CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009461	Klebsiella pneumoniae strain XH209 chromosome, complete genome	1 crisprs	csa3,RT,WYL,cas3,DEDDh,DinG	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009461_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009461_1

4049627-4049721

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009461_1

>merge|NZ_CP009461|1|4049627-4049721|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP009461|1|1|4049627-4049721|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009461.1\|WP_002888332.1\|4052208_4053036_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP009461.1\|WP_002888345.1\|4048173_4049538_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP009461.1\|WP_023302314.1\|4041256_4043614_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP009461.1\|WP_002888347.1\|4047454_4047994_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP009461.1\|WP_023302315.1\|4049862_4051488_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP009461.1\|WP_004147026.1\|4053279_4055628_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP009461.1\|WP_002888337.1\|4051477_4052176_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP009461.1\|WP_023302313.1\|4037025_4038735_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP009461.1\|WP_002888324.1\|4057960_4058782_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP009461.1\|WP_002888320.1\|4060266_4060746_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP009461.1\|WP_004177424.1\|4038745_4040248_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP009461.1\|WP_002888353.1\|4040385_4041081_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP009461.1\|WP_004177427.1\|4046720_4047380_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP009461.1\|WP_023302316.1\|4056974_4057964_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP009461.1\|WP_004178574.1\|4043801_4046708_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP009461.1\|WP_002888321.1\|4059166_4060015_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP009461.1\|WP_004145972.1\|4035842_4036688_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP009461.1\|WP_002888323.1\|4058784_4059162_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP009461.1\|WP_002888329.1\|4055682_4056969_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP009461.1\|WP_020802792.1\|4036673_4036844_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009461.1\|WP_002888332.1\|4052208_4053036_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP009461.1\|WP_002888345.1\|4048173_4049538_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP009461.1\|WP_023302314.1\|4041256_4043614_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP009461.1\|WP_002888347.1\|4047454_4047994_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP009461.1\|WP_023302315.1\|4049862_4051488_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	2.22281e-172
NZ_CP009461.1\|WP_004147026.1\|4053279_4055628_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP009461.1\|WP_002888337.1\|4051477_4052176_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP009461.1\|WP_023302313.1\|4037025_4038735_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP009461.1\|WP_002888324.1\|4057960_4058782_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP009461.1\|WP_002888320.1\|4060266_4060746_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP009461.1\|WP_004177424.1\|4038745_4040248_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP009461.1\|WP_002888353.1\|4040385_4041081_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP009461.1\|WP_004177427.1\|4046720_4047380_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	7.5539e-160
NZ_CP009461.1\|WP_023302316.1\|4056974_4057964_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP009461.1\|WP_004178574.1\|4043801_4046708_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP009461.1\|WP_002888321.1\|4059166_4060015_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP009461.1\|WP_004145972.1\|4035842_4036688_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP009461.1\|WP_002888323.1\|4058784_4059162_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP009461.1\|WP_002888329.1\|4055682_4056969_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0

>NZ_CP009461.1|WP_002888345.1|4048173_4049538_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP009461.1|WP_002888347.1|4047454_4047994_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP009461.1|WP_004177427.1|4046720_4047380_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVALVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP009461.1|WP_004178574.1|4043801_4046708_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP009461.1|WP_023302314.1|4041256_4043614_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIERRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDALRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRTQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP009461.1|WP_002888353.1|4040385_4041081_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP009461.1|WP_004177424.1|4038745_4040248_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP009461.1|WP_023302313.1|4037025_4038735_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALCEQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>NZ_CP009461.1|WP_020802792.1|4036673_4036844_+|hypothetical-protein
MRFGHTRGSPRRYQWHQLSIFIILSLSALSRLRRRWEFGEKPAQQAKKAPVACIPP
>NZ_CP009461.1|WP_004145972.1|4035842_4036688_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP009461.1|WP_023302315.1|4049862_4051488_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLELSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEVHDAS
>NZ_CP009461.1|WP_002888337.1|4051477_4052176_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP009461.1|WP_002888332.1|4052208_4053036_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP009461.1|WP_004147026.1|4053279_4055628_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP009461.1|WP_002888329.1|4055682_4056969_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP009461.1|WP_023302316.1|4056974_4057964_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPGQPPVPQRAGTLTLLNVALNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP009461.1|WP_002888324.1|4057960_4058782_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP009461.1|WP_002888323.1|4058784_4059162_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP009461.1|WP_002888321.1|4059166_4060015_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP009461.1|WP_002888320.1|4060266_4060746_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1417011 : 1423915

Planktothrix_phage(33.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004175147.1\|1417011_1417875_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_004180550.1\|1417885_1418659_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_004151134.1\|1418898_1419795_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_023301761.1\|1420037_1421399_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	8.8e-207	94.5
WP_004175198.1\|1421717_1422440_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_038434483.1\|1422436_1423915_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_2

2384911 : 2392967

Escherichia_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160540602.1\|2384911_2386546_+	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	3.1e-182	55.8
WP_004176258.1\|2386600_2387866_+	MFS transporter	NA	NA	NA	NA
WP_001620097.1\|2387896_2388985_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_004176262.1\|2389071_2389332_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_004176269.1\|2389629_2390490_+	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|2390510_2391272_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_071843243.1\|2391532_2392354_+	hypothetical protein	A0A077SLF7	Escherichia_phage	4.0e-98	100.0
WP_002210516.1\|2392346_2392967_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_3

2773372 : 2843994

Klebsiella_phage(51.92%)

capsid,terminase,holin,head,tRNA,tail,integrase,portal,protease

attL 2800189:2800203|attR 2844334:2844348

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004892876.1\|2773372_2773873_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_002901080.1\|2773989_2774436_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_004140469.1\|2774419_2775214_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_074439533.1\|2775321_2776497_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_004140471.1\|2776528_2777221_-	CTP synthase	NA	NA	NA	NA
WP_020802835.1\|2777366_2777876_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_014343000.1\|2777880_2778219_+	DUF488 family protein	NA	NA	NA	NA
WP_004176548.1\|2778208_2778448_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_004176549.1\|2778748_2779762_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
WP_004150782.1\|2779819_2779921_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_004892898.1\|2779920_2779995_+	protein YoaJ	NA	NA	NA	NA
WP_004140488.1\|2780112_2780238_+	hypothetical protein	NA	NA	NA	NA
WP_004140489.1\|2780297_2780561_-	DUF2534 family protein	NA	NA	NA	NA
WP_004150783.1\|2780691_2781330_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_023302064.1\|2781419_2782334_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
WP_004148037.1\|2782795_2782915_-	hypothetical protein	NA	NA	NA	NA
WP_004150784.1\|2782995_2784039_-	type II asparaginase	NA	NA	NA	NA
WP_004140494.1\|2784341_2785550_+	HD domain-containing protein	NA	NA	NA	NA
WP_023302065.1\|2785623_2787408_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
WP_021313530.1\|2787414_2788305_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023302066.1\|2788425_2789934_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_020804938.1\|2789967_2790132_+	hypothetical protein	NA	NA	NA	NA
WP_004150790.1\|2790244_2790931_-	EAL domain-containing protein	NA	NA	NA	NA
WP_032409986.1\|2791328_2791508_-	hypothetical protein	NA	NA	NA	NA
WP_004150791.1\|2791547_2792180_-	DNA-binding protein	NA	NA	NA	NA
WP_004140506.1\|2792746_2792944_+	hypothetical protein	NA	NA	NA	NA
WP_004183659.1\|2793059_2794070_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_004140511.1\|2794066_2795473_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004179357.1\|2795528_2796416_-	manganese catalase family protein	NA	NA	NA	NA
WP_004140514.1\|2796432_2796939_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004148027.1\|2796965_2797460_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150795.1\|2797550_2797736_-	general stress protein	NA	NA	NA	NA
WP_137013050.1\|2797955_2798144_+	hypothetical protein	NA	NA	NA	NA
WP_004140529.1\|2798359_2799553_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_004140530.1\|2799665_2799893_+	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_019704434.1\|2799913_2800099_-	hypothetical protein	NA	NA	NA	NA
WP_048263900.1\|2800046_2800253_+	hypothetical protein	NA	NA	NA	NA
2800189:2800203	attL	NA	NA	NA	NA
WP_004150797.1\|2800341_2800665_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_004150798.1\|2800657_2801050_+	amino acid-binding protein	NA	NA	NA	NA
WP_004213085.1\|2801046_2801760_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004892953.1\|2802032_2802185_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_024623019.1\|2802363_2802735_-	hypothetical protein	K7PGV5	Enterobacterial_phage	3.5e-25	50.0
WP_038434515.1\|2803590_2804013_-	hypothetical protein	K7P834	Enterobacteria_phage	1.8e-25	44.5
WP_023307377.1\|2804183_2807960_-\|tail	tail fiber domain-containing protein	A0A2H5BNP5	Klebsiella_phage	4.1e-161	34.1
WP_038434516.1\|2808016_2811085_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	91.0
WP_017880229.1\|2811081_2811462_-	hypothetical protein	A0A286S2A6	Klebsiella_phage	4.6e-73	100.0
WP_024623174.1\|2811471_2811954_-	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	1.9e-79	91.2
WP_021312569.1\|2812134_2812605_-	hypothetical protein	A0A286S298	Klebsiella_phage	2.2e-64	68.4
WP_038434517.1\|2812604_2815145_-\|tail	phage tail length tape measure protein	A0A286S1S3	Klebsiella_phage	0.0e+00	72.9
WP_004899620.1\|2815206_2815584_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_038434518.1\|2815647_2815911_-	hypothetical protein	A0A286S1P2	Klebsiella_phage	1.8e-39	89.7
WP_038434519.1\|2815913_2816297_-\|tail	phage tail assembly protein	A0A286S1N4	Klebsiella_phage	2.7e-57	93.2
WP_000115125.1\|2816340_2816832_-	hypothetical protein	A0A286S1Q8	Klebsiella_phage	2.3e-88	100.0
WP_004216812.1\|2816888_2817254_-	DUF3168 domain-containing protein	A0A286S1R1	Klebsiella_phage	1.7e-61	92.6
WP_004143897.1\|2817250_2817790_-	HK97 gp10 family phage protein	A0A286S249	Klebsiella_phage	3.0e-94	98.9
WP_038434520.1\|2817782_2818115_-\|head	phage head closure protein	A0A286S2A2	Klebsiella_phage	2.6e-56	99.1
WP_038434521.1\|2818116_2818329_-	hypothetical protein	A0A286S2A5	Klebsiella_phage	1.1e-15	74.3
WP_017880223.1\|2818389_2818716_-\|head,tail	phage gp6-like head-tail connector protein	A0A286S294	Klebsiella_phage	7.5e-56	100.0
WP_044067369.1\|2818663_2818906_-	hypothetical protein	NA	NA	NA	NA
WP_038434522.1\|2818942_2820106_-\|capsid	phage major capsid protein	A0A286S1R4	Klebsiella_phage	3.8e-211	99.5
WP_004216821.1\|2820117_2820798_-\|head,protease	HK97 family phage prohead protease	A0A286S1N1	Klebsiella_phage	1.6e-124	100.0
WP_038434523.1\|2820803_2822081_-\|portal	phage portal protein	A0A286S1N5	Klebsiella_phage	5.3e-246	99.8
WP_004143904.1\|2822083_2823616_-\|terminase	terminase	A0A286S1M9	Klebsiella_phage	3.9e-296	100.0
WP_004143905.1\|2823625_2824060_-	hypothetical protein	A0A286S1P9	Klebsiella_phage	6.2e-74	100.0
WP_032412811.1\|2824182_2824392_-	hypothetical protein	A0A286N2R4	Klebsiella_phage	6.3e-24	84.1
WP_032412813.1\|2824404_2824695_-	HNH endonuclease	A0A286N2R3	Klebsiella_phage	5.8e-52	95.8
WP_038434524.1\|2824755_2824977_-	hypothetical protein	NA	NA	NA	NA
WP_032412817.1\|2825720_2825921_-	hypothetical protein	A0A1L6Z528	Klebsiella_phage	2.9e-18	73.3
WP_071843244.1\|2826298_2826478_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	3.9e-22	92.7
WP_032412821.1\|2826428_2826704_-	hypothetical protein	A0A286N2Q8	Klebsiella_phage	3.8e-08	89.0
WP_032412824.1\|2826700_2827048_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	1.2e-35	71.3
WP_032412827.1\|2827044_2827584_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	1.3e-100	97.8
WP_139108922.1\|2827580_2827880_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	1.0e-38	82.8
WP_023149836.1\|2828626_2829727_+	hypothetical protein	NA	NA	NA	NA
WP_023149835.1\|2829723_2830041_+	STAS-like domain-containing protein	NA	NA	NA	NA
WP_023149834.1\|2830040_2830502_+	hypothetical protein	NA	NA	NA	NA
WP_023149833.1\|2830538_2830883_-	antitermination protein Q lambdoid prophage DLP12	A0A0P0ZCW0	Stx2-converting_phage	3.0e-55	85.8
WP_038434526.1\|2830901_2831882_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.1e-134	67.2
WP_032412833.1\|2831894_2832272_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	2.3e-48	73.6
WP_038434527.1\|2832281_2833091_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	1.2e-110	69.3
WP_038434528.1\|2833087_2834056_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	4.3e-83	65.4
WP_001208720.1\|2834045_2834225_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	4.6e-15	73.1
WP_038434530.1\|2834462_2834924_-	hypothetical protein	K7PJS5	Enterobacterial_phage	4.9e-69	87.5
WP_071843245.1\|2834958_2835201_-	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.3e-25	80.3
WP_038434531.1\|2835298_2835994_+	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	2.5e-88	72.4
WP_038434532.1\|2836787_2837705_+	recombination-associated protein RdgC	A0A1W6JP69	Morganella_phage	2.0e-45	36.5
WP_038434533.1\|2837794_2838094_+	hypothetical protein	K7PJS4	Enterobacterial_phage	3.2e-13	47.6
WP_038434534.1\|2838093_2838879_+	hypothetical protein	C7BGF1	Burkholderia_phage	1.4e-63	54.1
WP_038434535.1\|2839006_2839399_+	hypothetical protein	A0A2H4N7F5	Pectobacterium_phage	4.0e-19	81.8
WP_032412086.1\|2839395_2839602_+	hypothetical protein	R9TRD3	Aeromonas_phage	1.4e-31	97.1
WP_038434536.1\|2839598_2840210_+	hypothetical protein	A0A075B8K3	Enterobacteria_phage	2.4e-18	34.3
WP_038434537.1\|2840382_2840751_+	hypothetical protein	A0A088CE95	Shigella_phage	1.2e-17	54.2
WP_023284952.1\|2840743_2840962_+	hypothetical protein	G8C7S3	Escherichia_phage	2.7e-09	53.4
WP_000089156.1\|2841262_2841499_+	excisionase	NA	NA	NA	NA
WP_000741346.1\|2841488_2842631_+\|integrase	tyrosine-type recombinase/integrase	Q77Z02	Phage_21	9.1e-173	82.2
WP_004150800.1\|2842743_2843994_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
2844334:2844348	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3083409 : 3092883

Brazilian_cedratvirus(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023302125.1\|3083409_3085131_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_072145323.1\|3085157_3085877_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3086230_3086449_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|3086579_3088859_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3088889_3089207_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3089532_3089754_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004150848.1\|3089830_3091771_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|3091767_3092883_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage