CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009165	Burkholderia pseudomallei A79A chromosome 1, complete sequence	3 crisprs	cas3,DEDDh,csa3,DinG	0	2	8	0
NZ_CP009164	Burkholderia pseudomallei A79A chromosome 2, complete sequence	5 crisprs	DinG,csa3,cas3,RT	0	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009165_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009165_1

652065-652144

Orphan

Consensus_repeat	Method
ACGGAATGGGCCCCGGCATGATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009165_1

>merge|NZ_CP009165|1|652065-652144|CRISPRCasFinder
ACGGAATGGGCCCCGGCATGATGGGCGGCGGCTACGGGCGCGGAATGATGGGCGGCTACGGAATGGGGCCCGGCATGATG

>NZ_CP009165|1|1|652065-652144|CRISPRCasFinder
ACGGAATGGGCCCCGGCATGATG	GGCGGCGGCTACGGGCGCGGAATGATGGGCGGCT
ACGGAATGGGGCCCGGCATGATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009165.1\|WP_009969932.1\|645545_646571_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270382
NZ_CP009165.1\|WP_004524602.1\|662479_662650_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009165.1\|WP_038761570.1\|650860_651829_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP009165.1\|WP_004543103.1\|653876_655325_+\|RNA-polymerase-sigma-factor-RpoD/SigA	unknown	unknown	gnl\|CDD\|274108
NZ_CP009165.1\|WP_009972644.1\|643816_644671_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NZ_CP009165.1\|WP_004524603.1\|661757_662318_-\|spermidine-N1-acetyltransferase	unknown	unknown	gnl\|CDD\|237916
NZ_CP009165.1\|WP_004524604.1\|660924_661272_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009165.1\|WP_004525837.1\|653065_653614_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009165.1\|WP_004197759.1\|660155_660710_-\|YaeQ-family-protein	unknown	unknown	gnl\|CDD\|377782
NZ_CP009165.1\|WP_038761569.1\|649623_650718_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP009165.1\|WP_004545670.1\|655343_656957_-\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|235001
NZ_CP009165.1\|WP_009972646.1\|642177_642612_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP009165.1\|WP_004189258.1\|647596_648472_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_CP009165.1\|WP_044584018.1\|640687_641779_-\|phage-portal-protein	unknown	unknown	gnl\|CDD\|222860
NZ_CP009165.1\|WP_009969935.1\|642618_643632_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP009165.1\|WP_038729283.1\|657115_658057_-\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|223200
NZ_CP009165.1\|WP_004523110.1\|648482_649595_-\|histone-deacetylase	unknown	unknown	gnl\|CDD\|212521
NZ_CP009165.1\|WP_038761568.1\|644667_645549_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NZ_CP009165.1\|WP_038738697.1\|658053_659148_-\|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada	unknown	unknown	gnl\|CDD\|185333
NZ_CP009165.1\|WP_004197761.1\|659549_659966_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319916

Protein	Function_ID	Function_description	E-value
NZ_CP009165.1\|WP_009969932.1\|645545_646571_+\|extracellular-solute-binding-protein	gnl\|CDD\|270382	cd13664, PBP2_PotD_PotF_like_3, TThe periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain that functions as the primary high-affinity receptors of ABC-type polyamine transport systems. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.09944e-170
NZ_CP009165.1\|WP_038761570.1\|650860_651829_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.19509e-70
NZ_CP009165.1\|WP_009972644.1\|643816_644671_+\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	8.28809e-81
NZ_CP009165.1\|WP_004543103.1\|653876_655325_+\|RNA-polymerase-sigma-factor-RpoD/SigA	gnl\|CDD\|274108	TIGR02393, RNA_polymerase_sigma_factor_RpoD, RNA polymerase sigma factor RpoD, C-terminal domain. This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc. [Transcription, Transcription factors].	2.71742e-88
NZ_CP009165.1\|WP_004524603.1\|661757_662318_-\|spermidine-N1-acetyltransferase	gnl\|CDD\|237916	PRK15130, PRK15130, spermidine N1-acetyltransferase; Provisional.	7.47948e-86
NZ_CP009165.1\|WP_004197759.1\|660155_660710_-\|YaeQ-family-protein	gnl\|CDD\|377782	pfam07152, YaeQ, YaeQ protein. This family consists of several hypothetical bacterial proteins of around 180 residues in length which are often known as YaeQ. YaeQ is homologous to RfaH, a specialized transcription elongation protein. YaeQ is known to compensate for loss of RfaH function.	3.23549e-104
NZ_CP009165.1\|WP_038761569.1\|649623_650718_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.05328e-149
NZ_CP009165.1\|WP_004545670.1\|655343_656957_-\|glutamate--cysteine-ligase	gnl\|CDD\|235001	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional.	0
NZ_CP009165.1\|WP_009972646.1\|642177_642612_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.3469e-12
NZ_CP009165.1\|WP_004189258.1\|647596_648472_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP009165.1\|WP_044584018.1\|640687_641779_-\|phage-portal-protein	gnl\|CDD\|222860	PHA02536, Q, portal vertex protein; Provisional.	0
NZ_CP009165.1\|WP_009969935.1\|642618_643632_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.06814e-39
NZ_CP009165.1\|WP_038729283.1\|657115_658057_-\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	1.15813e-53
NZ_CP009165.1\|WP_004523110.1\|648482_649595_-\|histone-deacetylase	gnl\|CDD\|212521	cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII. This subfamily includes bacterial as well as eukaryotic Class II histone deacetylase (HDAC) and related proteins. Deacetylases of class II are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) and possibly other proteins to yield deacetylated histones/other proteins. Included in this family is a bacterial HDAC-like amidohydrolase (Bordetella/Alcaligenes species FB18817, denoted as FB188 HDAH) shown to be most similar in sequence and function to class II HDAC6 domain 3 or b (HDAC6b). FB188 HDAH is able to remove the acetyl moiety from acetylated histones, and can be inhibited by common HDAC inhibitors such as SAHA (suberoylanilide hydroxamic acid) as well as class II-specific but not class I specific inhibitors.	1.0559e-172
NZ_CP009165.1\|WP_038761568.1\|644667_645549_+\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	1.42736e-82
NZ_CP009165.1\|WP_038738697.1\|658053_659148_-\|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada	gnl\|CDD\|185333	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada.	2.00159e-121
NZ_CP009165.1\|WP_004197761.1\|659549_659966_+\|VOC-family-protein	gnl\|CDD\|319916	cd07253, GLOD5, Human glyoxalase domain-containing protein 5 and similar proteins. Uncharacterized subfamily of VOC family contains human glyoxalase domain-containing protein 5 and similar proteins. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.46868e-30

>NZ_CP009165.1|WP_038761570.1|650860_651829_+|LysR-family-transcriptional-regulator
MRRIDLLSALETFVCAVEEGSLSQAARRLAKTPSAVTKAIAGLEATLGVQLLERTTRRLALTESGRLYLATATDVLRRLADGARQLSERDDEPRGLLRVTAAHSFGHAILAPLCAPFAQAFPRVRIELSLSDHYVDIVGEGFDLALRMGNYDLPSQIVKPIGSNRGLLCASPGYLARLGRPTAPADLAQHDCVIYRHPTLANTWTFERGGVRARLEPKGPLVTDDYGLALAAALDGAGVLPCPQWSVVDALEAGRLVPLLVDWRFESASFGEDRICAAYPSSRRGSTKIRRLVERVQARLADSEARVARVLGDALCADLARR
>NZ_CP009165.1|WP_038761569.1|649623_650718_-|polyamine-ABC-transporter-substrate-binding-protein
MKRIAWLAAVLASLACAAARAAGGNVLNIYNWAEYFAPDTIAGFEKETGIKVRLDVYDSNEALQTKLTTGNSGYDLVFPSNDFLARQIQAGLYRKLDKSRLPNLTNLDPAIVARAAEVDPGNQYSVPYMQGTFGLGLNVAKVKQALGGPLPANTLELIFNPAYAAKLERCGIAFNDAGSEVFPLALRYIGRDPNTTDPRDYEAALDMMKKIRPTIRQFIATPVMNDLATGGVCVVTGYSGAVLVAARRAAEAKNGQQIVYSLPSAGAPFWFDSMAIPKGAAHADHALRFIDYILRPDVVAKISNKVMYPNPNRVATPLVDRRLTANPAIYPDAATMRTLWVKRPMPPQAMRMQTRYWTRFKTGY
>NZ_CP009165.1|WP_004523110.1|648482_649595_-|histone-deacetylase
MIPTGLLFDPAFLSHRQGDLVYVVPHGTLNLGEHFDSPLRLAYTKQLLDAVGMTERLTRVAFARATDEQLLRVHRPEYLRQLAEACAVAGEQVVRLGDDAAGSASTEDVARLAAGAACAAVDAVMTGPLRQAYALIRPSGHHAGADFAMGYCYYNNVAIAARHAQAAHGVERVAIVDWDVHHGNGTQQAFYDDPSVLFVSLHEAANFPVDGGEARETGGGAGAGYNANVPLPSGTGDAGYRHAFDELVLPLVEAFAPQLILVSAGQDANAFDPLGRMRVQRDGFRHMARALRQAAGGACGGRIVMLQEGGYSLPYLPIATLGVLEGLVGWNAPFDDPHQFVQYPLGEGERAAVKAARAALAPYWPTLHRS
>NZ_CP009165.1|WP_004189258.1|647596_648472_-|N-carbamoylputrescine-amidase
MRKTTVAVTQMACDWNVDANLSRAERLVRDAAARGAQIVLLQELFETPYFCIDQHPAHLALAQPYEGHPWLMRFASLARELGVVLPVSFFERAGQTQFNSVAIFDADGRALGIYRKTHIPDGPGYTEKYYFTPGDTGFRVWDTAYGRIGVGICWDQWFPECARAMALAGAELLLYPSAIGSEPHDASIDSRAHWRNAQRGHAAANLMPVAASNRVGVERGASGEIVFYGSSFIAGADGEMIVECDRHGEAIATAEFDLDALAYRRRGWGVFRDRRPECYRALSEGAADRVR
>NZ_CP009165.1|WP_009969932.1|645545_646571_+|extracellular-solute-binding-protein
MKAWLTLLLTMTFGFVQAAELHLANWPDWMPPELLKKFEKETGIKTTLDIYDSDATLLSKLQAGGGGYDVVVAGDYYVQVFAKNGLVRKLDKSRLRNMANIMPEYRHPLFDPNRDYTVPYLIFMTGFAYDGARVPGGKLDDSWKSLFDPPAALRGEIADLDSVEELYMAASWYLKQDECTENPEDAKRVLAVLRKQKPYVKTYSNEGTIDRMISRQVVVQHGWSGATVRVQRKLPSAAFALPREGVRMAQDNFLIPAKAKNVNEAHTFLNWMMKPENMAAASNAYLYPNEISGAERYMSADLLKNPAVMLPAAYKERLRPFKLCSPAALALRDKVWTLFKQ
>NZ_CP009165.1|WP_038761568.1|644667_645549_+|ABC-transporter-permease
MNSAQPARHRFPFAVYAALGAFAFLYAPMVALVALSFNQGDSSLVWAGWGLHGYVDAWQDPTLMRAARNSLALAGTSAAIATALATLAAVVMWAREGRGKTVIESLIGVPLIVPEIVMAIATLLLFSALSIDLSFYTVLLAHVAFCLPFTYLPIRARLRRIDPLLLDAAADLSATPWAAFRQITLPLALPGIAAGAMLAFLTSMDDFVITYFVAGPGVTTLPMYIFGALKFGLTPKINAISTIMLALSAIVAIVGSASVRSDATDDARDESPAGDAAARAHPLFSHTNEIEVL
>NZ_CP009165.1|WP_009972644.1|643816_644671_+|ABC-transporter-permease
MLSPVVALLMVGTLLPIAVVASVSLMRPLAYGGVDWGRFSFDAYLNLIVDRDFDGNLIFQSDHVRIFARSLALAAATTAGCVALGVPTALFIATQPPRRKNALLILVTIPFWTSLVIRSYAWIILIADHGFANRALNGLGVLAGPLGLLYTTPATLIGLLYTFFPFMVLPVYASLDDFDWRIVEAAYDLGATQWRALRDVVIPNCMPGIAAGIGLVFVPALGSYVIPNLLGGSHSMMIGNLIEMKFTQGRNWPLGASLSLALLGLVLAMMLARRLTSAKREVLA
>NZ_CP009165.1|WP_009969935.1|642618_643632_+|AraC-family-transcriptional-regulator
MASSDKPRSLAARRPASLHAVAVAVDMLQRRGLSTELILSGSGIAPAELRQPNKIISHAQEMVIYHNAWRMTGDSAIGLAMADAVPLTAYMPLGLAMMVSPTLGAAIELANSCPLLALCYFTTRLETKGSRAVITFSDYSYRPDLYVLNTDMCLAGLRRQMFDLLGGPPTFRQVTLAFDAPKHAYAYESLFQCPIRFSAPAHSFTLDANCMNTPLPMAHQLEHMIAKDACVRREQELEQWVAADVVGKALHYLYDHPFTGTVPALAGALGMSTRTLQRKLKQSGTSLQRLLEQVRRDLLIQDLALGSRSRKDIARHIGYKDPTSVSRARRRWAKEDS
>NZ_CP009165.1|WP_009972646.1|642177_642612_+|GNAT-family-N-acetyltransferase
MEFRPIKESDLGSTYDIRFSVTENRILPHQIHLLDRDRVLEQLRSGFGVLAIEGDAAVGYCTATGGRHAFINALFVRPAWHGAGVGREMLERALAWLREQGSESVSLVTDPGSRADGFYQHLGWIRGELDSYGCQVTFRKSLST
>NZ_CP009165.1|WP_044584018.1|640687_641779_-|phage-portal-protein
MSSWRRRASTTAPSACSNVTSSAATTLRNRPRQIRAPARAEVFTFDEPMPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSALFFKANVLASTFRPHRWLSRHAFERWALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFSGFVYVNGWQERHEFEPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFAELNDWLGEEVVTFDDYEIPPAPVAA
>NZ_CP009165.1|WP_004525837.1|653065_653614_+|hypothetical-protein
MEEAYARRALLLHLGSVLQILSRLEGAPDNQSIEALLAANGMLADVPLVEYVVQDMTVREFSARALRAFCLWPQLLLEDPLDCAALALPVRKHLFAGNDAGWKAYAATLREVSPGFDTARSYAAEPHEAEFDLADERDAETGDGPVERDDEADDDGRLRERAAASVESATPAGAPVRRESYE
>NZ_CP009165.1|WP_004543103.1|653876_655325_+|RNA-polymerase-sigma-factor-RpoD/SigA
MKVSARELRYEQGIDRLLELAGARDDTEYADVADEFASAPSSAFAHDLGEPDSLDHQASDESAGAGSFGDKPTRPAHGDTDVDTDWRDDDAPPSGSNDAAPVDTAASTDPLALFVRRMHAVPLLTHAQEIALAAEIEAGREQVLQALAEALDRLDLASLPADPALGRARAALQRARARGDEGARAFARARTAAYAALAAHGWPSAEVDAVRRAMRRLPTSPEKSDAGAQRAFADGEARISAATARMAEANLRLVLSIARKYASRGLDLADLLQEGNLGLLRAIEKFEHRRGFKFSTYATWWIRQAISRAIADRARTIRVPVHVGDEARRVRKAADRIERRSGVSASLAELSEATGLPAERLRAVLTLPREPRSLNAPLGDDDQAEFGDIVEDTSTPSLFDALAHGQMCDVVTSLLKTMSAQEADILRRRFGIGGDEPWSYEQIAARAGVSREQVRRIEKRALQTLRVTAEACNAHDFLDVQP
>NZ_CP009165.1|WP_004545670.1|655343_656957_-|glutamate--cysteine-ligase
MPNNMTSRQTDLLQQRLAVLSTSPTREQLPDGLRGIEKESLRVTRDGMIAFTPHPRALGSALTHPSLTTDYSEALVELITPAERDAATTLERLDELHRYVYASLGDEMLWTDSMPGLLPADDEIPIADYGTSNIGRLKTVYRRGLAYRYGRTMQCIAGIHYNYSLSEEVWRRLHAEEGSTAGIVDYQSERYLALIRNFRRTSWLLMYLFGASPALDAGFLRGRAHKLDTFDAATLYRPHATSLRMSDLGYSNTTAQAALQADYNTLSGYLDALSKAVSEPYPPYEAIGTHRDGEWIQINTNVLQIENEFYSTIRPKRVTYSGERPLHALASRGVQYIEVRCLDIDPFEPTGIALDTARFLDAYLLVCALDESAPLTCDAYRESNANFGRVTMEGRKPGLELTRDGAAVPMRAWADEIFAQIEAAGRVLDDIRGDDAHARAIAAQRAKLDDPELTSSARVLRAMRENGQSFLEFARAQSAAHAAYFHGRPLDEAATRDARALAERSLAEQAELEGKNAGSFDAFVAAYRAYTLNRFSV
>NZ_CP009165.1|WP_038729283.1|657115_658057_-|DNA-3-methyladenine-glycosylase-2-family-protein
MSAAVEPAAVRPDSVVLELPFKSPYDWPRVLRFFAGRAIPGVEAVGDGAYRRTVDHHGAIGTLTVRKHPRKRCLVALVEGDAARHADAAFAARLSTMFDLQADPAAIGAHLARDAWFAPLVGAAPGLRVPGAWSGFELIVRAIVGQQVSVKAATTIVGRLVERAGERLALHAPGAIGWRFPEPAALAACDVSRIGMPGKRAAALQGVARAVASGDVPLDAYASDPAGVRAALLALPGIGPWTVEYVAMRAWRDADAWPATDLVLMQAIVARDPALDRPASQRLRADAWRPWRAYAAMHLWNEIADRAGSARGG
>NZ_CP009165.1|WP_038738697.1|658053_659148_-|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada
MKQPPYPTDDARWAALVARDVDADGAFCYAVKTTGVFCRPSCASRLPRRENVSFFADTGAARAAGYRPCKRCRPEGLPRELDIVNRACAVLDAHRQDRFTLAQLSDAIHVSPFHLQRLFKRVVGVSPRQYQAAQRGAALRDALQSGAAVTRAAVDAGFNSPSRLYESVPRELGMSPSAFRRKGAGLKIDYATADTRLGVVLVAATSKGICKIAFGDAAAPLVDELRTGFANAQIAESPERIAPFIAQVDAYLNGTRRRFELPLDLAATEFQQRVWDALRRIPYGETRSYTQIAEALGAPRAVRAVASACASNPVALAIPCHRVVQKGGSLAGYRWGLPRKAALLDAEAQRAAGESVESAVDHAA
>NZ_CP009165.1|WP_004197761.1|659549_659966_+|VOC-family-protein
MKFHIHEIDHVVLRAADLAAMTRFYCDVLGCHVEKEQRELGLVQLRAGRSLIDLLAVGAPIDRAGSGAPGKGRNMDHLCLRVEPFDAAALRTHLAAHGARPGDEARRYGADGYGPSLYLFDPEGNMVELKGPPEAVAP
>NZ_CP009165.1|WP_004197759.1|660155_660710_-|YaeQ-family-protein
MALKSTIYKAELQIADMDRHYYADHSLTVARHPSETDERMMVRIAAFALFAHERLEFCKGLSDTDEPDLWQKDLTGAIEVWIDVGQPDERRIAKASGRAGRVNVIAYGGRTSDIWWQGARGKVERLRNVQVTTLADGVAAALGGLAERTMRLQCTIQDGAAWLSSATHDPVAIEWTTLKAREDA
>NZ_CP009165.1|WP_004524604.1|660924_661272_-|hypothetical-protein
MLKRTGLFLALTGGIVAFSVAQANGDVSLKPQQEIQLTKNAWGCLSKDNLDSVLNHERDGKAQAKQQYFDDYRCLSVPEGQRFRVVSVDKGDVQFVSAENSDQQGLWTDARFIKQ
>NZ_CP009165.1|WP_004524603.1|661757_662318_-|spermidine-N1-acetyltransferase
MQIQNEQHTLALRPLERQDLRFVHELNNDAKIMRYWFEEPYETFTELSQLYDQHVHDQRERRFVAFDSDGELVGLVELIELDYIHRRGEFQIIIAPNRQGRGFATRATRLAVEYAFKVLNLRKLYLIVDKSNVAAIRVYEKCGFKHEAELIEEFFGNGQYHNALRMCIFQRDYFAAQPGAELHARE
>NZ_CP009165.1|WP_004524602.1|662479_662650_+|hypothetical-protein
MIEQVILGVFLVLPLLIVAVLYSDELWQEHRLQHPRDEHTPHIDWRHPWRILRRGH

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Crispr_ID: NZ_CP009165_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009165_2

877381-877484

Orphan

Consensus_repeat	Method
ACCTCGCGAACTGGGCACGGGTACCTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009165_2

>merge|NZ_CP009165|2|877381-877484|CRISPRCasFinder
ACCTCGCGAACTGGGCACGGGTACCTCGTAAACTCGCTTGCTCAACCTCACGAAAAATTTTCGGCTGGCGCAGACGACCTCGCGAACTGGGTACGGGTACCTCG

>NZ_CP009165|2|2|877381-877484|CRISPRCasFinder
ACCTCGCGAACTGGGCACGGGTACCTCG	TAAACTCGCTTGCTCAACCTCACGAAAAATTTTCGGCTGGCGCAGACG
ACCTCGCGAACTGGGTACGGGTACCTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009165.1\|WP_038761792.1\|869506_870241_-\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238874
NZ_CP009165.1\|WP_044584019.1\|875236_876523_+\|integrase-arm-type-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|170049
NZ_CP009165.1\|WP_038761783.1\|888187_889105_+\|DUF4935-domain-containing-protein	unknown	unknown	gnl\|CDD\|374474
NZ_CP009165.1\|WP_038761786.1\|882122_885194_-\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|380293
NZ_CP009165.1\|WP_038761790.1\|870306_871101_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009165.1\|WP_004553012.1\|886903_887491_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NZ_CP009165.1\|WP_144402330.1\|880035_881121_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009165.1\|WP_038761785.1\|885186_885693_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379171
NZ_CP009165.1\|WP_004202927.1\|865496_866615_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NZ_CP009165.1\|WP_024430280.1\|887870_888188_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP009165.1\|WP_080298454.1\|881461_882139_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009165.1\|WP_004202928.1\|873808_874708_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|225784
NZ_CP009165.1\|WP_144402357.1\|877909_879343_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009165.1\|WP_004524472.1\|871398_873486_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|130146
NZ_CP009165.1\|WP_076804979.1\|886552_886732_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009165.1\|WP_038761784.1\|886026_886428_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP009165.1\|WP_038761720.1\|861545_864473_-\|aminomethyl-transferring-glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
NZ_CP009165.1\|WP_004546085.1\|867428_867782_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009165.1\|WP_144402329.1\|876534_876996_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009165.1\|WP_004195879.1\|865022_865403_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918

Protein	Function_ID	Function_description	E-value
NZ_CP009165.1\|WP_038761792.1\|869506_870241_-\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238874	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	2.65963e-67
NZ_CP009165.1\|WP_038761785.1\|885186_885693_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|379171	pfam13411, MerR_1, MerR HTH family regulatory protein.	0.00293075
NZ_CP009165.1\|WP_038761783.1\|888187_889105_+\|DUF4935-domain-containing-protein	gnl\|CDD\|374474	pfam16289, DUF4935, Domain of unknown function (DUF4935). This family consists of uncharacterized proteins around 350 residues in length and is mainly found in various species, such as Prevotella, Pseudomonas, Leptospira and so on. The function of this family is unknown.	2.0148e-18
NZ_CP009165.1\|WP_038761786.1\|882122_885194_-\|N-6-DNA-methylase	gnl\|CDD\|380293	NF033451, BREX_2_MTaseX, BREX-2 system adenine-specific DNA-methyltransferase PglX. This protein, PglX, is a site-specific DNA methyltransferase associated with PGL (phage growth limitation), a type 2 BREX (bacteriophage exclusion) system. The phage resistance appears not be restriction, but does manage to inhibit phage replication.	5.70407e-15
NZ_CP009165.1\|WP_004553012.1\|886903_887491_+\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.07016e-46
NZ_CP009165.1\|WP_004202927.1\|865496_866615_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NZ_CP009165.1\|WP_038761720.1\|861545_864473_-\|aminomethyl-transferring-glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
NZ_CP009165.1\|WP_004202928.1\|873808_874708_-\|c-type-cytochrome	gnl\|CDD\|225784	COG3245, CycB, Cytochrome c5 [Energy production and conversion].	1.10773e-20
NZ_CP009165.1\|WP_004524472.1\|871398_873486_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|130146	TIGR01074, ATP-dependent_DNA_helicase_Rep, ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP009165.1\|WP_038761784.1\|886026_886428_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.000236326
NZ_CP009165.1\|WP_044584019.1\|875236_876523_+\|integrase-arm-type-DNA-binding-domain-containing-protein	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	7.13659e-67
NZ_CP009165.1\|WP_024430280.1\|887870_888188_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	7.67238e-10
NZ_CP009165.1\|WP_004195879.1\|865022_865403_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	1.4325e-67

>NZ_CP009165.1|WP_144402329.1|876534_876996_-|hypothetical-protein
MPNAKSFTRTQRDTAAKNLAALPEKPENEHRLSTRDMVKSIQAHILAAQKKGYTFEEIADVISKAGVSVSVGTLKYAMRVVAEEKKHSQVSGGSTRTGNAQSSRKKSGLASPVRNGQSHVAPRLRESEKMNKPSITPIRGTFGFPINPDTENL
>NZ_CP009165.1|WP_044584019.1|875236_876523_+|integrase-arm-type-DNA-binding-domain-containing-protein
MGQLTDLKVKNAAHCEKEYFLPDGDGLYLRVRPTRKVWVYRYTRDGRSIKLSLGRYPIVSLAAARRKAREEMKRREDGIDPQKARREKWEQEQAARLNTFELVAREWHKASEKDRQWSAGYTEKIIRYLELHVFPWVGRLPVEEIKPTEVVRCLHRIKERGNLETAMRVRETIQHVYQYAVDTGVLEPAKNFVNGRTGGLPAVRSRHYPAITDPQQLGQLLRDIRAYNGHVITRAALQLAPLLFQRPGQLRFAHWEDIDLDDAVWVCPPEKMKMREWKKRDSRTPAHVVPLPSQAMEILRDLHPLTGPKGPIFRSVAKRSEATRYMSENTVNSALRTLGYDTKEQITGHGFRATARTLIREYLGWDREVIERHLAHASSEELGDSYDRATFLEQRREMVQDWADFLDELAAGNVPKPARTLRLVSRTA
>NZ_CP009165.1|WP_004202928.1|873808_874708_-|c-type-cytochrome
MSEAPHGAPIKTPGQLIAVVIASFVIPIAIIVLFATYANHAFRTGAGTDGLSDEAVAKRIAPLAQVDIKDANAPRVYKTGEEVYKAVCVTCHGTGAAGAPKFGDAAAWAPRIAAGYDEVLHLALTGKGAMPPRGGTNPDDYSDYEIARAVVYMANQGGAKFAEPAQPAANAAPASGAAAASAPGASDAAANSQAAAAMAAIAALPKAGEAPAAGANAESSASAGKALYESTCQACHATGVLNAPKFGNKADWAPRLKDSMDTVYNFALHGKGAMPPKGGSNASDADVKAAVDYMVNAAK
>NZ_CP009165.1|WP_004524472.1|871398_873486_+|UvrD-helicase-domain-containing-protein
MSAGLNSAQSEAVRYLDGPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERVGKLLEGKTLTTPGKEGRKVPVNQLTVCTFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQEQIGTTDKGLIRKIQTIISLWKNGLVAPEEAMTIAANEDEHQAALVYRNYVATLHAYQAVDFDDLIRLPTELFARNEPVRDRWQNRLRYLLIDEYQDTNACQYELLKLLAGPRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPKLHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEHGMGDSITVTPCNDEEHEAESVVFRLSAHKFERRTQFRDYAILYRGNFQARVFEQVLRRERIPYVLSGGQSFFDKAEIKDLCAYLRLIANADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGIEARLSARQVEPLRIFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAYDERQAQTKWQNVLEFLEWLKRKGTKPEAEQAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKEEDPDAVRLSTVHASKGLEYPHVFLVGVEEGIMPHSGGSDDGPIDDERIEEERRLMYVAITRAQRSLHLNWCKKRKRARETIVCEQSRFIAEMGLDEAPPPTPEEAPMTPKDRLASLKALLQK
>NZ_CP009165.1|WP_038761790.1|870306_871101_-|hypothetical-protein
MLALKLTLVPLFLLLVSIAGRRWGPSIAGWLAGLPVVACPILFLVAVERGPAFGAHAALLSLSAIAASEAFSFAYAWTCRRHRWPLALAAGLAAWAAAASALARLPATPPAATAVAFAATCFGQSCLPRGATLAPRAPLSHADLAGRLAAGAALALAVTSLAGALGPAWSGLFAVFPLLGSVLAVSSHRAHGPDFVVPLLRGMVFGRFSFAAFCLCVALTLPRQPALQAFAEAAALSVAVQGATKRLAARGPRPTALAQTATPD
>NZ_CP009165.1|WP_038761792.1|869506_870241_-|SGNH/GDSL-hydrolase-family-protein
MGYHFATAALGPLLLAQGRHVRRVTPRLAEADGPRGGADGAGPPLRLLVLGDSAAAGVGVASQSDALAGQLVRALAPFHRVEWRLLARTGATTRDLLDWLDAEPDARFDAVVTSLGVNDVTDGVPPARWLDAQAALVEQLTARFGAAHVVLTAVPPMHRFPALPQPLRWYLGLRAARLNAALSRWAAGRPACEFLRVDMPLTRDAMASDGFHPGTQACAAWAGQAAAAIRRRVAAATRLQAAVG
>NZ_CP009165.1|WP_004546085.1|867428_867782_-|hypothetical-protein
MQRLIRAAACCVLVSSLAACVVTPPRPAPAPRPSPQVVGYERMQQIQGRIDNLSHRIDARVNAGYYPPPQGAALHRRLDVIRQESTDMAAQHGGGLSGDEQRVLNQELDVAARAIGE
>NZ_CP009165.1|WP_004202927.1|865496_866615_-|glycine-cleavage-system-aminomethyltransferase-GcvT
MTVLKTTPLHAAHRALNARMVDFGGWDMPVNYGSQIEEHQAVRTDAGMFDVSHMCVVDFTGPRVRAFFEHAIANNVAKLQTPGKALYSCLLNPQGGVIDDLIVYYFTEEFFRVVVNAGTAEKDIAWFNQLNEQGGFGLTIAPRRDFAIVAAQGPNARAKVWDTVPCARAATSELKPFNAAQVAGTPFGDLTVARTGYTGEDGFEIIVPATHVEALWNALAERGVRPCGLGARDTLRLEAGMNLYGQDMDESVSPLDAGLAWTVDLSAPRAFVGRDALEAHGSRAAFVGLILQKENGRAGGVLRAHQKVATPHGEGEITSGTFSPSMQESIAFARVPKDVAIGDTVHVQIRDKQLPARVVKLPFVRNGKVLAA
>NZ_CP009165.1|WP_004195879.1|865022_865403_-|glycine-cleavage-system-protein-GcvH
MSNVPAELKYTDEHEWIRTEADGTLTIGITDHAQTTLGDIVFLELPKVGSQVKAGDAVGVVESVKAASDIYSPVTGEVIAINTDVADAPEEVNGDAYGAWLFKIKLAADASTDSLLDAAAYEKLVG
>NZ_CP009165.1|WP_038761720.1|861545_864473_-|aminomethyl-transferring-glycine-dehydrogenase
MKLEHPDRLMNRTPLSLAALETHDAFAERHIGPDAASQQAMLDTLGFATRAALIDAVIPASIRRAETLPLGPFAQPKSEAEALAALRALADKNQVFRSYIGQGYYDTHTPAVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQQMVADLTGLEISNASLLDEATAAAEAMTLLQRVGKPQSNVFYVADDVLPQTLEVIKTRAKPIGIEVKSGPAADAAAANAFGVLLQYPGANGDVRDYRALADAIHAAGGHVVVAADILALTVLMPPGEWGADVAVGNTQRFGVPMGFGGPHAAYMAVRDEFKRQMPGRLVGVTVDAQGKPALRLALQTREQHIRREKATSNVCTAQALLAIMASMYAVYHGPRGLKTIALRVNRIAALLAAGIRHLGYATVNDTFFDTLTIDTGARTAQLHAFAQAKRINLRRAGDTRVGVSVDETTTRADLADLLTIFAQAAGATAPDIDALDAGLLPAPALPPSLERTSAYLTHHVFNRHHSETEMLRYLRSLSDKDLALDRSMIPLGSCTMKLNATSEMLPVTWPEFGRIHPFAPAEQTVGYREMIDQLEQMLVAATGYAAVSLQPNAGSQGEYAGLLIIHAYHESRGESHRDVCLIPASAHGTNPASAHMAGMKVVVVACDAQGNVDIADLRAKADAHSNDLAAIMITYPSTHGVFEQNVREICEIVHAHGGQVYVDGANMNAMVGLTAPGQFGGDVSHLNLHKTFCIPHGGGGPGVGPVAVGPHLAKFLPNQRSTGYARGEDGIGAVSAAPYGSASILPISWMYIAMMGAKNLTATTETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKDSSGITVDDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESQEELDRFIAAMIAIRDEIRAVEEGRADREDNPLRHAPHTAAVVTANEWPHAYSREQAAFPVASLVANKYWPPVGRADNAYGDRNLFCSCVPVSDYA
>NZ_CP009165.1|WP_144402357.1|877909_879343_+|hypothetical-protein
MPSVPGAIAAPADYKNDLQVFEGNLMTFIGQHGLPTQNVLVPVAERVKVFGNVEDVLNRLSAEHKGKSVYVSKFIAAAAAGLFDSALNYLWDETIFELRKRIVRYDLEYFFDIAVTNPDKRKKLSTEDDLAKLDDNELVRGAAEMGLISELGFKHLDFIRYMRNWASAAHPNQNQITGLQLIAWFETCVTEVITLPETNSTAQIRALLANIRAHQLDAMGAKQTSGFFPELTSEQCNSLMSGFFGIYTNDTTLPLARDNVKQLATYLWPFVTEATRKTFGVKYGQFTANNDAAKAKWAREFLDLVGGASYIPDSIRAAEIGTAIDELLAAHRGYNNFHIEPSFARRLESLVGDKGDVPPVVAGRYVDALVEVYLTNGNGIAWSAEPVYQRLLGKFDSSQALLAALSFRNRDIASKLQFPLSESKYREIVALAKTKVSSPQGLDILKTIEDYKAPLQHMRDETKLMEKVNAITQSLGA
>NZ_CP009165.1|WP_144402330.1|880035_881121_+|hypothetical-protein
MKYVVMGVRMQMVFSRLGDRLVYGLKVFDDPEKAATLWSIVERKEELAALAALSTGEPCQVFLFNEIAVCVGWRETTINIPLSKFQMLSSGVETEAVDYSSLSQQVSALLDRPSLDDVPGNTVVIDIDGSKDWRPSINHFITNNASASSLDLFDRDEGNQQEQIGIWLTDSLHPSGSHHSPQIPKGSQTRELTDILLSYDHGSMLIESKALSIFPRDVLPSRARLAKDISGHVKKAVSQLRGGIRKIKAGVPVMNFEGETIEVERTRPMHAIVLIPDLDLIEDQHQYDSAFMAEFMEATGGFLHLLDVAELLRVVQAAEMIAARGTTTTPMMAFDYYLIERAKTALQAGSLCFEMLLRFEG
>NZ_CP009165.1|WP_080298454.1|881461_882139_-|hypothetical-protein
MHLSPDLPVGRPSFDLSEDQLATVVDLLCRGVATARPLLQPGMLEVPITIHVKKAMRRLKKELGLSNLEITGEFELLDLSNDDPEVLGRIDIILRFLHQFGDEEAYLGIECKRVGHGESALNQRYVTQGVDRFVTGQYATGHHWGIMLGYVLKLPSAAMVNGIDARIRTTYGEAAKLNDLDSHADALSVHSGDLAQGADGHVIRLMHIFVDTTPAAGVMGAELSA
>NZ_CP009165.1|WP_038761786.1|882122_885194_-|N-6-DNA-methylase
MGSAAFTKALTATGYLLSDGGPAPGLARAGEDAGARLRAVLSDSRVGLQAEAVFSAQSVPTAIFKDAGDEAPSEQQIAQWHEAAWNVGVAPLLWIITPTDVRLYDCYASPAKESPQQIATEPLDVFSLQAEDRLRSLDAMCGRYATETGAFWSSAIGKRIDRRHRVDRQLLDEINALEDRLTGLPPANGRPLPGEEDEAQASRDFAQRLIGRCIFTSYLIDRGIAQPFLPQEFSADVADMFATVDSAFRLFQWLRSTFNGDLFPMDDPGAEHQRFSDAHLDLLRDFVEGRSLLTGQGRLFRFRFDAIPVDLISSIYQQFARSSAADDAHTQGLHYTPVELVHLTLDPVFEALPTSARVIDPTCGSGAFLVEAFRRLVWKRTQGKAASRSIVRDVLYKQLYGIDINRSALGIAAFSLYLAALELDEEPVQDIQDLKFHRLIGTTLFEADTVHDDLPSLVTERPFDAVVGNPPWTFVKKAAASRKRKAADIQSSRPRRSPDQEFLWVASRLAGDAGRIGMIMKASPFFSKDVHAIQSRQALLSTLHPVALVNLSALRKEGLFPDATGPALLFFGRCALMDQQDRLLLGSIPWTPNFRRNGVFHIGPGELRSVSLPRVLRTPPMLKAATFGTARDGWLIEKLERTFPTLEKILDDAGLNIRGQGFQVNGGDDNEPPGHYDQLRVLTPDNYTPFRIDGRALPHFEHESLHRARNPAIFKGPLLICPEGSFLNTTGRYSSTVSSTDLLYTESFFGVSFAEHELDAALILSAILSSSLTTFQLAYGGGAWGLERTKVKPNDLLALRIPDLTAAEPSLLQAVRDAERRLARAPEDPESLEALDRSVYDLYDLERDEALLASDSVMRARMLLFEGHAQRLAFTRRPSTAELIAYAGEVVHTVNAYLRARGKRHLEAVIYPHRIAVGNAIDGTPGVDAVRFAMVAGAPPNVPCVHQGSDVEIDRLTPLLRGQVSSAVPPYLNERRQLRIYDESALFILKPSELRYWTRTAGLNDGDAILADHWIKGFHASVT
>NZ_CP009165.1|WP_038761785.1|885186_885693_-|MerR-family-transcriptional-regulator
MQLVPTRDATRLTGLSTEQLREWTSRRALIPPDVKPKGHGSPARYSWQTILLLRLAVVLRDRFKMELHAHRDLFAELGAGLARTSFLSLWGKSLALYGGTQWGLIDPRDEGVTIDDCIVLRLDPHLQQLSDSFALPKPAAPGQFQLFPALGVMVEAAANNSTGRRRHG
>NZ_CP009165.1|WP_038761784.1|886026_886428_-|helix-turn-helix-transcriptional-regulator
MNISSLIELAKDAAGSYGELAERIGRPASRISDWKAGRRKPDAADIMLLAEVAGRPVFETLAEIEMELDTERSSVWQRALGNLRAAGVAATVVLGATAVVSLTSKPADAAEKAQENKDLAPAGIERIGERLVR
>NZ_CP009165.1|WP_076804979.1|886552_886732_-|hypothetical-protein
MRLTWAALTIEARLLIAIALVTVFVAFRSDRRRVQLRRQKELDPIKRAIYNPKQFRRPR
>NZ_CP009165.1|WP_004553012.1|886903_887491_+|site-specific-integrase
MQSLGLDGGESRVRWISRSEATALILAAGAVARQPHLRNFVRLALSTGCRKNELLALEWHRVDFERSHFRLECEHTKNGKRRLVPLNSGALLALRDQRDWVARHCAGSEWVFASSSGRRVGNLQKGFVAACARAGIENFRIHDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLPL
>NZ_CP009165.1|WP_024430280.1|887870_888188_+|helix-turn-helix-transcriptional-regulator
MKRASAEGFNLIQHTVDDTEHLLAKPGVRAAYDALEDEYMALRAILAIRHEAGLTQAQVAERMGTTASAVSRLEASLSSEKHSPSFATLRKYAAACGKRLVISFA
>NZ_CP009165.1|WP_038761783.1|888187_889105_+|DUF4935-domain-containing-protein
MVPKAREDSCKKWETKMAGGIQKLLFIDTNIWLDFYRARNEAYLGLLPPLETLSNRIIVTHHLESEYKRNRQSVILESVSELKNKMPDKVPSIGVLATTREFGMLKRDIDNARKRIKNLQGKLISILERPAEKDQIYQVVHRIFHRDHPLVLTREERHNNARKDIRDRAYRRFMHGCPPRKRNDTSYGDAINWEWMIDCAIQANAELVIVSRDGDYGSTYDSKSYINDHLRQEFSNRVSQKRELLLYTRVSDALKHFHVAVTHAQEKAEADLVEQMALGDKFLSQSQPMQDIASIGDNAMENGLE

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Crispr_ID: NZ_CP009165_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009165_3

3295509-3295704

Orphan

Consensus_repeat	Method
GCAGTCAGCAGTCAGCAGTCAGCAGTCAGCAGTCAGCAGTCAGCA	CRISPRCasFinder

2 spacers

DEDDh

The CRISPR arrays of NZ_CP009165_3

>merge|NZ_CP009165|3|3295509-3295704|CRISPRCasFinder
TGAACCGACGGTCAGCGGTCAGCGGTCAGCGGTCAGCGGTCAGCGGTCAGCGGTTGGCGGTTGGCGGTTGGCGGTTGGCAGTCAGCGATCAGCGGTTGGCAGTCAGCAAGCAGTCGGCGATCCGCAGTCAGCAGTCAGCAGTCAGCAGTCAGCAGTCAGCAGTCAGCAGTCAGCAGTCAGCAGTCAGCAGTCAGCA

>NZ_CP009165|3|3|3295509-3295704|CRISPRCasFinder
TGAACCGACGGTCAGCGGTCAGCGGTCAGCGGTCAGCGGTCAGCG	GTCAGCGGTTGGCGGTTGGCGGTTGGCGGTTG
GCAGTCAGCGATCAGCGGTTGGCAGTCAGCAAGCAGTCGGCGATC	CGCAGTCAGCAGTCAGCAGTCAGCAGTCA
GCAGTCAGCAGTCAGCAGTCAGCAGTCAGCAGTCAGCAGTCAGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009165.1\|WP_004191701.1\|3301711_3302659_-\|biotin-independent-malonate-decarboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|235954
NZ_CP009165.1\|WP_038760549.1\|3297790_3298729_-\|malonate-decarboxylase-subunit-epsilon	unknown	unknown	gnl\|CDD\|132175
NZ_CP009165.1\|WP_004192921.1\|3289468_3290281_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP009165.1\|WP_004538429.1\|3302986_3304633_-\|malonate-decarboxylase-subunit-alpha	unknown	unknown	gnl\|CDD\|379906
NZ_CP009165.1\|WP_038760583.1\|3304629_3304944_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009165.1\|WP_004531112.1\|3290781_3291504_+\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235574
NZ_CP009165.1\|WP_004192690.1\|3288641_3289448_-\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|274569
NZ_CP009165.1\|WP_038759568.1\|3295831_3296713_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|227099
NZ_CP009165.1\|WP_038743917.1\|3284274_3285417_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009165.1\|WP_004526570.1\|3285523_3286762_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341028
NZ_CP009165.1\|WP_004526559.1\|3300999_3301725_-\|biotin-independent-malonate-decarboxylase-subunit-gamma	unknown	unknown	gnl\|CDD\|274441
NZ_CP009165.1\|WP_004192791.1\|3302655_3302973_-\|malonate-decarboxylase-acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179367
NZ_CP009165.1\|WP_038760547.1\|3297151_3297637_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197267
NZ_CP009165.1\|WP_004193459.1\|3291880_3292213_-\|YnfA-family-protein	unknown	unknown	gnl\|CDD\|235016
NZ_CP009165.1\|WP_004526560.1\|3300101_3301025_-\|malonate-decarboxylase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|234998
NZ_CP009165.1\|WP_162483181.1\|3298725_3300105_-\|triphosphoribosyl-dephospho-CoA-synthase-MdcB	unknown	unknown	gnl\|CDD\|274440
NZ_CP009165.1\|WP_038761191.1\|3294747_3295377_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198314
NZ_CP009165.1\|WP_004538424.1\|3286896_3288489_-\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|182727
NZ_CP009165.1\|WP_004198608.1\|3292748_3294236_+\|glycine-betaine/L-proline-transporter-ProP	unknown	unknown	gnl\|CDD\|182611
NZ_CP009165.1\|WP_004193456.1\|3290277_3290724_+\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|178927

Protein	Function_ID	Function_description	E-value
NZ_CP009165.1\|WP_004191701.1\|3301711_3302659_-\|biotin-independent-malonate-decarboxylase-subunit-beta	gnl\|CDD\|235954	PRK07189, PRK07189, malonate decarboxylase subunit beta; Reviewed.	4.03947e-152
NZ_CP009165.1\|WP_038760549.1\|3297790_3298729_-\|malonate-decarboxylase-subunit-epsilon	gnl\|CDD\|132175	TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.	8.04778e-96
NZ_CP009165.1\|WP_004192921.1\|3289468_3290281_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	2.11351e-12
NZ_CP009165.1\|WP_004531112.1\|3290781_3291504_+\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|235574	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional.	4.34032e-156
NZ_CP009165.1\|WP_004192690.1\|3288641_3289448_-\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|274569	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). [Cellular processes, Detoxification].	4.80363e-135
NZ_CP009165.1\|WP_004193456.1\|3290277_3290724_+\|ribonuclease-HI	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	3.16162e-105
NZ_CP009165.1\|WP_038759568.1\|3295831_3296713_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|227099	COG4757, COG4757, Predicted alpha/beta hydrolase [General function prediction only].	1.3242e-54
NZ_CP009165.1\|WP_004538429.1\|3302986_3304633_-\|malonate-decarboxylase-subunit-alpha	gnl\|CDD\|379906	pfam16957, Mal_decarbox_Al, Malonate decarboxylase, alpha subunit, transporter. Mal_decarbox_Al is a family of Na+-transporting carboxylic acid decarboxylases.	0
NZ_CP009165.1\|WP_004526570.1\|3285523_3286762_-\|MFS-transporter	gnl\|CDD\|341028	cd17475, MFS_MT3072_like, Mycobacterium tuberculosis uncharacterized MFS-type transporter MT3072 and similar transporters of the Major Facilitator Superfamily. This family includes the Mycobacterium tuberculosis uncharacterized MFS-type transporter MT3072. It belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.73763e-22
NZ_CP009165.1\|WP_004526559.1\|3300999_3301725_-\|biotin-independent-malonate-decarboxylase-subunit-gamma	gnl\|CDD\|274441	TIGR03134, malonate_gamma, biotin-independent malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.	2.10581e-93
NZ_CP009165.1\|WP_004192791.1\|3302655_3302973_-\|malonate-decarboxylase-acyl-carrier-protein	gnl\|CDD\|179367	PRK02103, PRK02103, malonate decarboxylase acyl carrier protein.	1.13584e-60
NZ_CP009165.1\|WP_004193459.1\|3291880_3292213_-\|YnfA-family-protein	gnl\|CDD\|235016	PRK02237, PRK02237, YnfA family protein.	5.378e-39
NZ_CP009165.1\|WP_004526560.1\|3300101_3301025_-\|malonate-decarboxylase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|234998	PRK02098, PRK02098, phosphoribosyl-dephospho-CoA transferase; Provisional.	4.62841e-61
NZ_CP009165.1\|WP_162483181.1\|3298725_3300105_-\|triphosphoribosyl-dephospho-CoA-synthase-MdcB	gnl\|CDD\|274440	TIGR03132, malonate_mdcB, triphosphoribosyl-dephospho-CoA synthase MdcB. This protein acts in cofactor biosynthesis, preparing the coenzyme A derivative that becomes attached to the malonate decarboxylase acyl carrier protein (or delta subunit). The closely related protein CitG of citrate lyase produces the same molecule, but the two families are nonetheless readily separated. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	8.28689e-93
NZ_CP009165.1\|WP_038761191.1\|3294747_3295377_-\|glutathione-S-transferase	gnl\|CDD\|198314	cd03205, GST_C_6, C-terminal, alpha helical domain of an unknown subfamily 6 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs, including Pseudomonas fluorescens GST with a known three-dimensional structure. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Though the three-dimensional structure of Pseudomonas fluorescens GST has been determined, there is no information on its functional characterization.	3.25016e-32
NZ_CP009165.1\|WP_004538424.1\|3286896_3288489_-\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|182727	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional.	3.87155e-87
NZ_CP009165.1\|WP_004198608.1\|3292748_3294236_+\|glycine-betaine/L-proline-transporter-ProP	gnl\|CDD\|182611	PRK10642, PRK10642, proline/glycine betaine transporter ProP.	0
NZ_CP009165.1\|WP_038760547.1\|3297151_3297637_-\|hypothetical-protein	gnl\|CDD\|197267	cd09170, PLDc_Nuc, Catalytic domain of EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins. Catalytic domain of an EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins. Nuc is an endonuclease cleaving both single- and double-stranded DNA. It is the smallest known member of the phospholipase D (PLD, EC 3.1.4.4) superfamily that includes a diverse group of proteins with various catalytic functions. Most members of this superfamily have two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in a single polypeptide chain and both are required for catalytic activity. However, Nuc only has one copy of the HKD motif per subunit but form a functionally active homodimer (it is most likely also active in solution as a multimeric protein), which has a single active site at the dimer interface containing the HKD motifs from both subunits. Due to the lack of a distinct domain for DNA binding, Nuc cuts DNA non-specifically. It utilizes a two-step mechanism to cleave phosphodiester bonds: Upon substrate binding, the bond is first attacked by a histidine residue from one HKD motif to form a covalent phosphohistidine intermediate, which is then hydrolyzed by water with the aid of a second histidine residue from the other HKD motif in the opposite subunit.	1.09197e-23

>NZ_CP009165.1|WP_038761191.1|3294747_3295377_-|glutathione-S-transferase
MKLIGMLDSPFVRRVAISAKLLGLPFEHHSISVFRQFDAFKSFNPVVKAPTLLTDDGTMLVDSSLIVDYLDRLVAPQRRLVPDDLPARVRVLELTGLALSAAEKTVQVVYEHGLRPGEKQHQPWLDRVLGQLDAAYGALDARIAGASGWLVGERITQADVTVAVAWRFTQFMQGDYPDLARVDPVRYPALAALSARAEALPEFEGTPLD
>NZ_CP009165.1|WP_004198608.1|3292748_3294236_+|glycine-betaine/L-proline-transporter-ProP
MTATPAPSSSSSAPTEGALPAAAHEITVVDQGLLKRAVGAMALGNAMEWFDFGVYSYIAVTLGQVFFPSSSPSAQLLATFGTFAAAFLVRPLGGMVFGPLGDRIGRQRVLAMTMIMMAVGTFAIGLIPSYDSIGLLAPVLLLVARLVQGFSTGGEYGGAATFIAEFSTDKRRGFMGSFLEFGTLIGYVMGAGVVALLTASLSHDALLSWGWRVPFLIAGPLGLIGLYIRMRLEETPAFKRQAEAREAQDKAVPKAHFRRQLARHWRALLLCVGLVLIFNVTDYMALSYLPSYLSSTLHFDEAHGLVLILIVMVLMMPMTLATGRLSDAVGRKPVMLAGCVGLFALAIPALLLIRTGETALVFGGLLILGALLSCFTGVMPSALPALFPTEIRYGALAIGFNVSVSLFGGTTPLAAAWLVDATGNLMMPAYYLMGAAVIGAISVLALPESARQPLKGSPPAVASHREAHALAREIKRREAAERDDSGYPSAAALRA
>NZ_CP009165.1|WP_004193459.1|3291880_3292213_-|YnfA-family-protein
MLSLAKIAALFVLTAVAEIVGCYLPWLVLKAGKPAWLLAPAALSLALFAWLLTLHPAAAARTYAAYGGVYIAVALAWLRIVDGVPLSRWDVAGAALALAGMSVIALQPRG
>NZ_CP009165.1|WP_004531112.1|3290781_3291504_+|DNA-polymerase-III-subunit-epsilon
MRQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGKNLHFYVNPERDSDPGALAVHGLTTEFLSDKPKFAEIVDPLRDFVRDAELIIHNAPFDLGFLDAEFALLGLPSFTDHCAGVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDMLDEAGDAHRNGDAPRMAFSGLDLPVLAATDAELAAHEAQLDALDKSAKGVCVWRKEAVGEA
>NZ_CP009165.1|WP_004193456.1|3290277_3290724_+|ribonuclease-HI
MTLQTIDIYTDGACKGNPGPGGWGALLRYGAQEKELFGGEPGTTNNRMELTAVIAALEALKRPCKVVVHTDSQYVQKGISEWIHGWKKKGWVTAAKTPVKNADLWQRLDALVAQHDVEWRWVKGHAGHPENERADALANRGVESLAQA
>NZ_CP009165.1|WP_004192921.1|3289468_3290281_+|class-I-SAM-dependent-methyltransferase
MSDRSIIDWPAWTDSPPGRYVLGWEQAQLDRTVSDVFGFHALQLGLPQLDALRENRMPCRGLVLDPASGASAPYHYPWAREARSAEHAPAGRSTVWCDLLDLPFESQSVDLIVMPHTLEFTSDPHRLLREAERVLMPEGQLVITGFNSLSLWGARHSVGKMAKRPFVPATRDQITFIRLKDWIKLLGFDLERGRFGCYRPPLATDKWLSRYAFMEAAGDRWWPIFGAVYMVTAIKRVRGMRLVGPIKMKKPVLAPGLTPAATPTTHQEHS
>NZ_CP009165.1|WP_004192690.1|3288641_3289448_-|hydroxyacylglutathione-hydrolase
MNELEYVPVPAFDDNYIWLVSDGRQAVAVDPGEAAPVRRHLDARGWRLTAILLTHHHRDHVGGVAELLAGAREGEPIAVFGPAHEAIEHITRRVAGGERVRIGAPALEFDVIDVPGHTRGHIAYFQPAGPGNAAPHLFCGDTLFSCGCGRLFEGTPAQMLASLDALAALPGDTRVHCAHEYTLSNIQFALACEPGNAALAAWRDEALARRARGEPTLPTTIAHECAVNPFLRADSASIRATLEARLHEAAPDRLAAFTLMREWKNRFR
>NZ_CP009165.1|WP_004538424.1|3286896_3288489_-|transglycosylase-SLT-domain-containing-protein
MRFLLSALLVLTLAACAGTGPTAQNPAASDPQAASDYLRKSASAKETVDVDKQSVGDLTTADSDLWARIRRGFQMPDLQSDLVDMQASWYAQRPDYVQRMTERSQKYLYHIVEELESRHMPTELALLPFIESAYNPQALSVAKAAGMWQFMPATGRTFNLKRNMWQDERRDVLASTSAALDYLSRLHDMFGDWYLALAAYNWGEGNLQRAIARNQAAGLPTDYQSLRMPNETRNYVPKLQAVKNIVTNPQQYGLTLPEIPNHPYFVTVTTSRDIDVTVAAKLANLPLDEFKSLNPSFSKPVILGATQPQILLPFDNAAAFEKGLKSYDGQLSSWTAYTVTERARPAAIAEKIGVDADTLMQVNKIPAGMRLKPGSTIVVPRTDDDDEDISADVAENGVLAMEPDVPDTRKMLIRVRRKQSMEALASRYGVSVAQLRGWNRTRRAVVMPGQTMVLHVPVGRAVPAEPGPERIATSVGGGRIERASLHTGGKASSRGRKAGPAAKASAKAATKSGAKAAPAKTAGRKTTKKK
>NZ_CP009165.1|WP_004526570.1|3285523_3286762_-|MFS-transporter
MIVMSLMQFRVFALFAIGYFVSYVFRGVNLGFAPLITRELGLSAADLGLLTSLYFLGFACAQIPAGVLLDRYGPRRVSAALLLVAAAGAWVFGAAHDIGAMMLGRLLIGVGVSVCLGGAFKALAQHFPVARLPLLNGFVMAVGGLGGVAVGSPLDWLLGFAGWRAVCAGLGAFTVAVAAALWAFAPDARQSRHDASVAAQFAGTWRIVTNRTFWKIASFSVVTQGVFYAMQSLWVGAYLRDVSGFAPRDAAVLVSVLGFAMMAGCVGFGAAARGLERRGMSLYAFCGFGMALFVATQLAIMLRAPLPAAVLWAAYGVFGGVGILSYAVLAEYFPVHVIGRANTTLTLVIFVLIFGFQVGVGAVLSHWPMRAGHYPAEAHLSAWGALVALQIASAVWYVLPDRALDKSARHAG
>NZ_CP009165.1|WP_038743917.1|3284274_3285417_+|hypothetical-protein
MSTILAPHSGAAPTLPLIDSGHRRRGWRGWRGRLIAKAAMQILRPVEPCVQHGLPAPTTFPPNGGARRFGLVHYGIMIPDLPAPHRFMATAIILGSAGMRVFDADFAAAPGDGPLQTATLVHGTAAAVDRHFTRYSIPRDVESRADGSLLRLGDDLELSGRYPEFRLESRRDGFAADLTLTATGDVTWFAKGLFYEHIALVTRYRGTIEHGGATTEVAGLCTYEYARGTSPYLLRNRFLPQAAKLPWDVFSYQVIDLDADTQLLLAHVQVDHYPALTSAYLRVIGQRAHRLDADVHFRVTSTQARPAVGPDGHAMWLPETFAWRVRDRRGRTLFAIDATVDTPMLFGIGTGYVGGYRWEGERDGRPASGRGYIEYVDRRG
>NZ_CP009165.1|WP_038759568.1|3295831_3296713_-|alpha/beta-fold-hydrolase
MHERPPITAETTWFAARDGRLLTGTFYAPGAPSASNGRSVLVSGALGVPRGFYERYARFLASDGFTVLTYDYRGIGDSRKPPAEADGASLRDWGEADLPGALDHLAARAPSHRLLAVAHSVGGQLFGLAHNNGRAAALLSICCPSGYWRLWPWPHRLWLAPLWFCVVPALGGVLSHLPVRRAGLGFAADLPAGVMREWARWCRHADYLVDDEGHPLREHFRSYRGRILAYTVSDDWMAPPAAVQALHRFYSTAQVEHREIAPDRRRHAIGHFGYFRDDNRALWPLGAAWLREQ
>NZ_CP009165.1|WP_038760547.1|3297151_3297637_-|hypothetical-protein
MSAFECARAAQLPSRDAALGAYFDADAGSTDIEVDLIHRAHTRVLVAGGASVPAAVAAALCAARGRGVDVRVVLDRTGRATRYSGAAFLANAGIDVVLSDRVPNAHGPFVVVDDAVVLGRASFAQTRDARAAGNFDVFYRAPQLAQSYATAFWRLYGLARR
>NZ_CP009165.1|WP_038760549.1|3297790_3298729_-|malonate-decarboxylase-subunit-epsilon
MTIAILCSGQGGQHAGMFALTADLPEAAPLFAHAAALLGADPREWVCDADDEALRENFAAQLVCTLQAVAAMTRLDALLPRRRCVAGYSVGELAAWSVAGLVEARDALDLVAARARAMDAASDGDARMLFVRGLARDAVDASCAAHGAAVAIVNPGDAYVLAGPRAALDALAADARARGAARVTPVCVRVASHTRWLDAAVPRFRAALAGARIARAPAPGTRLLSGIDGAPVLDVAAGADKLARQIAEPLDWAACVAGCVEAGARAFVELGPGRALAEMAAAAFPALPARSLADFRSWDGVRAWLSRVDLDA
>NZ_CP009165.1|WP_162483181.1|3298725_3300105_-|triphosphoribosyl-dephospho-CoA-synthase-MdcB
MKRNACAVAKPARRDAMCRDRARALDDGGGADTLLDALDALDALDALDALDALDALDALDALDASGVSNASNSMGAGDASNRPNIAAVSSIWASQYFLPATRNASDGADARDSRGRRRHPTFAAHRLASLTATATATATATATATAAAAAAAAATAAATPASIPTPTPRPTSTSTPTPTATAIAANAVRCLRAEIDTWPKPGLVSHVDAGSHDDMTADTFYRSAAALAPFFAELADAGARDAGMPALRKIGLRAERAMLAATGGVNTHRGAIFGLGLLCAAAGLRGSRERRAQRGQAAGATLGDLVAARWGDEIAGGPRAADSHGARAARRYGAGGARAEAAGGFARVYAVGVPALRDGARRARGDAEAARVHACFALIAALDDDTNLLHRGGRDGLDFAQRTAREFLAAGGVGACDWRARAAAAHRAFVARRLSPGGAADLLAMSLFVAALDDARALP
>NZ_CP009165.1|WP_004526560.1|3300101_3301025_-|malonate-decarboxylase-holo-[acyl-carrier-protein]-synthase
MSSRAPAADAPLVRHTLVRVRAQAWPALLAAHGGIGTLPFVRDWAARGWPLIVRRRSPCDAGVPLGLPLPPSAGKRRVALAAAREQIDSACALPTLADVGRQAPPAWRPTLARLRALADAHRVDCRVFGSLAWQTLTGLRYLSDESDLDVLLMPGGASSSASLFRFSSSFASSFASVSVPPPSPSVSIPQSSRAWPVPALAGASAAAVTGAEASAPMTAQMEASASRLSRWPGSSSMPSRRDAIAPFLAALAEIDADAPMRIDGELLCADGAGVNWRELHAGGRAVAMKTATGVELVAPRTFLEAWR
>NZ_CP009165.1|WP_004526559.1|3300999_3301725_-|biotin-independent-malonate-decarboxylase-subunit-gamma
MTLDDVLASLFPSGYDVAADAAGLLAGHGMLAGRALDVIGVAHGAALGVDGALALAERVLATIRRGGETPILVLVDGDSQRMSKRDELLGLNECLAHLAKCLLHADALGHPTIGLLYGHAAAGAFIATALATRTLVALPGAQPEVMDLQAISRVTKLPVDVLREKARSTAVFAPGLENFAKTGAVDAVLDPARPLAEQLAAVLARPADRCDRRDRYGAERGGRPVAADVAQRVYELARAGR
>NZ_CP009165.1|WP_004191701.1|3301711_3302659_-|biotin-independent-malonate-decarboxylase-subunit-beta
MNAAATTLHPKLAPAGASWFEASARQRLAGLVDAGSLDEFAGPPARLASPHLPLFDLPQQFDDGMIVGRATLAGEPVFVAAQEGRFMGGAFGEVHGAKLTGLLRAARELRAAPVLILFDTGGVRLQEANAGEIAVSEIVRAVIDARAAGVPVVGLVGGRAGCYGGGGIIAACCSALAVSEAGRIGVSGPEVIESRRGVDEFDSRDRALVWRTMGGKHRRLVGGADAFVDDTIDAFRHAAIALLARVRAGGAFGTATLEAEHARLAARIARFRDCDDALDVWRALGAPDAGAIPALDAAAFAALADRLTEVCDDAR
>NZ_CP009165.1|WP_004192791.1|3302655_3302973_-|malonate-decarboxylase-acyl-carrier-protein
MEQLNYRHTARARAKGDAEWALVGVVASGNLEVLVERVLPGNECEVDIRTAAVGFGDVWQAVVADFVERRSPGGLRLSVNDGGARPDMVSLRLAQAVRAIEANAR
>NZ_CP009165.1|WP_004538429.1|3302986_3304633_-|malonate-decarboxylase-subunit-alpha
MTGWNEARAARAARLAAAAPLARGKRVAARDATALLEAVLRPGERVCIEGDNQKQADLLAAALAAVDSAKVHGLHMVQSGVVLPEHLDVFERGIAKRLDYAYSGPQSQRIAKLLFGGGIELGAVHTYLELFARYFIDLTPHVALIAAVSADADGNLYTGPNTEDTPTVVEATAFKDGIVIAQVEKIVERVPRVDIPGDRVHFVVEAGRPFYVEPLFTRDPAGITETQILTAMLAIKGIYARYGVKRLNHGIGFNTAAIELLLPTYGERLGLKGQVCTHWALNPHPTLIPAIESGWVEQIHCFGSEVGMDDYIRARSDIFFTGADGSLRSNRAFCQTAGLYACDLFIGSTLQIDLAGHSSTVTAERIAGFGGAPNMGSDARGRRHPSEPWLKAGEEADARTPAALRRGRKLVVQIGETFGEKNAPMFVEQLDALRLADKLALDLAPVMVYGDDVTHVVTEEGIANLLMCRDADEREHAIRGVAGYTEIGRGRDRRLVERLRERGVIRRPEDLGIDALDADRRLLAARSIKDLVHWSEGLYAPPARFRNW
>NZ_CP009165.1|WP_038760583.1|3304629_3304944_-|hypothetical-protein
MALFREIAREIARESARDIACGNEAARAARGGTRGFDPERGANDANDANDANDANDAKAACAAFAPRSIARATESYRATSSIAPAVRLTMPQNQPGRISQETIL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009165_3	3.2\|3295631\|29\|NZ_CP009165\|CRISPRCasFinder	3295631-3295659	29	NZ_CP046723	Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence	519696-519724	4	0.862
NZ_CP009165_3	3.2\|3295631\|29\|NZ_CP009165\|CRISPRCasFinder	3295631-3295659	29	NZ_CP046723	Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence	519703-519731	4	0.862
NZ_CP009165_3	3.1\|3295554\|32\|NZ_CP009165\|CRISPRCasFinder	3295554-3295585	32	MN694006	Marine virus AFVG_250M23, complete genome	320-351	6	0.812
NZ_CP009165_3	3.1\|3295554\|32\|NZ_CP009165\|CRISPRCasFinder	3295554-3295585	32	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	773062-773093	6	0.812
NZ_CP009165_3	3.1\|3295554\|32\|NZ_CP009165\|CRISPRCasFinder	3295554-3295585	32	NZ_CP038636	Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence	291033-291064	6	0.812
NZ_CP009165_3	3.1\|3295554\|32\|NZ_CP009165\|CRISPRCasFinder	3295554-3295585	32	NZ_CP027299	Streptomyces sp. SGAir0924 plasmid unnamed_5	61800-61831	7	0.781
NZ_CP009165_3	3.1\|3295554\|32\|NZ_CP009165\|CRISPRCasFinder	3295554-3295585	32	NZ_CP017887	Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence	359387-359418	7	0.781
NZ_CP009165_3	3.1\|3295554\|32\|NZ_CP009165\|CRISPRCasFinder	3295554-3295585	32	MN694006	Marine virus AFVG_250M23, complete genome	327-358	8	0.75
NZ_CP009165_3	3.2\|3295631\|29\|NZ_CP009165\|CRISPRCasFinder	3295631-3295659	29	NC_008242	Chelativorans sp. BNC1 plasmid 1, complete sequence	175766-175794	8	0.724
NZ_CP009165_3	3.1\|3295554\|32\|NZ_CP009165\|CRISPRCasFinder	3295554-3295585	32	NZ_CP017887	Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence	359401-359432	9	0.719

1. spacer 3.2|3295631|29|NZ_CP009165|CRISPRCasFinder matches to NZ_CP046723 (Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence) position: , mismatch: 4, identity: 0.862

cgcagtcagcagtcagcagtcagcagtca	CRISPR spacer
tgtagtcagtagtcagtagtcagcagtca	Protospacer
.*.******.******.************

2. spacer 3.2|3295631|29|NZ_CP009165|CRISPRCasFinder matches to NZ_CP046723 (Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence) position: , mismatch: 4, identity: 0.862

cgcagtcagcagtcagcagtcagcagtca	CRISPR spacer
agtagtcagtagtcagcagtcagcagtaa	Protospacer
 *.******.***************** *

3. spacer 3.1|3295554|32|NZ_CP009165|CRISPRCasFinder matches to MN694006 (Marine virus AFVG_250M23, complete genome) position: , mismatch: 6, identity: 0.812

gtcagcggttggcggttggcggttggcggttg	CRISPR spacer
ggtggcggttgacggttggcggttgacggttc	Protospacer
* ..*******.*************.*****

4. spacer 3.1|3295554|32|NZ_CP009165|CRISPRCasFinder matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 6, identity: 0.812

gtcagcggttggcggttggcggttggcggttg	CRISPR spacer
gggggcggtcggcggttggcggtcggcggtcg	Protospacer
*  .*****.*************.******.*

5. spacer 3.1|3295554|32|NZ_CP009165|CRISPRCasFinder matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-gtcagcggttggcggttggcggttggcggttg	CRISPR spacer
aatcggc-gttggcggtaggcggtaggcggtag	Protospacer
 .**.** ********* ****** ****** *

6. spacer 3.1|3295554|32|NZ_CP009165|CRISPRCasFinder matches to NZ_CP027299 (Streptomyces sp. SGAir0924 plasmid unnamed_5) position: , mismatch: 7, identity: 0.781

gtcagcggttggcggttggcggttggcggttg	CRISPR spacer
tccggcggtcggcggtcggcggttggcgcctg	Protospacer
 .*.*****.******.*********** .**

7. spacer 3.1|3295554|32|NZ_CP009165|CRISPRCasFinder matches to NZ_CP017887 (Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

gtcagcggttggcggttggcggttggcggttg	CRISPR spacer
gttttcggttggcggttttcggttggcggtat	Protospacer
**.  ************  ***********

8. spacer 3.1|3295554|32|NZ_CP009165|CRISPRCasFinder matches to MN694006 (Marine virus AFVG_250M23, complete genome) position: , mismatch: 8, identity: 0.75

gtcagcggttggcggttggcggttggcggttg	CRISPR spacer
ccgggacggtggcggttgacggttggcggttg	Protospacer
 . .*  * *********.*************

9. spacer 3.2|3295631|29|NZ_CP009165|CRISPRCasFinder matches to NC_008242 (Chelativorans sp. BNC1 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.724

cgcagtcagcagtcagcagtcagcagtca	CRISPR spacer
cgcagtcagcagtcagccttcagataaag	Protospacer
*****************  ****  .  .

10. spacer 3.1|3295554|32|NZ_CP009165|CRISPRCasFinder matches to NZ_CP017887 (Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gtcagcggttggcggttggcggttggcggttg	CRISPR spacer
gatacgtcttggcggttttcggttggcggttt	Protospacer
* .*    *********  ************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

397433 : 446038

Burkholderia_virus(30.0%)

holin,integrase,transposase

attL 427019:427036|attR 431497:431514

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158333048.1\|397433_398057_+\|transposase	transposase	NA	NA	NA	NA
WP_038723871.1\|398855_399197_+	hypothetical protein	NA	NA	NA	NA
WP_038723678.1\|399315_399540_+	hypothetical protein	NA	NA	NA	NA
WP_004543938.1\|399735_399894_+	hypothetical protein	NA	NA	NA	NA
WP_004543934.1\|400196_400745_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	9.3e-75	78.7
WP_038748018.1\|400741_401503_+	nuclease	A4JWV4	Burkholderia_virus	2.1e-56	53.7
WP_004543876.1\|401508_402618_+	DUF3396 domain-containing protein	A4JWV3	Burkholderia_virus	1.2e-124	58.0
WP_076905408.1\|404263_405418_+	ATP-binding protein	NA	NA	NA	NA
WP_143299369.1\|405417_406005_+	hypothetical protein	NA	NA	NA	NA
WP_076905409.1\|406481_407306_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.5e-57	45.2
WP_038802333.1\|407353_408473_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.6e-49	39.5
WP_080298570.1\|410230_411940_+	TIGR04141 family sporadically distributed protein	NA	NA	NA	NA
WP_038761637.1\|411964_414754_+	SEC-C domain-containing protein	NA	NA	NA	NA
WP_038761638.1\|415050_416166_-	5-methylcytosine-specific restriction endonuclease system specificity protein McrC	NA	NA	NA	NA
WP_100086167.1\|416168_418004_-	AAA family ATPase	K4I1H4	Acidithiobacillus_phage	5.8e-28	33.8
WP_038739071.1\|418074_418791_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_038745127.1\|418799_421886_-	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	4.6e-54	27.6
WP_144402323.1\|421895_423149_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_038761640.1\|423139_425542_-	N-6 DNA methylase	A0A2H4PQP4	Staphylococcus_phage	9.4e-71	37.2
WP_144402324.1\|425613_425865_+	hypothetical protein	NA	NA	NA	NA
WP_038761641.1\|426519_426714_-	hypothetical protein	NA	NA	NA	NA
WP_038753789.1\|426914_427733_-	hypothetical protein	NA	NA	NA	NA
427019:427036	attL	NA	NA	NA	NA
WP_038761642.1\|427729_429013_-\|integrase	integrase family protein	NA	NA	NA	NA
WP_173426803.1\|429293_430190_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_038761645.1\|431068_433912_+	DUF1929 domain-containing protein	NA	NA	NA	NA
431497:431514	attR	NA	NA	NA	NA
WP_004522984.1\|433924_434533_+	SCO family protein	NA	NA	NA	NA
WP_038761646.1\|434896_435730_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_004522986.1\|435726_436029_-	AzlD family protein	NA	NA	NA	NA
WP_004522987.1\|436025_436754_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_004522988.1\|436878_437337_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_009972750.1\|437574_437871_+	lipoprotein	NA	NA	NA	NA
WP_038761647.1\|437917_440035_+\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA
WP_004537794.1\|440175_440586_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_004522993.1\|440614_441244_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_009962777.1\|441393_441831_+	VOC family protein	NA	NA	NA	NA
WP_028358864.1\|441835_442777_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA
WP_004522997.1\|442862_443798_+	hydroxymethylglutaryl-CoA lyase	A0A1V0SKU2	Klosneuvirus	4.1e-38	32.4
WP_004522998.1\|443853_444360_+	YbaK/EbsC family protein	NA	NA	NA	NA
WP_004535937.1\|444356_444689_+	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_004525642.1\|444817_446038_+\|transposase	ISL3-like element ISBma1 family transposase	A9YX10	Burkholderia_phage	2.7e-239	99.8

DBSCAN-SWA_2

882122 : 893639

Burkholderia_virus(22.22%)

integrase

attL 884700:884715|attR 903077:903092

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038761786.1\|882122_885194_-	N-6 DNA methylase	Q8V6N5	Halorubrum_phage	1.8e-05	27.0
884700:884715	attL	NA	NA	NA	NA
WP_038761785.1\|885186_885693_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_038761784.1\|886026_886428_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_076804979.1\|886552_886732_-	hypothetical protein	NA	NA	NA	NA
WP_004553012.1\|886903_887491_+\|integrase	site-specific integrase	A0A0S2SYQ7	Pseudomonas_phage	9.1e-44	50.0
WP_024430280.1\|887870_888188_+	helix-turn-helix transcriptional regulator	A0A088CD40	Shigella_phage	3.7e-15	57.0
WP_038761783.1\|888187_889105_+	DUF4935 domain-containing protein	A4PE40	Ralstonia_virus	1.2e-45	40.2
WP_045141125.1\|889358_889901_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	1.4e-46	55.2
WP_009974475.1\|890158_890611_+	VRR-NUC domain-containing protein	Q8W6S1	Burkholderia_virus	3.1e-31	58.8
WP_004525722.1\|890610_891690_+	DUF3396 domain-containing protein	A9YX32	Burkholderia_phage	2.2e-160	99.0
WP_004525721.1\|891846_892095_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	4.0e-41	97.6
WP_024428549.1\|892994_893639_+	lytic polysaccharide monooxygenase	A0A0K1Y848	Apis_mellifera_filamentous_virus	3.4e-07	30.5
903077:903092	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1079303 : 1135367

Burkholderia_virus(23.08%)

plate,protease,portal,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004196743.1\|1079303_1080017_+\|transposase	transposase	NA	NA	NA	NA
WP_038760791.1\|1080307_1085011_+	glutamate synthase subunit alpha	NA	NA	NA	NA
WP_004527896.1\|1085104_1086571_+	glutamate synthase subunit beta	NA	NA	NA	NA
WP_038760789.1\|1086851_1088363_+	alanine:cation symporter family protein	NA	NA	NA	NA
WP_009974327.1\|1088359_1088920_+	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA
WP_080298459.1\|1088957_1089146_-	hypothetical protein	NA	NA	NA	NA
WP_017881315.1\|1089135_1090902_-	ABC transporter ATP-binding protein/permease	NA	NA	NA	NA
WP_004521927.1\|1091504_1092638_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_038760787.1\|1092686_1092884_+	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_004199935.1\|1092936_1093752_+	thiazole synthase	NA	NA	NA	NA
WP_080298460.1\|1093748_1094852_+	thiamine phosphate synthase	NA	NA	NA	NA
WP_004199931.1\|1094951_1095770_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.4e-20	29.4
WP_004199929.1\|1095766_1096534_+	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA
WP_004199927.1\|1096546_1097107_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_004521932.1\|1097154_1098114_+	VacJ family lipoprotein	NA	NA	NA	NA
WP_004521933.1\|1098228_1098861_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004199923.1\|1098857_1099127_+	STAS domain-containing protein	NA	NA	NA	NA
WP_004521934.1\|1099422_1100349_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.0e-21	29.7
WP_004199919.1\|1100345_1101101_+	ABC transporter permease	NA	NA	NA	NA
WP_009932072.1\|1101186_1101426_+	BolA family transcriptional regulator	NA	NA	NA	NA
WP_004527889.1\|1101439_1102789_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_004199915.1\|1102785_1103442_+	ATP phosphoribosyltransferase	NA	NA	NA	NA
WP_004185201.1\|1103483_1104821_+	histidinol dehydrogenase	NA	NA	NA	NA
WP_004199913.1\|1104975_1106046_+	histidinol-phosphate transaminase	A0A1X7BZP2	Faustovirus	2.1e-14	26.6
WP_004199911.1\|1106109_1106697_+	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_004199909.1\|1106752_1107373_+	YchE family NAAT transporter	NA	NA	NA	NA
WP_004199907.1\|1107369_1108011_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_004199906.1\|1108178_1108934_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_004550994.1\|1109016_1109790_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_004201279.1\|1109789_1110203_+	phosphoribosyl-AMP cyclohydrolase	NA	NA	NA	NA
WP_004202813.1\|1110199_1110568_+	phosphoribosyl-ATP diphosphatase	NA	NA	NA	NA
WP_004202812.1\|1110620_1111010_+	hypothetical protein	NA	NA	NA	NA
WP_004185206.1\|1111038_1111404_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_004199902.1\|1111492_1111726_+	Sec-independent protein translocase subunit TatA	NA	NA	NA	NA
WP_004531855.1\|1111752_1112280_+	Sec-independent protein translocase subunit TatB	NA	NA	NA	NA
WP_004199900.1\|1112318_1113101_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	8.7e-26	29.7
WP_004521939.1\|1113445_1114654_-	Do family serine endopeptidase	A0A1B1IRD3	uncultured_Mediterranean_phage	8.5e-12	31.9
WP_004202811.1\|1114675_1115422_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_004204996.1\|1115642_1116263_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA
WP_004199894.1\|1116263_1117646_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA
WP_004521940.1\|1117668_1118427_+	cytochrome c1	NA	NA	NA	NA
WP_004185176.1\|1118519_1119131_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA
WP_004527881.1\|1119200_1119722_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.9e-21	51.0
WP_038724553.1\|1120435_1121491_+\|portal	phage portal protein	A4JWQ2	Burkholderia_virus	2.0e-206	99.7
WP_004202809.1\|1121534_1121891_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	3.9e-42	100.0
WP_004199884.1\|1121893_1122190_-	type II toxin-antitoxin system RelE/ParE family toxin	A4JWV2	Burkholderia_virus	2.8e-49	98.0
WP_004552667.1\|1122857_1124114_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	3.6e-21	26.2
WP_031313497.1\|1124116_1124734_+	DUF4276 family protein	NA	NA	NA	NA
WP_038759954.1\|1125506_1125833_+\|plate	baseplate assembly protein	K4NZR5	Burkholderia_phage	1.0e-49	95.3
WP_076926800.1\|1126321_1126738_+	DNA methylase	K4NZW3	Burkholderia_phage	4.6e-58	84.7
WP_111952238.1\|1127130_1127721_+	hypothetical protein	NA	NA	NA	NA
WP_009922432.1\|1127824_1128190_-	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	1.1e-52	89.3
WP_004521948.1\|1128291_1129077_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004521949.1\|1129073_1130420_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004521950.1\|1130528_1131143_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004531875.1\|1131517_1132189_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_004521952.1\|1132225_1132744_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004521953.1\|1132760_1134251_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004527837.1\|1134323_1134827_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004204912.1\|1134884_1135367_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_4

1486991 : 1496228

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004194034.1\|1486991_1488944_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	2.7e-148	49.2
WP_004522147.1\|1489210_1490341_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	1.7e-22	27.6
WP_038761152.1\|1490374_1492381_+	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	1.1e-51	34.3
WP_004194137.1\|1492556_1493372_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	8.8e-37	33.3
WP_004532195.1\|1493436_1494120_-	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	2.0e-05	26.0
WP_004194373.1\|1494116_1494644_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_038761154.1\|1494680_1496228_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	4.3e-24	31.2

DBSCAN-SWA_5

1836576 : 1845424

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004522358.1\|1836576_1837977_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.9e-79	38.5
WP_009921652.1\|1838008_1838932_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.3e-15	27.1
WP_004190173.1\|1838990_1839983_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	9.1e-28	30.9
WP_004189725.1\|1840054_1840372_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_004532363.1\|1840698_1841601_+	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	1.9e-53	39.9
WP_038759720.1\|1841827_1843141_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_004188957.1\|1843319_1844243_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	8.4e-44	36.5
WP_038759721.1\|1844581_1845424_-	alpha/beta hydrolase	Q6TUZ7	Yaba_monkey_tumor_virus	4.4e-15	29.5

DBSCAN-SWA_6

2357582 : 2365765

Burkholderia_virus(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004196630.1\|2357582_2357846_+	hypothetical protein	Q8W6S4	Burkholderia_virus	2.2e-26	85.5
WP_011205127.1\|2358030_2358753_-	immunity 52 family protein	A4PE26	Ralstonia_virus	1.4e-30	39.9
WP_080297085.1\|2358759_2359362_-	hypothetical protein	NA	NA	NA	NA
WP_004552779.1\|2359703_2360210_-	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	8.7e-19	39.4
WP_038754499.1\|2360206_2360632_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	3.8e-15	49.4
WP_038754502.1\|2360912_2361308_-	hypothetical protein	NA	NA	NA	NA
WP_076838840.1\|2361558_2361786_+	hypothetical protein	Q8W6S4	Burkholderia_virus	1.1e-21	74.2
WP_004527234.1\|2361821_2362055_-	immunity 52 family protein	A4PE26	Ralstonia_virus	4.3e-13	60.6
WP_004550288.1\|2362130_2362592_-	avidin	NA	NA	NA	NA
WP_004193710.1\|2363528_2363711_+	hypothetical protein	NA	NA	NA	NA
WP_009980362.1\|2363837_2364461_-	phospholipase D family protein	NA	NA	NA	NA
WP_004554310.1\|2364655_2365765_-	class II histone deacetylase	A0A2K9L2T7	Tupanvirus	1.2e-36	31.3

DBSCAN-SWA_7

3125055 : 3191253

Klosneuvirus(14.29%)

plate,coat,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004204967.1\|3125055_3127680_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	5.5e-80	39.2
WP_173426816.1\|3127998_3128211_+	hypothetical protein	NA	NA	NA	NA
WP_004531186.1\|3128312_3129533_+	CoA transferase	NA	NA	NA	NA
WP_011205452.1\|3129706_3131170_-\|transposase	IS1182-like element ISBma2 family transposase	A0A1X9I5T2	Streptococcus_phage	6.8e-80	38.6
WP_004196731.1\|3131456_3131696_-	hypothetical protein	NA	NA	NA	NA
WP_004193654.1\|3131945_3133655_+\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	8.8e-188	57.5
WP_038760429.1\|3133998_3134481_-	NUDIX hydrolase	A0A2I6PFL2	Proteus_phage	1.7e-19	41.3
WP_038760426.1\|3134499_3134886_-	hypothetical protein	NA	NA	NA	NA
WP_038734565.1\|3135173_3137273_-	glycoside hydrolase family 3 protein	NA	NA	NA	NA
WP_004545120.1\|3137374_3138235_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_038760424.1\|3138278_3139721_-	cytochrome-c peroxidase	NA	NA	NA	NA
WP_004193177.1\|3139954_3141538_+	acid phosphatase	NA	NA	NA	NA
WP_004521731.1\|3141735_3142929_+	trans-2-enoyl-CoA reductase family protein	NA	NA	NA	NA
WP_004526790.1\|3143551_3144739_+	HlyD family secretion protein	NA	NA	NA	NA
WP_004521735.1\|3144920_3146540_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_038760423.1\|3146541_3148242_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_004192810.1\|3148545_3149178_-	response regulator transcription factor	NA	NA	NA	NA
WP_038760420.1\|3149178_3151260_-	response regulator	A0A1V0SGR3	Hokovirus	1.7e-12	26.8
WP_004196717.1\|3151670_3152636_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_038760417.1\|3152651_3155063_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_024430383.1\|3155107_3155947_-	molecular chaperone	NA	NA	NA	NA
WP_004526783.1\|3155964_3156489_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_004526782.1\|3156565_3157126_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_004526781.1\|3157178_3157724_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_004531175.1\|3157981_3158203_-	hypothetical protein	NA	NA	NA	NA
WP_004196705.1\|3158540_3159434_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004552604.1\|3159877_3161137_+	MFS transporter	NA	NA	NA	NA
WP_038760415.1\|3161181_3162165_+	amidohydrolase family protein	NA	NA	NA	NA
WP_004193855.1\|3162632_3162914_+	H-NS histone family protein	NA	NA	NA	NA
WP_009927991.1\|3163176_3163449_-	hypothetical protein	NA	NA	NA	NA
WP_004521752.1\|3164341_3165655_-	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_038760436.1\|3165914_3166835_-	hypothetical protein	NA	NA	NA	NA
WP_038760413.1\|3166952_3169796_-	hypothetical protein	NA	NA	NA	NA
WP_004526759.1\|3169792_3170668_-	hypothetical protein	NA	NA	NA	NA
WP_038760411.1\|3170669_3173510_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.4e-20	25.9
WP_004521762.1\|3173522_3173828_-	hypothetical protein	NA	NA	NA	NA
WP_038760434.1\|3173845_3174088_-	hypothetical protein	NA	NA	NA	NA
WP_038746324.1\|3174319_3174859_-	hypothetical protein	NA	NA	NA	NA
WP_024431418.1\|3175644_3178980_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_038760408.1\|3179088_3181503_-	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_038760406.1\|3181499_3182093_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_076841699.1\|3182215_3182815_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_038724322.1\|3182811_3183369_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_012730392.1\|3183505_3184339_-	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_038760404.1\|3184341_3187149_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	5.7e-27	25.0
WP_076830677.1\|3187182_3187410_+	hypothetical protein	NA	NA	NA	NA
WP_004193592.1\|3187669_3187936_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_038731652.1\|3187959_3189375_+	hypothetical protein	NA	NA	NA	NA
WP_004542513.1\|3189402_3191253_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_8

3800734 : 3811691

Agrobacterium_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004196461.1\|3800734_3803035_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	42.1
WP_004194131.1\|3803031_3803346_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	4.4e-13	44.6
WP_004196460.1\|3803878_3804082_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_011851202.1\|3804211_3805822_-	multicopper oxidase family protein	NA	NA	NA	NA
WP_009929279.1\|3805834_3806017_+	hypothetical protein	NA	NA	NA	NA
WP_004189552.1\|3805989_3807249_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	5.2e-12	63.0
WP_004189780.1\|3807515_3808094_+	pseudouridine synthase	NA	NA	NA	NA
WP_071810810.1\|3808356_3808575_+	hypothetical protein	NA	NA	NA	NA
WP_004185496.1\|3808766_3809276_+	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	5.5e-13	41.2
WP_004197486.1\|3809576_3811691_+	elongation factor G	E4ZFJ7	Streptococcus_phage	5.8e-56	26.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009164

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009164_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009164_1

1000472-1000600

Orphan

Consensus_repeat	Method
TCGGTGTGTTCGACCGGCAAGTGTGATCGACGAATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009164_1

>merge|NZ_CP009164|1|1000472-1000600|CRISPRCasFinder
TCGGTGTGTTCGACCGGCGAGTTCGATCGGTGTGTTCGACCGGCAAGTGTGATCGACGAATTTGAGCGGCGAGTTCGATCGGCATGTTCGGTCGGTGTGTTCGACCGACAAGTGTGATCGACGAATTTG

>NZ_CP009164|1|1|1000472-1000600|CRISPRCasFinder
TCGGTGTGTTCGACCGGCGAGTTCGATCGGTGTGTTCG	ACCGGCAAGTGTGATCGACGAATTTGAGCGGCGAGTTCGATCGGCATGTTCGG
TCGGTGTGTTCGACCGACAAGTGTGATCGACGAATTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009164.1\|WP_004528266.1\|997260_998919_+\|tryptophan-7-halogenase	unknown	unknown	gnl\|CDD\|223717
NZ_CP009164.1\|WP_044583941.1\|946163_959822_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|238429
NZ_CP009164.1\|WP_011853119.1\|939333_940104_-\|enoyl-CoA-hydratase/isomerase	unknown	unknown	gnl\|CDD\|235938
NZ_CP009164.1\|WP_004198258.1\|941468_941702_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009164.1\|WP_024429523.1\|942753_943938_-\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|272922
NZ_CP009164.1\|WP_004524093.1\|940097_941357_-\|hydroxymethylglutaryl-CoA-synthase-family-protein	unknown	unknown	gnl\|CDD\|225959
NZ_CP009164.1\|WP_004528269.1\|1003571_1004765_-\|HPP-family-protein	unknown	unknown	gnl\|CDD\|225979
NZ_CP009164.1\|WP_038746446.1\|944323_945556_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|215608
NZ_CP009164.1\|WP_004524107.1\|1008564_1009236_+\|NAAT-family-transporter	unknown	unknown	gnl\|CDD\|236814
NZ_CP009164.1\|WP_004199325.1\|1010670_1011375_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP009164.1\|WP_004524104.1\|1003018_1003432_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NZ_CP009164.1\|WP_038759988.1\|1009586_1010459_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP009164.1\|WP_044583942.1\|977362_992569_+\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|237108
NZ_CP009164.1\|WP_004524106.1\|1006634_1007720_-\|ionic-transporter-y4hA	unknown	unknown	gnl\|CDD\|223464
NZ_CP009164.1\|WP_004524102.1\|999001_1000444_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP009164.1\|WP_004198340.1\|1005110_1006082_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP009164.1\|WP_004199294.1\|1013426_1013948_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|237123
NZ_CP009164.1\|WP_004553368.1\|1011550_1012546_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP009164.1\|WP_038759990.1\|992552_997178_+\|DUF2156-domain-containing-protein	unknown	unknown	gnl\|CDD\|238429
NZ_CP009164.1\|WP_004202607.1\|1013267_1013411_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009164.1\|WP_004528266.1\|997260_998919_+\|tryptophan-7-halogenase	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	2.67899e-19
NZ_CP009164.1\|WP_044583941.1\|946163_959822_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|238429	cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.	0
NZ_CP009164.1\|WP_011853119.1\|939333_940104_-\|enoyl-CoA-hydratase/isomerase	gnl\|CDD\|235938	PRK07112, PRK07112, enoyl-CoA hydratase/isomerase.	1.58721e-166
NZ_CP009164.1\|WP_024429523.1\|942753_943938_-\|ACP-S-malonyltransferase	gnl\|CDD\|272922	TIGR00128, Malonyl_CoA-acyl_carrier_protein_transacylase, malonyl CoA-acyl carrier protein transacylase. This enzyme of fatty acid biosynthesis transfers the malonyl moeity from coenzyme A to acyl-carrier protein. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension. [Fatty acid and phospholipid metabolism, Biosynthesis].	5.11233e-103
NZ_CP009164.1\|WP_004524093.1\|940097_941357_-\|hydroxymethylglutaryl-CoA-synthase-family-protein	gnl\|CDD\|225959	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism].	7.60605e-102
NZ_CP009164.1\|WP_004528269.1\|1003571_1004765_-\|HPP-family-protein	gnl\|CDD\|225979	COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms].	3.20469e-133
NZ_CP009164.1\|WP_038746446.1\|944323_945556_-\|cation:proton-antiporter	gnl\|CDD\|215608	PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional.	8.52602e-42
NZ_CP009164.1\|WP_004524107.1\|1008564_1009236_+\|NAAT-family-transporter	gnl\|CDD\|236814	PRK10995, PRK10995, MarC family NAAT transporter.	1.75722e-32
NZ_CP009164.1\|WP_004199325.1\|1010670_1011375_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.01161e-87
NZ_CP009164.1\|WP_004524104.1\|1003018_1003432_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	2.14376e-10
NZ_CP009164.1\|WP_038759988.1\|1009586_1010459_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	4.70131e-08
NZ_CP009164.1\|WP_044583942.1\|977362_992569_+\|non-ribosomal-peptide-synthetase	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
NZ_CP009164.1\|WP_004524106.1\|1006634_1007720_-\|ionic-transporter-y4hA	gnl\|CDD\|223464	COG0387, ChaA, Ca2+/H+ antiporter [Inorganic ion transport and metabolism].	2.6957e-73
NZ_CP009164.1\|WP_004524102.1\|999001_1000444_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.85881e-61
NZ_CP009164.1\|WP_004198340.1\|1005110_1006082_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.78138e-66
NZ_CP009164.1\|WP_004199294.1\|1013426_1013948_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|237123	PRK12511, PRK12511, RNA polymerase sigma factor; Provisional.	2.21088e-40
NZ_CP009164.1\|WP_004553368.1\|1011550_1012546_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	5.68078e-24
NZ_CP009164.1\|WP_038759990.1\|992552_997178_+\|DUF2156-domain-containing-protein	gnl\|CDD\|238429	cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.	4.22817e-157

>NZ_CP009164.1|WP_004524102.1|999001_1000444_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MTSEISGKRRWYALVVLCLGVLMIVLDTTIVNVALPSIAAELRFSENALVWVVNAYMLTFGGCLLLGGRLGDLYGHRRLFLAGVTVFTAASLACGLAQTQLVLIAARAAQGIGGAVVSSVALSLIMTLFVEPGDRAKAMGVYGFVYAGGGSLGVLLGGLLTSALSWHWVFLVNLPLGAVVYLLSSALLPKARAQATRAPLDIAGAVTVTAALMLAVYAVVNGNAAGWLSARTLSWLGGAAALFAAFVAIEARVAHPLMPLALCMKRNVAIANLIGILWAAAMFAWFFLAALYLQRVLGYGPLQIGLAFLPANLIMGVFSLIVSALLVVRFGIRVPIAAGLLAAAAGLMLFARAPVGGDFVADVLPGMILLGTGAGIAFNPVLLAAMSGVDPADSGLASGIVNTSFMMGGALGLAVLASVATARTDALLAARTAVPAAMAGGYHAAFMLGAAFAIVAALIGMRLRAAPNPAAMQGLQGATQ
>NZ_CP009164.1|WP_004528266.1|997260_998919_+|tryptophan-7-halogenase
MSNNQVRKYDVVIIGTGIGGTTLGAILARHGLRVAMIDSGTHPRFAVGESTIATTTLTLELMAMRFDVPELKHITSIAEVSENVMPSCGVKRNFGFVYHREHTEQNPQEVNQALVVNEVHYFRQDIDAYMLHVAIRYGCDAYQNTVVDDIRIDAGGVTVTTRGGLTFEADFVADGAGYRSVLADKLGLRETPCRAKTHARGLFTHMIDVKPFDACREVPKALQQPVPWHQGTLHHLFDGGWMWVIPFNNTPESKNPLVSVGLMLDPRKHPKPDVRPEQEFADFIAKHPDMARQFADARAVREWVSSGRIQYSASACTGDRFCLLSHATGFIDPLFSRGLFNTMQTTNALAGLLIEAAKDRDFSKARFAPVEKLQQGLIDFNDRLVNCSYLSWGHYPLWNAWFRLWLLTGNYGQLHLQRVMMKYRQTGDARWLEPADALLPGAFTTLEPIMRLFEEAAVCVERYGAGELSGEAAERAIYALLEENAALLPPFFDFVSPAERITWPSTPEKIAALLLEWVERLPEDVRAEYFDYDVRALLQQPVVKDTITADVA
>NZ_CP009164.1|WP_038759990.1|992552_997178_+|DUF2156-domain-containing-protein
MQATFDPDEVALAGDARRTDGDADRAAASPHGFRFVEKARIADEPGLSARLAARKGDAHQDGVFLDLWPSIFLSDEHGDHIHVLRDRGLLFVTRFVGAPQREAALLSALLDRARGEGRALCYLDMSNRRKPDIERECGLLSTPLGVVQTIDDIRRFTLDGPRMRKLRYLVSKFGRDPSCRVVEYTEPDPAVDGEIRAVMAAWSREKGVVNKVDAILADMRVGNLLKRYRVYLTYLGDRLQNVVVLSHIGDGYITDQEYFVPDMPLGGTEYAYATIIERLAAEGHRKFSLGLTWGLFEPEAGFSDAEGWALVNRTEGQLAQIFRRGVQNHQYKNKYCPAEYPLYLYRSADSRPQIIKQCMGQFFRNGVPYDEIARQIEADDARALAAAGAAPPRATHGGDEAEARSAPGGAPDDASFDAPDGAPIEVSDHAPVSTPPPRAARDERGGERDDGKGGQAGQADRSGKHDPADAHGRAASGTPDAARAPAPADIPDAFFDATQADPNAIRLDLVSDSWAHLGYPFIRERARRLLAGLASPHADPAAPCGLFGVDHCVLTTSGRNAERVFFNLFPAKRKTILQNIPFFSTRHNAAKAGFASVEIPDPRIFDPDCREIFRGGIDFARLREQLEARPDGIAMVLIELCNNASGGYPVPLAQIADVSALCRARGVPFVMDVTRIVRNAELIRRHEPGCANVGLWDTVARIVAHADVVFGSLCKDFGVSAGGIVAANDGRLIGKARRYAEIEGALLDHVQTQVVCASLGERDALERGVAAQLDVARRVSDALDARRIPALLPVVGHCALVRAADMPGYAGRRYPRESLLRALLERHGVRAGIHLAGSGAERVIDRCIRIALPIGLDDARLASGLADALAGTAPGATDAPAALPDLLHARAPGAADTADTVDTADTADTAAQAGVRRGEAHASRAPMRASDDDAIAIVGMAGRYPGADDLSAFWRNLVDGVNAITEIPAERWDWRAHYHPDPEQAARLRKSYGKWGGFLGEFDCFDPLFFWMAPRRIAMIDPQERLFLEECWKALEDAGYPPSRLGDALRERTGVFGGLSKHGFSLYASQYAGTQPHTSPASMVGRVSHFFDLKGPSVAIDNHCASSLVAVHEACEYLRRGDGDLAIAGGVSLCLHPSSYVQLSLVRMLSRDAHCAAFDEGGAGYVPGEGVGVVVLKRLAQARAHGDPIHAVIRSGAVNHNGRMRYYGQPDQAGQQAAIRAALARARIDPRSISYIEAAASGVETTDAVEMAALTEVFGDRAGAAGAYTIGTVKPAIGHGEAASGMSQLMRVALSLKHATLTPTRLPRRPSPLIDFDRLPFRLAAEAAPWAPVSVDGRPVPRRAGVTAIGNGVNAHLVLEEWPGAPADDSAAAPREPQVFVLSAQDGERLAAYVERWIAFLASGATPDFGRMLRTLQIAREPMPARFALVASDRDDLLRALRAWRDGGGASSRVHRGDARRRAGQAALAEQACDPRACAPDEAAAAWVQGRTVRWEALHRGGPWRRVGGLPAYPFARERYRIADAASGAPAGREEASARPD
>NZ_CP009164.1|WP_044583942.1|977362_992569_+|non-ribosomal-peptide-synthetase
MNAIISDVIRAYREGKLTTADLASELRRGAGDGAGLPLSEGQRGIWALHALHEDRGAYNVPLCFAVRDLRADAFRRALRFVARQYPSLCAAIRVIDGEPRRVQPAGATLEPIEATLADTLGPDADEAAILAWLREQARQPFSLEDGPLCRVHLLDLAGWRARDAAAASRFGAAHTIVSLHVHHLVLDGQSLLLLIGTLLDAYRALVDGVEPAPRAPAATHDDFVAEERALLDSDEGARRIAYWRRQLDALPPALELPASAPAAAERAAGDAWHAVPLDAARSARVAAFVRSNHLGAAAFFLGMFKLLLHRYTGEPDIVVGMPADARPSQRYRDALGFFVNMLPLRTRLAGETAVVAMLERVQRELVDAMAMQYPFGALVRELGLQGAEDGAPMYRIAFMYQDFLARLRFGDDVEPIGEIRQAGEYELVLEVIEGAAPGGPARFALNWKYDGARYRAAAVEAMARHYLTLLDGVLAAPAARVADCPMLPAAERERLLALGRGPRADHARERRVHDLIDARAQQAPHAIAVSCGGRSLDYARLKADSDALAQRLRACGIGAGDFVAVRLDRSTALVVGLLAVLKAGAAYVPLDPDYPDDWAAQMLGDCRPAAILTRAALAAGAHALARRVAADGPPAVIALDDAADADTHAADGARAAAIAAARQAAASRAHAARAADLAYVIYTSGSTGAPKGVMVTHRALTNFLASMARRPGLHARDTLLAVTTYCFDIAALELFLPLVQGAHCVICDSASARDGGRLRELIDAARPTVMQATPSTWEMLLHAGWRNARRMRVLCGGDTLPDAVKARLLEDGGEVWNLYGPTETTIWSMVAPVTAERPTSIGAPIDNTRIRIVDAYGNPVPIGVPGELCIAGDGLAAGYLNRPDETAARFVDALPDVDGQARERHYRTGDLARWREDGEVEHLGRMDFQVKIRGHRVEVHDIERHLARHPAIRAAAVVARRHAGGDQLVAYYVRGDAAGHGGADDAPALAAELRGHLAGALPDYMIPALFLPIDALPMTHNGKLNRKALASRGIRLRVASSGERRAAPPRAPAAADIEARLLAICREVLKIDDIDRADGFFEVGGNSLSVALIASRVGAEFGLARLGAGAFFRYPTVAALAAHLGARLRGDAGAAEGADGADGADAGPAGADARASRPAQPRAAGPAARLPAALDDAIAIIGISCQFPGAQDHRAFWRNLRDGKSGARFYSEDELRAAGVPDTLIRDRHYVPMQQTIEGKDLFDRHFFRLTTKDAQLMDPQFRLLLQHAWKAIEDAGCTRERIADAGVYMSASNSYYQAMLRAAGTIDASDEYQAWLLAQGGTIPTRISYELGLTGPSLFIHSNCSSGLVSLSVAAKSLLQRESRCALVGAATVLPDADIGYVYQPGLNLSSDGRCRTFDENADGLTSGEGVAVLLVKRARDAIDDGDPIYALLRGIAVNNDGADKVGFYAPSVGGQADVIRKVLDATGIHPETIGYVEAHGTGTKLGDPVEVAALTDAYRRHTARTGFCAIGSVKPNIGHLDTVAGLSGCIKVALSLRHGEIAPSINYEKPNREIDFAHSPFYVVDRLTRWPAREPGAPRRAALSSFGIGGTNAHLILEAFERDEPPAGMRAPAARAARVIALSARTEERVRAQASQLLAFLEQEAGALPDFDGFAFTLQVGREAMRERVAFVADGYDALAAALARFLRGEPDAAACFTGARGGDSTLAALLDDPGDTGDTAAHGLIAAWCEQGKVAKIAALWAHGVNVDWRRLYGARAPVRVSLPTYPFAPERCEGVARRRAAAPAPRRAGVETAAARLHPLVHDDRSDGARRRFAATYSGEEFFLADHLIRGKRILPGVAYLEMARMAAVRAHGDGALSLHDVVWMTPIVVDGPCEVELSLEAAERAEAEGAAEAAAGVRTMRFNVTSGGGAGARRTNSQGTIRLAPGAAAPAAARVDVAALLARCTREIGAQRFYTFLDSGGGHYGPTFRSVAALHQGEREVLARLALPESVAHADAFVLHPSMMDAAFQIADSLILQPRANGGCLPFFVKELVVRRRPGRDAWVHVRLAGGDATLARYDIDLIDPDGTVCVSMREFSARAETAGGSGRPNTYRAAEWRAAERDGERDGNELSELNEGNELNEGNEGNEGNEGNERRRAAPRVAVLDASPRLAHALRGIGVDALWLPADAAHAARGPALRDLDAALHAGAARDLLVLADERRELDDDALRAWLDGAPHAGGARRALVSIAGLADADARAVADIVERERHGRAADVRYDAGGARSVRGFADAAVARWLLDTDALRSGGVYWIAGANGPLGASLACHLATVERATVVLTDAHAIDAARLACLDGYRAGGARLEFIEGDAARDGAALAQRIRARHGRIDGVLHCAQHASAPTLAALAALDRATRADALDCFVACEARDADPDHDPAAALVARFVERRHARVQAGLGGGRTVAIAAHAALPWPDDAPLLRAGGIASQPALAIVQALHHALRSDEAMLAVGWGASAGGVDAGASNASNASNASNASNASNASNASNASNASNASNASNTSNTSNTSNTSNTSNTSNTSNTSNAPSVAADLAAPAEPNARIPARARATPDTIAACLKAVIADVIRADVDEIDARQHFGEYGLDSLSLTSVSNRLNDAYRLDASPAGALNPTLFFEYPSVERMAAYLAEHHAARFADASAAPGADGAAECAPRPEAALNAEVEPGNGAAPAPEPEVGFRAGFEPVAPPMPRIEPAASTPPDQPVPQPGGAWHAGRGARPAADDDVAIIGISGRFPCARDVAEFGRNLFDGRDCIGEIPADRWDWRAYLGDPQHEAGKTNSKWGGFIDGIAEFDPLFFSLSPKEAYLLDPAHRLLLMHAWWAIEDAGYNPAALAGSRTALFAGIAQSGYADLRRQAGEGIEGNSFLGVVPSIALNRISHLLDLHGPSEPVETACSSSLVAMHRALVSLRCGDADMALVGGVQTILSPHAHIGFGKAGMLATDGRCKAFSSRADGFVRGEGIGMLFLKRLGDARRDGDAIYGVIRGSAVNHDGRSSSLTAPNPAAQRDVIVQAHMRAGVDPRSIGYIEAHGTGTKLGDPIEINALTQALDTLLRAQREEGAAYVPGACAIGSVKSNIGHLELAAGVSGVIKVLLQMANGRLAKSLHCDELNPYITLDGGPLRVVGANAAWPRPVDRDGREQPRRAGVSSFGIGGVNAHVVLEEYPEADARARDDGQPAAVPLSARDSQRLADYASALLAFVRERREAAAHAPPPRLSDLAYTLQVGREAMRERVGFVVTSLAQLEARLAAFVAGEPAGDGVYRGSVRPARGERAADADGLDRLVDIWLASRKHEALLGAWVKGAAIDWARLHAGGAPRRVHLPGYPFARERYWIAEPAPATGEPAPPRMPTQPHGPTSDGHAESRHPLRRDAADGRFLLDLDGDEAFLADHRVDGRRVLPGVAHLEIAYEAARRTFGPADAIRIRNLGWIRPIVADGALRIGVELSVTGAAEGAFRLYTTDPQHGRLTHSEGAIGRADVAQSARALDLGALRDAFATAERVDPAVWYDGFSRAGIDYGPSHRCLETCAVGPAGVLARVRLPAAEARAARPFTLHPGLMDAVLQAAIGLRKRAGGAPRGTPYLPFALDTVEILGGCGEAAWAWLRPSPRDAADASASRGDAGKPAAERIDIDVCDDAGRISVRLRGLTSRPLARRTAPAPEAGNPAGEVGEVADATDADAAEVREISNVSDVSNVSDVSDVSDVSDVSEVAPLADGDVGLLARTAVWSALTPAQWLADPASRPRAGARVFVLGGTAAQRREIARIHPGCEPLEANAADDGGDGADQQAHVDALRRRLAEGAPIDQLVWIAPPEPAADARAGLRGDAIVAAQEHGVLQLFRIVKLLLAAGYGGKPLDWTIVTRETHATSGIDEPSPTHAGVHGFVGSMAKEYRNWRVRLLDMPAREAWPIDAMFSTRFDPRGDALAYRRGRWLARELAAIDALPDGGCHVKAGGVYVVIGGAGGIGEVWSRWMMERYQARIVWIGRRDEDEQIRRKRERLARYGTPPVYLRADASERASLAAARERIAALRWDGRALPTSGVVHSAIVLADASLATMDEARFLAAWRSKADVSVRVAEVFGGDPLDFMLFFSSITSFGKTAGQANYAAGCAFKDAFAAHLGRTLPYPVKVMNWGYWGSVGVVSDETYRRRMASAGFGSIEPDVGMSALERLLASRVGQIAVLKTLRPNLVGDSRADRIRHYPGRDWPDAAPAPATAALQAALAARAGRWHAQASALALGNPELETLIARGLLAGVLPYLDAPGSVDARHARWFDESRAMLHGFGYLARDGAGDAPSWSLTDAGRAAAPHVWQDWERHALAWHDDERRVPMRLAHVCLRALPELLGGKRRATDVMFPGSSMALVEGLYKSNRKADLFNDVVHDAVLSYARALGRALDIVEVGAGTGGTTDGLLRKLVEQGIAVREYRYTDLSHAFLLHAREHYAPRAPFLTTGIFDVDKPIAAQRVPGGRYDVAVATNVLHATRDVRRALRNVKATLRAGGLLILNELSVKSLFSHVTFGLLDGWWMYEDADLRIPGSPGIDSSTWRRVLAEEGFEYVFFPAQGLHAHGQQVIVAQSDGVVRQPRAAAAPGGGAAASPSGGTQAAVPARRAAAASGAPRVEAIPPAAVAPAAFDAATAAPPGTAAAAATAVPADGRSALAHASSPAASPPQPGDAPAPERMHAYLRDKLSQVLKLPPERIEPDASFASYGVDSIMAMALIAALEKELGSLPKTLFFEHETIEELGAYLLERCEPMPSGVEPATVGADDRAAYSGARPHAWPASPTEPDEPTEPTASPASSALPAASPPQPGDAPAPERMHAYLRDKLSQVLKLPPERIETDASFASYGVDSIMAMALITALEKELGSLPKTLFFEHETIEELGAYLLERCEPMPSGVEPATVGADDRAAYSGARPHAWPASPTEPTEPTASPVSSASPAASPPQPGDAHAPERMHAYLRDKLSQVLKLPPERIETDASFASYGVDSIMAMALITALEKELGSLPKTLFFEHESIEELGEYLLERQGQERACHASNV
>NZ_CP009164.1|WP_044583941.1|946163_959822_+|SDR-family-NAD(P)-dependent-oxidoreductase
MNGLKERVGSGYVAIPILVALRGARAPGAAGDRDAAWTERIAAAARLDADGAAALREWLNDAAPAAGADDARLARGDAIPTDILEPYRFEPDARAFFDDAFRECLNRWSRRLLEQDGATWLSDVVLVPFLVAAARARESAPSCEARSIRALADAFGADLRRLLDASRVLDASRVLDDGDSGAMRASLECVTSFRDGLLHADRRLSNGAPAACRPQVCAAAYEDLEAAILRRFDASANARAGRRPRYLAFVGGEDRDLQERLVERIVRQGEPRNGGGTGVEPPRIVIPRADAAPADDSAQPDPAAAFGVDAIDDVLPVCVLSGVDDAAAIRRLRALLVRGAHAAVVLACHGLPAASAALPDAWAAARPARMLRLLGFGAARDAQALLVDMAADGLFARTPPIGYPRASRARRATLGEFEARDYRVRPAAPHDLPALQALELACWPAALRMPEATLAARVGRHAAGQFVLELDARDAAAGPRRLAGVIYSQRIASVRALDGVDADTVDRLHEDGGPVIQLLAVNVDPACQSRRLGDQLLEFMLQRCAALADVESLVAVTLCRDFHKHASMPIDDYLRLRNAFGFLADPILRFHELHGARIERPMPGYRPRDARNAGFGVLVSYDLARRARNEAGAAAASDAPAAPDGAPARADGGHAGAAAPPRPERDAATPADPDALDAFIEAEIRRIVGGGAELAYARDLPLMQLGLDSVGLLELAEALALRCGVALPATFLFQHNTPARIVAYFDASRHAPPRAGCDTGCETAGAAAAAARPSSRGCPATEPGAAREPAQAAPFAPDGIAIVGIACRLPGGLDTPEAFWDALKAGACVVGELPGDRWTWPADIDPGARHRGIDRGGFLDDIRSFDAGLFRLSPKEVATMDPQQRILLELAWEAIERAGHCADAVAGSRTGVYVGASGSDYRLLLERAGTGVDAHVATGASMAVIANRISYTYDLRGPSIQVDTACSSSLVALHQAVQALRAGECDQALVGGVNVICHPGNTIAYYKAGMLSPQGRCKTLDDAADGYVRSEGAVMLMLRRLEQAVADGDPIHAVIRGSACNHGGLTGGLTVPHPDRQADLLRAAWAAARVSADDIGYLEMHGTGTRLGDPIEVRGLADAFGARDDAAARGTCGIGSVKSNLGHLEAAAGLAGVLKTVLALKHREVPATLHFSRLNAQISLARTPFAVVDTHRAWPARGGARRLAGVSSFGSGGANAHVVLEEYPSEAPPRAAAGDALFVLSAHSREQLAEYARRVLAYCERRLQSGDDAPAAAAVAHALQRRQAMAWRLAFVAASLEEAVRRLRAFAAGAAQPGTFVGGGVPKTSVADFVNQNPDVQQVVSAWLRERQLAKLARYWADGVRIANWSALYDARPACVPLPCYPFARERHWIAARPAEASEATAAAAPPAAPDDAYRAAPRLEAESRDAAGASFRVRLDGDASFLTDHRLRGRKILPGVVHFELAHAAWAALARADAPAIEFRDLAWTHPVDVATPERVLGVRLRRVAARPGAHAYEAYSPPDAAGGGERVHARGTVLDVAGPPEPALDLDALRARFDGEPGAHERDAHDCHRAFERMGFGYGPAHRGLRGLRWRGGARGATEVLAHIVLPDCIADARERHRLPPGLLDAAVQAAMAAAIGRDALGASPACVPFSLDRLVCAGPCPARAWVWARRRDGARAALAPVDLDVCDDHGRVWASFRGLTFRPSREAAGRDVAAPRLFRPRWAARPLSGERASAGAADVAHWLVLCGFDEGAALRRGLATLRARLPDTSIVAIDSEAATLESRFADSAGQLFELFRELALSGATPRAAVQVLVPADGPERAFAALSALVRGARLEHPSWSVQLLSLERATQAADAAARALENRGDDADFVRYRRACRESLVFEALPAGRDEPPRPWKEAGVYLITGGAGGLGLAFAKDIAAHVRRATIVLAGRAAAPDAALSASLGAIARPAGVDIRYRSVDVGDAPAVAALVGDLLREHGRLSGVIHAAGVTRDALLVRKPRAEFDAVLRPKVAGAAALYAATQDIDLDFLVSFSSIVGVTGNLGQTDYGAANAFLDALAGLRAQMGGERRARVLSIAWPLWRDGGMGREPEVAAHFERAFALAPMDTAAGIDAFHRALASDAAYVVVANGDADWTPERAIARALSARARPGAPEPAERAHGPAREAAAAACEAVAVSASASSLSPSPSSASASASASASASASVSVSAECAPADDGAARRHAVVAYLTRQIGAVLGHAPDSLDIDAPFTSYGMDSILALDTTRAIETDLGSLSKTLFFEHENVRQLSDYLLDEHADRLAACAWFAQAGEPARAAGPALAAGGEPTRETAAPSAAADTTAGIAIETSTETPTAATTQAGAAPEGRYRRIAKAALPADGQLAAAVAAIGGAAATKGVALFEIWPELFVDSAGHGYCHLLVDGGVLFAAQHAGDARHRAALFAALLAYCDRHGYAFGYLDLSEGRKPDLEAQCGLLAAPVGVVQIVETIASFSLAGGRMRRLRYMVERFRKAGACRVVEYRAPDPDVAREIRRVICAWSDAKKVVNNVDIVLGEMASGSLHERYRVFLTYLDDVLQNVIMIARDGDGYLMDQEYYVADMPLGGTEYAVTEILAALAAEGRERFSLGLTWGLFDTGEGSSDPAADAFLASTQTQLRRIFERGAANRQYKSKYGTRDHAVYLYRRPGKPEPAIVGCLSQFYRKGLTHHEVRRLAGLADAPVPVAAPATVPQVTPAPAPVATPTADERAYDVTRIDAATIRVDLVSDSWAHVDYPFMRARAATLDRHAPPARGGDPGRAVAALLGFAQCLLTTSGRAAEHLFFRARRSARTRVPQNLLFESTLHNLVKSGFEPVELPDARALDPDSRDLFRGGVDLAALDRELQAHADATAMVMLELCNNASGGYPVALAQIRAIAAACRRHGVPLVMDVTRIVKNAELIRRGEAGYAQRGLWEIVREIADHADAVVGSLCKDFGLGAGGLLAARDARVVANAAGIARLEGGLPGPAELRRIAAAFDDRAYLEREIGRQLDFARDLHIELERCAVPVVQPGAGHCVLVRVDQLAPPGGSAPSRGAYLRLLAERYGVRGGLHLVGNLRDSHLNACVRLALPLGFDDPRGPGALAAALAAARDGRDHALDDLMRAPRARAAHGGRCADGIAIIGLSGRYPDAPTLDAFWRNLVSGRRSISEIPAERWDWRDHYERDPDTAVAHGKSYGKWGGFLDGFSAFDPLFFQIAPREAEFIDPQERLFLEACWHALEDAGCPPSALTRAQRAKAGVFGGMTKQGFNLYGAGGAQPYQSTSLAALVNRVSHCFDFNGPAVAFDSHCASALVAIHEACQYLRREPEGIAIAGAVNLNLHPSNYQQLSKMQVLASGAESASFASGGLGYVPGEGVGAVVLKDYRRALEDGDPIYGVIRGSAVNQNGRMNRFGMPSQKQQEAVVRAALAQAGVDPRSITYVEASAHGSAVGDAIEMAALTRVFGARERADGRYRIGSVKPNIGHGEAVSGMSQLTKVLLSLRHGQLPPTLVCGAPNPDIDFDALPFELNTSLTDWARARVDSERVPRRAGITSTGASGLNAHLVLEEHAAPAVPAQAGPGEADARAHVFVLSARDRARLDDYARDWIAFLNDDPQRDLAAIAYTLQVGREPMACRLAVVAADCRDLAGKLARWREAAHADCDDVFHGEARAAAGKPHREAARDAREPRDVARAWVGGAVVDWAARHAGARPARVAGLPGYPFERRSYWPGAAAAPATARAAAASDASEAARALEAREAHEATRATRMTRAARESEARQAPEAPSMSEATEATEATEVAEVAEVAEAAEAAEATEVAEARDARPGAVADDAAARLEAAFLPRFIELVADVFRLPAGELDADRPLDEYGINSFLIKVLNVRFADIVGRVSSTLPFEYRTAGELARHFLTAHRDACAAWVAFDGAASPGAADASSAPPVPAASASAAPATPATPATGPTGEPSRASAGAQPGMSAGMPSGASSSIKQPGATWDEPIAIVGVSGRYPQARDLDAFWGNLMRGRDSITEIPPERWPLDGFYDEDRERAIGASRSYAKWGGFIDGFAEFDPQFFNLSPREASNMDPQERIFLQACWEALEDAAYTRARIAREHGGRLGVFAGITRAEFCLYGAGNLKQGKAPFTSFCSLVNRVSYFLDANGPSIPIDTMCSSSLVAVHEACDKLRLGECEVALAGGVNLSLHPYMYVSLSAQRMLSSDGRCKSFGLGGNGYVPGEGVGVIVLKPLSRALADGDRIHATIRATSINHGGKTNGYTVPNPIAQQNVIRSALDRAGVHARAVSYVEAHGTGTELGDPIEIAGLSGAFRRDTSDRGFCAIGSVKSNIGHLEAASGLAGLTKVLLQMKHGLLVPSLHASELNPNIDFPASPFVVNRETRAWERPVIDGREHPRIAGVSSFGAGGTNAHVILEEPPRQALPARAPTPAGAPALIVLSAKKPEQLRRYASELLARLRDADYRARVDADGLRSLAYTLQVGREAMDERLAVIADSVQALEGKLRQFVDGKTDIQDLHVSRVGRSAHHVI
>NZ_CP009164.1|WP_038746446.1|944323_945556_-|cation:proton-antiporter
MNSIFVFLSQALLIVAVPPLLMNYLRVGAVVPLVVVQIVFGVVIGPSGLGRLSPETYTALFPPDSLTFLSHVSAIALFFFAIVTGLHLDATGLRGHGRKLGFISTASMLAPMSLGVLAGIAISARYPQALDPHASVAEFVAGIGICCGVTALPVLAAILRETNLTSRRLGQFSLALAAVNDGMLWILLAAFLSVTGANAANGGRLFITSALIVLYFVSILFVVRPLLLALANRLRTSVDTQILIACAVAVASAAATDRLGLHYLLGAFIAGAIIPGAWRDALLERMQPVTVNVLTPFFFISTGLRVLIDVDAPGFLQITLIITLCTAIGKIAGTTLAARMTGESWGFCLGLGFLAQAKGLMELVVATILLDSHVISRTVFSALILMALISTAFAMPLLRLKPVRGAALSA
>NZ_CP009164.1|WP_024429523.1|942753_943938_-|ACP-S-malonyltransferase
MLNTFMFPGQGSQAKGMGGALFDRFADLTAQADAVLGYSIRALCVDDPRDELGRTQFTQPALYVVNALTYYAKCEDSGETPDFLAGHSLGEFNALLAAGCFDFETGLKLVARRAELMSQARDGAMAAIVNASREQIERTLDEHGLVDTAIANDNTPSQLVISGPAHEIARAEALFQHDRVRYLRLNTSGAFHSKFMRPAQQAFAAHLQSFRLADPAIPVISNVSARPYENGRVSEGLAQQIASPVRWCESIRYLLALAAERGEAIEFTELGHGDVLTRLVHTIRRQTPAPAAAPAAAATPARARPTPPGEPERLAQQTAAAPRASDSASASLGAAERVAAWNRDYPVGTRVRSSLIHDDVLETRTPATVLFGHRAAVYMKGYNGYFDLAEVTPA
>NZ_CP009164.1|WP_004198258.1|941468_941702_-|hypothetical-protein
MRREAAWRARPLIPNEPRGPASGRHFSLQEPVLTDDTAAAPPSAFYICAEFFSIIEHSVFYDFLPPHFRLATEKSMM
>NZ_CP009164.1|WP_004524093.1|940097_941357_-|hydroxymethylglutaryl-CoA-synthase-family-protein
MTAVGIEALNVYAGVASLDVSRLAEHRKLDMARFQNLLMREKSVALPYEDPITYGVNAAKPIVDALTPDERDRIEMLITCTESAFDFGKSMSTYFHHHLGLKRNCRLFEVKNACYSGVAGLQTAINFILAQVSPGAKALVIATDLSRFIVEEGGEALSADWSFAEPSSGAGAVAMLVSDTPHVFRIDVGANGYYGYEVMDTCRPTTDSEAGNSDLSLLSYLDCCENAFLEYQKRVCDVDYASTFGFLAFHTPFGGMVKGAHRNLMRKASRCSTQEIEQDFQRRAGPGLVYCQRLGNIMGATAMLSVASTIDNGEYRAPQRVGVFSYGSGCCSEFFSGIVDEEGQRRLRGMRIGEQLDRRYALSIDEYEHVLKESRVVRFGTRNAKIDDGFIPAARRAHGRETLFLSRINEYHREYEWIC
>NZ_CP009164.1|WP_011853119.1|939333_940104_-|enoyl-CoA-hydratase/isomerase
MLSRPADYRTIRVRYDGDICFLQLHRPDAQNAINNRMIAECMDVLDRCEHAAKIVVLQGLPDVFCFGADFSDIAEKPDALIDSDAIYGLWHRLATGPYITIAHVQGKVNAGGIGFVAASDIAICDENVPFSLSELLFGLIPACVLPFLARRIGTPKAHYMTLMTQPVTAQQAFSWGLVDAIGANTDALVRKHLLRLRCLNKASVARYKSYAATLDDTLAAARPGAVRVSIEMFADPENRRKIARYVDTGKFPWEAD
>NZ_CP009164.1|WP_004524104.1|1003018_1003432_-|MarR-family-transcriptional-regulator
MTKPARELRKTDFEQLSEFRYQMRRFERFSERAAQSEGITPLQYLLLLHIKGYPERDWATVGELAERLQAQHHGVVALVTRCEALGLVRRRPSDADRRQVEVHLQAAGERVLARLAELHRAELKSLRGAFQVPQIDY
>NZ_CP009164.1|WP_004528269.1|1003571_1004765_-|HPP-family-protein
MSSSLAFAHRLARGLVRWLWRFVPIPVTLSRRERVRSCAGALVGIGCVGVTMRALPGLPGDVPLLVAPMGASAVLLFAVPASPLAQPWSLIGGNLVAATVGVACAQWIADPVLAASVAIAGAIGAMFALRCVHPPSGAVALTAVVGGPAVHALGFRFVAEPIALQSAALLGAALVYHALTGHRYPHGGAARPHADSNAHAAAAPLHARFVRADLEAALKNRSEWLDVAPEDLESLLRETELRAYARTFDELSCAEIMSRRPISIAPDTPLPAAMTLLERHRIKALPVVDADARVVGIVTRADLSKAAPYATPGFLRNLSARLPRSLVGPAFVARAVMSTRVHTVRTTTPIAELVPLFADHGHHHIPVVDADHQLAGIVTQADLIAGLYRQSQVRLAA
>NZ_CP009164.1|WP_004198340.1|1005110_1006082_+|LysR-family-transcriptional-regulator
MDMLDNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGQRYFERAKSILAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPDVSVELTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGTPTTPDDLAKHVCLRLDTPASPGGEWRLERDDGDETVYALPPAPFQANVPDALSVAVRAGRGIGSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHLRTTLAPALENDLKELNRLNGGVGKKALREVA
>NZ_CP009164.1|WP_004524106.1|1006634_1007720_-|ionic-transporter-y4hA
MPISSSALPRWTLVAPLAAWLVLALSRVVPAEGFAIAFVAAALAGAVFSAVHHAEVVAHRVGEPFGTLVLAIAVTVIEVALIVSVMLSAGPEKAGLARDTVFAAVMIVCNGIVGLCLLVGGWRHGEQDFQGRGATKALAVLASLSVLSLVMPNYLSAAPGPRLSTSQLAFAGVSSLVLYGVFVFVQTVRHRDYFLIDGSADESVHAVPPSGRTALTSIAFLFVSLVAVVLLAKLLSPAVERTVLRLGAPEAAVGIVIAALVLLPEGLAAVGAARANRLQTSMNLALGSALASIGLTIPTVAAVFIWTGAPLTLGIGAMETVLLSLTLLVSTLTLSLGRTTVLHGVVHLSLFAAYLFLSITH
>NZ_CP009164.1|WP_004524107.1|1008564_1009236_+|NAAT-family-transporter
MIVDRLISEILFGFTGLMGIINPFGIAFLFLERTESLTEAQRAALARKVAINAFIVLLAAFFVGTPILHFFGISLEALRIGGGLAVAVAGWQMLNEPDVPTGGDTAAQPVEPRNAMARAFFPLTIPLTTGPGSIATAIALNANRTHKLSEFVLSSIVSVAVSALAALVIWQTYSRAAFLARYLGTEGTKVAMRVSAFLLLCVGVQIMLTGFSEFLQPIADQVK
>NZ_CP009164.1|WP_038759988.1|1009586_1010459_-|CPBP-family-intramembrane-metalloprotease
MSGNTFWLAAPWAALFVAALAAVWFPKLRAASVGLGALGYAGAFASGLIAPVALAPIALLAAAAYAVAPQRHAAVRVAGHAVFVALSLALMLHWLPGFHNPRVIGPVRFTPDAAPFTMYLNLDKPLVGFWLLWVLPWLRPIDDRARAWRAGIVAAAATSAVCLVFALGVGLVGWAPKWPESAWLWLANNLLFVCFAEEALFRGYLQGGLSRLLANRVPAAGTVALVAAALLFGAAHAAGGWQWVALATVAGVGYGLAYRAGGLQAAVLAHVGLNLAHFGLFTYPMLAVAR
>NZ_CP009164.1|WP_004199325.1|1010670_1011375_-|fumarylacetoacetate-hydrolase-family-protein
MTDYVFAPPAVPSVEIAGCAARFAVRRVFCVGRNYADHAREMGADPNREPPFFFTKPADAIVPASGTVPYPTLTSELHHEIELVIAIGRGGRAIAADAALDHVWGYGVGVDLTRRDLQAEAKKAGRPWDWAKGFDASGPVTALHPAASIGHPQRGRIWLAVNGALRQQGDLADMIWPIPDVIAYASRAVELRAGDLIFTGTPAGVAALQPGERVTGGVDGVASFEFVVGEKPAA
>NZ_CP009164.1|WP_004553368.1|1011550_1012546_-|AraC-family-transcriptional-regulator
MPERSDRLDFYIRDEAARRAITEPHRHAYFQIQFNLGGDTEQRIGGFTRAFPRGALAFVLPYREHLIAHPPGAHFVVINFSQTFLRADLDVDPLDLEDVCAQRAPELAPFRFQEHLDFILTGAAFDDARRLAQRMLEANRARTFGSVPLLRGYLLQLIGLVCTQYAGPLTKLAQSGAHRTGRRDAFARVLRHVRANLTNDALTLAGTARAACLSPNYLAHLIRKETGSTFTDLVTARRIALAQSLLAHTTRRIADIAHAVGFRDEGYFSRRFRACVGVSPKEYRDANGAPGPADALDSVDTAGPRAAPGGGETRGAAGAKSPARAAAKPRA
>NZ_CP009164.1|WP_004202607.1|1013267_1013411_+|hypothetical-protein
MLSAACALLALMLAAGCASPGDMSPSDHAAPMGGYGRGGGSGGGGGY
>NZ_CP009164.1|WP_004199294.1|1013426_1013948_+|sigma-70-family-RNA-polymerase-sigma-factor
MSFESDVVGWLPQLRRYARALTGDPAWADDLVQDTVERAFSRMRAFRPDSNLRAWLLTILRHLYIDQLRARREFAVDDDEGPWRTLEAPAGQIDALVLRDVQRMLYRLPLEQREVLLLVCVEELSYQDASAVLGVPVGTVMSRLSRARERMRALLTDAPLRPPLSLTAARHHR

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Crispr_ID: NZ_CP009164_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009164_2

1071595-1071757

Orphan

Consensus_repeat	Method
GGCGGGCCGGCCGCCGCGCGGGCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP009164_2

>merge|NZ_CP009164|2|1071595-1071757|PILER-CR
GGCCGCTCGGCCGCCGCGCGGGCGCGTGTTCCGCGTGGCGGCCTTCGCCGTGTCGGCCGCGGCGGCCGTGCGGAGCGGGCCGGCCGCCGCGGCGATGGTGGCCGCGCGGATCACGTGGATCACGTTGACGGCGTTGAACGGCGGGCCGGCCGCCGCGCGGGCG

>NZ_CP009164|2|1|1071595-1071757|PILER-CR
GGCCGCTCGGCCGCCGCGCGGGCG	CGTGTTCCGCGTGGCGGCCTTCGCCGTGTCGGCCGCGGCGGCCGTGCGG
AGCGGGCCGGCCGCCGCGGCGATG	GTGGCCGCGCGGATCACGTGGATCACGTTGACGGCGTTGAACGGCGGG
CCGGCCGCCGCGCGGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009164.1\|WP_004202576.1\|1084616_1084913_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009164.1\|WP_004528320.1\|1065288_1065765_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|240030
NZ_CP009164.1\|WP_004199609.1\|1084958_1085576_+\|GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|234745
NZ_CP009164.1\|WP_004528318.1\|1063845_1064835_-\|thymidylate-synthase	unknown	unknown	gnl\|CDD\|238211
NZ_CP009164.1\|WP_038759966.1\|1079830_1082941_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|169983
NZ_CP009164.1\|WP_004528321.1\|1065757_1065937_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009164.1\|WP_025991475.1\|1070083_1071574_+\|arginine-ornithine-antiporter	unknown	unknown	gnl\|CDD\|163522
NZ_CP009164.1\|WP_004199157.1\|1077914_1078586_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225222
NZ_CP009164.1\|WP_004531806.1\|1066350_1067145_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|177970
NZ_CP009164.1\|WP_038759968.1\|1076029_1077784_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|226179
NZ_CP009164.1\|WP_004532965.1\|1071873_1072482_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NZ_CP009164.1\|WP_004528326.1\|1068546_1069383_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|274527
NZ_CP009164.1\|WP_038759970.1\|1072654_1074655_-\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|273520
NZ_CP009164.1\|WP_004528317.1\|1063089_1063830_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225136
NZ_CP009164.1\|WP_004528319.1\|1064836_1065292_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377443
NZ_CP009164.1\|WP_038759971.1\|1067201_1068350_+\|TauD/TfdA-family-dioxygenase	unknown	unknown	gnl\|CDD\|274118
NZ_CP009164.1\|WP_038746557.1\|1083063_1084602_+\|efflux-RND-transporter-outer-membrane-subunit-OprB	unknown	unknown	gnl\|CDD\|182103
NZ_CP009164.1\|WP_004542833.1\|1062047_1062848_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
NZ_CP009164.1\|WP_004537178.1\|1078736_1079834_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP009164.1\|WP_004537230.1\|1074708_1075221_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009164.1\|WP_004528320.1\|1065288_1065765_-\|NUDIX-hydrolase	gnl\|CDD\|240030	cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.08638e-51
NZ_CP009164.1\|WP_004199609.1\|1084958_1085576_+\|GTP-cyclohydrolase-II	gnl\|CDD\|234745	PRK00393, ribA, GTP cyclohydrolase II RibA.	6.64755e-109
NZ_CP009164.1\|WP_004528318.1\|1063845_1064835_-\|thymidylate-synthase	gnl\|CDD\|238211	cd00351, TS_Pyrimidine_HMase, Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides. Both enzymes are involved in the biosynthesis of DNA precursors and are active as homodimers. However, they exhibit distinct pyrimidine base specificities and differ in the details of their catalyzed reactions. TS is biologically ubiquitous and catalyzes the conversion of dUMP and methylene-tetrahydrofolate (CH2THF) to dTMP and dihydrofolate (DHF). It also acts as a regulator of its own expression by binding and inactivating its own RNA. Due to its key role in the de novo pathway for thymidylate synthesis and, hence, DNA synthesis, it is one of the most conserved enzymes across species and phyla. TS is a well-recognized target for anticancer chemotherapy, as well as a valuable new target against infectious diseases. Interestingly, in several protozoa, a single polypeptide chain codes for both, dihydrofolate reductase (DHFR) and thymidylate synthase (TS), forming a bifunctional enzyme (DHFR-TS), possibly through gene fusion at a single evolutionary point. DHFR-TS is also active as a dimer. Virus encoded dCMP-HMase catalyzes the reversible conversion of dCMP and CH2THF to hydroxymethyl-dCMP and THF. This family also includes dUMP hydroxymethylase, which is encoded by several bacteriophages that infect Bacillus subtilis, for their own protection against the host restriction system, and contain hydroxymethyl-dUMP instead of dTMP in their DNA.	1.30878e-53
NZ_CP009164.1\|WP_038759966.1\|1079830_1082941_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|169983	PRK09579, PRK09579, multidrug efflux RND transporter permease subunit.	0
NZ_CP009164.1\|WP_025991475.1\|1070083_1071574_+\|arginine-ornithine-antiporter	gnl\|CDD\|163522	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP009164.1\|WP_004537178.1\|1078736_1079834_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	4.87815e-71
NZ_CP009164.1\|WP_004199157.1\|1077914_1078586_-\|transcriptional-regulator	gnl\|CDD\|225222	COG2345, COG2345, Predicted transcriptional regulator [Transcription].	5.95232e-60
NZ_CP009164.1\|WP_004531806.1\|1066350_1067145_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|177970	PLN02336, PLN02336, phosphoethanolamine N-methyltransferase.	1.10688e-44
NZ_CP009164.1\|WP_038759968.1\|1076029_1077784_+\|amidohydrolase-family-protein	gnl\|CDD\|226179	COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism].	3.64723e-152
NZ_CP009164.1\|WP_004532965.1\|1071873_1072482_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	9.62891e-30
NZ_CP009164.1\|WP_004528326.1\|1068546_1069383_-\|EamA-family-transporter	gnl\|CDD\|274527	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.	3.6885e-23
NZ_CP009164.1\|WP_038759970.1\|1072654_1074655_-\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP009164.1\|WP_004528317.1\|1063089_1063830_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	9.84289e-27
NZ_CP009164.1\|WP_004528319.1\|1064836_1065292_-\|hypothetical-protein	gnl\|CDD\|377443	pfam05014, Nuc_deoxyrib_tr, Nucleoside 2-deoxyribosyltransferase. Nucleoside 2-deoxyribosyltransferase EC:2.4.2.6 catalyzes the cleavage of the glycosidic bonds of 2`-deoxyribonucleosides.	6.6851e-05
NZ_CP009164.1\|WP_038759971.1\|1067201_1068350_+\|TauD/TfdA-family-dioxygenase	gnl\|CDD\|274118	TIGR02409, Probable_gamma-butyrobetaine_dioxygenase, gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.	2.41692e-46
NZ_CP009164.1\|WP_038746557.1\|1083063_1084602_+\|efflux-RND-transporter-outer-membrane-subunit-OprB	gnl\|CDD\|182103	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein.	1.77888e-110
NZ_CP009164.1\|WP_004542833.1\|1062047_1062848_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	4.72971e-126

>NZ_CP009164.1|WP_025991475.1|1070083_1071574_+|arginine-ornithine-antiporter
MKHSVRHPFHPSTPLPARASAPLRAAAPRQLPFALLTALVIGSMIGSGIFSLPQNMASGAGAGAIVIGWAITGVGMLMLALVYQTLAHRKPELDNGVYAYAHASAGDFVGFNSAWGYWVSAWIGNVGYLVIVFGTLGYAFPAFGDGNTRAAVIGASIVLWIMHAVILRGVRGAAILNALTTIAKIVPLVLFVALAALAFQPHRFTTDFWGNVHLPGVLDQVKSTMLITVWVFIGIEGASVYSARAKNRDDVGRATIVGFVVVLLLLMAVSLLSLGIVSQPELAAMKNPSMAGVLEKAIGRTGVAIAGVGLLVSVGGALLAWTLLAAEAMFTPAKDGVMPAFLSRENAHGVPANALWATNGLVQLFLLVTLVSNATYQALISLATSMILVPYLFSAVYALVIAIKGEGYAPGEAVRVRDATIGAVATVYCGWLLYAAGPKYLLLSALLYAPGALLYAWAKRERGERPFKPFEAAILIALVAFASLAGWLVAAGRISL
>NZ_CP009164.1|WP_004528326.1|1068546_1069383_-|EamA-family-transporter
MTPSVIALVLFAAILHATWNALLKSGADRLWSLTVMSFATTAAAAVCAALLPLPARASWPYLAASAALQVGYSVFLALAYQRAALGQVYPVVRGAVPLLVTLGGYAWAGQRLGGAPLAGIALVSGGIASLALGRTRIHSRALAAALATALFIGGYVTIDGLGARVAGHPLAYAAWIFIVYGAAMPAVFLLLGRRPRAGLPRGDTLKSAAGGLISLIGYAAVVDALSRGPVGPIAALRETSIVFSALIGWLWLGEKPSGPRFAACAAVALGAACLAYAA
>NZ_CP009164.1|WP_038759971.1|1067201_1068350_+|TauD/TfdA-family-dioxygenase
MLTSHSDHLQIDWETGRSSRYHWVWLRQACECADCFNAHCRQRRFDPAAIAPGIRPERVLLDAHGVRIVWQDAHVSTYALERLARDDYREAIPPAAAAGWTPWPERGAPSASHFAIGDVLDSDAALRRALNQLFESGLVVLKAGDGAAPPFDAVRERLAGFLEPSYFGDFFDLEVKADDATDSVSFSTSALPLHTDIPYCSPPPDYQFLYGLDVDPRCAREQVGCTRFVDGWAVLRELRDASPEMFERLARTRVVYRADYPGARKRYEHRTPIVRLRADGTVERLINNPTKMFFDGIGFDELMPFFRAYHAFKARLVATMRSYLHAWAQGDMVVWDNRRIFHGRGDFGAPGIVRTLRGGYFREGELRARDAFLAAAGERAAG
>NZ_CP009164.1|WP_004531806.1|1066350_1067145_+|methyltransferase-domain-containing-protein
MQTHTVGLSSEYEAQRYSNAHNILRSEIIYGDGFQSPGGIEGFRTMLAENMAIEPGMRLLDIGSGLGGAAFHLASRFDVTVVGLDTAPRMTELATARQPALDPHARVRFVNGDVHAEALAGERFDIIYSRDALMYVHDKPRLFARCHALLATRGRLYVTDFCRGRASPAFDAYASVSGYDLRTIDDYARIVADAGFDVLSARDVSDDARRQLRGDLDRYEARVAARDPSIDPLDAEHIVERWRRKIGFVDEGCLLQGLFVAQRR
>NZ_CP009164.1|WP_004528321.1|1065757_1065937_-|hypothetical-protein
MECSLNREVKIFIREIPASFARIVSFINHGGGQWPSIGAPGPNERRAKTGARMWSIDDD
>NZ_CP009164.1|WP_004528320.1|1065288_1065765_-|NUDIX-hydrolase
MTDPKGTGDAALATPRVAVIAVTFRGDDVILVRRGKEPQKGTWGFPGGSVEPGECLREAAARELFEETGVRAEVGEPFDVVEVIGFDPHGRHHHYVLVAMLCRHVEGALRPGDDATDCRWVRVPADLSRFPGALADHVARVAQRAHALNHPNRKENSR
>NZ_CP009164.1|WP_004528319.1|1064836_1065292_-|hypothetical-protein
MKRMFLGGPFKSLVDKQTGVMPEGSINLFRRVIDHFEARGWDVHCAHRREHWGREFMTPDVCTKTDYEQISLCDYFVAFPGAPASPGTHIELGWASALGKPIVLLLEADKEYAYLVRGLDEITRIERVEFSGDRIDPVAIEAAIGRFDARG
>NZ_CP009164.1|WP_004528318.1|1063845_1064835_-|thymidylate-synthase
MLRYPGLSELYLATLRDVCGAYEYRSAPRGHAEREIIGYGARIDDPRARFCRHAARKQNVVFNYAEALWYLSGRNDLEFIAHYAPSMARYSPDGKHLPGTGYGARLLHYGERGLDQIERALDILSRDDAESKRVVLQIFSADEELYRRNIDVSCTLGLQLLLREGRLHMVAFMRANDAYIGLLNDVFSFTFLQEYLASRLGCELGTYAHQVGSIHVYDDNLPRVQALLDDSDAAIVTAAAPPRMPAGTRAATIARVLEHEGRIRAGRVSLAALRDIDLDPYWRDVLGLFWIYREIKAGNPPPDEALAFVGPFHRAYLMNRWDMASASLQ
>NZ_CP009164.1|WP_004528317.1|1063089_1063830_-|class-I-SAM-dependent-methyltransferase
MKTDWTEHEVSQRFHAYDDRIEARFGYQPLIAELTGSHGTAIRVLDYGCGGGKVARRLRAAGVARVTGVDIAPTMIEQAIAAGVDDGLDYVHIDGPSLPFDDASFDAAISCFLFVNIAERAALARVAAEVRRVLKPGGAYYVLDTNPRTTGVQYPTFRNGEPGIVYRDGDARPVHLNVPGEGVFDVVDTHWEIPTYRHAFETAGLALAAVMELGFRAADAGGAPGAHADADGSKPFVLFKATRPPR
>NZ_CP009164.1|WP_004542833.1|1062047_1062848_-|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MIANVLTIAGTDPTGGAGIQADLKAFSAMRAYGMAAITAVVAQNTTGVRSFRALDPAFVADQIDAVFDDVAVHAVKIGMIATAAIAEAVAAALVRHRAAPVVLDPVMVAKSGDRLLDPDAVDAIRDKLVPISTLITPNLPEAGVLLGRSEPRTLAEMHAAAAELHALGSRWVLLKGGHLAGERSVDVLRGPAAATVELSAPRVATNNDHGTGCTLSAAIAALLPSHSVEDSVCQAKAYLSDALAASGELEVGRGHGPVHHFHALWN
>NZ_CP009164.1|WP_004532965.1|1071873_1072482_+|rhomboid-family-intramembrane-serine-protease
MTLAIVVLNVIGFLVELAAPERVLSLFALWPPRAGAGLPPAAAPAFHVWQLVTYSALHAGLSHLLFNMLGLVMFGRDVERALGRARFGALYLASVVCGALTQLALARYSAAAAAPTIGASAGVFGVLAAYALLYPSRRVVLLIPPIPMRAWVFALLYAGGELLLGVAGAASGIAHFAHLGGMFGAIALMLAWGRPRSEWPVQ
>NZ_CP009164.1|WP_038759970.1|1072654_1074655_-|ATP-dependent-zinc-metalloprotease-FtsH
MKSETGYMGFVVVLVFMVLLALQLATLSAPATQIAYSDFRKLAAAAQLDDLEVSPTRITGVLRSASAAAALPASDAEAIKRAGTPWRFSTKRVTDERLIDTLAATGTRYRGADDDTWIGTLASWIVPIAVFALVWNLMLRRPRGGLQDWSGVGKSKPRVYVEAKTGIDFDDIAGIDEAKAELQQIVAFLRAPARYQRLGGKIPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCIIFIDELDALGKVRGAGLASGNDEREQTLNQLLVEMDGFQANSGVILMAATNRPEILDPALLRPGRFDRHIAIDRPDLTGRRQILSVHVKHVKLGPDVDLGELASRTPGFVGADLANIVNEAALHAAELDKPAIDMSDFDEAIDRAMTGMERKSRVMSEREKITIAHHEAGHALIAQTRAHSDPVKKVSIIPRGIAALGYTQQVPTEDRYVLRKSELLDRLDVLLGGRVAEEIVFGDVSTGAENDLERATEMARHMVARYGMSERIGLATFGDADTQGLSPLVWQRGGERCSESTATRIDDEIQRLLAEAHDRVSRTLKERRGALERIAGYLLEHEVVDHDKLVRLVNDEPTPEPGARDPGGEAAKRSGIGAAPAKPPAEVGSAELRDPARKADNADHSVPQ
>NZ_CP009164.1|WP_004537230.1|1074708_1075221_-|hypothetical-protein
MIYGSNELYAAMRQRRDRLPRAHPADGYGAPARLKSGMGCTECGALYDDGRWSWHAAAGALLQIVCPACRRIRERASAGELVLEGGYFARRRDDIVALLRRHAGDDINARPLGRILSIDALPARMVVRTKGSPLVHRLTEALVRTHRGDLEIDYREGEDTLRAHWMRDAA
>NZ_CP009164.1|WP_038759968.1|1076029_1077784_+|amidohydrolase-family-protein
MTRYDTIIRNGLWFDGTLAEPRPRELGIRDGRVAAVSDTPLAADGASVIDATGKWVMPGFIDIHTHYDAEILVSPGLPESVRHGVTSVFLGSCSLSTVHANALDCTDLFSRVEALPREQMLAVLSRVKTWDTAAAYVRHLESLPLGPNVAAFLGHSDLRTHVLGLGRAVDDRVRPHEAELQRMERLLDDALDAGFVGLSSMTTPWDKLDGERYRSKSLPSTFATWREYRRLNRVLRRRGRVLQSAPNTTNPLNGLLFMAESCGYFVRKPLRTSLLVAADGKAAPRGTIDVQLGGVRVANALFRGELVWQHLPVPFEVYADGIDFVIFEEFGAGRAALHLADALERNKLLQNEGYRREFRRQVGKGFDLRLWTRDLHDTRIVGCPDASVVGKSFGQVANERGVHPADAFLDLVVAHGQRLRWCMTIANHRADVLDRIATHPALQIGFADSGAHLRNMAFYNAPVRFLRRVREAERAGRPFMSVQQAVHRLTGELGAYFGVDAGTLRAGDRADIAIVDPAHLDASVDAYHEEDMAVFGGLRRLVNRSGAAIAATLVNGQLVYRDGAFAEGFGDTRRSGRFLRAAAR
>NZ_CP009164.1|WP_004199157.1|1077914_1078586_-|transcriptional-regulator
MDDNFSKQEIPVSERVLNVLKRRGPLQAAELGAYLGTTGEAARQQLKKLEAEGLVEAQNVPQGVGRPARIWRLTSLGHGHFPDAHADMTVDLIRIIRTTLGQPTLDLLIAARETEMRRTYAHTLAGVTDPEERIARLAELRDREGYFAEWSRAPDGDGWLFIENHCPICAAATACQGFCRSELEIFREMLGDALTIERIEHIPAGARRCAYRIRPSGAGAGGE
>NZ_CP009164.1|WP_004537178.1|1078736_1079834_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MGRRLLLALALLAFIFGGLFLWRESRVQAADHPPAPPAALTVSAVAVRAAPERVTLDAVGSLDAVRQVTLAPEVAGRVVALQFDAGSAVRKGQLIVQLFDEPERAKLASIQAKAAYAKRQLDRSQALAQTGAEPRNLFDQHRFDFDAAAADIRETQAVITQKAVRAPFDGVLGLRRVNLGQYLNAGDAIATLTDLDTLYANFTVPQKNLSQLRLGQSVSITTDAYPERTLVARVSAIEPQIGTDTRNVAVQATLPNPDHLLRPGMYIQARLELPPRERALTVPDTAVQTSQRGESVLVVGKPGRDGLGVVRLQPVRTGRRADGRIAIADGLRPGDVVVTSGQVRLAAGDRVKVALDDGAGSGAAQ
>NZ_CP009164.1|WP_038759966.1|1079830_1082941_+|efflux-RND-transporter-permease-subunit
MNAGAPHDSGAAHARFTDVFVRRPVLSLVFSLLILLVGLRALMSLPVRQYPALESATISVATDYPGASQELMQGFVTTPIAQSIATADGIEYITSTTTQGKSVVKARLRLNANADRAMTEVMAKVQQVKYKLPADAYDSVITKLTDAPTAVMYLGFASDALSIAQITDYVVRVAQPLVTTVPGVASAEILGGQNLAMRVWLDATRLAAHGLSAGDVAAAIRANNVQAAPGQVKGSLTIADISANTDLTDVGAFNEMVVKSAPNGGGLVRLKDVATVEIGGENYNSSALMNGRRAVYIAVNATPAGNPLEIVRGVGAVLPAMERNKPASVQIANMFDGARFVNASIAEVRSTLTEAIAIVVVVIFLFLGSFRAVIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMVLAIGLVVDDAIVVVENIHRHIEQGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMGGLTGSLFKEFAFTLAGAVLVSGIVALTLSPMLGSLLLTSRMSEGRVAKAIERTLERVTHAYRRGLHASLAARPAILLIGAGVLAGIVLLFSGVKRELAPQEDQGSIMVAVKAPQYANLDYMERYAPDIERVFRTLPEADTSFILNSYGGSNLGFAGVNLVDWDKRTRSAAALQALIQARGDGIRGERVFAFQLPALPASSGGLPIQMVLRTPSGFADLYAQMERIKAAAQKSGLFAVLDSDLTFDSRAVGVTIDRNQANTLGVTMKDIADTLAVLVGENYVNRFNFKGRSYDVIPQVSRSERLSSEMLSRYYVKTGSGQMIPLSTVIQVTNGSQANALSQFNQMNAATFSAVPAPGVTMGDAVAFLEAQKLPAGFSIDWLGESRQYVQEGNRLAVTFGFALIVIFLVLAAQFESLRDPLVILVSVPLSICGALAPLYLGFATLNIYTQIGLVTLIGLISKHGILMVSFANDLQRHEGLDRRAAIERAAAVRLRPILMTTAAMVAGLVPLVFAAGAGAASRFAIGITVSTGMLVGTLFTLFVLPTVYTFVAKDHGAAMRSERAQLLAATR
>NZ_CP009164.1|WP_038746557.1|1083063_1084602_+|efflux-RND-transporter-outer-membrane-subunit-OprB
MRTAVRAAAVAAAFFAAGCTLAPRYERPAAPVSGAFPADGVYAAQPGAAPGARSANGQAAVDIGWREFFVDPRLQRLIEIALKNNRDLRVSVLNVEASRAQYQITRAGLFPTLSGTGTGTIQRTPAGVSITGQPLISRTYNVGVSASWELDLFGRVQSLKDQALAQYFATAQARKAAEISLVASVADQYLTLLSTDDLLQVTQNTLKSARASYDLTKLQFDNGTGSELDLRQAQTVVETALASQQAQARARAQALNALVLLIGEPLPDDLPAGLPLNAQNLLTDIPAGLPSDLLTRRPDIMQAEETLRAANANIGAARAAFFPKISLTSAFGTASPTLGGLFKAGTAAWSFAPNIALPIFEGGQNIANLDLAHVQKRIEIANYEKAIQSAFREVSDGLAARGTYDQQIAALERNEHAQQRRYDLSDLRYRNGVDSYLSVLTAQTDLYSAQQQLISARLARWTNLVDLYRALGGGWLERAGETPRPADAPVDYGKAAPAPAASASARTAAVIG
>NZ_CP009164.1|WP_004202576.1|1084616_1084913_+|hypothetical-protein
MRQPNARQHSARRPSAARAGRERIGRTWRTKKKTDREMIGDTVIGTDAQSAMLLHNRTQQPIKSSPRTRETATNRKSIQAFDITIQKLPCSSRCVSQC
>NZ_CP009164.1|WP_004199609.1|1084958_1085576_+|GTP-cyclohydrolase-II
MSASVRTRVNVPIRPRTAQQRFDAEMVTFQGLCDSAEHLALVFGPLADAPLVRVHSECLTGDVFGSARCDCGEQLDESVAMFGREGGILLYLRQEGRGIGLYNKLDAYRLQISQGLDTFAANRALNFPDDLRDFRVAAQMLQALGVTEISLVTNNPDKVSQIEKHGIRIRRVLQTGVFVNTTNHGYLRAKIDHHRHAINLSQELQ

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Crispr_ID: NZ_CP009164_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009164_3

2266484-2266617

Orphan

Consensus_repeat	Method
GCATCCCGATGATCGGGTATTCCG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP009164_3

>merge|NZ_CP009164|3|2266484-2266617|CRISPRCasFinder
GTCACTCGACGACCGAGTATTCCGGACAGGGCGCACCCCGGCGATCGAGCATCCCGATGATCGGGTATTCCGGCGGCGGCGCCTCTGCGGTGGAGTGCTTCGGCGAGCAGGCATCCCGATGATCGGGCATTCCG

>NZ_CP009164|3|2|2266484-2266617|CRISPRCasFinder
GTCACTCGACGACCGAGTATTCCG	GACAGGGCGCACCCCGGCGATCGA
GCATCCCGATGATCGGGTATTCCG	GCGGCGGCGCCTCTGCGGTGGAGTGCTTCGGCGAGCAG
GCATCCCGATGATCGGGCATTCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009164.1\|WP_038760024.1\|2279610_2281062_+\|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|237001
NZ_CP009164.1\|WP_038760047.1\|2270414_2272313_-\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_CP009164.1\|WP_038733422.1\|2267869_2270143_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|369639
NZ_CP009164.1\|WP_038725491.1\|2262622_2264464_-\|ribonucleotide-reductase-like-protein	unknown	unknown	gnl\|CDD\|180772
NZ_CP009164.1\|WP_004187469.1\|2267341_2267737_+\|TraR/DksA-C4-type-zinc-finger-protein	unknown	unknown	gnl\|CDD\|224648
NZ_CP009164.1\|WP_004187137.1\|2256431_2256881_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341411
NZ_CP009164.1\|WP_009941268.1\|2256884_2257214_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009164.1\|WP_038760034.1\|2253332_2254442_+\|porin	unknown	unknown	gnl\|CDD\|238208
NZ_CP009164.1\|WP_004205322.1\|2272984_2273920_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NZ_CP009164.1\|WP_004532536.1\|2278565_2279609_+\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NZ_CP009164.1\|WP_004557971.1\|2275634_2276075_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176863
NZ_CP009164.1\|WP_024431680.1\|2272372_2272969_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009164.1\|WP_004523279.1\|2259171_2260203_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|236122
NZ_CP009164.1\|WP_038760045.1\|2274217_2275333_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|378454
NZ_CP009164.1\|WP_004529498.1\|2254826_2255261_+\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NZ_CP009164.1\|WP_038760030.1\|2257342_2259175_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223732
NZ_CP009164.1\|WP_004523292.1\|2277327_2278560_+\|3-methyl-2-oxobutanoate-dehydrogenase-(2-methylpropanoyl-transferring)-subunit-alpha	unknown	unknown	gnl\|CDD\|223997
NZ_CP009164.1\|WP_038760026.1\|2264679_2265945_-\|polyhydroxyalkanoate-depolymerase	unknown	unknown	gnl\|CDD\|130908
NZ_CP009164.1\|WP_038760028.1\|2260736_2262548_-\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	unknown	unknown	gnl\|CDD\|225098
NZ_CP009164.1\|WP_038760032.1\|2255310_2255964_-\|SagB/ThcOx-family-dehydrogenase	unknown	unknown	gnl\|CDD\|380318

Protein	Function_ID	Function_description	E-value
NZ_CP009164.1\|WP_038760047.1\|2270414_2272313_-\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	1.97263e-34
NZ_CP009164.1\|WP_038733422.1\|2267869_2270143_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|369639	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	8.12414e-57
NZ_CP009164.1\|WP_038725491.1\|2262622_2264464_-\|ribonucleotide-reductase-like-protein	gnl\|CDD\|180772	PRK06948, PRK06948, ribonucleotide reductase-like protein; Provisional.	0
NZ_CP009164.1\|WP_004187469.1\|2267341_2267737_+\|TraR/DksA-C4-type-zinc-finger-protein	gnl\|CDD\|224648	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms].	1.7869e-14
NZ_CP009164.1\|WP_004187137.1\|2256431_2256881_+\|CBS-domain-containing-protein	gnl\|CDD\|341411	cd17775, CBS_pair_bact_arch, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and archaea. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.39507e-50
NZ_CP009164.1\|WP_038760024.1\|2279610_2281062_+\|2-oxo-acid-dehydrogenase-subunit-E2	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	1.62258e-132
NZ_CP009164.1\|WP_038760034.1\|2253332_2254442_+\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	9.13782e-51
NZ_CP009164.1\|WP_004205322.1\|2272984_2273920_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.67997e-62
NZ_CP009164.1\|WP_004532536.1\|2278565_2279609_+\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	0
NZ_CP009164.1\|WP_004557971.1\|2275634_2276075_-\|SRPBCC-family-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	7.66567e-25
NZ_CP009164.1\|WP_004523279.1\|2259171_2260203_-\|nitroreductase-family-protein	gnl\|CDD\|236122	PRK07877, PRK07877, Rv1355c family protein.	3.7258e-30
NZ_CP009164.1\|WP_038760045.1\|2274217_2275333_+\|SRPBCC-family-protein	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	1.9875e-11
NZ_CP009164.1\|WP_004529498.1\|2254826_2255261_+\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	9.00264e-33
NZ_CP009164.1\|WP_038760030.1\|2257342_2259175_-\|STAS-domain-containing-protein	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	8.34597e-107
NZ_CP009164.1\|WP_004523292.1\|2277327_2278560_+\|3-methyl-2-oxobutanoate-dehydrogenase-(2-methylpropanoyl-transferring)-subunit-alpha	gnl\|CDD\|223997	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion].	5.32689e-143
NZ_CP009164.1\|WP_038760026.1\|2264679_2265945_-\|polyhydroxyalkanoate-depolymerase	gnl\|CDD\|130908	TIGR01849, unnamed_protein_product, polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some [Fatty acid and phospholipid metabolism, Degradation].	3.1294e-115
NZ_CP009164.1\|WP_038760028.1\|2260736_2262548_-\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	gnl\|CDD\|225098	COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown].	4.07716e-75
NZ_CP009164.1\|WP_038760032.1\|2255310_2255964_-\|SagB/ThcOx-family-dehydrogenase	gnl\|CDD\|380318	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC. This family is the oxidase domain of NRPS (non-ribosomal peptide synthetase) and other systems that modify polypeptides by cyclizing a thioester to form a ring. These include EpoB, part of the epothilone biosynthesis pathway; TubD, part of the tubulysin biosynthesis pathway, MtsD, part of the myxothiozol biosynthesis pathway; IndC, part of the indigoidine biosynthesis pathway and TfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.	5.8246e-20

>NZ_CP009164.1|WP_038760026.1|2264679_2265945_-|polyhydroxyalkanoate-depolymerase
MLYAWLEAQREFFRACQPWAGAAQRAGAGARPAGWPTWGPMARAADAVPAPPSFAIASIEIDGAAVPVDECVVDDTPFCALRKFSRRLRGDAAARPAVFLCTPLAGHHAVMLRETVETILATHDVYVTDWRNARDVPLEAGAFGLDDYVCTLERFVAGAAGDGLHMMAVCQATVPALAAVALLAARDVHVTSVALLGGPVDTRSHPTLIDRFALEHDLDWFRRTAIDIVPPPYAGAGRRVYPGFIQHAAIIVAHPQRRASLESRYWAAWMTGDFAAAARCLREMNEYGAVLDMTERYFLDTIRVIFHERLLAQGRWSIGRRLVAPQRLTRTALCTIEGGRDDIAGAGQTHAAHALCDAVPDAVRERITEPDCDHYDLFLGPRWRRTIHPALDAFWTRAEAARAAAGEPRPTAERVERRIAH
>NZ_CP009164.1|WP_038725491.1|2262622_2264464_-|ribonucleotide-reductase-like-protein
MRTINKRTRAIAHADSFVRMIGDMDDQPICDAVFADRYALPGEHSRAQACARVARALALAEPMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHTAPPRDAPGGALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIGATSPCGAQPLPPYGSAMLGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAYPLCDRHAHLDALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGAPGMRAENHAHRLFRSLRGERAALPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV
>NZ_CP009164.1|WP_038760028.1|2260736_2262548_-|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein
MTTGAVAARRLPRRGTARGRRAPSRAFTIHGGDEMRRSRPPKPAKPAAVRRRPHGAARAHAIRGNGPQRRAVRERAARRLSRDIDAALRRASTYPHPAGPIVRIETHLSVVYLVGRFAYKRLKPFDFGFANFSELATRRRACEAELALNRPLAAPIYLAAGPLVRRARGLRLFGAGAAVDHVVRMRRFDERMLFSRLLARGALDAADIDAAATRLAAYHLHAPRDIPRRAYGSARELRRQLDDMLAPLERALGAALPASLRAWCVRRCDELAAHLDARRADGYVRACHGDLHLNNVVKRGRDALMFDCIDFDDALRWIDVINDLSFLLMDLHAHDRAALAHRLLNRWLDETGDFAGLAALPLYVAYRALVRALVATMRAGGDAAARAARIERARRYVDVAAHAARARRPCLLLCHGYSGSGKSVASRALADVSGAIRLSSDSERKRARPFAAVDARPLPASAYTPQQIDAQYERLRALARDVLRAGYTALVDATFLSHARRARFFALARELGVPVYVLDFHASRACLERRVDARAAARDDRSDAGAAVLATQRASADPLDADERARAIGFDTDVPLATLRSAGYWRPVLDALDAARVDAQATR
>NZ_CP009164.1|WP_004523279.1|2259171_2260203_-|nitroreductase-family-protein
METSPLKTTTPEAIPPFDPSASVEDKLRLAIHYAILAPSSHNTQPWRFMVGDGSVMLCADRLRALSVVDPYDRELLISCGAALLNLRVALSRFGFAYVIDMFPSPSDPDVIALVRLDPHGYHDESLVPLFDAILERVTTRTPYANEAVPCDVQRALVDAGAAEGAEIACVDAPHALDEIAELIADADRLQFADPRFRRELANWVHPRRHDDGMPAFAAGVPALLDFATPVVASAIRTFDLGGGLAAMHHKLVDGSPLIVGISTASDDRDAWVAAGQALERVLLVAAAAGLTASYLNQPIEIDALRERLRPLLHVDAHPQLLLRIGRGPVVAHAPRRPLMDVVS
>NZ_CP009164.1|WP_038760030.1|2257342_2259175_-|STAS-domain-containing-protein
MTERERAARGRNDARRGGSDSGGDDEAWRRWLPGIATLRTYRRAWLARDLYAGVALTAVLVPVGMSYAQAAGLPVIAGLNASIAALVGYAIFGPSRILVLGPDSALAALIAGAIAPLAHGEPAHAVALAAALALMSGGFCVLAGLLKLGFVTDLLSKPIQYGYLNGLALTLIASQLPSLLGTVPLGGTFVDQVASLAATVAQGRIDFASLALGGGCLAGIALLRRVAPAWPGMLIAVAGASIVAAWLGAAPDAGGAHAHVAYAHVANAHVALVGSLAGTLPPLGLPSISLADASRLIAGALAIAMVSVADISVLSHVFAQHDGSETDRNQELCALGAANLLAGMLRGCAVSSSASRTPVALAAGARTQLTSLVAAACIALLLVAPTLLARVPLAALAAVVVYSANALVDVRAIVRLDRVRRGECAVSVLCFAGVVLLGVVPGILLAVGLSLLSFVWRAWHPYDAVLGRVEGMHGYHDVSRHPGAALTRGLVAFRWDAPLFHANATIFRDHVRDAIAEAGAPVRCVVIAAEPITDVDVTAADMLATLRDELAARRIALVFAEMKGPVKDRLRTYGLFEKIGADHFFPTVTDAIEHFTRMRKDVATARRARR
>NZ_CP009164.1|WP_009941268.1|2256884_2257214_+|hypothetical-protein
MLSSRLVSSRLAPCCVYIDIQGEGDVDVDAEGNGNGNIDVIDSKRCEPSGVEPVERAVRRPRYRAQSGCLSGIHRNGIVMPDPMPPTNRFDRLRASAVIVDRTKPRRSP
>NZ_CP009164.1|WP_004187137.1|2256431_2256881_+|CBS-domain-containing-protein
MNAAEICTREVVACRRTDTVLDAAHLMRDRHVGDLIVVDDAGHAHAPVGMLTDRDIVLSLIAKEVDPAALFVGEIMSAPAAVVHEHDSLWTIAQRMRLTGVRRMPVVNADGALVGMVSVDDLLASVAALFDEIASISRRQIHFEEKARD
>NZ_CP009164.1|WP_038760032.1|2255310_2255964_-|SagB/ThcOx-family-dehydrogenase
MSDPELLTYQPIAVALPEPAEAGAPAVIDLPPPDLGAGLPLMSALSLRASTREFSSAALAPTTLGELLWAADGVNRPTTGGRTAPSAHAFNEIDIYAALPDGVYRYDAALHRLLLKHAVDARNLTGYQDFVGAAPLDLIYVVRMSRLLSMPKPLRETFSAVAAGAIAQNVALYCASTGLGCVVRGWINHRLLAEALSLNEDELPILAQTVGKPAAHP
>NZ_CP009164.1|WP_004529498.1|2254826_2255261_+|Hsp20/alpha-crystallin-family-protein
MSNVTRYDPFSLEPVSDLFQGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGVDKNDINVQIDGNTVSISAKVERNKELKEGERVIRRERYSGEFARTFSLANELDRDAASAQYQDGVLSLTLPKKASSEKKKLTIG
>NZ_CP009164.1|WP_038760034.1|2253332_2254442_+|porin
MMNAKSIAAAALAVAQAGLAHAQSSVTLYGALDAGVLWQNTSAASFSPTAPNTGAVGRFKDGGVYSSLWGIKGTEDLGGGYRVNFRLQGAFDGGTGKFGLSDAPGAVAAFNQIATLGVSGPFGTFNAGRQIVPMIYAMADTDVRAARFFGSVLTAWLGLNTAAGWPGNSTNAPIGALYDSDALVYQSPAFGGASLALEYAPGGVPGGVQRGARASNALNLAAVYYNGHDTNPAPGASATGLDNNRFVYVGAQYKLKDVAVSASYGNGRNPARGDRVNLDMFAFGLGYRVSPFFRVSSGVYYLKDRNRLANRSTSIVLGADYELSKHTTLYAQGGRVDNRGTMAQMLAYGQPVAPGLATTAAMLGMRHSF
>NZ_CP009164.1|WP_004187469.1|2267341_2267737_+|TraR/DksA-C4-type-zinc-finger-protein
MAAFDEHQLQVLGALLRACRQALQADVRAGERQRADEPYANLAGPAPDEGDEANADLFVDVDHALLGMKLAELRDVDAALQRIARRDYGCCADCGQPIAYERLLARPTALRCAPCQRAHERRFATQPRPSL
>NZ_CP009164.1|WP_038733422.1|2267869_2270143_+|FAD-dependent-oxidoreductase
MREFDYLLVGGGIASVTAARTLRGEDASASIAILCGEPVLPYQRPPLSQEWLMGAVQPASITLHDAAFYAAQRIDIALGVRAEQLDRAKRIVRTSSGATFRYGKLLIATGASAKAPALPGFGLDGVHVLHTFAQAQALKDAAAHARRATVLGGGFLGVEIAATLQALGLQVTLVERAPGVMPSLRAPALGGHFEALCRARGIDVLTRCEVRRVLGAQCVEAVETSDGGTRPCDLFVAAVGVTPNCGWLDGSGLALGDGVEVDAFLQTADPDVFAAGDVAHFDDPIFGVRRRIEHWDNAVRQGRIAARNMLGHRLPYRDVSIFYGSVFGLSYNLLGYPVGATETIERGAFDEASYMQLYLADDVLRAAFTIDRPAVEIAALNDAIRLHVNVAARKTKLSDPNYPLDKLPVQTILILQGGGALGAFECGAVKALEQHGVRPDVISAVSIGAFNGAIVASHPKGATKALEAFWRELSIALPLPYESQWREAWLSSYVLSFGVPNFLKPQWSQLGFDADRLRAKWTSFFDATAIEQLIARYVDFDSLGMSPTRLLIGAVDVETGEPRIFDSYVDRLSPAHVLASGSLPPGMPWTVVDGRPYWDGGVVSNSPLDLVIARCGQIGGRVFIVDLFSGSKALPTNLVEVMLRREEIAYMDRVRNDLRFEEYASDFRDLVDGILAHVDAPSANEIRQQPLYIRLMGNRAAIDIARITLNREGRLSFIEDYDFSSDAIAQLQQQGYDAALVALANGRSRRRRGRRRA
>NZ_CP009164.1|WP_038760047.1|2270414_2272313_-|GMC-family-oxidoreductase
MLGATRSTLWGSRERPRIAAARAPGAVASRMREEARECAGPRGAGRAPHRATAAGGKTGRRTVRAPSRARAGSNNQKVNRMKQQSYDYDYVVVGSGFGGSVSALRLSEKGYRVLVIEQGRRWTPENLPESTWNLSRWQWRPALGLHGFFSMRFFRHVVVLHGNAVGGGSITYANTLLVPPDKVWREGTWAGLEDWERVMPAHYATAKRMLGVVTNRRMDAADFRLKDMAKLIGVEKSFYPTEVGVFFGDDADAPGTRYADPYFGGAGPERTSCIGCGGCMVGCRHGAKNTLDRNYLYLAERLGAQVREQTKVVDVRPLDARADGAAGYAVEAVSLAAGARGAKSRLTCRGVVFAASSLGTQDLLMRLKEKGSLPRLSDALGKRVRTNAESLIGVRFPKSRVDLSKGVAIGSGIYIDEHTHIEATRYPSGSDTMGLLTTVLTRGAPGGLRVLVWLGALAKLVLTRPLSAWRMIDPRGFARETMIFLCMQTLEGHLTMRLKRRWFWPFSKQLATSGAKIPAYIPAANDFAQKAARALGGVPMTSLTEILLNVPMTAHCMGGAAMARDARDGVCDGRSRVFGYRNMYVCDGSVLGANLGVNPSLTITALAEHAMSHVPAAREQRWDSTAETPVAA
>NZ_CP009164.1|WP_024431680.1|2272372_2272969_-|hypothetical-protein
MCRARGIGRQARGNATAPSPIAAAAIGARPRSAPRGPRICISDAGRLAAARSAFAMHQERRKRNADRHGTHQYDADSRAAPREAPRFEHEPKKQRDAAQHEVDRDRAAREIRERIEHKARPDVRRAERPISQDVAQTPIGAAGAISPSTAHSIFLEIGLALAGRPIQVRRNRAPFTHGTPRRRPARGPTARTASPAPV
>NZ_CP009164.1|WP_004205322.1|2272984_2273920_-|LysR-family-transcriptional-regulator
MIQNLRQLDLNLLLVFDALMQEQNLSRAAIRLHMSQPAVSNALTRLRQQLGEPLFTRTARGMTPTAQARTLYEPVRQALYLLQIGLGPQADFEPDTHHLFKLSMNDYGQTVLLPDLLAHIKSRAPNVMLSVQSDDAGSIPAQLTTGTLDLAIDYLHFDNPELCYEPLHEEHLVVIGRAGHPAFAGGLALRGYEESGHVSIQPRDRRGSPLEIVLGSARVRRVVHLQVPHYLTIPALVAKSDLLGTIPRRLAERFADVYALQIAPLPIDIAPIQVSLIWHRQQDAQPGLRWLREQVVLTHRAIIGCGEHAPA
>NZ_CP009164.1|WP_038760045.1|2274217_2275333_+|SRPBCC-family-protein
MTQDVTVFRARYRASVHPRYNAWLHGGFVLAYGCAAIAFFLKDVARVSAVQWASVPAAFLLFNWLEFTVHRHVGHVKRRFGAMFYRRHTGDHHSFFANEQIAYREARDWRVILFPAWLIVVFSLGLFALHAVLGRFDANVAGLFASTMLGGYLLYECVHACEHLPDAHPLAKWLWIRQMRVLHRVHHRDALMRSCNFDVIWPLMDWLHGTLRWSEAPGADMSTRMRHEIDIACAGADVLAYASDASRWPEWHPSSLRVDGPAGSLAAGSRFDEDVRAAGRVDRLHWDVVRNEPGVMWQARAANTAGSLRILLTYECSGGPRGARFVRTLHYHSPNPLLRLANALVMRGRVERESAYSLTLLKRRLEAARDA
>NZ_CP009164.1|WP_004557971.1|2275634_2276075_-|SRPBCC-family-protein
MKQQRIEIAEEFDAPVHQVFRFFSEHENLKSIFSPARIRRISDGEPARNGVGSAREMRVPGAPPFVETVTAYQENELIEYRITRGSPLRDHLGVMRFVPIDERRTYFHYVITFEGKVPFVAPVVRHVLEGSIRRGLGKVATRRLWG
>NZ_CP009164.1|WP_004523292.1|2277327_2278560_+|3-methyl-2-oxobutanoate-dehydrogenase-(2-methylpropanoyl-transferring)-subunit-alpha
MSQYGPLRLHVPEPTGRPGCKTDFSYLRLSPAGKVRKPPIDVAPADTSDLAYGLVRVLDEHGRAVGPWAPDLDPDILRKGIRAMLKTRIFDARMQIAQRQKKISFYMQCLGEEAIAVAHTLALERGDMCFPTYRQQGILMVREYPLVDMMCQLMSNERDPLKGRQLPVMYSTRDAGFFSISGNLATQFIQAVGWAMASAIKGDTRIASAWIGDGATAEADFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGEGATFAGRGVGCGIASLRVDGNDFLAVYAASRWAAERARRNLGPTLIEWVTYRAGPHSTSDDPTKYRPGDDWTNFPLGDPLERLKRHMIGIGVWSEQDHEDTKAALEAEVLAAQKEAERYGTLADEHVPNVASIFEDVYKEMPAHLRRQRQQLGV
>NZ_CP009164.1|WP_004532536.1|2278565_2279609_+|alpha-ketoacid-dehydrogenase-subunit-beta
MTTASREGPAASPMTMIQALRSAMDVMLERDGNVVVFGQDVGYFGGVFRCTEGLQNKYGKSRVFDAPINEGGIVGAAVGMGAYGLRPVCEIQFADYFYPASDQIVSEAARLRYRSAAEFIAPLTIRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLISAIENDDPVIFLEPKRLYNGPFDGHHERPVTPWSKHPASLVPDGYYTVPLDSAAIVRAGGDVTVLTYGTTVHVSLAAAEETGIDAEVIDLRSLWPLDLDTIVESVRRTGRCVVVHEATRTCGFGAELIALVQEHCFHWLEAPVERVTGWDTPYPHAQEWAYFPGPNRVGDALRRAMEN
>NZ_CP009164.1|WP_038760024.1|2279610_2281062_+|2-oxo-acid-dehydrogenase-subunit-E2
MGVHVIKMPDIGEGIAEVELGLWHVKVGDRVKEDQAIADVMTDKASVEIPSPVTGVVVALGGKEGDVLAVGSELVRLEVEGDGNHKAEPDGGARAAAAQPERVADTAHAHAGAAAKSARGEHGAGHGRDDARAASSGTSSGASHTQHAEREARGHRESSECREDRSVSRGASQTDVERGPASPPPARRPGERPLASPAVRKRAWDLGVELRYVHGTGEAGRILHEDLDAYLQGRGAAAQRARGGQAAYVERHDEEAVPVIGLRRKIAQRMQDAKRRIPHFSYVEEIDVTELEALRAELNRKYGDTRGRLTVLPLLARAMVIALREFPQINARYDDEAGVVTRHGAVHLGIATQSKAGLMVPVVRHAEARDPWSIAAEVARLADAARAGRAERDELSGSTITITSLGALGGIASTPVINSPEVGIVGVNRIVERPMFRGGAVVARKLMNLSSSFDHRVIDGMDAAEFIQAVRALLEQPALLFVE

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Crispr_ID: NZ_CP009164_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009164_4

2337790-2337914

Orphan

Consensus_repeat	Method
CGAGGCGGAACGCCGGGCGCGCCGCCGCGCACGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009164_4

>merge|NZ_CP009164|4|2337790-2337914|CRISPRCasFinder
CGAGGCGGAACGCCGGGCGCGCCGCCGCGCACGGCGCGTCGGGCGAAGCGGTTCGGATAGGGTTGCGAACGGGCCGAGCGCTTCGATCGCGAGGCGGAACGCCGGCGCGCGCCGCCGCGCACGGC

>NZ_CP009164|4|3|2337790-2337914|CRISPRCasFinder
CGAGGCGGAACGCCGGGCGCGCCGCCGCGCACGGC	GCGTCGGGCGAAGCGGTTCGGATAGGGTTGCGAACGGGCCGAGCGCTTCGATCGC
GAGGCGGAACGCCGGCGCGCGCCGCCGCGCACGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009164.1\|WP_004553960.1\|2335718_2336069_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009164.1\|WP_004529429.1\|2342936_2343125_+\|DUF3008-family-protein	unknown	unknown	gnl\|CDD\|314387
NZ_CP009164.1\|WP_004541992.1\|2339962_2340721_-\|DUF4397-domain-containing-protein	unknown	unknown	gnl\|CDD\|379570
NZ_CP009164.1\|WP_004552255.1\|2333140_2333452_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009164.1\|WP_004529443.1\|2330476_2330725_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009164.1\|WP_011853920.1\|2339007_2339904_-\|manganese-catalase-family-protein	unknown	unknown	gnl\|CDD\|226076
NZ_CP009164.1\|WP_038760363.1\|2341395_2342871_+\|RNA-polymerase-factor-sigma-54	unknown	unknown	gnl\|CDD\|237109
NZ_CP009164.1\|WP_004523334.1\|2332520_2332790_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009164.1\|WP_004529446.1\|2329115_2329760_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009164.1\|WP_004523343.1\|2343932_2346059_+\|catalase-HPII	unknown	unknown	gnl\|CDD\|236886
NZ_CP009164.1\|WP_004541952.1\|2343410_2343797_+\|DUF3022-domain-containing-protein	unknown	unknown	gnl\|CDD\|378603
NZ_CP009164.1\|WP_004523342.1\|2343169_2343331_+\|DUF1328-domain-containing-protein	unknown	unknown	gnl\|CDD\|227774
NZ_CP009164.1\|WP_038760365.1\|2346666_2347764_+\|Ku-protein	unknown	unknown	gnl\|CDD\|274290
NZ_CP009164.1\|WP_004523336.1\|2333488_2333785_+\|lipoprotein	unknown	unknown	unknown
NZ_CP009164.1\|WP_028201486.1\|2338110_2338620_+\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377580
NZ_CP009164.1\|WP_004542031.1\|2336518_2336863_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009164.1\|WP_004529441.1\|2331017_2331317_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009164.1\|WP_004523344.1\|2346081_2346585_+\|DUF421-domain-containing-protein	unknown	unknown	gnl\|CDD\|225205
NZ_CP009164.1\|WP_004552253.1\|2334181_2335039_+\|MipA/OmpV-family-protein	unknown	unknown	gnl\|CDD\|377682
NZ_CP009164.1\|WP_038760037.1\|2337088_2337646_+\|DUF3005-domain-containing-protein	unknown	unknown	gnl\|CDD\|378664

Protein	Function_ID	Function_description	E-value
NZ_CP009164.1\|WP_004541992.1\|2339962_2340721_-\|DUF4397-domain-containing-protein	gnl\|CDD\|379570	pfam14344, DUF4397, Domain of unknown function (DUF4397). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 120 amino acids in length.	3.42152e-26
NZ_CP009164.1\|WP_011853920.1\|2339007_2339904_-\|manganese-catalase-family-protein	gnl\|CDD\|226076	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism].	1.63589e-108
NZ_CP009164.1\|WP_004529429.1\|2342936_2343125_+\|DUF3008-family-protein	gnl\|CDD\|314387	pfam11450, DUF3008, Protein of unknwon function (DUF3008). This is a bacterial family of uncharacterized proteins.	1.17203e-13
NZ_CP009164.1\|WP_004541952.1\|2343410_2343797_+\|DUF3022-domain-containing-protein	gnl\|CDD\|378603	pfam11226, DUF3022, Protein of unknown function (DUF3022). This family of proteins with unknown function appears to be restricted to Proteobacteria.	2.6106e-33
NZ_CP009164.1\|WP_038760363.1\|2341395_2342871_+\|RNA-polymerase-factor-sigma-54	gnl\|CDD\|237109	PRK12469, PRK12469, RNA polymerase factor sigma-54; Provisional.	0
NZ_CP009164.1\|WP_004523343.1\|2343932_2346059_+\|catalase-HPII	gnl\|CDD\|236886	PRK11249, katE, hydroperoxidase II; Provisional.	0
NZ_CP009164.1\|WP_004523342.1\|2343169_2343331_+\|DUF1328-domain-containing-protein	gnl\|CDD\|227774	COG5487, COG5487, Small integral membrane protein [Function unknown].	0.00075118
NZ_CP009164.1\|WP_038760365.1\|2346666_2347764_+\|Ku-protein	gnl\|CDD\|274290	TIGR02772, conserved_hypothetical_protein, Ku protein, prokaryotic. Members of this protein family are Ku proteins of non-homologous end joining (NHEJ) DNA repair in bacteria and in at least one member of the archaea (Archaeoglobus fulgidus). Most members are encoded by a gene adjacent to the gene for the DNA ligase that completes the repair. The NHEJ system is broadly but rather sparsely distributed, being present in about one fifth of the first 250 completed prokarytotic genomes. A few species (e.g. Archaeoglobus fulgidus and Bradyrhizobium japonicum) have multiple copies that appear to represent recent paralogous family expansion. [DNA metabolism, DNA replication, recombination, and repair].	4.12495e-123
NZ_CP009164.1\|WP_004552253.1\|2334181_2335039_+\|MipA/OmpV-family-protein	gnl\|CDD\|377682	pfam06629, MipA, MltA-interacting protein MipA. This family consists of several bacterial MltA-interacting protein (MipA) like sequences. As well as interacting with the membrane-bound lytic transglycosylase MltA, MipA is known to bind to PBP1B, a bifunctional murein transglycosylase/transpeptidase. MipA is considered to be a structural protein mediating the assembly of MltA to PBP1B into a complex.	9.39837e-51
NZ_CP009164.1\|WP_028201486.1\|2338110_2338620_+\|ferritin-like-domain-containing-protein	gnl\|CDD\|377580	pfam05974, DUF892, Domain of unknown function (DUF892). This family consists of several hypothetical bacterial proteins of unknown function.	3.60158e-48
NZ_CP009164.1\|WP_038760037.1\|2337088_2337646_+\|DUF3005-domain-containing-protein	gnl\|CDD\|378664	pfam11448, DUF3005, Protein of unknown function (DUF3005). This is a bacterial family of uncharacterized proteins.	5.40868e-52
NZ_CP009164.1\|WP_004523344.1\|2346081_2346585_+\|DUF421-domain-containing-protein	gnl\|CDD\|225205	COG2323, COG2323, Predicted membrane protein [Function unknown].	3.63901e-31

>NZ_CP009164.1|WP_038760037.1|2337088_2337646_+|DUF3005-domain-containing-protein
MQNAESNPTPQKQREIAAKSPVKTPAAGRDMPDAATQEKETRAHERKLTAEAIAGKTPTGLPPIDVDQYASGDGDPVRRAASRIVTLDNANMAATDNTVDVDGKGLEARTGASEWHDNVIYSNVSLDEAVDTPDDSLAGIESRPHGYRPEVEPSEGWRVVYLGTVDIEHTLGARTEHKFSFERST
>NZ_CP009164.1|WP_004542031.1|2336518_2336863_+|hypothetical-protein
MKKYLAIMAAVAIVLGGCATKNYGRMGNLTDYERNTMDCREINLEIARVDGFLSHVDEESEFDGRSVLSFLGDFGIGNVLEKDAAKKSARDRRQALDALRAAKQCGYATTGAPL
>NZ_CP009164.1|WP_004553960.1|2335718_2336069_-|hypothetical-protein
MHIKSAATFVSLVLFLHGCTSIDIDQLASHQHDQDENRCRNYGYQIGTNKFADCMMLLDQERRSAAIAEDENDERLKSLSIMRNNDERFPVCVPTMPNVKLDVPNHSWYGPNCRER
>NZ_CP009164.1|WP_004552253.1|2334181_2335039_+|MipA/OmpV-family-protein
MRDAAARRRTARGIVCAACAAAAVSAHAQTPSPLGEWQYSAGVPLDKLFNPNPQTWQISVGAAATLQPRYDGSNQYRPMAGPTFDARYRDLWFVSTGEGIGVNVLRGPNWRATLSAGYDLGRREADDRGHLTGIGNINPAAVIKLSADYVISHAFPLVLRADVRRSVGGANGWVADLAAYMPLPGSSETFYWFAGPTVTFADSRYMNSWFGVNDAQAARSGHPRYAPSAGVKSFGGGMTLVWFVTKHWFVTADGAIEQLVGSAARSPLTQRSTNAVVDVSINYQF
>NZ_CP009164.1|WP_004523336.1|2333488_2333785_+|lipoprotein
MTIRRISTKLAGVAAMALTAACSQNGPYGGSPRAGSTGGTITDGVNQPPAAVTPSDGARYGSPGYHGAQPMAPGGDVGDGNGAGTGSMPAPGAPGSSD
>NZ_CP009164.1|WP_004552255.1|2333140_2333452_+|hypothetical-protein
MTIRIEPGDKREIAETLGRYFEARSIPFHIEEHPADVLHIGFHADGHPAAVTVTFDEDAFAAFAQWDIEQKRLALRRLADEFAEMMAQRSPTAHAGDLHINRF
>NZ_CP009164.1|WP_004523334.1|2332520_2332790_+|hypothetical-protein
MHPDVLFHRPYPPIPDPEYVPPDPDEDDDNPVDPPEPYRHPEGDPPPPEPPVHARLAPRGRRGGRLTAAACVCRRTLAHLRGDGRVHCE
>NZ_CP009164.1|WP_004529441.1|2331017_2331317_+|hypothetical-protein
METPKSTVHYESNVCGGSFESVLDRFGNWKREPLVYRPERRMFEGKDSVRRLGDEAFDSPDKARRALIRSCAPRDRFALAAPICDDDHQMWLVMAAFEA
>NZ_CP009164.1|WP_004529443.1|2330476_2330725_-|hypothetical-protein
MTQHSQRQPTPRAPNSPPMKDKDEIRTHRSEDRIDKALEDTFPASDPPATGGVTRVDPSKPTRGDRPHGPAHDTHRRDDAKH
>NZ_CP009164.1|WP_004529446.1|2329115_2329760_+|hypothetical-protein
MHHEPETSLPILAAPIRAALHPVIDEVVHRSVSEATTKDGYMRCADYAIVGARVLSMLTGVRYRPVAGGEVMDFGGGNLFALCSTRERRRAARHLSQLARYHCWIEARHTDADGRARTEVIDFTMRHDARVASMVGMPFTGSRGTYWWGWDDEHIVPAELRDHPAFAKQGPRWRWAERECTVLLRAYERERPNYFGRQVSRALHLLADRIERDV
>NZ_CP009164.1|WP_028201486.1|2338110_2338620_+|ferritin-like-domain-containing-protein
MTTPQEHLEDWLRDAYAMERHVETMLKAQAARLDNYPVLRDRIQQHVEETLEQQRLLESCLQRLDTSPSAIKDLAARAAAYGQAASGLFVADEVVKGAMAGYVFEHVEIASYKTLIAAAQLAGENEIRDCCERILKQEVDMAEWMSQHLPDIAVAFLERSAAERRDAKR
>NZ_CP009164.1|WP_011853920.1|2339007_2339904_-|manganese-catalase-family-protein
MFFHNKRLQYTVRVAETNPGLANLLLEQFGGPQGELAAAMRYFTQAIAEEDAGRKDMLYDIATEELSHLEIIGSIVAMLNRGAKGELAEAVDEQAQLYRKLNGGGNDSHVTQLLYGAGAPLVNSGAVPWTAAYVDTIGEPTADLRSNIAAEARAKIIYERLINVTDDPGIRDALGFLMTREVSHQKSFEKALYSITPNFPPGKLPAVPEYADLYYAMSDGGGARRKFPWNDGHDLRLVEHPPVPADGGDGKATVALDGDESTTLEAMRHRLKSDPSSDPTTGADLGSGGPDKPRDFPT
>NZ_CP009164.1|WP_004541992.1|2339962_2340721_-|DUF4397-domain-containing-protein
MKPIRTVAALISAVALVAACGGDDTGTELGISNPQARFINAVPAGPSLDYYLNAQANATGIAYKGVTRYRSVGSGSQTASYDVTGTSVTIASQTFNAANGHHYTTIAIPSTSTPISVIDDPFAKGLLSDQARVRGFNASPNAQNVDIYVVPPGTNIAAQSPTLAGAAYQNAVPASGQDSIYLSGGTYQVIVTLPGSKTPILTTPPVSIANNADWLLLTIPAGGVADVVPNDIHVLVAQGNDADTSAQELGPQ
>NZ_CP009164.1|WP_038760363.1|2341395_2342871_+|RNA-polymerase-factor-sigma-54
MSATLALQMRQHLALTPRLQQSLRLLQLSSLEFQQELRQALDTNPFLEDVQSPDDDAAEAAPKPGETPAADANARADDGYAERDEGPFATDASPPAGQDVPMTAELSARGSSRRSDDASDLEPGDWMTAEPTLHEHLHDALRLCQLTRRDRTLARMIIDALDDDGYLRQALPELAAAADPLLHPAEQELLVALRLVQSLDQPGIGARTLSECLLLQLDAMPADTPGVECAKEIAAHHLERLARRETAEMQRRIGCDTHTLRIACALVRRLDPRPGNQYGSTAGNYVVPDVIVRQVRNDWLVTINPAVMPRARIHRRYAELFAQSSGSNQSPLGQQLQEARWLIRNAQKRFDTIRRVGECIVERQRDFFRYGEIALKPLVLRDIADELGLHESTISRATGNKYMSTPHGTFEFKHFFPRKLEAAGKGACSAAVARVLIRDMIAAEQAIDPLSDVALAQRLAGRGIVLARRTVTKYRQAMKIPPAELRRRAPL
>NZ_CP009164.1|WP_004529429.1|2342936_2343125_+|DUF3008-family-protein
MPAKSQAQQRAAGAALSAKRGRTKASELKRPSKSMYSSMSEKELEKLAGTKTRDKPKHKSKS
>NZ_CP009164.1|WP_004523342.1|2343169_2343331_+|DUF1328-domain-containing-protein
MLRYALIFFIIAIIAAVLGFGGIAAGAAEIAKILFYIFVVIFLVTLVLGVARR
>NZ_CP009164.1|WP_004541952.1|2343410_2343797_+|DUF3022-domain-containing-protein
MTLPTDLPQRLVEIEHLLSDCFASPSTTVLHVDDSSGRLTIQVSWVAARAASSLLEARCALNLVFEPNVLRRYGRLDAAARARVRERLAALARQTVDAARPVEGSEADACNATLPVTDALLDDALRGG
>NZ_CP009164.1|WP_004523343.1|2343932_2346059_+|catalase-HPII
MADSDRNAPHETPRAAQPDDARADRKSQDLEPYRSKPQGEALRTNQGVRIADDQNTLRAGARGPSLLEDFIMREKITHFDHERIPERVVHARGSAAHGVFRVYESMAEYTKAAFLQDPAKETPVYVRFSTVQGPRGSADTVRDVRGFAVKFYTDEGNYDLVGNNMPVFFIQDAIKFPDFVHAVKPEAPNEMPTGASAHDTFWDFVSLVPESAHMVAWLMSDRAIPRSFRTMEGFGVHTFRFVNAQGVARFVKLHWRPVLGSYSLLWDEAQKIAGHDPDFHRRDLWEAIERGDYPEYELGVQIIEARDQHAFGFDLLDPTKLIPEETVPVKLIGKMTLNRNPDNFFAETEQVAFHPGHLVPGIDFTDDPLLQGRLFSYTDTQLSRLGGPNFHELPINRPVCPFANLQRDAMHRQTIDVGQASYEPNSLNGGWPKETDPAGRDGGFDSYPETVEGAKVRVRSGSFADHFSQAALFYQSMSDVERRHIRDAYRFELGKVTRPEIRARVVDEILARFDAGLAAEVAEGLGLPPPPASAPAIVAQPLSPALSLLTRGKRSVRSRKVALVATPGADTRLIERVRRALTDARAVPVLVAPTLARIGELTPEATLAGMPSVMFDAVFVCGGDGDGRDLVHSSDARHFLQEAFKHLKAIAAVGSGRQLLGAAHLPEQGDGVCVGHAADLDQVVAKFFDALSEHRVWSREPLAQGVPA
>NZ_CP009164.1|WP_004523344.1|2346081_2346585_+|DUF421-domain-containing-protein
MDAVLAFFAPLFGSGAPLGAPQMAARAAAAFFIALALIRIAGRRSFGQRSPFDYVVGILLGATLSRAIVGVSPFWPTVAASLAIVLLHRALAWACVRSARLERFFVGAQRELYRNGRFDEAQMSAALITMTDIYESVRQKTGECDLSGVAAAILERNGHVSIIRRKS
>NZ_CP009164.1|WP_038760365.1|2346666_2347764_+|Ku-protein
MARMIWKGAISFGLVHVPVQLYPATRTVKPSFRLLDKRSLDPVGYRQINKRTGKAVPREDIVRGYEYEKERYVILTDEEIRAANPESTQTVDILTFVDDEAVSFLYLDTPYYLVPDRGGEKVYALLRDALKRSGKIGIALVVMRDRQHLGAVIPVGPLLALDTLRWQDELRPLAEIDAPAADAKKAGVSAREFEMAAKLIDDMSGDWSPDDYHDTFRDDILALVDRKVREGRVEEIAQEDTAPARRTADIVDLTELLKRSLGRAKGPRRAPDGGANERGDSGEGGEGGGRGGGELARELERSVGGTRGGRGGGRKKAEPHASPRKRAQAAATKRGKQAKPRDGASRASARTAAKKPAAARKRRAA

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Crispr_ID: NZ_CP009164_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009164_5

2715760-2715852

Orphan

Consensus_repeat	Method
TCGCCGCCGCGCGCGACGACGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009164_5

>merge|NZ_CP009164|5|2715760-2715852|CRISPRCasFinder
TCGCCGCCGCGCGCGACGACGCGCTGAAGGACGCGCTCGCGCAGGCCGCCGCCGAGCGCGAGCGGCTGATCGCCGCCGCGCGCGCCGACGCGC

>NZ_CP009164|5|4|2715760-2715852|CRISPRCasFinder
TCGCCGCCGCGCGCGACGACGCGC	TGAAGGACGCGCTCGCGCAGGCCGCCGCCGAGCGCGAGCGGCTGA
TCGCCGCCGCGCGCGCCGACGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009164.1\|WP_004544573.1\|2725946_2727071_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NZ_CP009164.1\|WP_004188221.1\|2713353_2713809_+\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|184057
NZ_CP009164.1\|WP_038728004.1\|2711777_2713364_+\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|183615
NZ_CP009164.1\|WP_038753816.1\|2709623_2711417_-\|polyhydroxyalkanoic-acid-synthase	unknown	unknown	gnl\|CDD\|213656
NZ_CP009164.1\|WP_038753797.1\|2723961_2725797_-\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_CP009164.1\|WP_162483150.1\|2704715_2706233_+\|hexose-kinase	unknown	unknown	gnl\|CDD\|238570
NZ_CP009164.1\|WP_004524990.1\|2722040_2723606_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185008
NZ_CP009164.1\|WP_038759039.1\|2714289_2714598_+\|membrane-protein	unknown	unknown	gnl\|CDD\|274462
NZ_CP009164.1\|WP_038759041.1\|2716287_2718276_+\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183987
NZ_CP009164.1\|WP_004524995.1\|2730282_2731356_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|235136
NZ_CP009164.1\|WP_004188438.1\|2713805_2714297_+\|AtpZ/AtpI-family-protein	unknown	unknown	gnl\|CDD\|378198
NZ_CP009164.1\|WP_004187346.1\|2714594_2715296_+\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|237383
NZ_CP009164.1\|WP_038750404.1\|2720417_2720933_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009164.1\|WP_038761138.1\|2720990_2721500_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009164.1\|WP_004529184.1\|2707034_2708213_-\|acetate/propionate-family-kinase	unknown	unknown	gnl\|CDD\|235922
NZ_CP009164.1\|WP_038761136.1\|2727073_2730286_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP009164.1\|WP_038759043.1\|2718272_2719121_+\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|376304
NZ_CP009164.1\|WP_004187193.1\|2715292_2715541_+\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|184067
NZ_CP009164.1\|WP_004529178.1\|2719327_2720353_+\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|176257
NZ_CP009164.1\|WP_004524980.1\|2708209_2709613_-\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236180

Protein	Function_ID	Function_description	E-value
NZ_CP009164.1\|WP_004544573.1\|2725946_2727071_-\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	1.21198e-25
NZ_CP009164.1\|WP_004188221.1\|2713353_2713809_+\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|184057	PRK13447, PRK13447, F0F1 ATP synthase subunit epsilon; Provisional.	4.44077e-63
NZ_CP009164.1\|WP_038728004.1\|2711777_2713364_+\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|183615	PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.	0
NZ_CP009164.1\|WP_038753816.1\|2709623_2711417_-\|polyhydroxyalkanoic-acid-synthase	gnl\|CDD\|213656	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis].	2.19289e-178
NZ_CP009164.1\|WP_038753797.1\|2723961_2725797_-\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	2.75967e-132
NZ_CP009164.1\|WP_162483150.1\|2704715_2706233_+\|hexose-kinase	gnl\|CDD\|238570	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.	6.99431e-109
NZ_CP009164.1\|WP_004524990.1\|2722040_2723606_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	2.47951e-79
NZ_CP009164.1\|WP_038759039.1\|2714289_2714598_+\|membrane-protein	gnl\|CDD\|274462	TIGR03165, F1F0_chp_2, F1/F0 ATPase, Methanosarcina type, subunit 2. Members of this protein family are uncharacterized, highly hydrophobic proteins encoded in the middle of apparent F1/F0 ATPase operons. We note, however, that this protein is both broadly and sparsely distributed. It is found in about only about two percent of microbial genomes sequenced, with the first ten examples found coming from the Euryarchaeota, Chlorobia, Betaproteobacteria, Deltaproteobacteria, and Planctomycetes. In most of these species, surrounding operon appears to represent a second F1/F0 ATPase system, and the member proteins belong to subfamilies with the same phylogenetic distribution as the current protein family.	1.16351e-09
NZ_CP009164.1\|WP_038759041.1\|2716287_2718276_+\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|183987	PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.	0
NZ_CP009164.1\|WP_004524995.1\|2730282_2731356_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	1.83012e-39
NZ_CP009164.1\|WP_004188438.1\|2713805_2714297_+\|AtpZ/AtpI-family-protein	gnl\|CDD\|378198	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophobic stretches and is presumed to be a subunit of the enzyme. It carries two transmembrane helices and is a magnesium or calcium uniporter. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI.	7.77353e-17
NZ_CP009164.1\|WP_004187346.1\|2714594_2715296_+\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|237383	PRK13421, PRK13421, F0F1 ATP synthase subunit A; Provisional.	1.54059e-122
NZ_CP009164.1\|WP_004529184.1\|2707034_2708213_-\|acetate/propionate-family-kinase	gnl\|CDD\|235922	PRK07058, PRK07058, acetate/propionate family kinase.	0
NZ_CP009164.1\|WP_038761136.1\|2727073_2730286_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.85043e-92
NZ_CP009164.1\|WP_038759043.1\|2718272_2719121_+\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|376304	pfam00231, ATP-synt, ATP synthase.	3.06374e-34
NZ_CP009164.1\|WP_004187193.1\|2715292_2715541_+\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|184067	PRK13468, PRK13468, F0F1 ATP synthase subunit C; Provisional.	4.45015e-37
NZ_CP009164.1\|WP_004529178.1\|2719327_2720353_+\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|176257	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP009164.1\|WP_004524980.1\|2708209_2709613_-\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	gnl\|CDD\|236180	PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated.	0

>NZ_CP009164.1|WP_004187193.1|2715292_2715541_+|F0F1-ATP-synthase-subunit-C
MNNLIEVVSIAAAALAVSFGAIGPALAEGRAVGAAMDAIARQPDASGTVSRTLFVGLAMIETMAIYCLVVALLLLFANPFVK
>NZ_CP009164.1|WP_004187346.1|2714594_2715296_+|F0F1-ATP-synthase-subunit-A
MNASPLSTVPLFSVGPVGISAPVLATWAIMAVLVALALVARRRLSVDAPSRLQSVLELFVATVDAQIADTMQTPPARYRALIGTIFVLVFCANGASLVPGVEPPTAHLETDAALALVVLAATLYYGVRARGVRGYLATFAEPTWVMIPLNVVEQLTRTFSLIVRLFGNVMSGVFVIGIVLSLAGLFVPIPLMALDLLTGTVQAYIFMVLSMVFIGAAVSGDETSAPRRGQENT
>NZ_CP009164.1|WP_038759039.1|2714289_2714598_+|membrane-protein
MIEMWETARALFDGIAAAIGLALGFAAGACHFVSLGWNSRLFVAGRAGVALALQLARVALAVAVLVVLARAGFGMLVAGSAGFFAARAIAVRRAAALTGARR
>NZ_CP009164.1|WP_004188438.1|2713805_2714297_+|AtpZ/AtpI-family-protein
MMKRRPPEVKREARDDAARGDARHAGAGAAPDDPRGAARRDPSPGSRAARGGATHPAARAAEPAAPKPAADRVERAAHTAAARAARGARDPEPSLGRRLAQIGVLGWTIVAPTLAALALGRWLDRMFATRVFFSAPLLMLGAALGLWLAWRWMKAQQHGDRDD
>NZ_CP009164.1|WP_004188221.1|2713353_2713809_+|F0F1-ATP-synthase-subunit-epsilon
MGAELRVTIATPARVCVDDLPIVSLRAEDASGAFGIRAGHVDFVTLLRASVVRWRTADGATHYAALDGGVLRVTRGARIEIACRDAVLGESLAELEAVVRGVRATQLDEKRRARVDETRLHAQAVRRLLTYLRPEHAKDGVHAPLKPETLE
>NZ_CP009164.1|WP_038728004.1|2711777_2713364_+|F0F1-ATP-synthase-subunit-beta
MADPQATNGTGAACAERDASDVGDARDEGAGRVVAVRGAVVDVAFDGGALPALNEALTIPVDGAAPILAEVHAHLSDAAVRALALGPTGGLRRGAAVRATGGPIRVPVGDAVLGRLLSVTGAPGDDGAALAADVERRPIHRGAPPLAEQKSANALFATGIKVIDLLAPLAQGGKAAMFGGAGVGKTVLVMELIHAMVERYRGISVFAGIGERSREGHEMLLDMRGSGVLGRTVLVYGQMNEPPGARWRVPLTALAIAEYFRDERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIASVEGAAVTAIEAVYVPADDFTDPAVTAIAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVGEAHVEVAIEVRRVIEHYRELQDVIALLGIDELGADDRRLVGRARRLQRFLTQPFAVTEAFTGQAGASVEIADTIAGCRAILRGDCDDWRESSLYMVGTLDDARRKEAAAREADARREAAAAASGAGPGTTSDPASGSAEPQGARHGR
>NZ_CP009164.1|WP_038753816.1|2709623_2711417_-|polyhydroxyalkanoic-acid-synthase
MDTRHAPESGAPDAPLPAHPPASYAPESPYRIFDLAKEASVAKLTSGLSPASLQLALADWLIHLAAAPGKRAELATLALRHAALLGQYLLEAATGRTPAAPAQPSPGDRRFRAGAWQLEPYRFWHQSFLLAEQWWRAATRDVPGVSPHHEDVVAFSARQMLDTFAPANYVATNPEIAQRTALTGGANLAQGVWNYLDDVRRLITKQPPAGAEQFELGRNLATTPGRVVFRNHLIELLQYSPTTPDVYAQPVLIVPAWIMKYYILDLSAHNSLIRYLVGEGHTVFCISWRNVDASDRDLSLDDYRKLGVMDALDTIGAIVPGEKIHATGYCLGGTLLSIAAAAMANTGDDRLASVTLLAAQTDFAEPGELQLFIDDSEIHFLESMMWERGYLGAHQMAGSFQLLMSNDLIWSRVIHDYLLGERTPMIDLMAWNADSTRMPYRMHSEYLRHLFLDNDLATNRYVIDGQTVSVHNIRAPFFVVGTEHDHIAPWRSVYKIHYLSGSDVTFALTAGGHNAGIVSEPGHAKRHYRMKMTAAAAPSISPDEWLAGATDFEGSWWPAWHAWLARHSSPQRVAPPPLGKPGAHTLGDAPGTYVFQK
>NZ_CP009164.1|WP_004524980.1|2708209_2709613_-|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase
MDREILQNRPFDSLAIGDSASLVRTASRDDIDLFAAMSGDVNPAHLDAAFAAHDLFGHVVVHGMWTGALVSAVLGTKLPGPGTIYLDQTLEFRHPVAPGDTITATVTVAEKRPEKRIVLLDTRCTNQDGHVVLRGTATVIAPDTPITWERVPGPEVAVRRHDRYETFVRDAREQPPLRTAIVHPCSPDALRAAIDARDANLIEPILIGPQAKIRAIADAAGVDLAGVPIEAVEHSHAAAARAVEMGGAGEVAALMKGSLHTDELLAAVIGPASRLRTERRISHVYAMDVPAYPKPLLITDAAINIAPTLEQKRDICQNAVDLLHVLGVERPRVAVLAAVETVNPKMPSTLDAAALTVMAARGQIAGAIVDGPLAFDNAVSAVAAMSKGIASPVAGDADVLLVPDLEAGNMLAKQLMYFAGADAAGLVLGARLPIILTSRADSLRVRIASAALAKLVAERTRAGALAS
>NZ_CP009164.1|WP_004529184.1|2707034_2708213_-|acetate/propionate-family-kinase
MSEPLLLTFNAGSSTLKIGLYSVANGEPAPLGRGKIDFNRAPLQFEYANGGEAHAVPLAAPVTDDLHAVLDEALGWIDAHLSVHELVSVGHRVVHGGDTFDGPVRIDERTLDAIAALVPLAPLHQPQSVRLIRALRHLRPHLPQVASFDTAFHRTQSDLVRRFALPRALFDAGIKRYGFHGLSYRYVAGRLRERHPSIARGKVVAAHLGSGASLCALDAGVSRDTSMGFSTLDGIPMATRCGALDAGVVLHLQKTLGRTLDDVEQMLYHRSGLLGVSGVSGDARALLADPSAGARDALELFAFRIAGETARLAATLGGLDALVFTAGIGEHQPQTRAAVCERLRWLGVELDAHANARNAETVSRDGSRVAVLVVPTDEEQVIARDAASVLHA
>NZ_CP009164.1|WP_162483150.1|2704715_2706233_+|hexose-kinase
MRGACASRAMFDTGGKRQAASGKRQAASGKRQAASGKRQAASGKRQAASGKRQAASGKRQAASGKRQAASGKRQAASGKRQAASGKRQAASGKRQAASGKRQAASGKQQAASSKQQAASSKQQAASSKQQAASSKQQAASSSRSSPGLMVRRRIERKHCGACPPRSTREPRTRASRCVVFPSRIPTLKPNVTMPEIVTLTPNPAIDVATCVERVTDTRKLRCGPARRDPGGGGINVARVLTRLGADCSAVYLAGGGTGLALRGLLADEGVRAHGIDIAGETRENFSVLETSTGREFRFVLPGPALAAHEWPRCVEALGRLADASRYLVMSGSLPPGMPDDCYARLARRASARGVRTVVDTSGPALAAALDAGVYLVKPSLGELRALTGLPLEDDGARLAAARAIVAGGRAQIVALTLGDAGALVVSRDDAVRLPGVKVAVRSAIGAGDSFVAGLVAALNRGANVADAARHALAAASASLLSTGTALGTKEDIARIYRELPGTIDA
>NZ_CP009164.1|WP_038759041.1|2716287_2718276_+|F0F1-ATP-synthase-subunit-alpha
MTPTPDAPAAADAATGAGWLARRRGALARVALAPVAQAIGRVERVADGIAFVSGLKDTMLNEVLRFEGGVTGFAHTLDEDLISVVLLDPDAGVRAQTAVARTGAVLEVPAGPQLLGRVVDPLGRPLDGGAPLDAAHTLPIERAAPAIIERDLVSEPLDTGVLIVDALFTIGRGQRELIIGDRATGKTSLAIDAIVNQRHSDVICVYVAIGQRASAVRRVIDAVRRYGAPERCVFVVAPAACAPGLQWIAPFAGFSIAEYFRDRGQHALVVVDDLTKHAATHRELALLTREPPGREAYPGDIFYVHARLLERAAKLSAALGGGSLSALPIAETDAGNLAAYIPTNLISITDGQIVLDSALFAANQRPAVDVGLSVSRVGGKAQHPALRAASGRLRLDYAQFLELEAFTRFGGLTDARLRAQITRGERIRALITQPRFRALRTLDEVVLLKALAAGALDAMSPDLVAPLRERLPAWLDARIAALTPALAPPRDWLADDAALDALAESVGELIERIAADAARRATAGMPAEDAAGDIGGAFGGEQARGDADRDADHGANREVSPEASREVSREVSHEADRDAAADAARVAGRAPGRAEPDRAAPRAMPDGPPRAQADGDRASASRPRPDARGDAARTAPSPQGGAETNVNADANVDAEAEARHKR
>NZ_CP009164.1|WP_038759043.1|2718272_2719121_+|F0F1-ATP-synthase-subunit-gamma
MSDKLAAIEARTDTARQLQTVIGAMQGVAAARAHEAQQRLPGIRASAATVGAAIGDALSAGARSGDTAAGARAAPRARLVIVLCSEQGFVGAYNAQLIEHATRPEPSVSREYMMVGSRGAMLADAGGVPLVWRTPMAARADDVVHLANRITDALYAHLAKRGAQPVSIVHAMPGGAARLEVTERRLLPFDYARFDTAPRAQPPLVHLPPATLLAELAQAYVFVELCEAAMLAFAAENEARTRAMIAARESVERALGDLLQAYRIARQDEITADIVELAASGL
>NZ_CP009164.1|WP_004529178.1|2719327_2720353_+|alcohol-dehydrogenase-AdhP
MAQYMKAAVVHAFGEPLRIEEVPVPTPGAGQILVNVKASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGFVAAVGEGVRHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVNGSYAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVTDTRPGQWIAISGIGGLGHVAVQYAKAMGLHVVAVDVAPQKLELARKLGAAFVVDASKDDPAAVIQKEIGGVHGVLVTAVSRGAFAQALGMVRRGGTVSLNGLPPGDFPLPIFSTVLNGITVRGSIVGTRRDLQESLDFAAEGLVRAHIHRDKLEHINGVFSALREGKVDGRIVLTGQ
>NZ_CP009164.1|WP_038750404.1|2720417_2720933_+|hypothetical-protein
MRRAMRGAGRASPSRARRYENVSKEPNTHREAGAPVHRYRLQVRNMNGECRTYELRLSSLDDGYTLEIDEWLNFPDTHLGDVTPVHVSRPVQFAVPAHEFYRRRRAFRTELIESVAAALRAGEVVRMRDSPDEYPGGHAGNPWVNWIRADLRANPGGRPRPVGDDMQDLIH
>NZ_CP009164.1|WP_038761138.1|2720990_2721500_-|hypothetical-protein
MRRIYFLLPDADTARAIVDELLLKRIEWRHIHVVANDRVPLENLPEASIAQSSDLLPALARGTAAGGVTGALAGLAAIAFPPAGLTIADGAVVAFAIAGAGFGAWVGTMIGVSVPNTRLKHFEDAVDNGELLMMIDVHRDRVEEIEALVKQHHPNAHLEGTDPTIPAFP
>NZ_CP009164.1|WP_004524990.1|2722040_2723606_+|methyl-accepting-chemotaxis-protein
MPTLSFRQKLWLPLVISLIALLLVSISSAWLSYQTRMEERRNDLTNVAHVGLSIVREYAALAQRGVLTDAQARKEALERLRSVRYGSDGYFIVIDSSPRMIMHPIKPDTVGKDLRHVADADGRHHYLTFASVAQSPQGGFVDYVFAHPNAHPAKAVDKLGYVIRYAPWDWIISTGAYIDDIQAAFAKSLCLSAGVFALLAALLALSVVYTNRGIERMIGGDPRIAAHMAGVIASGDLATPFATRREDRSSLMFAISQMRDALANAVAQIRASAGYVATTAGEIADSNMDLSSHTECQATALQQAASSMQRLTERVRDTADRARAASELAGSAARITDRGGDMVVRVVAAMNDIRAESRKMVDIIGVIEGIAFQTNILALNAAVEAARAGNEGRGFAVVASEVRVLAQRSASAAKDIRALIGRAAERVGNGAELVEATGATIGEAQHAICRVTGIVQDIAAAATDQSQGLEQINAAVSQMDSVTRRNATLVEHAAIAAQSLNEQSRCLQDAVAAFRTEALGC
>NZ_CP009164.1|WP_038753797.1|2723961_2725797_-|response-regulator
MHVEVFAQHPSCPGWHGEMARRIRAFDWSATELGPLERWPASLVAAVRTVLASPVPLVMLWGSSGYMLYNDAYAAFAGGRHPYLLGQPVELGWPEVADFNRNVMRTCLAGGALSYRDKALVLLRNGRPEEVWMDLYYSPLAGDDGAPAGVLAVVVETTERVLAARHRDRAKAALHETNAELRRLTETLEQRVADAITERASIEEQLRQAQKMEAIGSLTGGIAHDFNNVLQVVSSNLQMLSAELGEDARAQRRIASAANAVARGAQLASHLLAFARRQPLAPAVLEPRGLIDGMREMLHRALGESVHVDADLRDDVWNVLADRHQFENALLNLAINARDAMRGEGTLKITACNIVLEAGRHARRNGLPPGEYVAFDIADNGVGMTPDILERVFEPFFTTKPDGQGTGLGLSMVFGFVKQSGGHTSIESAPGRGTTVRLLLPRCREAPAGEPAAQRRLPAEGGRETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIKGGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVLDAHASARRAHGARHAQADPRKKTAAARVQR
>NZ_CP009164.1|WP_004544573.1|2725946_2727071_-|ABC-transporter-permease
MRRLAIVYRLGVKELWSLVRDPILLVLIAYTFTASIYSAATARPDTLHMAPIAIIDEDASPLSARIASAFFPPQFALPRMVTLAEADRGMNAGDFTFALDIPPNFQRDVLAGRPAQIQLNVDATRMSQAFTGNGYVQQIVSGEIDDFARRYRANTAPPVDIAMHMRFNPNLDQTWFGSLMEVINNVTLLSMVLTGAALIREREHGTIEHLLVMPVTPGEIMLAKVWSMGLVVACAAAFSLAFVVRGALHVPIEGSVALFVIGMAIHLFATTSMGIFLATLVRSMPQFGMLLVLVLLPLQLLSGSLTPRESMPFAVQNIMLAAPTTHFVEIGQAILYRGAGIETVWRQFLILAVIGTALFLLSLKRFRKTIGQMA
>NZ_CP009164.1|WP_038761136.1|2727073_2730286_-|ATP-binding-cassette-domain-containing-protein
MSAPSVVRFSDVSLRYGKTVALERITLEIPAGLTIGLIGPDGVGKSSLLALAAGARALQTGAVDALGGDMRSRRHRERVCRRIAYMPQGLGKNLYPTLSVEENLQFFARLFGHDADERRRRIDALTRSTGLFAFLSRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLARAQFWDLIARIRSERPAMSVIVATAYMDEAQRFDWLIAMDAGRVLATGAPAELLARTGCDSLEAAFIALLPEDERRGHKPVTLEPLRADAQTGTAIEARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPATEGTAQLFGKTVDPKDINTRRRVGYMSQAFSLYSELTVRQNLVLHARLFGVPAAEIDARVDEMARRFGLADIYDMLPDSLPLGMRQRLSLAVAMVHKPELLILDEPTSGVDPVARDSFWQLMIDLARRDRVTIFISTHFMNEAQRCDRISLMHAGRVLASDAPAALVRACGAATLEEAFIGYLVDASAQEAQGGAGGRPGAGERAAGESLAGRGAATDGDADGAHARPAAYANGAAQHRAPDADAAGTDVAAETGARDDARTAHAAGHSAGNDVRATVGSEVGSDVGSDVGAESGSERGVAHGAERAREPAADAGAAIDVEPGASAESATAAVAPARHAESAATSPRAGNAPAGTPFAAAPPSHAAPAEPPHRAFSAQRALSYMWREMLELRRDPVRATLALIGSLVLMCVIGIGISLDVEDLTYAVLDRDQTELSHDYALNLSGSRYFVERPPIADYAALDRRMRDGELSLAIEIPPNFARDVERGAPAQIGMWIDGAMPQRAETIRGYAIGMHTMWLADKARHRLGVTLAPRAEVVTRYRYNPDVKSLPAMIPAVMPLLLLMLPAMLTALAVVRERELGSILNLYVTPVTRTEFLIGKQVPYVVLAMLNFLLMTMLARIAFDVPVKGSFMTLLLAVLIFNVVATGIGLLASTFTRSQVAAIVMTIIGTMIPTVQFAGLLTPLSSLEGTGRLIGLVYPATYMLSISRGVFNKALSLHDLYSQFWPLAACVPVILGATILLLKKQER
>NZ_CP009164.1|WP_004524995.1|2730282_2731356_-|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MIQVTRKQIVAAAAVVVVALGAYYGWTLLRHQGPGDGFASGNGRIEATEIDVATKLPGRIDAILVDEGDFVKAGQPLANMQIQVLRAQYDEATAQRQRALNTAAGVQSQVAQRKSDKAAAQAMVVLRESELDAAERRLARSQTLSREGASSLQELDDDRARARSAQAAVSAAAAQVAAAQAAIEATEAQLVAAHSAVTAADATVARVQADIDDSQLASPRDGRVQYRVAQPGEVLPAGGKVLNLVDLSDVYMTFFLPETVVGRVALGADARIILDAAPNYVIPATVSFVSSTAQFTPKTVETANERQKLMFRVKARIDRELLQKHLKLVKTGLPGVAWVRVDPSKPWPAQLMVKVPQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009164_3	3.1\|2266508\|24\|NZ_CP009164\|CRISPRCasFinder	2266508-2266531	24	NZ_CP044333	Methylocystis parvus strain BRCS2 plasmid unnamed2, complete sequence	45028-45051	2	0.917
NZ_CP009164_3	3.1\|2266508\|24\|NZ_CP009164\|CRISPRCasFinder	2266508-2266531	24	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	1469126-1469149	3	0.875
NZ_CP009164_3	3.1\|2266508\|24\|NZ_CP009164\|CRISPRCasFinder	2266508-2266531	24	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	413893-413916	3	0.875
NZ_CP009164_3	3.1\|2266508\|24\|NZ_CP009164\|CRISPRCasFinder	2266508-2266531	24	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	177400-177423	3	0.875

1. spacer 3.1|2266508|24|NZ_CP009164|CRISPRCasFinder matches to NZ_CP044333 (Methylocystis parvus strain BRCS2 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.917

gacagggcgcaccccggcgatcga	CRISPR spacer
gacagggcgcaccccagcgagcga	Protospacer
***************.**** ***

2. spacer 3.1|2266508|24|NZ_CP009164|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 3, identity: 0.875

gacagggcgcaccccggcgatcga	CRISPR spacer
gacatggcgcaccccggcgaacgc	Protospacer
**** *************** **

3. spacer 3.1|2266508|24|NZ_CP009164|CRISPRCasFinder matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 3, identity: 0.875

gacagggcgcaccccggcgatcga	CRISPR spacer
gacatggcgcaccccggcgatggt	Protospacer
**** **************** *

4. spacer 3.1|2266508|24|NZ_CP009164|CRISPRCasFinder matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 3, identity: 0.875

gacagggcgcaccccggcgatcga	CRISPR spacer
gacatggcgcaccccggcgatggt	Protospacer
**** **************** *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1613081 : 1623703

Burkholderia_virus(45.45%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004525420.1\|1613081_1613366_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.4e-10	50.0
WP_004549731.1\|1613349_1613619_-	BrnT family toxin	NA	NA	NA	NA
WP_038759296.1\|1614189_1614465_+	hypothetical protein	Q6JIH4	Burkholderia_virus	1.4e-42	97.8
WP_038759295.1\|1614741_1614963_+	hypothetical protein	NA	NA	NA	NA
WP_161788725.1\|1614929_1615229_+	hypothetical protein	Q6JIH9	Burkholderia_virus	2.3e-35	100.0
WP_004542548.1\|1615459_1616041_-	hypothetical protein	A9YX38	Burkholderia_phage	2.2e-21	100.0
WP_004537646.1\|1616296_1616446_+	bacteriophage protein Gp44	Q8W6Q6	Burkholderia_virus	3.3e-19	100.0
WP_004552308.1\|1618360_1618858_+	hypothetical protein	NA	NA	NA	NA
WP_004552310.1\|1619286_1619703_-	type II toxin-antitoxin system HicB family antitoxin	A0A0A8JBA5	Ralstonia_phage	7.2e-27	60.0
WP_009893919.1\|1619747_1619927_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	1.2e-18	74.6
WP_004552312.1\|1620673_1621201_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	2.8e-60	66.7
WP_004552313.1\|1621197_1621932_+	VRR-NUC domain-containing protein	A4JWV4	Burkholderia_virus	5.1e-52	50.5
WP_009893924.1\|1621941_1623057_+	DUF3396 domain-containing protein	E5E3X7	Burkholderia_phage	8.6e-176	80.4
WP_004552315.1\|1623127_1623703_-	recombinase family protein	A0A219Y9V9	Aeromonas_phage	1.0e-23	39.6

DBSCAN-SWA_2

2014262 : 2079997

Ralstonia_phage(33.33%)

holin,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004523686.1\|2014262_2014781_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004523687.1\|2014782_2016663_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_038759519.1\|2016659_2017709_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_038759521.1\|2017727_2018798_+	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_038725372.1\|2018852_2019881_+	fimbrial protein	NA	NA	NA	NA
WP_004553079.1\|2019913_2021272_+	hypothetical protein	A0A292GJ55	Xanthomonas_phage	1.5e-110	45.5
WP_038759523.1\|2021164_2024617_-	RHS repeat protein	NA	NA	NA	NA
WP_004523693.1\|2024629_2024899_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_038759525.1\|2024973_2027604_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	9.1e-35	26.0
WP_004529647.1\|2027701_2028271_-	hypothetical protein	NA	NA	NA	NA
WP_038759527.1\|2028429_2032338_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_038759529.1\|2032352_2033654_-	type VI secretion system protein TssL	NA	NA	NA	NA
WP_038734161.1\|2033650_2035000_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_144402317.1\|2035005_2035548_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004529642.1\|2035675_2036158_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004523699.1\|2036357_2037857_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004523700.1\|2037890_2038430_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004523701.1\|2038807_2040484_-	OmpA family protein	NA	NA	NA	NA
WP_038759533.1\|2040486_2041176_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004529637.1\|2041207_2041780_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_044583958.1\|2041772_2044517_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_004529635.1\|2044629_2045352_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_004523706.1\|2045431_2045977_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_076849341.1\|2046561_2047155_+	hypothetical protein	NA	NA	NA	NA
WP_038775249.1\|2047127_2047343_-	hypothetical protein	NA	NA	NA	NA
WP_038759536.1\|2047414_2048866_+	PhoPQ-regulated protein	NA	NA	NA	NA
WP_038759539.1\|2048932_2050870_-	YadA-like family protein	A0A2C9CZG8	Yersinia_phage	4.5e-07	46.1
WP_153260193.1\|2051718_2052078_+	hypothetical protein	NA	NA	NA	NA
WP_038759542.1\|2052422_2053880_+	hypothetical protein	NA	NA	NA	NA
WP_156890222.1\|2054154_2054733_-	hypothetical protein	NA	NA	NA	NA
WP_004523716.1\|2055030_2056626_+	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	1.9e-06	33.3
WP_038759544.1\|2056622_2057360_+	DUF2244 domain-containing protein	NA	NA	NA	NA
WP_038759545.1\|2057945_2058638_-	hypothetical protein	NA	NA	NA	NA
WP_004523720.1\|2059092_2059419_+	thioredoxin family protein	NA	NA	NA	NA
WP_004523721.1\|2059438_2059858_+	YjbQ family protein	NA	NA	NA	NA
WP_004523722.1\|2060272_2060536_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_044583959.1\|2060545_2062195_-	DUF2875 family protein	NA	NA	NA	NA
WP_044583960.1\|2062213_2064454_-	DUF3274 domain-containing protein	A0A077K801	Ralstonia_phage	3.4e-22	28.4
WP_004528499.1\|2067572_2067878_-	H-NS histone family protein	NA	NA	NA	NA
WP_004552621.1\|2068465_2069497_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_023358505.1\|2069493_2070345_-	ABC transporter permease	NA	NA	NA	NA
WP_009939055.1\|2070331_2071177_-	ABC transporter permease	NA	NA	NA	NA
WP_004533753.1\|2071735_2072188_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_009939053.1\|2072207_2073227_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_080002191.1\|2073223_2073478_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA
WP_023358215.1\|2074840_2076010_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.9e-32	30.1
WP_004552613.1\|2076563_2077220_-	hypothetical protein	NA	NA	NA	NA
WP_038760598.1\|2077801_2079997_-\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA

DBSCAN-SWA_3

2479716 : 2509365

Acanthocystis_turfacea_Chlorella_virus(20.0%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038761590.1\|2479716_2481120_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004190689.1\|2481135_2482452_+	DotU family type VI secretion system protein	NA	NA	NA	NA
WP_004524806.1\|2482454_2486084_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_162483148.1\|2486065_2487040_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_004190273.1\|2487024_2487252_-	hypothetical protein	NA	NA	NA	NA
WP_038761588.1\|2487250_2489881_+	serine/threonine protein kinase	M1I231	Acanthocystis_turfacea_Chlorella_virus	5.0e-09	26.6
WP_038761587.1\|2489933_2491013_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_004524810.1\|2491075_2491654_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004190849.1\|2491646_2493155_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004190698.1\|2493214_2493706_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_009935240.1\|2493724_2494273_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_038761586.1\|2494277_2496149_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_038761600.1\|2496145_2497588_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_038761585.1\|2497566_2500233_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.0e-78	30.7
WP_038758213.1\|2500229_2502434_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	9.6e-46	29.9
WP_004539259.1\|2502449_2503160_+	hypothetical protein	NA	NA	NA	NA
WP_044584002.1\|2503089_2505102_+\|transposase	transposase	S5WIU1	Leptospira_phage	8.0e-31	50.4
WP_071811398.1\|2506109_2506397_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_076847189.1\|2506407_2507559_-	hypothetical protein	NA	NA	NA	NA
WP_102619315.1\|2508185_2509365_+\|transposase	IS3-like element ISBps1 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.2e-60	42.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009165

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009164

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection