CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP009874	Klebsiella pneumoniae subsp. pneumoniae strain KPNIH30 plasmid pKPN-b9c, complete sequence	0 crisprs	NA	0	4
NZ_CP009873	Klebsiella pneumoniae subsp. pneumoniae strain KPNIH30 plasmid pKPN-294, complete sequence	0 crisprs	NA	0	0
NZ_CP009875	Klebsiella pneumoniae subsp. pneumoniae strain KPNIH30 plasmid pKpQIL-531, complete sequence	0 crisprs	NA	0	2
NZ_CP009872	Klebsiella pneumoniae subsp. pneumoniae strain KPNIH30 chromosome, complete genome	3 crisprs	cas3,DEDDh,WYL,RT,DinG,csa3	1	11

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 14855

Bodo_saltans_virus(16.67%)

integrase,transposase

attL 2480:2492|attR 11787:11799

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040120352.1\|1832_6692_+	DEAD/DEAH box helicase	A0A2H4UTW8	Bodo_saltans_virus	3.9e-39	26.8
2480:2492	attL	NA	NA	NA	NA
WP_001749988.1\|7548_8118_-	recombinase family protein	E5FFF9	Burkholderia_phage	5.2e-36	43.2
WP_000845048.1\|8454_9468_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000777554.1\|9624_10098_+	trimethoprim-resistant dihydrofolate reductase DfrA1	G3MBI7	Bacillus_virus	3.7e-19	32.1
WP_040120353.1\|10199_10745_+	hypothetical protein	NA	NA	NA	NA
WP_040120354.1\|10820_11612_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_000679427.1\|11775_12123_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
11787:11799	attR	NA	NA	NA	NA
WP_000259031.1\|12116_12956_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000376623.1\|13083_13584_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001389365.1\|14090_14855_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7

DBSCAN-SWA_2

28092 : 28626

Wolbachia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000792636.1\|28092_28626_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	5.8e-21	33.9

DBSCAN-SWA_3

38407 : 38641

Klebsiella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048271356.1\|38407_38641_+	hypothetical protein	Q6UAT7	Klebsiella_phage	7.3e-05	45.5

DBSCAN-SWA_4

45956 : 47650

Morganella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000861760.1\|45956_46397_+	translesion error-prone DNA polymerase V autoproteolytic subunit MucA	A0A1W6JNS2	Morganella_phage	1.2e-27	48.8
WP_016359299.1\|46384_47650_+	translesion error-prone DNA polymerase V subunit MucB	F1C5A5	Cronobacter_phage	4.4e-120	54.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009875

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

10758 : 42817

Escherichia_phage(25.0%)

transposase,integrase

attL 17251:17268|attR 52015:52032

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152392.1\|10758_13788_+\|transposase	Tn3-like element Tn4401 family transposase	NA	NA	NA	NA
WP_004199214.1\|13894_14920_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-87	50.3
WP_004152394.1\|14916_15696_+	IS21-like element ISKpn7 family helper ATPase IstB	A0A2L1IVB6	Escherichia_phage	2.5e-89	61.8
WP_004199234.1\|15983_16865_+	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
WP_004152397.1\|17114_18434_-\|transposase	IS1182-like element ISKpn6 family transposase	Q9MBP7	Staphylococcus_prophage	1.9e-12	24.2
17251:17268	attL	NA	NA	NA	NA
WP_004152398.1\|18710_19895_-\|transposase	ISAs1-like element ISKpn31 family transposase	NA	NA	NA	NA
WP_004152400.1\|20398_20758_+	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	3.6e-19	62.0
WP_004152401.1\|21414_21825_-	hypothetical protein	NA	NA	NA	NA
WP_004152402.1\|21923_22544_-	recombinase family protein	A0A219Y912	Aeromonas_phage	2.0e-09	31.5
WP_004152403.1\|22632_25530_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	2.7e-181	37.7
WP_001067855.1\|25602_26307_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000027057.1\|28050_28911_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001300294.1\|30821_31490_-	EAL domain-containing protein	NA	NA	NA	NA
WP_000993386.1\|31525_31762_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001277456.1\|31758_32121_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000105636.1\|32138_33833_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
WP_001340589.1\|33884_34307_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_072093211.1\|34342_34468_-	mercury transporter	NA	NA	NA	NA
WP_004152334.1\|35199_35910_-	AAA family ATPase	NA	NA	NA	NA
WP_001044770.1\|35983_36400_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_001261282.1\|36396_36627_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_072093212.1\|36583_37045_+	hypothetical protein	NA	NA	NA	NA
WP_004153649.1\|37279_37486_+	hypothetical protein	NA	NA	NA	NA
WP_004152336.1\|37531_37840_+	hypothetical protein	NA	NA	NA	NA
WP_004152337.1\|37867_38197_+	hypothetical protein	NA	NA	NA	NA
WP_004171440.1\|38222_38621_+	hypothetical protein	NA	NA	NA	NA
WP_004152339.1\|38627_38960_+	hypothetical protein	NA	NA	NA	NA
WP_004152340.1\|38959_39742_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	4.6e-51	90.2
WP_011977773.1\|40633_40864_-	hypothetical protein	NA	NA	NA	NA
WP_004152341.1\|40955_41429_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_004152342.1\|41548_42817_-\|transposase	ISL3-like element ISKpn25 family transposase	Q6V7R1	Burkholderia_virus	5.2e-60	34.7
52015:52032	attR	NA	NA	NA	NA

DBSCAN-SWA_2

47392 : 59484

Enterobacteria_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152345.1\|47392_49420_-	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	2.1e-26	26.6
WP_004227314.1\|49531_49747_-	hypothetical protein	NA	NA	NA	NA
WP_004152347.1\|49971_50304_-	hypothetical protein	NA	NA	NA	NA
WP_004152348.1\|50680_51655_-	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	1.4e-105	62.3
WP_004152349.1\|51651_52857_-	AAA family ATPase	Q1MVJ3	Enterobacteria_phage	7.3e-205	89.0
WP_004152350.1\|53178_54075_-	replication initiation protein	Q71TL8	Escherichia_phage	3.3e-69	53.8
WP_004152351.1\|54475_55747_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	3.6e-154	63.7
WP_004152352.1\|55746_56178_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.0e-28	52.5
WP_004152353.1\|56409_57381_+	mediator of plasmid stability	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
WP_004152354.1\|57383_58055_+	plasmid partitioning/stability family protein	NA	NA	NA	NA
WP_001568040.1\|58115_58346_+	hypothetical protein	NA	NA	NA	NA
WP_004152355.1\|58782_59484_+	DNA methylase	A0A2I7RE86	Vibrio_phage	7.1e-27	36.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP009872

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009872_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009872_1

813115-813200

Orphan

Consensus_repeat	Method
AATAAAAACCATAAAAACCACAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009872_1

>merge|NZ_CP009872|1|813115-813200|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGTCATAAATCAGAGATATATCACTCCCGGGCAGTTCAGCGAATAAAAACCATAAAAACCATAGT

>NZ_CP009872|1|1|813115-813200|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGT	CATAAATCAGAGATATATCACTCCCGGGCAGTTCAGCG
AATAAAAACCATAAAAACCATAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009872.1\|WP_002888320.1\|802085_802565_+\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP009872.1\|WP_002888370.1\|826147_826993_+\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP009872.1\|WP_002888347.1\|814841_815381_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP009872.1\|WP_002888349.1\|819221_821579_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP009872.1\|WP_002888324.1\|804053_804875_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP009872.1\|WP_002888340.1\|811347_812973_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP009872.1\|WP_002888353.1\|821754_822450_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP009872.1\|WP_002888323.1\|803673_804051_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP009872.1\|WP_004151368.1\|816127_819034_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP009872.1\|WP_004147026.1\|807207_809556_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP009872.1\|WP_002888357.1\|822587_824090_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP009872.1\|WP_002888321.1\|802820_803669_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH	unknown	unknown	gnl\|CDD\|273208
NZ_CP009872.1\|WP_002888368.1\|824100_825810_-\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP009872.1\|WP_002888373.1\|827121_827889_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP009872.1\|WP_002888332.1\|809799_810627_+\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP009872.1\|WP_002888329.1\|805866_807153_-\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP009872.1\|WP_002888345.1\|813297_814662_+\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP009872.1\|WP_002888348.1\|815455_816115_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP009872.1\|WP_002888337.1\|810659_811358_-\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP009872.1\|WP_002888327.1\|804871_805861_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696

Protein	Function_ID	Function_description	E-value
NZ_CP009872.1\|WP_002888320.1\|802085_802565_+\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP009872.1\|WP_002888370.1\|826147_826993_+\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP009872.1\|WP_002888347.1\|814841_815381_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP009872.1\|WP_002888349.1\|819221_821579_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP009872.1\|WP_002888324.1\|804053_804875_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP009872.1\|WP_002888340.1\|811347_812973_-\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
NZ_CP009872.1\|WP_002888353.1\|821754_822450_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP009872.1\|WP_002888323.1\|803673_804051_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP009872.1\|WP_004151368.1\|816127_819034_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP009872.1\|WP_004147026.1\|807207_809556_-\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP009872.1\|WP_002888357.1\|822587_824090_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP009872.1\|WP_002888321.1\|802820_803669_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP009872.1\|WP_002888368.1\|824100_825810_-\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP009872.1\|WP_002888373.1\|827121_827889_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48
NZ_CP009872.1\|WP_002888332.1\|809799_810627_+\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP009872.1\|WP_002888329.1\|805866_807153_-\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP009872.1\|WP_002888345.1\|813297_814662_+\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP009872.1\|WP_002888348.1\|815455_816115_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP009872.1\|WP_002888337.1\|810659_811358_-\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP009872.1\|WP_002888327.1\|804871_805861_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0

>NZ_CP009872.1|WP_002888340.1|811347_812973_-|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NZ_CP009872.1|WP_002888337.1|810659_811358_-|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP009872.1|WP_002888332.1|809799_810627_+|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP009872.1|WP_004147026.1|807207_809556_-|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP009872.1|WP_002888329.1|805866_807153_-|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP009872.1|WP_002888327.1|804871_805861_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP009872.1|WP_002888324.1|804053_804875_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP009872.1|WP_002888323.1|803673_804051_-|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP009872.1|WP_002888321.1|802820_803669_-|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP009872.1|WP_002888320.1|802085_802565_+|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP009872.1|WP_002888345.1|813297_814662_+|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP009872.1|WP_002888347.1|814841_815381_+|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP009872.1|WP_002888348.1|815455_816115_-|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP009872.1|WP_004151368.1|816127_819034_-|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAGIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP009872.1|WP_002888349.1|819221_821579_-|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSHVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP009872.1|WP_002888353.1|821754_822450_-|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP009872.1|WP_002888357.1|822587_824090_-|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATVEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP009872.1|WP_002888368.1|824100_825810_-|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSKAALTH
>NZ_CP009872.1|WP_002888370.1|826147_826993_+|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVREACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP009872.1|WP_002888373.1|827121_827889_+|DedA-family-protein
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR

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Crispr_ID: NZ_CP009872_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009872_2

1278078-1278173

Orphan

Consensus_repeat	Method
TTGTGCCAACAGAATGCCAACAAAGTGCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009872_2

>merge|NZ_CP009872|2|1278078-1278173|CRISPRCasFinder
TTGTGCCAACAGAATGCCAACAAAGTGCCAACGCAAACCCAGTAACCACGCTGCGTACCGGCGAGGTTGTGCCAACAGAATGCCAACAAAGTGCCA

>NZ_CP009872|2|2|1278078-1278173|CRISPRCasFinder
TTGTGCCAACAGAATGCCAACAAAGTGCCA	ACGCAAACCCAGTAACCACGCTGCGTACCGGCGAGG
TTGTGCCAACAGAATGCCAACAAAGTGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009872.1\|WP_004151300.1\|1276146_1276836_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP009872.1\|WP_004151298.1\|1277544_1277691_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009872.1\|WP_004151285.1\|1284318_1284456_+\|YlcG-family-protein	unknown	unknown	unknown
NZ_CP009872.1\|WP_004151295.1\|1280002_1280296_+\|protein-ren	unknown	unknown	gnl\|CDD\|238042
NZ_CP009872.1\|WP_001548453.1\|1277237_1277459_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|336083
NZ_CP009872.1\|WP_032441738.1\|1274052_1274898_-\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
NZ_CP009872.1\|WP_004151306.1\|1273375_1274056_-\|YqaJ-viral-recombinase-family-protein	unknown	unknown	gnl\|CDD\|378216
NZ_CP009872.1\|WP_004151286.1\|1283686_1284322_+\|recombination-protein-NinG	unknown	unknown	gnl\|CDD\|368603
NZ_CP009872.1\|WP_187073836.1\|1278587_1280003_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274672
NZ_CP009872.1\|WP_004151294.1\|1280292_1280799_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009872.1\|WP_004151303.1\|1275286_1275481_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009872.1\|WP_004151299.1\|1276963_1277197_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP009872.1\|WP_004151302.1\|1275473_1275584_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009872.1\|WP_004151292.1\|1281747_1281924_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009872.1\|WP_004151288.1\|1283068_1283524_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182057
NZ_CP009872.1\|WP_004151304.1\|1274913_1275198_-\|host-nuclease-inhibitor-GamL	unknown	unknown	unknown
NZ_CP009872.1\|WP_004151291.1\|1281920_1282568_+\|DUF551-domain-containing-protein	unknown	unknown	gnl\|CDD\|367946
NZ_CP009872.1\|WP_004151287.1\|1283523_1283694_+\|NinE-family-protein	unknown	unknown	gnl\|CDD\|182029
NZ_CP009872.1\|WP_004151301.1\|1275580_1275796_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009872.1\|WP_004151293.1\|1280905_1281748_+\|ead/Ea22-like-family-protein	unknown	unknown	gnl\|CDD\|379401

Protein	Function_ID	Function_description	E-value
NZ_CP009872.1\|WP_004151300.1\|1276146_1276836_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	1.58097e-27
NZ_CP009872.1\|WP_032441738.1\|1274052_1274898_-\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	5.28003e-34
NZ_CP009872.1\|WP_004151293.1\|1280905_1281748_+\|ead/Ea22-like-family-protein	gnl\|CDD\|379401	pfam13935, Ead_Ea22, Ead/Ea22-like protein. This family contains phage proteins and bacterial proteins that are likely to represent integrated phage proteins. This family includes the Lambda phage Ea22 early protein as well as the Bacteriophage P22 Ead protein.	0.000117969
NZ_CP009872.1\|WP_001548453.1\|1277237_1277459_+\|hypothetical-protein	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	1.55058e-09
NZ_CP009872.1\|WP_004151306.1\|1273375_1274056_-\|YqaJ-viral-recombinase-family-protein	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	1.68114e-32
NZ_CP009872.1\|WP_187073836.1\|1278587_1280003_+\|AAA-family-ATPase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	4.0356e-157
NZ_CP009872.1\|WP_004151286.1\|1283686_1284322_+\|recombination-protein-NinG	gnl\|CDD\|368603	pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway.	9.44908e-60
NZ_CP009872.1\|WP_004151299.1\|1276963_1277197_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	9.32854e-22
NZ_CP009872.1\|WP_004151295.1\|1280002_1280296_+\|protein-ren	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	0.000668668
NZ_CP009872.1\|WP_004151288.1\|1283068_1283524_+\|hypothetical-protein	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	1.50704e-78
NZ_CP009872.1\|WP_004151291.1\|1281920_1282568_+\|DUF551-domain-containing-protein	gnl\|CDD\|367946	pfam04448, DUF551, Protein of unknown function (DUF551). This family represents the carboxy terminus of a protein of unknown function, found in dsDNA viruses with no RNA stage, including bacteriophages lambda and P22, and also in some Escherichia coli prophages.	8.71432e-11
NZ_CP009872.1\|WP_004151287.1\|1283523_1283694_+\|NinE-family-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	1.47696e-19

>NZ_CP009872.1|WP_004151298.1|1277544_1277691_+|hypothetical-protein
MPKSNRFYQAQTHKNVTRDRFIRSVNPVVGMKMRAILEELKRKEEGRE
>NZ_CP009872.1|WP_001548453.1|1277237_1277459_+|hypothetical-protein
MESSTTRNKVEARRIESWLHSQIAELGTTNIAKVAGVNKSTVSRWRESLLPNMSLLLAILISNRPGEKGDFEA
>NZ_CP009872.1|WP_004151299.1|1276963_1277197_+|helix-turn-helix-domain-containing-protein
MKNPAVEKAISIAGSQKELAKRCGKAQSTICDWLNGKKRISPVHVPDLVAAVNGEIKAYEFRPDLPSIFPPPNNSAA
>NZ_CP009872.1|WP_004151300.1|1276146_1276836_-|helix-turn-helix-transcriptional-regulator
MDFSERLARAMSLAGYTQGRLAKEVGMAQSSVNKLLNGANGSRKTVEIASVLGVRPEWLSTGAGEMLADSIQITQMQTPVTPQNGIYRVDVLDVKASAGPGALITNDFIETIRAIEYTSEQARSLFGNRPAHHIKVITVTGDSMDTTISPGDEIFVDISSTHFDSDGVYVFVFGKTLHVKRLQMQRDRLAVISDNPIYEKWYVEPGDEDQFYVMARVLLRQSIEYKRFA
>NZ_CP009872.1|WP_004151301.1|1275580_1275796_-|hypothetical-protein
MSKENNGGPAYPTQGYEGLTVRDYFAAKAMQGWLAGYPAGINHPARSEEGFTVAELSYLMADAMLKAREEV
>NZ_CP009872.1|WP_004151302.1|1275473_1275584_-|hypothetical-protein
MSKQGIRSLIYCLLICGVIWSAVVIKILHATGVFNG
>NZ_CP009872.1|WP_004151303.1|1275286_1275481_-|hypothetical-protein
MANSIPNNGRAVMMRNRRTGAAWLVSFDYRDGSYWHEPQGNLRHIRRPYASRSIEPNLVPAGTH
>NZ_CP009872.1|WP_004151304.1|1274913_1275198_-|host-nuclease-inhibitor-GamL
MNAYRAYDVIEERKWAEQTLTEEKQKWIEDRAKEVFDSLPEDPYAALRQSVSSKSFPYEGLRSDKAGEVYNDLRTAIAYAQAEYDWDHRTGCPF
>NZ_CP009872.1|WP_032441738.1|1274052_1274898_-|phage-recombination-protein-Bet
MANELVITASSLAERGIDGATWSALKNSIYPGAKDESVMMALDYCRARNLDPLLKPVHLVPMSVKDSKSGKSEWRDVVMPSIGLYRIQADRSGDYAGAKEPEFGPDVTLTLTGIEVTVPQWCKYTVSKRMPSGEIVEFSAKEYWVENYATAGRDTTAPNAMWKKRPYGQLAKCAEAQALRKAWPEIGQQPTAEEMEGKTLEVDARDVTPRSTPEAPPLVASEETLQAITDLLTSLNKDWEQDFLPLCSNIFKRDIFQASQLTEEEAQKGFSFLQKKAQVAA
>NZ_CP009872.1|WP_004151306.1|1273375_1274056_-|YqaJ-viral-recombinase-family-protein
MTPEIILERTGIDVTRVEQGDESWHRLRLGVITASEVHNVISKPKSGKKWTDMKMSYFLTLLAEVCTGVAPEVNAKALAWGKQYEADARTLFEFTTDVKVTESPILFRDEGMRTACSPDGLCSDGRGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQFSMWVTGKDAWYFANYDPRMKREGIHHVVVERDDKYMSDFNEMVPEFISKMDESLAEIGFTFGEQWK
>NZ_CP009872.1|WP_187073836.1|1278587_1280003_+|AAA-family-ATPase
MTPPHSIEAEQSVLGGLLLDDDNSERTQKVLSILKPESFYARPHQVIFAEMRQMYRDHKPVDLLTLFDALESKGLTETVGGFAYLAEMSKNTPSAANIVAYAMRVRETAMERYGIEKTTKAIELLYARNGMTAEQKFDAIQGLFTEITEHVKTGRRTGLRTFYDAVTDWSAEFDERLKPDGRSRGLSTGIRSLDELLGVKRIVRGSLFVIGARPKMGKTTLYTQMGINCATVENEPALMFSLEMPEGQMVEKITAQKGRISPNLFYPDMTKDDYGYRGDWNSDLQKATGVMGALIETNNLLIDDTPGISLAHVMAESRRIKRERGKVGMILVDYLTLMTADKAERNDLAYGLITKGLKILAKELDCVVVLLTQLNRDLEKRTNKRPLPSDSRDTGQIELDCDYWLAIYREGAYDENANQSDTELLLRLNRHGETGVVYCEQRHGAIYDCDQEAASQRRREKEQKPTKRGGF
>NZ_CP009872.1|WP_004151295.1|1280002_1280296_+|protein-ren
MTGKDAILNYLKTHKTCSSPDVAAASGMTHTCINQAANILAKQGVLVAEARVWRTVYYRLATEEEIAGRKSTNQIFNECRQSPAMKRVLAVYGRTSA
>NZ_CP009872.1|WP_004151294.1|1280292_1280799_+|hypothetical-protein
MTITLQAVNKLIASMESAGELSIREQKFLKLAKEFRICSASLDAAIKTGNMLADQNAQLAAENVALKDINAWCKTDAFKNMYREFKTAEALGCSDADCMHDAMLVAIMHAPATPATDRIVAGIKADGVEEFAAKLRIPGDDQFFDALAKGIALAADDFAKQLREGADK
>NZ_CP009872.1|WP_004151293.1|1280905_1281748_+|ead/Ea22-like-family-protein
MTDITELAQSLKAAAEKASNGDWVKESGDGWEACCSANDQANGGFIIAHFVGPDAAENCEFVQAANPANVLALVEALEYYKSREERVTSLVRDNSKSWDELYRQVEAKGKRNVELVEALESEKRICATWRKTAESTSEKLEKAQAAERRWHRVASRVHEQACESDVKIDELEAIRAAAEKLVRCKGRYHSEQNYRALAALFGVNTPDLPPLEHENVHYADAAEMEIEALRQRIAELESRTVKLPPRVDSSNVPFAGNAWNCCLDEVEKRLTAAGIKMEAE
>NZ_CP009872.1|WP_004151292.1|1281747_1281924_+|hypothetical-protein
MAERWKIYLTIAFIGLGATPISMVAAKIDVPVWALIAGHCGATIAGFICAELGRGANQ
>NZ_CP009872.1|WP_004151291.1|1281920_1282568_+|DUF551-domain-containing-protein
MTNNQLAENSVIQLLNSVKLARDNAELADNRVDHSFYYALTIALEELQERRKAAMDSEPVLWAWHHLDMWHVTSHDGRARDLWLSGFKVIPLYRHAQPVLVIPDEMTAEQAYEIGYYYGDPVDVFARGANWMRQHIIDSTLAAAPQSPGSDPATVPGKWISVSERMPENDGAYLCWDNRYVTTYAFIFGAWQANQFIAKNITHWMPLPAGPQEVR
>NZ_CP009872.1|WP_004151288.1|1283068_1283524_+|hypothetical-protein
MNIPQCGIKLHNGNFSAIGKILQEQLSDGKCLRLQVKEWREKRSLSQNALSHMWYAEISEYLINSGRTDATPEWVKRNLKKTYLGCEEVTYTDFITGEKTTTWEPRHTSDLDTGEMHIFLTKVEAWCAQFGLALTIPHGCEYQQLQQKQEA
>NZ_CP009872.1|WP_004151287.1|1283523_1283694_+|NinE-family-protein
MSSLLAKVIERGIFRVPARRKRKVEDKPSDIPTLKDYTARLVDKKWLRLRARRPHA
>NZ_CP009872.1|WP_004151286.1|1283686_1284322_+|recombination-protein-NinG
MRKPARRKCAHCREWFHPAREGQVVCSFECASAIGKKQTAKAREAAKARAVKRQRESEKEGRQRRKARLAELRPNGYYKAQAQKAFNAYIRARDAALPCISCGETNPPDLHGGQWDCGHFKTVGAYPELRFEERNAHKQCKSCNAGAGKYTAKELTVAQQYEAGLVARYGQEYVDWLNGPHEMTNYRREDFIRIRDEYRAKLKALKQREAA
>NZ_CP009872.1|WP_004151285.1|1284318_1284456_+|YlcG-family-protein
MNHDIIERIRDRWKKLRLLRSRGTVLVDYLILRNFIASLSRGSYE

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Crispr_ID: NZ_CP009872_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009872_3

1663864-1663941

Orphan

Consensus_repeat	Method
AAGGCGTCAGCCGCCGCCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009872_3

>merge|NZ_CP009872|3|1663864-1663941|CRISPRCasFinder
AAGGCGTCAGCCGCCGCCCGGCAAAATAACCGCGCAATAGCACCGTAGGCCGGGCAAGGCGTCAGCCGCCGCCCGGCA

>NZ_CP009872|3|3|1663864-1663941|CRISPRCasFinder
AAGGCGTCAGCCGCCGCCCGGCA	AAATAACCGCGCAATAGCACCGTAGGCCGGGC
AAGGCGTCAGCCGCCGCCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009872.1\|WP_002895578.1\|1664640_1665930_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
NZ_CP009872.1\|WP_002895648.1\|1669069_1669792_+\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NZ_CP009872.1\|WP_002895284.1\|1652363_1653287_-\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|225813
NZ_CP009872.1\|WP_002895283.1\|1651840_1652347_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009872.1\|WP_004147672.1\|1661932_1663315_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182566
NZ_CP009872.1\|WP_014342949.1\|1659372_1660311_+\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
NZ_CP009872.1\|WP_002895358.1\|1657754_1658480_+\|histidine-utilization-repressor	unknown	unknown	gnl\|CDD\|184961
NZ_CP009872.1\|WP_004229842.1\|1651489_1651636_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009872.1\|WP_004142100.1\|1668321_1669077_+\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
NZ_CP009872.1\|WP_002895420.1\|1660307_1661834_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
NZ_CP009872.1\|WP_002895580.1\|1666143_1667184_+\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|185063
NZ_CP009872.1\|WP_004151696.1\|1653982_1655266_-\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
NZ_CP009872.1\|WP_002895652.1\|1670542_1670755_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009872.1\|WP_004151700.1\|1667180_1668338_+\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NZ_CP009872.1\|WP_004152853.1\|1669733_1670456_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223487
NZ_CP009872.1\|WP_004151698.1\|1656736_1657693_+\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|234974
NZ_CP009872.1\|WP_002895575.1\|1664093_1664570_-\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
NZ_CP009872.1\|WP_004153329.1\|1655420_1656740_+\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
NZ_CP009872.1\|WP_002895655.1\|1671166_1673188_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP009872.1\|WP_002895658.1\|1673436_1674534_-\|two-component-system-sensor-histidine-kinase-PmrB	unknown	unknown	gnl\|CDD\|236751

Protein	Function_ID	Function_description	E-value
NZ_CP009872.1\|WP_002895578.1\|1664640_1665930_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
NZ_CP009872.1\|WP_002895648.1\|1669069_1669792_+\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	4.52132e-105
NZ_CP009872.1\|WP_002895284.1\|1652363_1653287_-\|acyltransferase-family-protein	gnl\|CDD\|225813	COG3274, COG3274, Predicted O-acyltransferase [General function prediction only].	6.63632e-09
NZ_CP009872.1\|WP_002895358.1\|1657754_1658480_+\|histidine-utilization-repressor	gnl\|CDD\|184961	PRK14999, PRK14999, histidine utilization repressor; Provisional.	3.37417e-172
NZ_CP009872.1\|WP_014342949.1\|1659372_1660311_+\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NZ_CP009872.1\|WP_002895658.1\|1673436_1674534_-\|two-component-system-sensor-histidine-kinase-PmrB	gnl\|CDD\|236751	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB.	0
NZ_CP009872.1\|WP_004147672.1\|1661932_1663315_+\|amino-acid-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NZ_CP009872.1\|WP_004142100.1\|1668321_1669077_+\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	1.7976e-160
NZ_CP009872.1\|WP_002895420.1\|1660307_1661834_+\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
NZ_CP009872.1\|WP_002895580.1\|1666143_1667184_+\|biotin-synthase-BioB	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
NZ_CP009872.1\|WP_004151696.1\|1653982_1655266_-\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
NZ_CP009872.1\|WP_004151700.1\|1667180_1668338_+\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NZ_CP009872.1\|WP_004152853.1\|1669733_1670456_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	3.17026e-74
NZ_CP009872.1\|WP_004151698.1\|1656736_1657693_+\|formimidoylglutamase	gnl\|CDD\|234974	PRK01722, PRK01722, formimidoylglutamase; Provisional.	8.10638e-178
NZ_CP009872.1\|WP_002895575.1\|1664093_1664570_-\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	7.58373e-117
NZ_CP009872.1\|WP_004153329.1\|1655420_1656740_+\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
NZ_CP009872.1\|WP_002895655.1\|1671166_1673188_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0

>NZ_CP009872.1|WP_004147672.1|1661932_1663315_+|amino-acid-permease
MQQQHKPHLLRGLNARHIRFIALGSAIGTGLFYGSASAIKAAGPAVLLAYLIGGAAVFIVMRALGEMAVRNPVSGSFGSYARQYLGPLAGFITGWTYTFEMVIVALADVTAFGIYMGLWYPDVPRWIWILSIIFFIGAMNLCNVRVFGEMEFWLSLVKVVAIIAMMLAGAGIIFFGFGHSFPATGLENLWSHGGFAPNGWQGVIASLGIVMFAFGGVEIIGVTAAEAKDPKKVIPQAINTIPLRIILFYVCTLAVLMAIFPWNSFGEQGSPFVLIFDGLGIPAAATILNIIVISASISAINSDIFGAGRMMYGMSKEGLAPKSFQRIASNGVPWMTVVVMGGALLAAVVLNYLIPEQVFVLIASLAAFATVWVWLMILLSHFAMRRGLSAEERSQIAFPIPFWPVAPLLTLLFMGLVIAVLGMFAETRMALIAGLVWLGLLTVVWYARVRKTALQVATEQ
>NZ_CP009872.1|WP_002895420.1|1660307_1661834_+|histidine-ammonia-lyase
MKSLTLIPGQLSLSQLRDVYSHPVNITLDSGAFAAIDESVACVNAILAEGRTAYGINTGFGLLAQTRISTEDLENLQRSLVLSHAAGVGEPLDDDLTRLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLLGEGKARVRGGEWLPATEALRQVGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAALGSRRPFDARIHEVRGQRGQIDAAALYRHLLTDDSAISQSHHNCSKVQDPYSLRCQPQVMGACLTQIRQAAEVLLAEANAVSDNPLVFAAENDVISGGNFHAEPVAMAADNIALAIAEIGSLSERRIALMMDSHMSQLPPFLVKNGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGRRLWAMAENTRGVLAVEWLAAAQGLDMREGLTTSPLLEEARHLLRERVPHYTQDRYFAPDIDNAIALLAARHLTRLLPAVLH
>NZ_CP009872.1|WP_014342949.1|1659372_1660311_+|urocanate-hydratase
MKRGVRPDMVTDQTSAHDPLHGYLPKGWSWEEYQQKAESDPQGTILAAKRSMADHVQAMLAFHEMGVPTFDYGNNIRQMAQEVGVSNAFDFPGFVPAYIRPLFCRGIGPFRWVALSGDPQDIYKTDAKVKEIIKDDQHLHHWLDMARERISFQGLPARICWVGLEWRQKLGLAFNEMVRSGEVSAPIVIGRDHLDSGSVASPNRETEAMRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGMVIVCDGTDEAAARIARVLHNDPATGVMRHADAGYEIAIECAAEQGLNLPMVAATQGNAK
>NZ_CP009872.1|WP_002895358.1|1657754_1658480_+|histidine-utilization-repressor
MFAQQPRSAPAPFYEKVKQAISEKIHSGVWRPHDRIPSEAELVAQFGFSRMTINRALRELTDEGLLVRLQGVGTFVAEPKGQSALFEVRSIAAEIVARHHQHRCEVLLLEETRADHIQATALSVPEGTRIFHSLMVHYENEVPVQIEDRCVNAAVVPDYLHQDYTATTPHDYLSLIAPLTEGEHIVEAVQATAEECALLHIHAHDPCLLIRRRTWSTTHIVSHARLLFPGSRYRLQGRFGS
>NZ_CP009872.1|WP_004151698.1|1656736_1657693_+|formimidoylglutamase
MMLWQATPASLWQGRDDSAEAPNALRLFQTIVRAERFAPQEMPGDIALLGFACDEGVRRNKGRTGAADGPATLRRALANMASHQGHDRCVDMGTISVDGEQLEAAHQALREAVADCQRVGKRTLVLGGGHETAFGHGAGVLDAFPGEKVGIINLDAHLDLRFADCASSGTPFRQLALECDAQQRGFHYTCIGVSRAANTQALWDEAARRQVAIVEDLEVLTAFETRVLPELERNIAQFDRLYLTIDLDVLPAREMPAVSAPAALGVPLATLLRIVEPLCRNGKLQAVDLVEFNPLFDIDGQGARAAARLAWQIAHWWR
>NZ_CP009872.1|WP_004153329.1|1655420_1656740_+|imidazolonepropionase
MVFSHKKITFPCAIVDFTGVMKINVYTTHDKLSAMTEATSELVIWRNGRLATLNPDHAQPYGLLERHALLVRDGRIAAIVAEDDVPSGRSIDLEGRLVTPGLIDCHTHLVFGGSRAQEWEQRLNGVSYQTISASGGGINSTVRATRDSSEAELLALAQPRLERLLREGVTTLEIKSGYGLDLPNERKMLRVARQLADHNGVELSATLLSAHATPPEYQGDADGYITLVCETILPTLWQEGLFESVDVFCENVGFSPQQTERVFQAAQALGIPVKGHVEQLSSLGGAQLVSRYHGLSADHIEYLTEEGVAAMRESGTVAALLPGAFYFLNETRKPPVELLRKYQVPMAVATDFNPGTSPFASLHLAMNMACVKFGLTPEEAWAGVTRHAARALGRQASHGQLAPGFVANFAIWDAEHPVEMVYEPGRSPLWHRVVQGELQ
>NZ_CP009872.1|WP_004151696.1|1653982_1655266_-|putative-acyl-CoA-thioester-hydrolase
MNTYSVSRLALALAFGVTLSACSSTPADQQPSTQTAPGTTARPILNAEEAKNFTPAAYFQSLAPNAAAWTPSAISLPAQPDFIVGPAGTQGVTHTTIQAAVDAAIARHSNRRLYIAIMPGEYPGTVYVPAAPGALTLYGTGDKPIDVKISEAIDSEMDRNTWRRLVNPGGKYMPGKPAWYMFDSCQSKSAATIGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQVQINKVNILGRQNTFFVTNSGVQNRLQDNRQTRTLVTNSYIEGDVDIVSGRGAVVFDNTDFRVVNSRTQKEAYVFAPATLKSVTYGFLATNSRFTASGDNVAQLGRALDVDGNSNGQVVIRDSAINEGFNIAQPWAAAVGSGRPFSGNTGSADDKGNLQRNLNDNGFNRMWEYNNRGVGSTVVAEPKQ
>NZ_CP009872.1|WP_002895284.1|1652363_1653287_-|acyltransferase-family-protein
MTAVTFFTIYNTWDRFDYDYHWILGLLTFISTIATPLFFVVAGYLDAQTRHDANWQIGKIKSVVIVFLFWVTVYYVWEPYQRGYLIQPWFIFALIVIYTFHPLIAWLSQRRGLFFAVLLTLLCCSYGYDLLSVIYPDRHLFSLPPQYRLWTWLLFYLTGQLFNDPKVAEWIRNPQVIKGSIIALPFVYLFTWFYERHFFFALFKADRNAFILTGSQIYILIVLLVIAANAVQFKKNREWKEAVLATVSKAMTGVYILHYSVFHLLVMLIPVHSLATKLGVIALTFVLSVLISLAALSSTLLRKVITL
>NZ_CP009872.1|WP_002895283.1|1651840_1652347_+|hypothetical-protein
MRGKSVMLLAGLASLAQANELNLYSVNTGSYVYHLTNNHGQYTENFENHFFSVERKFSADSKYSLLLGTMNNSFNDRCLALGVRRDWYHSGSGWTFKGVYGYTGEFFFDAFEHCGDHGSYKDFKDATGIGFSPYIYHAIQYNFTDYFAVESGIIIPSVFVISIQWSFR
>NZ_CP009872.1|WP_004229842.1|1651489_1651636_+|hypothetical-protein
MAGEMHEIAPTREGVNSNAVVDRWLSSASDSEHSGKYDEALSAFCTVR
>NZ_CP009872.1|WP_002895575.1|1664093_1664570_-|kinase-inhibitor
MKLISHDLQDGGKLPNRHVFNGMGYDGDNISPHLMWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVANLPADTRVLPQGAGSGQAELPEEAVQTRTDFGKAGYGGAAPPKGETHRYIFTVHALDVEKIEVDAEASGAMVGFNVHFHSLASASITALFS
>NZ_CP009872.1|WP_002895578.1|1664640_1665930_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTLDDLAFDRRHIWHPYTSMTSPLPVYPVVSAHGCELSLAGGEQLVDGMSSWWAAIHGYNHPRLNAALKGQIDQMSHVMFGGITHPPAVALCRQLVAMTPASLECVFLADSGSVAVEVAMKMALQYWQAKGEPRRRFLTFRNGYHGDTFGAMSVCDPQNSMHSLWQGYLPDNLFAPAPQSRFDGEWDEMDMVPFARLMAAHRHEIAAVILEPIVQGAGGMRMYHPEWLKRVRKMCDREGILLIADEIATGFGRTGKLFACEHAGITADILCLGKALTGGTMTLSAAITTRTVAETISNGEAGCFMHGPTFMGNPLACAVAGESLRLLESGEWQPQVTAIEAQLQAELAPARGSALVADVRVLGAIGVVETRRPVNMAALQRFFVEQGVWIRPFGRLIYLMPPYIITPEQLTRLTRAVNQAVQDETFFSE
>NZ_CP009872.1|WP_002895580.1|1666143_1667184_+|biotin-synthase-BioB
MAHQPRWTMSQVTELFNKPLIDLLFEAQQIHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSARYKTGLEAERLMEVEQVLESARQAKNAGSTRFCMGAAWKNPNDRDMPYLEQMVKGVKALGLESCMTLGTLTDSQAQRLAEAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLDKVRDAGIKVCSGGIVGLGESVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAIARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGINPQQTAVLEGDNEQQQRLEQALLTPDTEEYYNAAAL
>NZ_CP009872.1|WP_004151700.1|1667180_1668338_+|8-amino-7-oxononanoate-synthase
MSWQQRIDRALDERRAAEAFRRRLPVTHGAGRWLEREGERWLNFSSNDYLGLSQHPAIIAAWQQGATRYGVGAGGSGHVSGYSEAHRALEEALVDWLGYPRALLFISGFAANQALIAALVEKDDRIVADRLSHASLLEAASLSPAQLRRFTHNDPQQLAQLLAKPLAGEQLAVTEGIFSMDGDSAPLAAIHAATQAAGAVLLVDDAHGVGVVGDEGRGSCAAQAVRPELLVVTFGKAFGVSGAAVLCDEAMADYLLQFARHLIYSTAMPPAQAVALSAALGIIRSDEGRQRRDILAARIRQFREGMGKVSLGLTDSVSAIQPLIVGDNARALNLACRLRDAGCWATAIRPPTVPVGSARLRLTLTAAHHAEDINRLLEVLHGHSE
>NZ_CP009872.1|WP_004142100.1|1668321_1669077_+|malonyl-ACP-O-methyltransferase-BioC
MATVNKQAVAAAFGRAASGYTQHDELQRRCADLLLRQLARRDFAQVLDAGCGPGSMSRYWREAGSVVTALDLSAGMLAQAQRNDAAQHYLLGDIEALPLPDACVDLAWSNLAVQWCDDLRAAIGELYRVARPGGRVAFSTLLADSLPELNQAWQAIDDRPHANRFLSEAAVRAALSGLRATGEVHQISLPFADALSAMRSLKGIGATHLHQGRTAAPLGRGKLRELQLAWPQRQGICPLTYSLFTGVIERD
>NZ_CP009872.1|WP_002895648.1|1669069_1669792_+|ATP-dependent-dethiobiotin-synthetase-BioD
MTKRFFVTGTDTEVGKTIASSALLQAANLLGFHTAGYKPVASGSELTGDGLRNEDALALQRHSRVALRYDQVNPYTFAEPTSPHIISADEGRPIAAARLSSGLRELEGLADWVLVEGAGGWFTPLSDSLTFADWAQAEQLPVILVVGVKLGCINHAMLTAQAVRQAGLPLAGWIANDVQPPGKRHAEYLATLKNRLAAPFLGEIPWLADIAQRDDLGQYLDLRALDPALSTAPAAAHPAP
>NZ_CP009872.1|WP_004152853.1|1669733_1670456_-|ATP-binding-cassette-domain-containing-protein
MLNLQAVNHFYGNQHSLWNVDLVLRPGECIGVLGREGMGKTTLVNCIAGHLPVASGRMTWHDIGAPPQDLTPLSAQSRSAIGIGYVPQDKRIFSQLSVEENLHIALAAGKPGANASGGEIYEHFPELYALRQRKGASLSDDDQYQLALARALIVQPRLLILDEPSRGRGPRCLQKLADLLLRLNRDIGLTVLLAEQHLPFIRRVADRFCVLHRGRNVAEGDIMALDEPLLAQWITPDPAP
>NZ_CP009872.1|WP_002895652.1|1670542_1670755_-|hypothetical-protein
MDNCPQPKTTAARRLSPFAVNRVAKNFYRTIFDNYPLKAARFLLLFAPPFSVGHRKSAAPALTRPDGIGV
>NZ_CP009872.1|WP_002895655.1|1671166_1673188_+|excinuclease-ABC-subunit-B
MSKSFVLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVEGTVPRYTIYPKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQLGQGLAKTKAKGRGKAKAVEPAGLSAVDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>NZ_CP009872.1|WP_002895658.1|1673436_1674534_-|two-component-system-sensor-histidine-kinase-PmrB
MALFATETWTMRHRLLLTIGAILVVCQLISVFWLWHESKEQIQLLVASAIEGHNNQKHVEHEVREAVASLLVPSLLIVGLALYISMLAVRKITRPLSRLQSELENRTPDNLTPIVLSESVPEVTAVTTALNQLVSRLNLTLDRERLFTADVAHELRTPLAGLRLHLELLAKVHGMGVDPLIQRLDQMTTSISQLLQLARVGQSFSAGSYQQVLLLDDVVKPLQDELEAMLAQRQQRLLLTDIENEAVVSGDATLIGVILRNLVENAHRYSPEGSTIRVSVKAGLMPVMAVEDEGPGIDEAKSGELSKAFVRMDSRYGGIGLGLSIVTRIAQLHDAQFFLHNRQPGPGVRAWVLFPQRGGQNVSTH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP009872_2	2.1\|1278108\|36\|NZ_CP009872\|CRISPRCasFinder	1278108-1278143	36	MK448233	Klebsiella phage ST11-VIM1phi8.1, complete genome	8447-8482	1.0
NZ_CP009872_2	2.1\|1278108\|36\|NZ_CP009872\|CRISPRCasFinder	1278108-1278143	36	MK448235	Klebsiella phage ST512-KPC3phi13.1, complete genome	8447-8482	1.0
NZ_CP009872_2	2.1\|1278108\|36\|NZ_CP009872\|CRISPRCasFinder	1278108-1278143	36	MK448231	Klebsiella phage ST101-KPC2phi6.1, complete genome	11383-11418	1.0

1. spacer 2.1|1278108|36|NZ_CP009872|CRISPRCasFinder matches to MK448233 (Klebsiella phage ST11-VIM1phi8.1, complete genome) position: , mismatch: 0, identity: 1.0

acgcaaacccagtaaccacgctgcgtaccggcgagg	CRISPR spacer
acgcaaacccagtaaccacgctgcgtaccggcgagg	Protospacer
************************************

2. spacer 2.1|1278108|36|NZ_CP009872|CRISPRCasFinder matches to MK448235 (Klebsiella phage ST512-KPC3phi13.1, complete genome) position: , mismatch: 0, identity: 1.0

acgcaaacccagtaaccacgctgcgtaccggcgagg	CRISPR spacer
acgcaaacccagtaaccacgctgcgtaccggcgagg	Protospacer
************************************

3. spacer 2.1|1278108|36|NZ_CP009872|CRISPRCasFinder matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 0, identity: 1.0

acgcaaacccagtaaccacgctgcgtaccggcgagg	CRISPR spacer
acgcaaacccagtaaccacgctgcgtaccggcgagg	Protospacer
************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

590780 : 596605

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152202.1\|590780_591347_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8
WP_004152203.1\|591364_591610_-	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	5.5e-19	56.8
WP_004152204.1\|591606_592344_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.1e-70	59.4
WP_000556592.1\|592904_593171_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.0e-30	71.6
WP_004153681.1\|593167_593716_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	1.1e-30	69.4
WP_004152205.1\|593712_593940_+	hypothetical protein	NA	NA	NA	NA
WP_004152206.1\|593936_594257_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_004152207.1\|594271_596605_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	83.9

DBSCAN-SWA_2

1267052 : 1312327

Escherichia_phage(25.0%)

tRNA,holin,head,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004143010.1\|1267052_1268438_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4
WP_004143016.1\|1268483_1268696_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004143017.1\|1268697_1269564_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
WP_004151317.1\|1271034_1271370_-	excisionase family DNA-binding protein	NA	NA	NA	NA
WP_004151316.1\|1271371_1271587_-	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	4.0e-13	52.9
WP_004151314.1\|1271588_1271807_-	hypothetical protein	A0A1I9LJM7	Stx_converting_phage	1.2e-09	47.2
WP_004151312.1\|1271803_1272571_-	hypothetical protein	D5LH17	Escherichia_phage	1.7e-66	53.4
WP_004151310.1\|1272567_1273224_-	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-113	87.5
WP_004151308.1\|1273220_1273379_-	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	3.0e-10	60.8
WP_004151306.1\|1273375_1274056_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	7.9e-124	93.4
WP_032441738.1\|1274052_1274898_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	3.4e-68	58.8
WP_004151304.1\|1274913_1275198_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	8.0e-30	62.8
WP_004151303.1\|1275286_1275481_-	hypothetical protein	NA	NA	NA	NA
WP_004151302.1\|1275473_1275584_-	hypothetical protein	NA	NA	NA	NA
WP_004151301.1\|1275580_1275796_-	hypothetical protein	B5WZV1	Pseudomonas_phage	1.6e-09	48.6
WP_004151300.1\|1276146_1276836_-	helix-turn-helix transcriptional regulator	G8C7U1	Escherichia_phage	4.3e-61	52.2
WP_004151299.1\|1276963_1277197_+	helix-turn-helix domain-containing protein	G8C7U2	Escherichia_phage	4.3e-13	50.7
WP_001548453.1\|1277237_1277459_+	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004151298.1\|1277544_1277691_+	hypothetical protein	NA	NA	NA	NA
WP_004230546.1\|1277731_1278583_+	hypothetical protein	F1C5C3	Cronobacter_phage	5.3e-85	56.3
WP_187073836.1\|1278587_1280003_+	AAA family ATPase	Q9MCT4	Escherichia_phage	7.0e-183	66.9
WP_004151295.1\|1280002_1280296_+	protein ren	O48423	Enterobacteria_phage	3.3e-26	65.6
WP_004151294.1\|1280292_1280799_+	hypothetical protein	A0A0A6Z565	Enterobacter_phage	3.0e-27	59.6
WP_004151293.1\|1280905_1281748_+	ead/Ea22-like family protein	A0A2H4FRZ0	Salmonella_phage	1.8e-29	60.8
WP_004151292.1\|1281747_1281924_+	hypothetical protein	NA	NA	NA	NA
WP_004151291.1\|1281920_1282568_+	DUF551 domain-containing protein	A5LH60	Enterobacteria_phage	4.5e-12	32.6
WP_004151288.1\|1283068_1283524_+	hypothetical protein	K7P7B8	Enterobacteria_phage	8.0e-56	69.5
WP_004151287.1\|1283523_1283694_+	NinE family protein	G8C7V4	Escherichia_phage	1.3e-14	73.2
WP_004151286.1\|1283686_1284322_+	recombination protein NinG	M9NYX8	Enterobacteria_phage	2.7e-81	77.9
WP_004151285.1\|1284318_1284456_+	YlcG family protein	NA	NA	NA	NA
WP_004151284.1\|1284448_1284979_+	HNH endonuclease	A0A193GYW9	Enterobacter_phage	5.2e-30	43.1
WP_004151283.1\|1284975_1285665_+	antitermination protein	I6PDF8	Cronobacter_phage	1.4e-56	54.5
WP_004151282.1\|1286574_1286823_+\|holin	class II holin family protein	NA	NA	NA	NA
WP_004151281.1\|1286825_1287356_+	lysozyme	G9L6J6	Escherichia_phage	6.0e-79	78.5
WP_004151280.1\|1287352_1287817_+\|lysis	lysis protein	Q76H63	Enterobacteria_phage	2.4e-55	73.2
WP_004151279.1\|1287922_1288252_-	hypothetical protein	NA	NA	NA	NA
WP_004151277.1\|1288622_1289225_+	hypothetical protein	G8C7P2	Escherichia_phage	5.4e-76	80.9
WP_004151276.1\|1289224_1290697_+	hypothetical protein	A0A1W6JNY3	Morganella_phage	1.3e-248	82.5
WP_004151275.1\|1290709_1292131_+	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	9.6e-148	57.1
WP_004151274.1\|1292105_1293110_+\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	9.0e-116	69.7
WP_004151273.1\|1293151_1293628_+	hypothetical protein	NA	NA	NA	NA
WP_004151272.1\|1293700_1295086_+	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	2.3e-154	60.0
WP_004151271.1\|1295089_1295518_+	hypothetical protein	F1C5E0	Cronobacter_phage	1.6e-42	60.8
WP_004151270.1\|1295529_1296624_+	hypothetical protein	F1C5E1	Cronobacter_phage	1.7e-123	62.8
WP_004151269.1\|1296634_1296874_+	hypothetical protein	NA	NA	NA	NA
WP_004151268.1\|1296876_1297257_+	hypothetical protein	F1C5E2	Cronobacter_phage	5.3e-29	55.3
WP_004151267.1\|1297256_1297430_+	hypothetical protein	I6R0P9	Salmonella_phage	1.4e-13	56.1
WP_004151266.1\|1297429_1297792_+	hypothetical protein	A0A173GCE0	Salmonella_phage	1.8e-18	45.0
WP_004151265.1\|1297794_1298220_+	hypothetical protein	R9TPP7	Aeromonas_phage	5.1e-28	47.9
WP_004151264.1\|1298216_1298609_+	hypothetical protein	G0ZNE4	Cronobacter_phage	5.1e-35	52.7
WP_004151263.1\|1298677_1299430_+	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	5.8e-43	42.1
WP_004151262.1\|1299482_1300160_+	hypothetical protein	F1C5E8	Cronobacter_phage	4.8e-73	57.9
WP_004151261.1\|1300335_1301091_+	KilA-N domain-containing protein	K7PGT4	Enterobacteria_phage	2.4e-60	51.0
WP_004151260.1\|1301093_1301348_+	hypothetical protein	K7PM89	Enterobacteria_phage	6.7e-20	73.0
WP_004151259.1\|1301641_1302112_+	hypothetical protein	NA	NA	NA	NA
WP_004151258.1\|1302128_1302488_-	Arc family DNA-binding protein	A0A0P0ZBD1	Stx2-converting_phage	3.8e-16	47.5
WP_004151257.1\|1302587_1302758_+	Arc family DNA-binding protein	I6R9A8	Salmonella_phage	6.1e-17	87.0
WP_004151256.1\|1302747_1303461_+	hypothetical protein	H6WRU8	Salmonella_phage	3.9e-49	50.2
WP_004151255.1\|1303526_1304312_+	phage repressor protein	A0A2L1IV39	Escherichia_phage	1.9e-84	59.7
WP_004151254.1\|1304439_1304943_+	hypothetical protein	NA	NA	NA	NA
WP_004151253.1\|1305035_1308482_+	tape measure protein	Q5G8W8	Enterobacteria_phage	1.4e-163	48.6
WP_004151252.1\|1308524_1309001_+	hypothetical protein	A0A2P1MXB5	Escherichia_phage	3.0e-37	49.7
WP_004199076.1\|1309000_1309471_+	hypothetical protein	R9TPR6	Aeromonas_phage	2.5e-28	41.0
WP_004151250.1\|1309467_1309863_+	C40 family peptidase	F1C5F2	Cronobacter_phage	8.0e-36	54.0
WP_004151249.1\|1309849_1312327_+	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	2.7e-198	45.6

DBSCAN-SWA_3

1757437 : 1794773

Salmonella_phage(87.18%)

portal,tail,lysis,head,integrase,terminase,plate,capsid

attL 1757345:1757363|attR 1794845:1794863

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1757345:1757363	attL	NA	NA	NA	NA
WP_014342959.1\|1757437_1758418_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.4e-97	57.2
WP_004178082.1\|1758905_1760393_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004150866.1\|1760491_1761436_-	hypothetical protein	NA	NA	NA	NA
WP_004152885.1\|1761447_1762326_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.7e-30	39.9
WP_000188448.1\|1762471_1762693_+	hypothetical protein	NA	NA	NA	NA
WP_000460893.1\|1762725_1763235_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000956179.1\|1763242_1763443_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.6e-32	97.0
WP_000963473.1\|1763406_1763748_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
WP_004150864.1\|1763815_1764049_+	DUF2732 family protein	E5G6L6	Salmonella_phage	4.1e-32	96.1
WP_000752622.1\|1764048_1764276_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	6.0e-36	98.7
WP_004150863.1\|1764272_1765130_+	DNA adenine methylase	E5G6L8	Salmonella_phage	2.0e-156	95.4
WP_004150862.1\|1765126_1767541_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_001154434.1\|1767694_1767883_+	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_001217575.1\|1767893_1768127_+	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_000700647.1\|1768241_1768919_+	hypothetical protein	NA	NA	NA	NA
WP_004199124.1\|1769194_1770937_+	AIPR family protein	NA	NA	NA	NA
WP_002895959.1\|1770998_1772024_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	7.6e-171	86.7
WP_004150858.1\|1772023_1773790_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.0
WP_002895967.1\|1773932_1774766_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
WP_002895972.1\|1774782_1775841_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.1e-180	93.1
WP_000059191.1\|1775844_1776495_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_002896151.1\|1776590_1777055_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.0
WP_002896155.1\|1777054_1777258_+\|tail	tail protein X	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
WP_002896158.1\|1777261_1777477_+	hypothetical protein	E5G6N0	Salmonella_phage	3.6e-30	90.1
WP_002896161.1\|1777457_1777967_+	lysozyme	E5G6N1	Salmonella_phage	2.1e-81	83.4
WP_002896163.1\|1777971_1778355_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.1e-17	42.0
WP_002896168.1\|1778351_1778780_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	9.6e-51	77.9
WP_002896170.1\|1778766_1778913_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	6.0e-13	76.1
WP_002896172.1\|1778875_1779307_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
WP_002896175.1\|1779299_1779746_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-50	71.2
WP_004150857.1\|1779742_1780435_-	hypothetical protein	NA	NA	NA	NA
WP_002896177.1\|1780529_1781102_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	4.7e-77	72.3
WP_002896179.1\|1781098_1781461_+	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	5.8e-49	84.7
WP_002896182.1\|1781447_1782356_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	7.6e-106	66.9
WP_004150856.1\|1782348_1782948_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-58	60.5
WP_019724930.1\|1785166_1785901_+	hypothetical protein	NA	NA	NA	NA
WP_002896186.1\|1785904_1786636_+	hypothetical protein	NA	NA	NA	NA
WP_002896188.1\|1786632_1786836_+	hypothetical protein	NA	NA	NA	NA
WP_002896191.1\|1786865_1787942_+\|tail	phage tail protein	Q37842	Escherichia_phage	1.2e-25	44.8
WP_002896193.1\|1788080_1789253_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-210	93.3
WP_002896201.1\|1789262_1789778_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
WP_002896204.1\|1789830_1790130_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.7e-33	79.0
WP_002896220.1\|1790144_1790264_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_002896222.1\|1790256_1792884_+\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	5.6e-117	42.0
WP_002896224.1\|1792880_1793366_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	7.2e-63	75.6
WP_002896225.1\|1793362_1794463_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.4
WP_000972391.1\|1794554_1794773_+	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	7.5e-20	69.0
1794845:1794863	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1829189 : 1838653

Dickeya_phage(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002896440.1\|1829189_1830305_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_004150848.1\|1830301_1832242_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896516.1\|1832318_1832540_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_002896520.1\|1832865_1833183_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896522.1\|1833213_1835493_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_001040187.1\|1835613_1835832_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_002898014.1\|1836185_1836887_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_004150847.1\|1836931_1838653_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3

DBSCAN-SWA_5

1939237 : 1961893

Pectobacterium_phage(28.57%)

tail,head,integrase

attL 1938140:1938154|attR 1971100:1971114

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1938140:1938154	attL	NA	NA	NA	NA
WP_016197576.1\|1939237_1940266_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	4.4e-94	54.1
WP_004199480.1\|1940269_1940494_-	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	4.5e-20	68.1
WP_022644592.1\|1940890_1941457_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	2.5e-51	61.5
WP_022644593.1\|1941456_1943586_-	hypothetical protein	H9C157	Pectobacterium_phage	8.0e-98	34.6
WP_022644594.1\|1943615_1943861_-	hypothetical protein	A0A1B1W282	Salmonella_phage	3.7e-15	59.5
WP_024623105.1\|1943868_1944102_-	hypothetical protein	NA	NA	NA	NA
WP_025712912.1\|1945043_1945430_-	helix-turn-helix domain-containing protein	A5VW98	Enterobacteria_phage	3.4e-15	57.8
WP_022644596.1\|1945510_1945705_+	hypothetical protein	NA	NA	NA	NA
WP_022644597.1\|1945765_1946212_+	hypothetical protein	H9C162	Pectobacterium_phage	5.7e-30	56.1
WP_016197573.1\|1946295_1946454_+	hypothetical protein	NA	NA	NA	NA
WP_032409672.1\|1946456_1947440_+	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	1.3e-39	73.8
WP_022644599.1\|1947436_1948825_+	AAA family ATPase	Q8HA30	Enterobacteria_phage	7.5e-105	46.6
WP_022644600.1\|1948863_1949514_+	hypothetical protein	NA	NA	NA	NA
WP_022644601.1\|1949517_1949751_+	hypothetical protein	NA	NA	NA	NA
WP_022644602.1\|1949790_1950576_+	chromosome partitioning protein ParB	C7BGF1	Burkholderia_phage	7.8e-67	54.9
WP_004141582.1\|1951295_1951526_+	hypothetical protein	A0A2H4JCC5	uncultured_Caudovirales_phage	5.0e-06	37.3
WP_022644604.1\|1951522_1952140_+	HNH endonuclease	NA	NA	NA	NA
WP_032409673.1\|1952152_1952491_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	8.6e-47	82.0
WP_029499143.1\|1952671_1952863_+	hypothetical protein	NA	NA	NA	NA
WP_004199500.1\|1952931_1953525_+	DUF1367 family protein	H9C173	Pectobacterium_phage	7.2e-81	72.1
WP_071570746.1\|1953514_1953838_+	DUF968 domain-containing protein	A0A1I9KFA7	Aeromonas_phage	6.8e-25	55.8
WP_022644607.1\|1953825_1954173_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004199525.1\|1954178_1954619_+	phage family protein	R9TRJ4	Aeromonas_phage	4.3e-14	43.8
WP_004199492.1\|1954659_1955184_+	DUF2829 domain-containing protein	A0A1B0VMG3	Pseudomonas_phage	2.5e-45	54.1
WP_004199520.1\|1955245_1955479_+	hypothetical protein	NA	NA	NA	NA
WP_004199477.1\|1955462_1955723_+	hypothetical protein	NA	NA	NA	NA
WP_004199526.1\|1955729_1956182_+	DNA-packaging protein	A3EYX3	Salmonella_phage	1.1e-49	66.4
WP_004199513.1\|1956266_1957661_+	hypothetical protein	A0A0E3JIA1	Rhodoferax_phage	2.4e-58	36.4
WP_004141558.1\|1957660_1959325_+\|head,tail	head-tail connector protein	A0A221SAN2	Ralstonia_phage	3.1e-105	39.4
WP_004199528.1\|1959327_1959651_+	hypothetical protein	NA	NA	NA	NA
WP_004199538.1\|1959637_1960375_+	hypothetical protein	NA	NA	NA	NA
WP_004191051.1\|1960385_1961381_+	hypothetical protein	W6MW28	Pseudomonas_phage	2.7e-104	60.2
WP_004191050.1\|1961419_1961893_+	hypothetical protein	K4NYY6	Pseudomonas_phage	1.8e-26	46.3
1971100:1971114	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1967009 : 1983089

Salmonella_phage(50.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022644615.1\|1967009_1969517_+	transglycosylase SLT domain-containing protein	Q858G0	Salmonella_phage	7.6e-55	26.4
WP_022644616.1\|1969516_1971358_+	hypothetical protein	Q858F9	Salmonella_phage	9.4e-79	33.4
WP_022644617.1\|1971357_1974075_+	hypothetical protein	Q858F8	Salmonella_phage	8.5e-262	51.2
WP_127897200.1\|1974071_1974395_+	hypothetical protein	NA	NA	NA	NA
WP_022644619.1\|1974842_1976093_-	hypothetical protein	NA	NA	NA	NA
WP_004191041.1\|1976305_1976521_+\|holin	class II holin family protein	A5LH82	Enterobacteria_phage	1.4e-10	55.9
WP_004191039.1\|1976522_1977062_+	lysozyme	H6WRZ4	Salmonella_phage	1.0e-81	78.1
WP_009308366.1\|1977058_1977589_+	hypothetical protein	K7P6W1	Enterobacteria_phage	2.4e-35	48.9
WP_004199504.1\|1977585_1977738_+	DUF1378 family protein	NA	NA	NA	NA
WP_022644620.1\|1977829_1980265_+	hypothetical protein	A0A0A8J9V7	Klebsiella_phage	1.7e-67	34.5
WP_022644621.1\|1980463_1980658_-	hypothetical protein	NA	NA	NA	NA
WP_022644622.1\|1980668_1982180_-	hypothetical protein	H6X4Y6	Enterobacteria_phage	1.3e-57	33.5
WP_004199521.1\|1982270_1982840_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	3.9e-84	86.8
WP_004199491.1\|1982813_1983089_-	hypothetical protein	A0A0M3ULK3	Salmonella_phage	1.9e-23	60.9

DBSCAN-SWA_7

2307464 : 2379218

uncultured_Caudovirales_phage(35.29%)

holin,transposase,integrase,terminase,plate

attL 2305545:2305559|attR 2314485:2314499

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2305545:2305559	attL	NA	NA	NA	NA
WP_004152144.1\|2307464_2308226_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.4e-20	32.5
WP_004152145.1\|2308442_2309975_+	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.1e-21	30.0
WP_016197745.1\|2310173_2310722_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_004152147.1\|2310918_2312100_+\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	5.6e-202	84.2
WP_004152148.1\|2312080_2312323_-	hypothetical protein	A0A0M4RTZ2	Salmonella_phage	2.2e-20	73.8
WP_004198245.1\|2312282_2312429_-	hypothetical protein	A0A1B5FPC2	Escherichia_phage	2.9e-15	70.8
WP_014343018.1\|2312501_2312735_-	hypothetical protein	NA	NA	NA	NA
WP_004152150.1\|2312977_2313190_-	hypothetical protein	A0A286S2B6	Klebsiella_phage	3.4e-33	98.6
WP_004152151.1\|2313186_2313411_-	hypothetical protein	A0A286S2B3	Klebsiella_phage	3.1e-29	89.2
WP_004154298.1\|2313400_2314111_-	Rha family transcriptional regulator	A0A286S260	Klebsiella_phage	2.1e-111	88.3
WP_004152153.1\|2314116_2314635_-	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.7e-94	98.8
2314485:2314499	attR	NA	NA	NA	NA
WP_004152154.1\|2314739_2315567_-	hypothetical protein	Q8W654	Enterobacteria_phage	5.5e-111	84.0
WP_004152155.1\|2315563_2315758_-	hypothetical protein	NA	NA	NA	NA
WP_004152156.1\|2315754_2316180_-	hypothetical protein	A0A286S1S2	Klebsiella_phage	3.5e-53	77.9
WP_004177208.1\|2316176_2316395_-	hypothetical protein	A0A286S1P6	Klebsiella_phage	6.6e-32	98.6
WP_004152157.1\|2316366_2316621_-	hypothetical protein	A0A286SGR4	Klebsiella_phage	3.1e-41	97.6
WP_004152158.1\|2316613_2316979_-	hypothetical protein	A0A286S1Q6	Klebsiella_phage	6.9e-58	99.2
WP_004152159.1\|2317148_2317337_-	hypothetical protein	A0A286S1P8	Klebsiella_phage	4.6e-26	100.0
WP_004152160.1\|2317329_2317644_-	hypothetical protein	A0A286S1T9	Klebsiella_phage	1.0e-49	100.0
WP_004152161.1\|2317814_2318483_-	LexA family transcriptional regulator	A0A286S2B2	Klebsiella_phage	2.4e-125	99.5
WP_004152162.1\|2318580_2318802_+	helix-turn-helix transcriptional regulator	A0A286S2C1	Klebsiella_phage	3.0e-32	100.0
WP_004198228.1\|2319378_2321037_+	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	0.0e+00	96.0
WP_004198233.1\|2321038_2322001_+	toprim domain-containing protein	A0A286N2Q0	Klebsiella_phage	4.8e-183	99.4
WP_004198239.1\|2321997_2322474_+	hypothetical protein	A0A286N2Q1	Klebsiella_phage	1.8e-90	100.0
WP_004152167.1\|2322470_2323253_+	antitermination protein	F1C595	Cronobacter_phage	7.2e-113	76.8
WP_004146526.1\|2323658_2323907_+\|holin	class II holin family protein	NA	NA	NA	NA
WP_004152169.1\|2323909_2324440_+	lysozyme	K7PLY1	Enterobacteria_phage	2.7e-79	77.1
WP_004153952.1\|2324436_2324826_+	lipase chaperone	A0A192Y6H8	Salmonella_phage	9.4e-21	49.2
WP_004152170.1\|2325060_2325381_+	hypothetical protein	NA	NA	NA	NA
WP_004218030.1\|2325746_2326235_+	hypothetical protein	NA	NA	NA	NA
WP_004152172.1\|2326185_2327586_+\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	9.4e-188	69.0
WP_004152173.1\|2327823_2329275_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	3.8e-192	68.8
WP_004152174.1\|2329330_2329879_+	hypothetical protein	A0A0M4REK0	Salmonella_phage	3.0e-49	56.3
WP_004199270.1\|2329930_2331133_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	2.6e-106	54.1
WP_000528476.1\|2331136_2331631_+	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.2e-50	62.7
WP_001132269.1\|2331642_2332584_+	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	1.7e-137	77.1
WP_000725700.1\|2332623_2332905_+	hypothetical protein	NA	NA	NA	NA
WP_000113538.1\|2332873_2333293_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.3e-40	60.7
WP_000834982.1\|2333289_2333796_+	hypothetical protein	NA	NA	NA	NA
WP_001116156.1\|2333795_2334182_+	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	1.1e-48	78.2
WP_004152176.1\|2334276_2334717_+	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
WP_004152177.1\|2334720_2335866_+	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	76.9
WP_004152178.1\|2335876_2336167_+	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	2.6e-23	85.5
WP_085955245.1\|2336107_2337300_-\|transposase	IS3-like element ISKpn18 family transposase	U5P429	Shigella_phage	3.5e-50	43.5
WP_004152564.1\|2337626_2338052_+	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	2.6e-40	63.4
WP_004152565.1\|2338087_2338240_+	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	7.6e-19	88.0
WP_004152566.1\|2338229_2340233_+	lytic transglycosylase domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	1.2e-247	63.6
WP_004152567.1\|2340232_2340832_+	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	9.9e-54	57.6
WP_004217362.1\|2340907_2341135_+	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	4.6e-20	56.0
WP_004152569.1\|2341137_2342160_+	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	9.2e-100	54.2
WP_004152570.1\|2342159_2342501_+	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.8e-23	46.6
WP_004199301.1\|2342550_2342733_+	hypothetical protein	NA	NA	NA	NA
WP_004152571.1\|2342775_2343342_+	hypothetical protein	NA	NA	NA	NA
WP_004152572.1\|2343395_2344049_+	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	1.0e-59	63.5
WP_004152573.1\|2344050_2344404_+	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.3e-50	80.3
WP_004152574.1\|2344403_2345600_+\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	3.9e-158	72.9
WP_004152575.1\|2345596_2346370_+	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	2.8e-77	54.4
WP_004152576.1\|2346369_2347236_+	hypothetical protein	A0A2H4IYR0	uncultured_Caudovirales_phage	1.9e-34	64.5
WP_004152577.1\|2347235_2347433_+	hypothetical protein	NA	NA	NA	NA
WP_004218487.1\|2349783_2350512_+	hypothetical protein	NA	NA	NA	NA
WP_002902128.1\|2350522_2351254_+	hypothetical protein	NA	NA	NA	NA
WP_002902131.1\|2351250_2351460_+	hypothetical protein	NA	NA	NA	NA
WP_002902133.1\|2351564_2351849_+	hypothetical protein	NA	NA	NA	NA
WP_002902136.1\|2352071_2352320_-	DinI-like family protein	S5MQI1	Escherichia_phage	1.4e-25	70.4
WP_002902144.1\|2353165_2353657_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002902148.1\|2353699_2355244_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004218490.1\|2355253_2356597_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004151603.1\|2356593_2357283_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004151602.1\|2357279_2358986_+	OmpA family protein	NA	NA	NA	NA
WP_002902160.1\|2358990_2359482_+	type VI secretion system effector Hcp	NA	NA	NA	NA
WP_002902163.1\|2359746_2362401_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	2.5e-96	33.4
WP_004228410.1\|2362402_2364772_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	9.1e-18	33.8
WP_002902169.1\|2364772_2365552_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_002902172.1\|2365615_2366146_+	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902174.1\|2366214_2366745_+	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902176.1\|2366812_2367343_+	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902178.1\|2367411_2367942_+	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902180.1\|2368009_2368540_+	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_004151601.1\|2368527_2370945_+	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_002902252.1\|2370989_2371247_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_002902254.1\|2371243_2372383_+	hypothetical protein	NA	NA	NA	NA
WP_004151599.1\|2372366_2375792_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_004151598.1\|2377463_2379218_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_8

2574732 : 2585619

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210516.1\|2574732_2575353_-	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0
WP_020326989.1\|2575345_2576611_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.3e-232	99.3
WP_004151610.1\|2576622_2577525_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	7.7e-159	99.3
WP_002210513.1\|2577785_2578547_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_004176269.1\|2578567_2579428_-	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002904006.1\|2579725_2579986_+	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_001620097.1\|2580072_2581161_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_004151612.1\|2581191_2582457_-	MFS transporter	NA	NA	NA	NA
WP_004151613.1\|2582511_2585619_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6

DBSCAN-SWA_9

3234597 : 3277697

Microcystis_virus(25.0%)

tRNA,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002910404.1\|3234597_3235854_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_002910405.1\|3236124_3236736_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_004217879.1\|3236735_3237584_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_002910407.1\|3237767_3238715_+	ribose-phosphate diphosphokinase	A0A2K9L2G2	Tupanvirus	2.3e-44	37.5
WP_004152259.1\|3238839_3240519_+	C4-dicarboxylic acid transporter DauA	A0A2H4J153	uncultured_Caudovirales_phage	7.9e-24	23.4
WP_002910436.1\|3240519_3241566_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_002910437.1\|3241788_3242064_-	stress-induced protein YchH	NA	NA	NA	NA
WP_002910438.1\|3242336_3242921_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_002910443.1\|3243038_3244130_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_002910446.1\|3244212_3244422_-	DUF1869 domain-containing protein	NA	NA	NA	NA
WP_002910453.1\|3244623_3245538_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004152260.1\|3245669_3247085_-	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_004152261.1\|3247104_3247548_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_002910493.1\|3247550_3248087_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004152910.1\|3248067_3249084_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_002910495.1\|3249113_3250877_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004152262.1\|3251010_3254421_-	type VI secretion protein VasK	NA	NA	NA	NA
WP_004198077.1\|3254404_3255562_-	hypothetical protein	NA	NA	NA	NA
WP_002910497.1\|3255565_3255832_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_072093174.1\|3256129_3256315_-	hypothetical protein	NA	NA	NA	NA
WP_171815252.1\|3256575_3256878_-	hypothetical protein	NA	NA	NA	NA
WP_000019473.1\|3256935_3257916_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_004152632.1\|3258252_3259143_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7H6	Microcystis_virus	4.1e-11	29.8
WP_002910539.1\|3259318_3260212_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A075BSL8	Microcystis_phage	2.8e-12	27.1
WP_038435084.1\|3260233_3260362_-	hypothetical protein	NA	NA	NA	NA
WP_004152633.1\|3260387_3261281_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A075BSL8	Microcystis_phage	1.7e-12	27.3
WP_004217423.1\|3261302_3261419_-	hypothetical protein	NA	NA	NA	NA
WP_002910544.1\|3261464_3262358_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7H6	Microcystis_virus	6.7e-14	30.5
WP_002910547.1\|3262379_3262685_-	hypothetical protein	NA	NA	NA	NA
WP_002910551.1\|3264200_3264707_-	hypothetical protein	NA	NA	NA	NA
WP_004153085.1\|3264703_3265033_-	hypothetical protein	NA	NA	NA	NA
WP_004199326.1\|3265029_3265212_-	hypothetical protein	NA	NA	NA	NA
WP_022644641.1\|3265353_3266322_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	6.5e-180	96.3
WP_002910586.1\|3267927_3268437_-	hypothetical protein	NA	NA	NA	NA
WP_002910589.1\|3268426_3268579_-	hypothetical protein	NA	NA	NA	NA
WP_002910591.1\|3268673_3269180_-	hypothetical protein	NA	NA	NA	NA
WP_002910593.1\|3269176_3269686_-	hypothetical protein	NA	NA	NA	NA
WP_004152319.1\|3269686_3271042_-	S-type pyocin domain-containing protein	NA	NA	NA	NA
WP_004152317.1\|3274005_3275703_-	OmpA family protein	NA	NA	NA	NA
WP_004152316.1\|3275706_3276360_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002910645.1\|3276356_3277697_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_10

3584898 : 3591805

Bacillus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151135.1\|3584898_3586377_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	1.1e-29	28.3
WP_002912634.1\|3586373_3587096_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	6.4e-31	33.2
WP_002912635.1\|3587414_3588776_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	2.5e-206	94.5
WP_004151134.1\|3589018_3589915_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_002912638.1\|3590157_3590931_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-25	36.3
WP_004175147.1\|3590941_3591805_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5

DBSCAN-SWA_11

4755319 : 4825897

uncultured_Caudovirales_phage(60.0%)

capsid,protease,portal,head,transposase,integrase,tRNA,terminase,tail

attL 4791078:4791095|attR 4808273:4808290

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002918465.1\|4755319_4755814_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.5e-26	54.8
WP_002918467.1\|4755817_4756456_-	stringent starvation protein A	NA	NA	NA	NA
WP_135801240.1\|4756425_4756710_-	hypothetical protein	NA	NA	NA	NA
WP_000829818.1\|4756767_4757160_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_002918559.1\|4757175_4757604_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_004144945.1\|4757869_4758997_-	cell division protein ZapE	NA	NA	NA	NA
WP_002918565.1\|4759187_4759586_+	DUF1043 family protein	NA	NA	NA	NA
WP_002918566.1\|4759759_4761127_+\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	6.0e-22	25.3
WP_002918568.1\|4761214_4762273_+	outer membrane-stress sensor serine endopeptidase DegS	NA	NA	NA	NA
WP_002918570.1\|4762409_4763348_-	malate dehydrogenase	NA	NA	NA	NA
WP_002918625.1\|4763762_4764233_+	transcriptional regulator ArgR	NA	NA	NA	NA
WP_002918626.1\|4764608_4764872_+	peroxide/acid stress response protein YhcN	NA	NA	NA	NA
WP_002918627.1\|4764970_4765237_+	peroxide/acid stress response protein YhcN	NA	NA	NA	NA
WP_002918629.1\|4765287_4765563_-	barstar family protein	NA	NA	NA	NA
WP_002918632.1\|4765642_4767610_-	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
WP_002918639.1\|4767615_4768548_-	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
WP_002918640.1\|4768555_4768759_-	AaeX family protein	NA	NA	NA	NA
WP_002918641.1\|4768890_4769820_+	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
WP_002918642.1\|4769855_4771301_-\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_004150952.1\|4771389_4775187_-	AsmA2 domain-containing protein YhdP	NA	NA	NA	NA
WP_002918644.1\|4775224_4776694_-	ribonuclease G	NA	NA	NA	NA
WP_002918646.1\|4776696_4777278_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_002918648.1\|4777285_4777774_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_004149974.1\|4777773_4778766_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_002918653.1\|4778836_4779880_-	rod shape-determining protein MreB	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
WP_002918686.1\|4780185_4782126_-	RNase E specificity factor CsrD	NA	NA	NA	NA
WP_002918687.1\|4782205_4782397_-	hypothetical protein	NA	NA	NA	NA
WP_002918688.1\|4782625_4783627_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
WP_002918689.1\|4783626_4784235_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
WP_002918732.1\|4784458_4784911_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_002918736.1\|4784933_4785401_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_002918738.1\|4785411_4786761_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_002918740.1\|4786871_4787114_+	YhdT family protein	NA	NA	NA	NA
WP_002918742.1\|4787103_4788555_+	sodium/pantothenate symporter	NA	NA	NA	NA
WP_002918745.1\|4788566_4789448_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_004144972.1\|4789805_4790771_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_000462905.1\|4790795_4791092_+	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
4791078:4791095	attL	NA	NA	NA	NA
WP_004150954.1\|4791245_4791437_-	hypothetical protein	NA	NA	NA	NA
WP_004150955.1\|4791439_4793101_-\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
WP_000113647.1\|4793084_4793441_-\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
WP_004150957.1\|4793571_4793724_-	hypothetical protein	A0A2H4JCY9	uncultured_Caudovirales_phage	2.4e-17	88.0
WP_004150959.1\|4793716_4794160_-	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.8e-77	91.8
WP_001547824.1\|4794159_4794459_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
WP_004150961.1\|4794455_4794791_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
WP_004150962.1\|4794787_4796029_-\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-230	96.5
WP_001547826.1\|4796030_4796591_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
WP_001549743.1\|4796642_4797809_-\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
WP_052137737.1\|4798072_4798291_+	hypothetical protein	NA	NA	NA	NA
WP_000019473.1\|4798391_4799372_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_004150964.1\|4799833_4800169_-	hypothetical protein	NA	NA	NA	NA
WP_004150965.1\|4800511_4802647_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
WP_001549749.1\|4802646_4803012_-	hypothetical protein	NA	NA	NA	NA
WP_004150966.1\|4803008_4803377_-	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
WP_004150967.1\|4803373_4803688_-	hypothetical protein	NA	NA	NA	NA
WP_001549752.1\|4803680_4803869_-	hypothetical protein	NA	NA	NA	NA
WP_106918304.1\|4803861_4804131_-	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	2.4e-44	94.4
WP_004150969.1\|4804582_4805362_-	phage antirepressor KilAC domain-containing protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5
WP_001547839.1\|4805372_4805657_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_004150970.1\|4805838_4806780_-	hypothetical protein	NA	NA	NA	NA
WP_004150971.1\|4806872_4808099_-\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-150	62.2
WP_004150972.1\|4808374_4809025_-	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA
4808273:4808290	attR	NA	NA	NA	NA
WP_002919101.1\|4809403_4810543_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_002919102.1\|4810555_4813666_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_002919103.1\|4813959_4814181_+	membrane protein	NA	NA	NA	NA
WP_002919123.1\|4819976_4820531_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_002919125.1\|4820506_4820764_-	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_002919126.1\|4820760_4821579_-	shikimate dehydrogenase	NA	NA	NA	NA
WP_002919132.1\|4821582_4822155_-	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA
WP_004145330.1\|4822159_4822702_-	topoisomerase DNA-binding C4 zinc finger domain-containing protein	NA	NA	NA	NA
WP_002919137.1\|4822727_4823201_-	DUF494 domain-containing protein	NA	NA	NA	NA
WP_002919139.1\|4823172_4824297_-	DNA-protecting protein DprA	NA	NA	NA	NA
WP_002919144.1\|4824425_4824935_+	peptide deformylase	E3SLL2	Synechococcus_phage	2.6e-18	40.3
WP_002919147.1\|4824949_4825897_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.2e-07	37.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009874

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009875

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP009872

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection