CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP009852	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4 plasmid pENT-e56, complete sequence	0 crisprs	DEDDh	0	1
NZ_CP009853	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4 plasmid pKPC-860, complete sequence	0 crisprs	NA	0	1
NZ_CP009851	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4 plasmid pENT-c88, complete sequence	0 crisprs	NA	0	2
NZ_CP009850	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4, complete genome	4 crisprs	RT,csa3,DinG,DEDDh,PD-DExK,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL	14	5

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2253 : 38884

Escherichia_phage(33.33%)

transposase,protease,integrase

attL 1523:1537|attR 39222:39236

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1523:1537	attL	NA	NA	NA	NA
WP_004187383.1\|2253_2994_-\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	9.5e-22	51.6
WP_040119731.1\|3012_3261_-	hypothetical protein	NA	NA	NA	NA
WP_040119732.1\|3257_3743_-	hypothetical protein	NA	NA	NA	NA
WP_040119733.1\|3739_4327_-	restriction endonuclease	NA	NA	NA	NA
WP_040119734.1\|4319_4568_-	helix-turn-helix transcriptional regulator	A0A248SLB9	Klebsiella_phage	1.2e-10	56.9
WP_040119735.1\|4564_5026_-	hypothetical protein	NA	NA	NA	NA
WP_023302505.1\|5161_5707_+	hypothetical protein	NA	NA	NA	NA
WP_040119736.1\|5859_6267_-	hypothetical protein	NA	NA	NA	NA
WP_023302504.1\|6268_6847_-	hypothetical protein	NA	NA	NA	NA
WP_040119737.1\|6824_7181_-	hypothetical protein	NA	NA	NA	NA
WP_045342057.1\|7707_8982_+	antitoxin RelB	NA	NA	NA	NA
WP_040119738.1\|8998_9682_+	hypothetical protein	NA	NA	NA	NA
WP_011091034.1\|9726_9945_+	hypothetical protein	NA	NA	NA	NA
WP_004187413.1\|9947_10157_+	hypothetical protein	NA	NA	NA	NA
WP_049866823.1\|10623_10863_+	hypothetical protein	NA	NA	NA	NA
WP_004187415.1\|11007_11328_+	hypothetical protein	NA	NA	NA	NA
WP_040119740.1\|11330_12179_+	3'-5' exonuclease	A0A1D9C9N8	Salinivibrio_phage	6.6e-27	38.9
WP_077255004.1\|12201_13506_-	translesion error-prone DNA polymerase V subunit UmuC	A0A1W6JNT0	Morganella_phage	1.3e-111	50.6
WP_049866821.1\|13454_13889_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.1e-29	55.3
WP_020277900.1\|13981_14347_-	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
WP_004187429.1\|14315_14573_-	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_040119742.1\|14665_15319_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_032451295.1\|15398_15782_+	DUF1496 domain-containing protein	NA	NA	NA	NA
WP_004187436.1\|15886_16282_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_040119761.1\|16326_17589_+	hypothetical protein	NA	NA	NA	NA
WP_004206886.1\|17599_18550_+	DsbC family protein	NA	NA	NA	NA
WP_004187443.1\|18562_20650_+	hypothetical protein	NA	NA	NA	NA
WP_000381802.1\|21329_21863_+	aminoglycoside nucleotidyltransferase ANT(2'')-Ia	NA	NA	NA	NA
WP_000027057.1\|22258_23119_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001217881.1\|23301_23859_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4
WP_071881521.1\|24020_24326_+	DUF4158 domain-containing protein	Q1MVP5	Enterobacteria_phage	7.3e-21	97.9
WP_001067855.1\|24216_24921_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_071538079.1\|24911_25094_+	hypothetical protein	NA	NA	NA	NA
WP_002904004.1\|25057_25918_+	class A extended-spectrum beta-lactamase SHV-12	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|25938_26700_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_137922728.1\|27027_28236_-	methyl-accepting chemotaxis protein	A0A1B0VAH3	Salmonella_phage	1.4e-51	100.0
WP_000608644.1\|28485_29748_+\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_088169311.1\|29911_30229_+	hypothetical protein	NA	NA	NA	NA
WP_012954666.1\|30237_30882_-	quinolone resistance pentapeptide repeat protein QnrB19	NA	NA	NA	NA
WP_001067855.1\|31559_32264_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_011152976.1\|32470_33130_+	type A-1 chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	4.2e-130	99.1
WP_032738601.1\|33330_33708_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001067855.1\|33955_34660_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000509966.1\|35286_35892_-	DNA resolvase	A0A1S5Y2X8	uncultured_archaeal_virus	5.5e-20	35.3
WP_001553819.1\|35986_38884_+\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	4.2e-182	37.8
39222:39236	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009851

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 17370

Enterobacteria_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001247892.1\|197_488_+	nucleotidyltransferase	NA	NA	NA	NA
WP_001293886.1\|484_886_+	DUF86 domain-containing protein	NA	NA	NA	NA
WP_000215515.1\|875_1232_+	cupin domain-containing protein	NA	NA	NA	NA
WP_000091613.1\|1486_1801_+	hypothetical protein	NA	NA	NA	NA
WP_052133427.1\|2227_3376_-	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	2.5e-122	64.0
WP_001159650.1\|3451_4219_-	DUF1883 domain-containing protein	S6BFN8	Thermus_phage	9.8e-30	46.4
WP_000160641.1\|4387_5002_+	TIR domain-containing protein	NA	NA	NA	NA
WP_001258875.1\|5042_5750_-	hypothetical protein	NA	NA	NA	NA
WP_004098835.1\|5777_6344_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	3.5e-77	82.6
WP_038421110.1\|6507_9516_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	64.3
WP_000509966.1\|10292_10898_-	DNA resolvase	A0A1S5Y2X8	uncultured_archaeal_virus	5.5e-20	35.3
WP_001553819.1\|10992_13890_+\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	4.2e-182	37.8
WP_017694275.1\|14692_15055_-	hypothetical protein	NA	NA	NA	NA
WP_032666434.1\|15651_17370_-	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	2.1e-27	28.0

DBSCAN-SWA_2

37796 : 45381

Wolbachia_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032666421.1\|37796_38324_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	3.3e-21	38.2
WP_032666420.1\|38355_38787_-	hypothetical protein	NA	NA	NA	NA
WP_032666419.1\|39266_40232_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	2.8e-58	42.4
WP_017694266.1\|40681_40921_+	hypothetical protein	I6PD82	Cronobacter_phage	1.6e-18	52.6
WP_032666418.1\|40922_41306_+	sOS mutagenesis and repair protein UmuD	A0A077SK24	Escherichia_phage	3.1e-24	46.9
WP_032666417.1\|41415_41907_-	hypothetical protein	NA	NA	NA	NA
WP_087451024.1\|42243_43364_-\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
WP_130983332.1\|43274_43460_+	hypothetical protein	NA	NA	NA	NA
WP_032672260.1\|43638_44340_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_032666416.1\|44883_45381_-	N-acetyltransferase	J9Q6J3	Salmonella_phage	8.6e-27	40.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP009853

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 55098

Burkholderia_phage(18.75%)

integrase,transposase,protease

attL 2606:2623|attR 9790:9807

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_108742639.1\|1118_1781_+	hypothetical protein	NA	NA	NA	NA
WP_001749988.1\|2132_2702_-	recombinase family protein	E5FFF9	Burkholderia_phage	5.2e-36	43.2
2606:2623	attL	NA	NA	NA	NA
WP_015344971.1\|2841_3126_-	hypothetical protein	NA	NA	NA	NA
WP_000845048.1\|3094_4108_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_004201280.1\|4263_4737_+	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	8.4e-16	28.9
WP_001144737.1\|4957_5224_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_001389365.1\|5366_6131_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_024139167.1\|6172_6385_+	hypothetical protein	NA	NA	NA	NA
WP_004098817.1\|6391_7606_+	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
WP_001288432.1\|7639_9073_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.0e-106	50.6
WP_001749967.1\|9454_9661_-	hypothetical protein	NA	NA	NA	NA
WP_064577928.1\|9665_10154_-	restriction endonuclease	NA	NA	NA	NA
9790:9807	attR	NA	NA	NA	NA
WP_001452736.1\|10362_10674_-	hypothetical protein	NA	NA	NA	NA
WP_001749965.1\|10709_11024_-	KikA protein	NA	NA	NA	NA
WP_001749964.1\|11020_11365_-	hypothetical protein	NA	NA	NA	NA
WP_024129965.1\|11380_11731_-	H-NS histone family protein	NA	NA	NA	NA
WP_001749963.1\|11794_12529_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_000440698.1\|12537_12819_+	hypothetical protein	NA	NA	NA	NA
WP_001749962.1\|12828_13122_+	hypothetical protein	NA	NA	NA	NA
WP_000496058.1\|13171_13489_+	hypothetical protein	NA	NA	NA	NA
WP_001749961.1\|13488_16089_+	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
WP_001749960.1\|16106_16820_+	hypothetical protein	NA	NA	NA	NA
WP_001749959.1\|16827_17055_+	IncN-type entry exclusion lipoprotein EexN	NA	NA	NA	NA
WP_001749958.1\|17070_18111_+	type IV secretion system protein	NA	NA	NA	NA
WP_001257173.1\|18193_18340_+	conjugal transfer protein TraN	NA	NA	NA	NA
WP_000646594.1\|18329_19028_+	type IV secretion system protein	NA	NA	NA	NA
WP_019706045.1\|19101_19923_+	conjugal transfer protein TraO	NA	NA	NA	NA
WP_000101710.1\|19922_21083_+	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_000128596.1\|21124_22120_+	conjugal transfer protein TraG	NA	NA	NA	NA
WP_000792636.1\|22119_22653_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	5.8e-21	33.9
WP_038421110.1\|25738_28747_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	64.3
WP_004098835.1\|28910_29477_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	3.5e-77	82.6
WP_001258875.1\|29504_30212_+	hypothetical protein	NA	NA	NA	NA
WP_000160641.1\|30252_30867_-	TIR domain-containing protein	NA	NA	NA	NA
WP_001159650.1\|31035_31803_+	DUF1883 domain-containing protein	S6BFN8	Thermus_phage	9.8e-30	46.4
WP_004152397.1\|32894_34214_+\|transposase	IS1182-like element ISKpn6 family transposase	Q9MBP7	Staphylococcus_prophage	1.9e-12	24.2
WP_004199234.1\|34463_35345_-	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
WP_001067855.1\|35869_36574_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_012561167.1\|37146_37512_-	hypothetical protein	NA	NA	NA	NA
WP_012561166.1\|37511_40748_-	conjugative relaxase	U5J9B0	Bacillus_phage	2.4e-05	27.3
WP_000342688.1\|40747_42277_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_001749975.1\|42278_42695_-	hypothetical protein	NA	NA	NA	NA
WP_020319858.1\|43467_43605_+	hypothetical protein	NA	NA	NA	NA
WP_001749973.1\|43613_44330_+	StdB	NA	NA	NA	NA
WP_000414913.1\|44331_44700_+	hypothetical protein	NA	NA	NA	NA
WP_048968061.1\|44992_45226_+	hypothetical protein	NA	NA	NA	NA
WP_001749971.1\|45336_45657_-	hypothetical protein	NA	NA	NA	NA
WP_000214483.1\|45711_45891_-	hypothetical protein	NA	NA	NA	NA
WP_000129958.1\|46617_47127_-	antirestriction protein ArdA	NA	NA	NA	NA
WP_012561126.1\|48479_48812_-	hypothetical protein	NA	NA	NA	NA
WP_001750002.1\|49020_49305_-	hypothetical protein	NA	NA	NA	NA
WP_001750003.1\|49373_49733_-	hypothetical protein	NA	NA	NA	NA
WP_000545925.1\|49729_50026_-	hypothetical protein	NA	NA	NA	NA
WP_000932975.1\|50911_51151_-	hypothetical protein	NA	NA	NA	NA
WP_000881513.1\|51160_51565_-	hypothetical protein	NA	NA	NA	NA
WP_000447669.1\|51622_52048_-	hypothetical protein	NA	NA	NA	NA
WP_000861760.1\|52462_52903_+	translesion error-prone DNA polymerase V autoproteolytic subunit MucA	A0A1W6JNS2	Morganella_phage	1.2e-27	48.8
WP_001749980.1\|52890_54156_+	translesion error-prone DNA polymerase V subunit MucB	F1C5A5	Cronobacter_phage	2.2e-119	53.8
WP_001452808.1\|54306_55098_+\|protease	zinc metalloprotease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP009850

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009850_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009850_1

3168670-3169477

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTG	CRT
TTTCTAAGCTGCCTGTACGGCAGTG	PILER-CR

13 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of NZ_CP009850_1

>merge|NZ_CP009850|1|3168670-3169477|CRISPRCasFinder,CRT,PILER-CR
TTGCTAAGCTGCGTGTACGGCAGTGGAGCTGAACAACTTCGGTGACTTCTGCGCATTTAATTTCTAAGCTGCCTGTACGGCAGTGCACTACCGGCTGGTGACGAGCTGACCCGGGATGATTTTCTAAGCTGCCTGTACGGCAGTGCACTTCCATGCTGTTCGTAATATCGGTGCGGCGGCTTTCTAAGCTGCCTGTACGGCAGTGCACATAGATTTTTCCGGTAGCCTCAAAATCCGCTTTTTCTAAGCTGCCTGTACGGCAGTGCACAGTTGAATTTATCTATATCAGCTAATCGCCAGTTTCTAAGCTGCCTGTACGGCAGTGCACCGGGAGGGTTTCCCTCAATCTCTACGGTCGCTTTTCTAAGCTGCCTGTACGGCAGTGCACCCATAGCAGACTGAGCACTGGCAGTACCTAATTTTCTAAGCTGCCTGTACGGCAGTGCACAAGCAGGGGTTCAGTAAAGAACAGCTAATTCATTTCTAAGCTGCCTGTACGGCAGTGCACTGACGTGGCGTTACTCAAACAAATCGCAGACTTTTCTAAGCTGCCTGTACGGCAGTGCACCCGGCGGCCAGTAAAATGGCGTCACAAATAACTTTCTAAGCTGCCTGTACGGCAGTGAACCCGCGATGGACTTGAGCGCGCAGAGCTGCGTTTTTCTAAGCTGCCTGTACGGCAGTGAACCCAGAAAACGACTGGTTTTAAGCCATCTGGACTTTCTAAGCTGCCTGTACGGCAGTGAACTGGCCGACTTTGTTTGTATTGGCAAACATTGTTTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP009850|1|1|3168670-3169477|CRISPRCasFinder
TTGCTAAGCTGCGTGTACGGCAGTGGAG	CTGAACAACTTCGGTGACTTCTGCGCATTTAA
TTTCTAAGCTGCCTGTACGGCAGTGCAC	TACCGGCTGGTGACGAGCTGACCCGGGATGAT
TTTCTAAGCTGCCTGTACGGCAGTGCAC	TTCCATGCTGTTCGTAATATCGGTGCGGCGGC
TTTCTAAGCTGCCTGTACGGCAGTGCAC	ATAGATTTTTCCGGTAGCCTCAAAATCCGCTT
TTTCTAAGCTGCCTGTACGGCAGTGCAC	AGTTGAATTTATCTATATCAGCTAATCGCCAG
TTTCTAAGCTGCCTGTACGGCAGTGCAC	CGGGAGGGTTTCCCTCAATCTCTACGGTCGCT
TTTCTAAGCTGCCTGTACGGCAGTGCAC	CCATAGCAGACTGAGCACTGGCAGTACCTAAT
TTTCTAAGCTGCCTGTACGGCAGTGCAC	AAGCAGGGGTTCAGTAAAGAACAGCTAATTCA
TTTCTAAGCTGCCTGTACGGCAGTGCAC	TGACGTGGCGTTACTCAAACAAATCGCAGACT
TTTCTAAGCTGCCTGTACGGCAGTGCAC	CCGGCGGCCAGTAAAATGGCGTCACAAATAAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCGCGATGGACTTGAGCGCGCAGAGCTGCGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCAGAAAACGACTGGTTTTAAGCCATCTGGAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGGCCGACTTTGTTTGTATTGGCAAACATTGT
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP009850|1|1|3168670-3169474|CRT
TTGCTAAGCTGCGTGTACGGCAGTG	GAGCTGAACAACTTCGGTGACTTCTGCGCATTTAA
TTTCTAAGCTGCCTGTACGGCAGTG	CACTACCGGCTGGTGACGAGCTGACCCGGGATGAT
TTTCTAAGCTGCCTGTACGGCAGTG	CACTTCCATGCTGTTCGTAATATCGGTGCGGCGGC
TTTCTAAGCTGCCTGTACGGCAGTG	CACATAGATTTTTCCGGTAGCCTCAAAATCCGCTT
TTTCTAAGCTGCCTGTACGGCAGTG	CACAGTTGAATTTATCTATATCAGCTAATCGCCAG
TTTCTAAGCTGCCTGTACGGCAGTG	CACCGGGAGGGTTTCCCTCAATCTCTACGGTCGCT
TTTCTAAGCTGCCTGTACGGCAGTG	CACCCATAGCAGACTGAGCACTGGCAGTACCTAAT
TTTCTAAGCTGCCTGTACGGCAGTG	CACAAGCAGGGGTTCAGTAAAGAACAGCTAATTCA
TTTCTAAGCTGCCTGTACGGCAGTG	CACTGACGTGGCGTTACTCAAACAAATCGCAGACT
TTTCTAAGCTGCCTGTACGGCAGTG	CACCCGGCGGCCAGTAAAATGGCGTCACAAATAAC
TTTCTAAGCTGCCTGTACGGCAGTG	AACCCGCGATGGACTTGAGCGCGCAGAGCTGCGTT
TTTCTAAGCTGCCTGTACGGCAGTG	AACCCAGAAAACGACTGGTTTTAAGCCATCTGGAC
TTTCTAAGCTGCCTGTACGGCAGTG	AACTGGCCGACTTTGTTTGTATTGGCAAACATTGT
TTTCTAAGCTGCCTGTACGGCAGTG

>NZ_CP009850|1|1|3168730-3169414|PILER-CR
TTTCTAAGCTGCCTGTACGGCAGTG	CACTACCGGCTGGTGACGAGCTGACCCGGGATGAT
TTTCTAAGCTGCCTGTACGGCAGTG	CACTTCCATGCTGTTCGTAATATCGGTGCGGCGGC
TTTCTAAGCTGCCTGTACGGCAGTG	CACATAGATTTTTCCGGTAGCCTCAAAATCCGCTT
TTTCTAAGCTGCCTGTACGGCAGTG	CACAGTTGAATTTATCTATATCAGCTAATCGCCAG
TTTCTAAGCTGCCTGTACGGCAGTG	CACCGGGAGGGTTTCCCTCAATCTCTACGGTCGCT
TTTCTAAGCTGCCTGTACGGCAGTG	CACCCATAGCAGACTGAGCACTGGCAGTACCTAAT
TTTCTAAGCTGCCTGTACGGCAGTG	CACAAGCAGGGGTTCAGTAAAGAACAGCTAATTCA
TTTCTAAGCTGCCTGTACGGCAGTG	CACTGACGTGGCGTTACTCAAACAAATCGCAGACT
TTTCTAAGCTGCCTGTACGGCAGTG	CACCCGGCGGCCAGTAAAATGGCGTCACAAATAAC
TTTCTAAGCTGCCTGTACGGCAGTG	AACCCGCGATGGACTTGAGCGCGCAGAGCTGCGTT
TTTCTAAGCTGCCTGTACGGCAGTG	AACCCAGAAAACGACTGGTTTTAAGCCATCTGGAC
TTTCTAAGCTGCCTGTACGGCAGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009850.1\|WP_023337013.1\|3172224_3173160_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP009850.1\|WP_000228469.1\|3161634_3162129_-\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP009850.1\|WP_038421207.1\|3171212_3172211_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP009850.1\|WP_023337016.1\|3170153_3170627_+\|RES-domain-containing-protein	unknown	unknown	gnl\|CDD\|227941
NZ_CP009850.1\|WP_045307508.1\|3178123_3178567_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009850.1\|WP_023337019.1\|3167289_3167994_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP009850.1\|WP_002211347.1\|3168278_3168497_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP009850.1\|WP_014883204.1\|3157066_3157681_-\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP009850.1\|WP_080297787.1\|3174087_3176184_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NZ_CP009850.1\|WP_023337017.1\|3169713_3170157_+\|DUF2384-domain-containing-protein	unknown	unknown	gnl\|CDD\|131346
NZ_CP009850.1\|WP_014883203.1\|3157809_3161499_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236669
NZ_CP009850.1\|WP_014883201.1\|3163756_3165523_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP009850.1\|WP_023337015.1\|3170648_3171203_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
NZ_CP009850.1\|WP_014883202.1\|3162673_3163642_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP009850.1\|WP_121496136.1\|3162465_3162696_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009850.1\|WP_014883205.1\|3155713_3157057_-\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_CP009850.1\|WP_038421208.1\|3178997_3181277_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP009850.1\|WP_088555711.1\|3173156_3174200_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|187866
NZ_CP009850.1\|WP_023337010.1\|3176180_3177164_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP009850.1\|WP_014883200.1\|3165522_3167244_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865

Protein	Function_ID	Function_description	E-value
NZ_CP009850.1\|WP_023337013.1\|3172224_3173160_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	8.48598e-128
NZ_CP009850.1\|WP_000228469.1\|3161634_3162129_-\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	1.61477e-117
NZ_CP009850.1\|WP_038421207.1\|3171212_3172211_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP009850.1\|WP_023337016.1\|3170153_3170627_+\|RES-domain-containing-protein	gnl\|CDD\|227941	COG5654, COG5654, Uncharacterized conserved protein [Function unknown].	6.88621e-28
NZ_CP009850.1\|WP_023337019.1\|3167289_3167994_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	8.18773e-140
NZ_CP009850.1\|WP_002211347.1\|3168278_3168497_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	2.9822e-48
NZ_CP009850.1\|WP_014883204.1\|3157066_3157681_-\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	5.60148e-116
NZ_CP009850.1\|WP_023337017.1\|3169713_3170157_+\|DUF2384-domain-containing-protein	gnl\|CDD\|131346	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family. Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. This family was proposed by Makarova, et al. (2009) to be the antitoxin component of a new class of type 2 toxin-antitoxin system, or addiction module. [Cellular processes, Other].	6.81067e-47
NZ_CP009850.1\|WP_014883203.1\|3157809_3161499_-\|hypothetical-protein	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP009850.1\|WP_014883201.1\|3163756_3165523_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP009850.1\|WP_023337015.1\|3170648_3171203_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	5.82137e-90
NZ_CP009850.1\|WP_014883202.1\|3162673_3163642_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP009850.1\|WP_080297787.1\|3174087_3176184_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP009850.1\|WP_014883205.1\|3155713_3157057_-\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP009850.1\|WP_038421208.1\|3178997_3181277_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP009850.1\|WP_088555711.1\|3173156_3174200_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	1.47085e-129
NZ_CP009850.1\|WP_023337010.1\|3176180_3177164_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_CP009850.1\|WP_014883200.1\|3165522_3167244_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0

>NZ_CP009850.1|WP_002211347.1|3168278_3168497_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLDTLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP009850.1|WP_023337019.1|3167289_3167994_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHNIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPAQFHLSRSMKRFHVKSPYRVTLNHAFGQVIEGCAQDRHEGTWITRDIITAYHQLHELGYAHSIEVWEDGILVGGMYGVAQGTLFCGESMFSRAVNASKTALLIFCQEFAQRGGNLIDCQVLNEHTASLGAVEIPRRQYIEHLDASRQQKLPRDFWIPRTLFMPNA
>NZ_CP009850.1|WP_014883200.1|3165522_3167244_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLTLGIVLAIVTLLASIGLLTLSGWFLSASAVAGFAGLYSFNYMLPAAGVRGTAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARFRQGELLNRVVADVDTLDHLYLRVISPIVGAFVVIVVVTLGLAVLDVPVALTLGGIMLLTLIILPPLFYRAGKSTGENLTRLRGDYRQQLTSWLQGQAELTIFGASKRYRARMESTELNWHEAQRRQSELTAFSQALMMLIGGVAVIAMLWLASGGVGGNPQPGPLIALFVFCALAAFEALAPVTGAFQHLGHVIASALRITQIAEQEPEVTFSAAQTAVPEQVTLTLDDVTFAYDKQAQNALEGITLSVDAGQRIAILGRTGCGKSTLLQLLTRAWDPQRGQIRFNNTLLTDFSEQALRKTVSVVPQRVHLFSATLRDNLLLAAPEASDDALRATLEQVGLQKLLEDDGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLMLLDEPTEGLDATTESQILDLLANVMAGKTVLMVTHRLRGLASFDRIIVMDNGHIIEQGSHAELLTKQGRYYQFKQRL
>NZ_CP009850.1|WP_014883201.1|3163756_3165523_+|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MEKTRQQELTRWLKQQSVISRRWLTISRVLGFVSGLLIVAQAWLLARILNHMIMENIPREALLMPFIVLVLIFILRAWVVWLRERVGFHAGQHIRYEIRRQVLDRLQEAGPAWIQGKPAGSWATLILEQIDDMHDYYARYLPQMALAVFVPLLIVIAIFPVNWMAALILMGTAPLIPLFMALVGMGAADANRRNFLALGRLSGHFLDRLRGMETLRIFGRGEAETENIRRASQDFRQRTMEVLRLAFLSSGVLEFFTSLSIALVAVYFGFSYLGALDFGHYGTAVTLSAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFLETPLAHPDRGDVTLNSKEPVTLDASDFCILSPEGKVLAGPLNFTLPAGKRVVLVGTSGSGKSSLLNALSGFMAYTGSLRINKTELRHLDPDAWRQQLSWVGQNPQLPASTLRENVLLARPDAREDELQSVLDRAWVSEFLPMLPQGIDTVVGDQSAGLSVGQAQRVAVARALLNPCQLMLLDEPAASLDAHSEQRVMAALNAASLQQTTLMVTHQLEGIADWDEIWVMENGRIVEQGDYASLIAAQGPFAALLANRQEDI
>NZ_CP009850.1|WP_014883202.1|3162673_3163642_+|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHAAKFETEILFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLANIASEVHLIHRRDTFRAEKILIKRLMDKVASGNIVLHTNRTLEEVTGDQMGVGGLRIRDTQNTDNVETLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSVPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLAEQGK
>NZ_CP009850.1|WP_121496136.1|3162465_3162696_+|hypothetical-protein
MPDIHYGGVLILILLPYKRAIFSSRRDNTAPDPSGVAIAYIESKTPVLFFYGNKFPTIQPIACQQQWGSHGHDQTQ
>NZ_CP009850.1|WP_000228469.1|3161634_3162129_-|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNAAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP009850.1|WP_014883203.1|3157809_3161499_-|hypothetical-protein
MSQEYTEDKEVTLSKLSSGRRLLEALLIVIALFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGVPGAWLADTLFFIFGVMAYTIPVIIIGGCWFAWRHRQNDDYIDYFAVSLRLIGALALILTSCGLAAINADDIWYFASGGVIGSLLSSALQPMLHSSGGTLALLCIWAAGLTLFTGWSWVSIAEKIGSFILTLLTFASNRTRRDDTWVDDDDYEEEYEEEDEAPVQRRESRRARILRGALARRQRVAEKFANPLGRKTDAALFSGKRMDEDEQVEYRAAGAAVDPDDVLFSGSRATPGEFDEYDPLLNGHTVTAPVAAAAAATTAAQAYAAPVEAVMPSAPVPPPESVIQQPHVAWQTAPGVHTPEPVIAPEPESYIPVQQEPWQQPYQPPQPEYEPQHYEQPVAQPYQEYVPEPVELAEPYAEPQPEPEVMEEVKPSRPPMYYFEEVEERRAREREQLAAWYQPVPEPAQEPVTKAPSVSVPPVDATPAVVPVAESVKQATVAAAAAAPVFSLATGGAPRPQVKEGIGPQLPRPNRVRVPTRRELASYGIKLPSQRMAEEKARESDYEDDADDMQQDELARQFAAQQNQRYGEEYQHDEPALDDEDEAAEAELARQFAATQQQRYSGEQPTGANPFSLSDFEFSPMKDLVDDGPSEPLFTPSVMPEAEPVRQQPAPQAYAQPQQPVQQPYAQPQQPQHQPPQFQQPAPQPQESLIHPLLMRNGDSRPLQRPSTPLPSLDLLTPPPAEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNTKFRDNPSPLTVVLGKDIAGDPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWSVNEMERRYKLMSALGVRNLAGYNEKIAQAMRMGRPIPDPYWKPGDSMDAQHPVLEKLPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQGGAESLLGMGDMLYSGPNSTSPVRVHGAFVRDEEVHAVVQDWKARGRPQYVDGITSDTESEGGGGGFDGGEELDPLFDQAVNFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP009850.1|WP_014883204.1|3157066_3157681_-|outer-membrane-lipoprotein-chaperone-LolA
MKKIAIACALLTSFVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGNAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFFNPFVEQATATWLKDATSNTPFMLIARNQASDWQQYNIKQNGDEFVLTPKGSNGNLKQFTINVSTNGTINQFGAVEQDDQRSSYQLKSQQNGAVDASKFTFTPPQGVTVDDQRNK
>NZ_CP009850.1|WP_014883205.1|3155713_3157057_-|replication-associated-recombination-protein-A
MSNLSLDFSDNAFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTIFFIGATTENPSFELNSALLSRARVYLLKSLTAEDIEKVLTQAMDDKARGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDAGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAAMSDARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEEYFPQEMAQTRYYHPTNRGLEGKIGEKLTWLAGQDQNSPIKRYR
>NZ_CP009850.1|WP_023337017.1|3169713_3170157_+|DUF2384-domain-containing-protein
MRTWIPAQKPADNALWRYAGLPANRGMRLIEFLNQGLPVSVLDNIHEWTAMSKADILRVTGINERNVARRKSAGRTLTPDESERVARFVRVLDAAVDYFGSKEEAWNWLQAPVRGLGNVAPVDLIATETGALEVTDLIGRLEHGVFA
>NZ_CP009850.1|WP_023337016.1|3170153_3170627_+|RES-domain-containing-protein
MIFYRLVTGRYASEAWSGSGANQYGGRWNHKGHPAVYVSTSISLASLEILVHVRKDTVLNQYQLFSIDIPDDQIDYLDKAWLPEDWQENPAPVSTMDLGTGWLQANSALALILPSCIIPYENNAILNPLHPSFHTALNSVQQLPFNFDTRLAEKTAP
>NZ_CP009850.1|WP_023337015.1|3170648_3171203_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYLEIRVLPDPEFNEEMLMAALMAKLHRALGLRGQGDIGISFPAHGIKPGPVLRLHGTHPALSELESLVWRKGLSDYCMSSDIQPVPVVKQWRCVSRVQVKSSAQRLMRRSVKKGWLTEEEALQRLQTMQEARTGLPWLNLRSLSTGQSFKLFIRHGDVLSVPVSGIFTTYGLSATATVPWF
>NZ_CP009850.1|WP_038421207.1|3171212_3172211_-|type-I-F-CRISPR-associated-protein-Csy3
MAKAPTAVKTASVLAFERKLATSDAVMYSGSWEGKAWQPIRIQEKAVRGTISNRLKNALTNDPAKLDAEIQKANLQRVDVAALPADADTLKVKFTLRVLGNLSMPSVCNDRTYQDELQQGIDGYISEHGFAELARRYATNLANGRFLWRNRVGAEKISVNVTGSNAWTFDAYNYALRDFSASDENLNALAQEIEKGLSGEGFVLLNVEAQVLLGAGQEIFPSQELVLDSNSSKSRLLYQVDSVAGMHSQKIGNAIRTIDTWHPKVDELGAIAVEPYGSVTSRGVACRQPKEKMDFYTLLDNWVTKGQKPDVEQQHYVMAVLIRGGVFGEKGE
>NZ_CP009850.1|WP_023337013.1|3172224_3173160_-|type-I-F-CRISPR-associated-protein-Csy2
MSSLILLRRVRVENANAIAGLTWGFPAITHFLGFAHALSRRLTETHGLRIDGCAVVSHEHQVHAHTSGRDYQFALTRNPLTREANTASFNEEGRMHMTVSLLLECQGEIPNGEYGQRDLAEYLSQVCPTLRLAGGIVVDVEAFTVMAMPSTDREMRRLQWLLMPGFALRDRSSWLVQHHQTLLENHPDATLLDAWLDFAALKIQAEMPEDGNLREGEPADWHVVPKPNPGYLVPLMTGYQRISELYAPGVVENARDAETPFAFTEAVYGVGEWCGLHRIRSLDEIFWRYRTTETGYYCQGAGAPVTSEPLN
>NZ_CP009850.1|WP_088555711.1|3173156_3174200_-|type-I-F-CRISPR-associated-protein-Csy1
MLNFGRRMAILSGSGLNICQTSPGFVWVNWPPLNRTLEGGDSLLASLKRGDHAALGAFTDDASQLREWIAGFSRALTPGKPASHKLAKQGYFPVGENYHLLSPLFATSLVHAMHQKMIASRFGDDVKAIWKARREKTWHPTPLILFPDSAEIHFGGTKPQNISYLNSVRGGRSWLLSCQPPKWKKSGKPPASLRSVFASGGQFDRRAKSHIQLLVSLLMKAGDYTNFRVREARDGYIDMIIDLLFEIASEFQRETAQNWTRNCPDLKPHQQLWLDPWRTKSDEAFRLEREKDDWQDAVAEDFALWLNARLRKSMPDVGAVEKREWETRERLRSNLREMEKIIQEALK
>NZ_CP009850.1|WP_080297787.1|3174087_3176184_-|type-I-F-CRISPR-associated-helicase-Cas3
MNVLIISRCTKRAREQSCQIIDQFAERTGDAAWQTTITMEGVTTLRKLLRKTARRNTAVACHWLKKNGQTELLWIVGNLRRFNAQGRVPTNRTTLQIIRNDSEHRWQSAESIALLAAIAGLFHDFGKAGMCFQQTLKGESKHICQPYRHEWISVRLFEAFVGVQTDEQWLASLTQLKAADEKAMLNALKMDTDKNCSLLGNLPPLAKVVVWLILSHHRLPQSHSTRPQLIYCEGWFEKQLNADWNSLNHKSTEKHPWKARDFKDVWKFPHGTPLKSKTWREKARQIGKRIRNLPALLHAGSLDNLLTLHLARLSLMLADHVYSSQPAYFGWQDDAVQCWANSDRQSGQLKQKLDEHNVGVAHLALLMGRSLSALRRSLPAIARHKTFRERAKDPRFNWQNRAWDVASSLREKSEEQGFFGINMASTGCGKTFANARIMYALAYEQTGCRFSVALGLRTLTLQTGQALQSRLGLDDDTLAVVTGAAAVKELYQGNDADDSSSASDETFFASHHYVHYEGATSHGIAQQWLAKEPALNRLVSAPVLVTTIDHLMPATEGVRGGRQIPAMLRLLTSDLVLDEPDDFDVDDLPALCRLVNWAGMLGARVLLSSATLPPALTEALFEAYREGRRAWQAACGQSDRPMGICCAWFDEYGAQSQDVADDAQFRQAHGDFVRQRIKHLPDQPRLRLGKLAAVEPHS
>NZ_CP009850.1|WP_023337010.1|3176180_3177164_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MSVKSITPTDLKTILHSKRANIYYLEKCRIQVNGGRVEYVTQEGKESFYWNIPIANTTAVMLGMGTSVTQMAMREFARAGVMVGFCGTDGTPLYSANEVDIDVSWLSPQSEYRPTAYLQNWVSFWFDEEKRLQAAKQFQFIRLQQIETQWAGARMQRETAFQPDKGTLEAILERARQGMENAQDHTSLMLKEAQLTKSLYKLASQTVGYGCFTRAKRGGGADMANRFLDQGNYLTYGLAAVAAWVTGIPHGLAVMHGKTRRGGLVFDIADLIKDALIMPQAFIAAMQGEDNQQFRQRCINAFQQADALDLMIATLQETSHLLAGVEK
>NZ_CP009850.1|WP_045307508.1|3178123_3178567_-|hypothetical-protein
MNMENQSYSPFYSELSLNPDLPTLAERCKLLSEILLDCKSLPQTQPVCRCLGAYLEEMKTGLTESMRDFQVVEFENEAEEPRQKEWLLEDTETKCDYCRALNHVLLVSHFDRDMLPHLTGLLHDFTHSMAADVVSPHDAGTGNSVIS
>NZ_CP009850.1|WP_038421208.1|3178997_3181277_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPNQASDSSNQVNNNEEQAGGEDRMENFTTNLNQLARVGGIDPLIGRDKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVIADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDVTEPSVEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPASKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLRTLGNRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTEVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDHAKNELTYDFQSAAKHKPEAAH

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Crispr_ID: NZ_CP009850_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009850_2

3177439-3177948

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR

8 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NZ_CP009850_2

>merge|NZ_CP009850|2|3177439-3177948|CRISPRCasFinder,CRT,PILER-CR
GAGAGGTGTTGCCTGTACGGCAGTGAACACTTCGCTCAGTTGTCGATGTTTCCTTTCGATTTTCTAAGCTGCCTGTACGGCAGTGAACCCATCGATGGTATCCCGTACAACCATCGTTATTTTCTAAGCTGCCTGTACGGCAGTGAACCCAGCTCTGCCAGTACATCTGGGACGAGTTCTTTTCTAAGCTGCCTGTACGGCAGTGAACCGTGACGCAATCCGTAGCGGAGAATGGACTGATTTCTAAGCTGCCTGTACGGCAGTGAACACAATCAGCACGCACCAGAGCACGGTACTTCGCTTTCTAAGCTGCCTGTACGGCAGTGAACTTTCAGAGACGACGGCGGCACGCCCGCCAGTTCTTTCTAAGCTGCCTGTACGGCAGTGAACGCCGCTGCGCGCAACTTCCCGTTACCGTGGCGTTTCTAAGCTGCCTGTACGGCAGTGAACTTTGAGCGTAGCGGAGGCGGCGCAGCATATAGTTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP009850|2|2|3177439-3177948|CRISPRCasFinder
GAGAGGTGTTGCCTGTACGGCAGTGAAC	ACTTCGCTCAGTTGTCGATGTTTCCTTTCGAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCATCGATGGTATCCCGTACAACCATCGTTAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCAGCTCTGCCAGTACATCTGGGACGAGTTCT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CGTGACGCAATCCGTAGCGGAGAATGGACTGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACAATCAGCACGCACCAGAGCACGGTACTTCGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTCAGAGACGACGGCGGCACGCCCGCCAGTTC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCCGCTGCGCGCAACTTCCCGTTACCGTGGCG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTGAGCGTAGCGGAGGCGGCGCAGCATATAG
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP009850|2|2|3177439-3177948|CRT
GAGAGGTGTTGCCTGTACGGCAGTGAAC	ACTTCGCTCAGTTGTCGATGTTTCCTTTCGAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCATCGATGGTATCCCGTACAACCATCGTTAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCAGCTCTGCCAGTACATCTGGGACGAGTTCT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CGTGACGCAATCCGTAGCGGAGAATGGACTGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACAATCAGCACGCACCAGAGCACGGTACTTCGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTCAGAGACGACGGCGGCACGCCCGCCAGTTC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCCGCTGCGCGCAACTTCCCGTTACCGTGGCG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTGAGCGTAGCGGAGGCGGCGCAGCATATAG
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP009850|2|2|3177499-3177948|PILER-CR
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCATCGATGGTATCCCGTACAACCATCGTTAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCAGCTCTGCCAGTACATCTGGGACGAGTTCT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CGTGACGCAATCCGTAGCGGAGAATGGACTGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACAATCAGCACGCACCAGAGCACGGTACTTCGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTCAGAGACGACGGCGGCACGCCCGCCAGTTC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCCGCTGCGCGCAACTTCCCGTTACCGTGGCG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTGAGCGTAGCGGAGGCGGCGCAGCATATAG
TTTCTAAGCTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009850.1\|WP_038421207.1\|3171212_3172211_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP009850.1\|WP_023337016.1\|3170153_3170627_+\|RES-domain-containing-protein	unknown	unknown	gnl\|CDD\|227941
NZ_CP009850.1\|WP_045307508.1\|3178123_3178567_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009850.1\|WP_023337015.1\|3170648_3171203_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
NZ_CP009850.1\|WP_002211347.1\|3168278_3168497_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP009850.1\|WP_023337007.1\|3185396_3186353_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|377343
NZ_CP009850.1\|WP_023337017.1\|3169713_3170157_+\|DUF2384-domain-containing-protein	unknown	unknown	gnl\|CDD\|131346
NZ_CP009850.1\|WP_023337004.1\|3189163_3190063_+\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287
NZ_CP009850.1\|WP_023337008.1\|3184121_3185237_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP009850.1\|WP_006174393.1\|3181304_3181625_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP009850.1\|WP_023337013.1\|3172224_3173160_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP009850.1\|WP_023337005.1\|3188297_3188993_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP009850.1\|WP_080297787.1\|3174087_3176184_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NZ_CP009850.1\|WP_008499993.1\|3181892_3182114_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NZ_CP009850.1\|WP_038421208.1\|3178997_3181277_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP009850.1\|WP_088555711.1\|3173156_3174200_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|187866
NZ_CP009850.1\|WP_023332529.1\|3182184_3184125_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP009850.1\|WP_023337019.1\|3167289_3167994_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP009850.1\|WP_014883194.1\|3186349_3188008_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP009850.1\|WP_023337010.1\|3176180_3177164_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676

Protein	Function_ID	Function_description	E-value
NZ_CP009850.1\|WP_038421207.1\|3171212_3172211_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP009850.1\|WP_023337016.1\|3170153_3170627_+\|RES-domain-containing-protein	gnl\|CDD\|227941	COG5654, COG5654, Uncharacterized conserved protein [Function unknown].	6.88621e-28
NZ_CP009850.1\|WP_023337015.1\|3170648_3171203_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	5.82137e-90
NZ_CP009850.1\|WP_002211347.1\|3168278_3168497_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	2.9822e-48
NZ_CP009850.1\|WP_023337007.1\|3185396_3186353_+\|DUF535-domain-containing-protein	gnl\|CDD\|377343	pfam04393, DUF535, Protein of unknown function (DUF535). Family member Shigella flexneri VirK is a virulence protein required for the expression, or correct membrane localization of IcsA (VirG) on the bacterial cell surface,. This family also includes Pasteurella haemolytica lapB, which is thought to be membrane-associated.	3.15678e-121
NZ_CP009850.1\|WP_023337017.1\|3169713_3170157_+\|DUF2384-domain-containing-protein	gnl\|CDD\|131346	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family. Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. This family was proposed by Makarova, et al. (2009) to be the antitoxin component of a new class of type 2 toxin-antitoxin system, or addiction module. [Cellular processes, Other].	6.81067e-47
NZ_CP009850.1\|WP_023337004.1\|3189163_3190063_+\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	1.09285e-112
NZ_CP009850.1\|WP_023337008.1\|3184121_3185237_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP009850.1\|WP_006174393.1\|3181304_3181625_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	9.90991e-48
NZ_CP009850.1\|WP_023337013.1\|3172224_3173160_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	8.48598e-128
NZ_CP009850.1\|WP_023337005.1\|3188297_3188993_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	1.52199e-145
NZ_CP009850.1\|WP_080297787.1\|3174087_3176184_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP009850.1\|WP_008499993.1\|3181892_3182114_+\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	6.50125e-48
NZ_CP009850.1\|WP_038421208.1\|3178997_3181277_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP009850.1\|WP_088555711.1\|3173156_3174200_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	1.47085e-129
NZ_CP009850.1\|WP_023332529.1\|3182184_3184125_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP009850.1\|WP_023337019.1\|3167289_3167994_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	8.18773e-140
NZ_CP009850.1\|WP_014883194.1\|3186349_3188008_-\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP009850.1\|WP_023337010.1\|3176180_3177164_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0

>NZ_CP009850.1|WP_023337010.1|3176180_3177164_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MSVKSITPTDLKTILHSKRANIYYLEKCRIQVNGGRVEYVTQEGKESFYWNIPIANTTAVMLGMGTSVTQMAMREFARAGVMVGFCGTDGTPLYSANEVDIDVSWLSPQSEYRPTAYLQNWVSFWFDEEKRLQAAKQFQFIRLQQIETQWAGARMQRETAFQPDKGTLEAILERARQGMENAQDHTSLMLKEAQLTKSLYKLASQTVGYGCFTRAKRGGGADMANRFLDQGNYLTYGLAAVAAWVTGIPHGLAVMHGKTRRGGLVFDIADLIKDALIMPQAFIAAMQGEDNQQFRQRCINAFQQADALDLMIATLQETSHLLAGVEK
>NZ_CP009850.1|WP_080297787.1|3174087_3176184_-|type-I-F-CRISPR-associated-helicase-Cas3
MNVLIISRCTKRAREQSCQIIDQFAERTGDAAWQTTITMEGVTTLRKLLRKTARRNTAVACHWLKKNGQTELLWIVGNLRRFNAQGRVPTNRTTLQIIRNDSEHRWQSAESIALLAAIAGLFHDFGKAGMCFQQTLKGESKHICQPYRHEWISVRLFEAFVGVQTDEQWLASLTQLKAADEKAMLNALKMDTDKNCSLLGNLPPLAKVVVWLILSHHRLPQSHSTRPQLIYCEGWFEKQLNADWNSLNHKSTEKHPWKARDFKDVWKFPHGTPLKSKTWREKARQIGKRIRNLPALLHAGSLDNLLTLHLARLSLMLADHVYSSQPAYFGWQDDAVQCWANSDRQSGQLKQKLDEHNVGVAHLALLMGRSLSALRRSLPAIARHKTFRERAKDPRFNWQNRAWDVASSLREKSEEQGFFGINMASTGCGKTFANARIMYALAYEQTGCRFSVALGLRTLTLQTGQALQSRLGLDDDTLAVVTGAAAVKELYQGNDADDSSSASDETFFASHHYVHYEGATSHGIAQQWLAKEPALNRLVSAPVLVTTIDHLMPATEGVRGGRQIPAMLRLLTSDLVLDEPDDFDVDDLPALCRLVNWAGMLGARVLLSSATLPPALTEALFEAYREGRRAWQAACGQSDRPMGICCAWFDEYGAQSQDVADDAQFRQAHGDFVRQRIKHLPDQPRLRLGKLAAVEPHS
>NZ_CP009850.1|WP_088555711.1|3173156_3174200_-|type-I-F-CRISPR-associated-protein-Csy1
MLNFGRRMAILSGSGLNICQTSPGFVWVNWPPLNRTLEGGDSLLASLKRGDHAALGAFTDDASQLREWIAGFSRALTPGKPASHKLAKQGYFPVGENYHLLSPLFATSLVHAMHQKMIASRFGDDVKAIWKARREKTWHPTPLILFPDSAEIHFGGTKPQNISYLNSVRGGRSWLLSCQPPKWKKSGKPPASLRSVFASGGQFDRRAKSHIQLLVSLLMKAGDYTNFRVREARDGYIDMIIDLLFEIASEFQRETAQNWTRNCPDLKPHQQLWLDPWRTKSDEAFRLEREKDDWQDAVAEDFALWLNARLRKSMPDVGAVEKREWETRERLRSNLREMEKIIQEALK
>NZ_CP009850.1|WP_023337013.1|3172224_3173160_-|type-I-F-CRISPR-associated-protein-Csy2
MSSLILLRRVRVENANAIAGLTWGFPAITHFLGFAHALSRRLTETHGLRIDGCAVVSHEHQVHAHTSGRDYQFALTRNPLTREANTASFNEEGRMHMTVSLLLECQGEIPNGEYGQRDLAEYLSQVCPTLRLAGGIVVDVEAFTVMAMPSTDREMRRLQWLLMPGFALRDRSSWLVQHHQTLLENHPDATLLDAWLDFAALKIQAEMPEDGNLREGEPADWHVVPKPNPGYLVPLMTGYQRISELYAPGVVENARDAETPFAFTEAVYGVGEWCGLHRIRSLDEIFWRYRTTETGYYCQGAGAPVTSEPLN
>NZ_CP009850.1|WP_038421207.1|3171212_3172211_-|type-I-F-CRISPR-associated-protein-Csy3
MAKAPTAVKTASVLAFERKLATSDAVMYSGSWEGKAWQPIRIQEKAVRGTISNRLKNALTNDPAKLDAEIQKANLQRVDVAALPADADTLKVKFTLRVLGNLSMPSVCNDRTYQDELQQGIDGYISEHGFAELARRYATNLANGRFLWRNRVGAEKISVNVTGSNAWTFDAYNYALRDFSASDENLNALAQEIEKGLSGEGFVLLNVEAQVLLGAGQEIFPSQELVLDSNSSKSRLLYQVDSVAGMHSQKIGNAIRTIDTWHPKVDELGAIAVEPYGSVTSRGVACRQPKEKMDFYTLLDNWVTKGQKPDVEQQHYVMAVLIRGGVFGEKGE
>NZ_CP009850.1|WP_023337015.1|3170648_3171203_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYLEIRVLPDPEFNEEMLMAALMAKLHRALGLRGQGDIGISFPAHGIKPGPVLRLHGTHPALSELESLVWRKGLSDYCMSSDIQPVPVVKQWRCVSRVQVKSSAQRLMRRSVKKGWLTEEEALQRLQTMQEARTGLPWLNLRSLSTGQSFKLFIRHGDVLSVPVSGIFTTYGLSATATVPWF
>NZ_CP009850.1|WP_023337016.1|3170153_3170627_+|RES-domain-containing-protein
MIFYRLVTGRYASEAWSGSGANQYGGRWNHKGHPAVYVSTSISLASLEILVHVRKDTVLNQYQLFSIDIPDDQIDYLDKAWLPEDWQENPAPVSTMDLGTGWLQANSALALILPSCIIPYENNAILNPLHPSFHTALNSVQQLPFNFDTRLAEKTAP
>NZ_CP009850.1|WP_023337017.1|3169713_3170157_+|DUF2384-domain-containing-protein
MRTWIPAQKPADNALWRYAGLPANRGMRLIEFLNQGLPVSVLDNIHEWTAMSKADILRVTGINERNVARRKSAGRTLTPDESERVARFVRVLDAAVDYFGSKEEAWNWLQAPVRGLGNVAPVDLIATETGALEVTDLIGRLEHGVFA
>NZ_CP009850.1|WP_002211347.1|3168278_3168497_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLDTLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP009850.1|WP_023337019.1|3167289_3167994_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHNIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPAQFHLSRSMKRFHVKSPYRVTLNHAFGQVIEGCAQDRHEGTWITRDIITAYHQLHELGYAHSIEVWEDGILVGGMYGVAQGTLFCGESMFSRAVNASKTALLIFCQEFAQRGGNLIDCQVLNEHTASLGAVEIPRRQYIEHLDASRQQKLPRDFWIPRTLFMPNA
>NZ_CP009850.1|WP_045307508.1|3178123_3178567_-|hypothetical-protein
MNMENQSYSPFYSELSLNPDLPTLAERCKLLSEILLDCKSLPQTQPVCRCLGAYLEEMKTGLTESMRDFQVVEFENEAEEPRQKEWLLEDTETKCDYCRALNHVLLVSHFDRDMLPHLTGLLHDFTHSMAADVVSPHDAGTGNSVIS
>NZ_CP009850.1|WP_038421208.1|3178997_3181277_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPNQASDSSNQVNNNEEQAGGEDRMENFTTNLNQLARVGGIDPLIGRDKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVIADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDVTEPSVEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPASKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLRTLGNRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTEVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDHAKNELTYDFQSAAKHKPEAAH
>NZ_CP009850.1|WP_006174393.1|3181304_3181625_-|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEDKVRDALKPPSMYKVMLMNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYRGKAICGIFTAEVAETKVAMVNDYARENEHPLLCTLEKA
>NZ_CP009850.1|WP_008499993.1|3181892_3182114_+|cold-shock-like-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASLIVPIEAETVA
>NZ_CP009850.1|WP_023332529.1|3182184_3184125_-|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTALLELKDIRRSYPSGDGPVEVLKGISLRVEAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVSTLDGDALAKLRREHFGFIFQRYHLLSHLNAAQNVEVPAVYAGVERKKRLERAKTLLTRLGLAERVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDQGHTVIIVTHDPQVAAQAERIIEIHDGELVSNPPPRASRAAAPKEALPASTGWGQFSSGFREALNMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPGKDFGDDEPQYQQALKYDDLAAIQKQPWVNSATPAVSQNLRLRVGNVDVAASANGVSGDYFNVYGMTFSEGATFNAEQLAGRAQVVVLDANSRRQLFPNKASVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYTTISGRIMGQSWLNSITVRVKEGYDSALAEQQLERLLTLRHGKKDFFTWNMDGLLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAMGIALSMMIAFALQLFLPGWEIGFSPVAIITAFLCSTFTGILFGWLPARNAARLDPVDALARE
>NZ_CP009850.1|WP_023337008.1|3184121_3185237_-|macrolide-transporter-subunit-MacA
MNLKGKRRTLFLLLAVVILVGGFWLWQVLNAPVPQYRTLIVRPGELQQNVLATGKLDALRKVDVGAQVSGQLKTLSVEIGDKVKKGQLLGVIDPEQAENQIREVEATLMELRAQRAQALAERNLAQVTLTRQQALAKTQAISKQDLDTATTELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTQIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQNAWFTVLGDPQTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPQGVLRLDMTAQVHIQLTGVKNVLTIPLSALGESAGDNRYKVKVLRNGETRDREVVIGARNDTDVVVMKGLEEGEEVVVSESLPGAAK
>NZ_CP009850.1|WP_023337007.1|3185396_3186353_+|DUF535-domain-containing-protein
MSSIVDTPYSPLTQPASGWQLFKNLALGKLTPGLAWQNPAYRRKFVLRSLAAPVTTSRLLTRLAKQPRLMQILQAQPGLPCRMHRPWLTVNMERQHALESLSWHYQTMSRQLPATLLQGYLSKQGATLLTLTGKDEQHFAVRLCADAFMDKEGEATLVFCDDQNTVLAEITFTLCPLAGKSTLFIGGLQGAKAHVPHERIQKATKACHGLFPKRLLVETAMTLGAAFPVEQIVAVSNDTHIYRSWRYRKKKEGKLLADYDSFWLSLGGEKQDSGNFMLPLVMPRKPMEEIASKKRSEYRRRYELLDSLIQQVNQATRG
>NZ_CP009850.1|WP_014883194.1|3186349_3188008_-|ATP-dependent-endonuclease
MLLERVEIVGFRGINRLSLQLEQNNVLIGENAWGKSSLLDALTLLLSPEDDLYHFVHDDFWFPPGDVTGREKHLHIILTFRESEPGRHRVRRFRPLSPCWVPCDDDFHRIFYRLEGEMAENEGVLTLREFLDEKANPIPLDNIDDLARHLTRLTPVLRLRDARFMRRIRNGTVPNMPEVEVTARELDFLARELVSRPQNLTDGQIRQGLSAMVQLLEHYFSEQGTSESRHRLMRRRSHDEQRSWRYLDIINRMIDRPGGRTHRVILLGLFSTLLQAKGTVRLDRDARPLLLVEDPETRLHPIMLSVAWHLLNLLPLQRITTTNSGELLSMTPVEHICRLVRESSRVSAYRLGPGGLNAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLIKFARRMGIEWHVLVDGDEAGKKYASTVRSLLNNEREEERDHLTMLPAMDMEHFMYRQGFDDVFHRIAMVPVDVPMNMRRVIAKAIHRSSKPDLAIEVATEAGRRGVEAVPTLLRKMFSRVLWLARGRAD
>NZ_CP009850.1|WP_023337005.1|3188297_3188993_+|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFVGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKDVIGYIVAQVVGGIIAAGVLYAIASGKAGFDAAASGFASNGFGEHSPGGYSMLSAIVIEIVLTAGFLLVIHGATDKHVPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWLFWVMPIIGGILGGVLYRTLLEKRD
>NZ_CP009850.1|WP_023337004.1|3189163_3190063_+|lysine-exporter-LysO-family-protein
MFSGLLIILLPLIAGYLIPLRQESALRLINRFLSGIVYLILFFMGISLAFLDNLSANLLSILHYSAVTVTVILLCNIAALLWLERTIPWKNHHHQEKLPSRIAMALESLKLCGVVVLGFLLGLTGWAFLQHATEASEYTLIFLLFLIGIQLRNNGMTLKQIVLNRRGMIIAVMVVASSMVAGVMNAFILDLPLKTGLAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGLEMVPAAIVHGFILSLLVPILMAFFSA

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Crispr_ID: NZ_CP009850_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009850_3

3192981-3193188

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP009850_3

>merge|NZ_CP009850|3|3192981-3193188|CRISPRCasFinder,CRT,PILER-CR
TATGGTTGCTGCGTGTACGGCAGTGAACATTATAAAAACGCGCATATGCGGGCAAAAGACTTTCTAAGCTGCCTGTACGGCAGTGAACCCGGCCCGGGCGAGCTTATCCATCCGTGGTTCTTTCTAAGCTGCCTGTACGGCAGTGAACATAGACTGCCGCCTTGCTCATTCTCGCGAGTGTTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP009850|3|3|3192981-3193188|CRISPRCasFinder
TATGGTTGCTGCGTGTACGGCAGTGAAC	ATTATAAAAACGCGCATATGCGGGCAAAAGAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCGGCCCGGGCGAGCTTATCCATCCGTGGTTC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATAGACTGCCGCCTTGCTCATTCTCGCGAGTG
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP009850|3|3|3192981-3193188|CRT
TATGGTTGCTGCGTGTACGGCAGTGAAC	ATTATAAAAACGCGCATATGCGGGCAAAAGAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCGGCCCGGGCGAGCTTATCCATCCGTGGTTC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATAGACTGCCGCCTTGCTCATTCTCGCGAGTG
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP009850|3|3|3193041-3193188|PILER-CR
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCGGCCCGGGCGAGCTTATCCATCCGTGGTTC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATAGACTGCCGCCTTGCTCATTCTCGCGAGTG
TTTCTAAGCTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009850.1\|WP_006174393.1\|3181304_3181625_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP009850.1\|WP_023337000.1\|3193939_3195658_+\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
NZ_CP009850.1\|WP_023336997.1\|3198237_3199251_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_CP009850.1\|WP_023337008.1\|3184121_3185237_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP009850.1\|WP_023337007.1\|3185396_3186353_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|377343
NZ_CP009850.1\|WP_014883170.1\|3206046_3206778_-\|type-II-secretion-system-protein-GspC	unknown	unknown	gnl\|CDD\|273770
NZ_CP009850.1\|WP_023337004.1\|3189163_3190063_+\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287
NZ_CP009850.1\|WP_023336999.1\|3195696_3196698_+\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710
NZ_CP009850.1\|WP_014883183.1\|3201312_3201753_-\|type-III-secretion-system-invasion-protein-IagB	unknown	unknown	gnl\|CDD\|185228
NZ_CP009850.1\|WP_023337002.1\|3191870_3192839_+\|NADH-oxidoreductase	unknown	unknown	gnl\|CDD\|236735
NZ_CP009850.1\|WP_045307506.1\|3204167_3206033_-\|type-II-secretion-system-secretin-GspD	unknown	unknown	gnl\|CDD\|274175
NZ_CP009850.1\|WP_023337005.1\|3188297_3188993_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP009850.1\|WP_023337001.1\|3193353_3193788_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|311556
NZ_CP009850.1\|WP_023337003.1\|3190207_3191860_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP009850.1\|WP_008499993.1\|3181892_3182114_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NZ_CP009850.1\|WP_023336998.1\|3196708_3198148_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187556
NZ_CP009850.1\|WP_023336996.1\|3199355_3201179_-\|endochitinase	unknown	unknown	gnl\|CDD\|381595
NZ_CP009850.1\|WP_023332529.1\|3182184_3184125_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP009850.1\|WP_014883194.1\|3186349_3188008_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP009850.1\|WP_038421209.1\|3207078_3208644_+\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|225806

Protein	Function_ID	Function_description	E-value
NZ_CP009850.1\|WP_006174393.1\|3181304_3181625_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	9.90991e-48
NZ_CP009850.1\|WP_023337000.1\|3193939_3195658_+\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP009850.1\|WP_023336997.1\|3198237_3199251_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	1.23782e-52
NZ_CP009850.1\|WP_023337008.1\|3184121_3185237_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP009850.1\|WP_023337007.1\|3185396_3186353_+\|DUF535-domain-containing-protein	gnl\|CDD\|377343	pfam04393, DUF535, Protein of unknown function (DUF535). Family member Shigella flexneri VirK is a virulence protein required for the expression, or correct membrane localization of IcsA (VirG) on the bacterial cell surface,. This family also includes Pasteurella haemolytica lapB, which is thought to be membrane-associated.	3.15678e-121
NZ_CP009850.1\|WP_014883170.1\|3206046_3206778_-\|type-II-secretion-system-protein-GspC	gnl\|CDD\|273770	TIGR01713, Type_II_secretion_system_protein_C, type II secretion system protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	2.34315e-30
NZ_CP009850.1\|WP_023337004.1\|3189163_3190063_+\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	1.09285e-112
NZ_CP009850.1\|WP_023336999.1\|3195696_3196698_+\|low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	0
NZ_CP009850.1\|WP_014883183.1\|3201312_3201753_-\|type-III-secretion-system-invasion-protein-IagB	gnl\|CDD\|185228	PRK15328, PRK15328, type III secretion system invasion protein IagB.	3.40358e-90
NZ_CP009850.1\|WP_023337002.1\|3191870_3192839_+\|NADH-oxidoreductase	gnl\|CDD\|236735	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional.	0
NZ_CP009850.1\|WP_045307506.1\|3204167_3206033_-\|type-II-secretion-system-secretin-GspD	gnl\|CDD\|274175	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D. In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking].	9.21183e-179
NZ_CP009850.1\|WP_023337005.1\|3188297_3188993_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	1.52199e-145
NZ_CP009850.1\|WP_023337001.1\|3193353_3193788_-\|DoxX-family-protein	gnl\|CDD\|311556	pfam07681, DoxX, DoxX. These proteins appear to have some sequence similarity with pfam04173 but their function is unknown.	1.1896e-10
NZ_CP009850.1\|WP_023337003.1\|3190207_3191860_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP009850.1\|WP_008499993.1\|3181892_3182114_+\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	6.50125e-48
NZ_CP009850.1\|WP_023336998.1\|3196708_3198148_+\|SDR-family-oxidoreductase	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	6.87822e-141
NZ_CP009850.1\|WP_023336996.1\|3199355_3201179_-\|endochitinase	gnl\|CDD\|381595	cd00325, chitinase_GH19, Glycoside hydrolase family 19, chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Glycoside hydrolase family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases, but they are smaller in size due to certain deletions. Despite lacking any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the prokaryotic/eukaryotic divergence.	3.72438e-71
NZ_CP009850.1\|WP_023332529.1\|3182184_3184125_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP009850.1\|WP_014883194.1\|3186349_3188008_-\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP009850.1\|WP_038421209.1\|3207078_3208644_+\|peptidoglycan-binding-protein	gnl\|CDD\|225806	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion].	0.000407686

>NZ_CP009850.1|WP_023337002.1|3191870_3192839_+|NADH-oxidoreductase
MTMPTSQCPWRMQVHHIHQETPDVWTLSLICHDYYPYRAGQYALVSVRHSADTLRAYTISSTPGVSEYITLTIRRIDDGAGSQWLTRDVKRGDYIWLSDAQGDFTCDDKAEDKFLLLAAGCGVTPIMSMRRWLAKNRPQADVQVIFSVRSPEDVIFAEEWRNYPVTLVAEHNAVHGFVPGRLSRELLQSVPDIAHRTVMTCGPAPYMDIVEKEVKALGVTRFFKEQFFTPVAEAATSGIQFTKLQPAQTFFGRVGTTLLEALESNKVPVVAACRAGVCGCCKTKVVSGEYTVTSTMTLSDAEIAEGYVLACSCHPQGDLVLA
>NZ_CP009850.1|WP_023337003.1|3190207_3191860_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAFKAREYGIVDHYVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLNADANARVDNPMSELQLASDDLGDLQRQAADFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFRVMSILDAGETSTYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLKQTEGTGVNVYTHGEMLPAHGYPELRKFKHLIGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVSHLEGDNFGPVIAQAQQMAGFPYSEIPHLITVGFGRETLLGAADSLIDLVSREKLRHIFLVGGCDGARGERNYFTDFATSVPDDCLILTLACGKYRFNKLDFGNIEGLPRLIDAGQCNDAYSSIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVTNIVTGPTAPGFLTPDLLAVLNEKFGLRSVTNVEDDMKQLLSA
>NZ_CP009850.1|WP_023337004.1|3189163_3190063_+|lysine-exporter-LysO-family-protein
MFSGLLIILLPLIAGYLIPLRQESALRLINRFLSGIVYLILFFMGISLAFLDNLSANLLSILHYSAVTVTVILLCNIAALLWLERTIPWKNHHHQEKLPSRIAMALESLKLCGVVVLGFLLGLTGWAFLQHATEASEYTLIFLLFLIGIQLRNNGMTLKQIVLNRRGMIIAVMVVASSMVAGVMNAFILDLPLKTGLAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGLEMVPAAIVHGFILSLLVPILMAFFSA
>NZ_CP009850.1|WP_023337005.1|3188297_3188993_+|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFVGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKDVIGYIVAQVVGGIIAAGVLYAIASGKAGFDAAASGFASNGFGEHSPGGYSMLSAIVIEIVLTAGFLLVIHGATDKHVPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWLFWVMPIIGGILGGVLYRTLLEKRD
>NZ_CP009850.1|WP_014883194.1|3186349_3188008_-|ATP-dependent-endonuclease
MLLERVEIVGFRGINRLSLQLEQNNVLIGENAWGKSSLLDALTLLLSPEDDLYHFVHDDFWFPPGDVTGREKHLHIILTFRESEPGRHRVRRFRPLSPCWVPCDDDFHRIFYRLEGEMAENEGVLTLREFLDEKANPIPLDNIDDLARHLTRLTPVLRLRDARFMRRIRNGTVPNMPEVEVTARELDFLARELVSRPQNLTDGQIRQGLSAMVQLLEHYFSEQGTSESRHRLMRRRSHDEQRSWRYLDIINRMIDRPGGRTHRVILLGLFSTLLQAKGTVRLDRDARPLLLVEDPETRLHPIMLSVAWHLLNLLPLQRITTTNSGELLSMTPVEHICRLVRESSRVSAYRLGPGGLNAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLIKFARRMGIEWHVLVDGDEAGKKYASTVRSLLNNEREEERDHLTMLPAMDMEHFMYRQGFDDVFHRIAMVPVDVPMNMRRVIAKAIHRSSKPDLAIEVATEAGRRGVEAVPTLLRKMFSRVLWLARGRAD
>NZ_CP009850.1|WP_023337007.1|3185396_3186353_+|DUF535-domain-containing-protein
MSSIVDTPYSPLTQPASGWQLFKNLALGKLTPGLAWQNPAYRRKFVLRSLAAPVTTSRLLTRLAKQPRLMQILQAQPGLPCRMHRPWLTVNMERQHALESLSWHYQTMSRQLPATLLQGYLSKQGATLLTLTGKDEQHFAVRLCADAFMDKEGEATLVFCDDQNTVLAEITFTLCPLAGKSTLFIGGLQGAKAHVPHERIQKATKACHGLFPKRLLVETAMTLGAAFPVEQIVAVSNDTHIYRSWRYRKKKEGKLLADYDSFWLSLGGEKQDSGNFMLPLVMPRKPMEEIASKKRSEYRRRYELLDSLIQQVNQATRG
>NZ_CP009850.1|WP_023337008.1|3184121_3185237_-|macrolide-transporter-subunit-MacA
MNLKGKRRTLFLLLAVVILVGGFWLWQVLNAPVPQYRTLIVRPGELQQNVLATGKLDALRKVDVGAQVSGQLKTLSVEIGDKVKKGQLLGVIDPEQAENQIREVEATLMELRAQRAQALAERNLAQVTLTRQQALAKTQAISKQDLDTATTELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTQIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQNAWFTVLGDPQTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPQGVLRLDMTAQVHIQLTGVKNVLTIPLSALGESAGDNRYKVKVLRNGETRDREVVIGARNDTDVVVMKGLEEGEEVVVSESLPGAAK
>NZ_CP009850.1|WP_023332529.1|3182184_3184125_-|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTALLELKDIRRSYPSGDGPVEVLKGISLRVEAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVSTLDGDALAKLRREHFGFIFQRYHLLSHLNAAQNVEVPAVYAGVERKKRLERAKTLLTRLGLAERVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDQGHTVIIVTHDPQVAAQAERIIEIHDGELVSNPPPRASRAAAPKEALPASTGWGQFSSGFREALNMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPGKDFGDDEPQYQQALKYDDLAAIQKQPWVNSATPAVSQNLRLRVGNVDVAASANGVSGDYFNVYGMTFSEGATFNAEQLAGRAQVVVLDANSRRQLFPNKASVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYTTISGRIMGQSWLNSITVRVKEGYDSALAEQQLERLLTLRHGKKDFFTWNMDGLLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAMGIALSMMIAFALQLFLPGWEIGFSPVAIITAFLCSTFTGILFGWLPARNAARLDPVDALARE
>NZ_CP009850.1|WP_008499993.1|3181892_3182114_+|cold-shock-like-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASLIVPIEAETVA
>NZ_CP009850.1|WP_006174393.1|3181304_3181625_-|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEDKVRDALKPPSMYKVMLMNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYRGKAICGIFTAEVAETKVAMVNDYARENEHPLLCTLEKA
>NZ_CP009850.1|WP_023337001.1|3193353_3193788_-|DoxX-family-protein
MVKSLLIAVNEKLSCVDLGKLLLRLAVGGLMLFHGLHKLFGGVGFISGMLVEKGLPGFIAYGVLIGEVVAPMLIIVGLFTRPAALMLAFTMIVAWLMVGMGETFALDKVGAWAIESLVYFFIGSLAVAFLGAGRFALGKAPAWR
>NZ_CP009850.1|WP_023337000.1|3193939_3195658_+|ubiquinone-dependent-pyruvate-dehydrogenase
MKLTVAAYIAKTLEQADVKRIWGVTGDSLNGLSDSLNKMKTIEWMPTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVIPGDVALKAAPEGASTHWYHAPQPVVTPAEEELKKLAQLLRYSSNIALMCGSGCAGAHKELLEFAGKLKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLILLGTQFPYRAFYPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLAALLPLLEEKTDRAFLDKALSDYRDARKGLDDLAKPSDKAIHPQYLAQQISHFADDDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAKATAPERQVVAMCGDGGFSMLMGDFLSVVQMKLPLKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASDVDEALQRAFSIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELAKTNWLR
>NZ_CP009850.1|WP_023336999.1|3195696_3196698_+|low-specificity-L-threonine-aldolase
MIDLRSDTVTRPSRAMLEEMMAAPVGDDVYGDDPTVNALQRYAAELSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQGAHNYLYEAGGAAVLGSIQPQPIDAAPDGTLPLDKVAAKIKADDIHFARTKLLSLENTHNGKVLPREYLKAAWDFTRERKLGLHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNADYIKRANRWRKMTGGGMRQAGILAAAGLYALKNNVARLKDDHDNAAWMATQLREIGADVMRHDTNMLFIRVGDDHAAALGEFMKARGVLINASPVMRLVMHLDVNREQLAEVVKHWQAFLQR
>NZ_CP009850.1|WP_023336998.1|3196708_3198148_+|SDR-family-oxidoreductase
MPQRILVLGASGYIGQHLTTALSQRGHQVLAAARNTDRLQKLALPGVTCHNVDLNWPKALPALLEGVDTFYYLVHSMGEGGDFIAHERQVALNVRDALLQTPVKQVIFLSSLQAPESEQSDHLRARQLTADTLRGANIPVTELRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPAEQHRVLEAAGPEVLSYQQQFEHFMRVSGRRRWLIPIPFPTRWISVWFLNVITSVPPTTAKALIQGLKHDLLADDRELRALIPQDLIRFDDAVRNTLKEEEQLVNSSDWGYDAQAFARWRPEYGYYPKQAGCTVKTSASLEALWEVVNQIGGKERYFFGNLLWQTRGTMDLLVGHRLAKGRPARPYLEVGDAVDSWKVIIVEPEKQLALLFGMKAPGLGRLCFTLKDKGDRRELDVRAWWHPHGMPGLFYWLFMIPAHLFIFRGMAKRIAQLAEQKTKITH
>NZ_CP009850.1|WP_023336997.1|3198237_3199251_+|NAD(P)-dependent-oxidoreductase
MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLQKMGAEFVHADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQEAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDVQEDFRPARFACEFARSKAASEEVIDLLAQSNPHTRFTVLRPQSLFGPHDKVFIPRLAQMMHHYGSVLLPRGGDALVDMTYYENAVHAMWLASQSDCDKLISGRAYNITNGEPCTLRSIVQRLIDELQIDCRIRSVPYPMLDMIARSMERFGSKAAKEPALTHYGVSKLNFDFTLDISRAENELGYRPVVTLDEGIVRTAAWLRDHGKLHR
>NZ_CP009850.1|WP_023336996.1|3199355_3201179_-|endochitinase
MNKRTLLSVLVAGACVAPFMAQAASLQATTSEPYTMNASDLAKKEKELTSFPLMDAVKETIKTLDNAQVELIEPGRAANPENVKRVEGIVKASDWEYLFPLRAQAYTYSNFLKAVGKFPALCKTYNDGRDSDAICRKELATMFAHFAQETGGHESWRPEAEWRQALVHVREMGWSEGQKGGYNGECNPDVWQGQTWPCGKDKDGDFLSYFGRGAKQLSYNYNYGPFSEAMYGDVRTLLDKPELVADTWLNLASAIFFFAYPQPPKPSMLQVIDGTWQPNDHDKANGLVPGFGVTTQIINGGVECGGPTEIAQSENRIKYYKEFANYLKVPVPANEVLGCANMKQFDEGGAGALKIYWEQDWGWSADTPSGETYSCQLVGYQTPFSAFKEGDYSKCVQKFFNVNIVNDDGSVTPDETPVTPTPTPSEDETPAPAPVPDETPAEPAVVNHAPVAHIAGPIGAVEAGAHVSLSAEGSTDADGNALTYTWRSQDGQTVTGQDKAVVTFTAPESATAQQIEISLTVSDGELSSTTSYLLNVKAKAAPSQDEGTSGDYAAWSANSKYKAGDIVNNHGKLFQCKPFPYSGWCNNAPAYYEPGAGLAWSDAWTAL
>NZ_CP009850.1|WP_014883183.1|3201312_3201753_-|type-III-secretion-system-invasion-protein-IagB
MKKLIFLLLIISQSALANCWDKAAHYYHVDPYLLYAIANVESGMNPYAVGRNHDGTRDVGLMQINSSHFSALESRGIDEYRLITEPCTSIMVGASILSSMIKVYGYNWEAVGAYNAGLKKENYPQRMIYAHKVWKKYQELKATANE
>NZ_CP009850.1|WP_045307506.1|3204167_3206033_-|type-II-secretion-system-secretin-GspD
MKKFPWACVALTALSLYSGSLFAANFSASFKNTDIREFIDTVGRNLNKTILVDPSVQGTVSVRTYNVLTEDEYYQFFLSVLDLYGLSVIPMDNGMVKVVRSSVARTAGAPLADSSNPGKGDEIITRVVRMENVPVRELAPLLRQLNDATGIGNVVHFEPSNVLLLTGKASVVNRLVDLVQRVDKDGVQRREIVPLRFASAKELSDMLNNLNNEEQKGQNAPQLATKVVADDETNSLVISGSEAARTRTRSLIHELDREQNNEGNTRVFYLKYASATKVVPVLTGIGEQLKDKAGAPKAKTAAASSDLNITADESTNSLVITAQPNVMNSLEKVIDKLDIRRPQVLVEAIIAEVQDGNGMDLGVQWTSKHGGVQFGSTGLPIGQVKNGTMKGLSYTGLATGFFNGDFGALMTALSTGSKNDILSTPSVVTLDNKEASFNVGQDVPVLSGSQTTSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDANATEDASLGPTFNTRTINNEVMVHSGQTVVLGGLMENVTKETVSKVPLLGDIPLVGQLFRYTSEDTSKRNLMVFIHTTVLRDDDNYSAASKEKYDQIRARQQQRMEEKKLGIVTNSNNPVMPAYRR
>NZ_CP009850.1|WP_014883170.1|3206046_3206778_-|type-II-secretion-system-protein-GspC
MFALLLFCGQQGYLTFKDYKKVTNKLANSDVQPLKKRREEKSFTLFTAAVRQDNVEIAAKAPLAAEIEGIVRSDDAWLSFAVIKTPGGARSYREGEPLTGFTDAFVQEINKDNVVVNYEGATQVLALNKPDYFKGGVDSGPVTKSTKDAGAESVHLDDYLVLKPLIEKGQLEGYNINPRNASAFFSHSGLEKGDVAVKVNSVDMTDEAKAKNIIANWSKMKEAEVVVRRHAHLENIRINVLNN
>NZ_CP009850.1|WP_038421209.1|3207078_3208644_+|peptidoglycan-binding-protein
MYQKHFNFKNPPFRKIVRSNGDFLVPYHQDVFNLLKEKTQQAGIIGLFSDDAPLLGQFSDALKSAHPDVLAINAFPKLSASSLLYKLSPGTKENKNRIQAVDAVLHQWQADKNRAKVLIVSHCEAMKESCHEVLAMLLTRAQELAFRLSVVLTGAADRDVVLMQQSELREYVHTRHTLRPLTCREYLSYVQAQCEEHGCESAPLSPARVRKMHALTKGNISKLNELSHLSMLAAWTERAAQVSPRHLRLAAGEILPAKKHGKRLATVGLFASVLFAACGWYLTSSIAGKLPVQLPVPVSWKQQAPKVEAPVVPVIDNEMVNQPDAMHQLYLMWGYDASADDALCQNAAKVNLMCKQGNASPDALAQEGYPWVSELKTGDHLNYAVVARVGDTSLDLLMNNRTWQVSRRWFNQHATGNFTQLHRLTPEGKDAISAASDTKDMGWLDQQLSLALGQPETHSQTRTAEMMKRTREFQQKMHLHVDGIPGEDTLMQLMRETHTAPSVLLQTTHATPDANTQEKHS

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Crispr_ID: NZ_CP009850_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009850_4

3630177-3630322

Orphan

Consensus_repeat	Method
GAGAGGGAACAAACACTAAAAACGGCAACCGGGTTGCCGTTTTGCTTTTACCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009850_4

>merge|NZ_CP009850|4|3630177-3630322|CRISPRCasFinder
GAGAGGGAACAAACACTAAAAACGGCAACCGGGTTGCCGTTTTGCTTTTACCTTGTGCGGTCTGATGCCCTCACCCTGGCCCTCTCCCACGGAGAGAGGGAAAAAACACTAAAAACGGCAACCGGGTTGCCGTTTTGCTTTTACCT

>NZ_CP009850|4|4|3630177-3630322|CRISPRCasFinder
GAGAGGGAACAAACACTAAAAACGGCAACCGGGTTGCCGTTTTGCTTTTACCT	TGTGCGGTCTGATGCCCTCACCCTGGCCCTCTCCCACGGA
GAGAGGGAAAAAACACTAAAAACGGCAACCGGGTTGCCGTTTTGCTTTTACCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009850.1\|WP_014882814.1\|3631683_3632646_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|234585
NZ_CP009850.1\|WP_023336830.1\|3628455_3630132_+\|Kef-family-K(+)-transporter	unknown	unknown	gnl\|CDD\|182633
NZ_CP009850.1\|WP_014882822.1\|3620572_3620983_-\|Cu(I)-responsive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182320
NZ_CP009850.1\|WP_014882808.1\|3639732_3640260_+\|primosomal-replication-protein-N''	unknown	unknown	gnl\|CDD\|182236
NZ_CP009850.1\|WP_000127359.1\|3638600_3639152_-\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NZ_CP009850.1\|WP_014882817.1\|3627020_3628223_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341031
NZ_CP009850.1\|WP_023336831.1\|3621091_3623590_+\|copper-exporting-P-type-ATPase-CopA	unknown	unknown	gnl\|CDD\|182635
NZ_CP009850.1\|WP_014882820.1\|3623640_3624435_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226258
NZ_CP009850.1\|WP_014882811.1\|3636199_3636532_-\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_CP009850.1\|WP_014882819.1\|3624634_3625114_+\|Cys-tRNA(Pro)/Cys-tRNA(Cys)-deacylase-YbaK	unknown	unknown	gnl\|CDD\|182634
NZ_CP009850.1\|WP_023336828.1\|3636586_3638512_-\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|236138
NZ_CP009850.1\|WP_014882812.1\|3635594_3636200_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP009850.1\|WP_014882824.1\|3618404_3619076_-\|iron-ABC-transporter-ATP-binding-protein-FetA	unknown	unknown	gnl\|CDD\|182331
NZ_CP009850.1\|WP_023332259.1\|3620123_3620576_+\|NfeD-family-protein	unknown	unknown	gnl\|CDD\|224501
NZ_CP009850.1\|WP_014882809.1\|3639304_3639682_-\|DUF454-family-protein	unknown	unknown	gnl\|CDD\|182520
NZ_CP009850.1\|WP_014882813.1\|3633609_3635484_-\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
NZ_CP009850.1\|WP_006809841.1\|3632770_3633415_-\|adenylate-kinase	unknown	unknown	gnl\|CDD\|234711
NZ_CP009850.1\|WP_023336826.1\|3640274_3640460_+\|pleiotropic-regulatory-protein-RsmS	unknown	unknown	gnl\|CDD\|182920
NZ_CP009850.1\|WP_008499312.1\|3619212_3620127_+\|SPFH/Band-7/PHB-domain-protein	unknown	unknown	gnl\|CDD\|223407
NZ_CP009850.1\|WP_014882818.1\|3625203_3626856_-\|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase	unknown	unknown	gnl\|CDD\|236566

Protein	Function_ID	Function_description	E-value
NZ_CP009850.1\|WP_014882814.1\|3631683_3632646_-\|ferrochelatase	gnl\|CDD\|234585	PRK00035, hemH, ferrochelatase; Reviewed.	4.48022e-165
NZ_CP009850.1\|WP_023336830.1\|3628455_3630132_+\|Kef-family-K(+)-transporter	gnl\|CDD\|182633	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional.	0
NZ_CP009850.1\|WP_014882822.1\|3620572_3620983_-\|Cu(I)-responsive-transcriptional-regulator	gnl\|CDD\|182320	PRK10227, PRK10227, HTH-type transcriptional regulator CueR.	9.09149e-94
NZ_CP009850.1\|WP_014882808.1\|3639732_3640260_+\|primosomal-replication-protein-N''	gnl\|CDD\|182236	PRK10093, PRK10093, primosomal replication protein N''; Provisional.	2.75643e-77
NZ_CP009850.1\|WP_000127359.1\|3638600_3639152_-\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	1.28318e-101
NZ_CP009850.1\|WP_014882817.1\|3627020_3628223_+\|MFS-transporter	gnl\|CDD\|341031	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters. Fosmidomycin resistance protein (FsR) confers resistance against fosmidomycin. It shows sequence similarity with the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. This FsR family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.87314e-114
NZ_CP009850.1\|WP_023336831.1\|3621091_3623590_+\|copper-exporting-P-type-ATPase-CopA	gnl\|CDD\|182635	PRK10671, copA, copper-exporting P-type ATPase CopA.	0
NZ_CP009850.1\|WP_014882820.1\|3623640_3624435_+\|hypothetical-protein	gnl\|CDD\|226258	COG3735, COG3735, Uncharacterized protein conserved in bacteria [Function unknown].	4.63912e-83
NZ_CP009850.1\|WP_014882811.1\|3636199_3636532_-\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	5.71295e-46
NZ_CP009850.1\|WP_014882819.1\|3624634_3625114_+\|Cys-tRNA(Pro)/Cys-tRNA(Cys)-deacylase-YbaK	gnl\|CDD\|182634	PRK10670, PRK10670, Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK.	3.96772e-112
NZ_CP009850.1\|WP_023336828.1\|3636586_3638512_-\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|236138	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_CP009850.1\|WP_014882812.1\|3635594_3636200_-\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	6.89924e-122
NZ_CP009850.1\|WP_014882824.1\|3618404_3619076_-\|iron-ABC-transporter-ATP-binding-protein-FetA	gnl\|CDD\|182331	PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional.	3.07099e-154
NZ_CP009850.1\|WP_023332259.1\|3620123_3620576_+\|NfeD-family-protein	gnl\|CDD\|224501	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	2.28493e-38
NZ_CP009850.1\|WP_014882809.1\|3639304_3639682_-\|DUF454-family-protein	gnl\|CDD\|182520	PRK10527, PRK10527, DUF454 family protein.	2.26495e-75
NZ_CP009850.1\|WP_014882813.1\|3633609_3635484_-\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
NZ_CP009850.1\|WP_006809841.1\|3632770_3633415_-\|adenylate-kinase	gnl\|CDD\|234711	PRK00279, adk, adenylate kinase; Reviewed.	3.0465e-135
NZ_CP009850.1\|WP_023336826.1\|3640274_3640460_+\|pleiotropic-regulatory-protein-RsmS	gnl\|CDD\|182920	PRK11038, PRK11038, hypothetical protein; Provisional.	8.92324e-20
NZ_CP009850.1\|WP_008499312.1\|3619212_3620127_+\|SPFH/Band-7/PHB-domain-protein	gnl\|CDD\|223407	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].	1.76508e-74
NZ_CP009850.1\|WP_014882818.1\|3625203_3626856_-\|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase	gnl\|CDD\|236566	PRK09558, ushA, bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed.	0

>NZ_CP009850.1|WP_023336830.1|3628455_3630132_+|Kef-family-K(+)-transporter
MHHATPLITTIVGGLVLAFILGMIANKLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIAQIGVATLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMMEKDNIGFASLALDMSITIGKVVAFIAIMMLVGRRLVPWILSRSAATGSRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILVQQPLAVLGTLAIIIFGKSLAAFFLVRMFGHSPRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFALLEKYLDKTETLEEQTLEEAIEEEKQIPVDICNHALLVGFGRVGSLLGEKLMAQGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMALAHLDCARWLLLTIPNGYEAGEIVATAREKCPNIEIIARAHYDDEVEYITERGADKVVMGEREIANTMLTLLAKPPVEEAATG
>NZ_CP009850.1|WP_014882817.1|3627020_3628223_+|MFS-transporter
MAISESTPASPPKSRTSFKVLGAISLSHLLNDMIQSLILAIYPLLQSEFSLTFVQIGMITLTFQLASSLLQPVVGYWTDKYPMPWSLPIGMCFTLSGLVLLAMAGSFEAVLIAAALVGTGSSVFHPESSRVARMASGGRHGLAQSLFQVGGNFGSSLGPLLAAVIIAPYGKGNVAWFVLAALLAIIVLAQISRWYAAQHRVNKGRPKAKVINPLPRNKVILAVSVLLVLIFSKYFYMASISSYYTFYLMQKFGLSVQNAQIHLFAFLFAVAAGTVIGGPVGDKIGRKYVIWGSILGVAPFTLILPYASLEWTGILTVIIGFILASAFSAILVYAQELLPGRIGMVSGLFFGFAFGMGGLGAAVLGMVADHTSIFLVYKICAFLPLLGMLTIFLPDNRHKA
>NZ_CP009850.1|WP_014882818.1|3625203_3626856_-|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase
MKLMKRGVALALIAAWGLVSLPAQAYEKDKTYKITILHTNDHHGHFWRSEYGEYGLSAQKTLVDGIRKEVAAQGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIGYDAMAVGNHEFDNPLTVLRQQEKWAKFPFLSANIYQKSTGERLFKPWALFKRQDLKIAVIGLTTDDTAKIGNPEFFTDIEFRKPADEAKLVIQELQQNEKPDVIIATTHMGHYDNGEHGSNAPGDVEMARSLPAGSLAMIVGGHSQDPVCMASENKKQVDYVPGTPCAPDRQNGIWIVQAHEWGKYVGRADFEFRNGEMKLVHYQLIPVNLKKKVTYPDGKSERVLYTPEIAENPQMLSLLTPFQNKGKAQLDVKIGTLNGRLEGDRSKVRFVQTNMGHLVLAAQMARTGADFGVMSGGGIRDSIEGGNITYKDVLKVQPFGNVVVYADMTGKEAIDYLTAVAQMKPDSGAYPQFANVSFVAKDGKLNDLKIKGEPVDPAKTYRLATLSFNATGGDGYPHIDNKPGYVNTGFIDAEVLKQYIEQNSPIDVNAYEPKGEVSWQ
>NZ_CP009850.1|WP_014882819.1|3624634_3625114_+|Cys-tRNA(Pro)/Cys-tRNA(Cys)-deacylase-YbaK
MTPAVKLLEKNNISFRIHTYDHDPNETNFGDEVVRKLGLNADQVYKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGAKKVDMADPMVAQRTTGYLVGGISPLGQKKRLPTLIDAPSQEFDTIYISGGKRGLDIELAAGDLAKMLDAKFADIARRD
>NZ_CP009850.1|WP_014882820.1|3623640_3624435_+|hypothetical-protein
MSLFNRIKTSFRALFPRRYAWPGLDISLPGGQHLHLVGSIHMGTQDMSPLPPGLIKRLKRADALVVEADISGQESPFAGLESDLTLAERLDEAQLAELTRVADETGVSLSMIDALPLWQIAMVLQATQAQRLGLRGDYGIDYQLLNLARARNLPIIELEGTDSQIALLRQLPDDGRMLLDDTLTHWHTNARLLQTMIGWWLDAPPADGKLALPSTFSESLYDVLMNARNNAWRETLHALPAGEYVVAVGALHLYGEGNLPSLLK
>NZ_CP009850.1|WP_023336831.1|3621091_3623590_+|copper-exporting-P-type-ATPase-CopA
MSHTIDLTLDGLSCGHCVKRVKESLEQRPDVESAEVTIDHAAVTGSASADALIDTIKQAGYGAELSHPKAKPLAESSSPSEALTAATPELPAADDIDDSQQLLINGMSCASCVSRVQNALQAVPGVAQARVNLAERTALVMGSASAAELVQAVEKAGYGAEAIEDDVERRERQQETAIATMKRFRWQAIVALLVGIPVMVWGMMGDNMMVTVDNRTLWLVIGLITLAVMVFAGGHFYTSAWKSLKNRTATMDTLVALGTGAAWLYSMSVNVWPQWFPMEARHLYYEASAMIIGLINLGHMLEARARQRSSKALERLLDLTPPTARVVTDEGEKSVPLAEVQPGMTLRLTTGDRVPVDGTITQGEAWLDEAMLTGEPIPQQKSDGDAVHAGTVVQDGSVLFTASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADRISAIFVPVVVGIALLSAAIWYFFGPAPQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTLVFDKTGTLTEGKPQVVAVNTAGIAQEDALRLAAALEQGSSHPLARAILEKANAAALPQVSNFRTLRGLGVSGEAEGHTLLLGNQALLNENGIDTAALESELKAQASQGATPVLLAVDGKAAALLAVRDPLRQDSVDALARLHRAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVLPDGKADAIKKLQSQGRQVAMVGDGINDAPALAQADVGIAMGGGSDVAIETAAITLMRHSLMGVADALAISKATLRNMKQNLLGAFIYNSFGIPIAAGILWPLTGTLLNPVVAGAAMALSSITVVSNANRLLRFKPKD
>NZ_CP009850.1|WP_014882822.1|3620572_3620983_-|Cu(I)-responsive-transcriptional-regulator
MNISDVAKKTGLTSKAIRFYEEKGLVTPPLRSENGYRSYTQRHLDELTLLRQARQVGFNLEECGELVNLFNDPKRHSADVKKRTLEKVAEIERHIIELQSMREQLLQLADSCPGDDSADCPIIDNLAGCCHRKTHA
>NZ_CP009850.1|WP_023332259.1|3620123_3620576_+|NfeD-family-protein
MIELIVAHPHAFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGLVVWLLPLDWAWQGALFAVLTLVAAWLWWRWLNRQVSEQKPLDAHLNQRGQQIVGKRFTLDTPLVNGRGHMRVGDSSWPVVADDDLSAGTRVEVIAVEGITLRVKAC
>NZ_CP009850.1|WP_008499312.1|3619212_3620127_+|SPFH/Band-7/PHB-domain-protein
MLIVVPVLIFVALVIVGAGVKIVPQGYQWTVERFGRYTNTLQPGLSLIVPFMDRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPKAAYEVSNLELAIVNLTMTNIRTVLGSMELDEMLSQRDSINTRLLHIVDEATNPWGIKVTRIEIRDVRPPAELIASMNAQMKAERTKRAYILEAEGVRQAEILKAEGEKQSQILKAEGDRQSAFLQAEARERSAEAEARATQMVSEAIAAGDIQAVNYFVAQKYTDALKEIGSANNSKVVMMPLDASSLMGSIAGIAELIKDSGNERKK
>NZ_CP009850.1|WP_014882824.1|3618404_3619076_-|iron-ABC-transporter-ATP-binding-protein-FetA
MKDNSAVLTIEDVGYRTGGTTILNNVSFSLLPGEFRLITGPSGCGKSTLLKIIASLLTPTSGKIFFEGKDISTLSPEAYRQQVSYSVQTPSLFDSTVYDNLLFPWQIRHKTPDPERFSADLARFNLPPDTLTKSVSELSGGEKQRVSLIRNLQFLPKVLLLDEITSALDDANKRNVNEIIHRYVREQNIAVLWVTHDANEITHADDVLTLQPHGGKMQEANRG
>NZ_CP009850.1|WP_014882814.1|3631683_3632646_-|ferrochelatase
MSQAKTGILLANLGTPEAPTSDAVKRYLRQFLSDTRVVDFPRLLWWPLLRGVILPIRSPRVAKLYQSVWMEEGSPLMVYSRRQEKALAARLPDMPVALGMSYGKPSLESAVESLLAQGVDHIVVLALYPQYSCSTVAAVWDELARILATRRRIPGVTFIRDYADNDLYIKALANSARASFEKHGEPDLLLLSYHGIPQRFANEGDDYPQRCRDTTRELVSALGLPPEKVMMTFQSRFGREPWLTPYTDETLKMLGEKGVKHIQVMSPGFSADCLETLEEIAVQNREFFLEAGGEKYEYIPALNDSPEHIDMMVSLVTNSR
>NZ_CP009850.1|WP_006809841.1|3632770_3633415_-|adenylate-kinase
MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAASGRVYHIKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYTKEAQAGNTKYAKVDGTKAVADVRAELEKILG
>NZ_CP009850.1|WP_014882813.1|3633609_3635484_-|molecular-chaperone-HtpG
MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYAGDGELRVRVSFNKENRTLTIADNGIGMNRDEVIDHLGTIAKSGTKAFLESMGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGDSAENGVLWESKGEGEYTVDDITKADRGTEITLHLREGEDDFLNDWRVRSIISKYSDHIALPVEIEKQEEKDGETVVSWEKINKAQALWTRNKSEIKDDEYNEFYKHIAHDFTDPLTWSHNRVEGKQEYTSLLYIPAQAPWDMWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSNDLPLNVSREILQDSTVTRNLRNALTKRALQMLEKLAKDDAEKYQTFWKQFGLVLKEGPAEDTANVETIAKLLRFASTHTDSSAQTVSLEEYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKAFQSVAKADESIDKLADEVDESAKEAEKALEPFVERVKTLLGDRVKEVRFTHRLTDTPAIVTTDADEMSTQMAKLFAAAGQAVPEVKYIFELNPDHPLVKRAADTQDEARFAEWVELLLDQSLLAERGTLEDPNLFIKRVNALLLA
>NZ_CP009850.1|WP_014882812.1|3635594_3636200_-|recombination-protein-RecR
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQDVCNICSNPRRQENGQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLESETIKEVILATNPTVEGEATANYIAELCSQYGVDASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIIF
>NZ_CP009850.1|WP_014882811.1|3636199_3636532_-|YbaB/EbfC-family-nucleoid-associated-protein
MFGGKGGLGGLMKQAQQMQEKMQKMQEEIAQMEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIDETQKEKMASVSSGMQLPPGFKMPF
>NZ_CP009850.1|WP_023336828.1|3636586_3638512_-|DNA-polymerase-III-subunit-gamma/tau
MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRAQLEHILDEEKIVHEPRALQLLARAADGSLRDALSLTDQAIASGDGKLSTEAVSTMLGTLDDDQALSLIEAMIAANGERVMTLVNAAAGRGIEWEALLVEMLSLLHRVAMLQLSPSAIGADMAAIEQRMRELARTVPPADVQLYYQTLLIGRKELPFAPDPRMGVEMTLLRALAFHPRMPLPEPEAPRQSFAPVAPTAVMSPQQVPPQPTPPPQNVPLSDATSSVLAARSQLQRAQGVTKPKKSEPAAPGRARPVNNAALERLASVTERVQSRPAPSALEQKAPAKEEAYRWKATTVVETVKEEVATPKALKKALEHEKTPELSAKLAEESIARDAWAAEVSKLQLPKLVEQVALNAWKEQDGNQVRLHLRPGQRHLNSPGAQKALAEALATLQGAPVELTIIEDDNPAVKTPLEWRQAIYEEKLAQAREAIIADNNIQTLRRFFDADLDEESIRPI
>NZ_CP009850.1|WP_000127359.1|3638600_3639152_-|adenine-phosphoribosyltransferase
MTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALAMGVGFVPVRKPRKLPRETIAESYELEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVTDAAFIINLFDLGGEQRLEKQGITSYSLVPFPGH
>NZ_CP009850.1|WP_014882809.1|3639304_3639682_-|DUF454-family-protein
MQRTILIIIGWLAVVLGTLGVVLPLLPTTPFILLAAWCFARSSPRFHHWLLYRSWFGGYLRHWQKHRAMPPGAKPRAIAVILMTFAISLWLVKMMWVRILLLIILTCLLIFMWRIPVVDEKQQKH
>NZ_CP009850.1|WP_014882808.1|3639732_3640260_+|primosomal-replication-protein-N''
MKTALLLETLQKQLTTLRAEATPLLGHATLKPRFDRQLFRTRSTVIQDYLAEAQTHLDELCHAVESEQQEQVAWLAEHLTEQITALHREIAAWPLRAWDSGSPGLGKWQRKRLENQEFERRLFEMKREREVRLNNSETLEEQQLLMREISALEGRIVRCRQALDEIERVIERLTR
>NZ_CP009850.1|WP_023336826.1|3640274_3640460_+|pleiotropic-regulatory-protein-RsmS
MSLENAPDEVKLAVDLIMLLENHDIPAETVLKALEIVQRDFEGKVKASSPHPNPLPQGEGK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009850_1	1.1\|3168698\|32\|NZ_CP009850\|CRISPRCasFinder	3168698-3168729	32	NC_016158	Escherichia phage HK639, complete genome	42284-42315	1	0.969
NZ_CP009850_1	1.1\|3168698\|32\|NZ_CP009850\|CRISPRCasFinder	3168698-3168729	32	MN856003	Bacteriophage sp. isolate 1, complete genome	29138-29169	1	0.969
NZ_CP009850_2	2.1\|3177467\|32\|NZ_CP009850\|CRISPRCasFinder,CRT	3177467-3177498	32	M11919	Bacteriophage phi-80 cI immunity region encoding the N gene	640-671	2	0.938
NZ_CP009850_2	2.1\|3177467\|32\|NZ_CP009850\|CRISPRCasFinder,CRT	3177467-3177498	32	MN856003	Bacteriophage sp. isolate 1, complete genome	37224-37255	2	0.938
NZ_CP009850_2	2.1\|3177467\|32\|NZ_CP009850\|CRISPRCasFinder,CRT	3177467-3177498	32	NC_021190	Enterobacteria phage phi80, complete genome	33169-33200	2	0.938
NZ_CP009850_2	2.1\|3177467\|32\|NZ_CP009850\|CRISPRCasFinder,CRT	3177467-3177498	32	NC_019717	Enterobacteria phage HK225, complete genome	31517-31548	2	0.938
NZ_CP009850_2	2.1\|3177467\|32\|NZ_CP009850\|CRISPRCasFinder,CRT	3177467-3177498	32	X13065	Bacteriophage phi80 early region	1107-1138	2	0.938
NZ_CP009850_1	1.1\|3168698\|32\|NZ_CP009850\|CRISPRCasFinder	3168698-3168729	32	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	46889-46920	4	0.875
NZ_CP009850_1	1.1\|3168698\|32\|NZ_CP009850\|CRISPRCasFinder	3168698-3168729	32	X92588	Bacteriophage 82 orf33, orf151, orf56, orf96, rus, orf45, and Q genes	93-124	4	0.875
NZ_CP009850_1	1.1\|3168698\|32\|NZ_CP009850\|CRISPRCasFinder	3168698-3168729	32	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	43041-43072	4	0.875
NZ_CP009850_1	1.1\|3168698\|32\|NZ_CP009850\|CRISPRCasFinder	3168698-3168729	32	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	43324-43355	4	0.875
NZ_CP009850_1	1.14\|3168695\|35\|NZ_CP009850\|CRT	3168695-3168729	35	MN856003	Bacteriophage sp. isolate 1, complete genome	29138-29172	4	0.886
NZ_CP009850_1	1.14\|3168695\|35\|NZ_CP009850\|CRT	3168695-3168729	35	NC_016158	Escherichia phage HK639, complete genome	42281-42315	4	0.886
NZ_CP009850_4	4.1\|3630230\|40\|NZ_CP009850\|CRISPRCasFinder	3630230-3630269	40	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	167180-167219	4	0.9
NZ_CP009850_4	4.1\|3630230\|40\|NZ_CP009850\|CRISPRCasFinder	3630230-3630269	40	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	9765-9804	4	0.9
NZ_CP009850_1	1.12\|3169358\|32\|NZ_CP009850\|CRISPRCasFinder	3169358-3169389	32	NZ_CP018612	Lactobacillus delbrueckii subsp. indicus strain JCM 15610 plasmid pLD01, complete sequence	11036-11067	7	0.781
NZ_CP009850_1	1.12\|3169358\|32\|NZ_CP009850\|CRISPRCasFinder	3169358-3169389	32	NZ_CP018613	Lactobacillus delbrueckii subsp. indicus strain JCM 15610 plasmid pLD02, complete sequence	10381-10412	7	0.781
NZ_CP009850_1	1.14\|3168695\|35\|NZ_CP009850\|CRT	3168695-3168729	35	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	46886-46920	7	0.8
NZ_CP009850_1	1.14\|3168695\|35\|NZ_CP009850\|CRT	3168695-3168729	35	X92588	Bacteriophage 82 orf33, orf151, orf56, orf96, rus, orf45, and Q genes	90-124	7	0.8
NZ_CP009850_1	1.14\|3168695\|35\|NZ_CP009850\|CRT	3168695-3168729	35	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	43038-43072	7	0.8
NZ_CP009850_1	1.14\|3168695\|35\|NZ_CP009850\|CRT	3168695-3168729	35	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	43321-43355	7	0.8
NZ_CP009850_2	2.3\|3177587\|32\|NZ_CP009850\|CRISPRCasFinder,CRT,PILER-CR	3177587-3177618	32	NZ_CP034813	Paracoccus sp. Arc7-R13 plasmid unnamed2, complete sequence	165109-165140	7	0.781
NZ_CP009850_3	3.2\|3193069\|32\|NZ_CP009850\|CRISPRCasFinder,CRT,PILER-CR	3193069-3193100	32	MK388859	Klebsiella phage ST405-OXA48phi1.1, complete genome	26866-26897	7	0.781
NZ_CP009850_3	3.3\|3193129\|32\|NZ_CP009850\|CRISPRCasFinder,CRT,PILER-CR	3193129-3193160	32	MH518298	Pseudomonas phage SCYZ1, complete genome	46426-46457	7	0.781
NZ_CP009850_1	1.11\|3169298\|32\|NZ_CP009850\|CRISPRCasFinder	3169298-3169329	32	NZ_CP022193	Yangia pacifica strain YSBP01 plasmid unnamed3, complete sequence	70460-70491	8	0.75
NZ_CP009850_2	2.3\|3177587\|32\|NZ_CP009850\|CRISPRCasFinder,CRT,PILER-CR	3177587-3177618	32	MT310894	Microbacterium phage Tempo, complete genome	41003-41034	8	0.75
NZ_CP009850_1	1.2\|3168758\|32\|NZ_CP009850\|CRISPRCasFinder	3168758-3168789	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2590628-2590659	9	0.719
NZ_CP009850_1	1.3\|3168818\|32\|NZ_CP009850\|CRISPRCasFinder	3168818-3168849	32	NZ_CP026333	Pseudomonas sp. XWY-1 plasmid pXWY, complete sequence	208432-208463	9	0.719
NZ_CP009850_1	1.5\|3168938\|32\|NZ_CP009850\|CRISPRCasFinder	3168938-3168969	32	MN693267	Marine virus AFVG_25M289, complete genome	35573-35604	9	0.719
NZ_CP009850_1	1.5\|3168938\|32\|NZ_CP009850\|CRISPRCasFinder	3168938-3168969	32	MN693101	Marine virus AFVG_25M559, complete genome	19033-19064	9	0.719
NZ_CP009850_1	1.5\|3168938\|32\|NZ_CP009850\|CRISPRCasFinder	3168938-3168969	32	NC_042044	Salmonella phage Melville, complete genome	29919-29950	9	0.719
NZ_CP009850_1	1.5\|3168938\|32\|NZ_CP009850\|CRISPRCasFinder	3168938-3168969	32	NZ_CP038171	Enterococcus faecium strain SDGJP3 plasmid pSDGJP3, complete sequence	47970-48001	9	0.719
NZ_CP009850_1	1.5\|3168938\|32\|NZ_CP009850\|CRISPRCasFinder	3168938-3168969	32	NZ_CP038176	Enterococcus faecium strain HN11 plasmid pHN11, complete sequence	24221-24252	9	0.719
NZ_CP009850_1	1.5\|3168938\|32\|NZ_CP009850\|CRISPRCasFinder	3168938-3168969	32	NZ_MH784601	Enterococcus faecium strain 25 plasmid pC25-1, complete sequence	6885-6916	9	0.719
NZ_CP009850_1	1.5\|3168938\|32\|NZ_CP009850\|CRISPRCasFinder	3168938-3168969	32	NZ_MH784602	Enterococcus faecium strain 27 plasmid pC27-2, complete sequence	6885-6916	9	0.719
NZ_CP009850_1	1.11\|3169298\|32\|NZ_CP009850\|CRISPRCasFinder	3169298-3169329	32	MH019216	Streptomyces phage Wentworth, complete genome	31307-31338	9	0.719
NZ_CP009850_1	1.13\|3169418\|32\|NZ_CP009850\|CRISPRCasFinder	3169418-3169449	32	NZ_CP041094	Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH01 plasmid unnamed2, complete sequence	90257-90288	9	0.719
NZ_CP009850_2	2.3\|3177587\|32\|NZ_CP009850\|CRISPRCasFinder,CRT,PILER-CR	3177587-3177618	32	NZ_CP045329	Labrenzia sp. THAF191b plasmid pTHAF191b_a, complete sequence	198017-198048	9	0.719
NZ_CP009850_2	2.3\|3177587\|32\|NZ_CP009850\|CRISPRCasFinder,CRT,PILER-CR	3177587-3177618	32	NZ_CP045345	Labrenzia sp. THAF187b plasmid pTHAF187b_a, complete sequence	207573-207604	9	0.719
NZ_CP009850_2	2.3\|3177587\|32\|NZ_CP009850\|CRISPRCasFinder,CRT,PILER-CR	3177587-3177618	32	NZ_CP045335	Labrenzia sp. THAF191a plasmid pTHAF191a_b, complete sequence	489781-489812	9	0.719
NZ_CP009850_2	2.8\|3177889\|32\|NZ_CP009850\|CRISPRCasFinder,CRT,PILER-CR	3177889-3177920	32	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	259220-259251	9	0.719
NZ_CP009850_4	4.1\|3630230\|40\|NZ_CP009850\|CRISPRCasFinder	3630230-3630269	40	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	422250-422289	9	0.775
NZ_CP009850_1	1.1\|3168698\|32\|NZ_CP009850\|CRISPRCasFinder	3168698-3168729	32	NZ_CP015063	Mesorhizobium ciceri strain CC1192 plasmid pMc1192, complete sequence	441459-441490	10	0.688
NZ_CP009850_1	1.5\|3168938\|32\|NZ_CP009850\|CRISPRCasFinder	3168938-3168969	32	MN698247	Pelagibacter phage HTVC115P, complete genome	32036-32067	10	0.688
NZ_CP009850_1	1.5\|3168938\|32\|NZ_CP009850\|CRISPRCasFinder	3168938-3168969	32	AP013455	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S38-C40	4502-4533	11	0.656

1. spacer 1.1|3168698|32|NZ_CP009850|CRISPRCasFinder matches to NC_016158 (Escherichia phage HK639, complete genome) position: , mismatch: 1, identity: 0.969

ctgaacaacttcggtgacttctgcgcatttaa	CRISPR spacer
ctgaacaactccggtgacttctgcgcatttaa	Protospacer
**********.*********************

2. spacer 1.1|3168698|32|NZ_CP009850|CRISPRCasFinder matches to MN856003 (Bacteriophage sp. isolate 1, complete genome) position: , mismatch: 1, identity: 0.969

ctgaacaacttcggtgacttctgcgcatttaa	CRISPR spacer
ctgaacaactccggtgacttctgcgcatttaa	Protospacer
**********.*********************

3. spacer 2.1|3177467|32|NZ_CP009850|CRISPRCasFinder,CRT matches to M11919 (Bacteriophage phi-80 cI immunity region encoding the N gene) position: , mismatch: 2, identity: 0.938

acttcgctcagttgtcgatgtttcctttcgat	CRISPR spacer
acttcgctcagctgtcgatgtttcgtttcgat	Protospacer
***********.************ *******

4. spacer 2.1|3177467|32|NZ_CP009850|CRISPRCasFinder,CRT matches to MN856003 (Bacteriophage sp. isolate 1, complete genome) position: , mismatch: 2, identity: 0.938

acttcgctcagttgtcgatgtttcctttcgat	CRISPR spacer
acttcgctcagctgtcgatgtttcgtttcgat	Protospacer
***********.************ *******

5. spacer 2.1|3177467|32|NZ_CP009850|CRISPRCasFinder,CRT matches to NC_021190 (Enterobacteria phage phi80, complete genome) position: , mismatch: 2, identity: 0.938

acttcgctcagttgtcgatgtttcctttcgat	CRISPR spacer
acttcgctcagctgtcgatgtttcgtttcgat	Protospacer
***********.************ *******

6. spacer 2.1|3177467|32|NZ_CP009850|CRISPRCasFinder,CRT matches to NC_019717 (Enterobacteria phage HK225, complete genome) position: , mismatch: 2, identity: 0.938

acttcgctcagttgtcgatgtttcctttcgat	CRISPR spacer
acttcgctcagctgtcgatgtttcgtttcgat	Protospacer
***********.************ *******

7. spacer 2.1|3177467|32|NZ_CP009850|CRISPRCasFinder,CRT matches to X13065 (Bacteriophage phi80 early region) position: , mismatch: 2, identity: 0.938

acttcgctcagttgtcgatgtttcctttcgat	CRISPR spacer
acttcgctcagctgtcgatgtttcgtttcgat	Protospacer
***********.************ *******

8. spacer 1.1|3168698|32|NZ_CP009850|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 4, identity: 0.875

ctgaacaacttcggtgacttctgcgcatttaa---	CRISPR spacer
ctgaacaactccggtgacttctgcgc---taaacg	Protospacer
**********.***************   ***

9. spacer 1.1|3168698|32|NZ_CP009850|CRISPRCasFinder matches to X92588 (Bacteriophage 82 orf33, orf151, orf56, orf96, rus, orf45, and Q genes) position: , mismatch: 4, identity: 0.875

ctgaacaacttcggtgacttctgcgcatttaa---	CRISPR spacer
ctgaacaactccggtgacttctgcgc---taaacg	Protospacer
**********.***************   ***

10. spacer 1.1|3168698|32|NZ_CP009850|CRISPRCasFinder matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 4, identity: 0.875

ctgaacaacttcggtgacttctgcgcatttaa---	CRISPR spacer
ctgaacaactccggtgacttctgcgc---taaacg	Protospacer
**********.***************   ***

11. spacer 1.1|3168698|32|NZ_CP009850|CRISPRCasFinder matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 4, identity: 0.875

ctgaacaacttcggtgacttctgcgcatttaa---	CRISPR spacer
ctgaacaactccggtgacttctgcgc---taaacg	Protospacer
**********.***************   ***

12. spacer 1.14|3168695|35|NZ_CP009850|CRT matches to MN856003 (Bacteriophage sp. isolate 1, complete genome) position: , mismatch: 4, identity: 0.886

gagctgaacaacttcggtgacttctgcgcatttaa	CRISPR spacer
agcctgaacaactccggtgacttctgcgcatttaa	Protospacer
.. **********.*********************

13. spacer 1.14|3168695|35|NZ_CP009850|CRT matches to NC_016158 (Escherichia phage HK639, complete genome) position: , mismatch: 4, identity: 0.886

gagctgaacaacttcggtgacttctgcgcatttaa	CRISPR spacer
agcctgaacaactccggtgacttctgcgcatttaa	Protospacer
.. **********.*********************

14. spacer 4.1|3630230|40|NZ_CP009850|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 4, identity: 0.9

tgtgcggtctgatgccctcaccctggccctctcccacgga	CRISPR spacer
ggtgcggtctgatgccctcaccccgaccctctcccacggg	Protospacer
 **********************.*.*************.

15. spacer 4.1|3630230|40|NZ_CP009850|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 4, identity: 0.9

tgtgcggtctgatgccctcaccctggccctctcccacgga	CRISPR spacer
cgtgcggtctgatgccctcaccccggccctctcccacagg	Protospacer
.**********************.*************.*.

16. spacer 1.12|3169358|32|NZ_CP009850|CRISPRCasFinder matches to NZ_CP018612 (Lactobacillus delbrueckii subsp. indicus strain JCM 15610 plasmid pLD01, complete sequence) position: , mismatch: 7, identity: 0.781

ccagaaa---acgactggttttaagccatctggac	CRISPR spacer
---gacaccttcgagtgcttttaagccatctggac	Protospacer
   ** *    *** ** *****************

17. spacer 1.12|3169358|32|NZ_CP009850|CRISPRCasFinder matches to NZ_CP018613 (Lactobacillus delbrueckii subsp. indicus strain JCM 15610 plasmid pLD02, complete sequence) position: , mismatch: 7, identity: 0.781

ccagaaa---acgactggttttaagccatctggac	CRISPR spacer
---gacaccttcgagtgcttttaagccatctggac	Protospacer
   ** *    *** ** *****************

18. spacer 1.14|3168695|35|NZ_CP009850|CRT matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 7, identity: 0.8

gagctgaacaacttcggtgacttctgcgcatttaa---	CRISPR spacer
agcctgaacaactccggtgacttctgcgc---taaacg	Protospacer
.. **********.***************   ***

19. spacer 1.14|3168695|35|NZ_CP009850|CRT matches to X92588 (Bacteriophage 82 orf33, orf151, orf56, orf96, rus, orf45, and Q genes) position: , mismatch: 7, identity: 0.8

gagctgaacaacttcggtgacttctgcgcatttaa---	CRISPR spacer
agcctgaacaactccggtgacttctgcgc---taaacg	Protospacer
.. **********.***************   ***

20. spacer 1.14|3168695|35|NZ_CP009850|CRT matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.8

gagctgaacaacttcggtgacttctgcgcatttaa---	CRISPR spacer
agcctgaacaactccggtgacttctgcgc---taaacg	Protospacer
.. **********.***************   ***

21. spacer 1.14|3168695|35|NZ_CP009850|CRT matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.8

gagctgaacaacttcggtgacttctgcgcatttaa---	CRISPR spacer
agcctgaacaactccggtgacttctgcgc---taaacg	Protospacer
.. **********.***************   ***

22. spacer 2.3|3177587|32|NZ_CP009850|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034813 (Paracoccus sp. Arc7-R13 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

--ccagctctgccagtacatctgggacgagttct	CRISPR spacer
cgtcag--cggccagtccatctgggacgaggtca	Protospacer
  .***  * ****** ************* **

23. spacer 3.2|3193069|32|NZ_CP009850|CRISPRCasFinder,CRT,PILER-CR matches to MK388859 (Klebsiella phage ST405-OXA48phi1.1, complete genome) position: , mismatch: 7, identity: 0.781

ccggcccgggcgagcttatccatccgtggttc	CRISPR spacer
gcggctcgggcgagcttattcatcctgtgttt	Protospacer
 ****.*************.*****   ***.

24. spacer 3.3|3193129|32|NZ_CP009850|CRISPRCasFinder,CRT,PILER-CR matches to MH518298 (Pseudomonas phage SCYZ1, complete genome) position: , mismatch: 7, identity: 0.781

atagactgccgccttgctcattctcgcgagtg	CRISPR spacer
agcgaatgccgcctttctcattctcgtcattg	Protospacer
*  ** ********* **********. * **

25. spacer 1.11|3169298|32|NZ_CP009850|CRISPRCasFinder matches to NZ_CP022193 (Yangia pacifica strain YSBP01 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

ccgcgatggacttgagcgcgcagagctgcgtt	CRISPR spacer
gcccgctggatttgagcgcgcagagcaaggtg	Protospacer
 * ** ****.*************** . **

26. spacer 2.3|3177587|32|NZ_CP009850|CRISPRCasFinder,CRT,PILER-CR matches to MT310894 (Microbacterium phage Tempo, complete genome) position: , mismatch: 8, identity: 0.75

ccagctctgccagtacatctgggacgagttct	CRISPR spacer
gccgacgcgccagtacatcttggccgagttct	Protospacer
 * * . .************ ** ********

27. spacer 1.2|3168758|32|NZ_CP009850|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.719

taccggctggtgacgagctgacccgggatgat	CRISPR spacer
aggtggtcggtgacgcgctgacccgggacgag	Protospacer
 . .**..******* ************.**

28. spacer 1.3|3168818|32|NZ_CP009850|CRISPRCasFinder matches to NZ_CP026333 (Pseudomonas sp. XWY-1 plasmid pXWY, complete sequence) position: , mismatch: 9, identity: 0.719

ttccatgctgttcgtaatatcggtgcggcggc	CRISPR spacer
tcggatactgtccgtaatatcggtgcgtgtga	Protospacer
*.  **.****.***************   *

29. spacer 1.5|3168938|32|NZ_CP009850|CRISPRCasFinder matches to MN693267 (Marine virus AFVG_25M289, complete genome) position: , mismatch: 9, identity: 0.719

agttgaatttatctatatcagctaatcgccag	CRISPR spacer
cctttaatttatctatgtcagctaatgctttg	Protospacer
  ** ***********.*********  .. *

30. spacer 1.5|3168938|32|NZ_CP009850|CRISPRCasFinder matches to MN693101 (Marine virus AFVG_25M559, complete genome) position: , mismatch: 9, identity: 0.719

agttgaatttatctatatcagctaatcgccag	CRISPR spacer
cttttaatttatctatgtcagctaatgctttg	Protospacer
  ** ***********.*********  .. *

31. spacer 1.5|3168938|32|NZ_CP009850|CRISPRCasFinder matches to NC_042044 (Salmonella phage Melville, complete genome) position: , mismatch: 9, identity: 0.719

agttgaatttatctatatcagctaatcgccag	CRISPR spacer
tattcaatttatctatttcagctaatgtagaa	Protospacer
 .** *********** *********    *.

32. spacer 1.5|3168938|32|NZ_CP009850|CRISPRCasFinder matches to NZ_CP038171 (Enterococcus faecium strain SDGJP3 plasmid pSDGJP3, complete sequence) position: , mismatch: 9, identity: 0.719

agttgaatttatctatatcagctaatcgccag	CRISPR spacer
tatgtaatttatttaaatcagctaatcgaaaa	Protospacer
 .*  *******.** ************  *.

33. spacer 1.5|3168938|32|NZ_CP009850|CRISPRCasFinder matches to NZ_CP038176 (Enterococcus faecium strain HN11 plasmid pHN11, complete sequence) position: , mismatch: 9, identity: 0.719

agttgaatttatctatatcagctaatcgccag	CRISPR spacer
tatgtaatttatttaaatcagctaatcgaaaa	Protospacer
 .*  *******.** ************  *.

34. spacer 1.5|3168938|32|NZ_CP009850|CRISPRCasFinder matches to NZ_MH784601 (Enterococcus faecium strain 25 plasmid pC25-1, complete sequence) position: , mismatch: 9, identity: 0.719

agttgaatttatctatatcagctaatcgccag	CRISPR spacer
tatgtaatttatttaaatcagctaatcgaaaa	Protospacer
 .*  *******.** ************  *.

35. spacer 1.5|3168938|32|NZ_CP009850|CRISPRCasFinder matches to NZ_MH784602 (Enterococcus faecium strain 27 plasmid pC27-2, complete sequence) position: , mismatch: 9, identity: 0.719

agttgaatttatctatatcagctaatcgccag	CRISPR spacer
tatgtaatttatttaaatcagctaatcgaaaa	Protospacer
 .*  *******.** ************  *.

36. spacer 1.11|3169298|32|NZ_CP009850|CRISPRCasFinder matches to MH019216 (Streptomyces phage Wentworth, complete genome) position: , mismatch: 9, identity: 0.719

ccgcgatggacttgagcgcgcagagctgcgtt	CRISPR spacer
ccgcgatggccttgagctcgcaggccaagtgt	Protospacer
********* ******* *****. * .   *

37. spacer 1.13|3169418|32|NZ_CP009850|CRISPRCasFinder matches to NZ_CP041094 (Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH01 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tggccgactttgtttgtattggcaaacattgt	CRISPR spacer
tggccgacttttttggtattggctttaatgag	Protospacer
*********** ** ********    ** .

38. spacer 2.3|3177587|32|NZ_CP009850|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045329 (Labrenzia sp. THAF191b plasmid pTHAF191b_a, complete sequence) position: , mismatch: 9, identity: 0.719

ccagctctgccagtacatctgggacgagttct	CRISPR spacer
ccagctcagccagtacatcggggggtgtcgct	Protospacer
******* *********** ***.  . . **

39. spacer 2.3|3177587|32|NZ_CP009850|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045345 (Labrenzia sp. THAF187b plasmid pTHAF187b_a, complete sequence) position: , mismatch: 9, identity: 0.719

ccagctctgccagtacatctgggacgagttct	CRISPR spacer
ccagctcagccagtacatcggggggtgtcgct	Protospacer
******* *********** ***.  . . **

40. spacer 2.3|3177587|32|NZ_CP009850|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045335 (Labrenzia sp. THAF191a plasmid pTHAF191a_b, complete sequence) position: , mismatch: 9, identity: 0.719

ccagctctgccagtacatctgggacgagttct	CRISPR spacer
ccagctcagccagtacatcggggggtgtcgct	Protospacer
******* *********** ***.  . . **

41. spacer 2.8|3177889|32|NZ_CP009850|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

tttgagcgtagcggaggcggcgcagcatatag	CRISPR spacer
ctccagcgtggcggcggcggcgcagcagacga	Protospacer
.*. *****.**** ************ *...

42. spacer 4.1|3630230|40|NZ_CP009850|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 9, identity: 0.775

tgtgcggtctgatgccctcaccctggccctctcccacgga	CRISPR spacer
gctaatgcctgatgccctcaccccggccctctcccacagg	Protospacer
  *.  *.***************.*************.*.

43. spacer 1.1|3168698|32|NZ_CP009850|CRISPRCasFinder matches to NZ_CP015063 (Mesorhizobium ciceri strain CC1192 plasmid pMc1192, complete sequence) position: , mismatch: 10, identity: 0.688

ctgaacaacttcggtgacttctgcgcatttaa	CRISPR spacer
cgatccaactacgctgacttctgcgcatggtg	Protospacer
* .  ***** ** **************   .

44. spacer 1.5|3168938|32|NZ_CP009850|CRISPRCasFinder matches to MN698247 (Pelagibacter phage HTVC115P, complete genome) position: , mismatch: 10, identity: 0.688

agttgaatttatctatatcagctaatcgccag	CRISPR spacer
ctttcaatttttctatatcagctaatgcttta	Protospacer
  ** ***** ***************  .. .

45. spacer 1.5|3168938|32|NZ_CP009850|CRISPRCasFinder matches to AP013455 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S38-C40) position: , mismatch: 11, identity: 0.656

agttgaatttatctatatcagctaatcgccag	CRISPR spacer
cttttaatttttctatatcagctaaagcttta	Protospacer
  ** ***** **************   .. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1160120 : 1231038

Salmonella_phage(31.91%)

plate,head,portal,holin,lysis,tail,tRNA,capsid,integrase,terminase

attL 1154789:1154804|attR 1211754:1211769

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1154789:1154804	attL	NA	NA	NA	NA
WP_038421043.1\|1160120_1161329_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	1.1e-107	50.8
WP_008502505.1\|1161966_1162449_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
WP_023337653.1\|1162566_1163043_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_014884884.1\|1163032_1163320_+	RnfH family protein	NA	NA	NA	NA
WP_014884883.1\|1163424_1163763_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_071819763.1\|1163744_1163927_-	hypothetical protein	NA	NA	NA	NA
WP_014884882.1\|1163901_1165563_-	DNA repair protein RecN	NA	NA	NA	NA
WP_008502500.1\|1165648_1166527_-	NAD(+) kinase	NA	NA	NA	NA
WP_014884881.1\|1166649_1167243_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_032629440.1\|1167294_1168581_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_014884879.1\|1168599_1169391_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_014884878.1\|1169557_1170919_+	signal recognition particle protein	NA	NA	NA	NA
WP_003863133.1\|1171035_1171284_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_003863136.1\|1171299_1171839_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_014884877.1\|1171870_1172638_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_002914145.1\|1172681_1173029_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_071847085.1\|1173173_1173392_-	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	8.0e-30	79.2
WP_038421044.1\|1173469_1174633_-	phage late control D family protein	A0A218M4J7	Erwinia_phage	8.7e-163	77.0
WP_038421045.1\|1174629_1175094_-\|tail	phage tail protein	A0A218M4I2	Erwinia_phage	3.2e-60	72.1
WP_038421046.1\|1175106_1177554_-\|tail	phage tail tape measure protein	Q7Y4C8	Escherichia_virus	9.0e-303	75.5
WP_000763321.1\|1177543_1177666_-\|tail	GpE family phage tail protein	O80316	Escherichia_phage	5.0e-13	89.7
WP_038421047.1\|1177698_1178007_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.4e-27	73.6
WP_001207673.1\|1178067_1178586_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	1.0e-78	82.0
WP_038421048.1\|1178598_1179792_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	6.1e-188	82.1
WP_032665574.1\|1179914_1180319_-\|tail	tail fiber assembly protein	U5P083	Shigella_phage	5.3e-27	47.0
WP_038421049.1\|1180330_1182361_-\|tail	tail fiber protein	U5N099	Enterobacteria_phage	5.3e-91	80.5
WP_023333111.1\|1182372_1182903_-\|tail	phage tail protein I	Q37841	Escherichia_phage	1.2e-90	86.9
WP_038421050.1\|1182895_1183804_-\|plate	baseplate assembly protein	S4TNY7	Salmonella_phage	7.0e-136	82.8
WP_038421051.1\|1183809_1184160_-\|plate	baseplate assembly protein	A0A0M4RE59	Salmonella_phage	1.5e-38	70.7
WP_038421052.1\|1184156_1184798_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	8.6e-96	82.2
WP_023338713.1\|1184866_1185316_-	phage virion morphogenesis protein	A0A0M3UL83	Salmonella_phage	2.0e-51	70.1
WP_023338712.1\|1185308_1185776_-\|tail	phage tail protein	A0A218M4K6	Erwinia_phage	7.7e-62	72.9
WP_080297781.1\|1185738_1185984_-\|holin	holin	S4TNY4	Salmonella_phage	1.0e-28	76.5
WP_038421053.1\|1185871_1186297_-\|lysis	LysB family phage lysis regulatory protein	A0A218M4K2	Erwinia_phage	3.5e-45	69.9
WP_038421054.1\|1186293_1186803_-	lysozyme	A0A218M4K3	Erwinia_phage	2.8e-81	87.5
WP_038421055.1\|1186786_1187008_-	hypothetical protein	A0A218M4L5	Erwinia_phage	5.5e-26	74.0
WP_023209074.1\|1186998_1187202_-\|tail	phage tail X family protein	A0A218M4L8	Erwinia_phage	1.1e-25	80.6
WP_038421056.1\|1187201_1187708_-\|head	head completion/stabilization protein	O80306	Escherichia_phage	1.3e-62	70.8
WP_038421057.1\|1187807_1188563_-\|terminase	terminase endonuclease subunit	Q6K1I5	Salmonella_virus	2.3e-79	68.1
WP_038421058.1\|1188566_1189634_-\|capsid	phage major capsid protein, P2 family	S4TUA6	Salmonella_phage	2.3e-170	83.3
WP_038421059.1\|1189689_1190544_-\|capsid	GPO family capsid scaffolding protein	A0A218M4L9	Erwinia_phage	4.9e-107	69.4
WP_038421060.1\|1190711_1192481_+\|terminase	terminase ATPase subunit family protein	A0A218M4M1	Erwinia_phage	5.5e-302	85.4
WP_038421061.1\|1192482_1193508_+\|portal	phage portal protein	Q6K1J0	Salmonella_virus	4.6e-168	82.9
WP_038421062.1\|1193820_1194078_-	hypothetical protein	A0A1V0E5L9	Salmonella_phage	6.0e-16	51.3
WP_023278476.1\|1194165_1194399_-	DinI family protein	A0A0M4S6H1	Salmonella_phage	3.1e-35	97.4
WP_023209082.1\|1194402_1194585_-	hypothetical protein	A0A0M5M1G5	Salmonella_phage	2.6e-26	96.7
WP_038421336.1\|1194698_1196930_-	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	93.5
WP_038421063.1\|1196922_1197279_-	hypothetical protein	NA	NA	NA	NA
WP_038421064.1\|1197275_1197500_-	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	2.0e-31	91.9
WP_038421065.1\|1197499_1197727_-	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	3.2e-29	93.3
WP_038421066.1\|1197794_1198133_-	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	8.9e-52	92.0
WP_023338694.1\|1198096_1198297_-	DUF2724 domain-containing protein	Q6K1F7	Salmonella_virus	4.3e-30	90.9
WP_038421067.1\|1198304_1198814_-	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	7.5e-87	95.9
WP_038421068.1\|1198846_1199218_-	hypothetical protein	A0A0M4R4X7	Salmonella_phage	1.2e-60	97.6
WP_038421069.1\|1199338_1200175_+	phage repressor protein CI	A0A0M4RE65	Salmonella_phage	7.7e-121	77.7
WP_038421070.1\|1200183_1200522_+	DUF2511 domain-containing protein	A0A0M3ULF8	Salmonella_phage	6.2e-53	86.6
WP_038421071.1\|1200544_1201594_+\|integrase	site-specific integrase	A0A0M4S6G4	Salmonella_phage	2.3e-186	88.3
WP_023337651.1\|1201822_1202227_+	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_023337650.1\|1202265_1203636_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_014884874.1\|1203638_1204124_-	OmpA family protein	NA	NA	NA	NA
WP_014884873.1\|1204136_1205357_-	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	1.9e-06	39.8
WP_023337647.1\|1205349_1205946_-	YfiR family protein	NA	NA	NA	NA
WP_014884871.1\|1206039_1206414_-	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_014884870.1\|1206629_1207700_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	9.0e-90	51.5
WP_023337646.1\|1207710_1208832_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_014884868.1\|1208892_1209765_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_014884867.1\|1209761_1210922_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_100249759.1\|1211029_1211077_-	hypothetical protein	NA	NA	NA	NA
WP_014884866.1\|1211181_1211523_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_014884865.1\|1211790_1212528_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
1211754:1211769	attR	NA	NA	NA	NA
WP_014884864.1\|1212659_1213640_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_023337645.1\|1213636_1214368_+	polyphenol oxidase	NA	NA	NA	NA
WP_014884862.1\|1214498_1217072_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	5.3e-128	35.2
WP_023331104.1\|1222689_1223985_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.8e-44	30.4
WP_014884860.1\|1223981_1224305_-	YfiM family lipoprotein	NA	NA	NA	NA
WP_023331103.1\|1224350_1225706_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_038421072.1\|1225816_1228480_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_023337643.1\|1228515_1229214_-	DTW domain-containing protein	NA	NA	NA	NA
WP_014884856.1\|1229283_1229703_-	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	7.7e-13	40.2
WP_014884855.1\|1229907_1231038_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_2

1702029 : 1709457

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014884480.1\|1702029_1703094_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.1e-100	53.8
WP_014884479.1\|1703109_1703976_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	4.1e-109	66.7
WP_014884478.1\|1703982_1704879_+	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_014884477.1\|1704889_1705438_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.1e-54	54.4
WP_014884476.1\|1705573_1706980_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	4.0e-37	28.3
WP_014884475.1\|1707234_1708401_+	UDP-glucose 6-dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	2.0e-111	53.0
WP_014884474.1\|1708452_1709457_-	NAD-dependent epimerase	A0A2K9L4U8	Tupanvirus	1.7e-34	30.4

DBSCAN-SWA_3

2145816 : 2205552

Escherichia_phage(22.5%)

plate,portal,head,holin,protease,lysis,tail,capsid,integrase,terminase

attL 2143473:2143491|attR 2162288:2162306

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2143473:2143491	attL	NA	NA	NA	NA
WP_014884156.1\|2145816_2146827_-\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	1.2e-147	76.1
WP_014884155.1\|2146923_2147223_-	helix-turn-helix transcriptional regulator	Q1JS61	Enterobacteria_phage	2.9e-38	74.7
WP_014884154.1\|2147347_2147623_+	hypothetical protein	Q1JS60	Enterobacteria_phage	6.8e-42	85.6
WP_014884153.1\|2147789_2148290_+	hypothetical protein	M1SV55	Escherichia_phage	7.4e-71	75.9
WP_014884152.1\|2148356_2148575_+	DUF2732 family protein	S4TP68	Salmonella_phage	3.8e-11	62.1
WP_014884151.1\|2148597_2148861_+	hypothetical protein	U5N3W1	Enterobacteria_phage	2.0e-22	57.0
WP_032609413.1\|2148862_2151160_+	replication endonuclease	Q858T4	Yersinia_virus	0.0e+00	75.5
WP_032609411.1\|2151156_2151441_+	hypothetical protein	NA	NA	NA	NA
WP_032609409.1\|2151588_2152143_+	hypothetical protein	NA	NA	NA	NA
WP_032609407.1\|2152824_2153343_-	hypothetical protein	NA	NA	NA	NA
WP_032609405.1\|2153345_2154545_-	ATP-binding protein	A0A0P0IKU8	Acinetobacter_phage	3.4e-53	32.6
WP_038421119.1\|2154872_2155898_-\|portal	phage portal protein	Q6K1J0	Salmonella_virus	9.3e-169	83.2
WP_032609402.1\|2155899_2157669_-\|terminase	terminase ATPase subunit family protein	A0A218M4M1	Erwinia_phage	1.1e-302	85.7
WP_032609401.1\|2157835_2158690_+\|capsid	GPO family capsid scaffolding protein	S4TP53	Salmonella_phage	1.0e-112	72.2
WP_032609400.1\|2158745_2159813_+\|capsid	phage major capsid protein, P2 family	S4TUA6	Salmonella_phage	3.9e-170	83.3
WP_038421123.1\|2159816_2160572_+\|terminase	terminase endonuclease subunit	Q6K1I5	Salmonella_virus	7.5e-75	65.3
WP_032609395.1\|2160671_2161178_+\|head	head completion/stabilization protein	O80306	Escherichia_phage	7.1e-61	70.2
WP_032609394.1\|2161177_2161381_+\|tail	tail protein X	A0A218M4L8	Erwinia_phage	6.1e-24	76.1
WP_032609392.1\|2161371_2161593_+	hypothetical protein	A0A218M4L5	Erwinia_phage	7.1e-26	74.0
WP_032609391.1\|2161576_2162086_+	lysozyme	A0A218M4K3	Erwinia_phage	1.7e-78	86.9
WP_038421124.1\|2162082_2162508_+\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	9.2e-46	70.1
2162288:2162306	attR	NA	NA	NA	NA
WP_072163335.1\|2162395_2162641_+\|holin	holin	S4TNY4	Salmonella_phage	1.0e-28	77.8
WP_032609387.1\|2162603_2163071_+\|tail	phage tail protein	A0A218M4K6	Erwinia_phage	6.5e-61	71.6
WP_032609386.1\|2163063_2163513_+	phage virion morphogenesis protein	O80313	Escherichia_phage	2.6e-51	73.5
WP_032609384.1\|2163582_2164314_-	hypothetical protein	NA	NA	NA	NA
WP_032609382.1\|2164445_2165087_+\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	1.6e-97	83.1
WP_023338715.1\|2165083_2165434_+	hypothetical protein	A0A0M4RE59	Salmonella_phage	1.5e-38	69.8
WP_032609381.1\|2165439_2166348_+\|plate	baseplate assembly protein	Q6K1H4	Salmonella_virus	3.2e-136	83.1
WP_032609378.1\|2166340_2166871_+\|tail	phage tail protein I	Q37841	Escherichia_phage	1.5e-90	86.4
WP_038421125.1\|2168726_2169242_+\|tail	tail fiber assembly protein	F1BUK2	Cronobacter_phage	4.9e-17	36.3
WP_032609374.1\|2169616_2170810_+\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	8.3e-185	81.1
WP_038421126.1\|2170822_2171341_+\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	9.4e-77	79.1
WP_032609371.1\|2171397_2171700_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.4e-27	73.6
WP_032609370.1\|2171732_2171855_+\|tail	GpE family phage tail protein	O80316	Escherichia_phage	1.0e-13	92.3
WP_038421127.1\|2171844_2174292_+\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	2.5e-284	72.4
WP_032609367.1\|2174304_2174769_+\|tail	phage tail protein	A0A218M4I2	Erwinia_phage	4.2e-60	72.1
WP_032609366.1\|2174765_2175935_+	phage late control D family protein	A0A218M4J7	Erwinia_phage	4.0e-160	76.9
WP_032609365.1\|2176011_2176233_+	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	6.0e-25	69.9
WP_032609364.1\|2176349_2177240_+	hypothetical protein	NA	NA	NA	NA
WP_032609363.1\|2177296_2177773_+	hypothetical protein	NA	NA	NA	NA
WP_023330569.1\|2177918_2178215_-	YciI family protein	NA	NA	NA	NA
WP_014884119.1\|2178437_2179166_+	TonB system transport protein TonB	NA	NA	NA	NA
WP_008502796.1\|2179202_2179598_-	acyl-CoA thioester hydrolase YciA	NA	NA	NA	NA
WP_014884118.1\|2179702_2180242_-	septation protein A	NA	NA	NA	NA
WP_014884117.1\|2180299_2181043_-	UPF0259 family protein	NA	NA	NA	NA
WP_014884116.1\|2181068_2181473_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_014884115.1\|2181754_2182387_+	outer membrane protein OmpW	NA	NA	NA	NA
WP_014884114.1\|2182433_2182772_-	hypothetical protein	NA	NA	NA	NA
WP_014884113.1\|2182897_2183131_-	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA
WP_023337389.1\|2183127_2184339_-	selenium metabolism membrane protein YedE/FdhT	NA	NA	NA	NA
WP_023337388.1\|2184516_2185065_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_038421128.1\|2185302_2186082_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_023337386.1\|2186181_2187201_+	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_014884109.1\|2187457_2188225_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_014884108.1\|2188301_2189123_-	alpha/beta hydrolase	A0A1D8EW21	Mycobacterium_phage	3.7e-11	25.3
WP_014884107.1\|2189263_2189743_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_014884106.1\|2189872_2190532_+	DsbA family protein	NA	NA	NA	NA
WP_032629007.1\|2190595_2191201_-	hypothetical protein	NA	NA	NA	NA
WP_014884103.1\|2191692_2191905_+	RNA chaperone/antiterminator CspA	A0A1W6JNX5	Morganella_phage	8.4e-24	80.6
WP_014884102.1\|2192060_2193317_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_014884101.1\|2193583_2194393_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_014884100.1\|2194392_2195586_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_023337383.1\|2195596_2196955_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	5.6e-36	40.2
WP_023330556.1\|2196958_2198554_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	1.9e-51	37.3
WP_023330555.1\|2198553_2200116_-	anthranilate synthase component 1	NA	NA	NA	NA
WP_106993556.1\|2200212_2200257_-	trp operon leader peptide	NA	NA	NA	NA
WP_032645259.1\|2200396_2201278_+	5'-3' exoribonuclease	NA	NA	NA	NA
WP_003856793.1\|2201274_2201895_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_014884095.1\|2201991_2202870_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_023337380.1\|2202905_2203496_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_014884093.1\|2203492_2204254_-	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	1.8e-07	23.0
WP_014884092.1\|2204505_2205552_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	2.8e-19	28.7

DBSCAN-SWA_4

2271748 : 2278677

Escherichia_phage(50.0%)

tRNA,integrase

attL 2259763:2259777|attR 2281793:2281807

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2259763:2259777	attL	NA	NA	NA	NA
WP_023338360.1\|2271748_2272891_+	methyl-accepting chemotaxis sensory transducer	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-09	30.3
WP_014884034.1\|2273047_2274031_+	zinc transporter ZntB	NA	NA	NA	NA
WP_023337353.1\|2273969_2274167_-	hypothetical protein	NA	NA	NA	NA
WP_000025608.1\|2274306_2274489_+	hypothetical protein	NA	NA	NA	NA
WP_014884033.1\|2274516_2275890_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.2e-51	32.6
WP_014884032.1\|2275932_2276868_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	4.0e-142	95.7
WP_038421132.1\|2276917_2278156_-\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	4.6e-170	70.5
WP_014884030.1\|2278157_2278370_-	hypothetical protein	A0A0U2RY08	Escherichia_phage	4.3e-20	64.8
WP_020882485.1\|2278434_2278677_-	DUF4060 family protein	K7PHF4	Enterobacteria_phage	1.3e-33	93.6
2281793:2281807	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3174087 : 3184125

Vibrio_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080297787.1\|3174087_3176184_-	type I-F CRISPR-associated helicase Cas3	A0A2I7RCU8	Vibrio_phage	1.1e-51	27.2
WP_023337010.1\|3176180_3177164_-	type I-F CRISPR-associated endonuclease Cas1	A0A2D0YZM7	Vibrio_phage	4.7e-45	35.9
WP_045307508.1\|3178123_3178567_-	hypothetical protein	NA	NA	NA	NA
WP_038421208.1\|3178997_3181277_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.1e-164	42.0
WP_006174393.1\|3181304_3181625_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	44.9
WP_008499993.1\|3181892_3182114_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	3.6e-17	62.7
WP_023332529.1\|3182184_3184125_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009852

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009851

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP009853

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP009850

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection