CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP009778	Klebsiella pneumoniae subsp. pneumoniae strain KPNIH32 plasmid pKPN-c8b, complete sequence	0 crisprs	NA	0	0
NZ_CP009775	Klebsiella pneumoniae subsp. pneumoniae strain KPNIH32 chromosome, complete genome	3 crisprs	cas3,DEDDh,WYL,RT,DinG,csa3	1	13
NZ_CP009776	Klebsiella pneumoniae subsp. pneumoniae strain KPNIH32 plasmid pKPC-def, complete sequence	0 crisprs	NA	0	1
NZ_CP009777	Klebsiella pneumoniae subsp. pneumoniae strain KPNIH32 plasmid pKPN-a68, complete sequence	0 crisprs	csa3,RT,cas3	0	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009775_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009775_1

815341-815426

Orphan

Consensus_repeat	Method
AATAAAAACCATAAAAACCACAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009775_1

>merge|NZ_CP009775|1|815341-815426|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGTCATAAATCAGAGATATATCACTCCCGGGCAGTTCAGCGAATAAAAACCATAAAAACCATAGT

>NZ_CP009775|1|1|815341-815426|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGT	CATAAATCAGAGATATATCACTCCCGGGCAGTTCAGCG
AATAAAAACCATAAAAACCATAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009775.1\|WP_004151368.1\|818353_821260_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP009775.1\|WP_002888324.1\|806279_807101_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP009775.1\|WP_002888373.1\|829347_830115_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP009775.1\|WP_002888370.1\|828373_829219_+\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP009775.1\|WP_002888349.1\|821447_823805_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP009775.1\|WP_002888368.1\|826326_828036_-\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP009775.1\|WP_002888321.1\|805046_805895_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH	unknown	unknown	gnl\|CDD\|273208
NZ_CP009775.1\|WP_038434689.1\|817067_817607_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP009775.1\|WP_002888327.1\|807097_808087_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP009775.1\|WP_002888320.1\|804311_804791_+\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP009775.1\|WP_002888345.1\|815523_816888_+\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP009775.1\|WP_002888337.1\|812885_813584_-\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP009775.1\|WP_002888332.1\|812025_812853_+\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP009775.1\|WP_002888357.1\|824813_826316_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP009775.1\|WP_002888340.1\|813573_815199_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP009775.1\|WP_002888348.1\|817681_818341_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP009775.1\|WP_002888329.1\|808092_809379_-\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP009775.1\|WP_002888353.1\|823980_824676_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP009775.1\|WP_002888323.1\|805899_806277_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP009775.1\|WP_004147026.1\|809433_811782_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158

Protein	Function_ID	Function_description	E-value
NZ_CP009775.1\|WP_004151368.1\|818353_821260_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP009775.1\|WP_002888324.1\|806279_807101_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP009775.1\|WP_002888373.1\|829347_830115_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48
NZ_CP009775.1\|WP_002888370.1\|828373_829219_+\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP009775.1\|WP_002888349.1\|821447_823805_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP009775.1\|WP_002888368.1\|826326_828036_-\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP009775.1\|WP_002888321.1\|805046_805895_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP009775.1\|WP_038434689.1\|817067_817607_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	6.59953e-84
NZ_CP009775.1\|WP_002888327.1\|807097_808087_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP009775.1\|WP_002888320.1\|804311_804791_+\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP009775.1\|WP_002888345.1\|815523_816888_+\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP009775.1\|WP_002888337.1\|812885_813584_-\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP009775.1\|WP_002888332.1\|812025_812853_+\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP009775.1\|WP_002888357.1\|824813_826316_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP009775.1\|WP_002888340.1\|813573_815199_-\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
NZ_CP009775.1\|WP_002888348.1\|817681_818341_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP009775.1\|WP_002888329.1\|808092_809379_-\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP009775.1\|WP_002888353.1\|823980_824676_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP009775.1\|WP_002888323.1\|805899_806277_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP009775.1\|WP_004147026.1\|809433_811782_-\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0

>NZ_CP009775.1|WP_002888340.1|813573_815199_-|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NZ_CP009775.1|WP_002888337.1|812885_813584_-|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP009775.1|WP_002888332.1|812025_812853_+|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP009775.1|WP_004147026.1|809433_811782_-|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP009775.1|WP_002888329.1|808092_809379_-|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP009775.1|WP_002888327.1|807097_808087_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP009775.1|WP_002888324.1|806279_807101_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP009775.1|WP_002888323.1|805899_806277_-|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP009775.1|WP_002888321.1|805046_805895_-|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP009775.1|WP_002888320.1|804311_804791_+|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP009775.1|WP_002888345.1|815523_816888_+|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP009775.1|WP_038434689.1|817067_817607_+|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPEAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP009775.1|WP_002888348.1|817681_818341_-|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP009775.1|WP_004151368.1|818353_821260_-|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAGIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP009775.1|WP_002888349.1|821447_823805_-|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSHVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP009775.1|WP_002888353.1|823980_824676_-|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP009775.1|WP_002888357.1|824813_826316_-|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATVEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP009775.1|WP_002888368.1|826326_828036_-|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSKAALTH
>NZ_CP009775.1|WP_002888370.1|828373_829219_+|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVREACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP009775.1|WP_002888373.1|829347_830115_+|DedA-family-protein
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR

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Crispr_ID: NZ_CP009775_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009775_2

1299312-1299407

Orphan

Consensus_repeat	Method
TTGTGCCAACAGAATGCCAACAAAGTGCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009775_2

>merge|NZ_CP009775|2|1299312-1299407|CRISPRCasFinder
TTGTGCCAACAGAATGCCAACAAAGTGCCAACGCAAACCCAGTAACCACGCTGCGTACCGGCGAGGTTGTGCCAACAGAATGCCAACAAAGTGCCA

>NZ_CP009775|2|2|1299312-1299407|CRISPRCasFinder
TTGTGCCAACAGAATGCCAACAAAGTGCCA	ACGCAAACCCAGTAACCACGCTGCGTACCGGCGAGG
TTGTGCCAACAGAATGCCAACAAAGTGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009775.1\|WP_004151304.1\|1296147_1296432_-\|host-nuclease-inhibitor-GamL	unknown	unknown	unknown
NZ_CP009775.1\|WP_004151299.1\|1298197_1298431_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP009775.1\|WP_004151286.1\|1304920_1305556_+\|recombination-protein-NinG	unknown	unknown	gnl\|CDD\|368603
NZ_CP009775.1\|WP_004151285.1\|1305552_1305690_+\|YlcG-family-protein	unknown	unknown	unknown
NZ_CP009775.1\|WP_004230547.1\|1299821_1301237_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274672
NZ_CP009775.1\|WP_004151300.1\|1297380_1298070_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP009775.1\|WP_004151298.1\|1298778_1298925_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009775.1\|WP_004151301.1\|1296814_1297030_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009775.1\|WP_004151293.1\|1302139_1302982_+\|ead/Ea22-like-family-protein	unknown	unknown	gnl\|CDD\|379401
NZ_CP009775.1\|WP_004151303.1\|1296520_1296715_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009775.1\|WP_004151302.1\|1296707_1296818_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009775.1\|WP_004151287.1\|1304757_1304928_+\|NinE-family-protein	unknown	unknown	gnl\|CDD\|182029
NZ_CP009775.1\|WP_004151295.1\|1301236_1301530_+\|protein-ren	unknown	unknown	gnl\|CDD\|238042
NZ_CP009775.1\|WP_004151294.1\|1301526_1302033_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009775.1\|WP_004151291.1\|1303154_1303802_+\|DUF551-domain-containing-protein	unknown	unknown	gnl\|CDD\|367946
NZ_CP009775.1\|WP_004151292.1\|1302981_1303158_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009775.1\|WP_004151288.1\|1304302_1304758_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182057
NZ_CP009775.1\|WP_004151306.1\|1294609_1295290_-\|YqaJ-viral-recombinase-family-protein	unknown	unknown	gnl\|CDD\|378216
NZ_CP009775.1\|WP_001548453.1\|1298471_1298693_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|336083
NZ_CP009775.1\|WP_004151305.1\|1295286_1296132_-\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871

Protein	Function_ID	Function_description	E-value
NZ_CP009775.1\|WP_004151299.1\|1298197_1298431_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	9.32854e-22
NZ_CP009775.1\|WP_004151286.1\|1304920_1305556_+\|recombination-protein-NinG	gnl\|CDD\|368603	pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway.	9.44908e-60
NZ_CP009775.1\|WP_004230547.1\|1299821_1301237_+\|AAA-family-ATPase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	9.32956e-159
NZ_CP009775.1\|WP_004151300.1\|1297380_1298070_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	1.58097e-27
NZ_CP009775.1\|WP_001548453.1\|1298471_1298693_+\|hypothetical-protein	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	1.55058e-09
NZ_CP009775.1\|WP_004151293.1\|1302139_1302982_+\|ead/Ea22-like-family-protein	gnl\|CDD\|379401	pfam13935, Ead_Ea22, Ead/Ea22-like protein. This family contains phage proteins and bacterial proteins that are likely to represent integrated phage proteins. This family includes the Lambda phage Ea22 early protein as well as the Bacteriophage P22 Ead protein.	0.000117969
NZ_CP009775.1\|WP_004151288.1\|1304302_1304758_+\|hypothetical-protein	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	1.50704e-78
NZ_CP009775.1\|WP_004151287.1\|1304757_1304928_+\|NinE-family-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	1.47696e-19
NZ_CP009775.1\|WP_004151295.1\|1301236_1301530_+\|protein-ren	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	0.000668668
NZ_CP009775.1\|WP_004151291.1\|1303154_1303802_+\|DUF551-domain-containing-protein	gnl\|CDD\|367946	pfam04448, DUF551, Protein of unknown function (DUF551). This family represents the carboxy terminus of a protein of unknown function, found in dsDNA viruses with no RNA stage, including bacteriophages lambda and P22, and also in some Escherichia coli prophages.	8.71432e-11
NZ_CP009775.1\|WP_004151306.1\|1294609_1295290_-\|YqaJ-viral-recombinase-family-protein	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	1.68114e-32
NZ_CP009775.1\|WP_004151305.1\|1295286_1296132_-\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	3.75286e-34

>NZ_CP009775.1|WP_004151298.1|1298778_1298925_+|hypothetical-protein
MPKSNRFYQAQTHKNVTRDRFIRSVNPVVGMKMRAILEELKRKEEGRE
>NZ_CP009775.1|WP_001548453.1|1298471_1298693_+|hypothetical-protein
MESSTTRNKVEARRIESWLHSQIAELGTTNIAKVAGVNKSTVSRWRESLLPNMSLLLAILISNRPGEKGDFEA
>NZ_CP009775.1|WP_004151299.1|1298197_1298431_+|helix-turn-helix-domain-containing-protein
MKNPAVEKAISIAGSQKELAKRCGKAQSTICDWLNGKKRISPVHVPDLVAAVNGEIKAYEFRPDLPSIFPPPNNSAA
>NZ_CP009775.1|WP_004151300.1|1297380_1298070_-|helix-turn-helix-transcriptional-regulator
MDFSERLARAMSLAGYTQGRLAKEVGMAQSSVNKLLNGANGSRKTVEIASVLGVRPEWLSTGAGEMLADSIQITQMQTPVTPQNGIYRVDVLDVKASAGPGALITNDFIETIRAIEYTSEQARSLFGNRPAHHIKVITVTGDSMDTTISPGDEIFVDISSTHFDSDGVYVFVFGKTLHVKRLQMQRDRLAVISDNPIYEKWYVEPGDEDQFYVMARVLLRQSIEYKRFA
>NZ_CP009775.1|WP_004151301.1|1296814_1297030_-|hypothetical-protein
MSKENNGGPAYPTQGYEGLTVRDYFAAKAMQGWLAGYPAGINHPARSEEGFTVAELSYLMADAMLKAREEV
>NZ_CP009775.1|WP_004151302.1|1296707_1296818_-|hypothetical-protein
MSKQGIRSLIYCLLICGVIWSAVVIKILHATGVFNG
>NZ_CP009775.1|WP_004151303.1|1296520_1296715_-|hypothetical-protein
MANSIPNNGRAVMMRNRRTGAAWLVSFDYRDGSYWHEPQGNLRHIRRPYASRSIEPNLVPAGTH
>NZ_CP009775.1|WP_004151304.1|1296147_1296432_-|host-nuclease-inhibitor-GamL
MNAYRAYDVIEERKWAEQTLTEEKQKWIEDRAKEVFDSLPEDPYAALRQSVSSKSFPYEGLRSDKAGEVYNDLRTAIAYAQAEYDWDHRTGCPF
>NZ_CP009775.1|WP_004151305.1|1295286_1296132_-|phage-recombination-protein-Bet
MANELVITASSLAERGIDGATWSALKNSIYPGAKDESVMMALDYCRARNLDPLLKPVHLVPMSVKDSKSGKSEWRDVVMPGIGLYRIQADRSGDYAGAKEPEFGPDVTLTLTGIEVTVPQWCKYTVSKRMPSGEIVEFSAKEYWVENYATAGRDTTAPNAMWKKRPYGQLAKCAEAQALRKAWPEIGQQPTAEEMEGKTLEVDARDVTPRSTPEAPPLVASEETLQAITDLLTSLNKDWEQDFLPLCSNIFKRDIFQASQLTEEEAQKGFSFLQKKAQVAA
>NZ_CP009775.1|WP_004151306.1|1294609_1295290_-|YqaJ-viral-recombinase-family-protein
MTPEIILERTGIDVTRVEQGDESWHRLRLGVITASEVHNVISKPKSGKKWTDMKMSYFLTLLAEVCTGVAPEVNAKALAWGKQYEADARTLFEFTTDVKVTESPILFRDEGMRTACSPDGLCSDGRGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQFSMWVTGKDAWYFANYDPRMKREGIHHVVVERDDKYMSDFNEMVPEFISKMDESLAEIGFTFGEQWK
>NZ_CP009775.1|WP_004230547.1|1299821_1301237_+|AAA-family-ATPase
MTPPHSIEAEQSVLGGLLLDDDNSERTQKVLSILKPESFYARPHQVIFAEMRQMYRDHKPVDLLTLFDALESKGLTETVGGFAYLAEMSKNTPSAANIVAYAMRVRETAMERYGIEKTTKAIELLYARNGMTAEQKFDAIQGLFTEITEHVKTGRRTGLRTFYDAVTDWSAEFDERLKPDGRSRGLSTGIRSLDELLGVKRIVRGSLFVIGARPKMGKTTLYTQMGINCATVENEPALMFSLEMPEGQMVEKITAQKGRISPNLFYPDMTKDDYGYRGDWNSDLQKATGVMGALIETNNLLIDDTPGISLAHVMAESRRIKRERGKVGMILVDYLTLMTADKAERNDLAYGLITKGLKILAKELDCVVVLLTQLNRDLEKRTNKRPLPSDSRDTGQIEQDCDYWLAIYREGAYDENANQSDTELLLRLNRHGETGVVYCEQRHGAIYDCDQEAASQRRREKEQKPTKRGGF
>NZ_CP009775.1|WP_004151295.1|1301236_1301530_+|protein-ren
MTGKDAILNYLKTHKTCSSPDVAAASGMTHTCINQAANILAKQGVLVAEARVWRTVYYRLATEEEIAGRKSTNQIFNECRQSPAMKRVLAVYGRTSA
>NZ_CP009775.1|WP_004151294.1|1301526_1302033_+|hypothetical-protein
MTITLQAVNKLIASMESAGELSIREQKFLKLAKEFRICSASLDAAIKTGNMLADQNAQLAAENVALKDINAWCKTDAFKNMYREFKTAEALGCSDADCMHDAMLVAIMHAPATPATDRIVAGIKADGVEEFAAKLRIPGDDQFFDALAKGIALAADDFAKQLREGADK
>NZ_CP009775.1|WP_004151293.1|1302139_1302982_+|ead/Ea22-like-family-protein
MTDITELAQSLKAAAEKASNGDWVKESGDGWEACCSANDQANGGFIIAHFVGPDAAENCEFVQAANPANVLALVEALEYYKSREERVTSLVRDNSKSWDELYRQVEAKGKRNVELVEALESEKRICATWRKTAESTSEKLEKAQAAERRWHRVASRVHEQACESDVKIDELEAIRAAAEKLVRCKGRYHSEQNYRALAALFGVNTPDLPPLEHENVHYADAAEMEIEALRQRIAELESRTVKLPPRVDSSNVPFAGNAWNCCLDEVEKRLTAAGIKMEAE
>NZ_CP009775.1|WP_004151292.1|1302981_1303158_+|hypothetical-protein
MAERWKIYLTIAFIGLGATPISMVAAKIDVPVWALIAGHCGATIAGFICAELGRGANQ
>NZ_CP009775.1|WP_004151291.1|1303154_1303802_+|DUF551-domain-containing-protein
MTNNQLAENSVIQLLNSVKLARDNAELADNRVDHSFYYALTIALEELQERRKAAMDSEPVLWAWHHLDMWHVTSHDGRARDLWLSGFKVIPLYRHAQPVLVIPDEMTAEQAYEIGYYYGDPVDVFARGANWMRQHIIDSTLAAAPQSPGSDPATVPGKWISVSERMPENDGAYLCWDNRYVTTYAFIFGAWQANQFIAKNITHWMPLPAGPQEVR
>NZ_CP009775.1|WP_004151288.1|1304302_1304758_+|hypothetical-protein
MNIPQCGIKLHNGNFSAIGKILQEQLSDGKCLRLQVKEWREKRSLSQNALSHMWYAEISEYLINSGRTDATPEWVKRNLKKTYLGCEEVTYTDFITGEKTTTWEPRHTSDLDTGEMHIFLTKVEAWCAQFGLALTIPHGCEYQQLQQKQEA
>NZ_CP009775.1|WP_004151287.1|1304757_1304928_+|NinE-family-protein
MSSLLAKVIERGIFRVPARRKRKVEDKPSDIPTLKDYTARLVDKKWLRLRARRPHA
>NZ_CP009775.1|WP_004151286.1|1304920_1305556_+|recombination-protein-NinG
MRKPARRKCAHCREWFHPAREGQVVCSFECASAIGKKQTAKAREAAKARAVKRQRESEKEGRQRRKARLAELRPNGYYKAQAQKAFNAYIRARDAALPCISCGETNPPDLHGGQWDCGHFKTVGAYPELRFEERNAHKQCKSCNAGAGKYTAKELTVAQQYEAGLVARYGQEYVDWLNGPHEMTNYRREDFIRIRDEYRAKLKALKQREAA
>NZ_CP009775.1|WP_004151285.1|1305552_1305690_+|YlcG-family-protein
MNHDIIERIRDRWKKLRLLRSRGTVLVDYLILRNFIASLSRGSYE

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Crispr_ID: NZ_CP009775_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009775_3

1686393-1686470

Orphan

Consensus_repeat	Method
AAGGCGTCAGCCGCCGCCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009775_3

>merge|NZ_CP009775|3|1686393-1686470|CRISPRCasFinder
AAGGCGTCAGCCGCCGCCCGGCAAAATAACCGCGCAATAGCACCGTAGGCCGGGCAAGGCGTCAGCCGCCGCCCGGCA

>NZ_CP009775|3|3|1686393-1686470|CRISPRCasFinder
AAGGCGTCAGCCGCCGCCCGGCA	AAATAACCGCGCAATAGCACCGTAGGCCGGGC
AAGGCGTCAGCCGCCGCCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009775.1\|WP_004151698.1\|1679265_1680222_+\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|234974
NZ_CP009775.1\|WP_002895284.1\|1674892_1675816_-\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|225813
NZ_CP009775.1\|WP_004153329.1\|1677949_1679269_+\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
NZ_CP009775.1\|WP_004229842.1\|1674018_1674165_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009775.1\|WP_002895578.1\|1687169_1688459_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
NZ_CP009775.1\|WP_004142100.1\|1690850_1691606_+\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
NZ_CP009775.1\|WP_002895580.1\|1688672_1689713_+\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|185063
NZ_CP009775.1\|WP_002895575.1\|1686622_1687099_-\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
NZ_CP009775.1\|WP_002895648.1\|1691598_1692321_+\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NZ_CP009775.1\|WP_004151700.1\|1689709_1690867_+\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NZ_CP009775.1\|WP_004147672.1\|1684461_1685844_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182566
NZ_CP009775.1\|WP_002895358.1\|1680283_1681009_+\|histidine-utilization-repressor	unknown	unknown	gnl\|CDD\|184961
NZ_CP009775.1\|WP_002895655.1\|1693695_1695717_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP009775.1\|WP_002895283.1\|1674369_1674876_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009775.1\|WP_002895658.1\|1695965_1697063_-\|two-component-system-sensor-histidine-kinase-PmrB	unknown	unknown	gnl\|CDD\|236751
NZ_CP009775.1\|WP_002895652.1\|1693071_1693284_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009775.1\|WP_002895420.1\|1682836_1684363_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
NZ_CP009775.1\|WP_014342949.1\|1681901_1682840_+\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
NZ_CP009775.1\|WP_004151696.1\|1676511_1677795_-\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
NZ_CP009775.1\|WP_004152853.1\|1692262_1692985_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223487

Protein	Function_ID	Function_description	E-value
NZ_CP009775.1\|WP_004151698.1\|1679265_1680222_+\|formimidoylglutamase	gnl\|CDD\|234974	PRK01722, PRK01722, formimidoylglutamase; Provisional.	8.10638e-178
NZ_CP009775.1\|WP_002895284.1\|1674892_1675816_-\|acyltransferase-family-protein	gnl\|CDD\|225813	COG3274, COG3274, Predicted O-acyltransferase [General function prediction only].	6.63632e-09
NZ_CP009775.1\|WP_004153329.1\|1677949_1679269_+\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
NZ_CP009775.1\|WP_004152853.1\|1692262_1692985_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	3.17026e-74
NZ_CP009775.1\|WP_002895578.1\|1687169_1688459_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
NZ_CP009775.1\|WP_004142100.1\|1690850_1691606_+\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	1.7976e-160
NZ_CP009775.1\|WP_002895575.1\|1686622_1687099_-\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	7.58373e-117
NZ_CP009775.1\|WP_002895648.1\|1691598_1692321_+\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	4.52132e-105
NZ_CP009775.1\|WP_004151700.1\|1689709_1690867_+\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NZ_CP009775.1\|WP_004147672.1\|1684461_1685844_+\|amino-acid-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NZ_CP009775.1\|WP_002895358.1\|1680283_1681009_+\|histidine-utilization-repressor	gnl\|CDD\|184961	PRK14999, PRK14999, histidine utilization repressor; Provisional.	3.37417e-172
NZ_CP009775.1\|WP_002895655.1\|1693695_1695717_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP009775.1\|WP_002895580.1\|1688672_1689713_+\|biotin-synthase-BioB	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
NZ_CP009775.1\|WP_002895658.1\|1695965_1697063_-\|two-component-system-sensor-histidine-kinase-PmrB	gnl\|CDD\|236751	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB.	0
NZ_CP009775.1\|WP_002895420.1\|1682836_1684363_+\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
NZ_CP009775.1\|WP_014342949.1\|1681901_1682840_+\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NZ_CP009775.1\|WP_004151696.1\|1676511_1677795_-\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0

>NZ_CP009775.1|WP_004147672.1|1684461_1685844_+|amino-acid-permease
MQQQHKPHLLRGLNARHIRFIALGSAIGTGLFYGSASAIKAAGPAVLLAYLIGGAAVFIVMRALGEMAVRNPVSGSFGSYARQYLGPLAGFITGWTYTFEMVIVALADVTAFGIYMGLWYPDVPRWIWILSIIFFIGAMNLCNVRVFGEMEFWLSLVKVVAIIAMMLAGAGIIFFGFGHSFPATGLENLWSHGGFAPNGWQGVIASLGIVMFAFGGVEIIGVTAAEAKDPKKVIPQAINTIPLRIILFYVCTLAVLMAIFPWNSFGEQGSPFVLIFDGLGIPAAATILNIIVISASISAINSDIFGAGRMMYGMSKEGLAPKSFQRIASNGVPWMTVVVMGGALLAAVVLNYLIPEQVFVLIASLAAFATVWVWLMILLSHFAMRRGLSAEERSQIAFPIPFWPVAPLLTLLFMGLVIAVLGMFAETRMALIAGLVWLGLLTVVWYARVRKTALQVATEQ
>NZ_CP009775.1|WP_002895420.1|1682836_1684363_+|histidine-ammonia-lyase
MKSLTLIPGQLSLSQLRDVYSHPVNITLDSGAFAAIDESVACVNAILAEGRTAYGINTGFGLLAQTRISTEDLENLQRSLVLSHAAGVGEPLDDDLTRLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLLGEGKARVRGGEWLPATEALRQVGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAALGSRRPFDARIHEVRGQRGQIDAAALYRHLLTDDSAISQSHHNCSKVQDPYSLRCQPQVMGACLTQIRQAAEVLLAEANAVSDNPLVFAAENDVISGGNFHAEPVAMAADNIALAIAEIGSLSERRIALMMDSHMSQLPPFLVKNGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGRRLWAMAENTRGVLAVEWLAAAQGLDMREGLTTSPLLEEARHLLRERVPHYTQDRYFAPDIDNAIALLAARHLTRLLPAVLH
>NZ_CP009775.1|WP_014342949.1|1681901_1682840_+|urocanate-hydratase
MKRGVRPDMVTDQTSAHDPLHGYLPKGWSWEEYQQKAESDPQGTILAAKRSMADHVQAMLAFHEMGVPTFDYGNNIRQMAQEVGVSNAFDFPGFVPAYIRPLFCRGIGPFRWVALSGDPQDIYKTDAKVKEIIKDDQHLHHWLDMARERISFQGLPARICWVGLEWRQKLGLAFNEMVRSGEVSAPIVIGRDHLDSGSVASPNRETEAMRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGMVIVCDGTDEAAARIARVLHNDPATGVMRHADAGYEIAIECAAEQGLNLPMVAATQGNAK
>NZ_CP009775.1|WP_002895358.1|1680283_1681009_+|histidine-utilization-repressor
MFAQQPRSAPAPFYEKVKQAISEKIHSGVWRPHDRIPSEAELVAQFGFSRMTINRALRELTDEGLLVRLQGVGTFVAEPKGQSALFEVRSIAAEIVARHHQHRCEVLLLEETRADHIQATALSVPEGTRIFHSLMVHYENEVPVQIEDRCVNAAVVPDYLHQDYTATTPHDYLSLIAPLTEGEHIVEAVQATAEECALLHIHAHDPCLLIRRRTWSTTHIVSHARLLFPGSRYRLQGRFGS
>NZ_CP009775.1|WP_004151698.1|1679265_1680222_+|formimidoylglutamase
MMLWQATPASLWQGRDDSAEAPNALRLFQTIVRAERFAPQEMPGDIALLGFACDEGVRRNKGRTGAADGPATLRRALANMASHQGHDRCVDMGTISVDGEQLEAAHQALREAVADCQRVGKRTLVLGGGHETAFGHGAGVLDAFPGEKVGIINLDAHLDLRFADCASSGTPFRQLALECDAQQRGFHYTCIGVSRAANTQALWDEAARRQVAIVEDLEVLTAFETRVLPELERNIAQFDRLYLTIDLDVLPAREMPAVSAPAALGVPLATLLRIVEPLCRNGKLQAVDLVEFNPLFDIDGQGARAAARLAWQIAHWWR
>NZ_CP009775.1|WP_004153329.1|1677949_1679269_+|imidazolonepropionase
MVFSHKKITFPCAIVDFTGVMKINVYTTHDKLSAMTEATSELVIWRNGRLATLNPDHAQPYGLLERHALLVRDGRIAAIVAEDDVPSGRSIDLEGRLVTPGLIDCHTHLVFGGSRAQEWEQRLNGVSYQTISASGGGINSTVRATRDSSEAELLALAQPRLERLLREGVTTLEIKSGYGLDLPNERKMLRVARQLADHNGVELSATLLSAHATPPEYQGDADGYITLVCETILPTLWQEGLFESVDVFCENVGFSPQQTERVFQAAQALGIPVKGHVEQLSSLGGAQLVSRYHGLSADHIEYLTEEGVAAMRESGTVAALLPGAFYFLNETRKPPVELLRKYQVPMAVATDFNPGTSPFASLHLAMNMACVKFGLTPEEAWAGVTRHAARALGRQASHGQLAPGFVANFAIWDAEHPVEMVYEPGRSPLWHRVVQGELQ
>NZ_CP009775.1|WP_004151696.1|1676511_1677795_-|putative-acyl-CoA-thioester-hydrolase
MNTYSVSRLALALAFGVTLSACSSTPADQQPSTQTAPGTTARPILNAEEAKNFTPAAYFQSLAPNAAAWTPSAISLPAQPDFIVGPAGTQGVTHTTIQAAVDAAIARHSNRRLYIAIMPGEYPGTVYVPAAPGALTLYGTGDKPIDVKISEAIDSEMDRNTWRRLVNPGGKYMPGKPAWYMFDSCQSKSAATIGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQVQINKVNILGRQNTFFVTNSGVQNRLQDNRQTRTLVTNSYIEGDVDIVSGRGAVVFDNTDFRVVNSRTQKEAYVFAPATLKSVTYGFLATNSRFTASGDNVAQLGRALDVDGNSNGQVVIRDSAINEGFNIAQPWAAAVGSGRPFSGNTGSADDKGNLQRNLNDNGFNRMWEYNNRGVGSTVVAEPKQ
>NZ_CP009775.1|WP_002895284.1|1674892_1675816_-|acyltransferase-family-protein
MTAVTFFTIYNTWDRFDYDYHWILGLLTFISTIATPLFFVVAGYLDAQTRHDANWQIGKIKSVVIVFLFWVTVYYVWEPYQRGYLIQPWFIFALIVIYTFHPLIAWLSQRRGLFFAVLLTLLCCSYGYDLLSVIYPDRHLFSLPPQYRLWTWLLFYLTGQLFNDPKVAEWIRNPQVIKGSIIALPFVYLFTWFYERHFFFALFKADRNAFILTGSQIYILIVLLVIAANAVQFKKNREWKEAVLATVSKAMTGVYILHYSVFHLLVMLIPVHSLATKLGVIALTFVLSVLISLAALSSTLLRKVITL
>NZ_CP009775.1|WP_002895283.1|1674369_1674876_+|hypothetical-protein
MRGKSVMLLAGLASLAQANELNLYSVNTGSYVYHLTNNHGQYTENFENHFFSVERKFSADSKYSLLLGTMNNSFNDRCLALGVRRDWYHSGSGWTFKGVYGYTGEFFFDAFEHCGDHGSYKDFKDATGIGFSPYIYHAIQYNFTDYFAVESGIIIPSVFVISIQWSFR
>NZ_CP009775.1|WP_004229842.1|1674018_1674165_+|hypothetical-protein
MAGEMHEIAPTREGVNSNAVVDRWLSSASDSEHSGKYDEALSAFCTVR
>NZ_CP009775.1|WP_002895575.1|1686622_1687099_-|kinase-inhibitor
MKLISHDLQDGGKLPNRHVFNGMGYDGDNISPHLMWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVANLPADTRVLPQGAGSGQAELPEEAVQTRTDFGKAGYGGAAPPKGETHRYIFTVHALDVEKIEVDAEASGAMVGFNVHFHSLASASITALFS
>NZ_CP009775.1|WP_002895578.1|1687169_1688459_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTLDDLAFDRRHIWHPYTSMTSPLPVYPVVSAHGCELSLAGGEQLVDGMSSWWAAIHGYNHPRLNAALKGQIDQMSHVMFGGITHPPAVALCRQLVAMTPASLECVFLADSGSVAVEVAMKMALQYWQAKGEPRRRFLTFRNGYHGDTFGAMSVCDPQNSMHSLWQGYLPDNLFAPAPQSRFDGEWDEMDMVPFARLMAAHRHEIAAVILEPIVQGAGGMRMYHPEWLKRVRKMCDREGILLIADEIATGFGRTGKLFACEHAGITADILCLGKALTGGTMTLSAAITTRTVAETISNGEAGCFMHGPTFMGNPLACAVAGESLRLLESGEWQPQVTAIEAQLQAELAPARGSALVADVRVLGAIGVVETRRPVNMAALQRFFVEQGVWIRPFGRLIYLMPPYIITPEQLTRLTRAVNQAVQDETFFSE
>NZ_CP009775.1|WP_002895580.1|1688672_1689713_+|biotin-synthase-BioB
MAHQPRWTMSQVTELFNKPLIDLLFEAQQIHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSARYKTGLEAERLMEVEQVLESARQAKNAGSTRFCMGAAWKNPNDRDMPYLEQMVKGVKALGLESCMTLGTLTDSQAQRLAEAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLDKVRDAGIKVCSGGIVGLGESVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAIARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGINPQQTAVLEGDNEQQQRLEQALLTPDTEEYYNAAAL
>NZ_CP009775.1|WP_004151700.1|1689709_1690867_+|8-amino-7-oxononanoate-synthase
MSWQQRIDRALDERRAAEAFRRRLPVTHGAGRWLEREGERWLNFSSNDYLGLSQHPAIIAAWQQGATRYGVGAGGSGHVSGYSEAHRALEEALVDWLGYPRALLFISGFAANQALIAALVEKDDRIVADRLSHASLLEAASLSPAQLRRFTHNDPQQLAQLLAKPLAGEQLAVTEGIFSMDGDSAPLAAIHAATQAAGAVLLVDDAHGVGVVGDEGRGSCAAQAVRPELLVVTFGKAFGVSGAAVLCDEAMADYLLQFARHLIYSTAMPPAQAVALSAALGIIRSDEGRQRRDILAARIRQFREGMGKVSLGLTDSVSAIQPLIVGDNARALNLACRLRDAGCWATAIRPPTVPVGSARLRLTLTAAHHAEDINRLLEVLHGHSE
>NZ_CP009775.1|WP_004142100.1|1690850_1691606_+|malonyl-ACP-O-methyltransferase-BioC
MATVNKQAVAAAFGRAASGYTQHDELQRRCADLLLRQLARRDFAQVLDAGCGPGSMSRYWREAGSVVTALDLSAGMLAQAQRNDAAQHYLLGDIEALPLPDACVDLAWSNLAVQWCDDLRAAIGELYRVARPGGRVAFSTLLADSLPELNQAWQAIDDRPHANRFLSEAAVRAALSGLRATGEVHQISLPFADALSAMRSLKGIGATHLHQGRTAAPLGRGKLRELQLAWPQRQGICPLTYSLFTGVIERD
>NZ_CP009775.1|WP_002895648.1|1691598_1692321_+|ATP-dependent-dethiobiotin-synthetase-BioD
MTKRFFVTGTDTEVGKTIASSALLQAANLLGFHTAGYKPVASGSELTGDGLRNEDALALQRHSRVALRYDQVNPYTFAEPTSPHIISADEGRPIAAARLSSGLRELEGLADWVLVEGAGGWFTPLSDSLTFADWAQAEQLPVILVVGVKLGCINHAMLTAQAVRQAGLPLAGWIANDVQPPGKRHAEYLATLKNRLAAPFLGEIPWLADIAQRDDLGQYLDLRALDPALSTAPAAAHPAP
>NZ_CP009775.1|WP_004152853.1|1692262_1692985_-|ATP-binding-cassette-domain-containing-protein
MLNLQAVNHFYGNQHSLWNVDLVLRPGECIGVLGREGMGKTTLVNCIAGHLPVASGRMTWHDIGAPPQDLTPLSAQSRSAIGIGYVPQDKRIFSQLSVEENLHIALAAGKPGANASGGEIYEHFPELYALRQRKGASLSDDDQYQLALARALIVQPRLLILDEPSRGRGPRCLQKLADLLLRLNRDIGLTVLLAEQHLPFIRRVADRFCVLHRGRNVAEGDIMALDEPLLAQWITPDPAP
>NZ_CP009775.1|WP_002895652.1|1693071_1693284_-|hypothetical-protein
MDNCPQPKTTAARRLSPFAVNRVAKNFYRTIFDNYPLKAARFLLLFAPPFSVGHRKSAAPALTRPDGIGV
>NZ_CP009775.1|WP_002895655.1|1693695_1695717_+|excinuclease-ABC-subunit-B
MSKSFVLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVEGTVPRYTIYPKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQLGQGLAKTKAKGRGKAKAVEPAGLSAVDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>NZ_CP009775.1|WP_002895658.1|1695965_1697063_-|two-component-system-sensor-histidine-kinase-PmrB
MALFATETWTMRHRLLLTIGAILVVCQLISVFWLWHESKEQIQLLVASAIEGHNNQKHVEHEVREAVASLLVPSLLIVGLALYISMLAVRKITRPLSRLQSELENRTPDNLTPIVLSESVPEVTAVTTALNQLVSRLNLTLDRERLFTADVAHELRTPLAGLRLHLELLAKVHGMGVDPLIQRLDQMTTSISQLLQLARVGQSFSAGSYQQVLLLDDVVKPLQDELEAMLAQRQQRLLLTDIENEAVVSGDATLIGVILRNLVENAHRYSPEGSTIRVSVKAGLMPVMAVEDEGPGIDEAKSGELSKAFVRMDSRYGGIGLGLSIVTRIAQLHDAQFFLHNRQPGPGVRAWVLFPQRGGQNVSTH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP009775_2	2.1\|1299342\|36\|NZ_CP009775\|CRISPRCasFinder	1299342-1299377	36	MK448233	Klebsiella phage ST11-VIM1phi8.1, complete genome	8447-8482	1.0
NZ_CP009775_2	2.1\|1299342\|36\|NZ_CP009775\|CRISPRCasFinder	1299342-1299377	36	MK448235	Klebsiella phage ST512-KPC3phi13.1, complete genome	8447-8482	1.0
NZ_CP009775_2	2.1\|1299342\|36\|NZ_CP009775\|CRISPRCasFinder	1299342-1299377	36	MK448231	Klebsiella phage ST101-KPC2phi6.1, complete genome	11383-11418	1.0

1. spacer 2.1|1299342|36|NZ_CP009775|CRISPRCasFinder matches to MK448233 (Klebsiella phage ST11-VIM1phi8.1, complete genome) position: , mismatch: 0, identity: 1.0

acgcaaacccagtaaccacgctgcgtaccggcgagg	CRISPR spacer
acgcaaacccagtaaccacgctgcgtaccggcgagg	Protospacer
************************************

2. spacer 2.1|1299342|36|NZ_CP009775|CRISPRCasFinder matches to MK448235 (Klebsiella phage ST512-KPC3phi13.1, complete genome) position: , mismatch: 0, identity: 1.0

acgcaaacccagtaaccacgctgcgtaccggcgagg	CRISPR spacer
acgcaaacccagtaaccacgctgcgtaccggcgagg	Protospacer
************************************

3. spacer 2.1|1299342|36|NZ_CP009775|CRISPRCasFinder matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 0, identity: 1.0

acgcaaacccagtaaccacgctgcgtaccggcgagg	CRISPR spacer
acgcaaacccagtaaccacgctgcgtaccggcgagg	Protospacer
************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

593006 : 598831

Enterobacteria_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152202.1\|593006_593573_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8
WP_004152203.1\|593590_593836_-	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	5.5e-19	56.8
WP_004152204.1\|593832_594570_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.1e-70	59.4
WP_000556592.1\|595130_595397_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.0e-30	71.6
WP_004153681.1\|595393_595942_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	1.1e-30	69.4
WP_004152205.1\|595938_596166_+	hypothetical protein	NA	NA	NA	NA
WP_004152206.1\|596162_596483_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_004152207.1\|596497_598831_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	83.9

DBSCAN-SWA_2

1067077 : 1078731

Enterobacteria_phage(70.0%)

integrase

attL 1055211:1055225|attR 1078268:1078282

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1055211:1055225	attL	NA	NA	NA	NA
WP_002889890.1\|1067077_1069411_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	82.2
WP_002889897.1\|1069422_1069743_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_002889911.1\|1069739_1069967_-	hypothetical protein	NA	NA	NA	NA
WP_024940872.1\|1069963_1070521_-	ash family protein	Q7M2A7	Enterobacteria_phage	1.8e-33	70.4
WP_002889915.1\|1070517_1070784_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_002889917.1\|1071325_1072063_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	9.0e-73	60.7
WP_002889919.1\|1072059_1072305_+	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	1.9e-19	58.0
WP_002889930.1\|1072322_1072889_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.5e-59	64.3
WP_004152979.1\|1073457_1073883_-	hypothetical protein	NA	NA	NA	NA
WP_004152029.1\|1073882_1074833_-	AAA family ATPase	A0A1X9IGI7	Lactococcus_phage	1.2e-13	27.1
WP_002889938.1\|1074820_1076011_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	6.4e-145	62.7
WP_002889940.1\|1076363_1077617_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	8.9e-89	44.9
WP_004144574.1\|1077627_1078731_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.8e-62	40.5
1078268:1078282	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1288286 : 1333561

Escherichia_phage(25.0%)

holin,lysis,head,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004143010.1\|1288286_1289672_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4
WP_004143016.1\|1289717_1289930_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004143017.1\|1289931_1290798_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
WP_004151317.1\|1292268_1292604_-	excisionase family DNA-binding protein	NA	NA	NA	NA
WP_004151316.1\|1292605_1292821_-	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	4.0e-13	52.9
WP_004151314.1\|1292822_1293041_-	hypothetical protein	A0A1I9LJM7	Stx_converting_phage	1.2e-09	47.2
WP_004151312.1\|1293037_1293805_-	hypothetical protein	D5LH17	Escherichia_phage	1.7e-66	53.4
WP_004151310.1\|1293801_1294458_-	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-113	87.5
WP_004151308.1\|1294454_1294613_-	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	3.0e-10	60.8
WP_004151306.1\|1294609_1295290_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	7.9e-124	93.4
WP_004151305.1\|1295286_1296132_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	6.9e-69	59.2
WP_004151304.1\|1296147_1296432_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	8.0e-30	62.8
WP_004151303.1\|1296520_1296715_-	hypothetical protein	NA	NA	NA	NA
WP_004151302.1\|1296707_1296818_-	hypothetical protein	NA	NA	NA	NA
WP_004151301.1\|1296814_1297030_-	hypothetical protein	B5WZV1	Pseudomonas_phage	1.6e-09	48.6
WP_004151300.1\|1297380_1298070_-	helix-turn-helix transcriptional regulator	G8C7U1	Escherichia_phage	4.3e-61	52.2
WP_004151299.1\|1298197_1298431_+	helix-turn-helix domain-containing protein	G8C7U2	Escherichia_phage	4.3e-13	50.7
WP_001548453.1\|1298471_1298693_+	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004151298.1\|1298778_1298925_+	hypothetical protein	NA	NA	NA	NA
WP_004230546.1\|1298965_1299817_+	hypothetical protein	F1C5C3	Cronobacter_phage	5.3e-85	56.3
WP_004230547.1\|1299821_1301237_+	AAA family ATPase	Q9MCT4	Escherichia_phage	1.8e-183	67.1
WP_004151295.1\|1301236_1301530_+	protein ren	O48423	Enterobacteria_phage	3.3e-26	65.6
WP_004151294.1\|1301526_1302033_+	hypothetical protein	A0A0A6Z565	Enterobacter_phage	3.0e-27	59.6
WP_004151293.1\|1302139_1302982_+	ead/Ea22-like family protein	A0A2H4FRZ0	Salmonella_phage	1.8e-29	60.8
WP_004151292.1\|1302981_1303158_+	hypothetical protein	NA	NA	NA	NA
WP_004151291.1\|1303154_1303802_+	DUF551 domain-containing protein	A5LH60	Enterobacteria_phage	4.5e-12	32.6
WP_004151288.1\|1304302_1304758_+	hypothetical protein	K7P7B8	Enterobacteria_phage	8.0e-56	69.5
WP_004151287.1\|1304757_1304928_+	NinE family protein	G8C7V4	Escherichia_phage	1.3e-14	73.2
WP_004151286.1\|1304920_1305556_+	recombination protein NinG	M9NYX8	Enterobacteria_phage	2.7e-81	77.9
WP_004151285.1\|1305552_1305690_+	YlcG family protein	NA	NA	NA	NA
WP_004151284.1\|1305682_1306213_+	HNH endonuclease	A0A193GYW9	Enterobacter_phage	5.2e-30	43.1
WP_004151283.1\|1306209_1306899_+	antitermination protein	I6PDF8	Cronobacter_phage	1.4e-56	54.5
WP_004151282.1\|1307808_1308057_+\|holin	class II holin family protein	NA	NA	NA	NA
WP_004151281.1\|1308059_1308590_+	lysozyme	G9L6J6	Escherichia_phage	6.0e-79	78.5
WP_004151280.1\|1308586_1309051_+\|lysis	lysis protein	Q76H63	Enterobacteria_phage	2.4e-55	73.2
WP_004151279.1\|1309156_1309486_-	hypothetical protein	NA	NA	NA	NA
WP_004151277.1\|1309856_1310459_+	hypothetical protein	G8C7P2	Escherichia_phage	5.4e-76	80.9
WP_004151276.1\|1310458_1311931_+	hypothetical protein	A0A1W6JNY3	Morganella_phage	1.3e-248	82.5
WP_004151275.1\|1311943_1313365_+	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	9.6e-148	57.1
WP_004151274.1\|1313339_1314344_+\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	9.0e-116	69.7
WP_004151273.1\|1314385_1314862_+	hypothetical protein	NA	NA	NA	NA
WP_004151272.1\|1314934_1316320_+	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	2.3e-154	60.0
WP_004151271.1\|1316323_1316752_+	hypothetical protein	F1C5E0	Cronobacter_phage	1.6e-42	60.8
WP_004151270.1\|1316763_1317858_+	hypothetical protein	F1C5E1	Cronobacter_phage	1.7e-123	62.8
WP_004151269.1\|1317868_1318108_+	hypothetical protein	NA	NA	NA	NA
WP_004151268.1\|1318110_1318491_+	hypothetical protein	F1C5E2	Cronobacter_phage	5.3e-29	55.3
WP_004151267.1\|1318490_1318664_+	hypothetical protein	I6R0P9	Salmonella_phage	1.4e-13	56.1
WP_004151266.1\|1318663_1319026_+	hypothetical protein	A0A173GCE0	Salmonella_phage	1.8e-18	45.0
WP_004151265.1\|1319028_1319454_+	hypothetical protein	R9TPP7	Aeromonas_phage	5.1e-28	47.9
WP_004151264.1\|1319450_1319843_+	hypothetical protein	G0ZNE4	Cronobacter_phage	5.1e-35	52.7
WP_004151263.1\|1319911_1320664_+	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	5.8e-43	42.1
WP_004151262.1\|1320716_1321394_+	hypothetical protein	F1C5E8	Cronobacter_phage	4.8e-73	57.9
WP_004151261.1\|1321569_1322325_+	KilA-N domain-containing protein	K7PGT4	Enterobacteria_phage	2.4e-60	51.0
WP_004151260.1\|1322327_1322582_+	hypothetical protein	K7PM89	Enterobacteria_phage	6.7e-20	73.0
WP_004151259.1\|1322875_1323346_+	hypothetical protein	NA	NA	NA	NA
WP_004151258.1\|1323362_1323722_-	Arc family DNA-binding protein	A0A0P0ZBD1	Stx2-converting_phage	3.8e-16	47.5
WP_004151257.1\|1323821_1323992_+	Arc family DNA-binding protein	I6R9A8	Salmonella_phage	6.1e-17	87.0
WP_004151256.1\|1323981_1324695_+	hypothetical protein	H6WRU8	Salmonella_phage	3.9e-49	50.2
WP_004151255.1\|1324760_1325546_+	phage repressor protein	A0A2L1IV39	Escherichia_phage	1.9e-84	59.7
WP_004151254.1\|1325673_1326177_+	hypothetical protein	NA	NA	NA	NA
WP_004151253.1\|1326269_1329716_+	tape measure protein	Q5G8W8	Enterobacteria_phage	1.4e-163	48.6
WP_004151252.1\|1329758_1330235_+	hypothetical protein	A0A2P1MXB5	Escherichia_phage	3.0e-37	49.7
WP_004199076.1\|1330234_1330705_+	hypothetical protein	R9TPR6	Aeromonas_phage	2.5e-28	41.0
WP_004151250.1\|1330701_1331097_+	C40 family peptidase	F1C5F2	Cronobacter_phage	8.0e-36	54.0
WP_004151249.1\|1331083_1333561_+	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	2.7e-198	45.6

DBSCAN-SWA_4

1779966 : 1817302

Salmonella_phage(87.18%)

head,portal,terminase,tail,lysis,plate,integrase,capsid

attL 1779874:1779892|attR 1817374:1817392

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1779874:1779892	attL	NA	NA	NA	NA
WP_014342959.1\|1779966_1780947_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.4e-97	57.2
WP_004178082.1\|1781434_1782922_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004150866.1\|1783020_1783965_-	hypothetical protein	NA	NA	NA	NA
WP_004152885.1\|1783976_1784855_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.7e-30	39.9
WP_000188448.1\|1785000_1785222_+	hypothetical protein	NA	NA	NA	NA
WP_000460893.1\|1785254_1785764_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000956179.1\|1785771_1785972_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.6e-32	97.0
WP_000963473.1\|1785935_1786277_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
WP_004150864.1\|1786344_1786578_+	DUF2732 family protein	E5G6L6	Salmonella_phage	4.1e-32	96.1
WP_000752622.1\|1786577_1786805_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	6.0e-36	98.7
WP_004150863.1\|1786801_1787659_+	DNA adenine methylase	E5G6L8	Salmonella_phage	2.0e-156	95.4
WP_004150862.1\|1787655_1790070_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_001154434.1\|1790223_1790412_+	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_001217575.1\|1790422_1790656_+	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_000700647.1\|1790770_1791448_+	hypothetical protein	NA	NA	NA	NA
WP_004199124.1\|1791723_1793466_+	AIPR family protein	NA	NA	NA	NA
WP_002895959.1\|1793527_1794553_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	7.6e-171	86.7
WP_004150858.1\|1794552_1796319_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.0
WP_002895967.1\|1796461_1797295_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
WP_002895972.1\|1797311_1798370_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.1e-180	93.1
WP_000059191.1\|1798373_1799024_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_002896151.1\|1799119_1799584_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.0
WP_002896155.1\|1799583_1799787_+\|tail	tail protein X	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
WP_002896158.1\|1799790_1800006_+	hypothetical protein	E5G6N0	Salmonella_phage	3.6e-30	90.1
WP_002896161.1\|1799986_1800496_+	lysozyme	E5G6N1	Salmonella_phage	2.1e-81	83.4
WP_002896163.1\|1800500_1800884_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.1e-17	42.0
WP_002896168.1\|1800880_1801309_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	9.6e-51	77.9
WP_002896170.1\|1801295_1801442_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	6.0e-13	76.1
WP_002896172.1\|1801404_1801836_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
WP_002896175.1\|1801828_1802275_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-50	71.2
WP_004150857.1\|1802271_1802964_-	hypothetical protein	NA	NA	NA	NA
WP_002896177.1\|1803058_1803631_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	4.7e-77	72.3
WP_002896179.1\|1803627_1803990_+	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	5.8e-49	84.7
WP_002896182.1\|1803976_1804885_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	7.6e-106	66.9
WP_004150856.1\|1804877_1805477_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-58	60.5
WP_019724930.1\|1807695_1808430_+	hypothetical protein	NA	NA	NA	NA
WP_002896186.1\|1808433_1809165_+	hypothetical protein	NA	NA	NA	NA
WP_002896188.1\|1809161_1809365_+	hypothetical protein	NA	NA	NA	NA
WP_002896191.1\|1809394_1810471_+\|tail	phage tail protein	Q37842	Escherichia_phage	1.2e-25	44.8
WP_002896193.1\|1810609_1811782_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-210	93.3
WP_002896201.1\|1811791_1812307_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
WP_002896204.1\|1812359_1812659_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.7e-33	79.0
WP_002896220.1\|1812673_1812793_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_002896222.1\|1812785_1815413_+\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	5.6e-117	42.0
WP_002896224.1\|1815409_1815895_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	7.2e-63	75.6
WP_002896225.1\|1815891_1816992_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.4
WP_000972391.1\|1817083_1817302_+	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	7.5e-20	69.0
1817374:1817392	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1851718 : 1861182

Dickeya_phage(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002896440.1\|1851718_1852834_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_004150848.1\|1852830_1854771_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896516.1\|1854847_1855069_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_002896520.1\|1855394_1855712_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896522.1\|1855742_1858022_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_001040187.1\|1858142_1858361_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_002898014.1\|1858714_1859416_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_004150847.1\|1859460_1861182_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3

DBSCAN-SWA_6

2284619 : 2356373

uncultured_Caudovirales_phage(35.29%)

terminase,holin,transposase,plate,integrase

attL 2282700:2282714|attR 2291640:2291654

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2282700:2282714	attL	NA	NA	NA	NA
WP_004152144.1\|2284619_2285381_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.4e-20	32.5
WP_004152145.1\|2285597_2287130_+	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.1e-21	30.0
WP_016197745.1\|2287328_2287877_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_004152147.1\|2288073_2289255_+\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	5.6e-202	84.2
WP_004152148.1\|2289235_2289478_-	hypothetical protein	A0A0M4RTZ2	Salmonella_phage	2.2e-20	73.8
WP_004198245.1\|2289437_2289584_-	hypothetical protein	A0A1B5FPC2	Escherichia_phage	2.9e-15	70.8
WP_014343018.1\|2289656_2289890_-	hypothetical protein	NA	NA	NA	NA
WP_004152150.1\|2290132_2290345_-	hypothetical protein	A0A286S2B6	Klebsiella_phage	3.4e-33	98.6
WP_004152151.1\|2290341_2290566_-	hypothetical protein	A0A286S2B3	Klebsiella_phage	3.1e-29	89.2
WP_004154298.1\|2290555_2291266_-	Rha family transcriptional regulator	A0A286S260	Klebsiella_phage	2.1e-111	88.3
WP_004152153.1\|2291271_2291790_-	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.7e-94	98.8
2291640:2291654	attR	NA	NA	NA	NA
WP_004152154.1\|2291894_2292722_-	hypothetical protein	Q8W654	Enterobacteria_phage	5.5e-111	84.0
WP_004152155.1\|2292718_2292913_-	hypothetical protein	NA	NA	NA	NA
WP_004152156.1\|2292909_2293335_-	hypothetical protein	A0A286S1S2	Klebsiella_phage	3.5e-53	77.9
WP_004177208.1\|2293331_2293550_-	hypothetical protein	A0A286S1P6	Klebsiella_phage	6.6e-32	98.6
WP_004152157.1\|2293521_2293776_-	hypothetical protein	A0A286SGR4	Klebsiella_phage	3.1e-41	97.6
WP_004152158.1\|2293768_2294134_-	hypothetical protein	A0A286S1Q6	Klebsiella_phage	6.9e-58	99.2
WP_004152159.1\|2294303_2294492_-	hypothetical protein	A0A286S1P8	Klebsiella_phage	4.6e-26	100.0
WP_004152160.1\|2294484_2294799_-	hypothetical protein	A0A286S1T9	Klebsiella_phage	1.0e-49	100.0
WP_004152161.1\|2294969_2295638_-	LexA family transcriptional regulator	A0A286S2B2	Klebsiella_phage	2.4e-125	99.5
WP_004152162.1\|2295735_2295957_+	helix-turn-helix transcriptional regulator	A0A286S2C1	Klebsiella_phage	3.0e-32	100.0
WP_004198228.1\|2296533_2298192_+	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	0.0e+00	96.0
WP_004198233.1\|2298193_2299156_+	toprim domain-containing protein	A0A286N2Q0	Klebsiella_phage	4.8e-183	99.4
WP_004198239.1\|2299152_2299629_+	hypothetical protein	A0A286N2Q1	Klebsiella_phage	1.8e-90	100.0
WP_004152167.1\|2299625_2300408_+	antitermination protein	F1C595	Cronobacter_phage	7.2e-113	76.8
WP_004146526.1\|2300813_2301062_+\|holin	class II holin family protein	NA	NA	NA	NA
WP_004152169.1\|2301064_2301595_+	lysozyme	K7PLY1	Enterobacteria_phage	2.7e-79	77.1
WP_004153952.1\|2301591_2301981_+	lipase chaperone	A0A192Y6H8	Salmonella_phage	9.4e-21	49.2
WP_004152170.1\|2302215_2302536_+	hypothetical protein	NA	NA	NA	NA
WP_004218030.1\|2302901_2303390_+	hypothetical protein	NA	NA	NA	NA
WP_004152172.1\|2303340_2304741_+\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	9.4e-188	69.0
WP_004152173.1\|2304978_2306430_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	3.8e-192	68.8
WP_004152174.1\|2306485_2307034_+	hypothetical protein	A0A0M4REK0	Salmonella_phage	3.0e-49	56.3
WP_004199270.1\|2307085_2308288_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	2.6e-106	54.1
WP_000528476.1\|2308291_2308786_+	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.2e-50	62.7
WP_001132269.1\|2308797_2309739_+	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	1.7e-137	77.1
WP_000725700.1\|2309778_2310060_+	hypothetical protein	NA	NA	NA	NA
WP_000113538.1\|2310028_2310448_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.3e-40	60.7
WP_000834982.1\|2310444_2310951_+	hypothetical protein	NA	NA	NA	NA
WP_001116156.1\|2310950_2311337_+	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	1.1e-48	78.2
WP_004152176.1\|2311431_2311872_+	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
WP_004152177.1\|2311875_2313021_+	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	76.9
WP_004152178.1\|2313031_2313322_+	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	2.6e-23	85.5
WP_085955245.1\|2313262_2314455_-\|transposase	IS3-like element ISKpn18 family transposase	U5P429	Shigella_phage	3.5e-50	43.5
WP_004152564.1\|2314781_2315207_+	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	2.6e-40	63.4
WP_004152565.1\|2315242_2315395_+	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	7.6e-19	88.0
WP_004152566.1\|2315384_2317388_+	lytic transglycosylase domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	1.2e-247	63.6
WP_004152567.1\|2317387_2317987_+	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	9.9e-54	57.6
WP_004217362.1\|2318062_2318290_+	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	4.6e-20	56.0
WP_004152569.1\|2318292_2319315_+	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	9.2e-100	54.2
WP_004152570.1\|2319314_2319656_+	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.8e-23	46.6
WP_004199301.1\|2319705_2319888_+	hypothetical protein	NA	NA	NA	NA
WP_004152571.1\|2319930_2320497_+	hypothetical protein	NA	NA	NA	NA
WP_004152572.1\|2320550_2321204_+	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	1.0e-59	63.5
WP_004152573.1\|2321205_2321559_+	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.3e-50	80.3
WP_004152574.1\|2321558_2322755_+\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	3.9e-158	72.9
WP_004152575.1\|2322751_2323525_+	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	2.8e-77	54.4
WP_004152576.1\|2323524_2324391_+	hypothetical protein	A0A2H4IYR0	uncultured_Caudovirales_phage	1.9e-34	64.5
WP_004152577.1\|2324390_2324588_+	hypothetical protein	NA	NA	NA	NA
WP_004218487.1\|2326938_2327667_+	hypothetical protein	NA	NA	NA	NA
WP_002902128.1\|2327677_2328409_+	hypothetical protein	NA	NA	NA	NA
WP_002902131.1\|2328405_2328615_+	hypothetical protein	NA	NA	NA	NA
WP_002902133.1\|2328719_2329004_+	hypothetical protein	NA	NA	NA	NA
WP_002902136.1\|2329226_2329475_-	DinI-like family protein	S5MQI1	Escherichia_phage	1.4e-25	70.4
WP_002902144.1\|2330320_2330812_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002902148.1\|2330854_2332399_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004218490.1\|2332408_2333752_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004151603.1\|2333748_2334438_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004151602.1\|2334434_2336141_+	OmpA family protein	NA	NA	NA	NA
WP_002902160.1\|2336145_2336637_+	type VI secretion system effector Hcp	NA	NA	NA	NA
WP_002902163.1\|2336901_2339556_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	2.5e-96	33.4
WP_004228410.1\|2339557_2341927_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	9.1e-18	33.8
WP_002902169.1\|2341927_2342707_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_002902172.1\|2342770_2343301_+	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902174.1\|2343369_2343900_+	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902176.1\|2343967_2344498_+	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902178.1\|2344566_2345097_+	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902180.1\|2345164_2345695_+	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_004151601.1\|2345682_2348100_+	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_002902252.1\|2348144_2348402_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_002902254.1\|2348398_2349538_+	hypothetical protein	NA	NA	NA	NA
WP_004151599.1\|2349521_2352947_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_004151598.1\|2354618_2356373_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_7

2554287 : 2565174

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210516.1\|2554287_2554908_-	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0
WP_004151609.1\|2554900_2556166_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.5
WP_004151610.1\|2556177_2557080_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	7.7e-159	99.3
WP_002210513.1\|2557340_2558102_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_004176269.1\|2558122_2558983_-	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002904006.1\|2559280_2559541_+	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_001620097.1\|2559627_2560716_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_004151612.1\|2560746_2562012_-	MFS transporter	NA	NA	NA	NA
WP_004151613.1\|2562066_2565174_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6

DBSCAN-SWA_8

3220723 : 3260760

Tupanvirus(20.0%)

transposase,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002910404.1\|3220723_3221980_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_002910405.1\|3222250_3222862_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_004217879.1\|3222861_3223710_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_002910407.1\|3223893_3224841_+	ribose-phosphate diphosphokinase	A0A2K9L2G2	Tupanvirus	2.3e-44	37.5
WP_004152259.1\|3224965_3226645_+	C4-dicarboxylic acid transporter DauA	A0A2H4J153	uncultured_Caudovirales_phage	7.9e-24	23.4
WP_002910436.1\|3226645_3227692_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_002910437.1\|3227914_3228190_-	stress-induced protein YchH	NA	NA	NA	NA
WP_002910438.1\|3228462_3229047_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_002910443.1\|3229164_3230256_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_002910446.1\|3230338_3230548_-	DUF1869 domain-containing protein	NA	NA	NA	NA
WP_002910453.1\|3230749_3231664_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004152260.1\|3231795_3233211_-	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_004152261.1\|3233230_3233674_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_002910493.1\|3233676_3234213_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004152910.1\|3234193_3235210_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_002910495.1\|3235239_3237003_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004152262.1\|3237136_3240547_-	type VI secretion protein VasK	NA	NA	NA	NA
WP_004198077.1\|3240530_3241688_-	hypothetical protein	NA	NA	NA	NA
WP_002910497.1\|3241691_3241958_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_072093174.1\|3242255_3242441_-	hypothetical protein	NA	NA	NA	NA
WP_171815252.1\|3242701_3243004_-	hypothetical protein	NA	NA	NA	NA
WP_000019473.1\|3243061_3244042_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_077265050.1\|3244087_3244345_-	sulfatase modifying factor 1	NA	NA	NA	NA
WP_004217423.1\|3244366_3244483_-	hypothetical protein	NA	NA	NA	NA
WP_002910544.1\|3244528_3245422_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7H6	Microcystis_virus	6.7e-14	30.5
WP_002910547.1\|3245443_3245749_-	hypothetical protein	NA	NA	NA	NA
WP_072093244.1\|3245772_3246804_-	hypothetical protein	NA	NA	NA	NA
WP_002910551.1\|3247263_3247770_-	hypothetical protein	NA	NA	NA	NA
WP_004153085.1\|3247766_3248096_-	hypothetical protein	NA	NA	NA	NA
WP_004199326.1\|3248092_3248275_-	hypothetical protein	NA	NA	NA	NA
WP_022644641.1\|3248416_3249385_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	6.5e-180	96.3
WP_002910586.1\|3250990_3251500_-	hypothetical protein	NA	NA	NA	NA
WP_002910589.1\|3251489_3251642_-	hypothetical protein	NA	NA	NA	NA
WP_002910591.1\|3251736_3252243_-	hypothetical protein	NA	NA	NA	NA
WP_002910593.1\|3252239_3252749_-	hypothetical protein	NA	NA	NA	NA
WP_004152319.1\|3252749_3254105_-	S-type pyocin domain-containing protein	NA	NA	NA	NA
WP_004152317.1\|3257068_3258766_-	OmpA family protein	NA	NA	NA	NA
WP_004152316.1\|3258769_3259423_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002910645.1\|3259419_3260760_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_9

3663854 : 3671479

Escherichia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152482.1\|3663854_3664856_-	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	1.2e-30	28.6
WP_004152483.1\|3665049_3666216_-	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	4.1e-112	54.7
WP_004152484.1\|3666396_3666951_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	3.8e-52	58.2
WP_004152485.1\|3666965_3667856_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.8e-28	33.6
WP_004152486.1\|3667887_3668757_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.8e-111	67.0
WP_004152487.1\|3668783_3669848_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.4e-105	55.0
WP_004152488.1\|3670072_3671479_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	4.7e-38	28.7

DBSCAN-SWA_10

3708046 : 3714953

Bacillus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151135.1\|3708046_3709525_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	1.1e-29	28.3
WP_002912634.1\|3709521_3710244_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	6.4e-31	33.2
WP_002912635.1\|3710562_3711924_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	2.5e-206	94.5
WP_004151134.1\|3712166_3713063_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_002912638.1\|3713305_3714079_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-25	36.3
WP_004175147.1\|3714089_3714953_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5

DBSCAN-SWA_11

4014729 : 4088379

Salmonella_phage(40.0%)

integrase,terminase,tail,holin,transposase,protease,tRNA,capsid

attL 4020371:4020388|attR 4087368:4087385

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152006.1\|4014729_4016733_-\|tRNA	tRNA(Met) cytidine acetyltransferase	NA	NA	NA	NA
WP_002913800.1\|4016742_4017618_-	neutral zinc metallopeptidase	NA	NA	NA	NA
WP_002913801.1\|4017737_4018451_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A127KMU1	Cyanophage	1.1e-38	35.7
WP_002913802.1\|4018666_4019701_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_002913803.1\|4019717_4020596_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
4020371:4020388	attL	NA	NA	NA	NA
WP_002913804.1\|4020749_4021316_+	glycine cleavage system transcriptional repressor	NA	NA	NA	NA
WP_002913805.1\|4021319_4021790_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_002913806.1\|4021851_4022913_-	AI-2E family transporter	NA	NA	NA	NA
WP_004221267.1\|4022967_4023084_-	hypothetical protein	NA	NA	NA	NA
WP_002913807.1\|4023135_4024599_+\|protease	beta-barrel assembly-enhancing protease	NA	NA	NA	NA
WP_002913810.1\|4024608_4024968_+	arsenate reductase (glutaredoxin)	NA	NA	NA	NA
WP_002913812.1\|4025095_4026007_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	3.5e-74	58.8
WP_020947395.1\|4026003_4026705_-	DnaA inactivator Hda	NA	NA	NA	NA
WP_002913824.1\|4026803_4028090_-	uracil permease	Q9KX94	Enterobacteria_phage	1.9e-65	38.1
WP_002913827.1\|4028185_4028812_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_002913829.1\|4029029_4030463_-	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_002913833.1\|4030472_4031366_-	ROK family protein	NA	NA	NA	NA
WP_002913836.1\|4031629_4032667_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	8.2e-72	44.5
WP_004152007.1\|4032663_4033305_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	1.2e-28	41.1
WP_002913838.1\|4033485_4035546_+	polyphosphate kinase 1	NA	NA	NA	NA
WP_002913839.1\|4035549_4037082_+	exopolyphosphatase	NA	NA	NA	NA
WP_002913841.1\|4037135_4039364_-	sensor domain-containing phosphodiesterase	NA	NA	NA	NA
WP_004174861.1\|4039734_4039908_+	DUF2633 family protein	G9L6F2	Escherichia_phage	1.4e-16	78.8
WP_004221278.1\|4040004_4040916_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002913847.1\|4040989_4042222_+	MFS transporter	NA	NA	NA	NA
WP_004162150.1\|4042515_4043694_+	anaerobic sulfatase maturase	NA	NA	NA	NA
WP_004152009.1\|4043677_4045546_+	sulfatase-like hydrolase/transferase	A0A2P0VMN7	Tetraselmis_virus	2.6e-07	22.6
WP_004152707.1\|4045765_4046248_-	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	3.0e-61	80.6
WP_004152706.1\|4046244_4046874_-	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	3.1e-90	76.4
WP_004146393.1\|4046863_4047169_-\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	2.7e-39	82.4
WP_004146394.1\|4047155_4047560_-	membrane protein	T1SA79	Salmonella_phage	9.3e-56	84.1
WP_004229092.1\|4047683_4047836_-	hypothetical protein	A0A2H5BN82	Klebsiella_phage	1.9e-06	54.3
WP_004221284.1\|4047844_4050214_-\|tail	phage tail fibers	A0A2H5BN49	Klebsiella_phage	9.1e-268	79.5
WP_004152452.1\|4050365_4050662_+	hypothetical protein	T1SA06	Salmonella_phage	6.2e-25	65.5
WP_004152453.1\|4050752_4051010_+	DUF1902 domain-containing protein	A0A0M4R2Z9	Salmonella_phage	2.3e-12	54.1
WP_004152454.1\|4051013_4051211_+	type II toxin-antitoxin system HicA family toxin	A0A0M4RCZ9	Salmonella_phage	2.0e-19	69.8
WP_157833602.1\|4051319_4051508_+	ash family protein	NA	NA	NA	NA
WP_004152455.1\|4051591_4052287_+	hypothetical protein	A0A193GYJ9	Enterobacter_phage	4.4e-61	52.7
WP_004152456.1\|4052477_4052660_+	hypothetical protein	NA	NA	NA	NA
WP_004152457.1\|4052664_4053063_+	hypothetical protein	NA	NA	NA	NA
WP_004152458.1\|4053337_4053952_-	hypothetical protein	NA	NA	NA	NA
WP_004152459.1\|4053961_4057351_-	hypothetical protein	G9L6D4	Escherichia_phage	6.3e-121	42.0
WP_004152460.1\|4057350_4060095_-	hypothetical protein	A0A193GYI3	Enterobacter_phage	9.1e-94	39.2
WP_004152461.1\|4060107_4060605_-	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	5.7e-23	40.5
WP_004152462.1\|4060597_4061068_-	hypothetical protein	Q858G2	Salmonella_phage	7.3e-44	55.3
WP_004152463.1\|4061069_4063547_-	hypothetical protein	G9L6D0	Escherichia_phage	3.6e-267	56.5
WP_004153043.1\|4063546_4064158_-	hypothetical protein	T1SAQ2	Salmonella_phage	1.2e-46	48.8
WP_004152465.1\|4064206_4064485_-	hypothetical protein	T1SA01	Salmonella_phage	6.7e-21	58.9
WP_004152466.1\|4064477_4064870_-	hypothetical protein	T1SA71	Salmonella_phage	1.5e-55	89.9
WP_004152467.1\|4064879_4065887_-\|capsid	phage capsid protein	T1S9H9	Salmonella_phage	2.7e-181	92.5
WP_019404949.1\|4065899_4066577_-	peptidase	T1SAP9	Salmonella_phage	2.0e-50	63.6
WP_004152470.1\|4066579_4066885_-	hypothetical protein	Q2A090	Sodalis_phage	1.1e-16	51.3
WP_004152471.1\|4066881_4068561_-\|tail	tail protein	T1S9Z7	Salmonella_phage	3.4e-192	58.9
WP_004152472.1\|4068564_4068768_-	hypothetical protein	NA	NA	NA	NA
WP_004152473.1\|4069473_4069995_+	DUF2829 domain-containing protein	A0A1B0VMG3	Pseudomonas_phage	7.8e-47	55.2
WP_004164044.1\|4070038_4071514_-	hypothetical protein	Q858H3	Salmonella_phage	1.9e-279	92.9
WP_004152523.1\|4071510_4072095_-\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	2.4e-89	88.1
WP_004152524.1\|4072172_4072430_-	hypothetical protein	NA	NA	NA	NA
WP_004152525.1\|4072504_4072843_-	hypothetical protein	A0A193GYX4	Enterobacter_phage	4.7e-45	80.0
WP_004152526.1\|4072842_4073082_-	hypothetical protein	G8C7S3	Escherichia_phage	4.6e-10	48.0
WP_004152527.1\|4073074_4073743_-	DUF551 domain-containing protein	Q6UAT8	Klebsiella_phage	1.5e-05	52.5
WP_004141386.1\|4073739_4073952_-	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.1e-11	45.5
WP_004152528.1\|4073952_4074123_-	hypothetical protein	A0A2R2Z308	Escherichia_phage	2.5e-15	69.6
WP_004152529.1\|4074122_4074866_-	hypothetical protein	A6N3G8	Burkholderia_virus	1.5e-19	59.5
WP_004152530.1\|4074862_4075288_-	hypothetical protein	NA	NA	NA	NA
WP_004152531.1\|4075284_4075476_-	hypothetical protein	NA	NA	NA	NA
WP_004152532.1\|4075459_4075870_-	hypothetical protein	A0A2P1MXC5	Escherichia_phage	3.1e-14	42.2
WP_004152534.1\|4076062_4076410_-	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	5.0e-50	82.6
WP_004152535.1\|4076529_4077315_-	replication protein	A0A193GYX1	Enterobacter_phage	8.2e-133	87.4
WP_004152536.1\|4077311_4078079_-	primosomal protein	A0A193GZ86	Enterobacter_phage	3.4e-139	91.0
WP_004152537.1\|4078078_4078288_-	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.8e-26	78.3
WP_004152538.1\|4078434_4078668_-	hypothetical protein	T1SAR5	Salmonella_phage	9.2e-24	66.2
WP_004152539.1\|4078821_4079403_+	helix-turn-helix transcriptional regulator	Q858D7	Salmonella_phage	1.9e-65	64.8
WP_004164037.1\|4079623_4079773_+	hypothetical protein	G9L6A5	Escherichia_phage	7.9e-13	84.2
WP_004164029.1\|4079769_4080069_+	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	2.1e-20	54.5
WP_004152541.1\|4080065_4080965_+	YqaJ viral recombinase family protein	Q858E0	Salmonella_phage	1.5e-159	93.0
WP_004152542.1\|4080974_4081997_+	recombination protein RecT	Q858E1	Salmonella_phage	2.4e-180	95.3
WP_004152543.1\|4082048_4082297_+	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	1.1e-27	69.5
WP_004153052.1\|4082406_4082700_+	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	8.9e-32	71.1
WP_004152545.1\|4082692_4082851_+	DUF1317 family protein	T1SAR0	Salmonella_phage	1.9e-17	78.8
WP_004152546.1\|4082847_4083441_+	adenine methylase	T1SA14	Salmonella_phage	4.3e-110	92.4
WP_004152547.1\|4083437_4083620_+	hypothetical protein	NA	NA	NA	NA
WP_004152548.1\|4083616_4083808_+	hypothetical protein	NA	NA	NA	NA
WP_004152549.1\|4083824_4085075_-\|integrase	tyrosine-type recombinase/integrase	A0A1X9TCT6	Enterobacter_phage	1.4e-206	85.3
WP_004151979.1\|4085267_4086845_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_004151980.1\|4086912_4088379_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
4087368:4087385	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4159604 : 4241124

Salmonella_phage(70.59%)

head,portal,integrase,terminase,tail,lysis,plate,tRNA,capsid

attL 4204308:4204354|attR 4242785:4242831

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002914079.1\|4159604_4160342_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_002914082.1\|4160473_4161805_+	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	6.2e-48	31.9
WP_002914084.1\|4161850_4162234_-	autonomous glycyl radical cofactor GrcA	A0A193GZ98	Escherichia_phage	4.0e-32	79.3
WP_002914088.1\|4162547_4163237_+	uracil-DNA glycosylase	A0A077BCN4	Equid_alphaherpesvirus	1.3e-57	53.0
WP_002914089.1\|4163294_4164380_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_002914091.1\|4164583_4165009_+	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	6.0e-13	40.2
WP_002914092.1\|4165078_4165777_+\|tRNA	tRNA-uridine aminocarboxypropyltransferase	NA	NA	NA	NA
WP_004151994.1\|4165811_4168472_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_002914094.1\|4168592_4169948_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_002914095.1\|4169989_4170313_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_002914097.1\|4170316_4171615_-	MFS transporter	Q6JIH2	Burkholderia_virus	3.1e-44	31.5
WP_004150973.1\|4177580_4180154_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	6.9e-128	35.4
WP_002914109.1\|4180283_4181015_-	polyphenol oxidase	NA	NA	NA	NA
WP_002914110.1\|4181011_4181992_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_004145664.1\|4182123_4182861_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_002914111.1\|4183131_4183467_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_100250063.1\|4183573_4183621_+	pheA operon leader peptide PheL	NA	NA	NA	NA
WP_004150975.1\|4183721_4184882_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_002914112.1\|4184878_4185751_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_002914113.1\|4185813_4186935_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_002914114.1\|4186944_4188015_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	1.8e-90	51.5
WP_004174804.1\|4188357_4188867_+	YfiR family protein	NA	NA	NA	NA
WP_002914116.1\|4188859_4190083_+	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_002914117.1\|4190096_4190579_+	OmpA family protein	NA	NA	NA	NA
WP_002914118.1\|4190587_4191958_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_002914119.1\|4192014_4192473_-	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_002914145.1\|4192592_4192940_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_002914147.1\|4192979_4193747_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_004150977.1\|4193778_4194327_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_002914149.1\|4194345_4194594_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_002914152.1\|4194853_4196218_-	signal recognition particle protein	NA	NA	NA	NA
WP_002914153.1\|4196381_4197173_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_004149392.1\|4197192_4198479_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_002914155.1\|4198598_4199189_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_002914158.1\|4199313_4200192_+	NAD(+) kinase	NA	NA	NA	NA
WP_002914159.1\|4200278_4201940_+	DNA repair protein RecN	NA	NA	NA	NA
WP_002914160.1\|4202087_4202429_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_002914161.1\|4202495_4202786_-	RnfH family protein	NA	NA	NA	NA
WP_004188817.1\|4202775_4203252_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_002914164.1\|4203362_4203845_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
4204308:4204354	attL	NA	NA	NA	NA
WP_004150980.1\|4204448_4204826_+	hypothetical protein	NA	NA	NA	NA
WP_004150981.1\|4204853_4205072_-	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	1.9e-26	72.2
WP_004150982.1\|4205138_4206233_-	phage late control D family protein	E5G6Q3	Salmonella_phage	2.4e-170	83.6
WP_004150983.1\|4206229_4206715_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	5.2e-61	80.1
WP_004150984.1\|4206711_4209342_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	8.9e-115	41.9
WP_002896220.1\|4209334_4209454_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_004150985.1\|4209468_4209768_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	8.2e-33	78.0
WP_004150986.1\|4209820_4210336_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.4e-80	84.2
WP_004150987.1\|4210345_4211518_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.4e-207	91.5
WP_004150988.1\|4211666_4212740_-\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	6.6e-40	53.6
WP_004200602.1\|4212791_4213910_-	hypothetical protein	A0A248XD67	Klebsiella_phage	4.4e-55	38.0
WP_004150990.1\|4213919_4215869_-	CotH kinase family protein	Q6QI97	Burkholderia_phage	1.0e-06	38.9
WP_004152935.1\|4215870_4216542_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	3.2e-61	58.9
WP_004150992.1\|4216534_4217443_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	1.9e-109	68.9
WP_004150993.1\|4217429_4217792_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	8.4e-48	85.6
WP_004150994.1\|4217788_4218361_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.4e-76	70.8
WP_004150995.1\|4218455_4219322_+	hypothetical protein	NA	NA	NA	NA
WP_004150996.1\|4219344_4219791_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.5e-54	72.3
WP_004150997.1\|4219783_4220206_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	8.2e-63	83.2
WP_072093160.1\|4220168_4220327_-	hypothetical protein	A0A1S6KZX6	Salmonella_phage	9.0e-15	75.0
WP_004150998.1\|4220301_4220730_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	7.1e-54	82.5
WP_004150999.1\|4220726_4221110_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.9e-18	45.4
WP_004151000.1\|4221114_4221624_-	lysozyme	E5G6N1	Salmonella_phage	1.6e-81	85.2
WP_004134639.1\|4221604_4221820_-	hypothetical protein	E5G6N0	Salmonella_phage	6.1e-30	88.7
WP_004151001.1\|4221823_4222027_-\|tail	tail protein X	E5G6M9	Salmonella_phage	9.8e-30	89.6
WP_004151002.1\|4222026_4222491_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.5e-73	85.7
WP_004134644.1\|4222586_4223240_-\|terminase	terminase endonuclease subunit	A0A1S6KZX1	Salmonella_phage	1.9e-90	80.0
WP_004151003.1\|4223243_4224296_-\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	6.8e-175	91.0
WP_004151004.1\|4224312_4225146_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	4.4e-100	77.6
WP_019405037.1\|4225286_4227050_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	91.8
WP_004151006.1\|4227049_4228093_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.1e-172	85.6
WP_024940854.1\|4228149_4228419_-	hypothetical protein	D2IZW1	Enterococcus_phage	1.4e-15	41.3
WP_004151007.1\|4228940_4229942_+	hypothetical protein	NA	NA	NA	NA
WP_004151008.1\|4229941_4231021_+	hypothetical protein	NA	NA	NA	NA
WP_004151009.1\|4231007_4231691_+	hypothetical protein	NA	NA	NA	NA
WP_004151010.1\|4231786_4232020_-	DinI family protein	A0A0M4S6H1	Salmonella_phage	2.0e-34	96.1
WP_004151011.1\|4232031_4232220_-	hypothetical protein	A0A1S6L006	Salmonella_phage	2.2e-23	90.3
WP_004178082.1\|4232327_4233815_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004151012.1\|4234292_4236677_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	87.9
WP_004151013.1\|4236673_4237525_-	DNA adenine methylase	A0A1S6L011	Salmonella_phage	2.2e-115	75.4
WP_004151014.1\|4237521_4237749_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	5.1e-35	92.0
WP_004151016.1\|4237748_4237982_-	DUF2732 family protein	A0A1S6L021	Salmonella_phage	6.0e-31	90.9
WP_004144796.1\|4238049_4238388_-	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	6.2e-29	58.0
WP_004151017.1\|4238351_4238552_-	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	4.5e-19	68.8
WP_004151018.1\|4238559_4239069_-	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.1e-77	85.8
WP_001397669.1\|4239101_4239344_-	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	4.0e-38	98.8
WP_004151019.1\|4239466_4240096_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.4e-61	54.5
WP_004151020.1\|4240098_4241124_+\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	1.5e-190	93.8
4242785:4242831	attR	NA	NA	NA	NA

DBSCAN-SWA_13

4967632 : 5016475

uncultured_Caudovirales_phage(68.75%)

head,portal,terminase,tail,protease,tRNA,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002918465.1\|4967632_4968127_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.5e-26	54.8
WP_002918467.1\|4968130_4968769_-	stringent starvation protein A	NA	NA	NA	NA
WP_135801240.1\|4968738_4969023_-	hypothetical protein	NA	NA	NA	NA
WP_000829818.1\|4969080_4969473_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_002918559.1\|4969488_4969917_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_004144945.1\|4970182_4971310_-	cell division protein ZapE	NA	NA	NA	NA
WP_002918565.1\|4971500_4971899_+	DUF1043 family protein	NA	NA	NA	NA
WP_002918566.1\|4972072_4973440_+\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	6.0e-22	25.3
WP_002918568.1\|4973527_4974586_+	outer membrane-stress sensor serine endopeptidase DegS	NA	NA	NA	NA
WP_002918570.1\|4974722_4975661_-	malate dehydrogenase	NA	NA	NA	NA
WP_002918625.1\|4976075_4976546_+	transcriptional regulator ArgR	NA	NA	NA	NA
WP_002918626.1\|4976921_4977185_+	peroxide/acid stress response protein YhcN	NA	NA	NA	NA
WP_002918627.1\|4977283_4977550_+	peroxide/acid stress response protein YhcN	NA	NA	NA	NA
WP_002918629.1\|4977600_4977876_-	barstar family protein	NA	NA	NA	NA
WP_002918632.1\|4977955_4979923_-	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
WP_002918639.1\|4979928_4980861_-	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
WP_002918640.1\|4980868_4981072_-	AaeX family protein	NA	NA	NA	NA
WP_002918641.1\|4981203_4982133_+	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
WP_002918642.1\|4982168_4983614_-\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_004150952.1\|4983702_4987500_-	AsmA2 domain-containing protein YhdP	NA	NA	NA	NA
WP_002918644.1\|4987537_4989007_-	ribonuclease G	NA	NA	NA	NA
WP_002918646.1\|4989009_4989591_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_002918648.1\|4989598_4990087_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_004149974.1\|4990086_4991079_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_002918653.1\|4991149_4992193_-	rod shape-determining protein MreB	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
WP_002918686.1\|4992498_4994439_-	RNase E specificity factor CsrD	NA	NA	NA	NA
WP_002918687.1\|4994518_4994710_-	hypothetical protein	NA	NA	NA	NA
WP_002918688.1\|4994938_4995940_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
WP_002918689.1\|4995939_4996548_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
WP_002918732.1\|4996771_4997224_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_002918736.1\|4997246_4997714_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_002918738.1\|4997724_4999074_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_002918740.1\|4999184_4999427_+	YhdT family protein	NA	NA	NA	NA
WP_002918742.1\|4999416_5000868_+	sodium/pantothenate symporter	NA	NA	NA	NA
WP_002918745.1\|5000879_5001761_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_004144972.1\|5002118_5003084_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_000462905.1\|5003108_5003405_+	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
WP_004150954.1\|5003558_5003750_-	hypothetical protein	NA	NA	NA	NA
WP_004150955.1\|5003752_5005414_-\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
WP_000113647.1\|5005397_5005754_-\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
WP_004150957.1\|5005884_5006037_-	hypothetical protein	A0A2H4JCY9	uncultured_Caudovirales_phage	2.4e-17	88.0
WP_004150959.1\|5006029_5006473_-	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.8e-77	91.8
WP_001547824.1\|5006472_5006772_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
WP_004150961.1\|5006768_5007104_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
WP_004150962.1\|5007100_5008342_-\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-230	96.5
WP_001547826.1\|5008343_5008904_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
WP_001549743.1\|5008955_5010122_-\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
WP_004150963.1\|5010385_5010898_+	hypothetical protein	NA	NA	NA	NA
WP_004150964.1\|5010946_5011282_-	hypothetical protein	NA	NA	NA	NA
WP_004150965.1\|5011624_5013760_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
WP_001549749.1\|5013759_5014125_-	hypothetical protein	NA	NA	NA	NA
WP_004150966.1\|5014121_5014490_-	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
WP_004150967.1\|5014486_5014801_-	hypothetical protein	NA	NA	NA	NA
WP_001549752.1\|5014793_5014982_-	hypothetical protein	NA	NA	NA	NA
WP_106918304.1\|5014974_5015244_-	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	2.4e-44	94.4
WP_004150969.1\|5015695_5016475_-	phage antirepressor KilAC domain-containing protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009776

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

48 : 74631

Escherichia_phage(27.78%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012539983.1\|48_804_+	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	1.7e-135	95.2
WP_022644883.1\|891_2430_-\|transposase	IS66-like element ISKpn24 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.6e-281	94.7
WP_000612626.1\|2478_2826_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_007372134.1\|2822_3227_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.6e-68	97.8
WP_015632469.1\|4008_5214_+	AAA family ATPase	A0A077SL49	Escherichia_phage	4.0e-163	69.6
WP_022644882.1\|5213_6188_+	ParB/RepB/Spo0J family partition protein	A0A1B0V750	Salmonella_phage	9.4e-86	55.0
WP_022644881.1\|6269_7541_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	1.6e-149	63.5
WP_020805749.1\|7540_7972_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.6e-29	53.3
WP_001568038.1\|8204_9176_+	hypothetical protein	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
WP_022644880.1\|9178_9850_+	plasmid partitioning/stability family protein	NA	NA	NA	NA
WP_001568040.1\|9911_10142_+	hypothetical protein	NA	NA	NA	NA
WP_004152355.1\|10578_11280_+	DNA methylase	A0A2I7RE86	Vibrio_phage	7.1e-27	36.7
WP_001568042.1\|11279_11501_+	hypothetical protein	NA	NA	NA	NA
WP_022644879.1\|11510_11930_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_022644878.1\|11983_12751_+	hypothetical protein	NA	NA	NA	NA
WP_022644877.1\|13431_13860_+	antirestriction protein	A9J566	Pseudomonas_phage	2.2e-10	31.9
WP_013214014.1\|13902_14409_+	antirestriction protein ArdA	G9FHQ1	Rhodococcus_virus	1.2e-07	31.4
WP_001568047.1\|14451_14643_+	hypothetical protein	NA	NA	NA	NA
WP_032409268.1\|14830_15085_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	8.8e-12	50.7
WP_022644897.1\|15120_15441_+	hypothetical protein	NA	NA	NA	NA
WP_022644896.1\|16115_16658_+	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	1.7e-49	74.4
WP_022644895.1\|16706_16955_+	DUF905 domain-containing protein	NA	NA	NA	NA
WP_022644894.1\|17023_19024_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	3.2e-24	26.5
WP_015632482.1\|19068_19500_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_022644893.1\|19496_20225_+	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_015632484.1\|20221_20548_+	hypothetical protein	NA	NA	NA	NA
WP_087439983.1\|20736_22111_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.4e-79	74.1
WP_022644891.1\|22281_23322_+	ATP-binding protein	M4QMW8	Micromonas_pusilla_virus	9.5e-20	35.2
WP_162859354.1\|23527_25810_+	S8 family peptidase	NA	NA	NA	NA
WP_015065592.1\|26243_27776_-\|transposase	IS3-like element ISKpn38 family transposase	A0A1B1P773	Bacillus_phage	3.1e-51	39.8
WP_004196353.1\|27864_29205_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_032072095.1\|29460_29883_-	nickel resistance OB fold protein NcrY	NA	NA	NA	NA
WP_004196366.1\|30044_31175_-	Ni(II)/Co(II) efflux transporter permease subunit NcrC	NA	NA	NA	NA
WP_004196355.1\|31187_31457_-	nickel-sensing transcriptional repressor NcrB	NA	NA	NA	NA
WP_004196314.1\|31562_32861_-	MFS transporter	NA	NA	NA	NA
WP_004196325.1\|33094_33853_-	hypothetical protein	NA	NA	NA	NA
WP_004196315.1\|33906_34827_-	hypothetical protein	NA	NA	NA	NA
WP_004196359.1\|34889_35261_-	hypothetical protein	NA	NA	NA	NA
WP_004152397.1\|36172_37492_+\|transposase	IS1182-like element ISKpn6 family transposase	Q9MBP7	Staphylococcus_prophage	1.9e-12	24.2
WP_004152396.1\|37741_38623_-	carbapenem-hydrolyzing class A beta-lactamase KPC-3	A0A1B0VBP7	Salmonella_phage	2.8e-73	52.2
WP_004152394.1\|38941_39721_-	IS21-like element ISKpn7 family helper ATPase IstB	A0A2L1IVB6	Escherichia_phage	2.5e-89	61.8
WP_004199214.1\|39717_40743_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-87	50.3
WP_004152392.1\|40849_43879_-\|transposase	Tn3-like element Tn4401 family transposase	NA	NA	NA	NA
WP_004152391.1\|43988_45704_+	Tn3-like element Tn4401 family resolvase TnpR	NA	NA	NA	NA
WP_001217881.1\|46818_47376_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4
WP_014454105.1\|47609_48164_+	aminoglycoside N-acetyltransferase AAC(6')-Ib'	NA	NA	NA	NA
WP_001206315.1\|48233_49022_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_000722315.1\|49081_49906_+	oxacillin-hydrolyzing class D beta-lactamase OXA-9	NA	NA	NA	NA
WP_000027057.1\|50605_51466_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_000480968.1\|52186_53023_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_001082319.1\|53022_53826_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_001043260.1\|53886_54702_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_000954592.1\|55031_55208_+	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_000427619.1\|55389_56394_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_001067855.1\|58290_58995_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_025404032.1\|59030_59336_+	IncN plasmid KikA protein	NA	NA	NA	NA
WP_001452736.1\|59371_59683_+	hypothetical protein	NA	NA	NA	NA
WP_064577928.1\|59891_60380_+	restriction endonuclease	NA	NA	NA	NA
WP_001749967.1\|60384_60591_+	hypothetical protein	NA	NA	NA	NA
WP_072094655.1\|61002_62406_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	9.0e-106	50.6
WP_004098817.1\|62439_63654_-	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
WP_001389365.1\|63914_64679_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001144737.1\|64821_65088_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_004201280.1\|65308_65782_-	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	8.4e-16	28.9
WP_001067855.1\|66757_67462_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_002904004.1\|67598_68459_+	class A extended-spectrum beta-lactamase SHV-12	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|68479_69241_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002903955.1\|69502_70405_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_004199413.1\|71613_74631_-\|transposase	Tn3-like element IS3000 family transposase	A0A125RQ78	Bacillus_phage	5.5e-52	24.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP009777

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

498 : 36779

Escherichia_phage(38.46%)

protease,transposase,integrase

attL 108:119|attR 18553:18564

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
108:119	attL	NA	NA	NA	NA
WP_000845039.1\|498_1512_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001083725.1\|1656_2154_+	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_001336345.1\|2265_2556_+	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001206356.1\|2561_3353_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_000679427.1\|3516_3864_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|3857_4697_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_064765192.1\|4893_5097_+	hypothetical protein	NA	NA	NA	NA
WP_000427619.1\|5278_6283_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000184001.1\|6510_7716_+	chromate efflux transporter	NA	NA	NA	NA
WP_000130000.1\|7726_8032_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001389365.1\|8258_9023_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001137892.1\|9515_10100_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_000004159.1\|10099_11338_-	MFS transporter	NA	NA	NA	NA
WP_000219391.1\|11334_12240_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_001067855.1\|12361_13066_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000018329.1\|13216_14032_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
WP_044117068.1\|14221_14890_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.9e-130	99.5
WP_000427619.1\|15181_16186_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_004217321.1\|17520_18225_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_004153729.1\|19080_19908_+	phosphonate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.6e-20	37.6
18553:18564	attR	NA	NA	NA	NA
WP_004152695.1\|19904_20768_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004152694.1\|20776_21604_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_004152693.1\|21612_22623_+	phosphonate dehydrogenase PtxD	A0A1V0SBV6	Catovirus	1.4e-15	25.1
WP_004152692.1\|22616_23486_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000019473.1\|24694_25675_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_004118209.1\|26876_27140_-\|transposase	transposase	NA	NA	NA	NA
WP_004118208.1\|27154_27418_+	hypothetical protein	NA	NA	NA	NA
WP_004152118.1\|27661_27943_+	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	5.2e-05	38.2
WP_004152117.1\|27977_28547_+	small heat shock protein sHSP20	NA	NA	NA	NA
WP_004152116.1\|28661_31457_+	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	5.2e-129	41.0
WP_004152115.1\|31456_31654_+	hypothetical protein	NA	NA	NA	NA
WP_009483782.1\|31891_32641_+	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_004152113.1\|32627_33590_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_020314316.1\|35432_36779_-\|transposase	ISNCY family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

156282 : 211449

Stx2-converting_phage(23.08%)

integrase,transposase,bacteriocin

attL 153131:153148|attR 192581:192598

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
153131:153148	attL	NA	NA	NA	NA
WP_004178051.1\|156282_158604_+\|bacteriocin	klebicin B-related nuclease bacteriocin	NA	NA	NA	NA
WP_004152296.1\|158605_158884_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_009485932.1\|159224_159704_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	9.8e-20	35.2
WP_004199332.1\|160024_160303_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_004171457.1\|160519_160597_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_004152292.1\|160589_161447_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_032408946.1\|162893_165077_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_004152291.1\|165073_166390_-	ATP-binding protein	NA	NA	NA	NA
WP_004152290.1\|166393_168703_-	TerB N-terminal domain-containing protein	NA	NA	NA	NA
WP_003846917.1\|170408_171662_-	lactose permease	NA	NA	NA	NA
WP_004152287.1\|171713_174788_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	96.7
WP_004152286.1\|174909_175992_-	DNA-binding transcriptional repressor LacI	C6ZCU4	Enterobacteria_phage	6.8e-186	96.4
WP_004152284.1\|176452_177463_+	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_000427619.1\|177866_178871_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_166687952.1\|179125_179410_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004118251.1\|179740_180034_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.7e-49	96.9
WP_004152282.1\|180132_180900_-	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	9.8e-14	25.2
WP_004152281.1\|180900_181857_-	Fe(3+) dicitrate ABC transporter permease subunit FecD	NA	NA	NA	NA
WP_004118243.1\|181853_182852_-	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
WP_004118241.1\|182848_183751_-	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_004152280.1\|183795_186120_-	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
WP_004118237.1\|186205_187159_-	fec operon regulator FecR	NA	NA	NA	NA
WP_004118235.1\|187155_187677_-	RNA polymerase sigma factor FecI	NA	NA	NA	NA
WP_161989521.1\|188638_188851_-	hypothetical protein	NA	NA	NA	NA
WP_004118231.1\|188779_188947_+\|integrase	integrase	NA	NA	NA	NA
WP_004118840.1\|189231_190359_+	transporter substrate-binding protein	NA	NA	NA	NA
WP_004118229.1\|190355_190949_+	ANTAR domain-containing protein	NA	NA	NA	NA
WP_004152279.1\|190945_191794_+	ABC transporter permease	NA	NA	NA	NA
WP_004118227.1\|191793_192714_+	ABC transporter permease	NA	NA	NA	NA
192581:192598	attR	NA	NA	NA	NA
WP_004152278.1\|192726_194331_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004118225.1\|194375_195323_+	acetamidase/formamidase family protein	A0A1V0S8X7	Catovirus	9.6e-11	22.7
WP_004118832.1\|195330_197064_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.9e-15	29.6
WP_004152557.1\|200886_201234_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.0e-59	95.7
WP_020956879.1\|201230_201617_-\|transposase	transposase	B6DZU5	Stx2-converting_phage	1.1e-58	90.7
WP_004118217.1\|202164_202800_-	His-Xaa-Ser repeat protein HxsA	NA	NA	NA	NA
WP_000005560.1\|202796_203909_-	His-Xaa-Ser system radical SAM maturase HxsC	S5WIP3	Leptospira_phage	1.5e-47	33.8
WP_004118216.1\|203901_205290_-	His-Xaa-Ser system radical SAM maturase HxsB	S5VT21	Leptospira_phage	6.3e-51	29.0
WP_000333416.1\|205289_205562_-	His-Xaa-Ser system protein HxsD	NA	NA	NA	NA
WP_000412211.1\|207178_207838_+	type A-1 chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	8.4e-131	100.0
WP_000656305.1\|208038_208416_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001138064.1\|208482_211449_-\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009775

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009776

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP009777

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection