CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009913	Streptococcus salivarius strain NCTC 8618 chromosome, complete genome	3 crisprs	DEDDh,csa3,DinG,WYL,cas3	0	1	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009913_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009913_1

269943-270036

Orphan

Consensus_repeat	Method
TGTTCTAAAATTCGAGTTGGCAATTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009913_1

>merge|NZ_CP009913|1|269943-270036|CRISPRCasFinder
TGTTCTAAAATTCGAGTTGGCAATTAAGAGCTGTTCCCACCCTAAATGTTATCTTAGTTATAAGATGTGTTCTAAAATTCGAGTTGGCGATTAA

>NZ_CP009913|1|1|269943-270036|CRISPRCasFinder
TGTTCTAAAATTCGAGTTGGCAATTAA	GAGCTGTTCCCACCCTAAATGTTATCTTAGTTATAAGATG
TGTTCTAAAATTCGAGTTGGCGATTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009913.1\|WP_038675235.1\|276128_276971_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224428
NZ_CP009913.1\|WP_038675231.1\|271826_274328_+\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP009913.1\|WP_038675223.1\|263101_263947_-\|superinfection-immunity-protein	unknown	unknown	gnl\|CDD\|379585
NZ_CP009913.1\|WP_038675224.1\|264859_265729_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP009913.1\|WP_038675243.1\|278889_279573_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP009913.1\|WP_038676951.1\|269376_269865_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|238813
NZ_CP009913.1\|WP_038675237.1\|276989_277445_+\|LytTR-family-transcriptional-regulator-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|335768
NZ_CP009913.1\|WP_038675228.1\|270063_270873_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NZ_CP009913.1\|WP_002883656.1\|268331_268508_+\|preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|236066
NZ_CP009913.1\|WP_038675233.1\|275262_276129_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP009913.1\|WP_002883644.1\|268708_269248_+\|transcription-termination/antitermination-protein-NusG	unknown	unknown	gnl\|CDD\|180161
NZ_CP009913.1\|WP_072903624.1\|264037_264343_-\|DUF2752-domain-containing-protein	unknown	unknown	gnl\|CDD\|378499
NZ_CP009913.1\|WP_038675241.1\|277967_278678_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_CP009913.1\|WP_038675239.1\|277454_277886_+\|DUF3021-family-protein	unknown	unknown	gnl\|CDD\|378668
NZ_CP009913.1\|WP_037610690.1\|270865_271633_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP009913.1\|WP_038675226.1\|265794_268122_+\|PBP1A-family-penicillin-binding-protein	unknown	unknown	gnl\|CDD\|273955
NZ_CP009913.1\|WP_022496572.1\|274502_274916_+\|YjdF-family-protein	unknown	unknown	gnl\|CDD\|378596
NZ_CP009913.1\|WP_038675221.1\|261398_263018_+\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP009913.1\|WP_002886472.1\|268170_268323_+\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|234783
NZ_CP009913.1\|WP_002889819.1\|264342_264675_-\|TM2-domain-containing-protein	unknown	unknown	gnl\|CDD\|377473

Protein	Function_ID	Function_description	E-value
NZ_CP009913.1\|WP_038675235.1\|276128_276971_+\|ABC-transporter-permease	gnl\|CDD\|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	0.000402127
NZ_CP009913.1\|WP_038675231.1\|271826_274328_+\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP009913.1\|WP_038675223.1\|263101_263947_-\|superinfection-immunity-protein	gnl\|CDD\|379585	pfam14373, Imm_superinfect, Superinfection immunity protein. This family includes the E. coli bacteriophage T4 superinfection immunity (imm) protein. When E. coli is sequentially infected with two T-even type bacteriophage the DNA of the superinfecting phage is excluded from the host, into the periplasmic space. The immunity protein plays a role in this process.	9.2204e-08
NZ_CP009913.1\|WP_038675224.1\|264859_265729_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	7.89354e-84
NZ_CP009913.1\|WP_038675243.1\|278889_279573_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	8.78416e-103
NZ_CP009913.1\|WP_038676951.1\|269376_269865_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|238813	cd01610, PAP2_like, PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid phosphatase, vanadium chloroperoxidases, vanadium bromoperoxidases, and several other mostly uncharacterized subfamilies. Several members of this superfamily have been predicted to be transmembrane proteins.	9.51666e-13
NZ_CP009913.1\|WP_038675237.1\|276989_277445_+\|LytTR-family-transcriptional-regulator-DNA-binding-domain-containing-protein	gnl\|CDD\|335768	pfam04397, LytTR, LytTr DNA-binding domain. This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.	8.01744e-21
NZ_CP009913.1\|WP_038675228.1\|270063_270873_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.37576e-76
NZ_CP009913.1\|WP_002883656.1\|268331_268508_+\|preprotein-translocase-subunit-SecE	gnl\|CDD\|236066	PRK07597, secE, preprotein translocase subunit SecE; Reviewed.	2.68913e-10
NZ_CP009913.1\|WP_038675233.1\|275262_276129_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.56217e-79
NZ_CP009913.1\|WP_002883644.1\|268708_269248_+\|transcription-termination/antitermination-protein-NusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	3.28618e-82
NZ_CP009913.1\|WP_072903624.1\|264037_264343_-\|DUF2752-domain-containing-protein	gnl\|CDD\|378499	pfam10825, DUF2752, Protein of unknown function (DUF2752). This family is conserved in bacteria. Many members are annotated as being putative membrane proteins.	8.31344e-07
NZ_CP009913.1\|WP_038675241.1\|277967_278678_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	3.89753e-46
NZ_CP009913.1\|WP_038675239.1\|277454_277886_+\|DUF3021-family-protein	gnl\|CDD\|378668	pfam11457, DUF3021, Protein of unknown function (DUF3021). This is a bacterial family of uncharacterized proteins.	4.11258e-09
NZ_CP009913.1\|WP_037610690.1\|270865_271633_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	1.4042e-69
NZ_CP009913.1\|WP_038675226.1\|265794_268122_+\|PBP1A-family-penicillin-binding-protein	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP009913.1\|WP_022496572.1\|274502_274916_+\|YjdF-family-protein	gnl\|CDD\|378596	pfam11208, DUF2992, Protein of unknown function (DUF2992). This bacterial family of proteins has no known function. However, the cis-regulatory yjdF motif, just upstream from the gene encoding the proteins for this family, is a small non-coding RNA, Rfam:RF01764. The yjdF motif is found in many Firmicutes, including Bacillus subtilis. In most cases, it resides in potential 5' UTRs of homologs of the yjdF gene whose function is unknown. However, in Streptococcus thermophilus, a yjdF RNA motif is associated with an operon whose protein products synthesize nicotinamide adenine dinucleotide (NAD+). Also, the S. thermophilus yjdF RNA lacks typical yjdF motif consensus features downstream of and including the P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the S. thermophilus RNAs might sense a distinct compound that structurally resembles the ligand bound by other yjdF RNAs. On the ohter hand, perhaps these RNAs have an alternative solution forming a similar binding site, as is observed with some SAM riboswitches.	2.09155e-40
NZ_CP009913.1\|WP_038675221.1\|261398_263018_+\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP009913.1\|WP_002886472.1\|268170_268323_+\|50S-ribosomal-protein-L33	gnl\|CDD\|234783	PRK00504, rpmG, 50S ribosomal protein L33; Validated.	2.86471e-18
NZ_CP009913.1\|WP_002889819.1\|264342_264675_-\|TM2-domain-containing-protein	gnl\|CDD\|377473	pfam05154, TM2, TM2 domain. This family is composed of a pair of transmembrane alpha helices connected by a short linker. The function of this domain is unknown, however it occurs in a wide range or protein contexts.	3.06279e-13

>NZ_CP009913.1|WP_038676951.1|269376_269865_+|phosphatase-PAP2-family-protein
MMNYKRFYDRISAPLRSYAKVLEGLNKLITRTFYLLFPIFLIWVWLRNGWFVLSTTVLIMGGGFFLLSLGRSLYNRPRPYQTWAIQPLIKKDSLGKSFPSRHVFSATVIAMLALALNPWLGGAMLFLAGALALLRVLGGVHYPSDVLAGYAIGILVGLLLYL
>NZ_CP009913.1|WP_002883644.1|268708_269248_+|transcription-termination/antitermination-protein-NusG
MLDSFDKGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVNVEKNGKVKEVEENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILISMGQTVDVFDTNIKVGDVVQIIDGAFMGQEGRVVEIENNKVKIMINMFGSETAAELELYQIAEL
>NZ_CP009913.1|WP_002883656.1|268331_268508_+|preprotein-translocase-subunit-SecE
MRQTGSIFKVLKDTTWPDRKQRWHDFISVLEYTAFFTVIIYAFDELLSRAMSALINFF
>NZ_CP009913.1|WP_002886472.1|268170_268323_+|50S-ribosomal-protein-L33
MAQKKASLACAECGSRNYSINVSSTPKPTRLEVNKFCKHCKKYTLHKETR
>NZ_CP009913.1|WP_038675226.1|265794_268122_+|PBP1A-family-penicillin-binding-protein
MTFFDNLKNKLFKEENSGKGKDSQPAEKSKNLQNKIKGLFAKKPDEVEQAVEDLDMSQESQETSRYQRSKQKKPIDTTQPLGKVQAFLSKFTLSPRNPIRRFWRRYHIGKILFILVAMLVLTVGSYLFYIAKTTNVSDLQDALKATTVIYDKEGNQAGSLSGQKGTYVELDAISDSLENAVIATEDRTFYENSGVNVKRFLLAIVSMGRFGGGSTITQQLAKNAFLTQEQTVTRKAKEFFLSLELTKKYSKQEILTMYLNNAYFGNGVWGVEDASQKYFGTSAANLTVDEAATLAGMLKGPEIYNPIDNIKNATNRRNTVLANMVDDKKLSQADADSAAGVDMASRLDDTYQGTGDDYKYPSYFDAVIEEATKTYGLSEDEIVKNGYKIYTEMDANSQANMQQTYENTYLFPTSESDGSTAQSASVALDPTTGAVRGLVGRVGGTSDTTFRNFNYATQGKRSPGSTIKPLVVYAPALASGWSINKDLPNKPIDYNGYTPTNYGGVETEDVPMYQALANSYNIPAVYLFNQIGIQKGISYGQKFGLNFDNVPEELGISLGGGVTASPLQMAQAYATFANGGEMNTAYFITKIENASGDIIATHSKKSKRVISQSVANQMTSMMLGTFSNGSAVNANYTGYTMAGKTGTVQAEFNKDLTSDQWVIGYTPDVVMTTWIGFDKTDESHYLTGASSGTASTIFSYIAADVLPNTPGTEFTVENAYAADGQTLDYTADPNDSRNSSNKSWTDKASDVVNDVKDQASSLWDKITDSFSGLFR
>NZ_CP009913.1|WP_038675224.1|264859_265729_-|RluA-family-pseudouridine-synthase
MTLHVEIINPYPVTTVKDLLETKLLIPRKIRHFLRTKKHVLINGETINWQSPVEKGDKISLTFDTEDYPEKIIPMGNASLVEPLYEDQHLIVVNKPEGMKTHGNEPTEIALLNHVSAYCGQTCYVVHRLDMETSGAVLFAKNPFILPILNRLLEDKKIQRQYWALAEGKFQTKETVYKDKIGRDRHDRRKRVVDPRKGQVAYTTITRLKAFKGASLVNCQLKTGRTHQIRVHLAHHGHAILGDPLYSHRPASRLMLHAHTLSFTHPLTLDKITVKASSDSFEQGLKNHK
>NZ_CP009913.1|WP_002889819.1|264342_264675_-|TM2-domain-containing-protein
MNPVDQWLAINAKYFPTEQVQYIRQRLEALPEQQLSMLYSISFQDPTMMLVISLFGGSLGIDRFILGQVGLGVGKLLTCGGCGIWSIVDWFLIMDATRQSNAQKLFAVIG
>NZ_CP009913.1|WP_072903624.1|264037_264343_-|DUF2752-domain-containing-protein
MKNYFTRLWAYHQRFFRLYLLVSVAVYGVYLLHLPTPLSLILRPFGLKGWSAGLTRASVRLLHLDWQGAWDYNPLIYPLVVYILTYFFLFPIFSVKKIIRK
>NZ_CP009913.1|WP_038675223.1|263101_263947_-|superinfection-immunity-protein
MKQQDWIDFFQAVNGRNPSIQEMAEAAQKGEFVRETPKQTVEVTETVSQKETVETKQDSKVVEPVESAPSTEVVETAEKDVDSYDVAEEPLTNSMVDEEETFQATNLAQENQSKTFQEQVKPVVETASQTVNQFANQTGETFQQASKNLNETWKKQDKKTQTNLIMLAVASIPAILWALGMILLGIASDDLSAGLITALLSVIINFPLVVLLILPALLNKTDKKWPIFILSFLLGWTFIGWIILLAVSINTNKEAERIRQQQMMMQMAGQQGSSDTFNPFQ
>NZ_CP009913.1|WP_038675221.1|261398_263018_+|chaperonin-GroEL
MAKDIKFSSDARAAMVRGVDTLADTVKVTLGPKGRNVVLEKAFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGLKNVTAGANPIGIRRGIEAAVATAVEELKAIAQPVANKEAIAQVAAVSSRSEKVGEYISEAMERVGNDGVITIEESRGMETELEVVEGMQFDRGYLSQYMVTDNEKMVADLENPFILVTDKKISNIQDVLPLLEEVLKTSRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAVLTGATVITEDLGLELKDATMAALGQASKVTVDKDSTVIVEGAGSTEAIANRVNLIKSQLETTTSEFDREKLQERLAKLSGGVAVVKVGAATETALKEMKLRIEDALNATRAAVEEGIVAGGGTALVNVIAKVAELDLEGDDATGRNIVLRALEEPVRQIAYNAGYEGSVIIDKLKNSPVGTGFNAANGEWVDMVEAGIIDPVKVTRSALQNAASVASLILTTEAVVANKPEPEAPAAPAMDPGMMGY
>NZ_CP009913.1|WP_038675228.1|270063_270873_-|Cof-type-HAD-IIB-family-hydrolase
MSNIRLIISDIDGTILTSNHQVDEQLIEVMPELEKANIPFVLASARSPLGMQPIAHKLGLHDNPIACYNGALVLEGDRTIIQHPVDKAEIQDLLNYLSTDYPSVSVNIYSGKDWITNELDKWSQLEGSITGESPIIKELQDTVSDSEPPIHKLLLIDEPEVIQDLHQKLLSMDFPQTAFYLSKDNYLEVTAKHVSKEHALLELSKYYDLPLEQVMTIGDNFNDSPMLALAGLGIAMGNAPEGVKETANLVTASNDEHGVAQAIRKHVLN
>NZ_CP009913.1|WP_037610690.1|270865_271633_-|DeoR/GlpR-transcriptional-regulator
MYQEQRLEKILTLLEERGSLSVKEMVDALGVSKDTVRRDFDCLSQRNLAQRTHGGILPVKNTTVLGFQERQEELTEDKKKLADLALSFVKDQSLLFFDVSTLMLEVSQKLTKSVTVYSHSLDNALVLSGKEGIDFHLLGGRFYSKNRFYYSLHETQLLQHLQFDLAFFGAASLSQGVVSYEDEEDVAVKQLAMQAARTKILIAESDKYEKHSKYILSKIEDFDYWITDKEPDPDLVESLKDKVTILYDGKDSDYE
>NZ_CP009913.1|WP_038675231.1|271826_274328_+|leucine--tRNA-ligase
MSFYNHKEIEPKWQKYWADHHTFKTGTDASKPKFYALDMFPYPSGAGLHVGHPEGYTATDILSRFKRAQGYNVLHPMGWDAFGLPAEQYAMDTGNDPAEFTAENIANFKRQINALGFSYDWDREVNTTDPNYYKWTQWIFTKLYEKGLAYEAEVPVNWVEELGTAIANEEVLPDGTSERGGYPVVRKPMRQWMLKITAYAERLLNDLDDLDWPESIKDMQRNWIGKSTGANVTFKVKGTDKEFTVFTTRPDTLFGATFTVLAPEHDLVDAITTPEQAEAVADYKHQASLKSDLARTDLAKEKTGVWTGAYAINPVNGKEIPIWIADYVLASYGTGAVMAVPAHDERDWEFAKQFDLPIVEVLEGGNVEEAAYTEDGLHVNSDFLNGLNKEEAIAKIVAWLEEKGFGQEKITYRLRDWLFSRQRYWGEPIPIIHWEDGTSTAVPESELPLVLPVTKDIRPSGTGESPLANLTDWLEVTREDGVKGRRETNTMPQWAGSSWYYLRYIDPHNTEKLADEDLLKQWLPVDIYVGGAEHAVLHLLYARFWHKFLYDLGVVPTKEPFQKLFNQGMILGTSYRDHRGALVATDKVEKRDGSFFHVETGEELEQAPAKMSKSLKNVVNPDDVVEQYGADTLRVYEMFMGPLDASIAWSEEGLEGSRKFLDRVYRLITSKEIVEENNGALDKVYNETVKSVTEQIESMKFNTAIAQLMVFVNAANKEDKLYVDYAKGFIQLIAPFAPHLAEELWQTVAETGESISYVAWPTWDESKLVEDEIEIVVQIKGKVRAKLMVAKDLSREELQEVALANEKVKAEIDGKEIVKVIAVPNKLVNIVVK
>NZ_CP009913.1|WP_022496572.1|274502_274916_+|YjdF-family-protein
METISIGLTVYFEDGFWHGLFEQVYRESYQVCRVTFGQEPKDDEILEILQTQFTQLSFSPETTAKQHVKIKNPKRLQRAVKKQVNQKVSSKSKELLQLQYEERKKISKHQSSVQKQLLKQEKFERKQQKRRDKHKGH
>NZ_CP009913.1|WP_038675233.1|275262_276129_+|ABC-transporter-ATP-binding-protein
MILQAKNISKRYGNYLAVNDIHLQFEKGTFNAILGPNGAGKSTTISMLIGLKQPTKGEIIYEPGTKIGVVFQTSVLDEMLTVRENLAIRARQYKGLKPNRVSDLIGRLGLSTFQKQRYGTLSGGQKRRVDIARALLSQPDILFLDEPTTGLDIQTRKSIWDLLYQLQREEGMTVVLTTHYLDEADEADLIYIVDHGKVIVQGSALDIKSQYAKNILKIRFKEIQQIESLKTSGMSVEQQSQLEYVFQPESEREAIDYLAQVRDNLAHFEFRSGTMDDAFIALTGREVR
>NZ_CP009913.1|WP_038675235.1|276128_276971_+|ABC-transporter-permease
MLALLKRNFLLYFRNRSGVFFSLLGALISFILYIIFLQKNLTDAWAQLPNNGPLLNNWLMSGTLAVTGITTSLAALTQLVKDREHQVDQDLYLSDQGKWRLPFSYLASAIIISFAMQVLMYVLMCGYFREVPKLSILPEVLLIMLLSSLLSSLVNAIFVHFFQSVDSLGKFATIVGTASGFLVGTYVPLGVLPNFAQLLMKCTPATYIAALYRQVLMNETLSETFKDQDDLRQEFQEKMGVQLKWQELLTKENTYLIVLGGILLVGILWAVLVKKSSKKK
>NZ_CP009913.1|WP_038675237.1|276989_277445_+|LytTR-family-transcriptional-regulator-DNA-binding-domain-containing-protein
MKLRFEEKSGISTKDPCVVIQAERLSDQAREVMDYLEQFSVVNQVVIPIKTDDHLVMVKIDDIILAEIDKNVLTIYTIDKTYTMKETLTNFQHRINRRSFLQISRHAVMNIDHLESLSDSFSGNMMAKMTGGVKSSVSRKYVKSLMDYLGV
>NZ_CP009913.1|WP_038675239.1|277454_277886_+|DUF3021-family-protein
MKRLIAYFVSGVRTGSFFYLALLLLGQLIPQLIYPKVSVGNILALFMMSGLMGMLSWILEELDRMSYRFRVILHFLLTAIVLTVTCLISGWYEALTNPAIWIVFIFVYIIIWLYLIWQMHMRTQRINQALLHRRSQKKKSNKL
>NZ_CP009913.1|WP_038675241.1|277967_278678_+|MerR-family-transcriptional-regulator
MKSVKEVSQLSGVSVRTLHYYDEIDLLKPSVVAENGYRYYNRDAVVRLQEILLYRELDFPLKKIKEIVGQPGYDKVQALRDQIKLLELKKSRLEAVIAHAKALQMEEEEMSFEAFDQKAVEAFQEEAQARWGQTEAYQAFVAKGEESFPEVTKEMTAIMSTFGQLKEYNPGDDSVQEQVKALQDYISQHFYPCDQTVLVGLGQMYQTDNRFSSFIDKVGGRGTAAFLAEAIRIYCQ
>NZ_CP009913.1|WP_038675243.1|278889_279573_+|ABC-transporter-ATP-binding-protein
MSILTIDHISKYYNLDGTNQERALNDVTLEIAPGKITAIYGPSGCGKTSLLSIISGLDSQYQGNLYFKNQNMRDFSERDLTYFRKAHIGFVFQNFNLIPHQSVLENVKMPLYVKNMTDKEMVKIAERELSRLGIGDFIKKNVKQLSGGQKQRVAIARALVNNPEMIVADEPTGSLDSQSQENVLEIFKELAEAGKTVIIVTHNPEVADYADVVIKMKDGEVVETIEK

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Crispr_ID: NZ_CP009913_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009913_2

685425-685527

Orphan

Consensus_repeat	Method
GGACAAACCCGAGAATGTCCCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009913_2

>merge|NZ_CP009913|2|685425-685527|CRISPRCasFinder
GGACAACTTCGGGAATGTCCCTGTCCCTGAGGGACAAACCCGAGAATGTCCCTGTGTCCCTGAGGTGTCTCTAGGGACAAGGACAAACCCGAGAATGTCCCTG

>NZ_CP009913|2|2|685425-685527|CRISPRCasFinder
GGACAACTTCGGGAATGTCCCTG	TCCCTGAGGGACAAACCCGAGAATGTCCCTGTGTCCCTGAGGTGTCTCTAGGGACAA
GGACAAACCCGAGAATGTCCCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009913.1\|WP_038676969.1\|686022_686418_+\|RusA-family-crossover-junction-endodeoxyribonuclease	unknown	unknown	gnl\|CDD\|226936
NZ_CP009913.1\|WP_038675605.1\|675300_675537_+\|DUF739-family-protein	unknown	unknown	gnl\|CDD\|283090
NZ_CP009913.1\|WP_164712005.1\|676456_676612_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009913.1\|WP_038675619.1\|683127_685377_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226126
NZ_CP009913.1\|WP_038675623.1\|686414_686642_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009913.1\|WP_038675632.1\|689399_689822_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009913.1\|WP_038675614.1\|679858_680956_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379213
NZ_CP009913.1\|WP_038676967.1\|676047_676287_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009913.1\|WP_164712006.1\|686871_687042_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009913.1\|WP_080730927.1\|687302_687581_+\|DUF1642-domain-containing-protein	unknown	unknown	gnl\|CDD\|369557
NZ_CP009913.1\|WP_038675607.1\|675681_676005_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009913.1\|WP_038675609.1\|676819_678541_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227268
NZ_CP009913.1\|WP_038675626.1\|687645_687963_+\|DUF1372-family-protein	unknown	unknown	gnl\|CDD\|254062
NZ_CP009913.1\|WP_038675628.1\|687959_688364_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273746
NZ_CP009913.1\|WP_155274345.1\|685829_686030_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009913.1\|WP_038675611.1\|678545_679859_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274009
NZ_CP009913.1\|WP_155274346.1\|687184_687340_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009913.1\|WP_038675617.1\|681533_683117_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|223989
NZ_CP009913.1\|WP_038675630.1\|688356_689061_+\|DUF1340-domain-containing-protein	unknown	unknown	gnl\|CDD\|115703
NZ_CP009913.1\|WP_038675616.1\|680970_681534_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009913.1\|WP_038676969.1\|686022_686418_+\|RusA-family-crossover-junction-endodeoxyribonuclease	gnl\|CDD\|226936	COG4570, Rus, Holliday junction resolvase [DNA replication, recombination, and repair].	1.80592e-38
NZ_CP009913.1\|WP_038675609.1\|676819_678541_+\|hypothetical-protein	gnl\|CDD\|227268	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane].	1.42965e-18
NZ_CP009913.1\|WP_038675626.1\|687645_687963_+\|DUF1372-family-protein	gnl\|CDD\|254062	pfam07116, DUF1372, Protein of unknown function (DUF1372). This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.	3.01788e-40
NZ_CP009913.1\|WP_038675628.1\|687959_688364_+\|hypothetical-protein	gnl\|CDD\|273746	TIGR01671, hypothetical_phage_protein, phage uncharacterized protein TIGR01671. This model represents an uncharacterized, well-conserved family of proteins found in bacteriophage and prophage regions of Gram-positive bacteria. [Mobile and extrachromosomal element functions, Prophage functions, Hypothetical proteins, Conserved].	1.62623e-16
NZ_CP009913.1\|WP_038675619.1\|683127_685377_+\|AAA-family-ATPase	gnl\|CDD\|226126	COG3598, RepA, RecA-family ATPase [DNA replication, recombination, and repair].	5.06713e-117
NZ_CP009913.1\|WP_038675614.1\|679858_680956_+\|ATP-binding-protein	gnl\|CDD\|379213	pfam13479, AAA_24, AAA domain. This AAA domain is found in a wide variety of presumed phage proteins.	6.16741e-82
NZ_CP009913.1\|WP_038675611.1\|678545_679859_+\|AAA-family-ATPase	gnl\|CDD\|274009	TIGR02169, chromosome_segregation_protein_related_ptotein, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	1.81435e-09
NZ_CP009913.1\|WP_038675605.1\|675300_675537_+\|DUF739-family-protein	gnl\|CDD\|283090	pfam05339, DUF739, Protein of unknown function (DUF739). This family contains several bacteriophage proteins. Some of the proteins in this family have been labeled putative cro repressor proteins.	1.65635e-24
NZ_CP009913.1\|WP_038675617.1\|681533_683117_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	1.50454e-86
NZ_CP009913.1\|WP_038675630.1\|688356_689061_+\|DUF1340-domain-containing-protein	gnl\|CDD\|115703	pfam07067, DUF1340, Protein of unknown function (DUF1340). This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 235 residues in length. The function of this family is unknown.	3.29371e-88
NZ_CP009913.1\|WP_080730927.1\|687302_687581_+\|DUF1642-domain-containing-protein	gnl\|CDD\|369557	pfam07852, DUF1642, Protein of unknown function (DUF1642). The sequences making up this family are derived from various hypothetical phage and prophage proteins. The region in question is approximately 140 amino acids long.	0.000234082

>NZ_CP009913.1|WP_038675619.1|683127_685377_+|AAA-family-ATPase
MSEGTFDLIPLLDYIDPSTLSYQEWVNVGMALKQEGYTAMDWDTWSQSDSRYKKGECFSKWDTFQYDGGGAVTGATITQMAKDNGWEPMNKSGKSYELDWDSTIDRDYQIVDKNWVESKEIREPINWHPVQDLVKYIETLFEMTDLVGYVTSTYPIETENGPIYKPTQGNYDRTAGELIKELQSNGDDIGAVFGDYKEEAGAWIRFNPLDGKGVKNDNVTDFRYALVESDSMELGKQYALFKELELPIATLVHSGHKSLHAVVRVDARDYQEYRKRVDYIYQICKKNGLDIDTQNRNPSRLSRMPGVIRNGHKQFLIDTNLGKANYEEWYQWVEDLNDDLPDPETLADEWDHLPDLAPELIHGVLRQGHKMLIAGPSKAGKSFALIELSIALAEGKEWLGWQCEQGRVLYVNLELDRPSALHRFKDVYTAMGIEPKCVANIDIWNLRGKTVPMDKLAPKLIRRSLKKNYQAVIIDPIYKVLTGDENSADQMAHFTNQFDKVATELGCAVIYCHHHSKGSQGGKKSMDRASGSGVFARDPDALVDLVELDLNEDIINARIEKATAKIYQRALQEQANDYYQHYVSLDDLESRYQMQQHFDKGIPDIMKREPYLKEVKDTVRSIEIASAWRVEGTLREFAKFPPRNMWFSYPVHEVDTTGVLADIQLEDAAPGWKKNLDSKKGNESKKKTADERFTTAMQVLFDGITPVELNDVVEYFSTEDKPVSEKTIRRWVKNNGDFEVKNNQILPKK
>NZ_CP009913.1|WP_038675617.1|681533_683117_+|DEAD/DEAH-box-helicase-family-protein
MQLRPYQEEARVKVQQEWKEGRKRTLLVLPTGCGKTIVFSKIIEDRVKMGERVLVLAHRSELLEQASDKLMTATGLGTALEKAENTSIGSWFRVVVGSVQTMQREKRLSQFPPNHFDTIVIDEAHHAISDGYQRVLEHFGEANVLGVTATPDRGDMRNLGSYFDSLAYEYPLVDAIKSGYLSKITAITIPLELDLSTVSQQGGDFKASEIGTALDPYLEQIADEMVKQCKNRKTVVFLPLVKTSQKFRDILNEKGFRAAEVNGESKDRAEILEDFDKDKYNVLCNSMLLTEGWDCPTVDCVVVLRPTKVRALYSQMVGRGTRLAPGKENLLLLDFLWHTERHELCRPAHLIASSPEVAKKMTENMAEDTEVEFSLLEAEEQAGKDVVAEREEALAKQLAEQRKKKRKLVDPLQFEMSIQAEDLADYVPSFGWEMAPPSEKQLKALEKFGIYTEEIGNAGKAGKLLDRLNKRKDSGLTTPKQIRLLEGRGFRNVGMWKFEDASNLINRIAASGWRMPKGIIPATYQPE
>NZ_CP009913.1|WP_038675616.1|680970_681534_+|hypothetical-protein
MTTLNNNFQREFGWDDTIQEDAKEFITLTPGDYVFTVTNFERGRHAPNPQNPGKLPACNKAIITIQVETEEGLATMTHNLFLHSSTEGMLSAFFGAIGQKKRGEPLQMNWNTVVGSTGVCRVGNRTYNDTVYNDVKQMIYADSVDWTKVLNANVAPQGGQQAPQQNQGYQQPQQPQQAPNGGGFGGF
>NZ_CP009913.1|WP_038675614.1|679858_680956_+|ATP-binding-protein
MQITRGIKARAQKVVIYGPEGIGKSSFAAQFPDPVFIDTEGSTDNMDVARLDKPSSWTMLMNEIAFIKANPDSCKTLVVDTIDWAESLAVESVCAQHGKKGIEDFGWGNGYTYVREEIGRFLNSLSELIDLGINVVLTAHAQIKTFTQPDEMGSYDRYELKLGKKTSSQTAPLVKEWADMVLFCNYETIVMTDEKSKKSKAQGGQRVMYTQHHPAWDAKNRHNLPNKLPLDYAGIAHIFNNVQAAQQPAKVQTPPPAPKEPTVPAEETPIQTQTPTPTPQEPVNPAPVERGAYQEPAPFIEPALRDLMIANQVTEQELQQAVASKGYYPIETPISMYDKSFIDGALVATWDRVFEMVKEIRGSEF
>NZ_CP009913.1|WP_038675611.1|678545_679859_+|AAA-family-ATPase
MSIAINKLEIENVKRIKAVKVEPSPTGLTVIGGNNNQGKTSVLDSIAWALGGNRFKPSKAAREGSVVPPSLKITMSNGLIVERKGKNSSLKVIDPNGNKGGQQLLDSFVEELAINLPKFMDSTAKEKADILLQIIGVGPQLAELEIKEKQLYDQRHAIGVIADQKEKFAKEQTYYPDAPKELVSIADLIAEQQEVLAKNGENARKRQNAQQIKTAYEGKLAEVNRLAEQLKAAQAELETLENDLQIATDLTIDLIDESTEEIESNIANIEQTNLKVRANLDKEKAEEEARVQREEYNRLSSEIEAVRKDKRDLLTNADLPLEGLSVNDGKLLYLGQEWDNMSGSQQLMVATAIVRKLKPDCGFVLIDKLEQMDQITLDQFGKWLEDEGLQAIATRVSTGDECSIIIEDGYSLDNKTHQPTTEAKSETPQTPSWQGGF
>NZ_CP009913.1|WP_038675609.1|676819_678541_+|hypothetical-protein
MKTLNTQTVAKPGFTKSKAFGLCGTLAIATALLIGAGQVSADETTAPVADTQPAVSNVYTADNAGNVTVTPSETAAPVESQPIAEAPATTTEVAQPVAETPAAPTTVTKEGDTINVENPNVEVTFPNGNGKYSPFEVEYKDIQIPDDVPVNAGDKVTFDLPEEVKFQTSYEFDVHNPEKAVVGKATADATTNKVTTVFNDYFKTHPLNKSMSLKLDASWTDKVVAGKPVNINFNGTVVTANIGSEQVIGKDELIAKWGFQDKEDPTVINWTARVNYAKRVLNYVSIIDTMSDNQKLVDNYFEIKSIESVDPWIDKGSAMDLVKSISKSDHGFTIKMDRLDHMIYINYKTKLINAVKDSVNPTNKIELKAESDGAISHSYVQLVGGKGDASGENKPEPTFEIPHDAPKYEKPEFEGGIPGIPEVRELPEYTEPIGTVPNEAPVYDKPEWNGGIPGIPEVRELPPFEGGVVPNDAPILDLPELEIPVEPDKPVTPKELPSKPVDAPKTKEAEYATVSYNFVPVSKETPKTAVYGGVLPNTGEKEGIASALGLVVIAAGITTLGLSFKKYNEEKED
>NZ_CP009913.1|WP_164712005.1|676456_676612_+|hypothetical-protein
MKKLFAWLWSKKQQEPEYFFEPVWTPREINDQKYEARQKRERELLAKYGNR
>NZ_CP009913.1|WP_038676967.1|676047_676287_+|hypothetical-protein
MKITYKPAGINETAEWGDYEHLMQRWEGLGKSMAKNLIREMRDNKDFRGYVVNPTHKLVFINYEGFKSFIEWKTRNRFK
>NZ_CP009913.1|WP_038675607.1|675681_676005_-|hypothetical-protein
MIETVSKQARKLLKEMIEVIDDSNCVIYEDYSDLIEQDLLAIEELISLSFIEQYLTNDFRITSRGLIFLRQYKTFSRQLWLTSFWIPLFVSVFGTAITLLIQNWLFN
>NZ_CP009913.1|WP_038675605.1|675300_675537_+|DUF739-family-protein
MRFNYAKLKGRIIEKYGTQEDFAKAIGLTPTTFSFKINGKSSWKNDEIAKAAELLEISPDEIVGYFFNYKVQELEPNN
>NZ_CP009913.1|WP_155274345.1|685829_686030_+|hypothetical-protein
MPPLYHTLPGQDFWYSDSEVLKWIANQPILLNWVKDQLKTAGYITYDRQTGKWTGIDYRDEVGYDD
>NZ_CP009913.1|WP_038676969.1|686022_686418_+|RusA-family-crossover-junction-endodeoxyribonuclease
MIEFFVPMKKIPTTTHQQKKVAVVNGKPKFYEPQKLKEARDLFLTLLAPYTPNEKIEGPIRLTVKWLFPKIKKATHGQYKTTKPDTDNLQKLLKDCMTDLEYWEDDAQVASEIAEKFWSDTVGIYVKVEEL
>NZ_CP009913.1|WP_038675623.1|686414_686642_+|hypothetical-protein
MNYINFFESEVPNWMRENNQMMQQVGFNTPAYWEWVVVSIDKVCEKYNNDTLVKNQFHIIWDFLDEKAREVSGNN
>NZ_CP009913.1|WP_164712006.1|686871_687042_+|hypothetical-protein
MRAKEFALYKGEELLAMGTKREIAKQLGVSASTVGYYGTPVYARRTSENGRRLVEL
>NZ_CP009913.1|WP_155274346.1|687184_687340_+|hypothetical-protein
MRWIVRVARTMDDVKECYFTDKDKALKHIEALKKLSMAVDDATVWMEEIDD
>NZ_CP009913.1|WP_080730927.1|687302_687581_+|DUF1642-domain-containing-protein
MMPLYGWRKLMIRTKWLEVDKETRYTVRVKGIDGYCKYLNRDTKTQKWLFASKTELERFRAHHTRKELEKADFGWVFDCPGVEVKEVDDGND
>NZ_CP009913.1|WP_038675626.1|687645_687963_+|DUF1372-family-protein
MTNLKRSQKKRIYNELAVATILLLVSLAINVTTVLRVVNRPIETVVIHKADNAVELHGKVTGKSKIKNLYTLDCGAYGKFLVSKEQYDSVNVGDDIPSYLRGRGQ
>NZ_CP009913.1|WP_038675628.1|687959_688364_+|hypothetical-protein
MIPRLRAWDKEFKEMVQVDALVFDEQIIKATYKNGNVVKEDLKNYVLMQSTGLKDKNGKEIFEGDILTTGKRTGVVKNHRTLGFYMNDARGNNWWFGSDVDLAEFEDFTRDVARKIGILGNIYTNPELAEVKHD
>NZ_CP009913.1|WP_038675630.1|688356_689061_+|DUF1340-domain-containing-protein
MTKHQYAGLTPELYQRLVSERAALKEAHPRDYKQFFQDVKQCSELQARLTYQAFNNVVVERWKMTPNTAERLEGIISDELFKDLQDYLAKNYTRGTVTRPVVDTTNAGLPEELFKQFQGEVEELRNLHKNSIAKHIMQVKGCDRKEANRIKDSINRCYVERIVLTPLKVIQMEGLFSRDLFSKIAKYVLNNYEWPERLDDEVDRIVLEYRTKGELGRKKPSVKRALYTALAMGL
>NZ_CP009913.1|WP_038675632.1|689399_689822_+|hypothetical-protein
METKKYSRRLNVDFKEYINILTLYFNRGINGNTLLNEKIKKREQELENPDKENSEVIVLRKETDSELMKYRHWLKCTEEYISTSDEIVLKIIKEVYVFRHANIQAMALEYYISERNAYRLVNLWFEGYRDYLWKCALAKK

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Crispr_ID: NZ_CP009913_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009913_3

1574033-1574139

Orphan

Consensus_repeat	Method
GCTTCCAGTTTACCTGTATAGTCTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009913_3

>merge|NZ_CP009913|3|1574033-1574139|CRISPRCasFinder
GCTTCCAGTTTACCTGTATAGTCTGGGTTAGCAGGTTGAACAGTTGCCTCGCCCTCATGACCGGTTTCTTGTGTACCTTTAGCTTCTAGTTTACCTGTATAGTCTGG

>NZ_CP009913|3|3|1574033-1574139|CRISPRCasFinder
GCTTCCAGTTTACCTGTATAGTCTGG	GTTAGCAGGTTGAACAGTTGCCTCGCCCTCATGACCGGTTTCTTGTGTACCTTTA
GCTTCTAGTTTACCTGTATAGTCTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009913.1\|WP_038676462.1\|1565303_1568948_-\|YSIRK-signal-domain/LPXTG-anchor-domain-surface-protein	unknown	unknown	gnl\|CDD\|375450
NZ_CP009913.1\|WP_002884472.1\|1605087_1605726_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009913.1\|WP_038676473.1\|1602761_1605026_+\|bifunctional-glutamate--cysteine-ligase-GshA/glutathione-synthetase-GshB	unknown	unknown	gnl\|CDD\|179427
NZ_CP009913.1\|WP_038676460.1\|1563912_1565121_-\|exonuclease-SbcCD-subunit-D	unknown	unknown	gnl\|CDD\|223497
NZ_CP009913.1\|WP_038676452.1\|1553741_1555280_-\|accessory-Sec-system-protein-Asp2	unknown	unknown	gnl\|CDD\|274739
NZ_CP009913.1\|WP_038676466.1\|1595202_1596291_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009913.1\|WP_038676449.1\|1550924_1553300_-\|accessory-Sec-system-translocase-SecA2	unknown	unknown	gnl\|CDD\|236408
NZ_CP009913.1\|WP_080730935.1\|1576101_1581297_-\|YSIRK-type-signal-peptide-containing-protein	unknown	unknown	gnl\|CDD\|131384
NZ_CP009913.1\|WP_038676446.1\|1549403_1550912_-\|accessory-Sec-system-glycosyltransferase-GtfA	unknown	unknown	gnl\|CDD\|131964
NZ_CP009913.1\|WP_038676456.1\|1558259_1560353_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133037
NZ_CP009913.1\|WP_014634783.1\|1553292_1553739_-\|accessory-Sec-system-protein-Asp3	unknown	unknown	gnl\|CDD\|163423
NZ_CP009913.1\|WP_038676470.1\|1598346_1600215_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP009913.1\|WP_038676468.1\|1596729_1598253_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP009913.1\|WP_038676475.1\|1605679_1607194_-\|DUF1310-family-protein	unknown	unknown	gnl\|CDD\|337977
NZ_CP009913.1\|WP_022496484.1\|1556938_1558165_-\|accessory-Sec-system-protein-translocase-subunit-SecY2	unknown	unknown	gnl\|CDD\|237095
NZ_CP009913.1\|WP_038676453.1\|1555266_1556838_-\|accessory-Sec-system-protein-Asp1	unknown	unknown	gnl\|CDD\|293598
NZ_CP009913.1\|WP_002884295.1\|1607301_1607862_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP009913.1\|WP_038676458.1\|1560736_1563916_-\|SMC-family-ATPase	unknown	unknown	gnl\|CDD\|223496
NZ_CP009913.1\|WP_038676477.1\|1608073_1610479_-\|glycogen/starch/alpha-glucan-phosphorylase	unknown	unknown	gnl\|CDD\|340853
NZ_CP009913.1\|WP_038676472.1\|1600204_1601950_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055

Protein	Function_ID	Function_description	E-value
NZ_CP009913.1\|WP_038676462.1\|1565303_1568948_-\|YSIRK-signal-domain/LPXTG-anchor-domain-surface-protein	gnl\|CDD\|375450	pfam17965, MucBP_2, Mucin binding domain. This domain is found in bacterial cell surface proteins that interact with mucins. The archetypal member of this family is the Mub-R5 B1 domain. This domain has a beta-grasp fold.	1.5595e-18
NZ_CP009913.1\|WP_038676477.1\|1608073_1610479_-\|glycogen/starch/alpha-glucan-phosphorylase	gnl\|CDD\|340853	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins. This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0
NZ_CP009913.1\|WP_038676473.1\|1602761_1605026_+\|bifunctional-glutamate--cysteine-ligase-GshA/glutathione-synthetase-GshB	gnl\|CDD\|179427	PRK02471, PRK02471, bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB.	0
NZ_CP009913.1\|WP_038676460.1\|1563912_1565121_-\|exonuclease-SbcCD-subunit-D	gnl\|CDD\|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	5.09795e-54
NZ_CP009913.1\|WP_038676452.1\|1553741_1555280_-\|accessory-Sec-system-protein-Asp2	gnl\|CDD\|274739	TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP009913.1\|WP_038676468.1\|1596729_1598253_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	8.17723e-89
NZ_CP009913.1\|WP_038676449.1\|1550924_1553300_-\|accessory-Sec-system-translocase-SecA2	gnl\|CDD\|236408	PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP009913.1\|WP_080730935.1\|1576101_1581297_-\|YSIRK-type-signal-peptide-containing-protein	gnl\|CDD\|131384	TIGR02331, surface_protein_R28, Rib/alpha/Esp surface antigen repeat. Sequences in this family are tandem repeats of about 79 amino acids, present in up to 14 copies in a protein and highly identical, even at the DNA level, within each protein. Sequences with these repeats are found in the Rib and alpha surface antigens of group B Streptococcus, Esp of Enterococcus faecalis, and related proteins of Lactobacillus. The repeat lacks Cys residues. Most members of this protein family also have the cell wall anchor motif LPXTG shared by many staphyloccal and streptococcal surface antigens.	1.40205e-17
NZ_CP009913.1\|WP_038676446.1\|1549403_1550912_-\|accessory-Sec-system-glycosyltransferase-GtfA	gnl\|CDD\|131964	TIGR02918, lipopolysaccharide_biosynthesis_protein, accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system. [Protein fate, Protein modification and repair].	0
NZ_CP009913.1\|WP_038676456.1\|1558259_1560353_-\|glycosyltransferase	gnl\|CDD\|133037	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS.	3.53869e-58
NZ_CP009913.1\|WP_014634783.1\|1553292_1553739_-\|accessory-Sec-system-protein-Asp3	gnl\|CDD\|163423	TIGR03711, acc_sec_asp3, accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	1.84447e-49
NZ_CP009913.1\|WP_038676470.1\|1598346_1600215_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.85517e-171
NZ_CP009913.1\|WP_038676475.1\|1605679_1607194_-\|DUF1310-family-protein	gnl\|CDD\|337977	pfam11311, DUF3114, Protein of unknown function (DUF3114). Some members in this family of proteins with unknown function are annotated as cytosolic proteins. This cannot be confirmed.	6.25459e-14
NZ_CP009913.1\|WP_022496484.1\|1556938_1558165_-\|accessory-Sec-system-protein-translocase-subunit-SecY2	gnl\|CDD\|237095	PRK12417, secY, preprotein translocase subunit SecY; Reviewed.	7.79999e-141
NZ_CP009913.1\|WP_038676453.1\|1555266_1556838_-\|accessory-Sec-system-protein-Asp1	gnl\|CDD\|293598	pfam16993, Asp1, Accessory Sec system protein Asp1. Asp1, along with SecY2, SecA2, and other proteins forms part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. Asp1 is predicted to be cytosolic.	1.22344e-176
NZ_CP009913.1\|WP_002884295.1\|1607301_1607862_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.03175e-07
NZ_CP009913.1\|WP_038676458.1\|1560736_1563916_-\|SMC-family-ATPase	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	1.42115e-62
NZ_CP009913.1\|WP_038676472.1\|1600204_1601950_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.47102e-162

>NZ_CP009913.1|WP_038676462.1|1565303_1568948_-|YSIRK-signal-domain/LPXTG-anchor-domain-surface-protein
MRDMFNKRQRFSLRKYSFGVASVLLGVSIFSNAQGAQADETVAPTTAGMETTAEPDVVVEQSTPTTASVAPATTENAPSSVSTVALASEQPHSAAQDSQAASTTSQTAASSEVASQAASQASSESAAATASSVATSAQALNSTAVAEAPAAGQVSAQTSAAASVATAAETASAESTTNAVNSVLKVATSELAVTSSELNAAEASLNSENLINAMGLAVSNRSLRTADAVAVLTNAGAGSTNPDLTNLGYKLDYLPEKQQYFVNIDYINNLKVGRDNRGGLRPYDFIVNGNFFVTPNYANLGIIDYVDEAGNKIPGSSTYRINNSTETITANGKTYNKIYDAGVTELPPVPAGYRIKYASADKSKANAYVDVLKSERQYDYNNGIATIRSERAWDRNQSRVVDLVQFANGSQGLDASIDANGGGQYLAPGYRYHIIVEKDTKDVTKATSQTVTYTGADAKTPATNTQNDFSFNGKEDPTTNTTTWTETTHTYGTVKTPVVIGYYADKAVAGGKTVTPDAPNATDTVTYKAFGKFIAVDENGNPIPGVSTTAYTNDPNDATKMIAIDKTLPSIPGYTVKVIPASPSNPGEDTRVVYVAIVNDVTKATKQTVTFQGAGDKTPAADVKSDYTFAGKDNQATGKVTWHETSHTYGTVKVPVVNGYFANKAVAGGKTVTPDAPEATDTVTYKAFGKFVIVDENGNPIPGVSDTAYINDPNDPTKMIAVDKNLPTIPGYTAKVVPATPGDLSSNTKVVYVKNDQKASVVYRDETSGSTLETVALAGKSGEAVNYSTAERIKHYQGLGYVLVTDGYPAGASFDLDSTVDQAWTVSFKRVALDFNPDNAHEPGTPIYPNQPNGPKWPAKDAYLKDVTYTVHYASKDSNAKLPADSVQKAQWKRSLTLDSVTGDILTAGEWKADKTKFDLVITPMVKGYFADKGRVASQDVTMDSKVETVTYTKFGKIIAVDEKGNPIPGVEAVTYTNDPNDPTKAAMTLVPEVKGYKADKTGVTPSNPGEDTKVVYKVVNAQPAKPTVNKEVGTIVVIYRDEYGNQIKMPLVITNSVGSEVNVHGDRYIYRNGVKYELIRQEGKSTDKMTEGQTVVTYIYRKVEDGSTPSNGNGGQSGSSTSKAVKATSNGSKGSKGSGSGSAADGASDGKGSDKKKSGNKDGKKADGSDKAKEGDEQLPVTGESDNNLAAMGVVVMGLMSGLAAMNRRKNQD
>NZ_CP009913.1|WP_038676460.1|1563912_1565121_-|exonuclease-SbcCD-subunit-D
MKFLHTSDWHVGRTLNGWSLLEEQEWAFQQIVDLAISEQVDGVIIAGDLYDRAVPPVDAIKLFNKTLARLVLEEQIPVYAISGNHDGAERLHFGRDFFQPQGFHLSTRLEEAFEPIELEACQIFLLPFIDPIDARIYYKDDENKEIQGIGDALAYILEDMEKAFDPDKAHILVTHFAVSKKDDSDGQSLRELMLSETSNTVGGLTNVTSDLFKAFDYVALGHIHTRFASPSQRVQYSGSPVAFNVKEAKRKEEKGVYILELDATGDLSQTFHPLEVRRPIVALQEPFETLMLPEFYKEQPCQKAWFAFDIQLSSRKELEGINVRARLEEIYGTDIVEITFSRLGDVREESLTVDQHLKDLEMQSPQEIVSDFYQTVTGGDVLSERQTALVESIFEEIGRSGQ
>NZ_CP009913.1|WP_038676458.1|1560736_1563916_-|SMC-family-ATPase
MRPVQLELTNFGPYRKEVINFTQFDHAPLFLIGGDTGAGKSTLFDAMTVALFATTSGDRNVEEMRSTFAGPEDDLTKVTFYFQQGKHLYRIERVLQQERAKRGGGTTMQKATASLVIVDKIGGQEIEKLGDKIKEVSDQIEQILGLNAEQFKQIILLPQNDFSRFLKEDSKTKTQILKKIFGTGIFDRFQKSLEERLRQSNKDMDKRQAQLDGHFASQVWSEEELAVLAQTPASEKLARLEELLSQRQESLTEQKSILKDAHEDLVKLQKSLQTAQDLSKSFQELKQAKERYRLEIEEGAQEQAEAKAHLEELQFAQGLQETISSLKQYQKQLLQLEQDLEIAQEELSEKQQAFEGVKAQKEALAAQSKDSLQKEEELETWKEDIIYAQSLVREQEKIKHSRTNYKQLEETYQQASKKIETLNKSLSDLEANRLSLDSLHEAEKLLQSVGYSVDNQLAQDLKEIEDLKQELAKTEKRQQGLSLDIDQAQESLKELEDQLATTLASRRQLMIAQLQAELEDGQPCMVCGSIDHPKVDGTQANEAALKDLMNQVEELQAQKERQVATLSNRQATLSEVESKRQDLLDQVAKVKLTLEKHYLELQEQVKGQFDFDFAEDYEADCGQTILRKVEQYYQELHKRYDKEEADRLHYQDELAKVQEKSIDLAKAYQEAKAALDQAKERLKELQEAHQELESVEVYQERISLAKQELDLYNKQVKENSEAYNQLHADIQGIRGQLESLTKSKENASQETKRLSAELDQSLMAEGALTNDLEQIQLWLLEVNKQAIPELQAQLTSYQTLKQELKAQIVKGQELIKDQEKPDLGNLTQAVEASQESYDKQLAQVSVMEQGLKDATATYQAAKTLQDSNQEAFKAHQELSDLVKVVKGENTALTGRLNLEVYVIRQYFQQILDYANANYIGLLTDNRYSFVLSEEGRRARDHFGLDINVYDQLTGSERSVKSLSGGETFIAALAIALSLSEVVQNTSKGAVVEALFIDEGFGSLDKEALTKAISVLEQIGENRMVGVISHVDDMKEGIAQQLAIIKSHDGSSRIKIVDKG
>NZ_CP009913.1|WP_038676456.1|1558259_1560353_-|glycosyltransferase
MTEKISVIIPVYNVENQLQTCLDSVLGQTYQNLEIILINYGSIDNSDAICRSYAARDSRILYFKKDNGGLSDARHIGIRQAKGAYVTYVDAEDWVEPTYLEELYKALQSHKADIAVANYSVYKESEDLFYFYIKDEDYYEQVYSPAQIIDGLFEETNNINIALISATGKLYKRSLFNDLLFPKEHAGEDGFFNLKAYLMSERTVYLNKGLYVYRESPEMPSATWMQDWMMTLVYAMEERLAIVASHGFPLEKYMVTYRQMLEACLKNVEEQGLTDSDAYRSIQEKFQVLSLAPQRYETKKRAIVLAANYTYVDQVLTTIKSIVFHHRNIRFYLINDDFSQEWFRGLNRHLAAFGSEVINCRVDSSHIKQYKTNSNYASYLRYFVADFVSEERALYLDSDMVVTGSLEDLFTLDLQGRPLAAVRDYAIQVQDRQAMFDAGFMVIDTAYWKQYNMRRHLIDMTSEWHDKVPFAEQSILNMVFRNNWLPLSFDNNYAVTKSSLAGFHLPNGQDYPKVLHYASHRKPWLPLACQAYREVWWFYAQMDWSGVAENAALLPLSEDMIYPKGRPFTCLVYTNISEIPHLTDLISALPKVQFKIVSRQHVTDKLAQLITYPNVTVYSAIAGLNGLDLELVRTSDLLLDINPGRKVVEILDAFRFENKPILGFEDLKSTKHNQQTYSRDRWKEMAETIRQMRKKSL
>NZ_CP009913.1|WP_022496484.1|1556938_1558165_-|accessory-Sec-system-protein-translocase-subunit-SecY2
MKKISQSIITKRVLWTLFFLFIYCLGNQLVLPFVDLKNANIFGGTIGSLAFSSAMMGGNLRSMSLFSVGLSPWMSAMILWQMFSFSKKMGLKNLPIEIQDRRRMYLALGIAIVQSLAVSLNLPIVSGVNASLAIFMNTILLIAGTFFLVWLSDLNSLFGIGGSIVILMASMMANLPYQIMDSIEKLGIGWNVLLPLILFSLVFLYVSGVVQRARYRISINKINIHNRFKQYSYLDIMLNPAGGMPFMYAMSLVSIPQYVFMLIQFIHPENKWTSGAIKALTVGQPLWLVVYLVMLFVLGLAFAFVNVSGEQISERMRKSGEYIYGVYPGQETSAYINHLVLRLGFIGALYMLFMAGAPMLIILVNPDYLQLSMIPGTFLIFSGMIYNVNEEMKALKLNTSYTPLFENV
>NZ_CP009913.1|WP_038676453.1|1555266_1556838_-|accessory-Sec-system-protein-Asp1
MYYFIPAWYGQTDEFWKTVIDPWYRIRQKIEFDDSLHQVRIFQDEDLAPQLLLLAYQPHLRYFLHRHDVLEVGYTAIFDLIQGITDEEMKNLQVTDLEWPEGSTFVHTPFAIVVQCQHKRYAEIEFGSEGFIGMIRYYKDEQIIREDIYDDRGFISSSLYYEDGQPSYRNYLNAKGVWQLCHFFDGRGIVANPRTEGRFNKSYYGDLSEVIWEFLTKFLEEKVEADDRFVIASDLRHNKHLFDHLPAANTKILTWFAERNQDDSIDTYAAFLPQVDLLIADRYDYLEQLQVAYPEEAKKLKHMASFDTRLALGTSQRVKESKIFYQVDFDQLDLEAVYQVLAFVAKYPKTQVEFGAFNANPEQLASLQNQVERMIEERLSPEVFEEVVESSGAENKLEENNEIVSRFSFQDLRDETALIKALQFTRLIVDLSKEPNRYTQIAGISAGIPQINRVASEYVTHQENGYILKHLSDFEKGAYYYLGQLNNWNRSLIYSIEKIKENTGDRLVQKWENWLKEEQNDQG
>NZ_CP009913.1|WP_038676452.1|1553741_1555280_-|accessory-Sec-system-protein-Asp2
MTKDNRLKILQVGPSNWSEIQEIPENMKWYYCNLGQLETLQETIEEDEIKTFTAVIVDSLAGLEELMAIKEHLIPHTIFFDQTIEVSDEILAQFIKEMCAVPTDFSNQGQLLFTLSKALFSGQYGDKMFPFTTQVNPNFTGQVTYHGYENVILNGDYGQDFSPVLDWTYNVRASKENPIELWLEFEKEETCECRLILNLLPEGSVAGIFKTYIVSEEEMRKGAIVLDEDTTFLLSASLEMKGQGQITIGGLHQRLTRFQFGKFVLGGGILHDSKRQEINYFFYPGDFKPPLSVYFSGFRPAEGFEGFGMMKGMGTPFLLFSDPRLQGGAFYMGTEELENSIKDTIQHYLDYLGFDNSQLILSGMSMGTFPSMYYGADFEPHAIIMSKPLANVGTIGNRARLLAPEVFPTGIDVLHLQTGRLDNEGVEALNQKFWDKFEKADFSNTTFGLSYMKDEDMDPTAYEDITKSLYYSGAKILSKGTSGRHNDDSYTATTWFVNFYRMILENDFGRKE
>NZ_CP009913.1|WP_014634783.1|1553292_1553739_-|accessory-Sec-system-protein-Asp3
MFRNKKSEILWGLNHKAYMYGSKIVKRQDGSVQFYNPLVPSGTEIQSWVAIQNYQAGRTQPALPLLKKGHSYDLTANLEAVPTGSVFLKVSFLDRYDNEIKQLIEKSTQMTFVYPHEAYTYRISLLSAGVKELDFYNLKLEETGEEHV
>NZ_CP009913.1|WP_038676449.1|1550924_1553300_-|accessory-Sec-system-translocase-SecA2
MFKQLNPILPVKEILKEINGLADEMAGLSNLELKNKTQEFKERLAQGESLDDLLPEAFAVVREADKRVLGMFPYDVQVMGGIVMHQGHIAEMNTGEGKTLTATMPVYLNALSGEGAILVTTNEYLAIRDAEEMGQVYEFLGLTIGVPCVEGSNEMEPAEKRAIYQSDIVYTTNSSLGFDYLIDNLASNQDGKYMRPFNYAIVDEVDSVLLDSAQTPLIISGAPRVQSNYYGMMDTLMTTLVEGEDYIFKEEKGEVWLTTKGAKAAENYLGIGNLYDEGNSTFARHLLFSLRAHLLYKKDKDYIIRDGKKGPEVVLLDKSTGRLLELTKLQGGLHQAIEAKELVALSQETRAMASITYQSLFKKFKKISGMTGTGKVAEKEFLDTYGMKVIQIPTNRKKQRIDYPDKIYATLPEKVFASLEYVKHYHEKGNPILIFVGSVEMSELYSSLLLREGIAHNLLNANNAPREAEMIAESGQMGAVTVATSMAGRGTDIKLGKGVAELGGLVVIGTERMESQRIDLQIRGRSGRQGDPGMSKFFVSLEDDVIKKYGPSWVHRTYKEYAISDHIEPKELTGRKYRKLVEKAQEASESSGRTSRRQTLEFAESMNIQREMIYAQRDRLIYHNQGLDTVIDEVLDDFIDQAMAEEDFSKAENLYHFILRNISFRINEIPKDLDLNNREQVLELIYQFAYRELDAKKQELKTKELNEYFQRLSMLKAVDDNWVEQVDYLQQLQMAIGSQQLSQKNPIVEYYQEAYKGFEAMKRQIRKDMVRNLLLSQVQVTKKGDIISHFP
>NZ_CP009913.1|WP_038676446.1|1549403_1550912_-|accessory-Sec-system-glycosyltransferase-GtfA
MTVYNINLGIGWASSGVEYAQAYRAKIFREMGQEAKFVFMDLILGDNIEHMTSKIGFADDEIIWLHSYFTDVKIAPSSISLAEIEAILPANPERKEVAGCLIRYHYPQDDMVVACNLRAMDEDAVETVSYFVNDKLLRKDFYSYTRYCSEYSAPKDNQAKVYQRRFYNEDGSTAYDMIVGDNNQDIYRFPDQVLYGKQEFLRYFFKRLALTKDDVVILDRETGIGQLVFEEAQAARLGVVVHAEHFSVNQTDDNYILWNNYYEYQFTNADKVDFFIVATDRQKEILQEQFRRYTNHNPKIYTIPVGSLPELVGQDKPRKPFSMITASRLAQEKHIDWLVRAVIEVHKTLPDITFDIYGSGSMDAKLREIIVEAQAGDYIRLMGHADLTDIYSQYEVYLTASTSEGFGLTLMEAVGSGLPMIGFDVPYGNQTFIQDGANGYLLPVAENHVVDVITKSYKDAIVRLYEEGKIEAMRQKSYDLAKGFLTSQVKAAWKQLLEEVRS
>NZ_CP009913.1|WP_080730935.1|1576101_1581297_-|YSIRK-type-signal-peptide-containing-protein
MDKDLFNEKKSRFSLRKLNIGVCSVLLGTLIMIGGTAQADENTETTAAPITPVAEAGETTASLVETRTVAETTPAATNPVESATVATSAEAPATVATPATSTAPATTTESATSQAAATSEAPASTSAAPTSETAQASTSEAAQASNSSEAEKPRVRSRRAVPAAASTSATEASTKNVSTSIEAGDEYVTIRTDAASTVKVTVDGQEVSINGADGVYTFKRPSAGGTVVATATDASGKNATKQLIVSPSTVNGVIKPSDSSLTITNKFDTTGITTDKESPYVVKNAGVEFNKVNDDGTISLTGTSWTRLAGGWAKDKAFPLGAHMILNFQNPTFYENIEKITIKPTASGSAQSFTPHEDGSVWSVPIANNTVASGGIGAAYDHPITITLKNGKTLNDLGLANTPLSFSSAWITGKDYGRVIPNKLVRESIDNSWFIASDNAKKTASDNGLTNAFTGTPGKGVNTQPTLKVLPRFTSDGKADSIELVYTMKVSAAMGVVNLGSNTFQSVPYIEQELPKSLLPYLDLNETYIYKSDADGSAVSGVQKTKVVMDASGKLDTRKTDAISIATKSNPSQSDVDKVRNYIDKNILGTASGQLGSYTISYKIKDTVDSVELAKKLNAEIKKNNGMLLFEQWMERGVKPNLNAIQRSWKGNTEGVHQGSYANAFLDTNLLIVNAPKNQTYDVTYSKSVVTAGDTTQPQIPLVRDVEGKEVSVPSGTTFKAGTLPAGIDSVSVDESTGAITSKTSANATPGLINVPMLVTYPDGTTETVNVPIEIKAKQTDADKYEPTAKDQTVNIGETPDAKGSIGNVSDLPNGTTFEYKTPVDTTTAGEKDATVVVTYPDGSKDEVPVKVTVKDPRTDADKNTPTAKDQTVNLGETPDAKKSIGNVGDLPNGTTFEYKTPVDTTTAGEKDATVVVTYPDGSKDEVPVKVTVVDPRTDADKNTPTAKDQTVNVGETPDAKGSIGNVSDLPNGTTFEYKTPVDTTTAGEKDATVVVTYPDGSKDEVPVKVTVKDPRTDADKNIPTAKDQTVNIGETPDAKGSIDNVSDLPSGTTFEYKTPVDTTTVGEKDATVVVNYPDGSKDEVPVKVTVKDPRTDADKNTPTAKDQTVNVGETPDAKGSIGNVSDLPNGTTFEYKTPVDTTTVGEKDATVVVTYPDGSKDEVPVKVIVKDPRTDADKNTPTPKDQTVNVGETPDPKKSIGNVDDLPSGTTFEYKTPVDTTSEGDKDATVVVTYPDGSKDEVPVKVTVVDPRTDADKNTPTAKDQTVKPGDQPNAKDSIGNVGDLPEGTTFEYKTPVDTTTEGDKDATVVVTYPDGSKDEVPVKVIVKDPRTDADKNTPVAKDQTVKPGDQPNAKDSIGNVGDLPEGTTFEYKTPVDTTTEGEKDATVIVTYPDGSKDEVPVKVTVKDPRTDADKNTPVAKDQTVKPGDQPNAKDSIGNVGDLPEGTKFEYKTPVDTTTEGDKDATVVVTYPDGSKDEVPVKVTVKDPRTDADKNTPVAKDQTVKPGDQPNAKDSIGNVGDLPEGTKFEYKTPVDTTTEGDKDATVVVTYPDGSKDEVPVKIIVKDPRTDADKNDPTAKDQTVKPGDQPNAKDSIGNVGDLPEGTTFEYKTPVDTTTEGEKDATVIVTYPDGSKDEVPVKVIVKDPRTDADKNTPTVDNQETKVTPAPTVHKPAPASDTVRVASKATPAATDTKQALPETGENTSLLATLLGGLMTMAGLGLAGKRKKED
>NZ_CP009913.1|WP_038676466.1|1595202_1596291_-|hypothetical-protein
MENKFVKKPTPKGDMTTKIVFIGLLVALLFVIAGTAIFFAVSGSSKATKGSASSSKSSTTVYSGSNAEDPLFKITLTTFGDNKEFLLVTPNPGHDRNMFNIVGVAGQYLVTQEYKGDVSGKKNAKGETLYKYDYFNIYVYDTEKTNQKPKQIDLLKLAKKAGDEDYLNQAGLRLFMLNDQAYLQMPFGASSADFASNKKYLNLKTQKIEEMNISANSNTLDSELEYANVDMRKTLEPFGLEMWPGATNGKDFDNPSGTPIASLPALYYISEKDRSLNMDSTNFAKEQKEAYEAVKTKHARIYTLPSKINNESWFNTLLHWMAPEGQDAYELPVRAFRPTQEEGKVKSYQELQSWNDNHIRKK
>NZ_CP009913.1|WP_038676468.1|1596729_1598253_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MIQIQHLTITHNKDLRELVHDLNLTIALGEKVAIIGEEGNGKSSLLALLVNPIAHFDHLSYEGTINKTDSPQVYIPQQISDSLQSLTLNDYFFADTYDLDYATLYRLADELHFDSERFASSQLISTLSGGEKLKIQLIRELARSHDIIFLDEPTNDMDLTTMTWLKDFIKHSDETIVYISHDEDLLSQTADTIIHLELLKRRRQARTSVEHLDYDNYSQHRTDSYQQQMQQAKTEKKAYDKAMAKHRRIKQNVQTTLRNTHDSTQGRLLAKKMKAVLSQEKRFDRLAQDMTQMPDKEDSIELFFSHIDPLPQGKYLLNLDEKQINIAPHLTIDHLKLSLKGQEKIGIVGDNGCGKSTLLHYLYQKLSQKTDLTIGYMPQHYDTILPLDLSLIAFLSKTGDKSEREVISSHLANLNFSHDEMNHAISDLSGGQKGKLLLLHLVLESPQLLILDEPTRNFSPTSQPQVRQLFENYSGAILTVSHDVNYLKQVCQKIYRLDSQGLEEVEI
>NZ_CP009913.1|WP_038676470.1|1598346_1600215_-|ABC-transporter-ATP-binding-protein
MQNKKKANWGSLARLLRFLWQDYKLSLSIAFVLIVVASLATVNLTASIQSLVDVYVQPMLKSGSHDFGPLLHFLTSVAVFCLIGVIANYVSSLLMATISQDSLRSLRNQLFARMQKLPVRYFDTHQHGDIMSIYTNDIDALRQAVEQSIPQLLQTAITLIGVTVTMLTVSPLLFIVVLVMVGIMFMVIKNVSAKSGRYFGEQQKNLGIENGFIEEMMSGQKVVKAFVHEEESMADFDKINEQLFESSYLANRYANVLMPILGNLGNVSFVLTALVGGLFALNGVGGLTIGGLMAFLQLNRSFNGPITQVSQQLNFVLMALAGADRIFDLLDEPEEVDQGKVTLVNYELVDGQMVVTDKKTNLWAWKHPRPNGDYELVELVGNVVFQDVDFSYDGKKQILHDVNLYADKGQKVAFVGATGAGKTTITNLINRFYDIQSGVITYDGIDVKLIEKDSLRRSLGIVLQDTHLFTGTIADNIAYGRADATREEILEAARIANVDSFVQHLDNGYDTVLTDDGAGLSNGQRQLIAIARAALANAPVLILDEATSSIDSRTEKMVQEGMDRLMEGRTVFVIAHRLSTIVNSDVIMVMDHGRIIERGDHDSLMEQGGTYYRLYTGGLEID
>NZ_CP009913.1|WP_038676472.1|1600204_1601950_-|ABC-transporter-ATP-binding-protein
MFQTLIAQIKEYKKPSILASLFMTLEVMFEISIPFVMANLLDKGVQQSNMSNIWLYGGLMLVCAFLSLFCGMQSARYAAFASAGFAKNLRQAIFKKVQTFSFENIDKFSAGGLVTRMMTDVTNVQNSYQMIIRICVRAPLNLIFAIAASFLINGEMAWIFVGVTLFLGLVLAIITKIVYPLFTQVFEAYDNLNNSIKENITNMRVVKSYVKEQEETDKFKKASRRIYKMFMRAIRVVVMSNPAMMLSMYASFLMISWFGAHLIVVGKLSTGELTSMFSYTMTILISLMMFMMIFVMLSISMASVERINEVLNTESTIVSPENGLTEVTDGSISFDHVDFSYTDENGDKTHVLKDISLEIKSGEVIGILGGTGSGKSSLVQLIPRLYDVEAGQVRVAGRDVKDYDLDSLRKQVAMVLQTNVLFSGTIKENMRWGNKQATDEEIIEACKIAQADEFIQEFKDGYDTKIERGGANVSGGQRQRLCIARALLMNPKILILDDSTSAVDTKTDSLIRQGLASSLKDTTKIIIGQRISSIQDADRIVVMDDGRIDAIGTHDELVANNAIYRDVYKMQTQGKGVADAE
>NZ_CP009913.1|WP_038676473.1|1602761_1605026_+|bifunctional-glutamate--cysteine-ligase-GshA/glutathione-synthetase-GshB
MTINQLLQKLEPTSPILQANFGIERESLRVDRQGKLAHTPHPSCLGARSFHPYIQTDFCEFQMELITPVAKSTTEARRFLGAITDVAGRSISKDELLWPLSMPPRIKAQEIQVAQLENEFERHYRNYLAEKYGTKLQAISGIHYNMELGKDLVEALFKESNQTDMIAFKNALYLKLAQNYLRYRWVITYLFGAAPIAEQGFFDQEVPEPVRSFRNSDHGYVNKEEIQVSFASLEDYVSAIENYIEQGDLIAEKEFYSAVRFRGQKVNRSFLDKGITYLEFRNFDLNPFERIGISQTTMDTVHLLLLAFLWMDAPENVDQALAQGHALNEKIALSHPLEPLPSEAETQNITTALDQLVQHFGLGDYHQGLVKQVKDAFADPSHTLAAQLLSYIKDKSLADFALDKALAYHDYDWTAHYALKGYEEMELSTQMLLFDAIQKGIHFEILDEQDQFLKLWHKDHVEYVKNGNMTSKDNYVVPLAMANKTVTKKILADAGFPVPAGDEFTSLEQGLAYYPLIKDKQIVVKPKSTNFGLGISIFQEPASLDNYKKALEIAFAEDTAVLVEEFIPGTEYRFFILDGRCEAVLLRVAANVVGDGKHTIRELVAQKNANPLRGRDHRSPLEIIALGDIEQLMLTQQGYTPDDILPEGKKVNLRRNSNISTGGDSIDVTETMDSSYQELAAAMATSMGAWACGVDLIIPDETQPASKENPHCTCIELNFNPSMYMHTYCAEGPGQAITSKILDKLFPEVATNQN
>NZ_CP009913.1|WP_002884472.1|1605087_1605726_-|hypothetical-protein
MGLTAFTKKPTSPKVEIKKTETLDSVLVAKNFYRVRDAYAIKLYGQDEGMSFDVAGQRLFGSNIAIKDGLLYGSSLGDLTIEAYFQGEVSYLLEATQKLPVDKNRIKANHYSQDIVLNKVWTSLEGQETSNSIITQFQDKTLLKLRISYNKEFLPTKIQGFYNSQTLNGWRDLFYIDYPYSDQEAFNQAQDAYIQHIQYMETHPEEEAGEFG
>NZ_CP009913.1|WP_038676475.1|1605679_1607194_-|DUF1310-family-protein
MKKVILQYLASALAVILILGLVVFNRQRNHSLVKKVKDPEISYIYQDSLENIDRLALSQAGVIQSYQLDALSVRKEDGKIYLVLHINHSYDMQVNLVIKSDIYGDLSVVQATPSKALKLALEDASYQKRLTLISQKADAIMARDHWDQGIKPAYVAQVRSKMKKTSLTQLDKVLRDIDQESKEVGSDTYTAFFQASQLPNHDKLNLVMEHMQVYVDKYQFLQLGKSGYKFSKKLEPTSPFYSYFREAIMETYQTDLGLGVDDLGIKLHLFRSWIDKQSMDYIRTNYKGKTDLDKLLAYSKDKKIHLDYTTGASYHNRSLGDFTYPQNMKIQLPQTSVMGPYGVSNSRFIEFIVNMDTGRFVSEWNVYKKRKDGSIDSNPKHYKIEDGADIADTDSANYGLSKGLNADLPAYLNNSHTYLDVRHPADNAIRRKMVKKWKNAKNVLNGGRYADIVKKGGLKDLETWRQVKAEDRLQVYNAYLDYIRSHLVLNGFDSFYQETYKPQG
>NZ_CP009913.1|WP_002884295.1|1607301_1607862_-|GNAT-family-N-acetyltransferase
MALRSQLITKEFPELDRVERLNNEAFPEEERIPLSDFLKLDGRDDYHFFAFYDEDDFVGFASVLYNAKVFYVSFFAIVPQMRSHGYGSEIIDKLVDFYGPSRSMVLEVERLDEPNDNPEQRVARWDFYKRNGFKTSNAFLEYEGLSFEILYRGDHFDEKAYRDIFHKLQENAYFDFSIKHRRLSDL
>NZ_CP009913.1|WP_038676477.1|1608073_1610479_-|glycogen/starch/alpha-glucan-phosphorylase
MQLENLTKEQFIRDFKDTLHQEQLIKVAKATPTEIFTALAGLIRKYYTNTWIERNHALSDNQEKIAYYFSIEFLPGRMLETNLLNLGILDPVKEGFAELDIDFREVVEAEHDMALGNGGLGRLAAAFMDSLATTGYPGFGNGLRYRYGLFKQRIVDGYQVELPDGWFGSTGNVWETRKDHDIVYVKLFGDVVLESNEDGRFVPTYKNAQVLRAVPYDVPQIGYKNGVINNLRLWDVEIPEEYELDYPTLDARRRVKDITAILYPDDSTIEGKELRLVQEYFMTSAGLQTIIKSYLKMGLPLKDIHEKISVHINDTHPAVAPAEFMRLLLDEYGLSWEDAWNATVKTMSYTNHTILQEALEKWDQQLFKRVLPRVYQIILEIDNRYIAEMAGRGIAADVIERTRIVKDNQVHMANLAIIGGHSVNGVAKLHTELLKEDTLHDFYTIYPEKFNNKTNGIVQRRWTQIAAPELSAAIDDVIGDGWRNDIHELENLTTYLDDKEVLNQFYQVKKTAKQRLADYIKETTGVEVSIDAIFDVQVKRLHAYKRQLLNLLHIIKLYWDLKDNPDKDMVPRVFIFGAKAAPGYHFAKSVIKLINEVANLVNNDESLQGKLKVVFLENYRVSLAELIIPAADVSEQISLASKEASGTSNMKFMMTGAITLATLDGANIEIKDEVGDENVVIFGMDKDEVYEHYARHDYYSRAVYENNPVIRRVVDTFVNGTIPNAQSEGTEIYEALITHNDEYFLLEDFAAYVEAQEKIDALYRDHDKWARMSLANIAKSHKFTSDDTITEYAKEIWELKK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP009913_2	2.1\|685448\|57\|NZ_CP009913\|CRISPRCasFinder	685448-685504	57	MK448979	Streptococcus phage Javan534, complete genome	13372-13428	1.0
NZ_CP009913_2	2.1\|685448\|57\|NZ_CP009913\|CRISPRCasFinder	685448-685504	57	MK448799	Streptococcus phage Javan535, complete genome	13372-13428	1.0
NZ_CP009913_2	2.1\|685448\|57\|NZ_CP009913\|CRISPRCasFinder	685448-685504	57	MK448800	Streptococcus phage Javan539, complete genome	13373-13429	1.0

1. spacer 2.1|685448|57|NZ_CP009913|CRISPRCasFinder matches to MK448979 (Streptococcus phage Javan534, complete genome) position: , mismatch: 0, identity: 1.0

tccctgagggacaaacccgagaatgtccctgtgtccctgaggtgtctctagggacaa	CRISPR spacer
tccctgagggacaaacccgagaatgtccctgtgtccctgaggtgtctctagggacaa	Protospacer
*********************************************************

2. spacer 2.1|685448|57|NZ_CP009913|CRISPRCasFinder matches to MK448799 (Streptococcus phage Javan535, complete genome) position: , mismatch: 0, identity: 1.0

tccctgagggacaaacccgagaatgtccctgtgtccctgaggtgtctctagggacaa	CRISPR spacer
tccctgagggacaaacccgagaatgtccctgtgtccctgaggtgtctctagggacaa	Protospacer
*********************************************************

3. spacer 2.1|685448|57|NZ_CP009913|CRISPRCasFinder matches to MK448800 (Streptococcus phage Javan539, complete genome) position: , mismatch: 0, identity: 1.0

tccctgagggacaaacccgagaatgtccctgtgtccctgaggtgtctctagggacaa	CRISPR spacer
tccctgagggacaaacccgagaatgtccctgtgtccctgaggtgtctctagggacaa	Protospacer
*********************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

386731 : 392213

Streptococcus_phage(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002883723.1\|386731_387496_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.2e-15	24.8
WP_002883761.1\|387495_388206_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.0e-17	28.3
WP_038675333.1\|388340_389000_+	CBS domain-containing protein	M1NSC5	Streptococcus_phage	1.9e-66	58.7
WP_002883742.1\|389184_390111_-	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	9.4e-144	81.8
WP_038675335.1\|390212_390839_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	3.5e-70	62.3
WP_038675337.1\|390893_392213_+	DEAD/DEAH box helicase	A0A1X9I5S6	Streptococcus_phage	1.5e-123	52.8

DBSCAN-SWA_2

668896 : 744455

Streptococcus_phage(77.97%)

holin,portal,protease,tail,terminase,integrase,capsid

attL 671975:672018|attR 712907:712950

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004182927.1\|668896_670012_+	glycerate kinase	W6LM47	Streptococcus_phage	6.0e-137	86.3
WP_002885945.1\|670051_670507_-	YueI family protein	W6LLD2	Streptococcus_phage	2.9e-66	82.8
WP_002886048.1\|670713_672018_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	1.4e-246	99.5
671975:672018	attL	NA	NA	NA	NA
WP_038675597.1\|672075_673242_-\|integrase	site-specific integrase	W6LMU7	Streptococcus_phage	3.6e-209	95.3
WP_038675599.1\|673343_673736_-	ImmA/IrrE family metallo-endopeptidase	F8HGP6	Streptococcus_phage	8.2e-57	88.4
WP_038676965.1\|673751_673973_-	hypothetical protein	O48382	Streptococcus_phage	1.0e-32	95.9
WP_038675601.1\|674316_674745_-	hypothetical protein	A0A1S5SEV0	Streptococcus_phage	2.7e-21	35.5
WP_038675603.1\|674746_675130_-	helix-turn-helix domain-containing protein	O34035	Streptococcus_phage	7.5e-31	58.5
WP_038675605.1\|675300_675537_+	DUF739 family protein	A0A286QMT7	Streptococcus_phage	6.7e-22	73.9
WP_038675607.1\|675681_676005_-	hypothetical protein	NA	NA	NA	NA
WP_038676967.1\|676047_676287_+	hypothetical protein	W6LM55	Streptococcus_phage	1.2e-39	92.4
WP_164712005.1\|676456_676612_+	hypothetical protein	F8HGQ3	Streptococcus_phage	9.1e-20	90.2
WP_038675609.1\|676819_678541_+	hypothetical protein	A0A2H4IZY2	uncultured_Caudovirales_phage	1.4e-169	65.6
WP_038675611.1\|678545_679859_+	AAA family ATPase	Q5YA97	Bacillus_phage	1.2e-141	66.6
WP_038675614.1\|679858_680956_+	ATP-binding protein	A0A0K2CZH1	Paenibacillus_phage	2.5e-111	55.9
WP_038675616.1\|680970_681534_+	hypothetical protein	A0A097BY29	Enterococcus_phage	3.0e-36	50.7
WP_038675617.1\|681533_683117_+	DEAD/DEAH box helicase family protein	A0A097BY72	Enterococcus_phage	1.2e-236	78.4
WP_038675619.1\|683127_685377_+	AAA family ATPase	Q5YA88	Bacillus_phage	2.2e-279	62.5
WP_155274345.1\|685829_686030_+	hypothetical protein	NA	NA	NA	NA
WP_038676969.1\|686022_686418_+	RusA family crossover junction endodeoxyribonuclease	Q5YA86	Bacillus_phage	1.1e-40	60.3
WP_038675623.1\|686414_686642_+	hypothetical protein	NA	NA	NA	NA
WP_164712006.1\|686871_687042_+	hypothetical protein	A0A286QMT9	Streptococcus_phage	2.3e-16	76.8
WP_155274346.1\|687184_687340_+	hypothetical protein	A0A2H4J2W3	uncultured_Caudovirales_phage	2.9e-10	82.9
WP_080730927.1\|687302_687581_+	DUF1642 domain-containing protein	L0P2R5	Streptococcus_phage	1.4e-18	61.4
WP_038675626.1\|687645_687963_+	DUF1372 family protein	A0A286QMU5	Streptococcus_phage	1.5e-37	84.9
WP_038675628.1\|687959_688364_+	hypothetical protein	A0A286QNB5	Streptococcus_phage	3.7e-20	39.3
WP_038675630.1\|688356_689061_+	DUF1340 domain-containing protein	F8HGR9	Streptococcus_phage	1.5e-93	72.7
WP_038675632.1\|689399_689822_+	hypothetical protein	NA	NA	NA	NA
WP_038675633.1\|689904_690387_+\|terminase	terminase small subunit	A0A286QNY9	Streptococcus_phage	2.2e-64	84.5
WP_038675635.1\|690373_691678_+\|terminase	PBSX family phage terminase large subunit	A0A286QNX6	Streptococcus_phage	3.7e-223	87.8
WP_038676973.1\|691740_693198_+\|portal	phage portal protein	C5IUJ2	Streptococcus_phage	3.2e-255	91.8
WP_052124398.1\|693204_694395_+\|capsid	phage minor capsid protein	A0A286QMS2	Streptococcus_phage	2.1e-124	55.4
WP_038675637.1\|694592_695210_+	phage scaffolding protein	A0A286QP26	Streptococcus_phage	1.3e-77	80.5
WP_038675638.1\|695218_696064_+\|capsid	N4-gp56 family major capsid protein	A0A286QMT1	Streptococcus_phage	1.5e-140	91.5
WP_038675639.1\|696063_696249_+	Rho termination factor N-terminal domain-containing protein	A0A286QMS5	Streptococcus_phage	1.5e-16	73.8
WP_038675640.1\|696267_696657_+	hypothetical protein	C5IUJ7	Streptococcus_phage	2.4e-56	83.7
WP_038675641.1\|696646_696982_+	hypothetical protein	A0A286QMS6	Streptococcus_phage	6.3e-34	61.3
WP_038675642.1\|696981_697377_+	hypothetical protein	A0A1S5SA80	Streptococcus_phage	1.5e-29	55.6
WP_052124399.1\|697376_697781_+\|capsid	minor capsid protein	A0A286QML6	Streptococcus_phage	1.5e-53	77.6
WP_174411749.1\|697781_698360_+	hypothetical protein	A0A286QNY7	Streptococcus_phage	1.8e-76	85.4
WP_038675644.1\|698450_698813_+	hypothetical protein	A0A286QNZ4	Streptococcus_phage	2.3e-37	67.8
WP_038675645.1\|698815_699430_+	bacteriophage Gp15 family protein	A0A286QMS7	Streptococcus_phage	1.6e-86	72.7
WP_038675646.1\|699446_704054_+\|tail	tail protein	C5IUK3	Streptococcus_phage	2.1e-228	88.2
WP_038675647.1\|704050_704779_+	hypothetical protein	A0A286QMT6	Streptococcus_phage	1.0e-108	76.9
WP_080730928.1\|704775_706641_+\|tail	phage tail protein	C5IUK5	Streptococcus_phage	1.2e-166	57.8
WP_081094129.1\|706640_708812_+	SGNH/GDSL hydrolase family protein	A0A1S5SA51	Streptococcus_phage	5.8e-277	65.6
WP_038675648.1\|708823_709258_+\|holin	phage holin family protein	F8HGP0	Streptococcus_phage	1.4e-57	81.6
WP_038676984.1\|709250_709481_+\|holin	phage holin	A0A2I6QR05	Streptococcus_phage	1.4e-29	89.5
WP_038675649.1\|709483_709936_+	hypothetical protein	A0A2I6QR28	Streptococcus_phage	1.1e-70	89.3
WP_038675650.1\|709948_710275_+	hypothetical protein	A0A2H4J011	uncultured_Caudovirales_phage	2.2e-39	78.7
WP_038675651.1\|710287_710560_+	hypothetical protein	A0A2H4J827	uncultured_Caudovirales_phage	3.0e-26	83.1
WP_072903608.1\|710578_711964_+	CHAP domain-containing protein	A0A286QS50	Streptococcus_phage	3.0e-247	90.0
WP_002886071.1\|713102_713288_-	hypothetical protein	W6LMT3	Streptococcus_phage	1.9e-24	93.4
712907:712950	attR	NA	NA	NA	NA
WP_004182926.1\|713462_715649_-	LTA synthase family protein	W6LM83	Streptococcus_phage	0.0e+00	95.3
WP_004182922.1\|715810_716974_+	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	1.7e-211	94.6
WP_038675653.1\|716970_717648_+	type I 3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	3.3e-114	92.9
WP_038675654.1\|717637_718495_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_038675655.1\|718507_719575_+	3-dehydroquinate synthase	NA	NA	NA	NA
WP_038675656.1\|719575_720742_+	chorismate synthase	A0A291AU41	Pandoravirus	9.3e-40	34.9
WP_038675657.1\|720771_721878_+	prephenate dehydrogenase	NA	NA	NA	NA
WP_002890462.1\|721887_722226_+	YlbF/YmcA family competence regulator	A0A1X9I5Y8	Streptococcus_phage	2.1e-21	47.7
WP_038675658.1\|722314_723265_+	L-lactate dehydrogenase	NA	NA	NA	NA
WP_038675659.1\|723345_724629_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_037597597.1\|724621_725113_+	shikimate kinase	NA	NA	NA	NA
WP_002890467.1\|725103_725928_+	prephenate dehydratase	NA	NA	NA	NA
WP_038675660.1\|725939_727361_+	LCP family protein	NA	NA	NA	NA
WP_038675661.1\|727375_728314_-	ethanolamine utilization protein EutJ	NA	NA	NA	NA
WP_038675662.1\|728330_729395_-	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA
WP_002885920.1\|729434_729983_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_038675663.1\|730196_731555_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	F5CA72	Streptococcus_phi-m46.1-like_phage	2.8e-205	79.6
WP_038675664.1\|732029_732350_+	TfoX/Sxy family protein	NA	NA	NA	NA
WP_038675665.1\|732378_732768_+	VOC family protein	NA	NA	NA	NA
WP_038675666.1\|732904_733747_+	AraC family transcriptional regulator	D0R0F8	Streptococcus_phage	5.5e-127	80.6
WP_002886129.1\|734231_734765_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_038675667.1\|735016_735586_+	hypothetical protein	NA	NA	NA	NA
WP_038675668.1\|735826_736615_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_038675669.1\|736619_737507_-	helix-turn-helix transcriptional regulator	A0A0A7AQV8	Bacillus_phage	1.1e-05	30.4
WP_038675670.1\|737802_738579_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_038675671.1\|738642_739815_-	MFS transporter	NA	NA	NA	NA
WP_038675672.1\|740044_740887_-	DegV family protein	A0A1X9I5J4	Streptococcus_phage	1.7e-107	69.9
WP_021144459.1\|741012_741582_+	TetR/AcrR family transcriptional regulator	A0A1X9I6A2	Streptococcus_phage	2.7e-16	47.8
WP_038675673.1\|741618_742254_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_038675674.1\|742377_742650_+	hypothetical protein	NA	NA	NA	NA
WP_038675675.1\|742816_743656_+	DUF4300 family protein	NA	NA	NA	NA
WP_038675676.1\|743705_744455_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_3

1216596 : 1227261

Streptococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002883901.1\|1216596_1218159_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	2.4e-19	30.3
WP_038676144.1\|1218446_1219031_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_037611373.1\|1219315_1220335_-	alcohol dehydrogenase AdhP	A0A2K9L339	Tupanvirus	1.0e-26	25.5
WP_037611375.1\|1220495_1220777_-	hypothetical protein	M1PG86	Streptococcus_phage	1.6e-22	58.4
WP_037604998.1\|1220754_1221132_-	hypothetical protein	A0A1B0RXA8	Streptococcus_phage	2.0e-20	45.8
WP_038676147.1\|1221128_1222544_-	Y-family DNA polymerase	M1Q231	Streptococcus_phage	1.0e-194	70.7
WP_004182025.1\|1222657_1223509_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004182073.1\|1223521_1224151_-	amino acid ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-32	40.7
WP_002891087.1\|1224159_1224801_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_004182104.1\|1225002_1225335_-	alkylphosphonate utilization protein	NA	NA	NA	NA
WP_002891089.1\|1225452_1227261_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	2.5e-100	39.4

DBSCAN-SWA_4

1993650 : 2040658

Lactococcus_phage(25.0%)

transposase,bacteriocin,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038676806.1\|1993650_1994115_-\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	7.5e-17	32.6
WP_022495824.1\|1994318_1994732_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_022495825.1\|1994749_1995085_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_038676808.1\|2000609_2001752_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	9.3e-85	42.8
WP_038676806.1\|2002056_2002521_-\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	7.5e-17	32.6
WP_002885866.1\|2002730_2002865_-	50S ribosomal protein L34	NA	NA	NA	NA
WP_038676809.1\|2003060_2003624_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_038676811.1\|2003620_2004217_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_038676814.1\|2004346_2005390_-	protein jag	NA	NA	NA	NA
WP_037605452.1\|2005401_2006208_-	membrane protein insertase YidC	NA	NA	NA	NA
WP_002891957.1\|2006323_2006659_-	ribonuclease P protein component	NA	NA	NA	NA
WP_038676816.1\|2006735_2008130_-	argininosuccinate lyase	NA	NA	NA	NA
WP_002885646.1\|2008456_2009656_-	argininosuccinate synthase	NA	NA	NA	NA
WP_002885796.1\|2010603_2011347_-	response regulator transcription factor	NA	NA	NA	NA
WP_038676818.1\|2011348_2012665_-	GHKL domain-containing protein	NA	NA	NA	NA
WP_038676820.1\|2012688_2013969_-	hypothetical protein	NA	NA	NA	NA
WP_038676823.1\|2013990_2014881_-	hypothetical protein	NA	NA	NA	NA
WP_038676824.1\|2014940_2016248_-	GHKL domain-containing protein	NA	NA	NA	NA
WP_037611119.1\|2016700_2018155_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_037611118.1\|2018390_2020361_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002885800.1\|2020541_2021231_-	50S ribosomal protein L1	NA	NA	NA	NA
WP_002885648.1\|2021330_2021756_-	50S ribosomal protein L11	NA	NA	NA	NA
WP_038676827.1\|2021927_2022281_+	DUF3397 domain-containing protein	NA	NA	NA	NA
WP_038676829.1\|2022376_2022874_-	carbonic anhydrase	NA	NA	NA	NA
WP_002885783.1\|2023024_2023720_-	TIGR00266 family protein	NA	NA	NA	NA
WP_072903619.1\|2023805_2025167_-	DNA repair protein RadA	NA	NA	NA	NA
WP_038676832.1\|2025163_2025631_-	cysteine hydrolase	NA	NA	NA	NA
WP_038676834.1\|2025641_2026088_-	dUTP diphosphatase	Q332E8	Clostridium_botulinum_C_phage	8.5e-34	50.7
WP_038676836.1\|2026295_2026898_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	2.0e-54	53.7
WP_002885631.1\|2026916_2028167_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL82	Lactobacillus_phage	7.6e-56	52.7
WP_038676838.1\|2029086_2029647_+	MptD family putative ECF transporter S component	NA	NA	NA	NA
WP_022496721.1\|2029765_2030788_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_003091906.1\|2030805_2031720_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	3.7e-76	51.5
WP_038676843.1\|2031765_2032440_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_038676845.1\|2032430_2032958_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_038676847.1\|2033026_2034160_-	N-acetyldiaminopimelate deacetylase	NA	NA	NA	NA
WP_002886999.1\|2034236_2034935_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA	NA	NA	NA
WP_038676849.1\|2035020_2035773_-	HAD family hydrolase	NA	NA	NA	NA
WP_038676851.1\|2035886_2036726_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_038676853.1\|2037147_2037306_+\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_002885883.1\|2037325_2037493_+\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_038676855.1\|2037540_2037795_+	hypothetical protein	NA	NA	NA	NA
WP_155274350.1\|2037904_2038399_-\|tRNA	tRNA-specific adenosine deaminase	NA	NA	NA	NA
WP_002885697.1\|2039159_2039552_-	single-stranded DNA-binding protein	A1EAD1	Streptococcus_phage	2.6e-26	47.7
WP_002887005.1\|2039980_2040658_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_5

2166514 : 2177945

Staphylococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048676465.1\|2166514_2167210_-	lytic transglycosylase domain-containing protein	Q4Z8Z7	Staphylococcus_phage	5.9e-26	72.4
WP_002885621.1\|2167393_2167975_-	LysM peptidoglycan-binding domain-containing protein	A0A249XZV3	Enterococcus_phage	1.0e-23	55.2
WP_022496149.1\|2168275_2169070_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_038676922.1\|2169062_2169905_-	energy-coupling factor transporter ATPase	A0A2H4PQG7	Staphylococcus_phage	6.3e-14	27.9
WP_038676925.1\|2169880_2170711_-	energy-coupling factor transporter ATPase	F2Y302	Organic_Lake_phycodnavirus	7.4e-15	27.8
WP_002885640.1\|2170723_2171266_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_022496147.1\|2171278_2172136_-	DUF4115 domain-containing protein	NA	NA	NA	NA
WP_022496146.1\|2172194_2173472_-	insulinase family protein	A0A2H4UVM3	Bodo_saltans_virus	1.5e-06	28.1
WP_038676927.1\|2173473_2174724_-	insulinase family protein	A0A1X9I714	Streptococcus_phage	6.6e-92	40.3
WP_038676929.1\|2174801_2175179_+	S4 domain-containing protein YaaA	A0A1X9I5V8	Streptococcus_phage	3.9e-24	72.4
WP_038676931.1\|2175181_2176282_+	DNA replication/repair protein RecF	NA	NA	NA	NA
WP_013991341.1\|2176463_2177945_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.6e-95	40.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009913

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection