CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP009860	Escherichia coli strain ECONIH1 plasmid pECO-824, complete sequence	0 crisprs	NA	0	0	4
NZ_CP009861	Escherichia coli strain ECONIH1 plasmid pECO-b75, complete sequence	0 crisprs	NA	0	0	2
NZ_CP009859	Escherichia coli strain ECONIH1 chromosome, complete genome	4 crisprs	cas3,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,c2c9_V-U4	2	20	13
NZ_CP009862	Escherichia coli strain ECONIH1 plasmid pKPC-629, complete sequence	0 crisprs	NA	0	0	2

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 73501

Macacine_betaherpesvirus(29.41%)

transposase,integrase

attL 23116:23133|attR 66837:66854

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001348615.1\|945_1848_-	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_000817036.1\|2714_3686_-	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	7.0e-174	99.4
WP_000772446.1\|3685_4852_-	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	7.0e-229	100.0
WP_024946706.1\|5439_6195_-	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	2.5e-142	99.6
WP_000016982.1\|6968_7775_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.8e-57	100.0
WP_001159868.1\|7775_8081_-	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_000813634.1\|8082_8301_-	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_000151784.1\|8867_9380_+	hypothetical protein	NA	NA	NA	NA
WP_001542067.1\|9413_10547_-	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_000905949.1\|10713_11487_-	hypothetical protein	NA	NA	NA	NA
WP_000528931.1\|11499_12000_-	hypothetical protein	NA	NA	NA	NA
WP_001261278.1\|12264_12495_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_001034046.1\|12491_12908_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_001144732.1\|12952_16747_-	hypothetical protein	NA	NA	NA	NA
WP_001261286.1\|17127_17358_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_001034044.1\|17354_17771_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_001128474.1\|17845_19411_+	AAA family ATPase	NA	NA	NA	NA
WP_000361402.1\|19395_20418_+	helicase UvrD	NA	NA	NA	NA
WP_000949004.1\|21724_22639_+	iron/manganese ABC transporter substrate-binding protein SitA	NA	NA	NA	NA
WP_000983710.1\|22638_23466_+	iron/manganese ABC transporter ATP-binding protein SitB	A0A1M7XV31	Cedratvirus	3.6e-14	27.0
23116:23133	attL	NA	NA	NA	NA
WP_001101723.1\|23462_24320_+	iron/manganese ABC transporter permease subunit SitC	NA	NA	NA	NA
WP_000968139.1\|24316_25174_+	iron/manganese ABC transporter permease subunit SitD	NA	NA	NA	NA
WP_001318207.1\|26416_26797_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	1.9e-26	55.0
WP_000095526.1\|27176_28370_-	MFS transporter	NA	NA	NA	NA
WP_000602863.1\|28505_30230_+	aerobactin synthase IucA	NA	NA	NA	NA
WP_000011908.1\|30230_31178_+	N(6)-hydroxylysine O-acetyltransferase	NA	NA	NA	NA
WP_001015721.1\|31177_32920_+	aerobactin synthase IucC	NA	NA	NA	NA
WP_000750130.1\|32916_34194_+	NADPH-dependent L-lysine N(6)-monooxygenase	NA	NA	NA	NA
WP_000973519.1\|34275_36477_+	ferric aerobactin receptor IutA	NA	NA	NA	NA
WP_000361611.1\|39482_40460_+	replication initiation protein	J9Q7H0	Salmonella_phage	4.6e-101	63.9
WP_001066953.1\|40744_41485_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	2.0e-24	57.6
WP_042344623.1\|41605_41788_-	hypothetical protein	NA	NA	NA	NA
WP_001072355.1\|42930_44100_+	hypothetical protein	NA	NA	NA	NA
WP_001105060.1\|44295_44589_-	hypothetical protein	NA	NA	NA	NA
WP_000421272.1\|44694_44970_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001387467.1\|44969_45254_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_000562172.1\|45858_46611_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_001022265.1\|46656_47622_-	2-keto-3-deoxygluconate transporter	NA	NA	NA	NA
WP_000710783.1\|47654_48035_-	reactive intermediate/imine deaminase	NA	NA	NA	NA
WP_001077068.1\|48059_48950_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_000796505.1\|49182_49377_-	hypothetical protein	NA	NA	NA	NA
WP_000338039.1\|49921_50800_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_001271561.1\|50789_51677_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_000922702.1\|51687_52512_+	phosphodiesterase	NA	NA	NA	NA
WP_000950177.1\|52517_53591_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.6e-28	33.7
WP_000476108.1\|53583_54894_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001067834.1\|56813_57518_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	3.1e-139	99.6
WP_013362816.1\|57840_59373_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_023909256.1\|59599_59941_-	chaperonin	NA	NA	NA	NA
WP_013362817.1\|59901_60351_-	hypothetical protein	NA	NA	NA	NA
WP_170852050.1\|60865_61036_-	rRNA adenine methyltransferase	E4ZFP9	Streptococcus_phage	3.4e-20	92.7
WP_013362818.1\|60980_61718_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	E4ZFQ0	Streptococcus_phage	6.3e-135	99.6
WP_013362819.1\|61843_61939_-	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA
WP_001067855.1\|62073_62778_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000219391.1\|62899_63805_+	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_000004159.1\|63801_65040_+	MFS transporter	NA	NA	NA	NA
WP_001137892.1\|65039_65624_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001389365.1\|66116_66881_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
66837:66854	attR	NA	NA	NA	NA
WP_000130000.1\|67107_67413_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000184001.1\|67423_68629_-	chromate efflux transporter	NA	NA	NA	NA
WP_000376616.1\|68784_68988_-	hypothetical protein	NA	NA	NA	NA
WP_000259031.1\|69115_69955_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|69948_70296_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000503573.1\|70501_71290_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5	NA	NA	NA	NA
WP_001389366.1\|71420_71894_-	trimethoprim-resistant dihydrofolate reductase DfrA17	A0A1B2IAU3	Erwinia_phage	1.3e-16	34.6
WP_001067834.1\|72796_73501_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	3.1e-139	99.6

DBSCAN-SWA_2

78482 : 83469

Escherichia_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000255944.1\|78482_79505_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001323403.1\|79504_80284_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.5e-139	100.0
WP_023144756.1\|80759_80894_-	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_013023861.1\|81764_81977_-	hypothetical protein	NA	NA	NA	NA
WP_000139341.1\|82107_82668_-	fertility inhibition protein FinO	NA	NA	NA	NA
WP_000205718.1\|82722_83469_-	conjugal transfer pilus acetylase TraX	A0A077JBM8	Xanthomonas_phage	3.2e-09	30.9

DBSCAN-SWA_3

102941 : 112496

Yersinia_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001234469.1\|102941_103763_-	DUF945 domain-containing protein	A0A2C9CYF8	Yersinia_phage	4.4e-44	38.2
WP_000107535.1\|103881_104169_-	hypothetical protein	NA	NA	NA	NA
WP_000275859.1\|104193_104400_-	hypothetical protein	NA	NA	NA	NA
WP_032143370.1\|104401_104590_-	hypothetical protein	NA	NA	NA	NA
WP_001312861.1\|105090_105249_-	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_085947770.1\|105446_106816_-\|transposase	IS3-like element IS150 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.3e-112	100.0
WP_001276232.1\|106975_107695_-	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_000845940.1\|107691_108126_-	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_000117179.1\|108180_110139_-	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	1.3e-22	27.4
WP_000005990.1\|110204_110438_-	DUF905 family protein	NA	NA	NA	NA
WP_000290841.1\|110500_111040_-	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	1.2e-45	73.9
WP_032143370.1\|111273_111462_-	hypothetical protein	NA	NA	NA	NA
WP_016238251.1\|111682_111907_-	hypothetical protein	NA	NA	NA	NA
WP_001348621.1\|111932_112496_-	class I SAM-dependent methyltransferase	A8HNV9	Thalassomonas_phage	1.0e-20	37.3

DBSCAN-SWA_4

118217 : 120103

Vibrio_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040123392.1\|118217_118832_-	DNA methylase	A0A2I7RE86	Vibrio_phage	1.9e-23	36.6
WP_071884080.1\|118830_119181_+	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
WP_000239590.1\|119227_120103_-	class A extended-spectrum beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009861

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 6404

Escherichia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000269912.1\|253_601_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001259435.1\|600_900_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_001523084.1\|1063_1444_+	hypothetical protein	NA	NA	NA	NA
WP_016240784.1\|1547_1973_-	hypothetical protein	A0A222YWI5	Escherichia_phage	3.6e-50	74.5
WP_001523087.1\|2074_2335_+	helix-turn-helix domain-containing protein	A0A248SLB9	Klebsiella_phage	7.2e-09	54.9
WP_033545979.1\|2957_3146_+	hypothetical protein	NA	NA	NA	NA
WP_033545977.1\|3156_4326_-	ORF6N domain-containing protein	Q8VNP5	Enterobacteria_phage	6.2e-52	73.2
WP_000183351.1\|4322_4514_-	hypothetical protein	NA	NA	NA	NA
WP_001523089.1\|5458_5707_-	hypothetical protein	NA	NA	NA	NA
WP_000156167.1\|5750_6404_-	ParA family protein	A0A219YB79	Aeromonas_phage	9.2e-21	32.5

DBSCAN-SWA_2

9488 : 44372

Vibrio_phage(41.94%)

holin,plate,tail,portal,capsid,protease,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001270825.1\|9488_9821_+	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	2.9e-15	39.8
WP_001250512.1\|9824_10202_+	hypothetical protein	A0A2I7R3L8	Vibrio_phage	6.3e-06	35.1
WP_001705004.1\|10371_11439_+	DUF3560 domain-containing protein	NA	NA	NA	NA
WP_000823235.1\|11516_11798_+	hypothetical protein	NA	NA	NA	NA
WP_001521425.1\|11794_12160_+	hypothetical protein	A0A2R2Z313	Escherichia_phage	3.1e-10	55.9
WP_001706266.1\|12189_12348_+	hypothetical protein	NA	NA	NA	NA
WP_040123394.1\|12344_13028_+	hypothetical protein	Q71T76	Escherichia_phage	1.2e-82	66.4
WP_001705006.1\|13030_13375_+	hypothetical protein	NA	NA	NA	NA
WP_040123395.1\|13367_14087_+	ead/Ea22-like family protein	A0A0F6TJR7	Escherichia_coli_O157_typing_phage	1.5e-69	92.6
WP_001271967.1\|14465_14861_+\|holin	phage holin family protein	K7PHB9	Enterobacterial_phage	6.1e-52	82.3
WP_000254764.1\|14847_15144_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.3e-27	63.7
WP_024188806.1\|15127_15673_+	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	2.0e-85	79.6
WP_000147212.1\|15669_15948_+	hypothetical protein	G8C7W1	Escherichia_phage	4.0e-18	52.8
WP_040123396.1\|16624_17212_+	S-adenosylmethionine-binding protein	G9L699	Escherichia_phage	1.8e-79	76.5
WP_040123397.1\|17325_17595_+	hypothetical protein	NA	NA	NA	NA
WP_001222808.1\|17594_17792_+	hypothetical protein	NA	NA	NA	NA
WP_040123398.1\|17866_18166_+	hypothetical protein	NA	NA	NA	NA
WP_167745242.1\|18352_18505_+	hypothetical protein	NA	NA	NA	NA
WP_040123399.1\|18554_18965_+	hypothetical protein	Q8W634	Enterobacteria_phage	1.6e-39	79.6
WP_040123400.1\|19199_19823_+	ParB N-terminal domain-containing protein	A0A0E3JS81	Verrucomicrobia_phage	1.5e-33	43.2
WP_001372310.1\|19822_21196_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_040123403.1\|21236_21932_+	hypothetical protein	A0A1W6JTE1	Pseudomonas_phage	1.3e-28	33.8
WP_001185429.1\|22488_23079_+	ParB N-terminal domain-containing protein	A0A067ZI74	Vibrio_phage	1.6e-40	58.5
WP_001019009.1\|23078_23630_+	hypothetical protein	K4ICN8	Acidithiobacillus_phage	1.7e-07	29.4
WP_001406385.1\|23635_25492_+\|terminase	phage terminase large subunit family protein	A0A059WKL6	Vibrio_phage	8.5e-237	62.7
WP_001523057.1\|25503_25743_+	hypothetical protein	A0A067ZJ01	Vibrio_phage	6.8e-14	52.0
WP_001523059.1\|25739_27314_+\|portal	phage portal protein	A0A067ZJA4	Vibrio_phage	4.6e-191	65.5
WP_016240779.1\|27306_28371_+\|protease	Clp protease ClpP	A0A067ZG37	Vibrio_phage	8.7e-77	48.0
WP_016240780.1\|28380_28764_+	hypothetical protein	NA	NA	NA	NA
WP_001523065.1\|28784_29828_+\|capsid	major capsid protein	A0A059WRQ2	Vibrio_phage	8.8e-74	47.9
WP_001523066.1\|29828_30221_+	hypothetical protein	NA	NA	NA	NA
WP_001083980.1\|30220_30565_+	hypothetical protein	NA	NA	NA	NA
WP_000609134.1\|30561_31047_+	hypothetical protein	A0A067ZIL8	Vibrio_phage	3.0e-16	37.4
WP_001523067.1\|31047_31338_+	hypothetical protein	NA	NA	NA	NA
WP_040123401.1\|31337_32801_+\|tail	phage tail protein	A0A059WKP9	Vibrio_phage	4.2e-146	53.4
WP_000070729.1\|32817_33339_+\|tail	phage major tail tube protein	A0A067ZJA9	Vibrio_phage	1.5e-50	57.8
WP_000450805.1\|33348_33630_+\|tail	phage tail assembly protein	A0A0C5AEP1	Bacteriophage	1.0e-05	37.4
WP_001523070.1\|33784_36577_+\|tail	phage tail tape measure protein	A0A097P6S4	Vibrio_phage	4.8e-18	39.6
WP_001705025.1\|36777_37779_+	phage late control D family protein	A0A067ZG47	Vibrio_phage	1.3e-69	42.5
WP_001523073.1\|37781_38402_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	1.0e-29	51.6
WP_000635200.1\|38398_38866_+\|tail	phage tail protein	NA	NA	NA	NA
WP_001523074.1\|38862_39183_+	hypothetical protein	NA	NA	NA	NA
WP_040123402.1\|39179_40304_+\|plate	baseplate J/gp47 family protein	A0A0C5AEG2	Bacteriophage	4.9e-86	44.2
WP_001523076.1\|40296_40878_+\|tail	phage tail protein I	A0A0C5AJ63	Bacteriophage	2.1e-16	40.0
WP_001523079.1\|40908_43755_+\|tail	tail fiber protein	Q858V4	Yersinia_virus	8.6e-172	46.4
WP_001523080.1\|43754_44372_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	3.5e-86	80.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP009859

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009859_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009859_1

1029641-1029788

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP009859_1

>merge|NZ_CP009859|1|1029641-1029788|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAAGGAACAATCTTGCAAAGGCTGTGAAAGTTGGCGTTCACTGCCGTACAGGCAGCTTAGAAATTCACTGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGGCAGATAAAATG

>NZ_CP009859|1|1|1029641-1029788|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	GGAACAATCTTGCAAAGGCTGTGAAAGTTGGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTCACTGGTAACATACTCCACCCGCCCACCAT
GTTCACTGCCGTACAGGCAGATAAAATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009859.1\|WP_000488716.1\|1019237_1019933_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP009859.1\|WP_000282209.1\|1031395_1033213_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009859.1\|WP_000599806.1\|1020358_1022017_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP009859.1\|WP_022645441.1\|1017880_1018780_-\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NZ_CP009859.1\|WP_001333439.1\|1038741_1043700_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|350195
NZ_CP009859.1\|WP_000579535.1\|1034846_1035044_+\|DUF3987-domain-containing-protein	unknown	unknown	gnl\|CDD\|379041
NZ_CP009859.1\|WP_032217988.1\|1045612_1047502_-\|enterotoxin	unknown	unknown	gnl\|CDD\|269878
NZ_CP009859.1\|WP_000622487.1\|1043696_1045133_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009859.1\|WP_000520781.1\|1026798_1027119_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP009859.1\|WP_000335702.1\|1035261_1036695_+\|DUF3987-domain-containing-protein	unknown	unknown	gnl\|CDD\|379041
NZ_CP009859.1\|WP_000746460.1\|1023120_1024236_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP009859.1\|WP_000282077.1\|1037515_1038079_+\|inovirus-type-Gp2-protein	unknown	unknown	gnl\|CDD\|371695
NZ_CP009859.1\|WP_000410785.1\|1026251_1026476_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP009859.1\|WP_000279872.1\|1030006_1031209_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271182
NZ_CP009859.1\|WP_032161888.1\|1034323_1034620_+\|AlpA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
NZ_CP009859.1\|WP_022645440.1\|1016085_1017738_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP009859.1\|WP_022645444.1\|1024232_1026179_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP009859.1\|WP_024167628.1\|1045237_1045444_+\|methyltransferase	unknown	unknown	gnl\|CDD\|184956
NZ_CP009859.1\|WP_001400542.1\|1022013_1022970_-\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP009859.1\|WP_000934041.1\|1027149_1029426_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828

Protein	Function_ID	Function_description	E-value
NZ_CP009859.1\|WP_000488716.1\|1019237_1019933_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	7.82992e-144
NZ_CP009859.1\|WP_001333439.1\|1038741_1043700_+\|AAA-family-ATPase	gnl\|CDD\|350195	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases. The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	8.52173e-46
NZ_CP009859.1\|WP_000599806.1\|1020358_1022017_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP009859.1\|WP_022645441.1\|1017880_1018780_-\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	2.06035e-116
NZ_CP009859.1\|WP_000579535.1\|1034846_1035044_+\|DUF3987-domain-containing-protein	gnl\|CDD\|379041	pfam13148, DUF3987, Protein of unknown function (DUF3987). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	2.27496e-10
NZ_CP009859.1\|WP_032217988.1\|1045612_1047502_-\|enterotoxin	gnl\|CDD\|269878	cd06592, GH31_NET37, glucosidase NET37. NET37 (also known as KIAA1161) is a human lamina-associated nuclear envelope transmembrane protein. A member of the glycosyl hydrolase family 31 (GH31) , it has been shown to be required for myogenic differentiation of C2C12 cells. Related proteins are found in eukaryotes and prokaryotes. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.	0.00342274
NZ_CP009859.1\|WP_000520781.1\|1026798_1027119_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP009859.1\|WP_000335702.1\|1035261_1036695_+\|DUF3987-domain-containing-protein	gnl\|CDD\|379041	pfam13148, DUF3987, Protein of unknown function (DUF3987). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	3.70543e-96
NZ_CP009859.1\|WP_000746460.1\|1023120_1024236_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP009859.1\|WP_000282077.1\|1037515_1038079_+\|inovirus-type-Gp2-protein	gnl\|CDD\|371695	pfam11726, Inovirus_Gp2, Inovirus Gp2. Isoform G2P plays an essential role in viral DNA replication; it binds to the origin of replication and cleaves the dsDNA replicative form I (RFI) and becomes covalently bound to it via phosphotyrosine bond, generating the dsDNA replicative form II (RFII).	9.99526e-05
NZ_CP009859.1\|WP_000410785.1\|1026251_1026476_-\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP009859.1\|WP_000279872.1\|1030006_1031209_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.82526e-55
NZ_CP009859.1\|WP_032161888.1\|1034323_1034620_+\|AlpA-family-transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	1.80966e-22
NZ_CP009859.1\|WP_022645440.1\|1016085_1017738_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP009859.1\|WP_022645444.1\|1024232_1026179_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP009859.1\|WP_024167628.1\|1045237_1045444_+\|methyltransferase	gnl\|CDD\|184956	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional.	3.18117e-24
NZ_CP009859.1\|WP_001400542.1\|1022013_1022970_-\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	1.4029e-131
NZ_CP009859.1\|WP_000934041.1\|1027149_1029426_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0

>NZ_CP009859.1|WP_000934041.1|1027149_1029426_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP009859.1|WP_000520781.1|1026798_1027119_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP009859.1|WP_000410785.1|1026251_1026476_-|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP009859.1|WP_022645444.1|1024232_1026179_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVSNPPAIEKVNVAGGTEPVVNTASGWRQFASGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>NZ_CP009859.1|WP_000746460.1|1023120_1024236_+|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP009859.1|WP_001400542.1|1022013_1022970_-|DUF535-domain-containing-protein
MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAELTFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG
>NZ_CP009859.1|WP_000599806.1|1020358_1022017_+|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP009859.1|WP_000488716.1|1019237_1019933_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRN
>NZ_CP009859.1|WP_022645441.1|1017880_1018780_-|L-lysine-exporter-LysO
MFSGLLIILVPLILGYLIPLRQKAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNYHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP009859.1|WP_022645440.1|1016085_1017738_-|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIATLQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIVLREALKAQCLAVDANAHVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETSKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA
>NZ_CP009859.1|WP_000279872.1|1030006_1031209_+|tyrosine-type-recombinase/integrase
MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTYPEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVAIPTFADAARRVHAELSPGWENPKHVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGWAHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMVILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDELVFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERALAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQIVNK
>NZ_CP009859.1|WP_000282209.1|1031395_1033213_-|hypothetical-protein
MYNFITIMYDVFSCFGVLAKNQNSRDIRNIKNFSSHQHSLGDMFDELINIIDKEQVLSKEQRKVIFRRYEDLYVKLMHYSVFTDKTHQIIKQKYFNDIVPMILALDIRNTYRPDNEMAFYYHIHSFLTQIPDNEDDIYHAARTYLRNYVKLCLSGYTPANAHFKDIFDGVYEFIRNIRKNSTPGKTKLIATINTCKETCKHLLYLSNEDKEKIISDLDKVQVACYYLTILLAFERRTSLTSTLATLYKMLISEREVSEYECQLLYLTNPIDVMNILNKYIYYFPNENSPFYTLKIDSALSWDAIDAIRDYSISDIYLYPEQKTINCVVEIENIVFGGYIYTLNNGVTLQNIENSLKDSSCHYVLNGYTEFVNCLRQLTSGKTESVHRTINKLNYEKLPFGFIIAAFAILKIAFKIKFSKNHVNIRALLNDINYFMTYQGESINLISLDHEYPESCLQNDTNTYLLGRVIFLYNSMIYKFINCQEHETNNIHSAMINNLLQEVDIALGKINDIIDSRNISAPHELANILTREKILTTREKKGNLISLFDGFTLFHCVGMITFLIHYLRTPEEKVENIFMLYGADKNNKLRRRLIYDALGIIQSQQE
>NZ_CP009859.1|WP_032161888.1|1034323_1034620_+|AlpA-family-transcriptional-regulator
MPDQSGHCRTPSRILRMPELSQLLGISRSTIYEKMNPLSKYYDATFPRPVRLGSGSVGWRSSAIDEWLTLHTVPARSAVKDVNDEVRHTLSSDMTMSR
>NZ_CP009859.1|WP_000579535.1|1034846_1035044_+|DUF3987-domain-containing-protein
MIGKAIIKAQYNKQVPLTLVAMSVLTAMSIACQNQVDVCSPGNLRGAVNIYTMVLEKGKRPGERY
>NZ_CP009859.1|WP_000335702.1|1035261_1036695_+|DUF3987-domain-containing-protein
MCLLAPENPYPIYALPPLVRNAIIETQKNTQAPLAMVATSALTAISIACQNQIDVCRPGNLHGPVNLYSLILADSGERKTTVDKVFMKAFYLRDEALAEEYAKLVENYSTEKEIWEQKQKALESKFHKEIRAGKDYKATESELETHLNKPPVPPQIRRTIFNETTIEGMLKYYSDSNRSFALVSSEGGVIFDSRAMSKLGIINTLWDGGSLFIDRKSSPGINLKEPRLTISVMIQPDVYHKGFCTRKKEIVKTSGHHARFLMCQPTSTQGTRIITGDNYSSQYQDLFEERINELIDESLAMSGERRCLHFSPQAARIWTDYYNDVESKLGGLGPLRHCREYAAKNAEYMARLAGLIYHSSGEEGEISPYTAEMARELAIWYGNEYVRLSNPLTFDNSALTVPMRLIPEELELFNWIKSYCIEKGILCMKKNDILQRGPNRFRKKDKINWLLDLLYEQNRVVPVIEGKTLCVAPNFDL
>NZ_CP009859.1|WP_000282077.1|1037515_1038079_+|inovirus-type-Gp2-protein
MYNANPNYEMDFMILKDVNEHMEGLFQRFSKLLPFRIDFAYRKDTPSFGHSCRHSMCIEMHRLLSETQTMLAGYYWVMEYTSNKGLHIHFIGYLDGQRHKKFYRISRQLGDIWSRITEGEGYFHLCSTKDKYPVRIDHVIHYSDKSAVDGLRYALSYLAKQDQKEHGIILMRSRLPEKSNRGRPRHN
>NZ_CP009859.1|WP_001333439.1|1038741_1043700_+|AAA-family-ATPase
MWDGGLQEQEVLAIEKIKAAFSVNVSKPDKPFRSGSISEQLKSYGFIGNEMFPWKGYAGFRFVEAKKEGEFDLVIVTHCNVIIVELKDWNHQPVTARGDTWFKGDKNMGRSPVSVTRSKKFMLDKKLKRLVDRFTNKGYIPIVHFFVVMTGNADFSALPEEQRRHTISLKDFLKFADRGSFNNYFKPHPATKVLNKDFHLFDDLFLGPQTAPKALRVNGYEANDMIFEHPKKVYREYLAKSEISTNSEALLRVWNFRNITGTKANTPEGRAQIVSREREVLQHINHQNRDLYNHCLRSLTSFQKDEVTAEYSEVYEVPPGHVRFNEFIGKYGKNFSDMDRLNVVKLLIAKFSDLHEMKIAHRDVADHSLWISPSKEVALSNFISAYHQPAGTVGDYRKLLSVGAVHVKDMLDKGELTPFQQDVHTLGLVAWHLFSGMRMSPKSLEKVQDNMLNSQHWYSSVLRDAVAAKFTSATEFFDALKQAEPAGKDIPTFDDTELDPYRHAINHARQYPEDDGFQFQVETVDKEVYISKGRLVKAWLNVGGQGYDPSINFQVLKFLKQVERLSSVKTTYLPQIREFGIASKSSSLYMVTDQVQGETWDKIAVPDDEKIDLIGKFVAAVEHLHGLGVSHGDIHPGNVIFETQSRLLFLIDIPDFSPSGDEPKNHSYSPEYIDNCTSFERDNYAVMKMSCELLGMSWGLESDIYPTIANAIRAELEDPVFGFKDLGRFKKAIDSNDLVPEQDLIEITAGNADEIISILPDNGHLYVKVKSNPKAPAEVNVTFSGIGGSFTAVFNKDQKTLVHGFRPRARVTIRKQDIDESQFEIDTGIKIIPGSPQDLSALTVLLNEEESFARAIELIAATEDVQVQEPLTLQLKDTFARLDKQTLEPSLREVLEIPTVKLWRAILDTETESYPNIEISGEVVPVADAHGELLLPYSADVDPLGAFRSSDEVEALQVDQEGVERFIGEVSLKKSELKEIRLVKVSSAAFKLKDSDIVFFRTRPTRASYQKRKRALERLLDRESVLPDLIDLFDPSCKQAAQNYGITLSDTDFARYDREDQHGNKISLNEQQRKAFNKLVNNGPLSLLQGPPGTGKTEFIAAFVHYLIEKQNTKRILLVSQSHEAVNTAAERIRKHCSRLGTELDVVRFSNREGAVSPGLKDVYSHAITTEKRELFNAEIKYRVEALSEAIGLEPGFISGVVLAELNLFRQIDHLEKLLYQVNNLTDSNESNELKDIAVELDFSIRSKLSQEYGINLDNGVKVSAAKDILISKLCTEYGVRPDEARRVKALAKISRDMQDAMSGERVNLDEFYSRSRQLVAGTCVGIGQGHIGIQENIYDWVIIDEAARSISSELAIAMQSARRVLLVGDHMQLPPLYSDAHKAALARKLGINNSRTEIDEVLRSDFARAFNSAYGAQTSAALMTQYRMAPPIGNLVSKTFYDGKLLNGVRAIPDVYQQAPEALRSVVTWLDTANQGHRAHHLEDRGTSIYNRCEADEIISVLKQVSENEEFVAKLSKLVSKDEAAIGVICMYAEQKRLLRQKFNQEIWSEGFKDIVKIDTVDSYQGKENRIIILSLTRSDKQHSPGFLRVPNRINVAMSRAMDRLLIVGNADIWKGNNKELPLGYVVSYMAERGQEAGYRFLSAQQGGKKK
>NZ_CP009859.1|WP_000622487.1|1043696_1045133_+|hypothetical-protein
MISDNKVTYHEVDFLLPAQRFNIQFSYVSQKGLPFIREFVLRLVHVASMSKAQIATYFGLTHRETEEAISDLVQRGELTLSSDGRLALTDKSNGYFSEVGEIPHLSTIQDSGCTLSFDLATFSCFSNQAFQDHWRGGVTLKVDDNNISQSEKLVEKHFQYQFNQILDKGYLSHLQVQVGKEQPSIYTVNSVNKLRQIPLRLTTEFKMDSDGKAVEREDYEQLNSSECVHELMAVEIARLSRHNNTMSIFKAMQSINDDLTLKLFDSKTNRLNPLFIKDMQALEEYSSSGRTTFLGPVYSKNNWEKLQKALAPALNQRIRDKTDYGGSPFIWVAPSDPYWSKSIRFISSLSNFLSKSATKDKQLYKPVLYVPVRDAADARVARQWKYELGQFHEYAKGLVEGLLDGNVEILHLEDELSAVIYHISQPEILPVTMPLGFITTNKETVKIIGTLVTEYIKGTTGFDKFHDCGAISAMIKKG
>NZ_CP009859.1|WP_024167628.1|1045237_1045444_+|methyltransferase
MAPLNDALYRYVMNTRLGTIHGTSVGELLAWIKEDENPRKGEMVLIIEGHKAQDDELPADALRTLALL
>NZ_CP009859.1|WP_032217988.1|1045612_1047502_-|enterotoxin
MKKVLTLSLLALCVSHGAAAANYALNNDNIALLFDDTNSTVVVKDNKANHPLTPQELFFLTLPDESKIHTADFKIKHVEKQDNAIVIDFTHPNFNVTVKLNLVKGKYANIGYTIAAVGQPRDVAKITFFPTQKQSQAPYVDGAINSSPIVADSFFILPDKPIVNTYAYEATTNLNVELKTPIQPEAPVSFTTWFGTFPETSQLRRSVNQFINDVRPRPYKPYLHYNSWMDIGFFTPYTEQDVLGRMDEWNKEFITGRGVALDAFLLDDGWDDLTGRWLFGTAFRNGFSKVREKADSLHSSVGLWLSPWGGYNKPRDVRVSHAKEYGFETVDGKLALSGANYFKNFNERIIKLIKNEHITSFKLDGMGNASSHIKGSSFASDFDASIALLHNMRSATPNLFINLTTGTDASPSWLFYADSIWRQGDDINLYGSGTPVQQWMTYRDAETYRSIVRKGPLFPLNSLMYHGIVSAENAYYGLEKVQTDSDFADQVWSYFATGTQLQELYITPSMLNKVKWDTLAKAAKWSKENASVLVDTHWIGGDPTALAVYGWASWSKDKAILGLRNPSDKPQAYYLDLAKDFEIPTGDVAQFSLKAVYGSNKTVPVEYKNATVITLQPLETLVFEAVPVN

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Crispr_ID: NZ_CP009859_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009859_2

3180214-3181097

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACTC	PILER-CR

14 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP009859_2

>merge|NZ_CP009859|2|3180214-3181097|CRT,CRISPRCasFinder,PILER-CR
GCGAGTTCTACCGCAGGGGCGGGGAATTCTAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGGCGCGGGGAACTCGCCGGAAAATATTCATGATGGGGGTGGTTATGGCGGTTTATCCCCGCTGGCGCGGGGAACTCGGGGCCGCCGTGTTCACATTTGCCTAATTTCCCGGTTTATCCCCGCTGGCGCGGGGAACTCAACATGTCTTTCGTCAATTTTGGCGCTATAAACGGTTTATCCCCGCTGGCGCGGGGAACTCTATATAAACGAGGTGAATTTATGGAAACTGTACGGTTTATCCCCGCTGGCGCGGGGAACTCGTTAGTTTTCTGAAAAAATTGTTTTCTTACGCTGGTTTATCCCCGCTGGCGCGGGGAACTCAATATTGTCGTGGACAAATGCCGGTGTTATTGCGGTTTATCCCCGCTGGCGCGGGGAACTCTTCGAGACACTTCTCTGCAAAATTAATGAAATCGGTTTATCCCCGCTGGCGCGGGGAACTCCAGGTATCAAGAAATAATCGAAGCCTTCATGACGGTTTATCCCCGCTGGCGCGGGGAACTCAATTGATTGCTGGGTGATATTGGAAAATGTTGCGGTTTATCCCCGCTGGCGCGGGGAACTCTACCGTACAGACTGCCGGATATTATTTTTTTGCGGTTTATCCCCGCTGGCGCGGGGAACTCCGACGTTCGACGAAATGCGCGATGGCGGTCGGCGGTTTATCCCCGCTGGCGCGGGGAACTCTTCTGCGTCCCCGATGTCTGGCCCGACTGGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTATATGACCGGAACACTTCCGCCTGACGTTTGCGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP009859|2|1|3180214-3181097|CRT
GCGAGTTCTACCGCAGGGGCGGGGAATTC	TAAGTGATATCCATCATCGCATCCAGTGCGCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCGGAAAATATTCATGATGGGGGTGGTTATGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GGGGCCGCCGTGTTCACATTTGCCTAATTTCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AACATGTCTTTCGTCAATTTTGGCGCTATAAA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TATATAAACGAGGTGAATTTATGGAAACTGTA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GTTAGTTTTCTGAAAAAATTGTTTTCTTACGC
TGGTTTATCCCCGCTGGCGCGGGGAACTC	AATATTGTCGTGGACAAATGCCGGTGTTATTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TTCGAGACACTTCTCTGCAAAATTAATGAAAT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CAGGTATCAAGAAATAATCGAAGCCTTCATGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AATTGATTGCTGGGTGATATTGGAAAATGTTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TACCGTACAGACTGCCGGATATTATTTTTTTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CGACGTTCGACGAAATGCGCGATGGCGGTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TTCTGCGTCCCCGATGTCTGGCCCGACTGGTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TATATGACCGGAACACTTCCGCCTGACGTTTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP009859|2|2|3180275-3181097|CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCGGAAAATATTCATGATGGGGGTGGTTATGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GGGGCCGCCGTGTTCACATTTGCCTAATTTCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AACATGTCTTTCGTCAATTTTGGCGCTATAAA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TATATAAACGAGGTGAATTTATGGAAACTGTA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GTTAGTTTTCTGAAAAAATTGTTTTCTTACGC
TGGTTTATCCCCGCTGGCGCGGGGAACTC	AATATTGTCGTGGACAAATGCCGGTGTTATTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TTCGAGACACTTCTCTGCAAAATTAATGAAAT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CAGGTATCAAGAAATAATCGAAGCCTTCATGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AATTGATTGCTGGGTGATATTGGAAAATGTTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TACCGTACAGACTGCCGGATATTATTTTTTTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CGACGTTCGACGAAATGCGCGATGGCGGTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TTCTGCGTCCCCGATGTCTGGCCCGACTGGTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TATATGACCGGAACACTTCCGCCTGACGTTTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP009859|2|1|3180337-3181097|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GGGGCCGCCGTGTTCACATTTGCCTAATTTCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AACATGTCTTTCGTCAATTTTGGCGCTATAAA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TATATAAACGAGGTGAATTTATGGAAACTGTA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GTTAGTTTTCTGAAAAAATTGTTTTCTTACGC
TGGTTTATCCCCGCTGGCGCGGGGAACTC	AATATTGTCGTGGACAAATGCCGGTGTTATTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TTCGAGACACTTCTCTGCAAAATTAATGAAAT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CAGGTATCAAGAAATAATCGAAGCCTTCATGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AATTGATTGCTGGGTGATATTGGAAAATGTTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TACCGTACAGACTGCCGGATATTATTTTTTTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CGACGTTCGACGAAATGCGCGATGGCGGTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TTCTGCGTCCCCGATGTCTGGCCCGACTGGTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TATATGACCGGAACACTTCCGCCTGACGTTTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009859.1\|WP_001295182.1\|3172087_3172849_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP009859.1\|WP_022646032.1\|3176566_3177994_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP009859.1\|WP_000246131.1\|3174354_3175065_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP009859.1\|WP_022646039.1\|3187186_3189853_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP009859.1\|WP_022646040.1\|3190211_3190946_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP009859.1\|WP_000752798.1\|3184788_3185271_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|187801
NZ_CP009859.1\|WP_001173673.1\|3175961_3176567_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP009859.1\|WP_022646034.1\|3181202_3181487_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP009859.1\|WP_000517476.1\|3175083_3175395_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP009859.1\|WP_001219242.1\|3173875_3174355_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP009859.1\|WP_022646031.1\|3172829_3173879_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP009859.1\|WP_022646033.1\|3179155_3180193_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP009859.1\|WP_022646037.1\|3183684_3184776_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP009859.1\|WP_022646036.1\|3183007_3183682_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_CP009859.1\|WP_000372392.1\|3177995_3178904_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP009859.1\|WP_022646035.1\|3181488_3182406_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP009859.1\|WP_000281399.1\|3182421_3183021_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP009859.1\|WP_001246104.1\|3175588_3175912_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP009859.1\|WP_022646038.1\|3185263_3186772_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|236613
NZ_CP009859.1\|WP_001290706.1\|3191019_3192732_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402

Protein	Function_ID	Function_description	E-value
NZ_CP009859.1\|WP_001295182.1\|3172087_3172849_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP009859.1\|WP_022646032.1\|3176566_3177994_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP009859.1\|WP_000246131.1\|3174354_3175065_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.32778e-121
NZ_CP009859.1\|WP_022646039.1\|3187186_3189853_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	0
NZ_CP009859.1\|WP_022646040.1\|3190211_3190946_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.62447e-137
NZ_CP009859.1\|WP_000752798.1\|3184788_3185271_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187801	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.51297e-33
NZ_CP009859.1\|WP_001173673.1\|3175961_3176567_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP009859.1\|WP_022646034.1\|3181202_3181487_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.20986e-62
NZ_CP009859.1\|WP_000517476.1\|3175083_3175395_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP009859.1\|WP_001219242.1\|3173875_3174355_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP009859.1\|WP_022646031.1\|3172829_3173879_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP009859.1\|WP_022646033.1\|3179155_3180193_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP009859.1\|WP_022646037.1\|3183684_3184776_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	7.42279e-152
NZ_CP009859.1\|WP_022646036.1\|3183007_3183682_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	8.37717e-102
NZ_CP009859.1\|WP_000372392.1\|3177995_3178904_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP009859.1\|WP_022646035.1\|3181488_3182406_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.75252e-159
NZ_CP009859.1\|WP_000281399.1\|3182421_3183021_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	4.3792e-101
NZ_CP009859.1\|WP_001246104.1\|3175588_3175912_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP009859.1\|WP_022646038.1\|3185263_3186772_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|236613	PRK09693, PRK09693, Cascade antiviral complex protein; Validated.	0
NZ_CP009859.1\|WP_001290706.1\|3191019_3192732_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0

>NZ_CP009859.1|WP_022646033.1|3179155_3180193_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVEATNWNLGNKDGYQQRSKTPAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIILPLVKKLAKAS
>NZ_CP009859.1|WP_000372392.1|3177995_3178904_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP009859.1|WP_022646032.1|3176566_3177994_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLILIDRLSNVTVGAGMVHEPVSQATAAPSQFSVFELELNALVRRHFPHWGARDLLGDK
>NZ_CP009859.1|WP_001173673.1|3175961_3176567_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP009859.1|WP_001246104.1|3175588_3175912_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP009859.1|WP_000517476.1|3175083_3175395_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP009859.1|WP_000246131.1|3174354_3175065_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKHVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP009859.1|WP_001219242.1|3173875_3174355_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP009859.1|WP_022646031.1|3172829_3173879_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHSREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELVELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP009859.1|WP_001295182.1|3172087_3172849_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NZ_CP009859.1|WP_022646034.1|3181202_3181487_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSARIREMIWEQISGLAEEGNVVMAWATNTESGFEFQTFGVNRRTPVDLDGLRLVSFLPV
>NZ_CP009859.1|WP_022646035.1|3181488_3182406_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYVLLAKQYGVKWNGRRYDPKDWEKGDTVNQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS
>NZ_CP009859.1|WP_000281399.1|3182421_3183021_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSKVIIARAWSRDLYQLHQGLWHLFPNRPDAARDFLFHVEKRNTPEGCHVLLQSAQMPVSTAVATVIKTKQVEFQLQVGVPLYFRLRANPIKTILDNQKRLDSKGNIKRCRVPLIKEAEQIAWLQRKLGNAARVEDVHPISERPQYFSGDGKSGKIQTVCFEGVITINDAPALIDLVQQGIGPAKSMGCGLLSLAPL
>NZ_CP009859.1|WP_022646036.1|3183007_3183682_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MRSYLILRLAGPMQAWGQPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQALSESVQFAVRCDELILDDRRVSVTGLRDYHTVLGAREDYRGLKSHETIQTWREYLCDASFTVALWLTPHATMVISELEKAVLKPRYTPYLGRRSCPLTHPLFLGTCKASDPQKALLNYEPVGGDIYSEESVTGHYLKFTARDEPMITLPRQFASREWYVIKGGMDVSQ
>NZ_CP009859.1|WP_022646037.1|3183684_3184776_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSDYYAQNIGESSLRTIHLAQLRDVLRQKLGERFDQKIIDKTLALLSGKLVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMATSGMMSELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPITAQVKQMPTLEQLKSWVRNNGEA
>NZ_CP009859.1|WP_000752798.1|3184788_3185271_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MADEIDAMALYRAWQQLDNGACAQIRRVSEPDELRDIPAFYRLVQPFGWENPRHQQALLRMVFCLSAGKNVIRHQDKKPEQTTGISLGRALANSGRINERRIFQLIRADRTADMVQLRRLLTHAEPVLDWPLMARMLTWWGKRERQQLLEDFVLTTNKNA
>NZ_CP009859.1|WP_022646038.1|3185263_3186772_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLLIDNWIPVRPRNGGEVQIINLQSLYCSRDQWRLSLPRDDMELAALALLVCIGQIIAPAKDDVEFRHRIMNPLTEDEFQQLIAPWIDMFYLNHAEHPFMQTKGVKANDVTPMEKLLAGVSGATNCAFVNQPGQGEALCGGCTAIALFNQANQAPGFGGGFKSGLRGGTPITTFVCGIDLRSTVLLNVLTIPRLQKQFPNELHTENQPTWVKPVKPNESVPASSIGFVRGLFWQPAHIELCDPIGIGKCSCCGQESNLRYTGFLKEKFTFTVNGLWPHPHSPCLVTVKKGEVEEKFLAFTTSAPSWTQISRVVVDKIIQNENGNRVAAVVNQFRNIAPQSPLELIMGGYRNNQASILERRHDVLMFNQGWQQYGNVINEIVTVGLGYKTALRKALYTFAEGFKNKDFKGAGVSVHETAERHFYRQSELLIPDVLANINFSQADEVIADLRDKLHQLCEMLFNQSEAPYAHHPKLISTLALARATLYKHLRELKPQGGPSNG
>NZ_CP009859.1|WP_022646039.1|3187186_3189853_-|CRISPR-associated-helicase/endonuclease-Cas3
MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWEQSVVLQNAFCQNEMLSKQMVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSPGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFKEDAPSNINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPAAPGLTVIEAPTGSGKTETALAYAWKLIDQQLADSVIFALPTQATANAMLSRMEANASRLFTSPNLILAHGNSRFNHLFQSIKSRAFTEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPEENNSAYPLINWRGVNGAQRFDLLAHSEQLPPRFSIRPEPIYLADMLPDLRMLERMIVAANAGAQVCLICNLVDVAQLCHQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEVPLASVLLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVIKGMDKYESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYLQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRNFSEVVDEDGVLWLEGKQNQDGWIWQGNNIVITYTRDEGMTRVIPANPK
>NZ_CP009859.1|WP_022646040.1|3190211_3190946_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWNNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP009859.1|WP_001290706.1|3191019_3192732_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD

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Crispr_ID: NZ_CP009859_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009859_3

3206644-3207772

Unclear

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
GGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

18 spacers

The CRISPR arrays of NZ_CP009859_3

>merge|NZ_CP009859|3|3206644-3207772|CRISPRCasFinder,CRT,PILER-CR
TGGTTCATCCCCGCTGGCGCGGGGAACACGTCCTGTTTTTGACCGGCGGTAAATGTTGCCTGCGGTTTATCCCCGCTGGCGCGGGGAACACAATATCCGTTCCTCGCTCTGCGTTTTCGTTGACGGTTTATCCCCGCTGGCGCGGGGAACACGGTCGGGTATTTCATTATGCATCCTGAACTAACGGTTTATCCCCGCTGGCGCGGGGAACACTATGCGCTTGCTGCTGCGTTGATGTACGCGGCCGGTTTATCCCCGCTGGCGCGGGGAACACTTAACTACCTGAACACCGGGAAGACTCCGGACCGGTTTATCCCCGCTGGCGCGGGGAACACGATTCAATGTCCGACGCATCCAAGTAAATATTCGGTTTATCCCCGCTGGCGCGGGGAACACGGATGAGCAGGGAGCAACAAAAGTAGCCGGAATGGTTTATCCCCGCTGGCGCGGGGAACACCCATACATTAACACGGTGTGGCCACATTTCAACGGTTTATCCCCGCTGGCGCGGGGAACACGCGCGGCCGCGATATCGTTAGCACTGGCTCCCGCGGTTTATCCCCGCTGGCGCGGGGAACACCAAAACACCTGAACGTTGAGATAGGGCTAAATCGGTTTATCCCCGCTGGCGCGGGGAACACAGGTTAAAGAGGCGCGCCGGGCGCTGGCTGGGCGGTTTATCCCCGCTGGCGCGGGGAACACATCCGTTAATTATTGAGAGAGCTATCAGCTATCGGTTTATCCCCGCTGGCGCGGGGAACACTCTAATTGCGCTTTGATAAATGGAGTTAAAGCCGGTTTATCCCCGCTGGCGCGGGGAACACGAATTCGGAATCACATTAAAAGGGAACCCGATAGGTTTATCCCCGCTGGCGCGGGGAACACCCAGGTCCCATTTGTCGATCGGCAGCGCCATTCGGTTTATCCCCGCTGGCGCGGGGAACACTGTTAATTCAGCAAGTTGAGATTGTGTCAGTCCGGTTTATCCCCGCTGGCGCGGGGAACACAAGAGAACAGCTTATATCTGATGCCGGTTTGCCGGTTTATCCCCGCTGGCGCGGGGAACACACACCGGCGAGATCGTATTTTTTGCCGCTGAGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP009859|3|3|3206644-3207772|CRISPRCasFinder
TGGTTCATCCCCGCTGGCGCGGGGAACAC	GTCCTGTTTTTGACCGGCGGTAAATGTTGCCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATATCCGTTCCTCGCTCTGCGTTTTCGTTGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTCGGGTATTTCATTATGCATCCTGAACTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATGCGCTTGCTGCTGCGTTGATGTACGCGGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTAACTACCTGAACACCGGGAAGACTCCGGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATTCAATGTCCGACGCATCCAAGTAAATATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGATGAGCAGGGAGCAACAAAAGTAGCCGGAA
TGGTTTATCCCCGCTGGCGCGGGGAACAC	CCATACATTAACACGGTGTGGCCACATTTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGCGGCCGCGATATCGTTAGCACTGGCTCCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAACACCTGAACGTTGAGATAGGGCTAAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGTTAAAGAGGCGCGCCGGGCGCTGGCTGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCCGTTAATTATTGAGAGAGCTATCAGCTAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTAATTGCGCTTTGATAAATGGAGTTAAAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATTCGGAATCACATTAAAAGGGAACCCGAT
AGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGGTCCCATTTGTCGATCGGCAGCGCCATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTTAATTCAGCAAGTTGAGATTGTGTCAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAGAGAACAGCTTATATCTGATGCCGGTTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACACCGGCGAGATCGTATTTTTTGCCGCTGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP009859|3|2|3206644-3207772|CRT
TGGTTCATCCCCGCTGGCGCGGGGAACAC	GTCCTGTTTTTGACCGGCGGTAAATGTTGCCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATATCCGTTCCTCGCTCTGCGTTTTCGTTGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTCGGGTATTTCATTATGCATCCTGAACTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATGCGCTTGCTGCTGCGTTGATGTACGCGGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTAACTACCTGAACACCGGGAAGACTCCGGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATTCAATGTCCGACGCATCCAAGTAAATATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGATGAGCAGGGAGCAACAAAAGTAGCCGGAA
TGGTTTATCCCCGCTGGCGCGGGGAACAC	CCATACATTAACACGGTGTGGCCACATTTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGCGGCCGCGATATCGTTAGCACTGGCTCCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAACACCTGAACGTTGAGATAGGGCTAAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGTTAAAGAGGCGCGCCGGGCGCTGGCTGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCCGTTAATTATTGAGAGAGCTATCAGCTAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTAATTGCGCTTTGATAAATGGAGTTAAAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATTCGGAATCACATTAAAAGGGAACCCGAT
AGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGGTCCCATTTGTCGATCGGCAGCGCCATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTTAATTCAGCAAGTTGAGATTGTGTCAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAGAGAACAGCTTATATCTGATGCCGGTTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACACCGGCGAGATCGTATTTTTTGCCGCTGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP009859|3|2|3206645-3207772|PILER-CR
GGTTCATCCCCGCTGGCGCGGGGAACAC	GTCCTGTTTTTGACCGGCGGTAAATGTTGCCTGC
GGTTTATCCCCGCTGGCGCGGGGAACAC	AATATCCGTTCCTCGCTCTGCGTTTTCGTTGAC
GGTTTATCCCCGCTGGCGCGGGGAACAC	GGTCGGGTATTTCATTATGCATCCTGAACTAAC
GGTTTATCCCCGCTGGCGCGGGGAACAC	TATGCGCTTGCTGCTGCGTTGATGTACGCGGCC
GGTTTATCCCCGCTGGCGCGGGGAACAC	TTAACTACCTGAACACCGGGAAGACTCCGGACC
GGTTTATCCCCGCTGGCGCGGGGAACAC	GATTCAATGTCCGACGCATCCAAGTAAATATTC
GGTTTATCCCCGCTGGCGCGGGGAACAC	GGATGAGCAGGGAGCAACAAAAGTAGCCGGAAT
GGTTTATCCCCGCTGGCGCGGGGAACAC	CCATACATTAACACGGTGTGGCCACATTTCAAC
GGTTTATCCCCGCTGGCGCGGGGAACAC	GCGCGGCCGCGATATCGTTAGCACTGGCTCCCGC
GGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAACACCTGAACGTTGAGATAGGGCTAAATC
GGTTTATCCCCGCTGGCGCGGGGAACAC	AGGTTAAAGAGGCGCGCCGGGCGCTGGCTGGGC
GGTTTATCCCCGCTGGCGCGGGGAACAC	ATCCGTTAATTATTGAGAGAGCTATCAGCTATC
GGTTTATCCCCGCTGGCGCGGGGAACAC	TCTAATTGCGCTTTGATAAATGGAGTTAAAGCC
GGTTTATCCCCGCTGGCGCGGGGAACAC	GAATTCGGAATCACATTAAAAGGGAACCCGATA
GGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGGTCCCATTTGTCGATCGGCAGCGCCATTC
GGTTTATCCCCGCTGGCGCGGGGAACAC	TGTTAATTCAGCAAGTTGAGATTGTGTCAGTCC
GGTTTATCCCCGCTGGCGCGGGGAACAC	AAGAGAACAGCTTATATCTGATGCCGGTTTGCC
GGTTTATCCCCGCTGGCGCGGGGAACAC	ACACCGGCGAGATCGTATTTTTTGCCGCTGAGC
GGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009859.1\|WP_000147668.1\|3199164_3200574_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP009859.1\|WP_023908985.1\|3197550_3198411_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP009859.1\|WP_000581937.1\|3214456_3214705_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP009859.1\|WP_001164562.1\|3203223_3204501_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP009859.1\|WP_000210878.1\|3211393_3213031_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP009859.1\|WP_022646042.1\|3195289_3196561_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP009859.1\|WP_022646046.1\|3204527_3206006_+\|kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP009859.1\|WP_001199973.1\|3208111_3208783_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP009859.1\|WP_022646045.1\|3200595_3202050_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP009859.1\|WP_022646044.1\|3198407_3199187_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP009859.1\|WP_000109537.1\|3196551_3196812_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP009859.1\|WP_001130256.1\|3196828_3197404_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP009859.1\|WP_000046818.1\|3217064_3218366_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP009859.1\|WP_000254750.1\|3214121_3214457_-\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP009859.1\|WP_000186450.1\|3218422_3221179_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP009859.1\|WP_000021342.1\|3202119_3202905_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP009859.1\|WP_001071641.1\|3213258_3214050_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP009859.1\|WP_022646048.1\|3209076_3209949_+\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP009859.1\|WP_000036723.1\|3210008_3211307_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP009859.1\|WP_000226815.1\|3214782_3217017_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797

Protein	Function_ID	Function_description	E-value
NZ_CP009859.1\|WP_000147668.1\|3199164_3200574_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.9507e-51
NZ_CP009859.1\|WP_023908985.1\|3197550_3198411_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	2.43837e-88
NZ_CP009859.1\|WP_000581937.1\|3214456_3214705_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP009859.1\|WP_001164562.1\|3203223_3204501_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.87501e-29
NZ_CP009859.1\|WP_000210878.1\|3211393_3213031_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP009859.1\|WP_022646042.1\|3195289_3196561_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	3.94463e-124
NZ_CP009859.1\|WP_022646046.1\|3204527_3206006_+\|kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	8.58462e-109
NZ_CP009859.1\|WP_001199973.1\|3208111_3208783_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_CP009859.1\|WP_022646045.1\|3200595_3202050_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.79726e-81
NZ_CP009859.1\|WP_022646044.1\|3198407_3199187_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	4.70543e-60
NZ_CP009859.1\|WP_000109537.1\|3196551_3196812_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	3.07968e-40
NZ_CP009859.1\|WP_001130256.1\|3196828_3197404_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	1.33799e-87
NZ_CP009859.1\|WP_000046818.1\|3217064_3218366_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP009859.1\|WP_000254750.1\|3214121_3214457_-\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.22533e-74
NZ_CP009859.1\|WP_000186450.1\|3218422_3221179_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP009859.1\|WP_000021342.1\|3202119_3202905_-\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	8.62537e-140
NZ_CP009859.1\|WP_001071641.1\|3213258_3214050_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	6.52379e-160
NZ_CP009859.1\|WP_022646048.1\|3209076_3209949_+\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	2.57168e-95
NZ_CP009859.1\|WP_000036723.1\|3210008_3211307_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP009859.1\|WP_000226815.1\|3214782_3217017_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0

>NZ_CP009859.1|WP_022646046.1|3204527_3206006_+|kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKTWAWSEDAAVMEKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNEDSIQSWSNA
>NZ_CP009859.1|WP_001164562.1|3203223_3204501_+|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSIIGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALAMVIIFTFLLFQKIRTADSAPAMASSK
>NZ_CP009859.1|WP_000021342.1|3202119_3202905_-|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANVFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP009859.1|WP_022646045.1|3200595_3202050_-|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDVEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNHLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWTLLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP009859.1|WP_000147668.1|3199164_3200574_-|MFS-transporter
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYLGPHVLLGDEVAAATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQATLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP009859.1|WP_022646044.1|3198407_3199187_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNIGPDVSLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEDAVLLETVADLRFAPEFVARHIAEWQRQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTENGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAAIIRKTVAVELPAMQCLHLARAEQRRGATLIDGQTVAEKAQKLWQNYLRQRMQP
>NZ_CP009859.1|WP_023908985.1|3197550_3198411_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTDKRPLCLSLARQAGADKNATLPSGMQQLNIVPGALPDWLVSLENLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVCNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEAMVTNIHADCQ
>NZ_CP009859.1|WP_001130256.1|3196828_3197404_+|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISHIVKKIKSAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP009859.1|WP_000109537.1|3196551_3196812_+|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTVQWLINACPAGLFSLTPEGDLRIDYRSCLECGTCRLLCDEKTLQQWRYPPSGFGITYRFG
>NZ_CP009859.1|WP_022646042.1|3195289_3196561_+|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTQALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRACYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLLGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL
>NZ_CP009859.1|WP_001199973.1|3208111_3208783_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP009859.1|WP_022646048.1|3209076_3209949_+|YgcG-family-protein
MRYFILIFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTRKLESIFNNTQVQIAVLIIPTTKDETIEQYATRVFNNWRLGDAKRNDGILIIVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAKGLELAIIALNNQLTSQHQYSANPSESESASSSDYYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSSVCISAIYLLDLFLFSDKTFSIAVFFFFFTFTTIMVFTCLCVLQKKASGRSYHSDNSGSGGGSSGGGFSGGGGSSGGGGASGRW
>NZ_CP009859.1|WP_000036723.1|3210008_3211307_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP009859.1|WP_000210878.1|3211393_3213031_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP009859.1|WP_001071641.1|3213258_3214050_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEAQQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP009859.1|WP_000254750.1|3214121_3214457_-|endoribonuclease-MazF
MVSRYVPDTGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP009859.1|WP_000581937.1|3214456_3214705_-|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP009859.1|WP_000226815.1|3214782_3217017_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP009859.1|WP_000046818.1|3217064_3218366_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLECFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLHNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_CP009859.1|WP_000186450.1|3218422_3221179_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG

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Crispr_ID: NZ_CP009859_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009859_4

5276183-5276347

Orphan

Consensus_repeat	Method
CTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009859_4

>merge|NZ_CP009859|4|5276183-5276347|CRISPRCasFinder
CTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTTGGGTGCAGATGCCAGATGCGACGCGGGCGCGCCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTGGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGG

>NZ_CP009859|4|4|5276183-5276347|CRISPRCasFinder
CTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGG	TATTTGGGTGCAGATGCCAGATGCGACGCGGGCGCGCCTTATCTGGCCTACGAAGGG
CTAACGTGCAGGTTTGGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009859.1\|WP_001272335.1\|5276440_5277472_-\|16S-rRNA-(guanine(1207)-N(2))-methyltransferase-RsmC	unknown	unknown	gnl\|CDD\|181902
NZ_CP009859.1\|WP_001292674.1\|5266810_5269102_-\|phosphatidylglycerol--membrane-oligosaccharide-glycerophosphotransferase	unknown	unknown	gnl\|CDD\|179648
NZ_CP009859.1\|WP_001088430.1\|5284254_5285118_-\|YjjW-family-glycine-radical-enzyme-activase	unknown	unknown	gnl\|CDD\|274938
NZ_CP009859.1\|WP_000098815.1\|5270638_5271178_-\|primosomal-protein-DnaT	unknown	unknown	gnl\|CDD\|179484
NZ_CP009859.1\|WP_000936635.1\|5273137_5273863_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP009859.1\|WP_038432251.1\|5283253_5284036_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|171118
NZ_CP009859.1\|WP_000204018.1\|5277574_5277988_+\|DNA-polymerase-III-subunit-psi	unknown	unknown	gnl\|CDD\|180735
NZ_CP009859.1\|WP_000538191.1\|5271284_5271758_-\|threonine/serine-exporter	unknown	unknown	gnl\|CDD\|182143
NZ_CP009859.1\|WP_001305619.1\|5269355_5269850_-\|DUF2501-domain-containing-protein	unknown	unknown	gnl\|CDD\|236951
NZ_CP009859.1\|WP_000175943.1\|5279185_5280775_+\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NZ_CP009859.1\|WP_038432249.1\|5278417_5279095_+\|pyrimidine-5'-nucleotidase	unknown	unknown	gnl\|CDD\|181865
NZ_CP009859.1\|WP_001295748.1\|5281167_5281773_+\|molecular-chaperone-OsmY	unknown	unknown	gnl\|CDD\|182556
NZ_CP009859.1\|WP_000490275.1\|5281901_5282063_+\|DUF1328-domain-containing-protein	unknown	unknown	gnl\|CDD\|227774
NZ_CP009859.1\|WP_001309201.1\|5273820_5274498_+\|DNA-binding-transcriptional-activator-BglJ	unknown	unknown	gnl\|CDD\|236915
NZ_CP009859.1\|WP_000531528.1\|5282183_5283257_+\|patatin-family-protein	unknown	unknown	gnl\|CDD\|227013
NZ_CP009859.1\|WP_001422893.1\|5275464_5275701_+\|DUF1435-domain-containing-protein	unknown	unknown	gnl\|CDD\|369291
NZ_CP009859.1\|WP_000331576.1\|5274535_5275324_-\|siderophore-iron-reductase-FhuF	unknown	unknown	gnl\|CDD\|182616
NZ_CP009859.1\|WP_000799911.1\|5269898_5270636_-\|DNA-replication-protein-DnaC	unknown	unknown	gnl\|CDD\|181180
NZ_CP009859.1\|WP_001092461.1\|5277956_5278403_+\|ribosomal-protein-S18-alanine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|181904
NZ_CP009859.1\|WP_001376704.1\|5271748_5272519_-\|threonine/serine-exporter-ThrE-family-protein	unknown	unknown	gnl\|CDD\|225514

Protein	Function_ID	Function_description	E-value
NZ_CP009859.1\|WP_001272335.1\|5276440_5277472_-\|16S-rRNA-(guanine(1207)-N(2))-methyltransferase-RsmC	gnl\|CDD\|181902	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC.	0
NZ_CP009859.1\|WP_001292674.1\|5266810_5269102_-\|phosphatidylglycerol--membrane-oligosaccharide-glycerophosphotransferase	gnl\|CDD\|179648	PRK03776, PRK03776, phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase.	0
NZ_CP009859.1\|WP_001088430.1\|5284254_5285118_-\|YjjW-family-glycine-radical-enzyme-activase	gnl\|CDD\|274938	TIGR04041, glycine_radical_enzyme_activase_YjjW_family, glycine radical enzyme activase, YjjW family. Members of this family are radical SAM enzymes, designated YjjW in E. coli, that are paired with and appear to activate a glycyl radical enzyme of unknown function, designated YjjI. This activase and its target are found in Clostridial species as well as E. coli and cousins. Members of this family may be misannotated as pyruvate formate lyase activating enzyme. [Protein fate, Protein modification and repair].	6.64188e-163
NZ_CP009859.1\|WP_000098815.1\|5270638_5271178_-\|primosomal-protein-DnaT	gnl\|CDD\|179484	PRK02854, PRK02854, primosomal protein DnaT.	6.32406e-124
NZ_CP009859.1\|WP_000936635.1\|5273137_5273863_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	7.97362e-26
NZ_CP009859.1\|WP_038432251.1\|5283253_5284036_+\|metal-dependent-hydrolase	gnl\|CDD\|171118	PRK11449, PRK11449, metal-dependent hydrolase.	1.07009e-178
NZ_CP009859.1\|WP_000204018.1\|5277574_5277988_+\|DNA-polymerase-III-subunit-psi	gnl\|CDD\|180735	PRK06856, PRK06856, DNA polymerase III subunit psi; Validated.	5.48557e-70
NZ_CP009859.1\|WP_000538191.1\|5271284_5271758_-\|threonine/serine-exporter	gnl\|CDD\|182143	PRK09917, PRK09917, threonine/serine exporter.	4.73594e-99
NZ_CP009859.1\|WP_001305619.1\|5269355_5269850_-\|DUF2501-domain-containing-protein	gnl\|CDD\|236951	PRK11667, PRK11667, hypothetical protein; Provisional.	4.66508e-71
NZ_CP009859.1\|WP_000175943.1\|5279185_5280775_+\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NZ_CP009859.1\|WP_038432249.1\|5278417_5279095_+\|pyrimidine-5'-nucleotidase	gnl\|CDD\|181865	PRK09449, PRK09449, dUMP phosphatase; Provisional.	2.09916e-172
NZ_CP009859.1\|WP_001295748.1\|5281167_5281773_+\|molecular-chaperone-OsmY	gnl\|CDD\|182556	PRK10568, PRK10568, molecular chaperone OsmY.	4.36119e-102
NZ_CP009859.1\|WP_000490275.1\|5281901_5282063_+\|DUF1328-domain-containing-protein	gnl\|CDD\|227774	COG5487, COG5487, Small integral membrane protein [Function unknown].	4.97087e-08
NZ_CP009859.1\|WP_001309201.1\|5273820_5274498_+\|DNA-binding-transcriptional-activator-BglJ	gnl\|CDD\|236915	PRK11475, PRK11475, DNA-binding transcriptional activator BglJ; Provisional.	8.38273e-127
NZ_CP009859.1\|WP_000531528.1\|5282183_5283257_+\|patatin-family-protein	gnl\|CDD\|227013	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only].	9.75567e-168
NZ_CP009859.1\|WP_001422893.1\|5275464_5275701_+\|DUF1435-domain-containing-protein	gnl\|CDD\|369291	pfam07256, DUF1435, Protein of unknown function (DUF1435). This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.	1.64081e-26
NZ_CP009859.1\|WP_000331576.1\|5274535_5275324_-\|siderophore-iron-reductase-FhuF	gnl\|CDD\|182616	PRK10647, PRK10647, ferric iron reductase involved in ferric hydroximate transport; Provisional.	4.21041e-176
NZ_CP009859.1\|WP_000799911.1\|5269898_5270636_-\|DNA-replication-protein-DnaC	gnl\|CDD\|181180	PRK07952, PRK07952, DNA replication protein DnaC; Validated.	2.89557e-176
NZ_CP009859.1\|WP_001092461.1\|5277956_5278403_+\|ribosomal-protein-S18-alanine-N-acetyltransferase	gnl\|CDD\|181904	PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase; Provisional.	1.40837e-111
NZ_CP009859.1\|WP_001376704.1\|5271748_5272519_-\|threonine/serine-exporter-ThrE-family-protein	gnl\|CDD\|225514	COG2966, COG2966, Uncharacterized conserved protein [Function unknown].	3.2051e-97

>NZ_CP009859.1|WP_001422893.1|5275464_5275701_+|DUF1435-domain-containing-protein
MLQRTLGSGWGVLLPGLLIAGLMYADLSPDQWRIVILMGLILTPVMLYHKQLRHYVLLPSCLALIAGIMLMIMNLNQG
>NZ_CP009859.1|WP_000331576.1|5274535_5275324_-|siderophore-iron-reductase-FhuF
MAYRSAPLYEDVIWRTHLQPQDAGLAQAIRATIAEHREHLLEFIRLDEPAPLNAMTLAQWSSTNALSSLLVVYSDHIYRNQPTMIRENKPLISLWAQWYIGLMVPPLMLALLTQEKALDVSPEHFHVEFHETGRAACFWVDVCEDKNATLHSPQQRMETLISQALVPVVQALEATGEINGKLIWSNTGYLINWYLTEMKQLLGEATVESLRHALFFEKMLTNGEDNPLWRTVVLRDGLLVRRTCCQRYRLPDVQQCGDCMLK
>NZ_CP009859.1|WP_001309201.1|5273820_5274498_+|DNA-binding-transcriptional-activator-BglJ
MEHSRIKKRNVALIEKCVMSSIGIESLFRKFAGNPYKLHTYTSQESFQDAMSRISFAAVIFSFSAMRGERREGLSCLTELAIKFPRTRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEIFHQELFLSLNGVRQATDRLNNQWYINQSRTLSPTEREILRFMSRGYSMTQIAEQLKRNIKTIRAHKFNVMSKLGVSSDAGLLEAADILLCMRHCEASNVLHPY
>NZ_CP009859.1|WP_000936635.1|5273137_5273863_+|response-regulator-transcription-factor
MLPGCCKNGIVISKIPVMQAGLKEVMRTHFPEYEIISSASAEDLTLLQLRRSGLVIADLAGESEDPRSVCEHYYSLISQYREIHWVFMVSRSWYSQAVELLMCPTATLLSDVEPIENLVKTVRSGNTHAERISAMLTSPAMTETHDFSYRSVILTLSERKVLRLLGKGWGINQIASLLKKSNKTISAQKNSAMRRLAIHSNAEMYAWINSAQGARELNLPSVYGDAAEWNTAELRREMSHS
>NZ_CP009859.1|WP_001376704.1|5271748_5272519_-|threonine/serine-exporter-ThrE-family-protein
MQTEQQRAVTRLCIQCGLFLLQHGAESALVDELSSRLGRALGMDSVESSISSNAIVLTTIKDGQCLTSTRKNQDRGINMHVVTEVQHIVILAEHHLLDYKGVEKRFSQIQPLRYPRWLVALMVGLSCACFCKLNKGGWDGAVITFFASTVAMYIRQLLAQRHLHPQINFCLTAFAATTISGLLLQLPTFSNTPTIAMAASVLLLVPGFPLINAVADMFKGHINTGLARWAIASLLTLATCVGVVMALTIWGLRGWV
>NZ_CP009859.1|WP_000538191.1|5271284_5271758_-|threonine/serine-exporter
MGVIEFLLALAQDMILAAIPAVGFAMVFNVPVRALRWCALLGSIGHGSRMILMTSGLNIEWSTFMASMLVGTIGIQWSRWYLAHPKVFTVAAVIPMFPGISAYTAMISAVKISQLGYSEPLMITLLTNFLTASSIVGALSIGLSIPGLWLYRKRPRV
>NZ_CP009859.1|WP_000098815.1|5270638_5271178_-|primosomal-protein-DnaT
MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALRAPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDSQIPPGFRG
>NZ_CP009859.1|WP_000799911.1|5269898_5270636_-|DNA-replication-protein-DnaC
MKNVGDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGAIRSAALERENRAMKMQRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSGTSEEQLLNDLSNVDLLVIDEIGVQTESKYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDSYRSRVTGKEY
>NZ_CP009859.1|WP_001305619.1|5269355_5269850_-|DUF2501-domain-containing-protein
MMKTVKHLLCCAIAASALISTGAHAASWKDALSSAASELGNQNNTTQEGGWSLASLTNLLSSGNQALSADNMNNAAGILQYCAKQKLASVTDAENIKNQVLEKLGLNSEEQKEDTNYLDGIQGLLKTKDGQQLNLDNIGTTPLAEKVKTKACDLVLKQGLNFIS
>NZ_CP009859.1|WP_001292674.1|5266810_5269102_-|phosphatidylglycerol--membrane-oligosaccharide-glycerophosphotransferase
MSELLSFALFLASVLIYAWKAGRNTWWFAATLTVLGLFVVLNITLFASDYFTGDGINDAVLYTLTNSLTGAGVSKYILPGIGIVLGLTAVFGALGWILRRRRHHPHHFGYSLLALLLALGSVDASPAFRQITELVKSQSRDGDPDFAAYYKEPSKTIPDPKLNLVYIYGESLERTYFDNEAFPDLTPELGALKNEGLDFSHTQQLPGTDYTIAGMVASQCGIPLFAPFEGNASASVSSFFPQNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKSHGFDHLYGSEELKSVVADPHYRNDWGFYDDTVLDEAWKKFEELSRSGQRFSLFTLTVDTHHPDGFISRTCNRKKYDFDGKPNQSFSAVSCSQENIATFINKIKASPWFKDTVIVVSSDHLAMNNTAWKYLNKQDRNNLFFVIRGDKPQQETLAVKRNTMDNGATVLDILGGDNYLGLGRSSLSGQSMSEIFLNIKEKTLAWKPDIIRLWKFPKEMKEFTIDQQKNMIAFSGSHFRLPLLLRVSDKRVEPLPESEYSAPLRFQLADFAPRDNFVWVDRCYKMAQLWAPELALSTDWCVSQGQLGGQQIVQHVDKTTWKGKTAFKDTVIDMARYKGNVDTLKIVDNDIRYKADSFIFNVAGAPEEVKQFSGISRPESWGRWSNAQLGDEVKIEYKHPLPKKFDLVITAKAYGNNASRPIPVRVGNEEQTLVLGNEVTTTTLHFDNPTDADTLVIVPPEPVSTNEGNILGHSPRKLGIGMVEIKVVEREG
>NZ_CP009859.1|WP_001272335.1|5276440_5277472_-|16S-rRNA-(guanine(1207)-N(2))-methyltransferase-RsmC
MSAFTPASEVLLRHSDDFEQSRILFAGDLQDDLPARLDTAASRAHTQQFHHWQVLSRQMGDNARFSLVATADDVADCNTLIYYWPKNKPEAQFQLMNLLSLLPVGTDIFVVGENRSGVRSAEQMLADYAPLNKVDSARRCGLYFGRLEKQPEFDADKFWGEYSVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGFHEVIAQTGRFKVYRAIMTRQAKKG
>NZ_CP009859.1|WP_000204018.1|5277574_5277988_+|DNA-polymerase-III-subunit-psi
MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALTVSPDQVLQLTPEKIAMLPQGSRCNSWRLGTDEPLSLEGAQVASPALTELRANPTARAALWQQICTYEHDFFPRND
>NZ_CP009859.1|WP_001092461.1|5277956_5278403_+|ribosomal-protein-S18-alanine-N-acetyltransferase
MNTISSLETTDLPAAYHIEQRAHAFPWSEKTFASNQGERYLNFQLTQNGKMAAFAITQVVLDEATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEATIRRNYYPTTDGREDAIIMALPISM
>NZ_CP009859.1|WP_038432249.1|5278417_5279095_+|pyrimidine-5'-nucleotidase
MKWDWIFFDADETLFTFDSFTGLQRMFLDYSVTFTAEDFQDYQAVNKPLWVDYQNGAITSLQLQHGRFESWAERLNVEPGKLNEAFINAMAEICTPLPGAVSLLNAIRGNAKIGIITNGFSALQQVRLERTGLRDYFDLLVISEEVGVAKPNKKIFDYALEQAGNPDRSRVLMVGDTAESDILGGINAGLATCWLNAHNREQPEGIAPTLTVSSLHELEQLLCKH
>NZ_CP009859.1|WP_000175943.1|5279185_5280775_+|peptide-chain-release-factor-3
MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVVSRLKSEYNVEAVYESVNVATARWVECADAKKFEEFKRKNESQLALDGGDNLAYIATSMVNLRLAQERYPDVQFHQTREH
>NZ_CP009859.1|WP_001295748.1|5281167_5281773_+|molecular-chaperone-OsmY
MTMTRLKISKTLLAVMLTSAVATGSAYAENNAQTTNESAGQKVDSSMNKVGNFMDDSAITAKVKAALVDHDNIKSTDISVKTDQKVVTLSGFVESQAQAEEAVKVAKGVEGVTSVSDKLHVRDAKEGSVKGYAGDTATTSEIKAKLLADDIVPSRHVKVETTDGVVQLSGTVDSQAQSDRAESIAKAVDGVKSVKNDLKTK
>NZ_CP009859.1|WP_000490275.1|5281901_5282063_+|DUF1328-domain-containing-protein
MFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIILFLVSLFMGRKRP
>NZ_CP009859.1|WP_000531528.1|5282183_5283257_+|patatin-family-protein
MGQRIPVTLGNIAPLSLRPFQPGRIALVCEGGGQRGIFTAGVLDEFMRAQFNPFDLYLGTSAGAQNLSAYICNQPGYARKVIMRYTTKREFFDPLRFVRGGNLIDLDWLVEATASQMPLQMDTAARLFDSGKSFYMCACRQDDYAPNYFLPTKQNWLDVIRASSAIPGFYRSGVSLEGINYLDGGISDAIPVKEAARQGAKTLVVIRTVPSQMYYTPQWFKRMERWLGDSSLQPLVNLVQHHETSYREIQQFIEKPPGQLRIFEIYPPKPLHSIALGSRIPALREDYKLGRLCGRYFLATVGKLLTEKAPLSRHLVPVVTPESIVIPPAPVANDTLVTEVIDAPQANDPTFNNEDLA
>NZ_CP009859.1|WP_038432251.1|5283253_5284036_+|metal-dependent-hydrolase
MICRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAANFARVQALAENYQPLYAALGLHPGMLEKHSDVSLDQLQQALGRRPTKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRQNLPRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASMLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCELRPEPADEIAEVLLNNTYAVFNVRG
>NZ_CP009859.1|WP_001088430.1|5284254_5285118_-|YjjW-family-glycine-radical-enzyme-activase
MNSRCALVSKIIPFSCVDGPGSRLALFLQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVNSKVVWNAAVCEQCDTCLKMCPQHATPMAQSMNVDEVLSHVRKAVLFIEGITVSGGEATTQLPFVVALFTAIKNDPQLCHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGGACHQQLTGRDNQQIKRSISLLAERGKLAELRLLVIPGHVDYLQHIDELAAFIKGLGDVPVRLNAFHAHGVYGEAQSWASATPEDVEQLADALREHGVSRLIFPALYL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP009859_3	3.7\|3207040\|32\|NZ_CP009859\|CRISPRCasFinder,CRT	3207040-3207071	32	NZ_CP009859.1	3227573-3227604	1	0.969
NZ_CP009859_3	3.25\|3207040\|33\|NZ_CP009859\|PILER-CR	3207040-3207072	33	NZ_CP009859.1	3227572-3227604	1	0.97

1. spacer 3.7|3207040|32|NZ_CP009859|CRISPRCasFinder,CRT matches to position: 3227573-3227604, mismatch: 1, identity: 0.969

ggatgagcagggagcaacaaaagtagccggaa	CRISPR spacer
ggatgagcagggagcaacaaaagtagctggaa	Protospacer
***************************.****

2. spacer 3.25|3207040|33|NZ_CP009859|PILER-CR matches to position: 3227572-3227604, mismatch: 1, identity: 0.97

ggatgagcagggagcaacaaaagtagccggaat	CRISPR spacer
ggatgagcagggagcaacaaaagtagctggaat	Protospacer
***************************.*****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009859_2	2.1\|3180243\|32\|NZ_CP009859\|CRT	3180243-3180274	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246937-246968	3	0.906
NZ_CP009859_2	2.5\|3180488\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180488-3180519	32	MF547662	Clostridioides phage LIBA6276, complete genome	37369-37400	4	0.875
NZ_CP009859_2	2.5\|3180488\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180488-3180519	32	MF547663	Clostridioides phage LIBA2945, complete genome	37369-37400	4	0.875
NZ_CP009859_2	2.5\|3180488\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180488-3180519	32	NZ_CP029155	Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence	83504-83535	5	0.844
NZ_CP009859_2	2.13\|3180976\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180976-3181007	32	MK972713	Salmonella phage SW5, complete genome	27687-27718	5	0.844
NZ_CP009859_2	2.13\|3180976\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180976-3181007	32	MK972714	Salmonella phage SW3, complete genome	27909-27940	5	0.844
NZ_CP009859_2	2.13\|3180976\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180976-3181007	32	NC_049460	Salmonella phage SI7, complete genome	18129-18160	5	0.844
NZ_CP009859_2	2.12\|3180915\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180915-3180946	32	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	1203814-1203845	6	0.812
NZ_CP009859_2	2.12\|3180915\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180915-3180946	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	1167510-1167541	6	0.812
NZ_CP009859_2	2.1\|3180243\|32\|NZ_CP009859\|CRT	3180243-3180274	32	NZ_CP015038	Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence	112768-112799	7	0.781
NZ_CP009859_2	2.12\|3180915\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180915-3180946	32	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1175642-1175673	7	0.781
NZ_CP009859_2	2.14\|3181037\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3181037-3181068	32	LR597649	Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1	17850-17881	7	0.781
NZ_CP009859_2	2.14\|3181037\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3181037-3181068	32	NC_049393	Escherichia phage ESSI2_ev040 genome assembly, chromosome: 1	17628-17659	7	0.781
NZ_CP009859_2	2.14\|3181037\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3181037-3181068	32	NC_049394	Escherichia phage ESSI2_ev129 genome assembly, chromosome: 1	17890-17921	7	0.781
NZ_CP009859_3	3.15\|3207529\|32\|NZ_CP009859\|CRISPRCasFinder,CRT	3207529-3207560	32	NC_018022	Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence	373536-373567	7	0.781
NZ_CP009859_2	2.1\|3180243\|32\|NZ_CP009859\|CRT	3180243-3180274	32	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	1428097-1428128	8	0.75
NZ_CP009859_2	2.7\|3180610\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180610-3180641	32	NZ_CP008818	Ochrobactrum anthropi strain OAB plasmid 2, complete sequence	52227-52258	8	0.75
NZ_CP009859_2	2.7\|3180610\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180610-3180641	32	NC_009671	Ochrobactrum anthropi ATCC 49188 plasmid pOANT03, complete sequence	23638-23669	8	0.75
NZ_CP009859_2	2.9\|3180732\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180732-3180763	32	MN694482	Marine virus AFVG_250M11, complete genome	1728-1759	8	0.75
NZ_CP009859_2	2.10\|3180793\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180793-3180824	32	NZ_CP024236	Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence	57083-57114	8	0.75
NZ_CP009859_2	2.11\|3180854\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180854-3180885	32	CP022610	Escherichia coli strain ATCC 700415 plasmid unnamed, complete sequence	10541-10572	8	0.75
NZ_CP009859_2	2.12\|3180915\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180915-3180946	32	NC_031109	Gordonia phage Jumbo, complete genome	25391-25422	8	0.75
NZ_CP009859_2	2.12\|3180915\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180915-3180946	32	NZ_CP050093	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence	398774-398805	8	0.75
NZ_CP009859_2	2.12\|3180915\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180915-3180946	32	NC_008384	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence	565533-565564	8	0.75
NZ_CP009859_2	2.12\|3180915\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180915-3180946	32	NZ_CP042332	Bosea sp. F3-2 plasmid pB32-1, complete sequence	63515-63546	8	0.75
NZ_CP009859_2	2.12\|3180915\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180915-3180946	32	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	350647-350678	8	0.75
NZ_CP009859_3	3.4\|3206857\|32\|NZ_CP009859\|CRISPRCasFinder,CRT	3206857-3206888	32	MN855615	Siphoviridae sp. isolate 320, complete genome	7076-7107	8	0.75
NZ_CP009859_3	3.4\|3206857\|32\|NZ_CP009859\|CRISPRCasFinder,CRT	3206857-3206888	32	NC_034248	Rhizobium phage RHEph10, complete genome	31444-31475	8	0.75
NZ_CP009859_3	3.9\|3207162\|33\|NZ_CP009859\|CRISPRCasFinder,CRT	3207162-3207194	33	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	413541-413573	8	0.758
NZ_CP009859_3	3.11\|3207285\|32\|NZ_CP009859\|CRISPRCasFinder,CRT	3207285-3207316	32	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	405764-405795	8	0.75
NZ_CP009859_3	3.11\|3207285\|32\|NZ_CP009859\|CRISPRCasFinder,CRT	3207285-3207316	32	NZ_CP053710	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence	354033-354064	8	0.75
NZ_CP009859_3	3.11\|3207285\|32\|NZ_CP009859\|CRISPRCasFinder,CRT	3207285-3207316	32	NZ_CP053712	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence	91487-91518	8	0.75
NZ_CP009859_1	1.2\|1029729\|32\|NZ_CP009859\|CRISPRCasFinder	1029729-1029760	32	NZ_CP045060	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence	9736-9767	9	0.719
NZ_CP009859_1	1.2\|1029729\|32\|NZ_CP009859\|CRISPRCasFinder	1029729-1029760	32	NZ_CP045053	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence	9737-9768	9	0.719
NZ_CP009859_1	1.2\|1029729\|32\|NZ_CP009859\|CRISPRCasFinder	1029729-1029760	32	NZ_CP045057	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence	9736-9767	9	0.719
NZ_CP009859_2	2.1\|3180243\|32\|NZ_CP009859\|CRT	3180243-3180274	32	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	141278-141309	9	0.719
NZ_CP009859_2	2.5\|3180488\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180488-3180519	32	MN693584	Marine virus AFVG_25M163, complete genome	29591-29622	9	0.719
NZ_CP009859_2	2.5\|3180488\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180488-3180519	32	MN103543	Pseudomonas phage vB_PaeM_PS119XW, complete genome	258501-258532	9	0.719
NZ_CP009859_2	2.5\|3180488\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180488-3180519	32	MK599315	Pseudomonas phage PA1C, complete genome	257887-257918	9	0.719
NZ_CP009859_2	2.6\|3180549\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180549-3180580	32	MN812211	Flavobacterium phage vB_FspS_laban6-1, complete genome	21752-21783	9	0.719
NZ_CP009859_2	2.6\|3180549\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180549-3180580	32	NZ_CP012534	Psychrobacter sp. P11G5 plasmid pPspP11G5a, complete sequence	26937-26968	9	0.719
NZ_CP009859_2	2.8\|3180671\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180671-3180702	32	MT446414	UNVERIFIED: Escherichia virus TH43, complete genome	38100-38131	9	0.719
NZ_CP009859_2	2.10\|3180793\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180793-3180824	32	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	137043-137074	9	0.719
NZ_CP009859_2	2.12\|3180915\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180915-3180946	32	NZ_CP017077	Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence	555186-555217	9	0.719
NZ_CP009859_2	2.12\|3180915\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180915-3180946	32	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	471692-471723	9	0.719
NZ_CP009859_3	3.2\|3206735\|32\|NZ_CP009859\|CRISPRCasFinder,CRT	3206735-3206766	32	MK448690	Streptococcus phage Javan169, complete genome	9831-9862	9	0.719
NZ_CP009859_3	3.2\|3206735\|32\|NZ_CP009859\|CRISPRCasFinder,CRT	3206735-3206766	32	MK448854	Streptococcus phage Javan146, complete genome	11811-11842	9	0.719
NZ_CP009859_3	3.6\|3206979\|32\|NZ_CP009859\|CRISPRCasFinder,CRT	3206979-3207010	32	NZ_CP016721	Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11B, complete sequence	30466-30497	9	0.719
NZ_CP009859_3	3.6\|3206979\|32\|NZ_CP009859\|CRISPRCasFinder,CRT	3206979-3207010	32	NZ_CP016727	Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08B, complete sequence	30464-30495	9	0.719
NZ_CP009859_3	3.11\|3207285\|32\|NZ_CP009859\|CRISPRCasFinder,CRT	3207285-3207316	32	JX469828	Uncultured bacterium plasmid pRSB223, complete sequence	47585-47616	9	0.719
NZ_CP009859_3	3.11\|3207285\|32\|NZ_CP009859\|CRISPRCasFinder,CRT	3207285-3207316	32	JX469829	Uncultured bacterium plasmid pB1, complete sequence	23183-23214	9	0.719
NZ_CP009859_3	3.11\|3207285\|32\|NZ_CP009859\|CRISPRCasFinder,CRT	3207285-3207316	32	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	393203-393234	9	0.719
NZ_CP009859_3	3.11\|3207285\|32\|NZ_CP009859\|CRISPRCasFinder,CRT	3207285-3207316	32	NC_008766	Acidovorax sp. JS42 plasmid pAOVO02, complete sequence	3158-3189	9	0.719
NZ_CP009859_3	3.11\|3207285\|32\|NZ_CP009859\|CRISPRCasFinder,CRT	3207285-3207316	32	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	569059-569090	9	0.719
NZ_CP009859_3	3.11\|3207285\|32\|NZ_CP009859\|CRISPRCasFinder,CRT	3207285-3207316	32	NZ_MN366361	Bacterium plasmid pALTS33, complete sequence	54575-54606	9	0.719
NZ_CP009859_3	3.22\|3206857\|33\|NZ_CP009859\|PILER-CR	3206857-3206889	33	MN855615	Siphoviridae sp. isolate 320, complete genome	7075-7107	9	0.727
NZ_CP009859_3	3.27\|3207162\|34\|NZ_CP009859\|PILER-CR	3207162-3207195	34	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	413540-413573	9	0.735
NZ_CP009859_2	2.6\|3180549\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180549-3180580	32	NZ_KX711616	Bacillus subtilis strain 72 plasmid pBS72, complete sequence	1474-1505	10	0.688
NZ_CP009859_3	3.11\|3207285\|32\|NZ_CP009859\|CRISPRCasFinder,CRT	3207285-3207316	32	NC_004929	Ruegeria sp. PR1b plasmid pSD20, complete sequence	67373-67404	10	0.688
NZ_CP009859_2	2.6\|3180549\|32\|NZ_CP009859\|CRT,CRISPRCasFinder,PILER-CR	3180549-3180580	32	NC_023026	Francisella novicida strain PA10-7858 plasmid pFNPA10, complete sequence	2981-3012	11	0.656

1. spacer 2.1|3180243|32|NZ_CP009859|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 3, identity: 0.906

taagtgatatccatcatcgcatccagtgcgcc	CRISPR spacer
caagtgatgtccatcatcgcatccagtgcgtc	Protospacer
.*******.*********************.*

2. spacer 2.5|3180488|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 4, identity: 0.875

-tatataaacgaggtgaatttatggaaactgta	CRISPR spacer
ttttataag-gaggtgaatttatggaaacagta	Protospacer
 * *****. ******************* ***

3. spacer 2.5|3180488|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 4, identity: 0.875

-tatataaacgaggtgaatttatggaaactgta	CRISPR spacer
ttttataag-gaggtgaatttatggaaacagta	Protospacer
 * *****. ******************* ***

4. spacer 2.5|3180488|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.844

-tatataaacgaggtgaatttatggaaactgta	CRISPR spacer
ttttatagg-gaggtgaatttatggaaacagta	Protospacer
 * ****.. ******************* ***

5. spacer 2.13|3180976|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to MK972713 (Salmonella phage SW5, complete genome) position: , mismatch: 5, identity: 0.844

ttctgcgtccccgatgtctggcccgactggtc	CRISPR spacer
ttggccgtgctcgatgtctggcccgactggtc	Protospacer
**   *** *.*********************

6. spacer 2.13|3180976|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to MK972714 (Salmonella phage SW3, complete genome) position: , mismatch: 5, identity: 0.844

ttctgcgtccccgatgtctggcccgactggtc	CRISPR spacer
ttggccgtgctcgatgtctggcccgactggtc	Protospacer
**   *** *.*********************

7. spacer 2.13|3180976|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to NC_049460 (Salmonella phage SI7, complete genome) position: , mismatch: 5, identity: 0.844

ttctgcgtccccgatgtctggcccgactggtc	CRISPR spacer
ttggccgtgctcgatgtctggcccgactggtc	Protospacer
**   *** *.*********************

8. spacer 2.12|3180915|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 6, identity: 0.812

cgacgttcgacgaaatgcgcgatggcggtcgg	CRISPR spacer
cggcgttcgacgaactgcgcgatggccgcgtg	Protospacer
**.*********** *********** *.  *

9. spacer 2.12|3180915|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 6, identity: 0.812

cgacgttcgacgaaatgcgcgatggcggtcgg	CRISPR spacer
caacgatggacgaaatgcgcgatggcgaacgc	Protospacer
*.*** * *******************. **

10. spacer 2.1|3180243|32|NZ_CP009859|CRT matches to NZ_CP015038 (Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence) position: , mismatch: 7, identity: 0.781

taagtgat-atccatcatcgcatccagtgcgcc	CRISPR spacer
-ggttgatcgtccttcatcgcagccagtgcgcc	Protospacer
 .. **** .*** ******** **********

11. spacer 2.12|3180915|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 7, identity: 0.781

cgacgttcgacgaaatgcgcgatggcggtcgg	CRISPR spacer
cagcgatggacgaaatgcgcgatggcgaacgc	Protospacer
*..** * *******************. **

12. spacer 2.14|3181037|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to LR597649 (Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

tatatgaccggaacacttccgcctgacgtttg	CRISPR spacer
tgtaagaccggaacacttcagcctgagccttt	Protospacer
*.** ************** ******  .**

13. spacer 2.14|3181037|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to NC_049393 (Escherichia phage ESSI2_ev040 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

tatatgaccggaacacttccgcctgacgtttg	CRISPR spacer
tgtaagaccggaacacttcagcctgagccttt	Protospacer
*.** ************** ******  .**

14. spacer 2.14|3181037|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to NC_049394 (Escherichia phage ESSI2_ev129 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

tatatgaccggaacacttccgcctgacgtttg	CRISPR spacer
tgtaagaccggaacacttcagcctgagccttt	Protospacer
*.** ************** ******  .**

15. spacer 3.15|3207529|32|NZ_CP009859|CRISPRCasFinder,CRT matches to NC_018022 (Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence) position: , mismatch: 7, identity: 0.781

-ccaggtcccatttgtcgatcggcagcgccatt	CRISPR spacer
agcatgt-gcatttgtccatcggcatcgccatc	Protospacer
  ** **  ******** ******* ******.

16. spacer 2.1|3180243|32|NZ_CP009859|CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.75

taagtg---atatccatcatcgcatccagtgcgcc	CRISPR spacer
---gtgcgcccctccatcaccgcttccagtgcgcc	Protospacer
   ***    . *******.*** ***********

17. spacer 2.7|3180610|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP008818 (Ochrobactrum anthropi strain OAB plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.75

aatattgtcgtggacaaatgccggtgttattg-	CRISPR spacer
aattgtgtcgtggacaaatgcc-gcgtcgccga	Protospacer
***  ***************** *.**....*

18. spacer 2.7|3180610|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to NC_009671 (Ochrobactrum anthropi ATCC 49188 plasmid pOANT03, complete sequence) position: , mismatch: 8, identity: 0.75

aatattgtcgtggacaaatgccggtgttattg-	CRISPR spacer
aattgtgtcgtggacaaatgcc-gcgtcgccga	Protospacer
***  ***************** *.**....*

19. spacer 2.9|3180732|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to MN694482 (Marine virus AFVG_250M11, complete genome) position: , mismatch: 8, identity: 0.75

caggtatcaagaaataatcgaagccttcatga	CRISPR spacer
aactaaactagaaaaaatcgaagccttaatga	Protospacer
 *   * * ***** ************ ****

20. spacer 2.10|3180793|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024236 (Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

aattgattgctgggtgatattggaaaatgttg-	CRISPR spacer
cccggagtgctgggtgatattagaaaa-gttac	Protospacer
  . ** **************.***** ***.

21. spacer 2.11|3180854|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to CP022610 (Escherichia coli strain ATCC 700415 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

taccgtacagactgccggatattatttttttg	CRISPR spacer
ctcgctaaagactgccggatatgatttttctt	Protospacer
. *  ** ************** ******.*

22. spacer 2.12|3180915|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to NC_031109 (Gordonia phage Jumbo, complete genome) position: , mismatch: 8, identity: 0.75

cgacgttcgacgaaatgcgcgatggcggtcgg	CRISPR spacer
cgacgttcgacaaaatccgcgatggtattgtc	Protospacer
***********.**** ********.. *

23. spacer 2.12|3180915|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP050093 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence) position: , mismatch: 8, identity: 0.75

cgacgttcgacgaaatgcgcgatggcggtcgg	CRISPR spacer
aggcgttcgccgaaatgcgcgatgccgtcaga	Protospacer
 *.****** ************** ** . *.

24. spacer 2.12|3180915|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to NC_008384 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence) position: , mismatch: 8, identity: 0.75

cgacgttcgacgaaatgcgcgatggcggtcgg	CRISPR spacer
aggcgttcgccgaaatgcgcgatgccgtcaga	Protospacer
 *.****** ************** ** . *.

25. spacer 2.12|3180915|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP042332 (Bosea sp. F3-2 plasmid pB32-1, complete sequence) position: , mismatch: 8, identity: 0.75

cgacgttcgacgaaatgcgcgatggcggtcgg	CRISPR spacer
aggcggtcgacgaaatgcgcgacggcgtcgtg	Protospacer
 *.** ****************.**** .  *

26. spacer 2.12|3180915|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 8, identity: 0.75

cgacgttcgacgaaatgcgcgatggcggtcgg	CRISPR spacer
ccatattcgccgaattgcgcgatggcggcggc	Protospacer
* *..**** **** *************. *

27. spacer 3.4|3206857|32|NZ_CP009859|CRISPRCasFinder,CRT matches to MN855615 (Siphoviridae sp. isolate 320, complete genome) position: , mismatch: 8, identity: 0.75

tatgcgcttgctgctgcgttgatgtacgcggc	CRISPR spacer
tatgcgcttgctggtgctttgatgggcagtgg	Protospacer
************* *** ****** .*.  *

28. spacer 3.4|3206857|32|NZ_CP009859|CRISPRCasFinder,CRT matches to NC_034248 (Rhizobium phage RHEph10, complete genome) position: , mismatch: 8, identity: 0.75

tatgcgcttgctgctgcgttgatgtacgcggc	CRISPR spacer
tctccttatgctgctgcgttgatggccgcggt	Protospacer
* * * . ****************  *****.

29. spacer 3.9|3207162|33|NZ_CP009859|CRISPRCasFinder,CRT matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 8, identity: 0.758

gcgcggccgcgatatcgttagcactggctcccg	CRISPR spacer
cggcggccgcgatatcgttcgcgctgccgcgcc	Protospacer
  ***************** **.*** * * *

30. spacer 3.11|3207285|32|NZ_CP009859|CRISPRCasFinder,CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

aggttaaagaggcgcgccgggcgctggctggg	CRISPR spacer
ggacgaagcaggcgcgcggggcgctggcgggg	Protospacer
.*.. **. ******** ********** ***

31. spacer 3.11|3207285|32|NZ_CP009859|CRISPRCasFinder,CRT matches to NZ_CP053710 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

aggttaaagaggcgcgccgggcgctggctggg	CRISPR spacer
ggacgaagcaggcgcgcggggcgctggcgggg	Protospacer
.*.. **. ******** ********** ***

32. spacer 3.11|3207285|32|NZ_CP009859|CRISPRCasFinder,CRT matches to NZ_CP053712 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.75

aggttaaagaggcgcgccgggcgctggctggg	CRISPR spacer
ggacgaagcaggcgcgcggggcgctggcgggg	Protospacer
.*.. **. ******** ********** ***

33. spacer 1.2|1029729|32|NZ_CP009859|CRISPRCasFinder matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 9, identity: 0.719

ttcactggtaacatactccacccgcccaccat	CRISPR spacer
tgtcctggtaacatgttccacccgcccggtgt	Protospacer
* . **********..***********. ..*

34. spacer 1.2|1029729|32|NZ_CP009859|CRISPRCasFinder matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 9, identity: 0.719

ttcactggtaacatactccacccgcccaccat	CRISPR spacer
tgtcctggtaacatgttccacccgcccggtgt	Protospacer
* . **********..***********. ..*

35. spacer 1.2|1029729|32|NZ_CP009859|CRISPRCasFinder matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 9, identity: 0.719

ttcactggtaacatactccacccgcccaccat	CRISPR spacer
tgtcctggtaacatgttccacccgcccggtgt	Protospacer
* . **********..***********. ..*

36. spacer 2.1|3180243|32|NZ_CP009859|CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 9, identity: 0.719

taagtgatatccatcatcgcatccagtgcgcc	CRISPR spacer
ctcatcgcatccatcatcggttccagtgcgcc	Protospacer
.  .* ..***********  ***********

37. spacer 2.5|3180488|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to MN693584 (Marine virus AFVG_25M163, complete genome) position: , mismatch: 9, identity: 0.719

tatataaacgaggtgaatttatggaaactgta	CRISPR spacer
aatataaacgaggtgagtttatagatatcccc	Protospacer
 ***************.*****.** *.. .

38. spacer 2.5|3180488|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to MN103543 (Pseudomonas phage vB_PaeM_PS119XW, complete genome) position: , mismatch: 9, identity: 0.719

tatataaacgaggtgaatttatggaaactgta	CRISPR spacer
tccataaccgaggtgaatgtatggaagaagcg	Protospacer
* .**** ********** *******.  *..

39. spacer 2.5|3180488|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to MK599315 (Pseudomonas phage PA1C, complete genome) position: , mismatch: 9, identity: 0.719

tatataaacgaggtgaatttatggaaactgta	CRISPR spacer
tccataaccgaggtgaatgtatggaagaagcg	Protospacer
* .**** ********** *******.  *..

40. spacer 2.6|3180549|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to MN812211 (Flavobacterium phage vB_FspS_laban6-1, complete genome) position: , mismatch: 9, identity: 0.719

gttagttttctgaaaaaattgttttcttacgc	CRISPR spacer
atcttttttaagaaaaaattgttttcttattt	Protospacer
.*.  ****  ******************. .

41. spacer 2.6|3180549|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP012534 (Psychrobacter sp. P11G5 plasmid pPspP11G5a, complete sequence) position: , mismatch: 9, identity: 0.719

gttagttt---tctgaaaaaattgttttcttacgc	CRISPR spacer
---catctggaactggaaaaactgttttcttacgc	Protospacer
    .*.*    ***.*****.*************

42. spacer 2.8|3180671|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to MT446414 (UNVERIFIED: Escherichia virus TH43, complete genome) position: , mismatch: 9, identity: 0.719

ttcgagacacttctctgcaaaattaatgaaat	CRISPR spacer
ataaatttccttctctgcaaagttgatgaaat	Protospacer
 * .*  . ************.**.*******

43. spacer 2.10|3180793|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

aattgattgctgggtgatattggaaaatgttg	CRISPR spacer
atttgatagctggctgatattggaaggcaatc	Protospacer
* ***** ***** ***********.... *

44. spacer 2.12|3180915|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 9, identity: 0.719

cgacgttcgacgaaatgcgcgatggcggtcgg	CRISPR spacer
ctctcagcgacgaactgcgcgatgccggtcga	Protospacer
*  .   ******* ********* ******.

45. spacer 2.12|3180915|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 9, identity: 0.719

cgacgttcgacgaaatgcgcgatggcggtcgg	CRISPR spacer
atgtgctcgaggaaatgcgcgatgccggtctc	Protospacer
  ..*.**** ************* *****

46. spacer 3.2|3206735|32|NZ_CP009859|CRISPRCasFinder,CRT matches to MK448690 (Streptococcus phage Javan169, complete genome) position: , mismatch: 9, identity: 0.719

aatatccgttcctcgctctgcgttttcgttga	CRISPR spacer
gaaatccgtttctcgctctccgttttgctctt	Protospacer
.* *******.******** ******  *.

47. spacer 3.2|3206735|32|NZ_CP009859|CRISPRCasFinder,CRT matches to MK448854 (Streptococcus phage Javan146, complete genome) position: , mismatch: 9, identity: 0.719

aatatccgttcctcgctctgcgttttcgttga	CRISPR spacer
gaaatccgtttctcgctctccgttttgctctt	Protospacer
.* *******.******** ******  *.

48. spacer 3.6|3206979|32|NZ_CP009859|CRISPRCasFinder,CRT matches to NZ_CP016721 (Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11B, complete sequence) position: , mismatch: 9, identity: 0.719

gattcaatgtccgacgcatccaagtaaatatt	CRISPR spacer
ctttcaatgtcctacgcattcaagtcatgaaa	Protospacer
  ********** ******.***** *  *

49. spacer 3.6|3206979|32|NZ_CP009859|CRISPRCasFinder,CRT matches to NZ_CP016727 (Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08B, complete sequence) position: , mismatch: 9, identity: 0.719

gattcaatgtccgacgcatccaagtaaatatt	CRISPR spacer
ctttcaatgtcctacgcattcaagtcatgaaa	Protospacer
  ********** ******.***** *  *

50. spacer 3.11|3207285|32|NZ_CP009859|CRISPRCasFinder,CRT matches to JX469828 (Uncultured bacterium plasmid pRSB223, complete sequence) position: , mismatch: 9, identity: 0.719

aggttaaagaggcgcgccgggcgctggctggg	CRISPR spacer
ccgctaaagaggcgcgcaaggcgctggaggcc	Protospacer
  *.************* .********  *

51. spacer 3.11|3207285|32|NZ_CP009859|CRISPRCasFinder,CRT matches to JX469829 (Uncultured bacterium plasmid pB1, complete sequence) position: , mismatch: 9, identity: 0.719

aggttaaagaggcgcgccgggcgctggctggg	CRISPR spacer
ccgctaaagaggcgcgcaaggcgctggaggcc	Protospacer
  *.************* .********  *

52. spacer 3.11|3207285|32|NZ_CP009859|CRISPRCasFinder,CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 9, identity: 0.719

aggttaaagaggcgcgccgggcgctggctggg	CRISPR spacer
tgatggctgaggcgcgccgggcgctgcccggc	Protospacer
 *.* .  ****************** *.**

53. spacer 3.11|3207285|32|NZ_CP009859|CRISPRCasFinder,CRT matches to NC_008766 (Acidovorax sp. JS42 plasmid pAOVO02, complete sequence) position: , mismatch: 9, identity: 0.719

aggttaaagaggcgcgccgggcgctggctggg	CRISPR spacer
ccgctaaagaggcgcgcaaggcgctggaggcc	Protospacer
  *.************* .********  *

54. spacer 3.11|3207285|32|NZ_CP009859|CRISPRCasFinder,CRT matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 9, identity: 0.719

aggttaaagaggcgcgccgggcgctggctggg	CRISPR spacer
catgtgaagcggcgcgccgggcgcgggctccg	Protospacer
 .  *.*** ************** ****  *

55. spacer 3.11|3207285|32|NZ_CP009859|CRISPRCasFinder,CRT matches to NZ_MN366361 (Bacterium plasmid pALTS33, complete sequence) position: , mismatch: 9, identity: 0.719

aggttaaagaggcgcgccgggcgctggctggg	CRISPR spacer
ccgctaaagaggcgcgcaaggcgctggaggcc	Protospacer
  *.************* .********  *

56. spacer 3.22|3206857|33|NZ_CP009859|PILER-CR matches to MN855615 (Siphoviridae sp. isolate 320, complete genome) position: , mismatch: 9, identity: 0.727

tatgcgcttgctgctgcgttgatgtacgcggcc	CRISPR spacer
tatgcgcttgctggtgctttgatgggcagtggt	Protospacer
************* *** ****** .*.  * .

57. spacer 3.27|3207162|34|NZ_CP009859|PILER-CR matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 9, identity: 0.735

gcgcggccgcgatatcgttagcactggctcccgc	CRISPR spacer
cggcggccgcgatatcgttcgcgctgccgcgccg	Protospacer
  ***************** **.*** * * *

58. spacer 2.6|3180549|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to NZ_KX711616 (Bacillus subtilis strain 72 plasmid pBS72, complete sequence) position: , mismatch: 10, identity: 0.688

gttagttttctgaaaaaattgttttcttacgc	CRISPR spacer
aaagcttttcttaaaagattgttttctttgtc	Protospacer
.  . ****** ****.***********   *

59. spacer 3.11|3207285|32|NZ_CP009859|CRISPRCasFinder,CRT matches to NC_004929 (Ruegeria sp. PR1b plasmid pSD20, complete sequence) position: , mismatch: 10, identity: 0.688

aggttaaagaggcgcgccgggcgctggctggg	CRISPR spacer
ccctctggcaggcgcgccgggcgcaggcgggg	Protospacer
   *. .. *************** *** ***

60. spacer 2.6|3180549|32|NZ_CP009859|CRT,CRISPRCasFinder,PILER-CR matches to NC_023026 (Francisella novicida strain PA10-7858 plasmid pFNPA10, complete sequence) position: , mismatch: 11, identity: 0.656

gttagttttctgaaaaaattgttttcttacgc	CRISPR spacer
aacgccactctgaaaaagttgttttctttcgt	Protospacer
. .. . .*********.********** **.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

204458 : 270283

Emiliania_huxleyi_virus(11.11%)

tRNA,plate,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022645195.1\|204458_205811_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_001240896.1\|205840_208273_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_000758956.1\|208394_208880_+	molecular chaperone Skp	NA	NA	NA	NA
WP_001139282.1\|208883_209909_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_000210739.1\|210013_210469_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_000565966.1\|210472_211261_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_022645196.1\|211260_212409_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_022645197.1\|212405_213002_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	2.3e-26	40.0
WP_001294757.1\|213038_216521_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	2.2e-209	36.9
WP_000055746.1\|216533_217493_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_001020966.1\|217591_219733_+	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_000901098.1\|219789_220179_+	VOC family protein	NA	NA	NA	NA
WP_022645198.1\|220243_221542_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000062318.1\|221590_221851_-	Rho-binding antiterminator	NA	NA	NA	NA
WP_000417058.1\|221837_222038_-	YaeP family protein	NA	NA	NA	NA
WP_001185283.1\|222203_222749_+	YaeQ family protein	NA	NA	NA	NA
WP_000635528.1\|222745_223168_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_000239184.1\|223181_223892_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_022645199.1\|224047_224872_-	YaeF family permuted papain-like enzyme	NA	NA	NA	NA
WP_022645200.1\|224924_226643_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_000094006.1\|226753_227461_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001202329.1\|227457_227862_-	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000874226.1\|227979_228795_-	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001294600.1\|228834_229488_-	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_000593991.1\|229480_230512_-	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	7.2e-36	40.2
WP_001140178.1\|230699_231272_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_022645201.1\|237041_237845_+	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	2.7e-38	35.8
WP_000648568.1\|237841_238756_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001230983.1\|238996_239797_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000211702.1\|239873_240644_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000644685.1\|240691_242050_-	murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	5.8e-09	36.0
WP_001052732.1\|242121_242877_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_001308373.1\|242910_243633_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000917883.1\|243629_244097_-	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-50	58.7
WP_001308374.1\|244161_244893_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	7.6e-40	38.6
WP_022645202.1\|245427_246213_+	hypothetical protein	NA	NA	NA	NA
WP_022645203.1\|246362_246830_-	hypothetical protein	NA	NA	NA	NA
WP_022645204.1\|246844_247753_-	hypothetical protein	NA	NA	NA	NA
WP_022645205.1\|247796_248279_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_022645206.1\|248302_249655_-	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_122988716.1\|249665_253100_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_022645208.1\|253208_254624_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_022645209.1\|254628_255372_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_022645210.1\|255368_258128_-	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	7.2e-83	29.0
WP_022645211.1\|258136_258898_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_022645212.1\|258902_260234_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_001080149.1\|260236_260761_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_001113710.1\|260757_262038_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_022645213.1\|262062_263145_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_022645214.1\|263108_264959_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_022645215.1\|264962_265376_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_022645216.1\|265382_266858_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_022645217.1\|266908_267133_-	hypothetical protein	NA	NA	NA	NA
WP_000037391.1\|267167_267668_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_001142958.1\|268364_268883_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_085949836.1\|269069_270283_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	4.7e-103	58.4

DBSCAN-SWA_2

290427 : 373697

Shigella_phage(41.38%)

tail,integrase,terminase,protease,capsid,portal,holin,plate,head

attL 284273:284288|attR 316839:316854

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
284273:284288	attL	NA	NA	NA	NA
WP_022645228.1\|290427_291483_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	2.9e-117	60.6
WP_022645229.1\|291770_292874_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.4e-61	40.1
WP_022645230.1\|292885_294139_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.4e-96	47.5
WP_000051887.1\|294343_295507_-\|integrase	site-specific integrase	U5P434	Shigella_phage	2.4e-229	100.0
WP_000206732.1\|295733_296039_-	hypothetical protein	U5P0J0	Shigella_phage	6.8e-51	100.0
WP_027662058.1\|296038_296401_-	hypothetical protein	U5P092	Shigella_phage	9.8e-65	96.7
WP_038431918.1\|296391_296928_-	5'-deoxynucleotidase	S5MW55	Escherichia_phage	4.1e-99	98.3
WP_000016389.1\|297472_297907_+	hypothetical protein	U5P096	Shigella_phage	8.4e-79	100.0
WP_000549626.1\|297878_298085_-	hypothetical protein	NA	NA	NA	NA
WP_000450735.1\|298332_298959_-	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	5.5e-47	48.8
WP_000205494.1\|299056_299257_+	cell division protein	NA	NA	NA	NA
WP_001434539.1\|299294_299846_+	hypothetical protein	S5FXP0	Shigella_phage	7.6e-101	98.9
WP_001250269.1\|300021_300201_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_000104972.1\|300190_301132_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	8.6e-153	99.7
WP_072731119.1\|301128_301623_+	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	9.6e-87	98.8
WP_021823605.1\|301622_302276_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	5.6e-127	99.1
WP_000210155.1\|302272_302599_+	LexA family transcriptional regulator	A0A291AWY9	Escherichia_phage	7.8e-53	98.1
WP_000767113.1\|302595_302985_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
WP_001061418.1\|303004_303802_+	KilA-N domain-containing protein	S5FM84	Shigella_phage	2.2e-149	99.2
WP_023352842.1\|303809_304799_+	DUF968 domain-containing protein	S5FV02	Shigella_phage	1.2e-194	99.7
WP_080086273.1\|304813_305194_+	antitermination protein Q	A5LH77	Enterobacteria_phage	6.1e-57	90.0
WP_000357056.1\|305208_306228_-	hypothetical protein	A0A0R6PIZ6	Moraxella_phage	2.4e-39	32.5
WP_000917724.1\|306547_306751_+	hypothetical protein	A0A291AWX6	Escherichia_phage	6.1e-32	100.0
WP_038431922.1\|306901_307954_+	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	1.3e-205	98.6
WP_001120490.1\|308030_308357_+\|holin	phage holin, lambda family	U5P0K7	Shigella_phage	2.6e-56	98.1
WP_021540768.1\|308360_308837_+	glycoside hydrolase family protein	S5FV07	Shigella_phage	4.9e-88	98.1
WP_001434542.1\|308820_309201_+	DUF2570 domain-containing protein	U5P0U9	Shigella_phage	2.6e-52	87.2
WP_038431925.1\|309376_309946_-	hypothetical protein	NA	NA	NA	NA
WP_038431926.1\|310046_310382_-	hypothetical protein	NA	NA	NA	NA
WP_038431927.1\|310532_310883_+	HNH endonuclease	M1FQV2	Enterobacteria_phage	8.3e-61	93.1
WP_000929182.1\|311009_311504_+\|terminase	phage terminase small subunit P27 family	A0A1B3B2F4	Salmonella_phage	5.6e-87	98.8
WP_122988188.1\|311737_313234_+\|terminase	terminase large subunit	A0A1C9IIA1	Salmonella_phage	2.8e-299	99.6
WP_000605613.1\|313245_313428_+	hypothetical protein	M1FJ83	Enterobacteria_phage	1.1e-24	96.7
WP_038431929.1\|313427_314669_+\|portal	phage portal protein	U5P411	Shigella_phage	3.4e-242	99.3
WP_001193631.1\|314646_315297_+\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	2.5e-119	100.0
WP_038431931.1\|315311_316517_+\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	2.4e-224	99.5
WP_000601366.1\|316566_316767_+	hypothetical protein	M1FN89	Enterobacteria_phage	4.5e-27	98.5
WP_038431933.1\|316769_317093_+\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	9.7e-56	98.1
316839:316854	attR	NA	NA	NA	NA
WP_000702402.1\|317089_317500_+\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	9.1e-75	98.5
WP_000213502.1\|317474_317981_+	hypothetical protein	M1FPE2	Enterobacteria_phage	1.7e-91	100.0
WP_000779296.1\|317977_318538_+	hypothetical protein	Q8SBH4	Shigella_phage	6.1e-106	100.0
WP_000497751.1\|318546_318717_+	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
WP_038431935.1\|318700_320197_+\|tail	phage tail sheath subtilisin-like domain-containing protein	M1FN90	Enterobacteria_phage	2.5e-271	98.6
WP_000090997.1\|320196_320553_+\|tail	phage tail tube protein	U5P076	Shigella_phage	9.0e-63	99.2
WP_038431937.1\|320549_320819_+\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	3.0e-42	98.9
WP_001459474.1\|320960_322796_+\|tail	phage tail tape measure protein	S5FM63	Shigella_phage	7.7e-307	99.5
WP_038431939.1\|322856_324185_+	DNA circularization N-terminal domain-containing protein	Q8SBG8	Shigella_phage	5.5e-246	98.9
WP_038431941.1\|324181_325261_+\|plate	baseplate protein	M1FN92	Enterobacteria_phage	5.0e-205	99.4
WP_001459477.1\|325260_325809_+\|plate	phage baseplate assembly protein	U5P081	Shigella_phage	1.1e-96	98.4
WP_000424723.1\|325808_326234_+	phage GP46 family protein	U5P0R9	Shigella_phage	3.9e-81	99.3
WP_023307733.1\|326220_327279_+\|plate	baseplate J/gp47 family protein	Q8SBG4	Shigella_phage	1.1e-201	99.7
WP_001459479.1\|327269_327854_+	YmfQ family protein	O22003	Shigella_phage	9.2e-113	99.0
WP_038431942.1\|327857_328628_+\|tail	tail fiber protein	U5P0I1	Shigella_phage	2.0e-51	94.4
WP_000368085.1\|328627_329230_+\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	1.2e-99	90.0
WP_001106828.1\|329201_329642_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	5.6e-54	69.7
WP_032164935.1\|329663_330053_-	hypothetical protein	M1FN94	Enterobacteria_phage	4.2e-13	52.9
WP_021570684.1\|330082_330637_+	site-specific DNA recombinase	A0A1S6L009	Salmonella_phage	4.4e-88	89.5
WP_063077857.1\|330875_331691_-	hypothetical protein	NA	NA	NA	NA
WP_032336984.1\|332167_333109_-	hypothetical protein	NA	NA	NA	NA
WP_023150042.1\|333361_334732_-	FRG domain-containing protein	NA	NA	NA	NA
WP_001019920.1\|335914_336529_+	YagU family protein	NA	NA	NA	NA
WP_001303809.1\|336778_337108_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_001361803.1\|337420_338131_-	fimbrial chaperone EcpE	NA	NA	NA	NA
WP_022645232.1\|338099_339743_-	fimbrial adhesin EcpD	NA	NA	NA	NA
WP_022645233.1\|339732_342258_-	fimbrial usher EcpC	NA	NA	NA	NA
WP_000716409.1\|342283_342952_-	fimbrial chaperone EcpB	NA	NA	NA	NA
WP_000730982.1\|343009_343597_-	common pilus major fimbrillin subunit EcpA	NA	NA	NA	NA
WP_000389022.1\|343671_344214_-	ECP biosynthesis operon DNA-binding transcriptional regulator EcpR	NA	NA	NA	NA
WP_000866436.1\|345297_345438_-	50S ribosomal protein L36	NA	NA	NA	NA
WP_000803998.1\|345437_345701_-	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_000662258.1\|346065_346167_-	hypothetical protein	NA	NA	NA	NA
WP_000182338.1\|346640_347783_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA
WP_000860025.1\|348027_348948_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001328123.1\|349104_350031_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012311907.1\|350230_351124_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001172285.1\|351154_352144_-	aldo/keto reductase	NA	NA	NA	NA
WP_001174452.1\|352170_353022_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.2e-47	40.7
WP_022645237.1\|353587_357841_+	intimin-like adhesin FdeC	NA	NA	NA	NA
WP_022645238.1\|357961_358819_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_022645239.1\|359066_359936_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.1e-53	42.5
WP_001355150.1\|360095_360689_-	reactive chlorine species resistance protein RclC	NA	NA	NA	NA
WP_000474002.1\|360700_360937_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_022645240.1\|361045_362371_-	pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	2.3e-111	47.4
WP_001361807.1\|362597_363452_+	DNA-binding transcriptional regulator RclR	NA	NA	NA	NA
WP_022645241.1\|363977_364697_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_000023918.1\|364707_366135_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA
WP_022645242.1\|366127_366823_+	lactate utilization protein C	NA	NA	NA	NA
WP_022645243.1\|367065_367566_-	hypothetical protein	NA	NA	NA	NA
WP_022645244.1\|367759_369448_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.2e-59	31.1
WP_022645245.1\|369461_370934_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_022645246.1\|370947_371535_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_000131040.1\|371663_373697_+\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	3.4e-21	27.4

DBSCAN-SWA_3

570422 : 636737

Enterobacteria_phage(61.11%)

tRNA,tail,integrase,terminase,protease,capsid,portal,transposase,head,lysis

attL 581351:581397|attR 628283:628329

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000912345.1\|570422_571808_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
WP_001143564.1\|571843_572365_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190288.1\|572472_572685_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729155.1\|572686_573553_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
WP_000776555.1\|574024_574567_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_022645303.1\|574786_575479_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_022645304.1\|575509_578119_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_001255235.1\|579926_580442_+	fimbria assembly protein	NA	NA	NA	NA
WP_000805428.1\|580444_581077_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
581351:581397	attL	NA	NA	NA	NA
WP_001299447.1\|581410_582574_-\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	3.4e-199	86.3
WP_000488407.1\|582772_583051_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.9e-48	97.8
WP_022645305.1\|583098_583317_-	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	5.4e-34	97.2
WP_000548537.1\|583708_583900_-	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	2.1e-26	98.4
WP_000149544.1\|583872_584055_-	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	6.9e-27	96.7
WP_000186848.1\|584051_584732_-	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	1.6e-132	100.0
WP_022645306.1\|584728_585514_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.9e-148	99.2
WP_020241285.1\|585519_585816_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	3.6e-49	99.0
WP_000233579.1\|585892_586099_-	hypothetical protein	K7PM31	Enterobacteria_phage	7.1e-28	83.8
WP_000858975.1\|586693_587383_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.8e-92	75.0
WP_001067458.1\|587487_587718_+	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
WP_001182772.1\|587787_588327_+	hypothetical protein	M9NZI6	Enterobacteria_phage	1.5e-61	66.1
WP_000147901.1\|588323_589343_+	replication protein	A0A0M5M7Y1	Salmonella_phage	4.4e-110	63.8
WP_000788890.1\|589339_590041_+	Replication protein P	M1FJ72	Enterobacteria_phage	7.9e-127	97.4
WP_000145902.1\|590037_590340_+	hypothetical protein	A0A0N6WES4	Escherichia_phage	1.7e-41	93.5
WP_001070451.1\|590407_590740_+	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA
WP_032139864.1\|590831_590939_+	hypothetical protein	NA	NA	NA	NA
WP_000709074.1\|590996_592523_+	recombinase family protein	Q3HQV4	Burkholderia_phage	3.6e-31	27.7
WP_001351655.1\|592634_592958_+	hypothetical protein	NA	NA	NA	NA
WP_000379700.1\|593419_593776_+	hypothetical protein	NA	NA	NA	NA
WP_072130332.1\|593865_593967_+	hypothetical protein	NA	NA	NA	NA
WP_001053034.1\|593963_594419_+	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	4.9e-61	67.5
WP_000224912.1\|594418_594589_+	hypothetical protein	K7P7K0	Enterobacteria_phage	1.4e-13	69.8
WP_000774504.1\|594581_594872_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	2.8e-46	92.7
WP_001099712.1\|594868_595231_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	4.3e-60	96.5
WP_000971074.1\|595227_595368_+	YlcG family protein	K7PHH3	Enterobacteria_phage	6.5e-09	69.8
WP_022645308.1\|595453_595831_+	antitermination protein Q	Q777W5	Enterobacteria_phage	8.1e-54	83.3
WP_000780581.1\|595986_596511_-	lipocalin family protein	A0A1W6JNX6	Morganella_phage	1.1e-48	54.1
WP_000592546.1\|596703_597663_+	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_022645309.1\|598014_598746_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000839582.1\|598933_599149_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.2e-33	98.6
WP_001135261.1\|599148_599646_+	lysozyme RrrD	A0A1B5FP97	Escherichia_phage	4.2e-90	97.6
WP_000092273.1\|599642_600110_+\|lysis	lysis protein	A0A2D1GLQ7	Escherichia_phage	1.6e-75	96.8
WP_001139678.1\|600097_600250_+	hypothetical protein	K7PKL2	Enterobacteria_phage	3.1e-20	96.0
WP_000079508.1\|600601_601012_-	DUF1398 family protein	C6ZCX4	Enterobacteria_phage	1.3e-52	76.3
WP_000105084.1\|601068_601302_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	7.3e-21	94.4
WP_000453580.1\|601690_602236_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	2.8e-95	100.0
WP_001027268.1\|602210_604136_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.7
WP_000198149.1\|604132_604339_+	gpW family protein	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001553867.1\|604335_605937_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	8.5e-310	99.2
WP_022645310.1\|605917_607237_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	6.9e-233	98.2
WP_001297109.1\|607246_607579_+\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	2.2e-55	100.0
WP_022645311.1\|607634_608660_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.0e-191	99.4
WP_000158919.1\|608701_609100_+	DNA-packaging protein FI	A0A0K2FIR1	Enterobacteria_phage	3.1e-64	100.0
WP_000752979.1\|609111_609465_+\|head,tail	head-tail joining protein	A0A0K2FJB7	Enterobacteria_phage	2.0e-62	100.0
WP_000985119.1\|609476_610055_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-80	99.5
WP_000683105.1\|610051_610447_+\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	1.0e-70	100.0
WP_001547245.1\|610454_611195_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	1.7e-127	95.9
WP_001468358.1\|611210_611633_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.8e-71	97.9
WP_022645312.1\|611614_612049_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.5e-64	99.2
WP_022645313.1\|612041_614603_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	92.5
WP_000847321.1\|614599_614929_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	8.9e-57	97.2
WP_001152639.1\|614928_615627_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.3e-134	100.0
WP_022645314.1\|615632_616376_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.9e-149	97.6
WP_000090891.1\|616312_616945_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.2e-96	99.5
WP_023909233.1\|617005_620485_+	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	89.6
WP_038431964.1\|620552_621152_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	4.4e-102	92.5
WP_023909117.1\|621216_623574_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A1X7QGG5	Escherichia_phage	2.2e-117	50.1
WP_001204892.1\|623573_623843_+	hypothetical protein	NA	NA	NA	NA
WP_022645319.1\|623855_624896_+\|tail	tail fiber domain-containing protein	A0A0E3M4A9	Enterobacteria_phage	2.1e-176	91.9
WP_000386784.1\|625907_626657_+	DNA-binding transcriptional activator AppY	NA	NA	NA	NA
WP_001201842.1\|626905_627859_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_001177457.1\|628371_629133_-	DNA-binding transcriptional regulator EnvY	NA	NA	NA	NA
628283:628329	attR	NA	NA	NA	NA
WP_022645321.1\|629315_630206_-	DUF4434 family protein	NA	NA	NA	NA
WP_022645322.1\|630206_633179_-	bacteriophage adsorption protein NfrA	NA	NA	NA	NA
WP_022645323.1\|633165_635403_-	phage adsorption protein NrfB	NA	NA	NA	NA
WP_022645324.1\|635600_636737_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

955341 : 1029426

Salmonella_phage(68.0%)

tail,integrase,terminase,protease,capsid,portal,plate,head,lysis

attL 955241:955267|attR 989620:989646

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
955241:955267	attL	NA	NA	NA	NA
WP_001595551.1\|955341_956394_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	4.8e-104	55.8
WP_022645415.1\|956476_958153_-	DUF4041 domain-containing protein	A0A142LP25	Marinitoga_camini_virus	9.8e-83	66.8
WP_022645416.1\|958173_958770_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.4e-39	42.9
WP_000188448.1\|958865_959087_+	hypothetical protein	NA	NA	NA	NA
WP_022645417.1\|959119_959629_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	1.3e-86	98.2
WP_000956182.1\|959636_959837_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	7.1e-33	98.5
WP_001311552.1\|959800_960142_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	1.7e-55	98.2
WP_001244228.1\|960209_960443_+	DUF2732 family protein	E5G6L6	Salmonella_phage	6.4e-33	98.7
WP_001399246.1\|960442_960670_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	7.8e-36	98.7
WP_000104157.1\|960666_961524_+	DNA adenine methylase	E5G6L8	Salmonella_phage	4.1e-162	98.2
WP_022645418.1\|961520_963935_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.6
WP_001154434.1\|964088_964277_+	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_001217562.1\|964287_964521_+	DinI family protein	E5G6M1	Salmonella_phage	2.3e-35	98.7
WP_022645419.1\|964695_965754_-	hypothetical protein	NA	NA	NA	NA
WP_022645420.1\|966287_968069_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_022645421.1\|968105_969140_-\|portal	phage portal protein	E5G6M3	Salmonella_phage	2.3e-167	85.5
WP_022645422.1\|969139_970906_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
WP_022645423.1\|971048_971882_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	2.8e-123	91.0
WP_000742503.1\|971898_972957_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	8.4e-181	93.1
WP_021534472.1\|972960_973611_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	9.6e-111	95.8
WP_000673523.1\|973706_974171_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	6.4e-77	89.6
WP_000868175.1\|974170_974374_+\|tail	tail protein X	E5G6M9	Salmonella_phage	1.4e-31	92.5
WP_000171568.1\|974377_974593_+	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_022645424.1\|974573_975086_+	lysozyme	E5G6N1	Salmonella_phage	2.0e-87	91.1
WP_022645425.1\|975087_975465_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	8.8e-16	40.0
WP_022645426.1\|975461_975890_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	1.9e-46	75.2
WP_001595569.1\|975985_976417_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	9.9e-72	93.7
WP_021522006.1\|976409_976856_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	4.0e-60	84.2
WP_022645427.1\|976797_977604_-	hypothetical protein	NA	NA	NA	NA
WP_000993764.1\|977707_978286_+\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	7.2e-94	86.5
WP_000177597.1\|978282_978642_+	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	2.8e-51	85.7
WP_022645428.1\|978628_979537_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	3.5e-143	90.7
WP_022645429.1\|979529_980135_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.2e-110	92.5
WP_022645430.1\|980131_981673_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	7.6e-199	71.2
WP_022645431.1\|981672_982275_+\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	3.7e-93	84.4
WP_000046146.1\|982408_983581_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	7.8e-204	90.0
WP_001207660.1\|983590_984106_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	2.1e-89	95.3
WP_022645432.1\|984160_984463_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	3.5e-39	88.0
WP_000763311.1\|984477_984597_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_022645433.1\|984589_987667_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	69.3
WP_022645434.1\|987663_988149_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.6e-65	79.4
WP_022645435.1\|988145_989246_+	phage late control D family protein	E5G6Q3	Salmonella_phage	1.0e-176	85.2
WP_000972391.1\|989336_989555_+	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_001024876.1\|989790_991476_-	aspartate:alanine antiporter	NA	NA	NA	NA
989620:989646	attR	NA	NA	NA	NA
WP_000681108.1\|991745_992123_+	hypothetical protein	NA	NA	NA	NA
WP_001195231.1\|992152_992410_-	glutaredoxin 1	A0A2I7SAE2	Vibrio_phage	7.8e-24	63.1
WP_022645436.1\|992569_992857_+	DUF1418 family protein	NA	NA	NA	NA
WP_022645437.1\|992840_993563_+	nitroreductase NfsA	NA	NA	NA	NA
WP_000684321.1\|993623_994526_+	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	2.6e-37	34.4
WP_000203025.1\|994613_995090_+	YbjN domain-containing protein	NA	NA	NA	NA
WP_000126075.1\|995440_996553_+	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_000996007.1\|996647_997781_+	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	1.4e-29	34.0
WP_000105436.1\|997790_998744_+	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_001061658.1\|998740_999586_+	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_000389260.1\|999645_1000134_+	YbjO family protein	NA	NA	NA	NA
WP_001149713.1\|1000174_1001302_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A1X9I6F4	Streptococcus_phage	3.5e-28	27.6
WP_001295905.1\|1001330_1002062_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000464489.1\|1002287_1002956_-	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_001001702.1\|1002955_1003672_-	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_000756575.1\|1003678_1004410_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000027205.1\|1004427_1005156_-	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	6.0e-29	36.7
WP_001270657.1\|1005373_1005889_-	lipoprotein	NA	NA	NA	NA
WP_022645438.1\|1006536_1008306_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_001160731.1\|1008516_1008840_+	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_001255167.1\|1008836_1009667_+	N-acetylmuramoyl-L-alanine amidase AmiD	A0A1B0UZW5	Roseobacter_phage	5.7e-07	30.0
WP_001305933.1\|1009663_1010677_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_022645439.1\|1010775_1012206_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_000566375.1\|1012216_1013218_-	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_000815366.1\|1013254_1014973_-	ubiquinone-dependent pyruvate dehydrogenase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	6.8e-31	24.0
WP_000178691.1\|1015105_1016074_-	NADH oxidoreductase	NA	NA	NA	NA
WP_022645440.1\|1016085_1017738_-	hydroxylamine reductase	NA	NA	NA	NA
WP_022645441.1\|1017880_1018780_-	L-lysine exporter LysO	NA	NA	NA	NA
WP_000488716.1\|1019237_1019933_-	aquaporin Z	NA	NA	NA	NA
WP_000599806.1\|1020358_1022017_+	ATP-dependent endonuclease	NA	NA	NA	NA
WP_001400542.1\|1022013_1022970_-	DUF535 domain-containing protein	NA	NA	NA	NA
WP_000746460.1\|1023120_1024236_+	macrolide transporter subunit MacA	NA	NA	NA	NA
WP_022645444.1\|1024232_1026179_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	6.5e-38	40.1
WP_000410785.1\|1026251_1026476_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	2.3e-16	61.2
WP_000520781.1\|1026798_1027119_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
WP_000934041.1\|1027149_1029426_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5

DBSCAN-SWA_5

1756793 : 1852075

103

Enterobacteria_phage(38.6%)

tail,terminase,protease,portal,transposase,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088895425.1\|1756793_1758022_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3
WP_071586389.1\|1759580_1759799_-	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L1IV18	Escherichia_phage	3.7e-19	58.6
WP_022645702.1\|1764518_1766111_-	autoinducer-2 kinase	NA	NA	NA	NA
WP_000154352.1\|1766189_1767143_-	transcriptional regulator LsrR	NA	NA	NA	NA
WP_001194902.1\|1767391_1768927_+	autoinducer 2 ABC transporter ATP-binding protein LsrA	A0A2H4PQG7	Staphylococcus_phage	3.2e-16	24.0
WP_022645703.1\|1768920_1769949_+	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
WP_001222725.1\|1769948_1770941_+	autoinducer 2 ABC transporter permease LsrD	NA	NA	NA	NA
WP_000172485.1\|1770952_1771975_+	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
WP_022645704.1\|1772001_1772877_+	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_000558525.1\|1772900_1773191_+	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
WP_022645705.1\|1773247_1774006_+	trans-aconitate 2-methyltransferase	NA	NA	NA	NA
WP_022645706.1\|1774009_1774924_-	hypothetical protein	NA	NA	NA	NA
WP_022645707.1\|1775120_1776572_-	tagaturonate reductase	NA	NA	NA	NA
WP_022645708.1\|1776799_1778218_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.4e-18	36.1
WP_022645709.1\|1778356_1778716_-	DUF4186 domain-containing protein	NA	NA	NA	NA
WP_000257409.1\|1778715_1779642_-	glutaminase B	NA	NA	NA	NA
WP_000156623.1\|1779705_1781094_-	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_000366505.1\|1781194_1782076_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_022645710.1\|1782153_1783269_+	putative protein YneK	NA	NA	NA	NA
WP_000210799.1\|1783418_1784609_+	L-arabinose MFS transporter	NA	NA	NA	NA
WP_000885033.1\|1784633_1785299_-	NAAT family transporter MarC	NA	NA	NA	NA
WP_022645711.1\|1785510_1785945_+	multiple antibiotic resistance transcriptional regulator MarR	NA	NA	NA	NA
WP_000091199.1\|1785965_1786349_+	MDR efflux pump AcrAB transcriptional activator MarA	D0R0F8	Streptococcus_phage	4.7e-09	32.3
WP_000803527.1\|1786380_1786599_+	multiple antibiotic resistance protein MarB	NA	NA	NA	NA
WP_000087204.1\|1786629_1787529_-	O-acetylserine/cysteine exporter	NA	NA	NA	NA
WP_022645712.1\|1787723_1788911_+	efflux MFS transporter YdeE	NA	NA	NA	NA
WP_000901367.1\|1789037_1789133_+	protein MgtS	NA	NA	NA	NA
WP_000592819.1\|1789351_1790242_-	diguanylate cyclase DgcZ	A0A127AWB9	Bacillus_phage	1.4e-19	37.0
WP_022645713.1\|1790496_1790889_-	YdeI family stress tolerance OB fold protein	NA	NA	NA	NA
WP_022645714.1\|1791254_1793300_-	peptidyl-dipeptidase Dcp	NA	NA	NA	NA
WP_000636571.1\|1793436_1794183_+	bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG	NA	NA	NA	NA
WP_022645715.1\|1794271_1794958_+	DNA-binding transcriptional regulator YdfH	NA	NA	NA	NA
WP_000214712.1\|1795134_1795338_+	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	1.6e-11	55.2
WP_000527788.1\|1795373_1796834_-	mannitol dehydrogenase family protein	G8DCZ3	Micromonas_pusilla_virus	6.6e-43	30.1
WP_000347484.1\|1796923_1798207_-	MHS family MFS transporter	NA	NA	NA	NA
WP_120795384.1\|1798811_1798925_+	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000836768.1\|1798993_1799227_+	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_000086527.1\|1799543_1800134_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
WP_001546828.1\|1800361_1800655_-	hypothetical protein	NA	NA	NA	NA
WP_001546829.1\|1800697_1801738_-\|tail	tail fiber domain-containing protein	A0A0E3M4A9	Enterobacteria_phage	4.5e-155	80.5
WP_001546830.1\|1801748_1802027_-	hypothetical protein	A0A0E3GMJ7	Enterobacteria_phage	3.8e-24	54.3
WP_001546831.1\|1802023_1804396_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0E3M0V5	Enterobacteria_phage	4.1e-103	47.5
WP_001228249.1\|1804460_1805060_-	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	1.5e-102	92.0
WP_022645716.1\|1805127_1808607_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.3
WP_023277304.1\|1808667_1809315_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	4.7e-110	94.9
WP_024946565.1\|1809212_1809956_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	9.2e-150	98.4
WP_001152382.1\|1809961_1810660_-\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	1.3e-134	99.6
WP_000447253.1\|1810669_1810999_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.7e-60	100.0
WP_022645718.1\|1810998_1814064_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	98.2
WP_063815218.1\|1814047_1814365_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	4.4e-53	100.0
WP_001370402.1\|1814373_1814760_-\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	4.9e-62	96.1
WP_022645720.1\|1814820_1815564_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	7.3e-131	98.4
WP_001079410.1\|1815574_1815976_-\|tail	tail protein	A0A291AWY2	Escherichia_phage	2.4e-72	99.2
WP_000677120.1\|1815972_1816563_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	7.2e-81	80.1
WP_022645721.1\|1816574_1816850_-	phage protein	K7PH43	Enterobacteria_phage	3.8e-45	98.9
WP_001097050.1\|1816842_1817166_-	DUF2190 family protein	A0A291AWX2	Escherichia_phage	8.5e-52	100.0
WP_001136588.1\|1817251_1819279_-\|protease	Clp protease ClpP	K7PGT6	Enterobacteria_phage	0.0e+00	99.7
WP_000985958.1\|1819223_1820732_-\|portal	phage portal protein	A5LH29	Enterobacteria_phage	6.6e-288	99.4
WP_001072975.1\|1820731_1820944_-	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_000934104.1\|1820940_1823043_-\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	0.0e+00	96.7
WP_022645722.1\|1823042_1823537_-	DUF1441 family protein	A0A291AWV8	Escherichia_phage	3.8e-83	99.4
WP_000548593.1\|1824089_1824296_-	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	3.4e-22	79.4
WP_001019207.1\|1824591_1824765_-	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_001443523.1\|1824937_1825093_-	hypothetical protein	NA	NA	NA	NA
WP_071526745.1\|1825240_1825429_-	cold-shock protein	NA	NA	NA	NA
WP_000066495.1\|1825439_1825652_-	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_001071776.1\|1826016_1826514_-	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_001092966.1\|1826510_1827044_-	lysozyme	K7PLY1	Enterobacteria_phage	8.4e-97	93.2
WP_000196128.1\|1827040_1827352_-	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	1.5e-24	62.6
WP_000839562.1\|1827356_1827572_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.3e-32	94.4
WP_001348108.1\|1827823_1828198_-	hypothetical protein	NA	NA	NA	NA
WP_022645723.1\|1828369_1828798_-	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_000562553.1\|1829164_1829296_-	DUF3927 family protein	H6WZJ7	Escherichia_phage	3.7e-06	100.0
WP_000762886.1\|1830191_1831013_-	antitermination protein	K7P7B9	Enterobacteria_phage	2.1e-78	59.0
WP_000904111.1\|1831027_1831384_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	6.1e-35	62.7
WP_001376415.1\|1831396_1832446_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	6.5e-109	54.6
WP_032140164.1\|1832447_1832726_-	hypothetical protein	A0A077KB22	Edwardsiella_phage	6.1e-06	37.1
WP_000980999.1\|1832792_1833044_-	hypothetical protein	NA	NA	NA	NA
WP_000887491.1\|1833260_1833473_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.7e-29	97.1
WP_001546200.1\|1833517_1833625_+	hypothetical protein	Q7Y2Q9	Escherichia_phage	2.5e-08	96.6
WP_022645725.1\|1834487_1835510_-	hypothetical protein	Q858S2	Enterobacteria_phage	2.5e-105	62.4
WP_001151189.1\|1835709_1836111_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.4e-64	95.5
WP_000054505.1\|1836151_1837117_-	hypothetical protein	U5P0A0	Shigella_phage	2.9e-55	61.2
WP_000705349.1\|1837097_1837619_-	hypothetical protein	NA	NA	NA	NA
WP_000476993.1\|1837602_1837830_-	transcriptional regulator	NA	NA	NA	NA
WP_001003381.1\|1837907_1838315_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	2.5e-24	46.2
WP_000379591.1\|1838507_1838660_+	DUF1391 family protein	M4QQ57	Salicola_phage	6.6e-07	53.2
WP_001241299.1\|1838659_1839037_+	hypothetical protein	NA	NA	NA	NA
WP_000159335.1\|1839005_1839206_-	hypothetical protein	NA	NA	NA	NA
WP_001317853.1\|1839708_1839897_+	hypothetical protein	NA	NA	NA	NA
WP_001090200.1\|1839893_1840085_+	DUF1482 family protein	NA	NA	NA	NA
WP_024946566.1\|1840177_1842649_+	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	57.5
WP_000005552.1\|1842721_1842973_+	excisionase family protein	S4TND0	Salmonella_phage	2.2e-15	50.0
WP_000876976.1\|1843007_1844288_+	DUF3596 domain-containing protein	B6DZ48	Enterobacteria_phage	1.0e-156	62.6
WP_001389342.1\|1844289_1844418_-	hypothetical protein	NA	NA	NA	NA
WP_000836037.1\|1844475_1845495_-	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	4.3e-17	26.2
WP_001295394.1\|1845506_1846721_-	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
WP_001304355.1\|1846926_1847253_-	YnfA family protein	A0A218MNG8	uncultured_virus	2.9e-23	54.5
WP_000705197.1\|1847387_1847729_+	DUF1283 family protein	NA	NA	NA	NA
WP_001138584.1\|1847763_1848324_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_001445899.1\|1848326_1849037_-	YnfC family lipoprotein	NA	NA	NA	NA
WP_001295396.1\|1849144_1849450_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_022645727.1\|1849648_1852075_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.7e-213	49.2

DBSCAN-SWA_6

2396190 : 2404906

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000735124.1\|2396190_2397318_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAI1	Catovirus	5.3e-32	30.4
WP_001362820.1\|2397327_2398566_-	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_001100791.1\|2398597_2399146_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.2e-51	56.1
WP_000857549.1\|2399150_2400029_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.5e-106	64.1
WP_001023627.1\|2400086_2400986_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.5e-29	35.6
WP_000699418.1\|2400985_2402071_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.4e-101	54.2
WP_000183060.1\|2402443_2403337_-	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	1.0e-46	42.0
WP_001116131.1\|2403511_2404906_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	2.8e-19	31.9

DBSCAN-SWA_7

2497020 : 2506462

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001329822.1\|2497020_2498157_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	4.2e-162	97.4
WP_022645869.1\|2498153_2500154_+	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.8
WP_001296231.1\|2500278_2500740_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_001295430.1\|2500780_2501251_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_012311742.1\|2501297_2502017_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001334139.1\|2502013_2503699_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	9.5e-304	99.5
WP_001240398.1\|2503920_2504652_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.8e-111	99.0
WP_001216963.1\|2504711_2504819_+	protein YohO	NA	NA	NA	NA
WP_022645871.1\|2504799_2505531_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_022645872.1\|2505535_2506462_-	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	2.2e-23	30.8

DBSCAN-SWA_8

2900937 : 2907881

Escherichia_phage(88.89%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000017552.1\|2900937_2901090_-	hypothetical protein	G9L6F3	Escherichia_phage	1.7e-18	96.0
WP_000076001.1\|2901107_2901299_+	DUF2633 family protein	G9L6F2	Escherichia_phage	7.3e-27	100.0
WP_001295476.1\|2901609_2902128_+	glycine zipper 2TM domain-containing protein	G9L6F1	Escherichia_phage	1.3e-62	100.0
WP_022645975.1\|2902143_2902683_+	DUF5384 family protein	G9L6F0	Escherichia_phage	2.9e-44	96.6
WP_032152016.1\|2902902_2903385_-	DUF2514 domain-containing protein	A0A0F6TK39	Escherichia_coli_O157_typing_phage	3.2e-71	90.0
WP_024946531.1\|2903381_2904011_-	glycoside hydrolase family 19 protein	G9L6E8	Escherichia_phage	1.8e-114	97.6
WP_001546697.1\|2904000_2904309_-\|holin	phage holin family protein	G9L6E7	Escherichia_phage	1.2e-47	95.1
WP_001275999.1\|2904295_2904700_-	membrane protein	G9L6E6	Escherichia_phage	2.7e-63	97.0
WP_024946530.1\|2904922_2905219_-	hypothetical protein	NA	NA	NA	NA
WP_001188253.1\|2907623_2907881_+	hypothetical protein	G9L6E3	Escherichia_phage	3.4e-43	100.0

DBSCAN-SWA_9

2912016 : 2946507

Escherichia_phage(50.0%)

tail,integrase,terminase

attL 2909840:2909855|attR 2947276:2947291

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2909840:2909855	attL	NA	NA	NA	NA
WP_032152018.1\|2912016_2915406_-	hypothetical protein	A0A1E1GEP2	Vibrio_phage	3.4e-183	36.8
WP_024946525.1\|2915405_2918153_-	hypothetical protein	A0A193GYI3	Enterobacter_phage	1.2e-117	43.5
WP_000332877.1\|2918152_2918728_-	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	7.0e-81	95.3
WP_000228790.1\|2918727_2919192_-	hypothetical protein	G9L6D1	Escherichia_phage	1.1e-84	99.4
WP_001018550.1\|2919191_2921663_-	hypothetical protein	G9L6D0	Escherichia_phage	0.0e+00	99.3
WP_000179260.1\|2921662_2922268_-	hypothetical protein	G9L6C9	Escherichia_phage	2.8e-112	100.0
WP_000012377.1\|2922324_2922660_-	hypothetical protein	G9L6C7	Escherichia_phage	7.7e-56	100.0
WP_024946524.1\|2922670_2923108_-	hypothetical protein	A0A0F6R7N9	Escherichia_coli_O157_typing_phage	1.9e-70	94.5
WP_024946523.1\|2923159_2924146_-	hypothetical protein	G9L6C5	Escherichia_phage	2.5e-179	94.5
WP_001048075.1\|2924160_2924856_-	peptidase	G9L6C4	Escherichia_phage	6.0e-95	100.0
WP_000133160.1\|2924858_2925155_-	hypothetical protein	G9L6C3	Escherichia_phage	1.3e-46	100.0
WP_024946522.1\|2925151_2926831_-\|tail	tail protein	G9L6C2	Escherichia_phage	3.1e-302	99.1
WP_000335899.1\|2926845_2927052_-	hypothetical protein	G9L6C1	Escherichia_phage	6.0e-11	100.0
WP_024946521.1\|2927813_2928419_+	hypothetical protein	NA	NA	NA	NA
WP_024946520.1\|2928423_2929893_-	hypothetical protein	G9L6B8	Escherichia_phage	1.2e-289	97.4
WP_024946519.1\|2929889_2930564_-\|terminase	terminase small subunit	Q287B7	Escherichia_phage	3.4e-119	99.6
WP_024946517.1\|2931056_2931986_-	DUF551 domain-containing protein	Q1MVF7	Enterobacteria_phage	7.9e-66	50.6
WP_024946516.1\|2932499_2933264_-	ead/Ea22-like family protein	A0A1B0VCG7	Salmonella_phage	2.4e-68	95.6
WP_001593200.1\|2933265_2933565_-	hypothetical protein	A5VWB2	Enterobacteria_phage	1.4e-56	97.0
WP_024946515.1\|2933561_2934107_-	hypothetical protein	J9Q748	Salmonella_phage	3.2e-83	83.2
WP_024946514.1\|2934103_2934583_-	hypothetical protein	Q9MCR3	Enterobacteria_phage	1.5e-28	54.2
WP_021558026.1\|2934644_2934992_-	hypothetical protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	5.9e-59	96.5
WP_001066741.1\|2935109_2935895_-	hypothetical protein	A0A0F6TJ71	Escherichia_coli_O157_typing_phage	3.6e-152	99.6
WP_000086414.1\|2935891_2936707_-	helix-turn-helix domain-containing protein	Q286X4	Escherichia_phage	1.7e-117	95.6
WP_000402896.1\|2936722_2936923_-	hypothetical protein	A0A0F6TJB7	Escherichia_coli_O157_typing_phage	1.0e-31	98.5
WP_001282459.1\|2937073_2937304_-	hypothetical protein	G9L6A7	Escherichia_phage	2.6e-39	100.0
WP_000836290.1\|2937458_2938043_+	helix-turn-helix transcriptional regulator	A0A0F6R8L7	Escherichia_coli_O157_typing_phage	7.0e-105	100.0
WP_001198620.1\|2938196_2938349_+	hypothetical protein	G9L6A5	Escherichia_phage	5.4e-25	100.0
WP_001102254.1\|2938351_2938651_+	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	1.4e-45	98.0
WP_000802268.1\|2938647_2939469_+	PD-(D/E)XK nuclease-like domain-containing protein	A0A2R9YJH7	Escherichia_phage	1.2e-163	100.0
WP_000063834.1\|2939465_2940407_+	recombinase RecT	A0A2R9YJJ1	Escherichia_phage	4.5e-178	100.0
WP_000675390.1\|2940456_2940705_+	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	3.6e-42	100.0
WP_001335975.1\|2940862_2941114_+	PerC family transcriptional regulator	G9L6A0	Escherichia_phage	3.1e-41	100.0
WP_000163456.1\|2941106_2941757_+	adenine methylase	A0A2R9YJG0	Escherichia_phage	5.0e-128	100.0
WP_001077944.1\|2941753_2941948_+	DUF1382 family protein	A0A0F6R7M7	Escherichia_coli_O157_typing_phage	9.7e-27	98.4
WP_024946512.1\|2941951_2943202_-\|integrase	site-specific integrase	A0A0F6TJM5	Escherichia_coli_O157_typing_phage	3.0e-238	99.3
WP_000138270.1\|2943394_2944972_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_001299507.1\|2945040_2946507_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.3e-88	39.1
2947276:2947291	attR	NA	NA	NA	NA

DBSCAN-SWA_10

4281535 : 4288260

Morganella_phage(50.0%)

integrase

attL 4278639:4278651|attR 4287075:4287087

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4278639:4278651	attL	NA	NA	NA	NA
WP_038432186.1\|4281535_4282795_+\|integrase	site-specific integrase	A0A1W6JPG6	Morganella_phage	1.5e-192	77.9
WP_001000002.1\|4282890_4283856_+	hypothetical protein	A0A1W6JPD1	Morganella_phage	3.0e-07	51.2
WP_001090782.1\|4283970_4284174_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_000412541.1\|4284173_4284605_+	hypothetical protein	A0A1W6JPH9	Morganella_phage	5.1e-28	49.7
WP_001019370.1\|4284617_4285451_+	antA/AntB antirepressor family protein	G9L6G1	Escherichia_phage	5.3e-21	47.5
WP_000042978.1\|4285443_4285623_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_038432187.1\|4285619_4286648_+	ash family protein	NA	NA	NA	NA
WP_001065738.1\|4286640_4286835_+	hypothetical protein	NA	NA	NA	NA
WP_001024673.1\|4286831_4287095_+	hypothetical protein	NA	NA	NA	NA
4287075:4287087	attR	NA	NA	NA	NA
WP_000181940.1\|4287091_4287313_+	hypothetical protein	NA	NA	NA	NA
WP_038432188.1\|4287305_4287908_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	2.6e-25	36.3
WP_038432190.1\|4287918_4288260_+	hypothetical protein	A0A1B5FPL8	Escherichia_phage	1.1e-33	63.3

DBSCAN-SWA_11

4292876 : 4299427

Sodalis_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000420670.1\|4292876_4293338_+	DUF2824 family protein	Q2A0B3	Sodalis_phage	9.9e-62	72.2
WP_000909176.1\|4293331_4294009_+	hypothetical protein	Q2A0B2	Sodalis_phage	7.0e-56	71.6
WP_038432194.1\|4294008_4295430_+	phage DNA ejection protein	B6SCW4	Bacteriophage	8.2e-123	52.5
WP_038432195.1\|4295429_4297535_+	hypothetical protein	A0A2I7QQN9	Vibrio_phage	6.1e-90	37.1
WP_000087355.1\|4297554_4298169_-	hypothetical protein	NA	NA	NA	NA
WP_000678612.1\|4298691_4298892_-	hypothetical protein	H6WRV2	Salmonella_phage	1.3e-05	43.1
WP_032288720.1\|4298971_4299427_-	hypothetical protein	A0A1W6JPI4	Morganella_phage	2.2e-45	66.4

DBSCAN-SWA_12

4788746 : 4876393

105

Enterobacteria_phage(24.29%)

tail,tRNA,integrase,terminase,protease,capsid,portal,holin,plate,head,lysis

attL 4854564:4854579|attR 4875817:4875832

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022646405.1\|4788746_4789538_+	nucleotidyltransferase domain-containing protein	A0A2D1GQQ2	Pseudomonas_phage	2.0e-46	45.1
WP_022646406.1\|4789551_4790007_-	hypothetical protein	F6MIM0	Haemophilus_phage	6.6e-26	42.7
WP_022646407.1\|4790003_4790711_-	DUF4376 domain-containing protein	A0A0E3JQ06	Enterobacteria_phage	5.3e-14	42.4
WP_022646408.1\|4790707_4792318_-\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	3.8e-84	39.1
WP_022646409.1\|4792320_4793037_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	3.1e-22	37.2
WP_038432214.1\|4793029_4794007_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	1.4e-86	47.8
WP_022646411.1\|4793997_4794357_-	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	1.1e-34	64.2
WP_000679403.1\|4794455_4795157_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	6.4e-12	36.3
WP_022646412.1\|4795166_4796207_-	phage late control D family protein	A4JWL3	Burkholderia_virus	2.0e-73	45.1
WP_001269711.1\|4796194_4796404_-\|tail	tail protein X	A4JWL2	Burkholderia_virus	1.3e-16	60.3
WP_022646413.1\|4796403_4797357_-\|tail	phage tail protein	A4JWL1	Burkholderia_virus	3.3e-35	50.8
WP_022646414.1\|4797356_4799732_-	hypothetical protein	A4JWL0	Burkholderia_virus	1.0e-56	26.0
WP_015674804.1\|4799833_4799962_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_022646415.1\|4799921_4800239_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000907502.1\|4800289_4800814_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	9.5e-69	69.0
WP_022646416.1\|4800813_4802238_-\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	7.0e-191	70.2
WP_000875310.1\|4802227_4802425_-	hypothetical protein	NA	NA	NA	NA
WP_022646417.1\|4802421_4802877_-	hypothetical protein	NA	NA	NA	NA
WP_000777272.1\|4803021_4803336_-	membrane protein	Q5ZQY8	Pseudomonas_phage	9.2e-19	43.2
WP_000266448.1\|4803348_4803954_-	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	3.3e-57	57.1
WP_022646418.1\|4803956_4804244_-	hypothetical protein	Q6QIC8	Burkholderia_phage	3.9e-16	48.6
WP_000619864.1\|4804781_4805129_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	2.2e-21	49.0
WP_022646419.1\|4805183_4806533_-	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_022646420.1\|4807057_4808707_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_000757333.1\|4809061_4809304_+	polysaccharide production threonine-rich protein	NA	NA	NA	NA
WP_001296632.1\|4809417_4810056_+	YjbF family lipoprotein	NA	NA	NA	NA
WP_022646421.1\|4810052_4810790_+	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_022646422.1\|4810789_4812886_+	YjbH domain-containing protein	NA	NA	NA	NA
WP_001295279.1\|4812932_4813211_-	periplasmic protein	NA	NA	NA	NA
WP_000202902.1\|4813424_4813835_+	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_001252058.1\|4813928_4814819_-	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_022646423.1\|4814833_4816378_-	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_000695389.1\|4816531_4817722_-	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_000179165.1\|4818086_4819202_+	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	4.3e-18	31.7
WP_000973665.1\|4819273_4820614_+	maltoporin LamB	NA	NA	NA	NA
WP_000783444.1\|4820856_4821777_+	maltose operon protein MalM	NA	NA	NA	NA
WP_022646424.1\|4822004_4823585_+	SopA family protein	NA	NA	NA	NA
WP_001308201.1\|4823807_4824305_+	chorismate lyase	NA	NA	NA	NA
WP_000455227.1\|4824317_4825190_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_000017354.1\|4825344_4827768_-	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000002907.1\|4827938_4828307_+	diacylglycerol kinase	NA	NA	NA	NA
WP_000646078.1\|4828416_4829025_+	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
WP_001361471.1\|4829097_4830423_+	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_001296638.1\|4830538_4830748_+	CsbD family protein	NA	NA	NA	NA
WP_000416263.1\|4830789_4831305_-	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_022646425.1\|4831622_4832627_+	DUF2713 family protein	NA	NA	NA	NA
WP_001300034.1\|4832988_4833111_+	hypothetical protein	NA	NA	NA	NA
WP_000458583.1\|4833346_4833919_+	SocA family protein	NA	NA	NA	NA
WP_014640052.1\|4833948_4834335_+	hypothetical protein	NA	NA	NA	NA
WP_023908888.1\|4834374_4834548_+	hypothetical protein	K7PJQ2	Enterobacteria_phage	1.4e-21	94.7
WP_001093916.1\|4834595_4834877_-	pyocin activator PrtN family protein	K7PGU0	Enterobacteria_phage	2.8e-43	96.8
WP_024946495.1\|4834913_4835666_-	hypothetical protein	NA	NA	NA	NA
WP_023908886.1\|4835884_4836709_-	DUF2303 family protein	U5P439	Shigella_phage	3.0e-149	99.6
WP_000135680.1\|4836774_4837137_-	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
WP_021530636.1\|4837804_4838479_-	LexA family transcriptional regulator	Q8SBF6	Shigella_phage	3.5e-132	100.0
WP_021527487.1\|4838569_4838770_+	helix-turn-helix domain-containing protein	U5P445	Shigella_phage	1.3e-31	98.5
WP_024946496.1\|4838813_4839371_+	hypothetical protein	K7PGU3	Enterobacteria_phage	1.0e-92	93.5
WP_071789194.1\|4839546_4839726_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	4.6e-15	68.5
WP_038432216.1\|4839715_4840657_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	2.7e-138	92.0
WP_023908881.1\|4840653_4841142_+	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	8.6e-80	93.2
WP_001401088.1\|4841141_4841795_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	3.3e-127	99.1
WP_000210154.1\|4841791_4842118_+	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	2.7e-53	99.1
WP_000767133.1\|4842114_4842504_+	RusA family crossover junction endodeoxyribonuclease	A5LH74	Enterobacteria_phage	1.6e-68	99.2
WP_023908880.1\|4842523_4843333_+	KilA-N domain-containing protein	A5LH75	Enterobacteria_phage	8.2e-152	99.6
WP_024946498.1\|4843340_4844330_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	6.2e-194	99.1
WP_023908878.1\|4844343_4845096_+	antitermination protein	K7PGU5	Enterobacteria_phage	4.2e-134	97.2
WP_001181554.1\|4845288_4845492_+	hypothetical protein	NA	NA	NA	NA
WP_024946499.1\|4845621_4845957_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	2.5e-54	93.7
WP_021543581.1\|4845960_4846437_+	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	6.2e-83	94.3
WP_023908876.1\|4846433_4846877_+\|lysis	lysis protein	M1FJ79	Enterobacteria_phage	2.3e-71	94.6
WP_021543580.1\|4846915_4847290_+	hypothetical protein	M1FPD9	Enterobacteria_phage	1.8e-61	96.0
WP_000699783.1\|4847407_4847611_+	hypothetical protein	A0A1W6JPG4	Morganella_phage	4.9e-13	52.9
WP_024946501.1\|4847676_4848027_+	HNH endonuclease	M1FQV2	Enterobacteria_phage	1.2e-62	96.6
WP_000929184.1\|4848153_4848648_+\|terminase	phage terminase small subunit P27 family	U5P067	Shigella_phage	2.3e-88	100.0
WP_065312442.1\|4848881_4850378_+\|terminase	terminase large subunit	A0A1C9IIA1	Salmonella_phage	1.7e-299	99.6
WP_000605605.1\|4850389_4850572_+	hypothetical protein	S5FXQ9	Shigella_phage	3.8e-25	98.3
WP_023908874.1\|4850571_4851813_+\|portal	phage portal protein	U5P411	Shigella_phage	2.9e-241	99.0
WP_001193633.1\|4851790_4852441_+\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	7.3e-119	99.5
WP_023908873.1\|4852455_4853661_+\|capsid	phage major capsid protein	A0A1B5FPI9	Escherichia_phage	1.7e-222	99.0
WP_023908872.1\|4853710_4853899_+	hypothetical protein	A0A1B5FP98	Escherichia_phage	8.8e-25	93.5
WP_021543573.1\|4853910_4854216_+\|head,tail	phage gp6-like head-tail connector protein	A0A1B5FP86	Escherichia_phage	3.9e-38	87.1
WP_021543572.1\|4854225_4854564_+\|head	phage head closure protein	A0A1B5FP90	Escherichia_phage	4.6e-48	84.8
WP_021543571.1\|4854560_4855010_+	HK97 gp10 family phage protein	S4TR46	Salmonella_phage	1.3e-61	78.5
4854564:4854579	attL	NA	NA	NA	NA
WP_021543570.1\|4855006_4855351_+	DUF3168 domain-containing protein	A0A1B5FP84	Escherichia_phage	1.9e-54	94.7
WP_023908871.1\|4855410_4856115_+	immunoglobulin domain-containing protein	A0A1B5FP82	Escherichia_phage	1.8e-110	90.6
WP_021543568.1\|4856129_4856501_+	hypothetical protein	A0A1B5FP91	Escherichia_phage	3.1e-58	90.2
WP_021543567.1\|4856524_4856803_+	DUF4035 domain-containing protein	A0A1B5FP87	Escherichia_phage	1.5e-33	80.4
WP_021543566.1\|4856861_4857203_+	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	7.6e-35	64.5
WP_024946502.1\|4857248_4860491_+\|tail	phage tail tape measure protein	A0A1B5FPE2	Escherichia_phage	0.0e+00	88.8
WP_023908869.1\|4860483_4860825_+\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	7.9e-40	66.4
WP_021543563.1\|4860824_4861523_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	1.8e-131	98.3
WP_032152077.1\|4861527_4862271_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.4e-152	99.2
WP_000741576.1\|4862168_4862816_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.7e-113	98.6
WP_038432220.1\|4862876_4866356_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.0
WP_001228252.1\|4866423_4867023_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	3.4e-102	92.5
WP_022646430.1\|4867087_4869436_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0E3M0V5	Enterobacteria_phage	9.5e-92	46.3
WP_022646431.1\|4869432_4869714_+	hypothetical protein	A0A1X7QHA1	Escherichia_phage	4.1e-18	50.0
WP_001595444.1\|4869723_4870428_+\|tail	tail fiber domain-containing protein	A0A1X7QGH6	Escherichia_phage	7.0e-59	61.7
WP_022646432.1\|4870438_4870726_+	hypothetical protein	NA	NA	NA	NA
WP_001217539.1\|4870836_4871085_-	DinI-like family protein	A5LH55	Enterobacteria_phage	1.1e-38	100.0
WP_000332260.1\|4871146_4872244_-\|integrase	site-specific integrase	S5MDN5	Escherichia_phage	4.0e-210	99.2
WP_000543825.1\|4872332_4873370_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_000891408.1\|4873503_4873746_+	envelope stress response protein PspG	NA	NA	NA	NA
WP_022646433.1\|4873911_4874895_-	quinone oxidoreductase	NA	NA	NA	NA
WP_000918363.1\|4874977_4876393_+	replicative DNA helicase	O80281	Escherichia_phage	4.8e-200	78.3
4875817:4875832	attR	NA	NA	NA	NA

DBSCAN-SWA_13

5067459 : 5132669

Vibrio_phage(21.43%)

tRNA,integrase,protease,capsid,transposase,holin

attL 5106054:5106096|attR 5118457:5118499

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001162184.1\|5067459_5068812_+\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_001232255.1\|5068866_5069253_+	cytochrome b562	NA	NA	NA	NA
WP_001106226.1\|5069297_5069762_-	anaerobic ribonucleoside-triphosphate reductase-activating protein	H6WXC9	Vibrio_phage	2.5e-52	59.7
WP_000187791.1\|5069921_5072060_-	anaerobic ribonucleoside-triphosphate reductase	A0A2I7QNQ7	Vibrio_phage	9.1e-267	64.6
WP_038432234.1\|5072453_5074109_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_001299664.1\|5074158_5075580_-	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA
WP_001181324.1\|5075698_5076646_-	HTH-type transcriptional regulator TreR	C6ZCU4	Enterobacteria_phage	7.9e-13	21.8
WP_001387276.1\|5076830_5076884_+	mgtA regulatory leader peptide MgtL	NA	NA	NA	NA
WP_000471866.1\|5077024_5079721_+	magnesium-translocating P-type ATPase	M1HLC0	Paramecium_bursaria_Chlorella_virus	9.0e-46	27.4
WP_000047539.1\|5079926_5080313_-	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA
WP_000148581.1\|5080385_5080847_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA
WP_000013046.1\|5080859_5081795_-	aspartate carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	2.9e-52	40.2
WP_001296693.1\|5081798_5081933_-	pyr operon leader peptide	NA	NA	NA	NA
WP_000230276.1\|5082213_5082609_-	RidA family protein	NA	NA	NA	NA
WP_000500698.1\|5082739_5083453_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_000256673.1\|5083523_5084117_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001305652.1\|5084261_5084714_+	toxin-antitoxin biofilm protein TabA	NA	NA	NA	NA
WP_038432236.1\|5084836_5086759_+	hypothetical protein	NA	NA	NA	NA
WP_000012914.1\|5086815_5087820_-	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_000002953.1\|5087981_5088398_+	ribonuclease E inhibitor RraB	NA	NA	NA	NA
WP_001059402.1\|5088542_5089046_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_023908893.1\|5089237_5090434_+	DUF898 domain-containing protein	NA	NA	NA	NA
WP_000416392.1\|5090489_5093345_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.8e-140	36.7
WP_000786399.1\|5093344_5093788_-	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_000397144.1\|5094046_5095558_-	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	6.0e-47	38.0
WP_000584117.1\|5095824_5096925_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_001295681.1\|5096924_5098007_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_038432237.1\|5098167_5099670_-	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	4.6e-84	44.2
WP_001309159.1\|5099747_5100746_-	DNA-binding transcriptional regulator IdnR	NA	NA	NA	NA
WP_001128335.1\|5100812_5102132_-	gnt-II system L-idonate transporter	NA	NA	NA	NA
WP_000998695.1\|5102193_5102958_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_001197411.1\|5102981_5104013_-	L-idonate 5-dehydrogenase	NA	NA	NA	NA
WP_000896738.1\|5104229_5104793_+	gluconokinase	NA	NA	NA	NA
WP_001309160.1\|5104796_5105816_-	NADPH-dependent aldehyde reductase Ahr	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	1.1e-44	30.7
5106054:5106096	attL	NA	NA	NA	NA
WP_001007918.1\|5106706_5107006_+	hypothetical protein	NA	NA	NA	NA
WP_038432238.1\|5107444_5107984_-	recombinase family protein	Q2A092	Sodalis_phage	6.4e-28	43.0
WP_038432108.1\|5109987_5110176_+	hypothetical protein	NA	NA	NA	NA
WP_000005056.1\|5110195_5110363_+	hypothetical protein	NA	NA	NA	NA
WP_038432107.1\|5110416_5111202_+	transcriptional regulator	NA	NA	NA	NA
WP_038432106.1\|5111399_5111810_+	hypothetical protein	NA	NA	NA	NA
WP_033557919.1\|5111811_5112150_+	hypothetical protein	NA	NA	NA	NA
WP_000898164.1\|5112479_5112692_+	hypothetical protein	NA	NA	NA	NA
WP_038432102.1\|5112688_5113051_+	hypothetical protein	NA	NA	NA	NA
WP_038432241.1\|5113069_5114098_+\|capsid	major capsid protein	NA	NA	NA	NA
WP_071884075.1\|5114184_5114388_+	hypothetical protein	NA	NA	NA	NA
WP_038432243.1\|5114402_5116235_+	hypothetical protein	I7HJD8	Enterobacteria_phage	1.2e-30	29.8
WP_038432097.1\|5116269_5116983_+	hypothetical protein	I7I023	Enterobacteria_phage	2.7e-50	50.2
WP_038432244.1\|5117064_5118336_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_000050905.1\|5122605_5122749_+	hypothetical protein	NA	NA	NA	NA
5118457:5118499	attR	NA	NA	NA	NA
WP_000483767.1\|5122776_5124123_-\|transposase	IS4-like element IS4 family transposase	NA	NA	NA	NA
WP_000179691.1\|5124731_5125949_+	MFS transporter	NA	NA	NA	NA
WP_000611568.1\|5125960_5127079_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_000594405.1\|5127121_5127247_+	hypothetical protein	NA	NA	NA	NA
WP_000254999.1\|5127299_5127557_-	hypothetical protein	NA	NA	NA	NA
WP_001254932.1\|5128194_5129346_+\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
WP_000625671.1\|5130195_5130609_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_001293436.1\|5130671_5132669_-\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	7.4e-21	25.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP009862

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 64377

Escherichia_phage(20.0%)

transposase,integrase

attL 23562:23621|attR 60207:60816

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001749988.1\|2132_2702_-	recombinase family protein	E5FFF9	Burkholderia_phage	5.2e-36	43.2
WP_000845048.1\|3094_4108_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_004201280.1\|4263_4737_+	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	8.4e-16	28.9
WP_001144737.1\|4957_5224_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_001389365.1\|5366_6131_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_004098817.1\|6391_7606_+	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
WP_072094655.1\|7639_9043_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	9.0e-106	50.6
WP_001749967.1\|9454_9661_-	hypothetical protein	NA	NA	NA	NA
WP_064577928.1\|9665_10154_-	restriction endonuclease	NA	NA	NA	NA
WP_001452736.1\|10362_10674_-	hypothetical protein	NA	NA	NA	NA
WP_001749965.1\|10709_11024_-	KikA protein	NA	NA	NA	NA
WP_001749964.1\|11020_11365_-	hypothetical protein	NA	NA	NA	NA
WP_024129965.1\|11380_11731_-	H-NS histone family protein	NA	NA	NA	NA
WP_001749963.1\|11794_12529_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_000440698.1\|12537_12819_+	hypothetical protein	NA	NA	NA	NA
WP_001749962.1\|12828_13122_+	hypothetical protein	NA	NA	NA	NA
WP_000496058.1\|13171_13489_+	VirB3 family type IV secretion system protein	NA	NA	NA	NA
WP_040123405.1\|13488_16089_+	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
WP_001749960.1\|16106_16820_+	hypothetical protein	NA	NA	NA	NA
WP_001749959.1\|16827_17055_+	IncN-type entry exclusion lipoprotein EexN	NA	NA	NA	NA
WP_001749958.1\|17070_18111_+	type IV secretion system protein	NA	NA	NA	NA
WP_001257173.1\|18193_18340_+	conjugal transfer protein TraN	NA	NA	NA	NA
WP_000646594.1\|18329_19028_+	type IV secretion system protein	NA	NA	NA	NA
WP_000735066.1\|19038_19923_+	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA
WP_000101710.1\|19922_21083_+	type IV secretion system protein VirB10	NA	NA	NA	NA
WP_000128596.1\|21124_22120_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_000792636.1\|22119_22653_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	5.8e-21	33.9
WP_002210551.1\|22826_22955_-	hypothetical protein	NA	NA	NA	NA
23562:23621	attL	NA	NA	NA	NA
WP_004152397.1\|26670_27990_+\|transposase	IS1182-like element ISKpn6 family transposase	Q9MBP7	Staphylococcus_prophage	1.9e-12	24.2
WP_004199234.1\|28239_29121_-	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
WP_004152394.1\|29507_30287_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.5e-89	61.8
WP_004199214.1\|30283_31309_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-87	50.3
WP_004152392.1\|31415_34445_-\|transposase	IS3-like element Tn4401 family transposase	NA	NA	NA	NA
WP_004152391.1\|34554_36270_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_001217881.1\|37384_37942_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4
WP_014454105.1\|38175_38730_+	aminoglycoside N-acetyltransferase AAC(6')-Ib'	NA	NA	NA	NA
WP_001206315.1\|38799_39588_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_000722315.1\|39647_40472_+	oxacillin-hydrolyzing class D beta-lactamase OXA-9	NA	NA	NA	NA
WP_000027057.1\|41171_42032_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001166628.1\|43504_43960_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_001294660.1\|44031_44382_+	mercuric transport protein MerT	NA	NA	NA	NA
WP_000732276.1\|44397_44673_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_000522993.1\|44700_45108_+	organomercurial transporter MerC	NA	NA	NA	NA
WP_000281123.1\|45146_46829_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.9e-38	27.8
WP_001277463.1\|46846_47212_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_001087807.1\|47208_47445_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_000993245.1\|47510_47723_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_001162012.1\|47852_48410_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
WP_001138073.1\|48412_51385_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.1
WP_000427619.1\|51463_52468_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000480968.1\|53394_54231_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_001082319.1\|54230_55034_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_001043260.1\|55094_55910_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_000954592.1\|56239_56416_+	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_000427619.1\|56597_57602_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_001067855.1\|59498_60203_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_012561167.1\|60775_61141_-	hypothetical protein	NA	NA	NA	NA
60207:60816	attR	NA	NA	NA	NA
WP_012561166.1\|61140_64377_-	conjugative relaxase	U5J9B0	Bacillus_phage	2.4e-05	27.3

DBSCAN-SWA_2

76091 : 77785

Morganella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000861760.1\|76091_76532_+	translesion error-prone DNA polymerase V autoproteolytic subunit MucA	A0A1W6JNS2	Morganella_phage	1.2e-27	48.8
WP_001749980.1\|76519_77785_+	translesion error-prone DNA polymerase V subunit MucB	F1C5A5	Cronobacter_phage	2.2e-119	53.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009860

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009861

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP009859

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP009862

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection