ_CP009150.1\|WP_038761138.1\|2560040_2560550_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009150.1\|WP_004188438.1\|2567243_2567735_-\|AtpZ/AtpI-family-protein	unknown	unknown	gnl\|CDD\|378198
NZ_CP009150.1\|WP_038750404.1\|2560607_2561123_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009150.1\|WP_004524995.1\|2550184_2551258_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|235136
NZ_CP009150.1\|WP_038761136.1\|2551254_2554467_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP009150.1\|WP_004187193.1\|2565999_2566248_-\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|184067
NZ_CP009150.1\|WP_004529178.1\|2561187_2562213_-\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|176257

Protein	Function_ID	Function_description	E-value
NZ_CP009150.1\|WP_162483253.1\|2575307_2576798_-\|hexose-kinase	gnl\|CDD\|238570	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.	6.93147e-109
NZ_CP009150.1\|WP_038728004.1\|2568176_2569763_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|183615	PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.	0
NZ_CP009150.1\|WP_004187346.1\|2566244_2566946_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|237383	PRK13421, PRK13421, F0F1 ATP synthase subunit A; Provisional.	1.54059e-122
NZ_CP009150.1\|WP_038759043.1\|2562419_2563268_-\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|376304	pfam00231, ATP-synt, ATP synthase.	3.06374e-34
NZ_CP009150.1\|WP_004188221.1\|2567731_2568187_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|184057	PRK13447, PRK13447, F0F1 ATP synthase subunit epsilon; Provisional.	4.44077e-63
NZ_CP009150.1\|WP_004529184.1\|2573327_2574506_+\|acetate/propionate-family-kinase	gnl\|CDD\|235922	PRK07058, PRK07058, acetate/propionate family kinase.	0
NZ_CP009150.1\|WP_038759039.1\|2566942_2567251_-\|membrane-protein	gnl\|CDD\|274462	TIGR03165, F1F0_chp_2, F1/F0 ATPase, Methanosarcina type, subunit 2. Members of this protein family are uncharacterized, highly hydrophobic proteins encoded in the middle of apparent F1/F0 ATPase operons. We note, however, that this protein is both broadly and sparsely distributed. It is found in about only about two percent of microbial genomes sequenced, with the first ten examples found coming from the Euryarchaeota, Chlorobia, Betaproteobacteria, Deltaproteobacteria, and Planctomycetes. In most of these species, surrounding operon appears to represent a second F1/F0 ATPase system, and the member proteins belong to subfamilies with the same phylogenetic distribution as the current protein family.	1.16351e-09
NZ_CP009150.1\|WP_038759041.1\|2563264_2565253_-\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|183987	PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.	0
NZ_CP009150.1\|WP_004524980.1\|2571927_2573331_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	gnl\|CDD\|236180	PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated.	0
NZ_CP009150.1\|WP_004524990.1\|2557934_2559500_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	2.47951e-79
NZ_CP009150.1\|WP_038753797.1\|2555743_2557579_+\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	2.75967e-132
NZ_CP009150.1\|WP_038753816.1\|2570123_2571917_+\|polyhydroxyalkanoic-acid-synthase	gnl\|CDD\|213656	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis].	2.19289e-178
NZ_CP009150.1\|WP_004544573.1\|2554469_2555594_+\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	1.21198e-25
NZ_CP009150.1\|WP_004188438.1\|2567243_2567735_-\|AtpZ/AtpI-family-protein	gnl\|CDD\|378198	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophobic stretches and is presumed to be a subunit of the enzyme. It carries two transmembrane helices and is a magnesium or calcium uniporter. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI.	7.77353e-17
NZ_CP009150.1\|WP_004524995.1\|2550184_2551258_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	1.83012e-39
NZ_CP009150.1\|WP_038761136.1\|2551254_2554467_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.85043e-92
NZ_CP009150.1\|WP_004187193.1\|2565999_2566248_-\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|184067	PRK13468, PRK13468, F0F1 ATP synthase subunit C; Provisional.	4.45015e-37
NZ_CP009150.1\|WP_004529178.1\|2561187_2562213_-\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|176257	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0

>NZ_CP009150.1|WP_038759041.1|2563264_2565253_-|F0F1-ATP-synthase-subunit-alpha
MTPTPDAPAAADAATGAGWLARRRGALARVALAPVAQAIGRVERVADGIAFVSGLKDTMLNEVLRFEGGVTGFAHTLDEDLISVVLLDPDAGVRAQTAVARTGAVLEVPAGPQLLGRVVDPLGRPLDGGAPLDAAHTLPIERAAPAIIERDLVSEPLDTGVLIVDALFTIGRGQRELIIGDRATGKTSLAIDAIVNQRHSDVICVYVAIGQRASAVRRVIDAVRRYGAPERCVFVVAPAACAPGLQWIAPFAGFSIAEYFRDRGQHALVVVDDLTKHAATHRELALLTREPPGREAYPGDIFYVHARLLERAAKLSAALGGGSLSALPIAETDAGNLAAYIPTNLISITDGQIVLDSALFAANQRPAVDVGLSVSRVGGKAQHPALRAASGRLRLDYAQFLELEAFTRFGGLTDARLRAQITRGERIRALITQPRFRALRTLDEVVLLKALAAGALDAMSPDLVAPLRERLPAWLDARIAALTPALAPPRDWLADDAALDALAESVGELIERIAADAARRATAGMPAEDAAGDIGGAFGGEQARGDADRDADHGANREVSPEASREVSREVSHEADRDAAADAARVAGRAPGRAEPDRAAPRAMPDGPPRAQADGDRASASRPRPDARGDAARTAPSPQGGAETNVNADANVDAEAEARHKR
>NZ_CP009150.1|WP_038759043.1|2562419_2563268_-|F0F1-ATP-synthase-subunit-gamma
MSDKLAAIEARTDTARQLQTVIGAMQGVAAARAHEAQQRLPGIRASAATVGAAIGDALSAGARSGDTAAGARAAPRARLVIVLCSEQGFVGAYNAQLIEHATRPEPSVSREYMMVGSRGAMLADAGGVPLVWRTPMAARADDVVHLANRITDALYAHLAKRGAQPVSIVHAMPGGAARLEVTERRLLPFDYARFDTAPRAQPPLVHLPPATLLAELAQAYVFVELCEAAMLAFAAENEARTRAMIAARESVERALGDLLQAYRIARQDEITADIVELAASGL
>NZ_CP009150.1|WP_004529178.1|2561187_2562213_-|alcohol-dehydrogenase-AdhP
MAQYMKAAVVHAFGEPLRIEEVPVPTPGAGQILVNVKASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGFVAAVGEGVRHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVNGSYAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVTDTRPGQWIAISGIGGLGHVAVQYAKAMGLHVVAVDVAPQKLELARKLGAAFVVDASKDDPAAVIQKEIGGVHGVLVTAVSRGAFAQALGMVRRGGTVSLNGLPPGDFPLPIFSTVLNGITVRGSIVGTRRDLQESLDFAAEGLVRAHIHRDKLEHINGVFSALREGKVDGRIVLTGQ
>NZ_CP009150.1|WP_038750404.1|2560607_2561123_-|hypothetical-protein
MRRAMRGAGRASPSRARRYENVSKEPNTHREAGAPVHRYRLQVRNMNGECRTYELRLSSLDDGYTLEIDEWLNFPDTHLGDVTPVHVSRPVQFAVPAHEFYRRRRAFRTELIESVAAALRAGEVVRMRDSPDEYPGGHAGNPWVNWIRADLRANPGGRPRPVGDDMQDLIH
>NZ_CP009150.1|WP_038761138.1|2560040_2560550_+|hypothetical-protein
MRRIYFLLPDADTARAIVDELLLKRIEWRHIHVVANDRVPLENLPEASIAQSSDLLPALARGTAAGGVTGALAGLAAIAFPPAGLTIADGAVVAFAIAGAGFGAWVGTMIGVSVPNTRLKHFEDAVDNGELLMMIDVHRDRVEEIEALVKQHHPNAHLEGTDPTIPAFP
>NZ_CP009150.1|WP_004524990.1|2557934_2559500_-|methyl-accepting-chemotaxis-protein
MPTLSFRQKLWLPLVISLIALLLVSISSAWLSYQTRMEERRNDLTNVAHVGLSIVREYAALAQRGVLTDAQARKEALERLRSVRYGSDGYFIVIDSSPRMIMHPIKPDTVGKDLRHVADADGRHHYLTFASVAQSPQGGFVDYVFAHPNAHPAKAVDKLGYVIRYAPWDWIISTGAYIDDIQAAFAKSLCLSAGVFALLAALLALSVVYTNRGIERMIGGDPRIAAHMAGVIASGDLATPFATRREDRSSLMFAISQMRDALANAVAQIRASAGYVATTAGEIADSNMDLSSHTECQATALQQAASSMQRLTERVRDTADRARAASELAGSAARITDRGGDMVVRVVAAMNDIRAESRKMVDIIGVIEGIAFQTNILALNAAVEAARAGNEGRGFAVVASEVRVLAQRSASAAKDIRALIGRAAERVGNGAELVEATGATIGEAQHAICRVTGIVQDIAAAATDQSQGLEQINAAVSQMDSVTRRNATLVEHAAIAAQSLNEQSRCLQDAVAAFRTEALGC
>NZ_CP009150.1|WP_038753797.1|2555743_2557579_+|response-regulator
MHVEVFAQHPSCPGWHGEMARRIRAFDWSATELGPLERWPASLVAAVRTVLASPVPLVMLWGSSGYMLYNDAYAAFAGGRHPYLLGQPVELGWPEVADFNRNVMRTCLAGGALSYRDKALVLLRNGRPEEVWMDLYYSPLAGDDGAPAGVLAVVVETTERVLAARHRDRAKAALHETNAELRRLTETLEQRVADAITERASIEEQLRQAQKMEAIGSLTGGIAHDFNNVLQVVSSNLQMLSAELGEDARAQRRIASAANAVARGAQLASHLLAFARRQPLAPAVLEPRGLIDGMREMLHRALGESVHVDADLRDDVWNVLADRHQFENALLNLAINARDAMRGEGTLKITACNIVLEAGRHARRNGLPPGEYVAFDIADNGVGMTPDILERVFEPFFTTKPDGQGTGLGLSMVFGFVKQSGGHTSIESAPGRGTTVRLLLPRCREAPAGEPAAQRRLPAEGGRETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIKGGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVLDAHASARRAHGARHAQADPRKKTAAARVQR
>NZ_CP009150.1|WP_004544573.1|2554469_2555594_+|ABC-transporter-permease
MRRLAIVYRLGVKELWSLVRDPILLVLIAYTFTASIYSAATARPDTLHMAPIAIIDEDASPLSARIASAFFPPQFALPRMVTLAEADRGMNAGDFTFALDIPPNFQRDVLAGRPAQIQLNVDATRMSQAFTGNGYVQQIVSGEIDDFARRYRANTAPPVDIAMHMRFNPNLDQTWFGSLMEVINNVTLLSMVLTGAALIREREHGTIEHLLVMPVTPGEIMLAKVWSMGLVVACAAAFSLAFVVRGALHVPIEGSVALFVIGMAIHLFATTSMGIFLATLVRSMPQFGMLLVLVLLPLQLLSGSLTPRESMPFAVQNIMLAAPTTHFVEIGQAILYRGAGIETVWRQFLILAVIGTALFLLSLKRFRKTIGQMA
>NZ_CP009150.1|WP_038761136.1|2551254_2554467_+|ATP-binding-cassette-domain-containing-protein
MSAPSVVRFSDVSLRYGKTVALERITLEIPAGLTIGLIGPDGVGKSSLLALAAGARALQTGAVDALGGDMRSRRHRERVCRRIAYMPQGLGKNLYPTLSVEENLQFFARLFGHDADERRRRIDALTRSTGLFAFLSRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLARAQFWDLIARIRSERPAMSVIVATAYMDEAQRFDWLIAMDAGRVLATGAPAELLARTGCDSLEAAFIALLPEDERRGHKPVTLEPLRADAQTGTAIEARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPATEGTAQLFGKTVDPKDINTRRRVGYMSQAFSLYSELTVRQNLVLHARLFGVPAAEIDARVDEMARRFGLADIYDMLPDSLPLGMRQRLSLAVAMVHKPELLILDEPTSGVDPVARDSFWQLMIDLARRDRVTIFISTHFMNEAQRCDRISLMHAGRVLASDAPAALVRACGAATLEEAFIGYLVDASAQEAQGGAGGRPGAGERAAGESLAGRGAATDGDADGAHARPAAYANGAAQHRAPDADAAGTDVAAETGARDDARTAHAAGHSAGNDVRATVGSEVGSDVGSDVGAESGSERGVAHGAERAREPAADAGAAIDVEPGASAESATAAVAPARHAESAATSPRAGNAPAGTPFAAAPPSHAAPAEPPHRAFSAQRALSYMWREMLELRRDPVRATLALIGSLVLMCVIGIGISLDVEDLTYAVLDRDQTELSHDYALNLSGSRYFVERPPIADYAALDRRMRDGELSLAIEIPPNFARDVERGAPAQIGMWIDGAMPQRAETIRGYAIGMHTMWLADKARHRLGVTLAPRAEVVTRYRYNPDVKSLPAMIPAVMPLLLLMLPAMLTALAVVRERELGSILNLYVTPVTRTEFLIGKQVPYVVLAMLNFLLMTMLARIAFDVPVKGSFMTLLLAVLIFNVVATGIGLLASTFTRSQVAAIVMTIIGTMIPTVQFAGLLTPLSSLEGTGRLIGLVYPATYMLSISRGVFNKALSLHDLYSQFWPLAACVPVILGATILLLKKQER
>NZ_CP009150.1|WP_004524995.1|2550184_2551258_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MIQVTRKQIVAAAAVVVVALGAYYGWTLLRHQGPGDGFASGNGRIEATEIDVATKLPGRIDAILVDEGDFVKAGQPLANMQIQVLRAQYDEATAQRQRALNTAAGVQSQVAQRKSDKAAAQAMVVLRESELDAAERRLARSQTLSREGASSLQELDDDRARARSAQAAVSAAAAQVAAAQAAIEATEAQLVAAHSAVTAADATVARVQADIDDSQLASPRDGRVQYRVAQPGEVLPAGGKVLNLVDLSDVYMTFFLPETVVGRVALGADARIILDAAPNYVIPATVSFVSSTAQFTPKTVETANERQKLMFRVKARIDRELLQKHLKLVKTGLPGVAWVRVDPSKPWPAQLMVKVPQ
>NZ_CP009150.1|WP_004187193.1|2565999_2566248_-|F0F1-ATP-synthase-subunit-C
MNNLIEVVSIAAAALAVSFGAIGPALAEGRAVGAAMDAIARQPDASGTVSRTLFVGLAMIETMAIYCLVVALLLLFANPFVK
>NZ_CP009150.1|WP_004187346.1|2566244_2566946_-|F0F1-ATP-synthase-subunit-A
MNASPLSTVPLFSVGPVGISAPVLATWAIMAVLVALALVARRRLSVDAPSRLQSVLELFVATVDAQIADTMQTPPARYRALIGTIFVLVFCANGASLVPGVEPPTAHLETDAALALVVLAATLYYGVRARGVRGYLATFAEPTWVMIPLNVVEQLTRTFSLIVRLFGNVMSGVFVIGIVLSLAGLFVPIPLMALDLLTGTVQAYIFMVLSMVFIGAAVSGDETSAPRRGQENT
>NZ_CP009150.1|WP_038759039.1|2566942_2567251_-|membrane-protein
MIEMWETARALFDGIAAAIGLALGFAAGACHFVSLGWNSRLFVAGRAGVALALQLARVALAVAVLVVLARAGFGMLVAGSAGFFAARAIAVRRAAALTGARR
>NZ_CP009150.1|WP_004188438.1|2567243_2567735_-|AtpZ/AtpI-family-protein
MMKRRPPEVKREARDDAARGDARHAGAGAAPDDPRGAARRDPSPGSRAARGGATHPAARAAEPAAPKPAADRVERAAHTAAARAARGARDPEPSLGRRLAQIGVLGWTIVAPTLAALALGRWLDRMFATRVFFSAPLLMLGAALGLWLAWRWMKAQQHGDRDD
>NZ_CP009150.1|WP_004188221.1|2567731_2568187_-|F0F1-ATP-synthase-subunit-epsilon
MGAELRVTIATPARVCVDDLPIVSLRAEDASGAFGIRAGHVDFVTLLRASVVRWRTADGATHYAALDGGVLRVTRGARIEIACRDAVLGESLAELEAVVRGVRATQLDEKRRARVDETRLHAQAVRRLLTYLRPEHAKDGVHAPLKPETLE
>NZ_CP009150.1|WP_038728004.1|2568176_2569763_-|F0F1-ATP-synthase-subunit-beta
MADPQATNGTGAACAERDASDVGDARDEGAGRVVAVRGAVVDVAFDGGALPALNEALTIPVDGAAPILAEVHAHLSDAAVRALALGPTGGLRRGAAVRATGGPIRVPVGDAVLGRLLSVTGAPGDDGAALAADVERRPIHRGAPPLAEQKSANALFATGIKVIDLLAPLAQGGKAAMFGGAGVGKTVLVMELIHAMVERYRGISVFAGIGERSREGHEMLLDMRGSGVLGRTVLVYGQMNEPPGARWRVPLTALAIAEYFRDERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIASVEGAAVTAIEAVYVPADDFTDPAVTAIAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVGEAHVEVAIEVRRVIEHYRELQDVIALLGIDELGADDRRLVGRARRLQRFLTQPFAVTEAFTGQAGASVEIADTIAGCRAILRGDCDDWRESSLYMVGTLDDARRKEAAAREADARREAAAAASGAGPGTTSDPASGSAEPQGARHGR
>NZ_CP009150.1|WP_038753816.1|2570123_2571917_+|polyhydroxyalkanoic-acid-synthase
MDTRHAPESGAPDAPLPAHPPASYAPESPYRIFDLAKEASVAKLTSGLSPASLQLALADWLIHLAAAPGKRAELATLALRHAALLGQYLLEAATGRTPAAPAQPSPGDRRFRAGAWQLEPYRFWHQSFLLAEQWWRAATRDVPGVSPHHEDVVAFSARQMLDTFAPANYVATNPEIAQRTALTGGANLAQGVWNYLDDVRRLITKQPPAGAEQFELGRNLATTPGRVVFRNHLIELLQYSPTTPDVYAQPVLIVPAWIMKYYILDLSAHNSLIRYLVGEGHTVFCISWRNVDASDRDLSLDDYRKLGVMDALDTIGAIVPGEKIHATGYCLGGTLLSIAAAAMANTGDDRLASVTLLAAQTDFAEPGELQLFIDDSEIHFLESMMWERGYLGAHQMAGSFQLLMSNDLIWSRVIHDYLLGERTPMIDLMAWNADSTRMPYRMHSEYLRHLFLDNDLATNRYVIDGQTVSVHNIRAPFFVVGTEHDHIAPWRSVYKIHYLSGSDVTFALTAGGHNAGIVSEPGHAKRHYRMKMTAAAAPSISPDEWLAGATDFEGSWWPAWHAWLARHSSPQRVAPPPLGKPGAHTLGDAPGTYVFQK
>NZ_CP009150.1|WP_004524980.1|2571927_2573331_+|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase
MDREILQNRPFDSLAIGDSASLVRTASRDDIDLFAAMSGDVNPAHLDAAFAAHDLFGHVVVHGMWTGALVSAVLGTKLPGPGTIYLDQTLEFRHPVAPGDTITATVTVAEKRPEKRIVLLDTRCTNQDGHVVLRGTATVIAPDTPITWERVPGPEVAVRRHDRYETFVRDAREQPPLRTAIVHPCSPDALRAAIDARDANLIEPILIGPQAKIRAIADAAGVDLAGVPIEAVEHSHAAAARAVEMGGAGEVAALMKGSLHTDELLAAVIGPASRLRTERRISHVYAMDVPAYPKPLLITDAAINIAPTLEQKRDICQNAVDLLHVLGVERPRVAVLAAVETVNPKMPSTLDAAALTVMAARGQIAGAIVDGPLAFDNAVSAVAAMSKGIASPVAGDADVLLVPDLEAGNMLAKQLMYFAGADAAGLVLGARLPIILTSRADSLRVRIASAALAKLVAERTRAGALAS
>NZ_CP009150.1|WP_004529184.1|2573327_2574506_+|acetate/propionate-family-kinase
MSEPLLLTFNAGSSTLKIGLYSVANGEPAPLGRGKIDFNRAPLQFEYANGGEAHAVPLAAPVTDDLHAVLDEALGWIDAHLSVHELVSVGHRVVHGGDTFDGPVRIDERTLDAIAALVPLAPLHQPQSVRLIRALRHLRPHLPQVASFDTAFHRTQSDLVRRFALPRALFDAGIKRYGFHGLSYRYVAGRLRERHPSIARGKVVAAHLGSGASLCALDAGVSRDTSMGFSTLDGIPMATRCGALDAGVVLHLQKTLGRTLDDVEQMLYHRSGLLGVSGVSGDARALLADPSAGARDALELFAFRIAGETARLAATLGGLDALVFTAGIGEHQPQTRAAVCERLRWLGVELDAHANARNAETVSRDGSRVAVLVVPTDEEQVIARDAASVLHA
>NZ_CP009150.1|WP_162483253.1|2575307_2576798_-|hexose-kinase
MCAALARRARCSILAASGKRQAASGKRQAASGKRQAASGKRQAASGKRKRQAASGKRQAASGKRQAASGKRQAASGKRQAASGKRQAASGKRQAASGKQQAASSKQQAASSKQQAASSKQQAASSKQQAASSSRSSPGLMVRRRIERKHCGACPPRSTREPRTRASRCVVFPSRIPTLKPNVTMPEIVTLTPNPAIDVATCVERVTDTRKLRCGPARRDPGGGGINVARVLTRLGADCSAVYLAGGGTGLALRGLLADEGVRAHGIDIAGETRENFSVLETSTGREFRFVLPGPALAAHEWPRCVEALGRLADASRYLVMSGSLPPGMPDDCYARLARRASARGVRTVVDTSGPALAAALDAGVYLVKPSLGELRALTGLPLEDDGARLAAARAIVAGGRAQIVALTLGDAGALVVSRDDAVRLPGVKVAVRSAIGAGDSFVAGLVAALNRGANVADAARHALAAASASLLSTGTALGTKEDIARIYRELPGTIDA

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Crispr_ID: NZ_CP009150_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009150_2

3014777-3014922

Orphan

Consensus_repeat	Method
GCAGAGGCGCCGCCGCCGGAATACCCGATCATCGGGATGCTCGATCGCCGAAG	PILER-CR
CGGAATGCCCGATCATCGGGATGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP009150_2

>merge|NZ_CP009150|2|3014777-3014922|PILER-CR,CRISPRCasFinder
TCGTCGGGATGCTCGATTGCCGCAGTCACCCTCCGCCGGGGCTCCGTCGTCGGAATGCCCGATCATCGGGATGCCTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGCCGGAATACCCGATCATCGGGATGCTCGATCGCCG

>NZ_CP009150|2|1|3014777-3014922|PILER-CR
TCGTCGGGATGCTCGATTGCCGCAGTCACCCTCCGCCGGGGCTCCGTCGTCGGAA	TGCCCGAT
CATCGGGATGCCTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGCCGGAAT	ACCCGATCA
TCGGGATGCTCGATCGCCG

>NZ_CP009150|2|2|3014827-3014912|CRISPRCasFinder
CGGAATGCCCGATCATCGGGATGC	CTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGC
CGGAATACCCGATCATCGGGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009150.1\|WP_038760030.1\|3022268_3024101_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223732
NZ_CP009150.1\|WP_004557971.1\|3005368_3005809_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176863
NZ_CP009150.1\|WP_038760045.1\|3006110_3007226_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|378454
NZ_CP009150.1\|WP_004187469.1\|3013706_3014102_-\|TraR/DksA-C4-type-zinc-finger-protein	unknown	unknown	gnl\|CDD\|224648
NZ_CP009150.1\|WP_038760034.1\|3027001_3028111_-\|porin	unknown	unknown	gnl\|CDD\|238208
NZ_CP009150.1\|WP_038760024.1\|3000381_3001833_-\|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|237001
NZ_CP009150.1\|WP_009941268.1\|3024229_3024559_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009150.1\|WP_038760026.1\|3015498_3016764_+\|polyhydroxyalkanoate-depolymerase	unknown	unknown	gnl\|CDD\|130908
NZ_CP009150.1\|WP_004523279.1\|3021240_3022272_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|236122
NZ_CP009150.1\|WP_004187137.1\|3024562_3025012_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341411
NZ_CP009150.1\|WP_004205322.1\|3007523_3008459_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NZ_CP009150.1\|WP_038760028.1\|3018895_3020707_+\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	unknown	unknown	gnl\|CDD\|225098
NZ_CP009150.1\|WP_038760047.1\|3009130_3011029_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_CP009150.1\|WP_038733422.1\|3011300_3013574_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|369639
NZ_CP009150.1\|WP_004529498.1\|3026182_3026617_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NZ_CP009150.1\|WP_004523292.1\|3002883_3004116_-\|3-methyl-2-oxobutanoate-dehydrogenase-(2-methylpropanoyl-transferring)-subunit-alpha	unknown	unknown	gnl\|CDD\|223997
NZ_CP009150.1\|WP_024431680.1\|3008474_3009071_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009150.1\|WP_038725491.1\|3016979_3018821_+\|ribonucleotide-reductase-like-protein	unknown	unknown	gnl\|CDD\|180772
NZ_CP009150.1\|WP_038760032.1\|3025479_3026133_+\|SagB/ThcOx-family-dehydrogenase	unknown	unknown	gnl\|CDD\|380318
NZ_CP009150.1\|WP_004532536.1\|3001834_3002878_-\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101

Protein	Function_ID	Function_description	E-value
NZ_CP009150.1\|WP_038760030.1\|3022268_3024101_+\|STAS-domain-containing-protein	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	8.34597e-107
NZ_CP009150.1\|WP_004557971.1\|3005368_3005809_+\|SRPBCC-family-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	7.66567e-25
NZ_CP009150.1\|WP_038760045.1\|3006110_3007226_-\|SRPBCC-family-protein	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	1.9875e-11
NZ_CP009150.1\|WP_004187469.1\|3013706_3014102_-\|TraR/DksA-C4-type-zinc-finger-protein	gnl\|CDD\|224648	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms].	1.7869e-14
NZ_CP009150.1\|WP_038760034.1\|3027001_3028111_-\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	9.13782e-51
NZ_CP009150.1\|WP_038760024.1\|3000381_3001833_-\|2-oxo-acid-dehydrogenase-subunit-E2	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	1.62258e-132
NZ_CP009150.1\|WP_038760026.1\|3015498_3016764_+\|polyhydroxyalkanoate-depolymerase	gnl\|CDD\|130908	TIGR01849, unnamed_protein_product, polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some [Fatty acid and phospholipid metabolism, Degradation].	3.1294e-115
NZ_CP009150.1\|WP_004523279.1\|3021240_3022272_+\|nitroreductase-family-protein	gnl\|CDD\|236122	PRK07877, PRK07877, Rv1355c family protein.	3.7258e-30
NZ_CP009150.1\|WP_004187137.1\|3024562_3025012_-\|CBS-domain-containing-protein	gnl\|CDD\|341411	cd17775, CBS_pair_bact_arch, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and archaea. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.39507e-50
NZ_CP009150.1\|WP_004205322.1\|3007523_3008459_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.67997e-62
NZ_CP009150.1\|WP_038760028.1\|3018895_3020707_+\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	gnl\|CDD\|225098	COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown].	4.07716e-75
NZ_CP009150.1\|WP_038760047.1\|3009130_3011029_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	1.97263e-34
NZ_CP009150.1\|WP_038733422.1\|3011300_3013574_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|369639	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	8.12414e-57
NZ_CP009150.1\|WP_004529498.1\|3026182_3026617_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	9.00264e-33
NZ_CP009150.1\|WP_004523292.1\|3002883_3004116_-\|3-methyl-2-oxobutanoate-dehydrogenase-(2-methylpropanoyl-transferring)-subunit-alpha	gnl\|CDD\|223997	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion].	5.32689e-143
NZ_CP009150.1\|WP_038725491.1\|3016979_3018821_+\|ribonucleotide-reductase-like-protein	gnl\|CDD\|180772	PRK06948, PRK06948, ribonucleotide reductase-like protein; Provisional.	0
NZ_CP009150.1\|WP_038760032.1\|3025479_3026133_+\|SagB/ThcOx-family-dehydrogenase	gnl\|CDD\|380318	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC. This family is the oxidase domain of NRPS (non-ribosomal peptide synthetase) and other systems that modify polypeptides by cyclizing a thioester to form a ring. These include EpoB, part of the epothilone biosynthesis pathway; TubD, part of the tubulysin biosynthesis pathway, MtsD, part of the myxothiozol biosynthesis pathway; IndC, part of the indigoidine biosynthesis pathway and TfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.	5.8246e-20
NZ_CP009150.1\|WP_004532536.1\|3001834_3002878_-\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	0

>NZ_CP009150.1|WP_004187469.1|3013706_3014102_-|TraR/DksA-C4-type-zinc-finger-protein
MAAFDEHQLQVLGALLRACRQALQADVRAGERQRADEPYANLAGPAPDEGDEANADLFVDVDHALLGMKLAELRDVDAALQRIARRDYGCCADCGQPIAYERLLARPTALRCAPCQRAHERRFATQPRPSL
>NZ_CP009150.1|WP_038733422.1|3011300_3013574_-|FAD-dependent-oxidoreductase
MREFDYLLVGGGIASVTAARTLRGEDASASIAILCGEPVLPYQRPPLSQEWLMGAVQPASITLHDAAFYAAQRIDIALGVRAEQLDRAKRIVRTSSGATFRYGKLLIATGASAKAPALPGFGLDGVHVLHTFAQAQALKDAAAHARRATVLGGGFLGVEIAATLQALGLQVTLVERAPGVMPSLRAPALGGHFEALCRARGIDVLTRCEVRRVLGAQCVEAVETSDGGTRPCDLFVAAVGVTPNCGWLDGSGLALGDGVEVDAFLQTADPDVFAAGDVAHFDDPIFGVRRRIEHWDNAVRQGRIAARNMLGHRLPYRDVSIFYGSVFGLSYNLLGYPVGATETIERGAFDEASYMQLYLADDVLRAAFTIDRPAVEIAALNDAIRLHVNVAARKTKLSDPNYPLDKLPVQTILILQGGGALGAFECGAVKALEQHGVRPDVISAVSIGAFNGAIVASHPKGATKALEAFWRELSIALPLPYESQWREAWLSSYVLSFGVPNFLKPQWSQLGFDADRLRAKWTSFFDATAIEQLIARYVDFDSLGMSPTRLLIGAVDVETGEPRIFDSYVDRLSPAHVLASGSLPPGMPWTVVDGRPYWDGGVVSNSPLDLVIARCGQIGGRVFIVDLFSGSKALPTNLVEVMLRREEIAYMDRVRNDLRFEEYASDFRDLVDGILAHVDAPSANEIRQQPLYIRLMGNRAAIDIARITLNREGRLSFIEDYDFSSDAIAQLQQQGYDAALVALANGRSRRRRGRRRA
>NZ_CP009150.1|WP_038760047.1|3009130_3011029_+|GMC-family-oxidoreductase
MLGATRSTLWGSRERPRIAAARAPGAVASRMREEARECAGPRGAGRAPHRATAAGGKTGRRTVRAPSRARAGSNNQKVNRMKQQSYDYDYVVVGSGFGGSVSALRLSEKGYRVLVIEQGRRWTPENLPESTWNLSRWQWRPALGLHGFFSMRFFRHVVVLHGNAVGGGSITYANTLLVPPDKVWREGTWAGLEDWERVMPAHYATAKRMLGVVTNRRMDAADFRLKDMAKLIGVEKSFYPTEVGVFFGDDADAPGTRYADPYFGGAGPERTSCIGCGGCMVGCRHGAKNTLDRNYLYLAERLGAQVREQTKVVDVRPLDARADGAAGYAVEAVSLAAGARGAKSRLTCRGVVFAASSLGTQDLLMRLKEKGSLPRLSDALGKRVRTNAESLIGVRFPKSRVDLSKGVAIGSGIYIDEHTHIEATRYPSGSDTMGLLTTVLTRGAPGGLRVLVWLGALAKLVLTRPLSAWRMIDPRGFARETMIFLCMQTLEGHLTMRLKRRWFWPFSKQLATSGAKIPAYIPAANDFAQKAARALGGVPMTSLTEILLNVPMTAHCMGGAAMARDARDGVCDGRSRVFGYRNMYVCDGSVLGANLGVNPSLTITALAEHAMSHVPAAREQRWDSTAETPVAA
>NZ_CP009150.1|WP_024431680.1|3008474_3009071_+|hypothetical-protein
MCRARGIGRQARGNATAPSPIAAAAIGARPRSAPRGPRICISDAGRLAAARSAFAMHQERRKRNADRHGTHQYDADSRAAPREAPRFEHEPKKQRDAAQHEVDRDRAAREIRERIEHKARPDVRRAERPISQDVAQTPIGAAGAISPSTAHSIFLEIGLALAGRPIQVRRNRAPFTHGTPRRRPARGPTARTASPAPV
>NZ_CP009150.1|WP_004205322.1|3007523_3008459_+|LysR-family-transcriptional-regulator
MIQNLRQLDLNLLLVFDALMQEQNLSRAAIRLHMSQPAVSNALTRLRQQLGEPLFTRTARGMTPTAQARTLYEPVRQALYLLQIGLGPQADFEPDTHHLFKLSMNDYGQTVLLPDLLAHIKSRAPNVMLSVQSDDAGSIPAQLTTGTLDLAIDYLHFDNPELCYEPLHEEHLVVIGRAGHPAFAGGLALRGYEESGHVSIQPRDRRGSPLEIVLGSARVRRVVHLQVPHYLTIPALVAKSDLLGTIPRRLAERFADVYALQIAPLPIDIAPIQVSLIWHRQQDAQPGLRWLREQVVLTHRAIIGCGEHAPA
>NZ_CP009150.1|WP_038760045.1|3006110_3007226_-|SRPBCC-family-protein
MTQDVTVFRARYRASVHPRYNAWLHGGFVLAYGCAAIAFFLKDVARVSAVQWASVPAAFLLFNWLEFTVHRHVGHVKRRFGAMFYRRHTGDHHSFFANEQIAYREARDWRVILFPAWLIVVFSLGLFALHAVLGRFDANVAGLFASTMLGGYLLYECVHACEHLPDAHPLAKWLWIRQMRVLHRVHHRDALMRSCNFDVIWPLMDWLHGTLRWSEAPGADMSTRMRHEIDIACAGADVLAYASDASRWPEWHPSSLRVDGPAGSLAAGSRFDEDVRAAGRVDRLHWDVVRNEPGVMWQARAANTAGSLRILLTYECSGGPRGARFVRTLHYHSPNPLLRLANALVMRGRVERESAYSLTLLKRRLEAARDA
>NZ_CP009150.1|WP_004557971.1|3005368_3005809_+|SRPBCC-family-protein
MKQQRIEIAEEFDAPVHQVFRFFSEHENLKSIFSPARIRRISDGEPARNGVGSAREMRVPGAPPFVETVTAYQENELIEYRITRGSPLRDHLGVMRFVPIDERRTYFHYVITFEGKVPFVAPVVRHVLEGSIRRGLGKVATRRLWG
>NZ_CP009150.1|WP_004523292.1|3002883_3004116_-|3-methyl-2-oxobutanoate-dehydrogenase-(2-methylpropanoyl-transferring)-subunit-alpha
MSQYGPLRLHVPEPTGRPGCKTDFSYLRLSPAGKVRKPPIDVAPADTSDLAYGLVRVLDEHGRAVGPWAPDLDPDILRKGIRAMLKTRIFDARMQIAQRQKKISFYMQCLGEEAIAVAHTLALERGDMCFPTYRQQGILMVREYPLVDMMCQLMSNERDPLKGRQLPVMYSTRDAGFFSISGNLATQFIQAVGWAMASAIKGDTRIASAWIGDGATAEADFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGEGATFAGRGVGCGIASLRVDGNDFLAVYAASRWAAERARRNLGPTLIEWVTYRAGPHSTSDDPTKYRPGDDWTNFPLGDPLERLKRHMIGIGVWSEQDHEDTKAALEAEVLAAQKEAERYGTLADEHVPNVASIFEDVYKEMPAHLRRQRQQLGV
>NZ_CP009150.1|WP_004532536.1|3001834_3002878_-|alpha-ketoacid-dehydrogenase-subunit-beta
MTTASREGPAASPMTMIQALRSAMDVMLERDGNVVVFGQDVGYFGGVFRCTEGLQNKYGKSRVFDAPINEGGIVGAAVGMGAYGLRPVCEIQFADYFYPASDQIVSEAARLRYRSAAEFIAPLTIRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLISAIENDDPVIFLEPKRLYNGPFDGHHERPVTPWSKHPASLVPDGYYTVPLDSAAIVRAGGDVTVLTYGTTVHVSLAAAEETGIDAEVIDLRSLWPLDLDTIVESVRRTGRCVVVHEATRTCGFGAELIALVQEHCFHWLEAPVERVTGWDTPYPHAQEWAYFPGPNRVGDALRRAMEN
>NZ_CP009150.1|WP_038760024.1|3000381_3001833_-|2-oxo-acid-dehydrogenase-subunit-E2
MGVHVIKMPDIGEGIAEVELGLWHVKVGDRVKEDQAIADVMTDKASVEIPSPVTGVVVALGGKEGDVLAVGSELVRLEVEGDGNHKAEPDGGARAAAAQPERVADTAHAHAGAAAKSARGEHGAGHGRDDARAASSGTSSGASHTQHAEREARGHRESSECREDRSVSRGASQTDVERGPASPPPARRPGERPLASPAVRKRAWDLGVELRYVHGTGEAGRILHEDLDAYLQGRGAAAQRARGGQAAYVERHDEEAVPVIGLRRKIAQRMQDAKRRIPHFSYVEEIDVTELEALRAELNRKYGDTRGRLTVLPLLARAMVIALREFPQINARYDDEAGVVTRHGAVHLGIATQSKAGLMVPVVRHAEARDPWSIAAEVARLADAARAGRAERDELSGSTITITSLGALGGIASTPVINSPEVGIVGVNRIVERPMFRGGAVVARKLMNLSSSFDHRVIDGMDAAEFIQAVRALLEQPALLFVE
>NZ_CP009150.1|WP_038760026.1|3015498_3016764_+|polyhydroxyalkanoate-depolymerase
MLYAWLEAQREFFRACQPWAGAAQRAGAGARPAGWPTWGPMARAADAVPAPPSFAIASIEIDGAAVPVDECVVDDTPFCALRKFSRRLRGDAAARPAVFLCTPLAGHHAVMLRETVETILATHDVYVTDWRNARDVPLEAGAFGLDDYVCTLERFVAGAAGDGLHMMAVCQATVPALAAVALLAARDVHVTSVALLGGPVDTRSHPTLIDRFALEHDLDWFRRTAIDIVPPPYAGAGRRVYPGFIQHAAIIVAHPQRRASLESRYWAAWMTGDFAAAARCLREMNEYGAVLDMTERYFLDTIRVIFHERLLAQGRWSIGRRLVAPQRLTRTALCTIEGGRDDIAGAGQTHAAHALCDAVPDAVRERITEPDCDHYDLFLGPRWRRTIHPALDAFWTRAEAARAAAGEPRPTAERVERRIAH
>NZ_CP009150.1|WP_038725491.1|3016979_3018821_+|ribonucleotide-reductase-like-protein
MRTINKRTRAIAHADSFVRMIGDMDDQPICDAVFADRYALPGEHSRAQACARVARALALAEPMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHTAPPRDAPGGALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIGATSPCGAQPLPPYGSAMLGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAYPLCDRHAHLDALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGAPGMRAENHAHRLFRSLRGERAALPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV
>NZ_CP009150.1|WP_038760028.1|3018895_3020707_+|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein
MTTGAVAARRLPRRGTARGRRAPSRAFTIHGGDEMRRSRPPKPAKPAAVRRRPHGAARAHAIRGNGPQRRAVRERAARRLSRDIDAALRRASTYPHPAGPIVRIETHLSVVYLVGRFAYKRLKPFDFGFANFSELATRRRACEAELALNRPLAAPIYLAAGPLVRRARGLRLFGAGAAVDHVVRMRRFDERMLFSRLLARGALDAADIDAAATRLAAYHLHAPRDIPRRAYGSARELRRQLDDMLAPLERALGAALPASLRAWCVRRCDELAAHLDARRADGYVRACHGDLHLNNVVKRGRDALMFDCIDFDDALRWIDVINDLSFLLMDLHAHDRAALAHRLLNRWLDETGDFAGLAALPLYVAYRALVRALVATMRAGGDAAARAARIERARRYVDVAAHAARARRPCLLLCHGYSGSGKSVASRALADVSGAIRLSSDSERKRARPFAAVDARPLPASAYTPQQIDAQYERLRALARDVLRAGYTALVDATFLSHARRARFFALARELGVPVYVLDFHASRACLERRVDARAAARDDRSDAGAAVLATQRASADPLDADERARAIGFDTDVPLATLRSAGYWRPVLDALDAARVDAQATR
>NZ_CP009150.1|WP_004523279.1|3021240_3022272_+|nitroreductase-family-protein
METSPLKTTTPEAIPPFDPSASVEDKLRLAIHYAILAPSSHNTQPWRFMVGDGSVMLCADRLRALSVVDPYDRELLISCGAALLNLRVALSRFGFAYVIDMFPSPSDPDVIALVRLDPHGYHDESLVPLFDAILERVTTRTPYANEAVPCDVQRALVDAGAAEGAEIACVDAPHALDEIAELIADADRLQFADPRFRRELANWVHPRRHDDGMPAFAAGVPALLDFATPVVASAIRTFDLGGGLAAMHHKLVDGSPLIVGISTASDDRDAWVAAGQALERVLLVAAAAGLTASYLNQPIEIDALRERLRPLLHVDAHPQLLLRIGRGPVVAHAPRRPLMDVVS
>NZ_CP009150.1|WP_038760030.1|3022268_3024101_+|STAS-domain-containing-protein
MTERERAARGRNDARRGGSDSGGDDEAWRRWLPGIATLRTYRRAWLARDLYAGVALTAVLVPVGMSYAQAAGLPVIAGLNASIAALVGYAIFGPSRILVLGPDSALAALIAGAIAPLAHGEPAHAVALAAALALMSGGFCVLAGLLKLGFVTDLLSKPIQYGYLNGLALTLIASQLPSLLGTVPLGGTFVDQVASLAATVAQGRIDFASLALGGGCLAGIALLRRVAPAWPGMLIAVAGASIVAAWLGAAPDAGGAHAHVAYAHVANAHVALVGSLAGTLPPLGLPSISLADASRLIAGALAIAMVSVADISVLSHVFAQHDGSETDRNQELCALGAANLLAGMLRGCAVSSSASRTPVALAAGARTQLTSLVAAACIALLLVAPTLLARVPLAALAAVVVYSANALVDVRAIVRLDRVRRGECAVSVLCFAGVVLLGVVPGILLAVGLSLLSFVWRAWHPYDAVLGRVEGMHGYHDVSRHPGAALTRGLVAFRWDAPLFHANATIFRDHVRDAIAEAGAPVRCVVIAAEPITDVDVTAADMLATLRDELAARRIALVFAEMKGPVKDRLRTYGLFEKIGADHFFPTVTDAIEHFTRMRKDVATARRARR
>NZ_CP009150.1|WP_009941268.1|3024229_3024559_-|hypothetical-protein
MLSSRLVSSRLAPCCVYIDIQGEGDVDVDAEGNGNGNIDVIDSKRCEPSGVEPVERAVRRPRYRAQSGCLSGIHRNGIVMPDPMPPTNRFDRLRASAVIVDRTKPRRSP
>NZ_CP009150.1|WP_004187137.1|3024562_3025012_-|CBS-domain-containing-protein
MNAAEICTREVVACRRTDTVLDAAHLMRDRHVGDLIVVDDAGHAHAPVGMLTDRDIVLSLIAKEVDPAALFVGEIMSAPAAVVHEHDSLWTIAQRMRLTGVRRMPVVNADGALVGMVSVDDLLASVAALFDEIASISRRQIHFEEKARD
>NZ_CP009150.1|WP_038760032.1|3025479_3026133_+|SagB/ThcOx-family-dehydrogenase
MSDPELLTYQPIAVALPEPAEAGAPAVIDLPPPDLGAGLPLMSALSLRASTREFSSAALAPTTLGELLWAADGVNRPTTGGRTAPSAHAFNEIDIYAALPDGVYRYDAALHRLLLKHAVDARNLTGYQDFVGAAPLDLIYVVRMSRLLSMPKPLRETFSAVAAGAIAQNVALYCASTGLGCVVRGWINHRLLAEALSLNEDELPILAQTVGKPAAHP
>NZ_CP009150.1|WP_004529498.1|3026182_3026617_-|Hsp20/alpha-crystallin-family-protein
MSNVTRYDPFSLEPVSDLFQGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGVDKNDINVQIDGNTVSISAKVERNKELKEGERVIRRERYSGEFARTFSLANELDRDAASAQYQDGVLSLTLPKKASSEKKKLTIG
>NZ_CP009150.1|WP_038760034.1|3027001_3028111_-|porin
MMNAKSIAAAALAVAQAGLAHAQSSVTLYGALDAGVLWQNTSAASFSPTAPNTGAVGRFKDGGVYSSLWGIKGTEDLGGGYRVNFRLQGAFDGGTGKFGLSDAPGAVAAFNQIATLGVSGPFGTFNAGRQIVPMIYAMADTDVRAARFFGSVLTAWLGLNTAAGWPGNSTNAPIGALYDSDALVYQSPAFGGASLALEYAPGGVPGGVQRGARASNALNLAAVYYNGHDTNPAPGASATGLDNNRFVYVGAQYKLKDVAVSASYGNGRNPARGDRVNLDMFAFGLGYRVSPFFRVSSGVYYLKDRNRLANRSTSIVLGADYELSKHTTLYAQGGRVDNRGTMAQMLAYGQPVAPGLATTAAMLGMRHSF

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Crispr_ID: NZ_CP009150_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009150_3

3135351-3135473

Orphan

Consensus_repeat	Method
CAACGCACAACGCACAACGCACAAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP009150_3

>merge|NZ_CP009150|3|3135351-3135473|CRISPRCasFinder
GAAGGGAAAATGCACAATGCGCAGCCCGCAGCCCGCAGCCCGCAGCCCGCAGCCCGCAGCCCGCAGCCCGCAACGCACAACGCACAACGCACAACGCACAACGCACAACGCACAACGCACAAC

>NZ_CP009150|3|3|3135351-3135473|CRISPRCasFinder
GAAGGGAAAATGCACAATGCGCAGC	CCGCAGCCCGCAGCCCGCAGCCCGCAGCCCG
CAGCCCGCAGCCCGCAACGCACAAC	GCACAACGCACAACGCA
CAACGCACAACGCACAACGCACAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009150.1\|WP_004532424.1\|3139370_3140156_-\|3-hydroxybutyrate-dehydrogenase	unknown	unknown	gnl\|CDD\|184025
NZ_CP009150.1\|WP_004194543.1\|3128056_3129088_+\|L-threonine-3-dehydrogenase	unknown	unknown	gnl\|CDD\|180054
NZ_CP009150.1\|WP_004532671.1\|3126068_3126677_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380339
NZ_CP009150.1\|WP_038761908.1\|3129457_3130111_-\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NZ_CP009150.1\|WP_004196513.1\|3130200_3130818_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP009150.1\|WP_038758402.1\|3137591_3138125_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009150.1\|WP_004539575.1\|3126844_3128044_+\|glycine-C-acetyltransferase	unknown	unknown	gnl\|CDD\|235893
NZ_CP009150.1\|WP_004529557.1\|3125608_3125989_-\|DUF2471-family-protein	unknown	unknown	gnl\|CDD\|371166
NZ_CP009150.1\|WP_009932354.1\|3134192_3135110_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182085
NZ_CP009150.1\|WP_004194445.1\|3143021_3143849_-\|siderophore-interacting-protein	unknown	unknown	gnl\|CDD\|99790
NZ_CP009150.1\|WP_004525615.1\|3141400_3141997_+\|undecaprenyl-diphosphatase	unknown	unknown	gnl\|CDD\|239480
NZ_CP009150.1\|WP_038761911.1\|3132938_3134024_-\|tartrate-dehydrogenase	unknown	unknown	gnl\|CDD\|273963
NZ_CP009150.1\|WP_004194457.1\|3135651_3136329_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224931
NZ_CP009150.1\|WP_004194452.1\|3140202_3140943_-\|acetoacetate-decarboxylase	unknown	unknown	gnl\|CDD\|179402
NZ_CP009150.1\|WP_004194444.1\|3136533_3137157_+\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NZ_CP009150.1\|WP_009922803.1\|3131619_3132636_-\|succinylglutamate-desuccinylase/aspartoacylase-family-protein	unknown	unknown	gnl\|CDD\|349481
NZ_CP009150.1\|WP_004196519.1\|3142019_3142256_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009150.1\|WP_004203374.1\|3130918_3131398_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|377770
NZ_CP009150.1\|WP_038760625.1\|3143888_3144605_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP009150.1\|WP_004194462.1\|3138135_3139374_-\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|132848

Protein	Function_ID	Function_description	E-value
NZ_CP009150.1\|WP_004532424.1\|3139370_3140156_-\|3-hydroxybutyrate-dehydrogenase	gnl\|CDD\|184025	PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenase; Provisional.	1.07821e-163
NZ_CP009150.1\|WP_004194543.1\|3128056_3129088_+\|L-threonine-3-dehydrogenase	gnl\|CDD\|180054	PRK05396, tdh, L-threonine 3-dehydrogenase; Validated.	0
NZ_CP009150.1\|WP_004532671.1\|3126068_3126677_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	2.3476e-17
NZ_CP009150.1\|WP_038761908.1\|3129457_3130111_-\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	4.15467e-46
NZ_CP009150.1\|WP_004196513.1\|3130200_3130818_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.41128e-11
NZ_CP009150.1\|WP_004539575.1\|3126844_3128044_+\|glycine-C-acetyltransferase	gnl\|CDD\|235893	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional.	0
NZ_CP009150.1\|WP_004529557.1\|3125608_3125989_-\|DUF2471-family-protein	gnl\|CDD\|371166	pfam10616, DUF2471, Protein of unknown function (DUF2471). The function of this family is unknown. Members all come from Burkholderia spp. BDAG_04162 is annotated as Serine/threonine-protein kinase, but this could not be confirmed.	2.35693e-27
NZ_CP009150.1\|WP_009932354.1\|3134192_3135110_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182085	PRK09801, PRK09801, LysR family transcriptional regulator.	5.17459e-103
NZ_CP009150.1\|WP_004194445.1\|3143021_3143849_-\|siderophore-interacting-protein	gnl\|CDD\|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	3.05955e-88
NZ_CP009150.1\|WP_004525615.1\|3141400_3141997_+\|undecaprenyl-diphosphatase	gnl\|CDD\|239480	cd03385, PAP2_BcrC_like, PAP2_like proteins, BcrC_like subfamily. Several members of this family have been annotated as bacitracin transport permeases, as it was suspected that they form the permease component of an ABC transporter system. It was shown, however, that BcrC from Bacillus subtilis posesses undecaprenyl pyrophosphate (UPP) phospatase activity, and it is hypothesized that it competes with bacitracin for UPP, increasing the cell's resistance to bacitracin.	1.38933e-42
NZ_CP009150.1\|WP_038761911.1\|3132938_3134024_-\|tartrate-dehydrogenase	gnl\|CDD\|273963	TIGR02089, Probable_tartrate_dehydrogenase/decarboxylase, tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively. [Energy metabolism, Other].	0
NZ_CP009150.1\|WP_004194457.1\|3135651_3136329_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	gnl\|CDD\|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	3.17702e-15
NZ_CP009150.1\|WP_004194452.1\|3140202_3140943_-\|acetoacetate-decarboxylase	gnl\|CDD\|179402	PRK02265, PRK02265, acetoacetate decarboxylase; Provisional.	0
NZ_CP009150.1\|WP_004194444.1\|3136533_3137157_+\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	4.24152e-46
NZ_CP009150.1\|WP_009922803.1\|3131619_3132636_-\|succinylglutamate-desuccinylase/aspartoacylase-family-protein	gnl\|CDD\|349481	cd06910, M14_ASTE_ASPA-like, Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like; uncharacterized subgroup. A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.	2.52432e-128
NZ_CP009150.1\|WP_004203374.1\|3130918_3131398_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|377770	pfam07080, DUF1348, Protein of unknown function (DUF1348). This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.	9.22279e-97
NZ_CP009150.1\|WP_038760625.1\|3143888_3144605_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	6.54517e-21
NZ_CP009150.1\|WP_004194462.1\|3138135_3139374_-\|patatin-like-phospholipase-family-protein	gnl\|CDD\|132848	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	9.31206e-58

>NZ_CP009150.1|WP_009932354.1|3134192_3135110_+|LysR-family-transcriptional-regulator
MNNSPNLDDLRVFSVVVRLASFSAAAEQLAVSPAYVSKRVALLEKQLGTRLLHRSTRRVAVTEAGERVYAWTEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLGFNERYPQLNVRLDLFDRLVDVAGEGFDLDIRIGDEIPDHLIAKRLATNYRVLCASPGYLARYGTPRQLADLGAHQCLAIKERDHPFGVWRLTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIVLRSIWEAGPLLASGELRRVLPEASQPANVWAIYPARLAASAKVRVCVDFLVDAFAHLNERANGG
>NZ_CP009150.1|WP_038761911.1|3132938_3134024_-|tartrate-dehydrogenase
MSEKVYRIAVIPGDGIGMEVMPEGLRALDAVSRRFGLRFAYEPIEWASCDYYAKHGQMMPDDWKTQLSGMDALLFGAVGWPETVPDHISLWGSLIKFRREFDQYVNLRPARLFDGVPCPLAGRKAGDIDFMIVRENTEGEYSAVGGTMFEGTEREFVVQQAVFTRHGTERVLKFAFELAQRRAKRLTVATKSNGIAISMPWWDARAAEMAARYPDVAWDKQHIDILCARFVMQPDRFDVVVASNLFGDILSDLGPACTGTIGIAPSANLNPERNFPSLFEPVHGSAPDIAGKHIANPIAMIWSAAMMVDFLGAGTGPAREARDAIVAAIEHVLKHGPRTRDMGGRASTREVGDAIVAHLLG
>NZ_CP009150.1|WP_009922803.1|3131619_3132636_-|succinylglutamate-desuccinylase/aspartoacylase-family-protein
MTESAPVFPHYSIEVDFPDLEAHRTGNAGVDYVHRFDSGVPGPRVMINALTHGNEVCGAIVVDALLKRGLRPRRGVLTVSFANVTAYERFDPARPDAARFVDQDFNRVWAPAVLDDLSQHSVELDRARAIRPFVDEADWLLDLHSMHERSAPLIVAGPLAKGTALALRIGAPATVIRDEGHPEGKRMRDYGGFGDPASAKNALLVECGQHWEARAVAVARDSTARFLMASGIVDERDLPADWFLPLATTMRIVQVTQPVVATSSDFRFADAYTGLEHFAEAGAVIGWSDGKPVTTPYPDCVLVMPSLRQLHPGVTVVRLGRVEREVAQRAARGTRDEC
>NZ_CP009150.1|WP_004203374.1|3130918_3131398_+|nuclear-transport-factor-2-family-protein
MSDSTEIRPPVPPFTRETAIQKVRAAEDGWNTRDPERVSLAYTPQSKWRNRAEFATGRAEIVALLRRKWTREIDYRLIKELWAFTGNRIAVRFAYEWRDDAGNWFRSYGNENWEFDENGLMAHRHACINDMPIREADRLFHWPLGRRPDDHPGLSDLGL
>NZ_CP009150.1|WP_004196513.1|3130200_3130818_+|TetR/AcrR-family-transcriptional-regulator
MDTKPDLAPAAGARERLLDAAETLIYAGGIHATGVDAIVKRSGAARKSFYAHFESKEALVAAALERRDARWMAWFVEATKKRGKTPRARLVGMFDVLREWFEQADFHGCAFLNAAGEIERADDPIRVVVREHKARLLAFVREQLDAHAAQAGADRRFVARLARQWLVLIDGAIGVALVSGDASAARDARAAAELLLDATLPNRSS
>NZ_CP009150.1|WP_038761908.1|3129457_3130111_-|YceI-family-protein
MKPVRWAGRFACAIALAGVAASCTPLRVVTHSVSTAEAAVPAGRYTLDPHHWSIVFDVDHFKYSRFTMRFDRANAQLDWRPGGGLADSGVSASIDAASVDTRVPLLDKLVAGADALDAARNPQIRFESTRFARTSATQGTLTGNLTIRGATHPVTLAVTFNGYGRNPLTKQDTLGFSASGTFSRAQFGVTSWYPAVGDDVRVRIEAEFVKEGEAPAQ
>NZ_CP009150.1|WP_004194543.1|3128056_3129088_+|L-threonine-3-dehydrogenase
MKALAKLERGPGLTLTRVKKPEVGHNDVLIKIRRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFSIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNREGAFAEYLAIPAFNAFKIPPEISDDLAAIFDPFGNATHTALSFNLVGEDVLITGAGPIGVMAVAIAKHVGARNVVITDINDYRLELARKMGATRAVNVSRESLRDVMADLHMTEGFDVGLEMSGVPSAFTSLLESMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSGLDLSPIITHRFAVDDYEKGFAAMLSGESGKVILDWADA
>NZ_CP009150.1|WP_004539575.1|3126844_3128044_+|glycine-C-acetyltransferase
MRDAYLAHLRGTLEQIRADGFYKTEREIASPQAADIRLAGGTHVLNFCANNYLGLADDSRLIAAAQAALEQDGFGMASVRFICGTQTVHKQLEAALSAFLKTDDCILYSSCFDANGGLFETLLDENDAIISDELNHASIIDGIRLSKARRFRYKNNDLADLEAKLREADAAGARFKLIATDGVFSMDGIIANLKGVCDLADRYGALVMVDDSHAVGFIGEHGRGTPEYCGVEGRVDIVTGTLGKALGGASGGYVAARREIVELLRQRSRPYLFSNTLTPSIAAASLKVLELLASDEGARLRERVRANGAHFREKMSAAGFALVPGEHPIIPVMLGDAQVASKMADALLAEGVYVIGFSFPVVPRGRARIRTQMSAAHTREQIDRAVDAFVRVGKTLGVI
>NZ_CP009150.1|WP_004532671.1|3126068_3126677_-|helix-turn-helix-transcriptional-regulator
MASSSGARRTTAPASPATGATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELFAQPKAPETIRVDGPHDIPTLAGHDAQYQLRVWGPIELAGKFEWYELTLPANGALVSNPHEPGTREHLTVLNGAVEIEAAGTARRLKAGDTARYAADGPHAIRNAGKSEAKALLIVIHR
>NZ_CP009150.1|WP_004529557.1|3125608_3125989_-|DUF2471-family-protein
MTEQDLAALSFKAAAHDMETIVRHIAERYIRQGVPLTWRLLHAVEAEALADLGFASRHDPMVRCLFDRPAELRFPETDDLVDFGQSNALPAVFSFAVAAYERAADARADTAAVPARSARASRAWGD
>NZ_CP009150.1|WP_004194457.1|3135651_3136329_+|isoprenylcysteine-carboxylmethyltransferase-family-protein
MNSLTKRALGAQVRFVAMLAVLIFASAGSLRYWQGWIYWFVFSGATTWLARHFLKHDPALVERRMRVGVRAERELSQKIILGVVSVASAGLIVAMGAEWRVLRMPFDWRPVALGNALVIAGFAICFAALRANRFASSIVEVKRDQPVISSGPYRFVRHPMYSGAMVIFFGSPIAAQSTWAWPFAAVLAVGVVARLVDEERYLSAHLDGYRAYCERVRWRLVPHVW
>NZ_CP009150.1|WP_004194444.1|3136533_3137157_+|glutathione-S-transferase-family-protein
MLKLLGKAPSINVRKVLWTCAELKLAYEREDWGAGFRSTQTPEFLALNPNGLVPVLVDGDFVLWESNAIIRYLANRYGGAHLYPVEPHARARVDQWLDWQTTALNRAWSYAFLALVRDAPDHGDTARIRASCESWARHMAILDAQLGTTGAFVTGADYTLADVALGLSINRWLRTPFDKPDFPAVSAYFDRLAARPGFAEHVDNGLP
>NZ_CP009150.1|WP_038758402.1|3137591_3138125_-|hypothetical-protein
MRPARAGRAFRFAVSRFAVSRFAMPIFVVPFALAALIWGAIHMFEAIAARFGDAVAIGAATVAAVAIAAAIARSVRRRRDIAPNAREDGWTHVLQRAWGDLRISATKGLLWLSQDGADGRYTLTDLSGCRAETLDGRWYLVVAVRDDRRAEWKLPMDDKRDALRWARVLTLAKRQRL
>NZ_CP009150.1|WP_004194462.1|3138135_3139374_-|patatin-like-phospholipase-family-protein
MKPRARTEKQAVDPADLHNEAGVPHALEHARTPFHDLPYETIALVLQGGGALGAYQAGVFEGLHEAGIPLNWIAGISIGALNTALIAGNPPERRVERLREFWNTICQPAFFPALPAMFEAALFNSHEYVRTFFTASQAASAVMQGQRGFFVPRFPPPLPGSTHPPEKVSYYDTSALRATLVKLCDFDRINSGETRVSVGAVNVGTGNFIYFDNTKTTLRPEHFMASGALPPAFPPVEIDGEFYWDGGIVSNTPLMEVLHASPRRDTLAFQVDLWSARGPLPESMNEVTERTKDVQYSSRTRFVTDTLQREQRFRNVLRRVLDQVPESIRESDPWCQQAETLSCSKRYNVQHLIYQQKAYEQHYKDYQFGASTMRDHWSAGLADIRKTLAVKNGLALPDNDAGFVTHDIHRMR
>NZ_CP009150.1|WP_004532424.1|3139370_3140156_-|3-hydroxybutyrate-dehydrogenase
MSNLNGKTAIVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVAELIEQAGGRAIGVAMDVTNEDAVNAGIDRVAQTFGSVDILVSNAGIQIVNPIENYAFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGQTVDGVFTTVEDVAKTVLFLSAFPSAALTGQSFVVSHGWFMQ
>NZ_CP009150.1|WP_004194452.1|3140202_3140943_-|acetoacetate-decarboxylase
MKPSQVRSKAFAMPLTSPAFPMGPYRFVNREFLIITYRTDMDRLREIVPEPLEVKEPLVHYEFIRMPDSTGFGDYTESGQVIPVEYKGQPGGYTLAMYLNDHPPIAGGRELWGFPKKLAQPTLQTHIDTLLGTLDYGPVRVATGTMGYKHQELDLEEQAKRLAGANFLLKIIPHVDGSARVCELVRYYLQDIEMKGAWTGPASLQLAPHALAPVADLPVLEIVEARHLLADLTLGLGEVVYDYLAQ
>NZ_CP009150.1|WP_004525615.1|3141400_3141997_+|undecaprenyl-diphosphatase
MQNFNLAVFSALNAGSTPPLGAVRFGVFAADWLVYAVPALLLLTWVMGAHPTRRQAIEAGVGACVALALAQVIGHFWYSPRPFVLGIGTQLIPHAPDGSFPSDHTTFVCSVAAGLLIARATRTAGAALAVIAAVIGWGRVYVGVHWPLDIVGGALVGTAGALAAHLYGRPVTALLDRVGESVHAVAFTRLHERPIRID
>NZ_CP009150.1|WP_004196519.1|3142019_3142256_-|hypothetical-protein
MTRHHTHAGIPRTLKIVGYCGLAAIALALFVAMCAILKDSALDREAARQLQNGNVELHGGADVEPGSTNDAAQARTPG
>NZ_CP009150.1|WP_004194445.1|3143021_3143849_-|siderophore-interacting-protein
MTQPTTERAVVRVRHTLKFRLLQVKRVVDVTPHLKRVTLAGDELDDFESASFDDHVKVFFPPPGEDAPARPEFGPNGIVFPQDRPRPVARDFTPRRYDRAARELDLDFVLHHPGPASQWAAQARVGQTLGIGGPRGSFVIPKDFDWHLLIGDDTALPAVARRLEELPAGTRVAAVLEVADPSAQIAFETDANLYVVWRHRGDAASGERGASRLVDALRELPLPAGEGYVWAAGEAAAMRGVREHLCRERGVAKSRIRASAYWKHGAIAVHESLED
>NZ_CP009150.1|WP_038760625.1|3143888_3144605_-|helix-turn-helix-transcriptional-regulator
MRHAHRFSRRECGMSDSFGHSPFEMFRQMFGGHRRGGGRHGFGPFGGFGGFGGGGPGGFGGFGDDAMPRGRQFSADDLQLLLLALLAKQPSHGYELIKALDTRSSGFYAPSPGMVYPALTYLEELGYVTVQAEGNRKRYALADAGRAHLDAQRERVEMLFAKLAHLGRKMEFMRRAFAGEAPAAPEDDTRGWLPEFVEARMALKQALFRRSGANADEQRRIAAILRRAVADIEGRAQG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP009151.1	1405436-1405466	0	1.0
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP009151.1	1405443-1405473	0	1.0
NZ_CP009150_3	3.2\|3135432\|17\|NZ_CP009150\|CRISPRCasFinder	3135432-3135448	17	NZ_CP009150.1	3135460-3135476	0	1.0
NZ_CP009150_3	3.2\|3135432\|17\|NZ_CP009150\|CRISPRCasFinder	3135432-3135448	17	NZ_CP009150.1	3135467-3135483	0	1.0
NZ_CP009150_3	3.2\|3135432\|17\|NZ_CP009150\|CRISPRCasFinder	3135432-3135448	17	NZ_CP009150.1	3135474-3135490	0	1.0
NZ_CP009150_3	3.2\|3135432\|17\|NZ_CP009150\|CRISPRCasFinder	3135432-3135448	17	NZ_CP009150.1	3135481-3135497	0	1.0
NZ_CP009150_3	3.2\|3135432\|17\|NZ_CP009150\|CRISPRCasFinder	3135432-3135448	17	NZ_CP009151.1	278447-278463	1	0.941

1. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to position: 1405436-1405466, mismatch: 0, identity: 1.0

ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
ccgcagcccgcagcccgcagcccgcagcccg	Protospacer
*******************************

2. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to position: 1405443-1405473, mismatch: 0, identity: 1.0

ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
ccgcagcccgcagcccgcagcccgcagcccg	Protospacer
*******************************

3. spacer 3.2|3135432|17|NZ_CP009150|CRISPRCasFinder matches to position: 3135460-3135476, mismatch: 0, identity: 1.0

gcacaacgcacaacgca	CRISPR spacer
gcacaacgcacaacgca	Protospacer
*****************

4. spacer 3.2|3135432|17|NZ_CP009150|CRISPRCasFinder matches to position: 3135467-3135483, mismatch: 0, identity: 1.0

gcacaacgcacaacgca	CRISPR spacer
gcacaacgcacaacgca	Protospacer
*****************

5. spacer 3.2|3135432|17|NZ_CP009150|CRISPRCasFinder matches to position: 3135474-3135490, mismatch: 0, identity: 1.0

gcacaacgcacaacgca	CRISPR spacer
gcacaacgcacaacgca	Protospacer
*****************

6. spacer 3.2|3135432|17|NZ_CP009150|CRISPRCasFinder matches to position: 3135481-3135497, mismatch: 0, identity: 1.0

gcacaacgcacaacgca	CRISPR spacer
gcacaacgcacaacgca	Protospacer
*****************

7. spacer 3.2|3135432|17|NZ_CP009150|CRISPRCasFinder matches to position: 278447-278463, mismatch: 1, identity: 0.941

gcacaacgcacaacgca	CRISPR spacer
gcacgacgcacaacgca	Protospacer
****.************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	457291-457321	0	1.0
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	457298-457328	0	1.0
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	457305-457335	0	1.0
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	457312-457342	0	1.0
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	457319-457349	0	1.0
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	457326-457356	0	1.0
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	457333-457363	0	1.0
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	457340-457370	0	1.0
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP022747	Sphingobium hydrophobicum strain C1 plasmid p1, complete sequence	94873-94903	6	0.806
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP022749	Sphingobium hydrophobicum strain C1 plasmid p3, complete sequence	6438-6468	6	0.806
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP022566	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence	168938-168968	6	0.806
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	457284-457314	7	0.774
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	457347-457377	7	0.774
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP022566	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence	168945-168975	7	0.774
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP015322	Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence	654657-654687	7	0.774
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP015322	Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence	499659-499689	7	0.774
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP052760	Pseudomonas aeruginosa strain LYT4 plasmid unnamed1, complete sequence	44992-45022	8	0.742
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP052760	Pseudomonas aeruginosa strain LYT4 plasmid unnamed1, complete sequence	44985-45015	8	0.742
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NC_028974	Streptomyces phage YDN12, complete genome	5498-5528	9	0.71
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP015322	Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence	654650-654680	10	0.677
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP015322	Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence	499666-499696	10	0.677
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	886785-886815	10	0.677
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP047687	Serratia marcescens strain 2838 plasmid pXQ, complete sequence	257-287	12	0.613
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP047684	Serratia marcescens strain 3024 plasmid pXQ, complete sequence	2821-2851	12	0.613
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP047681	Serratia marcescens strain 4201 plasmid pXQ, complete sequence	556-586	12	0.613
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NC_017443	Erwinia sp. Ejp617 plasmid pJE03, complete sequence	933-963	12	0.613
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP047690	Serratia marcescens strain 1140- plasmid pXQ, complete sequence	1274-1304	12	0.613
NZ_CP009150_3	3.1\|3135376\|31\|NZ_CP009150\|CRISPRCasFinder	3135376-3135406	31	NZ_CP047693	Serratia marcescens strain C110 plasmid pXQ, complete sequence	1029-1059	12	0.613

1. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 0, identity: 1.0

ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
ccgcagcccgcagcccgcagcccgcagcccg	Protospacer
*******************************

2. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 0, identity: 1.0

ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
ccgcagcccgcagcccgcagcccgcagcccg	Protospacer
*******************************

3. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 0, identity: 1.0

ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
ccgcagcccgcagcccgcagcccgcagcccg	Protospacer
*******************************

4. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 0, identity: 1.0

ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
ccgcagcccgcagcccgcagcccgcagcccg	Protospacer
*******************************

5. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 0, identity: 1.0

ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
ccgcagcccgcagcccgcagcccgcagcccg	Protospacer
*******************************

6. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 0, identity: 1.0

ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
ccgcagcccgcagcccgcagcccgcagcccg	Protospacer
*******************************

7. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 0, identity: 1.0

ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
ccgcagcccgcagcccgcagcccgcagcccg	Protospacer
*******************************

8. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 0, identity: 1.0

ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
ccgcagcccgcagcccgcagcccgcagcccg	Protospacer
*******************************

9. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP022747 (Sphingobium hydrophobicum strain C1 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.806

ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
atccagcccgcagcccgcagcccgcagctaa	Protospacer
 . *************************. .

10. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP022749 (Sphingobium hydrophobicum strain C1 plasmid p3, complete sequence) position: , mismatch: 6, identity: 0.806

ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
atccagcccgcagcccgcagcccgcagctaa	Protospacer
 . *************************. .

11. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP022566 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence) position: , mismatch: 6, identity: 0.806

ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
ccgcagcctgcagcccgctgcccgccacctc	Protospacer
********.********* ****** .**.

12. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 7, identity: 0.774

ccgcagcccgcagcccgcagcccgcagcccg-------	CRISPR spacer
-------ccgcagcccgcagcccgcagcccgggtgccc	Protospacer
       ************************

13. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 7, identity: 0.774

-------ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
ggatgtgccgcagcccgcagcccgcagcccg-------	Protospacer
       ************************

14. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP022566 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence) position: , mismatch: 7, identity: 0.774

ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
agatggcccgcagcctgcagcccgctgcccg	Protospacer
  ...**********.********* *****

15. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 7, identity: 0.774

ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
tcgcagatcgcagcccgcagcccggacgcgg	Protospacer
.***** .**************** *  * *

16. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 7, identity: 0.774

ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
tcgcagatcgcagcccgcagcccggacgcgg	Protospacer
.***** .**************** *  * *

17. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP052760 (Pseudomonas aeruginosa strain LYT4 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

-------ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
caaagtgccgcagcccgcagcccgcagccag-------	Protospacer
       ********************** *

18. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP052760 (Pseudomonas aeruginosa strain LYT4 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

ccgcagcccgcagcccgcagcccgcagcccg-------	CRISPR spacer
-------ccgcagcccgcagcccgcagccaggccgagc	Protospacer
       ********************** *

19. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NC_028974 (Streptomyces phage YDN12, complete genome) position: , mismatch: 9, identity: 0.71

ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
tgttcgccagcagcccgccgcccgcagccgc	Protospacer
.  . *** ********* **********

20. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 10, identity: 0.677

-------ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
gacggtgtcgcagatcgcagcccgcagcccg-------	Protospacer
       .***** .****************

21. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 10, identity: 0.677

-------ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
gacggtgtcgcagatcgcagcccgcagcccg-------	Protospacer
       .***** .****************

22. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.677

-------ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
agcaggccggcagcccgcagcccgcagctgg-------	Protospacer
       * *******************. *

23. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP047687 (Serratia marcescens strain 2838 plasmid pXQ, complete sequence) position: , mismatch: 12, identity: 0.613

-------ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
ggcgcgcccgcaggccgcagcccggagcgaa-------	Protospacer
       ****** ********** ***  .

24. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP047684 (Serratia marcescens strain 3024 plasmid pXQ, complete sequence) position: , mismatch: 12, identity: 0.613

-------ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
ggcgcgcccgcaggccgcagcccggagcgaa-------	Protospacer
       ****** ********** ***  .

25. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP047681 (Serratia marcescens strain 4201 plasmid pXQ, complete sequence) position: , mismatch: 12, identity: 0.613

-------ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
ggcgcgcccgcaggccgcagcccggagcgaa-------	Protospacer
       ****** ********** ***  .

26. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NC_017443 (Erwinia sp. Ejp617 plasmid pJE03, complete sequence) position: , mismatch: 12, identity: 0.613

ccgcagcccgcagcccgcagcccgcagcccg-------	CRISPR spacer
-------gttcagcccgctgcccgctgcccgcatgtac	Protospacer
        . ******** ****** *****

27. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP047690 (Serratia marcescens strain 1140- plasmid pXQ, complete sequence) position: , mismatch: 12, identity: 0.613

-------ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
ggcgcgcccgcaggccgcagcccggagcgaa-------	Protospacer
       ****** ********** ***  .

28. spacer 3.1|3135376|31|NZ_CP009150|CRISPRCasFinder matches to NZ_CP047693 (Serratia marcescens strain C110 plasmid pXQ, complete sequence) position: , mismatch: 12, identity: 0.613

-------ccgcagcccgcagcccgcagcccgcagcccg	CRISPR spacer
ggcgcgcccgcaggccgcagcccggagcgaa-------	Protospacer
       ****** ********** ***  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

401279 : 411901

Burkholderia_virus(45.45%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004552315.1\|401279_401855_+	recombinase family protein	A0A219Y9V9	Aeromonas_phage	1.0e-23	39.6
WP_009893924.1\|401925_403041_-	DUF3396 domain-containing protein	E5E3X7	Burkholderia_phage	8.6e-176	80.4
WP_004552313.1\|403050_403785_-	VRR-NUC domain-containing protein	A4JWV4	Burkholderia_virus	5.1e-52	50.5
WP_004552312.1\|403781_404309_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	2.8e-60	66.7
WP_009893919.1\|405055_405235_+	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	1.2e-18	74.6
WP_004552310.1\|405279_405696_+	type II toxin-antitoxin system HicB family antitoxin	A0A0A8JBA5	Ralstonia_phage	7.2e-27	60.0
WP_004552308.1\|406124_406622_-	hypothetical protein	NA	NA	NA	NA
WP_004537646.1\|408536_408686_-	bacteriophage protein Gp44	Q8W6Q6	Burkholderia_virus	3.3e-19	100.0
WP_004542548.1\|408941_409523_+	hypothetical protein	A9YX38	Burkholderia_phage	2.2e-21	100.0
WP_161788725.1\|409753_410053_-	hypothetical protein	Q6JIH9	Burkholderia_virus	2.3e-35	100.0
WP_038759295.1\|410019_410241_-	hypothetical protein	NA	NA	NA	NA
WP_038759296.1\|410517_410793_-	hypothetical protein	Q6JIH4	Burkholderia_virus	1.4e-42	97.8
WP_004549731.1\|411363_411633_+	BrnT family toxin	NA	NA	NA	NA
WP_004525420.1\|411616_411901_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.4e-10	50.0

DBSCAN-SWA_2

2700260 : 2778440

Stx2-converting_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038734449.1\|2700260_2700989_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	3.9e-20	30.1
WP_004552566.1\|2701172_2701826_-	glutathione S-transferase	NA	NA	NA	NA
WP_173426800.1\|2701851_2703108_-	amidohydrolase family protein	NA	NA	NA	NA
WP_038734449.1\|2703504_2704233_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	3.9e-20	30.1
WP_038760737.1\|2704242_2704500_-	hypothetical protein	NA	NA	NA	NA
WP_023358425.1\|2704512_2704650_-	hypothetical protein	NA	NA	NA	NA
WP_162483149.1\|2706003_2707761_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_123874559.1\|2707757_2708276_-	hypothetical protein	NA	NA	NA	NA
WP_009941131.1\|2708284_2708614_-	hypothetical protein	NA	NA	NA	NA
WP_076849157.1\|2718079_2718277_-	hypothetical protein	NA	NA	NA	NA
WP_038750765.1\|2718277_2718541_-	putative Immunity protein 75	NA	NA	NA	NA
WP_038760739.1\|2719133_2723792_-	type IV secretion protein Rhs	A0A2H4JFP5	uncultured_Caudovirales_phage	8.3e-23	34.9
WP_038760742.1\|2723778_2725047_-	hypothetical protein	NA	NA	NA	NA
WP_038760745.1\|2725062_2727267_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	9.3e-41	27.3
WP_038760747.1\|2729284_2729884_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_004524853.1\|2729908_2730319_-	RidA family protein	NA	NA	NA	NA
WP_009978541.1\|2730433_2731543_-	asparaginase	NA	NA	NA	NA
WP_004544583.1\|2731724_2732357_+	PAS domain-containing protein	NA	NA	NA	NA
WP_004524850.1\|2733253_2733691_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_004552570.1\|2734931_2736005_-	porin	NA	NA	NA	NA
WP_004540527.1\|2736422_2737847_-	aldehyde dehydrogenase (NADP(+))	NA	NA	NA	NA
WP_017880942.1\|2738062_2739247_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_004524845.1\|2739257_2740145_-	aldose 1-epimerase	NA	NA	NA	NA
WP_038760749.1\|2740147_2740918_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_028358332.1\|2740932_2741796_-	sugar ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.9e-13	25.4
WP_038760751.1\|2741792_2742761_-	ABC transporter permease	NA	NA	NA	NA
WP_004524841.1\|2742781_2743780_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_038760753.1\|2743817_2745020_-	mandelate racemase/muconate lactonizing enzyme family protein	Q6A202	Oenococcus_phage	9.0e-46	31.9
WP_038725609.1\|2745030_2745744_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_038760755.1\|2745875_2746766_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_004548470.1\|2747207_2747804_-	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	6.0e-27	38.1
WP_038760756.1\|2747844_2749407_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.6e-148	53.5
WP_004543818.1\|2749436_2749784_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.6e-40	72.9
WP_038719336.1\|2749780_2750188_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	1.2e-10	35.7
WP_038760758.1\|2750620_2752654_-	hypothetical protein	NA	NA	NA	NA
WP_038726332.1\|2752894_2755066_-	alpha-galactosidase	NA	NA	NA	NA
WP_004524829.1\|2755070_2755922_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_004524828.1\|2755922_2756846_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_004524827.1\|2756908_2758150_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_038760761.1\|2758185_2759430_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.1e-22	32.8
WP_004557920.1\|2759472_2760111_-	hypothetical protein	NA	NA	NA	NA
WP_143284288.1\|2760945_2761533_-	hypothetical protein	NA	NA	NA	NA
WP_038725598.1\|2761882_2763037_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_004524822.1\|2764376_2765117_+	hypothetical protein	NA	NA	NA	NA
WP_024429920.1\|2765545_2765701_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	1.8e-07	75.7
WP_144405275.1\|2765666_2766173_+	recombinase family protein	A0JC18	Ralstonia_phage	2.2e-17	51.7
WP_044584003.1\|2766247_2766448_-	DUF746 domain-containing protein	NA	NA	NA	NA
WP_076842026.1\|2768459_2769026_-	suppressor of fused domain protein	NA	NA	NA	NA
WP_173426801.1\|2769027_2769510_-	hypothetical protein	NA	NA	NA	NA
WP_102619315.1\|2772163_2773344_-\|transposase	IS3-like element ISBps1 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.2e-60	42.9
WP_076847189.1\|2773970_2775122_+	hypothetical protein	NA	NA	NA	NA
WP_071811398.1\|2775132_2775420_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_044584002.1\|2776427_2778440_-\|transposase	transposase	S5WIU1	Leptospira_phage	8.0e-31	50.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009151

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009151_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009151_1

708474-708553

Orphan

Consensus_repeat	Method
ACGGAATGGGCCCCGGCATGATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009151_1

>merge|NZ_CP009151|1|708474-708553|CRISPRCasFinder
ACGGAATGGGCCCCGGCATGATGGGCGGCGGCTACGGGCGCGGAATGATGGGCGGCTACGGAATGGGGCCCGGCATGATG

>NZ_CP009151|1|1|708474-708553|CRISPRCasFinder
ACGGAATGGGCCCCGGCATGATG	GGCGGCGGCTACGGGCGCGGAATGATGGGCGGCT
ACGGAATGGGGCCCGGCATGATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009151.1\|WP_038761570.1\|707269_708238_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP009151.1\|WP_004524604.1\|717333_717681_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009151.1\|WP_004524603.1\|718166_718727_-\|spermidine-N1-acetyltransferase	unknown	unknown	gnl\|CDD\|237916
NZ_CP009151.1\|WP_004524602.1\|718888_719059_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009151.1\|WP_004525837.1\|709474_710023_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009151.1\|WP_009969932.1\|701954_702980_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270382
NZ_CP009151.1\|WP_038761569.1\|706032_707127_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP009151.1\|WP_004189258.1\|704005_704881_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_CP009151.1\|WP_009972646.1\|698586_699021_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP009151.1\|WP_009972644.1\|700225_701080_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NZ_CP009151.1\|WP_004197759.1\|716564_717119_-\|YaeQ-family-protein	unknown	unknown	gnl\|CDD\|377782
NZ_CP009151.1\|WP_004545670.1\|711752_713366_-\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|235001
NZ_CP009151.1\|WP_004543103.1\|710285_711734_+\|RNA-polymerase-sigma-factor-RpoD/SigA	unknown	unknown	gnl\|CDD\|274108
NZ_CP009151.1\|WP_044584018.1\|697096_698188_-\|phage-portal-protein	unknown	unknown	gnl\|CDD\|222860
NZ_CP009151.1\|WP_038761568.1\|701076_701958_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NZ_CP009151.1\|WP_009969935.1\|699027_700041_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP009151.1\|WP_004197761.1\|715958_716375_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319916
NZ_CP009151.1\|WP_038729283.1\|713524_714466_-\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|223200
NZ_CP009151.1\|WP_004523110.1\|704891_706004_-\|histone-deacetylase	unknown	unknown	gnl\|CDD\|212521
NZ_CP009151.1\|WP_038738697.1\|714462_715557_-\|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada	unknown	unknown	gnl\|CDD\|185333

Protein	Function_ID	Function_description	E-value
NZ_CP009151.1\|WP_038761570.1\|707269_708238_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.19509e-70
NZ_CP009151.1\|WP_004524603.1\|718166_718727_-\|spermidine-N1-acetyltransferase	gnl\|CDD\|237916	PRK15130, PRK15130, spermidine N1-acetyltransferase; Provisional.	7.47948e-86
NZ_CP009151.1\|WP_009969932.1\|701954_702980_+\|extracellular-solute-binding-protein	gnl\|CDD\|270382	cd13664, PBP2_PotD_PotF_like_3, TThe periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain that functions as the primary high-affinity receptors of ABC-type polyamine transport systems. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.09944e-170
NZ_CP009151.1\|WP_038761569.1\|706032_707127_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.05328e-149
NZ_CP009151.1\|WP_004189258.1\|704005_704881_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP009151.1\|WP_009972646.1\|698586_699021_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.3469e-12
NZ_CP009151.1\|WP_009972644.1\|700225_701080_+\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	8.28809e-81
NZ_CP009151.1\|WP_004197759.1\|716564_717119_-\|YaeQ-family-protein	gnl\|CDD\|377782	pfam07152, YaeQ, YaeQ protein. This family consists of several hypothetical bacterial proteins of around 180 residues in length which are often known as YaeQ. YaeQ is homologous to RfaH, a specialized transcription elongation protein. YaeQ is known to compensate for loss of RfaH function.	3.23549e-104
NZ_CP009151.1\|WP_004545670.1\|711752_713366_-\|glutamate--cysteine-ligase	gnl\|CDD\|235001	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional.	0
NZ_CP009151.1\|WP_004543103.1\|710285_711734_+\|RNA-polymerase-sigma-factor-RpoD/SigA	gnl\|CDD\|274108	TIGR02393, RNA_polymerase_sigma_factor_RpoD, RNA polymerase sigma factor RpoD, C-terminal domain. This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc. [Transcription, Transcription factors].	2.71742e-88
NZ_CP009151.1\|WP_044584018.1\|697096_698188_-\|phage-portal-protein	gnl\|CDD\|222860	PHA02536, Q, portal vertex protein; Provisional.	0
NZ_CP009151.1\|WP_038761568.1\|701076_701958_+\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	1.42736e-82
NZ_CP009151.1\|WP_009969935.1\|699027_700041_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.06814e-39
NZ_CP009151.1\|WP_004197761.1\|715958_716375_+\|VOC-family-protein	gnl\|CDD\|319916	cd07253, GLOD5, Human glyoxalase domain-containing protein 5 and similar proteins. Uncharacterized subfamily of VOC family contains human glyoxalase domain-containing protein 5 and similar proteins. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.46868e-30
NZ_CP009151.1\|WP_038729283.1\|713524_714466_-\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	1.15813e-53
NZ_CP009151.1\|WP_004523110.1\|704891_706004_-\|histone-deacetylase	gnl\|CDD\|212521	cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII. This subfamily includes bacterial as well as eukaryotic Class II histone deacetylase (HDAC) and related proteins. Deacetylases of class II are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) and possibly other proteins to yield deacetylated histones/other proteins. Included in this family is a bacterial HDAC-like amidohydrolase (Bordetella/Alcaligenes species FB18817, denoted as FB188 HDAH) shown to be most similar in sequence and function to class II HDAC6 domain 3 or b (HDAC6b). FB188 HDAH is able to remove the acetyl moiety from acetylated histones, and can be inhibited by common HDAC inhibitors such as SAHA (suberoylanilide hydroxamic acid) as well as class II-specific but not class I specific inhibitors.	1.0559e-172
NZ_CP009151.1\|WP_038738697.1\|714462_715557_-\|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada	gnl\|CDD\|185333	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada.	2.00159e-121

>NZ_CP009151.1|WP_038761570.1|707269_708238_+|LysR-family-transcriptional-regulator
MRRIDLLSALETFVCAVEEGSLSQAARRLAKTPSAVTKAIAGLEATLGVQLLERTTRRLALTESGRLYLATATDVLRRLADGARQLSERDDEPRGLLRVTAAHSFGHAILAPLCAPFAQAFPRVRIELSLSDHYVDIVGEGFDLALRMGNYDLPSQIVKPIGSNRGLLCASPGYLARLGRPTAPADLAQHDCVIYRHPTLANTWTFERGGVRARLEPKGPLVTDDYGLALAAALDGAGVLPCPQWSVVDALEAGRLVPLLVDWRFESASFGEDRICAAYPSSRRGSTKIRRLVERVQARLADSEARVARVLGDALCADLARR
>NZ_CP009151.1|WP_038761569.1|706032_707127_-|polyamine-ABC-transporter-substrate-binding-protein
MKRIAWLAAVLASLACAAARAAGGNVLNIYNWAEYFAPDTIAGFEKETGIKVRLDVYDSNEALQTKLTTGNSGYDLVFPSNDFLARQIQAGLYRKLDKSRLPNLTNLDPAIVARAAEVDPGNQYSVPYMQGTFGLGLNVAKVKQALGGPLPANTLELIFNPAYAAKLERCGIAFNDAGSEVFPLALRYIGRDPNTTDPRDYEAALDMMKKIRPTIRQFIATPVMNDLATGGVCVVTGYSGAVLVAARRAAEAKNGQQIVYSLPSAGAPFWFDSMAIPKGAAHADHALRFIDYILRPDVVAKISNKVMYPNPNRVATPLVDRRLTANPAIYPDAATMRTLWVKRPMPPQAMRMQTRYWTRFKTGY
>NZ_CP009151.1|WP_004523110.1|704891_706004_-|histone-deacetylase
MIPTGLLFDPAFLSHRQGDLVYVVPHGTLNLGEHFDSPLRLAYTKQLLDAVGMTERLTRVAFARATDEQLLRVHRPEYLRQLAEACAVAGEQVVRLGDDAAGSASTEDVARLAAGAACAAVDAVMTGPLRQAYALIRPSGHHAGADFAMGYCYYNNVAIAARHAQAAHGVERVAIVDWDVHHGNGTQQAFYDDPSVLFVSLHEAANFPVDGGEARETGGGAGAGYNANVPLPSGTGDAGYRHAFDELVLPLVEAFAPQLILVSAGQDANAFDPLGRMRVQRDGFRHMARALRQAAGGACGGRIVMLQEGGYSLPYLPIATLGVLEGLVGWNAPFDDPHQFVQYPLGEGERAAVKAARAALAPYWPTLHRS
>NZ_CP009151.1|WP_004189258.1|704005_704881_-|N-carbamoylputrescine-amidase
MRKTTVAVTQMACDWNVDANLSRAERLVRDAAARGAQIVLLQELFETPYFCIDQHPAHLALAQPYEGHPWLMRFASLARELGVVLPVSFFERAGQTQFNSVAIFDADGRALGIYRKTHIPDGPGYTEKYYFTPGDTGFRVWDTAYGRIGVGICWDQWFPECARAMALAGAELLLYPSAIGSEPHDASIDSRAHWRNAQRGHAAANLMPVAASNRVGVERGASGEIVFYGSSFIAGADGEMIVECDRHGEAIATAEFDLDALAYRRRGWGVFRDRRPECYRALSEGAADRVR
>NZ_CP009151.1|WP_009969932.1|701954_702980_+|extracellular-solute-binding-protein
MKAWLTLLLTMTFGFVQAAELHLANWPDWMPPELLKKFEKETGIKTTLDIYDSDATLLSKLQAGGGGYDVVVAGDYYVQVFAKNGLVRKLDKSRLRNMANIMPEYRHPLFDPNRDYTVPYLIFMTGFAYDGARVPGGKLDDSWKSLFDPPAALRGEIADLDSVEELYMAASWYLKQDECTENPEDAKRVLAVLRKQKPYVKTYSNEGTIDRMISRQVVVQHGWSGATVRVQRKLPSAAFALPREGVRMAQDNFLIPAKAKNVNEAHTFLNWMMKPENMAAASNAYLYPNEISGAERYMSADLLKNPAVMLPAAYKERLRPFKLCSPAALALRDKVWTLFKQ
>NZ_CP009151.1|WP_038761568.1|701076_701958_+|ABC-transporter-permease
MNSAQPARHRFPFAVYAALGAFAFLYAPMVALVALSFNQGDSSLVWAGWGLHGYVDAWQDPTLMRAARNSLALAGTSAAIATALATLAAVVMWAREGRGKTVIESLIGVPLIVPEIVMAIATLLLFSALSIDLSFYTVLLAHVAFCLPFTYLPIRARLRRIDPLLLDAAADLSATPWAAFRQITLPLALPGIAAGAMLAFLTSMDDFVITYFVAGPGVTTLPMYIFGALKFGLTPKINAISTIMLALSAIVAIVGSASVRSDATDDARDESPAGDAAARAHPLFSHTNEIEVL
>NZ_CP009151.1|WP_009972644.1|700225_701080_+|ABC-transporter-permease
MLSPVVALLMVGTLLPIAVVASVSLMRPLAYGGVDWGRFSFDAYLNLIVDRDFDGNLIFQSDHVRIFARSLALAAATTAGCVALGVPTALFIATQPPRRKNALLILVTIPFWTSLVIRSYAWIILIADHGFANRALNGLGVLAGPLGLLYTTPATLIGLLYTFFPFMVLPVYASLDDFDWRIVEAAYDLGATQWRALRDVVIPNCMPGIAAGIGLVFVPALGSYVIPNLLGGSHSMMIGNLIEMKFTQGRNWPLGASLSLALLGLVLAMMLARRLTSAKREVLA
>NZ_CP009151.1|WP_009969935.1|699027_700041_+|AraC-family-transcriptional-regulator
MASSDKPRSLAARRPASLHAVAVAVDMLQRRGLSTELILSGSGIAPAELRQPNKIISHAQEMVIYHNAWRMTGDSAIGLAMADAVPLTAYMPLGLAMMVSPTLGAAIELANSCPLLALCYFTTRLETKGSRAVITFSDYSYRPDLYVLNTDMCLAGLRRQMFDLLGGPPTFRQVTLAFDAPKHAYAYESLFQCPIRFSAPAHSFTLDANCMNTPLPMAHQLEHMIAKDACVRREQELEQWVAADVVGKALHYLYDHPFTGTVPALAGALGMSTRTLQRKLKQSGTSLQRLLEQVRRDLLIQDLALGSRSRKDIARHIGYKDPTSVSRARRRWAKEDS
>NZ_CP009151.1|WP_009972646.1|698586_699021_+|GNAT-family-N-acetyltransferase
MEFRPIKESDLGSTYDIRFSVTENRILPHQIHLLDRDRVLEQLRSGFGVLAIEGDAAVGYCTATGGRHAFINALFVRPAWHGAGVGREMLERALAWLREQGSESVSLVTDPGSRADGFYQHLGWIRGELDSYGCQVTFRKSLST
>NZ_CP009151.1|WP_044584018.1|697096_698188_-|phage-portal-protein
MSSWRRRASTTAPSACSNVTSSAATTLRNRPRQIRAPARAEVFTFDEPMPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSALFFKANVLASTFRPHRWLSRHAFERWALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFSGFVYVNGWQERHEFEPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFAELNDWLGEEVVTFDDYEIPPAPVAA
>NZ_CP009151.1|WP_004525837.1|709474_710023_+|hypothetical-protein
MEEAYARRALLLHLGSVLQILSRLEGAPDNQSIEALLAANGMLADVPLVEYVVQDMTVREFSARALRAFCLWPQLLLEDPLDCAALALPVRKHLFAGNDAGWKAYAATLREVSPGFDTARSYAAEPHEAEFDLADERDAETGDGPVERDDEADDDGRLRERAAASVESATPAGAPVRRESYE
>NZ_CP009151.1|WP_004543103.1|710285_711734_+|RNA-polymerase-sigma-factor-RpoD/SigA
MKVSARELRYEQGIDRLLELAGARDDTEYADVADEFASAPSSAFAHDLGEPDSLDHQASDESAGAGSFGDKPTRPAHGDTDVDTDWRDDDAPPSGSNDAAPVDTAASTDPLALFVRRMHAVPLLTHAQEIALAAEIEAGREQVLQALAEALDRLDLASLPADPALGRARAALQRARARGDEGARAFARARTAAYAALAAHGWPSAEVDAVRRAMRRLPTSPEKSDAGAQRAFADGEARISAATARMAEANLRLVLSIARKYASRGLDLADLLQEGNLGLLRAIEKFEHRRGFKFSTYATWWIRQAISRAIADRARTIRVPVHVGDEARRVRKAADRIERRSGVSASLAELSEATGLPAERLRAVLTLPREPRSLNAPLGDDDQAEFGDIVEDTSTPSLFDALAHGQMCDVVTSLLKTMSAQEADILRRRFGIGGDEPWSYEQIAARAGVSREQVRRIEKRALQTLRVTAEACNAHDFLDVQP
>NZ_CP009151.1|WP_004545670.1|711752_713366_-|glutamate--cysteine-ligase
MPNNMTSRQTDLLQQRLAVLSTSPTREQLPDGLRGIEKESLRVTRDGMIAFTPHPRALGSALTHPSLTTDYSEALVELITPAERDAATTLERLDELHRYVYASLGDEMLWTDSMPGLLPADDEIPIADYGTSNIGRLKTVYRRGLAYRYGRTMQCIAGIHYNYSLSEEVWRRLHAEEGSTAGIVDYQSERYLALIRNFRRTSWLLMYLFGASPALDAGFLRGRAHKLDTFDAATLYRPHATSLRMSDLGYSNTTAQAALQADYNTLSGYLDALSKAVSEPYPPYEAIGTHRDGEWIQINTNVLQIENEFYSTIRPKRVTYSGERPLHALASRGVQYIEVRCLDIDPFEPTGIALDTARFLDAYLLVCALDESAPLTCDAYRESNANFGRVTMEGRKPGLELTRDGAAVPMRAWADEIFAQIEAAGRVLDDIRGDDAHARAIAAQRAKLDDPELTSSARVLRAMRENGQSFLEFARAQSAAHAAYFHGRPLDEAATRDARALAERSLAEQAELEGKNAGSFDAFVAAYRAYTLNRFSV
>NZ_CP009151.1|WP_038729283.1|713524_714466_-|DNA-3-methyladenine-glycosylase-2-family-protein
MSAAVEPAAVRPDSVVLELPFKSPYDWPRVLRFFAGRAIPGVEAVGDGAYRRTVDHHGAIGTLTVRKHPRKRCLVALVEGDAARHADAAFAARLSTMFDLQADPAAIGAHLARDAWFAPLVGAAPGLRVPGAWSGFELIVRAIVGQQVSVKAATTIVGRLVERAGERLALHAPGAIGWRFPEPAALAACDVSRIGMPGKRAAALQGVARAVASGDVPLDAYASDPAGVRAALLALPGIGPWTVEYVAMRAWRDADAWPATDLVLMQAIVARDPALDRPASQRLRADAWRPWRAYAAMHLWNEIADRAGSARGG
>NZ_CP009151.1|WP_038738697.1|714462_715557_-|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada
MKQPPYPTDDARWAALVARDVDADGAFCYAVKTTGVFCRPSCASRLPRRENVSFFADTGAARAAGYRPCKRCRPEGLPRELDIVNRACAVLDAHRQDRFTLAQLSDAIHVSPFHLQRLFKRVVGVSPRQYQAAQRGAALRDALQSGAAVTRAAVDAGFNSPSRLYESVPRELGMSPSAFRRKGAGLKIDYATADTRLGVVLVAATSKGICKIAFGDAAAPLVDELRTGFANAQIAESPERIAPFIAQVDAYLNGTRRRFELPLDLAATEFQQRVWDALRRIPYGETRSYTQIAEALGAPRAVRAVASACASNPVALAIPCHRVVQKGGSLAGYRWGLPRKAALLDAEAQRAAGESVESAVDHAA
>NZ_CP009151.1|WP_004197761.1|715958_716375_+|VOC-family-protein
MKFHIHEIDHVVLRAADLAAMTRFYCDVLGCHVEKEQRELGLVQLRAGRSLIDLLAVGAPIDRAGSGAPGKGRNMDHLCLRVEPFDAAALRTHLAAHGARPGDEARRYGADGYGPSLYLFDPEGNMVELKGPPEAVAP
>NZ_CP009151.1|WP_004197759.1|716564_717119_-|YaeQ-family-protein
MALKSTIYKAELQIADMDRHYYADHSLTVARHPSETDERMMVRIAAFALFAHERLEFCKGLSDTDEPDLWQKDLTGAIEVWIDVGQPDERRIAKASGRAGRVNVIAYGGRTSDIWWQGARGKVERLRNVQVTTLADGVAAALGGLAERTMRLQCTIQDGAAWLSSATHDPVAIEWTTLKAREDA
>NZ_CP009151.1|WP_004524604.1|717333_717681_-|hypothetical-protein
MLKRTGLFLALTGGIVAFSVAQANGDVSLKPQQEIQLTKNAWGCLSKDNLDSVLNHERDGKAQAKQQYFDDYRCLSVPEGQRFRVVSVDKGDVQFVSAENSDQQGLWTDARFIKQ
>NZ_CP009151.1|WP_004524603.1|718166_718727_-|spermidine-N1-acetyltransferase
MQIQNEQHTLALRPLERQDLRFVHELNNDAKIMRYWFEEPYETFTELSQLYDQHVHDQRERRFVAFDSDGELVGLVELIELDYIHRRGEFQIIIAPNRQGRGFATRATRLAVEYAFKVLNLRKLYLIVDKSNVAAIRVYEKCGFKHEAELIEEFFGNGQYHNALRMCIFQRDYFAAQPGAELHARE
>NZ_CP009151.1|WP_004524602.1|718888_719059_+|hypothetical-protein
MIEQVILGVFLVLPLLIVAVLYSDELWQEHRLQHPRDEHTPHIDWRHPWRILRRGH

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Crispr_ID: NZ_CP009151_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009151_2

933668-933771

Orphan

Consensus_repeat	Method
ACCTCGCGAACTGGGCACGGGTACCTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009151_2

>merge|NZ_CP009151|2|933668-933771|CRISPRCasFinder
ACCTCGCGAACTGGGCACGGGTACCTCGTAAACTCGCTTGCTCAACCTCACGAAAAATTTTCGGCTGGCGCAGACGACCTCGCGAACTGGGTACGGGTACCTCG

>NZ_CP009151|2|2|933668-933771|CRISPRCasFinder
ACCTCGCGAACTGGGCACGGGTACCTCG	TAAACTCGCTTGCTCAACCTCACGAAAAATTTTCGGCTGGCGCAGACG
ACCTCGCGAACTGGGTACGGGTACCTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009151.1\|WP_004202928.1\|930095_930995_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|225784
NZ_CP009151.1\|WP_004524472.1\|927685_929773_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|130146
NZ_CP009151.1\|WP_024430280.1\|944157_944475_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP009151.1\|WP_004546085.1\|923715_924069_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009151.1\|WP_038761792.1\|925793_926528_-\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238874
NZ_CP009151.1\|WP_038761785.1\|941473_941980_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379171
NZ_CP009151.1\|WP_044584019.1\|931523_932810_+\|integrase-arm-type-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|170049
NZ_CP009151.1\|WP_038761720.1\|917881_920809_-\|aminomethyl-transferring-glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
NZ_CP009151.1\|WP_076804979.1\|942839_943019_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009151.1\|WP_004195879.1\|921358_921739_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NZ_CP009151.1\|WP_144402329.1\|932821_933283_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009151.1\|WP_038761783.1\|944474_945392_+\|DUF4935-domain-containing-protein	unknown	unknown	gnl\|CDD\|374474
NZ_CP009151.1\|WP_004202927.1\|921832_922951_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NZ_CP009151.1\|WP_038761784.1\|942313_942715_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP009151.1\|WP_080298454.1\|937748_938426_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009151.1\|WP_144402357.1\|934196_935630_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009151.1\|WP_144402330.1\|936322_937408_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009151.1\|WP_038761786.1\|938409_941481_-\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|380293
NZ_CP009151.1\|WP_004553012.1\|943190_943778_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NZ_CP009151.1\|WP_038761790.1\|926593_927388_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009151.1\|WP_044584019.1\|931523_932810_+\|integrase-arm-type-DNA-binding-domain-containing-protein	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	7.13659e-67
NZ_CP009151.1\|WP_004524472.1\|927685_929773_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|130146	TIGR01074, ATP-dependent_DNA_helicase_Rep, ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP009151.1\|WP_038761792.1\|925793_926528_-\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238874	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	2.65963e-67
NZ_CP009151.1\|WP_004553012.1\|943190_943778_+\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.07016e-46
NZ_CP009151.1\|WP_038761784.1\|942313_942715_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.000236326
NZ_CP009151.1\|WP_004202928.1\|930095_930995_-\|c-type-cytochrome	gnl\|CDD\|225784	COG3245, CycB, Cytochrome c5 [Energy production and conversion].	1.10773e-20
NZ_CP009151.1\|WP_038761786.1\|938409_941481_-\|N-6-DNA-methylase	gnl\|CDD\|380293	NF033451, BREX_2_MTaseX, BREX-2 system adenine-specific DNA-methyltransferase PglX. This protein, PglX, is a site-specific DNA methyltransferase associated with PGL (phage growth limitation), a type 2 BREX (bacteriophage exclusion) system. The phage resistance appears not be restriction, but does manage to inhibit phage replication.	5.70407e-15
NZ_CP009151.1\|WP_038761783.1\|944474_945392_+\|DUF4935-domain-containing-protein	gnl\|CDD\|374474	pfam16289, DUF4935, Domain of unknown function (DUF4935). This family consists of uncharacterized proteins around 350 residues in length and is mainly found in various species, such as Prevotella, Pseudomonas, Leptospira and so on. The function of this family is unknown.	2.0148e-18
NZ_CP009151.1\|WP_004202927.1\|921832_922951_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NZ_CP009151.1\|WP_004195879.1\|921358_921739_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	1.4325e-67
NZ_CP009151.1\|WP_024430280.1\|944157_944475_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	7.67238e-10
NZ_CP009151.1\|WP_038761785.1\|941473_941980_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|379171	pfam13411, MerR_1, MerR HTH family regulatory protein.	0.00293075
NZ_CP009151.1\|WP_038761720.1\|917881_920809_-\|aminomethyl-transferring-glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0

>NZ_CP009151.1|WP_144402329.1|932821_933283_-|hypothetical-protein
MPNAKSFTRTQRDTAAKNLAALPEKPENEHRLSTRDMVKSIQAHILAAQKKGYTFEEIADVISKAGVSVSVGTLKYAMRVVAEEKKHSQVSGGSTRTGNAQSSRKKSGLASPVRNGQSHVAPRLRESEKMNKPSITPIRGTFGFPINPDTENL
>NZ_CP009151.1|WP_044584019.1|931523_932810_+|integrase-arm-type-DNA-binding-domain-containing-protein
MGQLTDLKVKNAAHCEKEYFLPDGDGLYLRVRPTRKVWVYRYTRDGRSIKLSLGRYPIVSLAAARRKAREEMKRREDGIDPQKARREKWEQEQAARLNTFELVAREWHKASEKDRQWSAGYTEKIIRYLELHVFPWVGRLPVEEIKPTEVVRCLHRIKERGNLETAMRVRETIQHVYQYAVDTGVLEPAKNFVNGRTGGLPAVRSRHYPAITDPQQLGQLLRDIRAYNGHVITRAALQLAPLLFQRPGQLRFAHWEDIDLDDAVWVCPPEKMKMREWKKRDSRTPAHVVPLPSQAMEILRDLHPLTGPKGPIFRSVAKRSEATRYMSENTVNSALRTLGYDTKEQITGHGFRATARTLIREYLGWDREVIERHLAHASSEELGDSYDRATFLEQRREMVQDWADFLDELAAGNVPKPARTLRLVSRTA
>NZ_CP009151.1|WP_004202928.1|930095_930995_-|c-type-cytochrome
MSEAPHGAPIKTPGQLIAVVIASFVIPIAIIVLFATYANHAFRTGAGTDGLSDEAVAKRIAPLAQVDIKDANAPRVYKTGEEVYKAVCVTCHGTGAAGAPKFGDAAAWAPRIAAGYDEVLHLALTGKGAMPPRGGTNPDDYSDYEIARAVVYMANQGGAKFAEPAQPAANAAPASGAAAASAPGASDAAANSQAAAAMAAIAALPKAGEAPAAGANAESSASAGKALYESTCQACHATGVLNAPKFGNKADWAPRLKDSMDTVYNFALHGKGAMPPKGGSNASDADVKAAVDYMVNAAK
>NZ_CP009151.1|WP_004524472.1|927685_929773_+|UvrD-helicase-domain-containing-protein
MSAGLNSAQSEAVRYLDGPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERVGKLLEGKTLTTPGKEGRKVPVNQLTVCTFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQEQIGTTDKGLIRKIQTIISLWKNGLVAPEEAMTIAANEDEHQAALVYRNYVATLHAYQAVDFDDLIRLPTELFARNEPVRDRWQNRLRYLLIDEYQDTNACQYELLKLLAGPRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPKLHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEHGMGDSITVTPCNDEEHEAESVVFRLSAHKFERRTQFRDYAILYRGNFQARVFEQVLRRERIPYVLSGGQSFFDKAEIKDLCAYLRLIANADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGIEARLSARQVEPLRIFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAYDERQAQTKWQNVLEFLEWLKRKGTKPEAEQAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKEEDPDAVRLSTVHASKGLEYPHVFLVGVEEGIMPHSGGSDDGPIDDERIEEERRLMYVAITRAQRSLHLNWCKKRKRARETIVCEQSRFIAEMGLDEAPPPTPEEAPMTPKDRLASLKALLQK
>NZ_CP009151.1|WP_038761790.1|926593_927388_-|hypothetical-protein
MLALKLTLVPLFLLLVSIAGRRWGPSIAGWLAGLPVVACPILFLVAVERGPAFGAHAALLSLSAIAASEAFSFAYAWTCRRHRWPLALAAGLAAWAAAASALARLPATPPAATAVAFAATCFGQSCLPRGATLAPRAPLSHADLAGRLAAGAALALAVTSLAGALGPAWSGLFAVFPLLGSVLAVSSHRAHGPDFVVPLLRGMVFGRFSFAAFCLCVALTLPRQPALQAFAEAAALSVAVQGATKRLAARGPRPTALAQTATPD
>NZ_CP009151.1|WP_038761792.1|925793_926528_-|SGNH/GDSL-hydrolase-family-protein
MGYHFATAALGPLLLAQGRHVRRVTPRLAEADGPRGGADGAGPPLRLLVLGDSAAAGVGVASQSDALAGQLVRALAPFHRVEWRLLARTGATTRDLLDWLDAEPDARFDAVVTSLGVNDVTDGVPPARWLDAQAALVEQLTARFGAAHVVLTAVPPMHRFPALPQPLRWYLGLRAARLNAALSRWAAGRPACEFLRVDMPLTRDAMASDGFHPGTQACAAWAGQAAAAIRRRVAAATRLQAAVG
>NZ_CP009151.1|WP_004546085.1|923715_924069_-|hypothetical-protein
MQRLIRAAACCVLVSSLAACVVTPPRPAPAPRPSPQVVGYERMQQIQGRIDNLSHRIDARVNAGYYPPPQGAALHRRLDVIRQESTDMAAQHGGGLSGDEQRVLNQELDVAARAIGE
>NZ_CP009151.1|WP_004202927.1|921832_922951_-|glycine-cleavage-system-aminomethyltransferase-GcvT
MTVLKTTPLHAAHRALNARMVDFGGWDMPVNYGSQIEEHQAVRTDAGMFDVSHMCVVDFTGPRVRAFFEHAIANNVAKLQTPGKALYSCLLNPQGGVIDDLIVYYFTEEFFRVVVNAGTAEKDIAWFNQLNEQGGFGLTIAPRRDFAIVAAQGPNARAKVWDTVPCARAATSELKPFNAAQVAGTPFGDLTVARTGYTGEDGFEIIVPATHVEALWNALAERGVRPCGLGARDTLRLEAGMNLYGQDMDESVSPLDAGLAWTVDLSAPRAFVGRDALEAHGSRAAFVGLILQKENGRAGGVLRAHQKVATPHGEGEITSGTFSPSMQESIAFARVPKDVAIGDTVHVQIRDKQLPARVVKLPFVRNGKVLAA
>NZ_CP009151.1|WP_004195879.1|921358_921739_-|glycine-cleavage-system-protein-GcvH
MSNVPAELKYTDEHEWIRTEADGTLTIGITDHAQTTLGDIVFLELPKVGSQVKAGDAVGVVESVKAASDIYSPVTGEVIAINTDVADAPEEVNGDAYGAWLFKIKLAADASTDSLLDAAAYEKLVG
>NZ_CP009151.1|WP_038761720.1|917881_920809_-|aminomethyl-transferring-glycine-dehydrogenase
MKLEHPDRLMNRTPLSLAALETHDAFAERHIGPDAASQQAMLDTLGFATRAALIDAVIPASIRRAETLPLGPFAQPKSEAEALAALRALADKNQVFRSYIGQGYYDTHTPAVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQQMVADLTGLEISNASLLDEATAAAEAMTLLQRVGKPQSNVFYVADDVLPQTLEVIKTRAKPIGIEVKSGPAADAAAANAFGVLLQYPGANGDVRDYRALADAIHAAGGHVVVAADILALTVLMPPGEWGADVAVGNTQRFGVPMGFGGPHAAYMAVRDEFKRQMPGRLVGVTVDAQGKPALRLALQTREQHIRREKATSNVCTAQALLAIMASMYAVYHGPRGLKTIALRVNRIAALLAAGIRHLGYATVNDTFFDTLTIDTGARTAQLHAFAQAKRINLRRAGDTRVGVSVDETTTRADLADLLTIFAQAAGATAPDIDALDAGLLPAPALPPSLERTSAYLTHHVFNRHHSETEMLRYLRSLSDKDLALDRSMIPLGSCTMKLNATSEMLPVTWPEFGRIHPFAPAEQTVGYREMIDQLEQMLVAATGYAAVSLQPNAGSQGEYAGLLIIHAYHESRGESHRDVCLIPASAHGTNPASAHMAGMKVVVVACDAQGNVDIADLRAKADAHSNDLAAIMITYPSTHGVFEQNVREICEIVHAHGGQVYVDGANMNAMVGLTAPGQFGGDVSHLNLHKTFCIPHGGGGPGVGPVAVGPHLAKFLPNQRSTGYARGEDGIGAVSAAPYGSASILPISWMYIAMMGAKNLTATTETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKDSSGITVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAFPVASLVANKYWPPVGRADNAYGDRNLFCSCVPVSDYA
>NZ_CP009151.1|WP_144402357.1|934196_935630_+|hypothetical-protein
MPSVPGAIAAPADYKNDLQVFEGNLMTFIGQHGLPTQNVLVPVAERVKVFGNVEDVLNRLSAEHKGKSVYVSKFIAAAAAGLFDSALNYLWDETIFELRKRIVRYDLEYFFDIAVTNPDKRKKLSTEDDLAKLDDNELVRGAAEMGLISELGFKHLDFIRYMRNWASAAHPNQNQITGLQLIAWFETCVTEVITLPETNSTAQIRALLANIRAHQLDAMGAKQTSGFFPELTSEQCNSLMSGFFGIYTNDTTLPLARDNVKQLATYLWPFVTEATRKTFGVKYGQFTANNDAAKAKWAREFLDLVGGASYIPDSIRAAEIGTAIDELLAAHRGYNNFHIEPSFARRLESLVGDKGDVPPVVAGRYVDALVEVYLTNGNGIAWSAEPVYQRLLGKFDSSQALLAALSFRNRDIASKLQFPLSESKYREIVALAKTKVSSPQGLDILKTIEDYKAPLQHMRDETKLMEKVNAITQSLGA
>NZ_CP009151.1|WP_144402330.1|936322_937408_+|hypothetical-protein
MKYVVMGVRMQMVFSRLGDRLVYGLKVFDDPEKAATLWSIVERKEELAALAALSTGEPCQVFLFNEIAVCVGWRETTINIPLSKFQMLSSGVETEAVDYSSLSQQVSALLDRPSLDDVPGNTVVIDIDGSKDWRPSINHFITNNASASSLDLFDRDEGNQQEQIGIWLTDSLHPSGSHHSPQIPKGSQTRELTDILLSYDHGSMLIESKALSIFPRDVLPSRARLAKDISGHVKKAVSQLRGGIRKIKAGVPVMNFEGETIEVERTRPMHAIVLIPDLDLIEDQHQYDSAFMAEFMEATGGFLHLLDVAELLRVVQAAEMIAARGTTTTPMMAFDYYLIERAKTALQAGSLCFEMLLRFEG
>NZ_CP009151.1|WP_080298454.1|937748_938426_-|hypothetical-protein
MHLSPDLPVGRPSFDLSEDQLATVVDLLCRGVATARPLLQPGMLEVPITIHVKKAMRRLKKELGLSNLEITGEFELLDLSNDDPEVLGRIDIILRFLHQFGDEEAYLGIECKRVGHGESALNQRYVTQGVDRFVTGQYATGHHWGIMLGYVLKLPSAAMVNGIDARIRTTYGEAAKLNDLDSHADALSVHSGDLAQGADGHVIRLMHIFVDTTPAAGVMGAELSA
>NZ_CP009151.1|WP_038761786.1|938409_941481_-|N-6-DNA-methylase
MGSAAFTKALTATGYLLSDGGPAPGLARAGEDAGARLRAVLSDSRVGLQAEAVFSAQSVPTAIFKDAGDEAPSEQQIAQWHEAAWNVGVAPLLWIITPTDVRLYDCYASPAKESPQQIATEPLDVFSLQAEDRLRSLDAMCGRYATETGAFWSSAIGKRIDRRHRVDRQLLDEINALEDRLTGLPPANGRPLPGEEDEAQASRDFAQRLIGRCIFTSYLIDRGIAQPFLPQEFSADVADMFATVDSAFRLFQWLRSTFNGDLFPMDDPGAEHQRFSDAHLDLLRDFVEGRSLLTGQGRLFRFRFDAIPVDLISSIYQQFARSSAADDAHTQGLHYTPVELVHLTLDPVFEALPTSARVIDPTCGSGAFLVEAFRRLVWKRTQGKAASRSIVRDVLYKQLYGIDINRSALGIAAFSLYLAALELDEEPVQDIQDLKFHRLIGTTLFEADTVHDDLPSLVTERPFDAVVGNPPWTFVKKAAASRKRKAADIQSSRPRRSPDQEFLWVASRLAGDAGRIGMIMKASPFFSKDVHAIQSRQALLSTLHPVALVNLSALRKEGLFPDATGPALLFFGRCALMDQQDRLLLGSIPWTPNFRRNGVFHIGPGELRSVSLPRVLRTPPMLKAATFGTARDGWLIEKLERTFPTLEKILDDAGLNIRGQGFQVNGGDDNEPPGHYDQLRVLTPDNYTPFRIDGRALPHFEHESLHRARNPAIFKGPLLICPEGSFLNTTGRYSSTVSSTDLLYTESFFGVSFAEHELDAALILSAILSSSLTTFQLAYGGGAWGLERTKVKPNDLLALRIPDLTAAEPSLLQAVRDAERRLARAPEDPESLEALDRSVYDLYDLERDEALLASDSVMRARMLLFEGHAQRLAFTRRPSTAELIAYAGEVVHTVNAYLRARGKRHLEAVIYPHRIAVGNAIDGTPGVDAVRFAMVAGAPPNVPCVHQGSDVEIDRLTPLLRGQVSSAVPPYLNERRQLRIYDESALFILKPSELRYWTRTAGLNDGDAILADHWIKGFHASVT
>NZ_CP009151.1|WP_038761785.1|941473_941980_-|MerR-family-transcriptional-regulator
MQLVPTRDATRLTGLSTEQLREWTSRRALIPPDVKPKGHGSPARYSWQTILLLRLAVVLRDRFKMELHAHRDLFAELGAGLARTSFLSLWGKSLALYGGTQWGLIDPRDEGVTIDDCIVLRLDPHLQQLSDSFALPKPAAPGQFQLFPALGVMVEAAANNSTGRRRHG
>NZ_CP009151.1|WP_038761784.1|942313_942715_-|helix-turn-helix-transcriptional-regulator
MNISSLIELAKDAAGSYGELAERIGRPASRISDWKAGRRKPDAADIMLLAEVAGRPVFETLAEIEMELDTERSSVWQRALGNLRAAGVAATVVLGATAVVSLTSKPADAAEKAQENKDLAPAGIERIGERLVR
>NZ_CP009151.1|WP_076804979.1|942839_943019_-|hypothetical-protein
MRLTWAALTIEARLLIAIALVTVFVAFRSDRRRVQLRRQKELDPIKRAIYNPKQFRRPR
>NZ_CP009151.1|WP_004553012.1|943190_943778_+|site-specific-integrase
MQSLGLDGGESRVRWISRSEATALILAAGAVARQPHLRNFVRLALSTGCRKNELLALEWHRVDFERSHFRLECEHTKNGKRRLVPLNSGALLALRDQRDWVARHCAGSEWVFASSSGRRVGNLQKGFVAACARAGIENFRIHDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLPL
>NZ_CP009151.1|WP_024430280.1|944157_944475_+|helix-turn-helix-transcriptional-regulator
MKRASAEGFNLIQHTVDDTEHLLAKPGVRAAYDALEDEYMALRAILAIRHEAGLTQAQVAERMGTTASAVSRLEASLSSEKHSPSFATLRKYAAACGKRLVISFA
>NZ_CP009151.1|WP_038761783.1|944474_945392_+|DUF4935-domain-containing-protein
MVPKAREDSCKKWETKMAGGIQKLLFIDTNIWLDFYRARNEAYLGLLPPLETLSNRIIVTHHLESEYKRNRQSVILESVSELKNKMPDKVPSIGVLATTREFGMLKRDIDNARKRIKNLQGKLISILERPAEKDQIYQVVHRIFHRDHPLVLTREERHNNARKDIRDRAYRRFMHGCPPRKRNDTSYGDAINWEWMIDCAIQANAELVIVSRDGDYGSTYDSKSYINDHLRQEFSNRVSQKRELLLYTRVSDALKHFHVAVTHAQEKAEADLVEQMALGDKFLSQSQPMQDIASIGDNAMENGLE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

453830 : 502435

Burkholderia_virus(30.0%)

holin,transposase,integrase

attL 483416:483433|attR 487894:487911

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158333048.1\|453830_454454_+\|transposase	transposase	NA	NA	NA	NA
WP_038723871.1\|455252_455594_+	hypothetical protein	NA	NA	NA	NA
WP_038723678.1\|455712_455937_+	hypothetical protein	NA	NA	NA	NA
WP_004543938.1\|456132_456291_+	hypothetical protein	NA	NA	NA	NA
WP_004543934.1\|456593_457142_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	9.3e-75	78.7
WP_038748018.1\|457138_457900_+	nuclease	A4JWV4	Burkholderia_virus	2.1e-56	53.7
WP_004543876.1\|457905_459015_+	DUF3396 domain-containing protein	A4JWV3	Burkholderia_virus	1.2e-124	58.0
WP_076905408.1\|460660_461815_+	ATP-binding protein	NA	NA	NA	NA
WP_143299369.1\|461814_462402_+	hypothetical protein	NA	NA	NA	NA
WP_076905409.1\|462878_463703_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.5e-57	45.2
WP_038802333.1\|463750_464870_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.6e-49	39.5
WP_080298570.1\|466627_468337_+	TIGR04141 family sporadically distributed protein	NA	NA	NA	NA
WP_038761637.1\|468361_471151_+	SEC-C domain-containing protein	NA	NA	NA	NA
WP_038761638.1\|471447_472563_-	5-methylcytosine-specific restriction endonuclease system specificity protein McrC	NA	NA	NA	NA
WP_100086167.1\|472565_474401_-	AAA family ATPase	K4I1H4	Acidithiobacillus_phage	5.8e-28	33.8
WP_038739071.1\|474471_475188_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_038745127.1\|475196_478283_-	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	4.6e-54	27.6
WP_144402323.1\|478292_479546_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_038761640.1\|479536_481939_-	N-6 DNA methylase	A0A2H4PQP4	Staphylococcus_phage	9.4e-71	37.2
WP_144402324.1\|482010_482262_+	hypothetical protein	NA	NA	NA	NA
WP_038761641.1\|482916_483111_-	hypothetical protein	NA	NA	NA	NA
WP_038753789.1\|483311_484130_-	hypothetical protein	NA	NA	NA	NA
483416:483433	attL	NA	NA	NA	NA
WP_038761642.1\|484126_485410_-\|integrase	integrase family protein	NA	NA	NA	NA
WP_173426803.1\|485690_486587_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_038761645.1\|487465_490309_+	DUF1929 domain-containing protein	NA	NA	NA	NA
487894:487911	attR	NA	NA	NA	NA
WP_004522984.1\|490321_490930_+	SCO family protein	NA	NA	NA	NA
WP_038761646.1\|491293_492127_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_004522986.1\|492123_492426_-	AzlD family protein	NA	NA	NA	NA
WP_004522987.1\|492422_493151_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_004522988.1\|493275_493734_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_009972750.1\|493971_494268_+	lipoprotein	NA	NA	NA	NA
WP_038761647.1\|494314_496432_+\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA
WP_004537794.1\|496572_496983_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_004522993.1\|497011_497641_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_009962777.1\|497790_498228_+	VOC family protein	NA	NA	NA	NA
WP_028358864.1\|498232_499174_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA
WP_004522997.1\|499259_500195_+	hydroxymethylglutaryl-CoA lyase	A0A1V0SKU2	Klosneuvirus	4.1e-38	32.4
WP_004522998.1\|500250_500757_+	YbaK/EbsC family protein	NA	NA	NA	NA
WP_004535937.1\|500753_501086_+	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_004525642.1\|501214_502435_+\|transposase	ISL3-like element ISBma1 family transposase	A9YX10	Burkholderia_phage	2.7e-239	99.8

DBSCAN-SWA_2

938409 : 949926

Burkholderia_virus(22.22%)

integrase

attL 940987:941002|attR 959364:959379

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038761786.1\|938409_941481_-	N-6 DNA methylase	Q8V6N5	Halorubrum_phage	1.8e-05	27.0
940987:941002	attL	NA	NA	NA	NA
WP_038761785.1\|941473_941980_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_038761784.1\|942313_942715_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_076804979.1\|942839_943019_-	hypothetical protein	NA	NA	NA	NA
WP_004553012.1\|943190_943778_+\|integrase	site-specific integrase	A0A0S2SYQ7	Pseudomonas_phage	9.1e-44	50.0
WP_024430280.1\|944157_944475_+	helix-turn-helix transcriptional regulator	A0A088CD40	Shigella_phage	3.7e-15	57.0
WP_038761783.1\|944474_945392_+	DUF4935 domain-containing protein	A4PE40	Ralstonia_virus	1.2e-45	40.2
WP_045141125.1\|945645_946188_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	1.4e-46	55.2
WP_009974475.1\|946445_946898_+	VRR-NUC domain-containing protein	Q8W6S1	Burkholderia_virus	3.1e-31	58.8
WP_004525722.1\|946897_947977_+	DUF3396 domain-containing protein	A9YX32	Burkholderia_phage	2.2e-160	99.0
WP_004525721.1\|948133_948382_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	4.0e-41	97.6
WP_024428549.1\|949281_949926_+	lytic polysaccharide monooxygenase	A0A0K1Y848	Apis_mellifera_filamentous_virus	3.4e-07	30.5
959364:959379	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1135583 : 1191647

Burkholderia_virus(23.08%)

plate,portal,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004196743.1\|1135583_1136297_+\|transposase	transposase	NA	NA	NA	NA
WP_038760791.1\|1136587_1141291_+	glutamate synthase subunit alpha	NA	NA	NA	NA
WP_004527896.1\|1141384_1142851_+	glutamate synthase subunit beta	NA	NA	NA	NA
WP_038760789.1\|1143131_1144643_+	alanine:cation symporter family protein	NA	NA	NA	NA
WP_009974327.1\|1144639_1145200_+	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA
WP_080298459.1\|1145237_1145426_-	hypothetical protein	NA	NA	NA	NA
WP_017881315.1\|1145415_1147182_-	ABC transporter ATP-binding protein/permease	NA	NA	NA	NA
WP_004521927.1\|1147784_1148918_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_038760787.1\|1148966_1149164_+	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_004199935.1\|1149216_1150032_+	thiazole synthase	NA	NA	NA	NA
WP_080298460.1\|1150028_1151132_+	thiamine phosphate synthase	NA	NA	NA	NA
WP_004199931.1\|1151231_1152050_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.4e-20	29.4
WP_004199929.1\|1152046_1152814_+	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA
WP_004199927.1\|1152826_1153387_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_004521932.1\|1153434_1154394_+	VacJ family lipoprotein	NA	NA	NA	NA
WP_004521933.1\|1154508_1155141_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004199923.1\|1155137_1155407_+	STAS domain-containing protein	NA	NA	NA	NA
WP_004521934.1\|1155702_1156629_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.0e-21	29.7
WP_004199919.1\|1156625_1157381_+	ABC transporter permease	NA	NA	NA	NA
WP_009932072.1\|1157466_1157706_+	BolA family transcriptional regulator	NA	NA	NA	NA
WP_004527889.1\|1157719_1159069_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_004199915.1\|1159065_1159722_+	ATP phosphoribosyltransferase	NA	NA	NA	NA
WP_004185201.1\|1159763_1161101_+	histidinol dehydrogenase	NA	NA	NA	NA
WP_004199913.1\|1161255_1162326_+	histidinol-phosphate transaminase	A0A1X7BZP2	Faustovirus	2.1e-14	26.6
WP_004199911.1\|1162389_1162977_+	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_004199909.1\|1163032_1163653_+	YchE family NAAT transporter	NA	NA	NA	NA
WP_004199907.1\|1163649_1164291_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_004199906.1\|1164458_1165214_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_004550994.1\|1165296_1166070_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_004201279.1\|1166069_1166483_+	phosphoribosyl-AMP cyclohydrolase	NA	NA	NA	NA
WP_004202813.1\|1166479_1166848_+	phosphoribosyl-ATP diphosphatase	NA	NA	NA	NA
WP_004202812.1\|1166900_1167290_+	hypothetical protein	NA	NA	NA	NA
WP_004185206.1\|1167318_1167684_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_004199902.1\|1167772_1168006_+	Sec-independent protein translocase subunit TatA	NA	NA	NA	NA
WP_004531855.1\|1168032_1168560_+	Sec-independent protein translocase subunit TatB	NA	NA	NA	NA
WP_004199900.1\|1168598_1169381_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	8.7e-26	29.7
WP_004521939.1\|1169725_1170934_-	Do family serine endopeptidase	A0A1B1IRD3	uncultured_Mediterranean_phage	8.5e-12	31.9
WP_004202811.1\|1170955_1171702_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_004204996.1\|1171922_1172543_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA
WP_004199894.1\|1172543_1173926_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA
WP_004521940.1\|1173948_1174707_+	cytochrome c1	NA	NA	NA	NA
WP_004185176.1\|1174799_1175411_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA
WP_004527881.1\|1175480_1176002_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.9e-21	51.0
WP_038724553.1\|1176715_1177771_+\|portal	phage portal protein	A4JWQ2	Burkholderia_virus	2.0e-206	99.7
WP_004202809.1\|1177814_1178171_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	3.9e-42	100.0
WP_004199884.1\|1178173_1178470_-	type II toxin-antitoxin system RelE/ParE family toxin	A4JWV2	Burkholderia_virus	2.8e-49	98.0
WP_004552667.1\|1179137_1180394_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	3.6e-21	26.2
WP_031313497.1\|1180396_1181014_+	DUF4276 family protein	NA	NA	NA	NA
WP_038759954.1\|1181786_1182113_+\|plate	baseplate assembly protein	K4NZR5	Burkholderia_phage	1.0e-49	95.3
WP_076926800.1\|1182601_1183018_+	DNA methylase	K4NZW3	Burkholderia_phage	4.6e-58	84.7
WP_111952238.1\|1183410_1184001_+	hypothetical protein	NA	NA	NA	NA
WP_009922432.1\|1184104_1184470_-	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	1.1e-52	89.3
WP_004521948.1\|1184571_1185357_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004521949.1\|1185353_1186700_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004521950.1\|1186808_1187423_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004531875.1\|1187797_1188469_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_004521952.1\|1188505_1189024_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004521953.1\|1189040_1190531_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004527837.1\|1190603_1191107_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004204912.1\|1191164_1191647_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_4

1892799 : 1901635

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004522358.1\|1892799_1894200_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.9e-79	38.5
WP_009921652.1\|1894231_1895155_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.3e-15	27.1
WP_004190173.1\|1895213_1896206_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	9.1e-28	30.9
WP_004189725.1\|1896277_1896595_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_004532363.1\|1896921_1897824_+	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	1.9e-53	39.9
WP_044596199.1\|1898050_1899352_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_004188957.1\|1899530_1900454_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	8.4e-44	36.5
WP_038759721.1\|1900792_1901635_-	alpha/beta hydrolase	Q6TUZ7	Yaba_monkey_tumor_virus	4.4e-15	29.5

DBSCAN-SWA_5

2413783 : 2421966

Burkholderia_virus(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004196630.1\|2413783_2414047_+	hypothetical protein	Q8W6S4	Burkholderia_virus	2.2e-26	85.5
WP_011205127.1\|2414231_2414954_-	immunity 52 family protein	A4PE26	Ralstonia_virus	1.4e-30	39.9
WP_080297085.1\|2414960_2415563_-	hypothetical protein	NA	NA	NA	NA
WP_004552779.1\|2415904_2416411_-	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	8.7e-19	39.4
WP_038754499.1\|2416407_2416833_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	3.8e-15	49.4
WP_038754502.1\|2417113_2417509_-	hypothetical protein	NA	NA	NA	NA
WP_076838840.1\|2417759_2417987_+	hypothetical protein	Q8W6S4	Burkholderia_virus	1.1e-21	74.2
WP_004527234.1\|2418022_2418256_-	immunity 52 family protein	A4PE26	Ralstonia_virus	4.3e-13	60.6
WP_004550288.1\|2418331_2418793_-	avidin	NA	NA	NA	NA
WP_004193710.1\|2419729_2419912_+	hypothetical protein	NA	NA	NA	NA
WP_009980362.1\|2420038_2420662_-	phospholipase D family protein	NA	NA	NA	NA
WP_004554310.1\|2420856_2421966_-	class II histone deacetylase	A0A2K9L2T7	Tupanvirus	1.2e-36	31.3

DBSCAN-SWA_6

3181125 : 3247314

Klosneuvirus(14.29%)

coat,plate,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004204967.1\|3181125_3183750_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	5.5e-80	39.2
WP_173426810.1\|3184068_3184272_+	hypothetical protein	NA	NA	NA	NA
WP_004531186.1\|3184373_3185594_+	CoA transferase	NA	NA	NA	NA
WP_011205452.1\|3185767_3187231_-\|transposase	IS1182-like element ISBma2 family transposase	A0A1X9I5T2	Streptococcus_phage	6.8e-80	38.6
WP_004196731.1\|3187517_3187757_-	hypothetical protein	NA	NA	NA	NA
WP_004193654.1\|3188006_3189716_+\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	8.8e-188	57.5
WP_038760429.1\|3190059_3190542_-	NUDIX hydrolase	A0A2I6PFL2	Proteus_phage	1.7e-19	41.3
WP_038760426.1\|3190560_3190947_-	hypothetical protein	NA	NA	NA	NA
WP_038734565.1\|3191234_3193334_-	glycoside hydrolase family 3 protein	NA	NA	NA	NA
WP_004545120.1\|3193435_3194296_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_038760424.1\|3194339_3195782_-	cytochrome-c peroxidase	NA	NA	NA	NA
WP_004193177.1\|3196015_3197599_+	acid phosphatase	NA	NA	NA	NA
WP_004521731.1\|3197796_3198990_+	trans-2-enoyl-CoA reductase family protein	NA	NA	NA	NA
WP_004526790.1\|3199612_3200800_+	HlyD family secretion protein	NA	NA	NA	NA
WP_004521735.1\|3200981_3202601_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_038760423.1\|3202602_3204303_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_004192810.1\|3204606_3205239_-	response regulator transcription factor	NA	NA	NA	NA
WP_038760420.1\|3205239_3207321_-	response regulator	A0A1V0SGR3	Hokovirus	1.7e-12	26.8
WP_004196717.1\|3207731_3208697_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_038760417.1\|3208712_3211124_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_024430383.1\|3211168_3212008_-	molecular chaperone	NA	NA	NA	NA
WP_004526783.1\|3212025_3212550_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_004526782.1\|3212626_3213187_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_004526781.1\|3213239_3213785_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_004531175.1\|3214042_3214264_-	hypothetical protein	NA	NA	NA	NA
WP_004196705.1\|3214601_3215495_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004552604.1\|3215938_3217198_+	MFS transporter	NA	NA	NA	NA
WP_038760415.1\|3217242_3218226_+	amidohydrolase family protein	NA	NA	NA	NA
WP_004193855.1\|3218693_3218975_+	H-NS histone family protein	NA	NA	NA	NA
WP_009927991.1\|3219237_3219510_-	hypothetical protein	NA	NA	NA	NA
WP_004521752.1\|3220402_3221716_-	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_038760436.1\|3221975_3222896_-	hypothetical protein	NA	NA	NA	NA
WP_038760413.1\|3223013_3225857_-	hypothetical protein	NA	NA	NA	NA
WP_004526759.1\|3225853_3226729_-	hypothetical protein	NA	NA	NA	NA
WP_038760411.1\|3226730_3229571_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.4e-20	25.9
WP_004521762.1\|3229583_3229889_-	hypothetical protein	NA	NA	NA	NA
WP_038760434.1\|3229906_3230149_-	hypothetical protein	NA	NA	NA	NA
WP_038746324.1\|3230380_3230920_-	hypothetical protein	NA	NA	NA	NA
WP_024431418.1\|3231705_3235041_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_038760408.1\|3235149_3237564_-	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_038760406.1\|3237560_3238154_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_076841699.1\|3238276_3238876_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_038724322.1\|3238872_3239430_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_012730392.1\|3239566_3240400_-	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_038760404.1\|3240402_3243210_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	5.7e-27	25.0
WP_076830677.1\|3243243_3243471_+	hypothetical protein	NA	NA	NA	NA
WP_004193592.1\|3243730_3243997_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_038731652.1\|3244020_3245436_+	hypothetical protein	NA	NA	NA	NA
WP_004542513.1\|3245463_3247314_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_7

3856688 : 3867645

Agrobacterium_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004196461.1\|3856688_3858989_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	42.1
WP_004194131.1\|3858985_3859300_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	4.4e-13	44.6
WP_004196460.1\|3859832_3860036_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_011851202.1\|3860165_3861776_-	multicopper oxidase family protein	NA	NA	NA	NA
WP_009929279.1\|3861788_3861971_+	hypothetical protein	NA	NA	NA	NA
WP_004189552.1\|3861943_3863203_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	5.2e-12	63.0
WP_004189780.1\|3863469_3864048_+	pseudouridine synthase	NA	NA	NA	NA
WP_071810810.1\|3864310_3864529_+	hypothetical protein	NA	NA	NA	NA
WP_004185496.1\|3864720_3865230_+	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	5.5e-13	41.2
WP_004197486.1\|3865530_3867645_+	elongation factor G	E4ZFJ7	Streptococcus_phage	5.8e-56	26.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009150

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009151

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection