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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP007595 Arthrobacter sp. PAMC 25486 chromosome, complete genome 5 crisprs c2c9_V-U4,RT,csa3,WYL,DEDDh,PD-DExK,PrimPol,cas3,DinG 0 5 3 0

Results visualization

1. NZ_CP007595
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007595_1 210534-210699 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007595_2 650015-650096 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007595_3 2594204-2594290 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007595_4 3648749-3648958 Orphan NA
4 spacers
RT

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007595_5 4398134-4398215 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP007595_4 4.4|3648913|28|NZ_CP007595|CRT 3648913-3648940 28 NZ_CP013746 Arthrobacter alpinus strain A3 plasmid unnamed, complete sequence 153404-153431 2 0.929
NZ_CP007595_4 4.3|3648867|28|NZ_CP007595|CRT 3648867-3648894 28 NZ_CP013746 Arthrobacter alpinus strain A3 plasmid unnamed, complete sequence 153358-153385 3 0.893
NZ_CP007595_4 4.4|3648913|28|NZ_CP007595|CRT 3648913-3648940 28 NZ_CP013746 Arthrobacter alpinus strain A3 plasmid unnamed, complete sequence 153541-153568 3 0.893
NZ_CP007595_4 4.4|3648913|28|NZ_CP007595|CRT 3648913-3648940 28 NZ_CP013746 Arthrobacter alpinus strain A3 plasmid unnamed, complete sequence 153259-153286 4 0.857
NZ_CP007595_1 1.2|210637|32|NZ_CP007595|CRISPRCasFinder 210637-210668 32 NZ_LR134465 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence 381551-381582 6 0.812
NZ_CP007595_1 1.2|210637|32|NZ_CP007595|CRISPRCasFinder 210637-210668 32 NZ_CP021084 Deinococcus ficus strain CC-FR2-10 plasmid pDFI3, complete sequence 166313-166344 7 0.781
NZ_CP007595_3 3.1|2594234|27|NZ_CP007595|CRISPRCasFinder 2594234-2594260 27 MT498057 Microbacterium phage Cicada, complete genome 23036-23062 7 0.741
NZ_CP007595_3 3.1|2594234|27|NZ_CP007595|CRISPRCasFinder 2594234-2594260 27 MT711977 Streptomyces phage Dagobah, complete genome 19221-19247 7 0.741
NZ_CP007595_3 3.1|2594234|27|NZ_CP007595|CRISPRCasFinder 2594234-2594260 27 MK016497 Microbacterium phage Johann, complete genome 22949-22975 7 0.741
NZ_CP007595_3 3.1|2594234|27|NZ_CP007595|CRISPRCasFinder 2594234-2594260 27 MN369765 Microbacterium phage Zanella, complete genome 22835-22861 7 0.741
NZ_CP007595_3 3.1|2594234|27|NZ_CP007595|CRISPRCasFinder 2594234-2594260 27 MK016495 Microbacterium phage Goodman, complete genome 22949-22975 7 0.741
NZ_CP007595_1 1.2|210637|32|NZ_CP007595|CRISPRCasFinder 210637-210668 32 KX855962 Arthrobacter phage HumptyDumpty, complete genome 8812-8843 8 0.75
NZ_CP007595_1 1.2|210637|32|NZ_CP007595|CRISPRCasFinder 210637-210668 32 MF185721 Arthrobacter phage Kabreeze, complete genome 8812-8843 8 0.75
NZ_CP007595_1 1.2|210637|32|NZ_CP007595|CRISPRCasFinder 210637-210668 32 KX522650 Arthrobacter Phage Conboy, complete genome 8813-8844 8 0.75
NZ_CP007595_1 1.2|210637|32|NZ_CP007595|CRISPRCasFinder 210637-210668 32 MK494107 Arthrobacter phage Chipper1996, complete genome 8814-8845 8 0.75
NZ_CP007595_1 1.2|210637|32|NZ_CP007595|CRISPRCasFinder 210637-210668 32 MF185724 Arthrobacter phage Scavito, complete genome 8812-8843 8 0.75
NZ_CP007595_1 1.2|210637|32|NZ_CP007595|CRISPRCasFinder 210637-210668 32 MN204499 Arthrobacter phage Mordred, complete genome 8812-8843 8 0.75
NZ_CP007595_1 1.2|210637|32|NZ_CP007595|CRISPRCasFinder 210637-210668 32 MF185725 Arthrobacter phage Tophat, complete genome 8814-8845 8 0.75
NZ_CP007595_1 1.2|210637|32|NZ_CP007595|CRISPRCasFinder 210637-210668 32 KX855961 Arthrobacter phage EdgarPoe, complete genome 8813-8844 8 0.75
NZ_CP007595_1 1.2|210637|32|NZ_CP007595|CRISPRCasFinder 210637-210668 32 NZ_CP013855 Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence 73997-74028 8 0.75
NZ_CP007595_1 1.2|210637|32|NZ_CP007595|CRISPRCasFinder 210637-210668 32 LN997843 Streptomyces reticuli genome assembly TUE45, plasmid : II 503285-503316 8 0.75
NZ_CP007595_5 5.1|4398159|32|NZ_CP007595|CRISPRCasFinder 4398159-4398190 32 NC_023570 Acinetobacter phage Petty, complete genome 1710-1741 8 0.75
NZ_CP007595_1 1.2|210637|32|NZ_CP007595|CRISPRCasFinder 210637-210668 32 HG796783 Uncultured bacterium plasmid pRGF00023 279-310 10 0.688
NZ_CP007595_1 1.2|210637|32|NZ_CP007595|CRISPRCasFinder 210637-210668 32 NZ_CP015609 Bacillus safensis strain U14-5 plasmid unnamed2, complete sequence 10920-10951 11 0.656

1. spacer 4.4|3648913|28|NZ_CP007595|CRT matches to NZ_CP013746 (Arthrobacter alpinus strain A3 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.929

gtgtccgcctcctactgcttgacggtcc	CRISPR spacer
gtgtccgtctcctattgcttgacggtcc	Protospacer
*******.******.*************

2. spacer 4.3|3648867|28|NZ_CP007595|CRT matches to NZ_CP013746 (Arthrobacter alpinus strain A3 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.893

ttggtcgtctcaagatgtccgacgaccg	CRISPR spacer
gtggtcgtctcaagctgtccgacgacca	Protospacer
 ************* ************.

3. spacer 4.4|3648913|28|NZ_CP007595|CRT matches to NZ_CP013746 (Arthrobacter alpinus strain A3 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.893

gtgtccgcctcctactgcttgacggtcc	CRISPR spacer
gtgtccgtctcctactgcttgacggcca	Protospacer
*******.*****************.* 

4. spacer 4.4|3648913|28|NZ_CP007595|CRT matches to NZ_CP013746 (Arthrobacter alpinus strain A3 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.857

gtgtccgcctcctactgcttgacggtcc	CRISPR spacer
gtatccgtctcctactgcttgacggcca	Protospacer
**.****.*****************.* 

5. spacer 1.2|210637|32|NZ_CP007595|CRISPRCasFinder matches to NZ_LR134465 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence) position: , mismatch: 6, identity: 0.812

ctggtgcgggagcggccgggggtgcagcgggt	CRISPR spacer
gagggccgggagcgcccaggggtgcagcgggt	Protospacer
  **  ******** **.**************

6. spacer 1.2|210637|32|NZ_CP007595|CRISPRCasFinder matches to NZ_CP021084 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI3, complete sequence) position: , mismatch: 7, identity: 0.781

ctggtgcgggagcggccgggggtgcagcgggt	CRISPR spacer
cctgtgctggagcggcctggggtgcacccgct	Protospacer
*. **** ********* ******** * * *

7. spacer 3.1|2594234|27|NZ_CP007595|CRISPRCasFinder matches to MT498057 (Microbacterium phage Cicada, complete genome) position: , mismatch: 7, identity: 0.741

ggagggggacacgcggaaggcccccca	CRISPR spacer
gtcaaaggacacgcggaaggcccccag	Protospacer
*  ...******************* .

8. spacer 3.1|2594234|27|NZ_CP007595|CRISPRCasFinder matches to MT711977 (Streptomyces phage Dagobah, complete genome) position: , mismatch: 7, identity: 0.741

ggagggggacacgcggaaggcccccca	CRISPR spacer
atgcccggacacggggaaggcccccca	Protospacer
. .   ******* *************

9. spacer 3.1|2594234|27|NZ_CP007595|CRISPRCasFinder matches to MK016497 (Microbacterium phage Johann, complete genome) position: , mismatch: 7, identity: 0.741

ggagggggacacgcggaaggcccccca	CRISPR spacer
gtcaaaggacacgcggaaggcccccag	Protospacer
*  ...******************* .

10. spacer 3.1|2594234|27|NZ_CP007595|CRISPRCasFinder matches to MN369765 (Microbacterium phage Zanella, complete genome) position: , mismatch: 7, identity: 0.741

ggagggggacacgcggaaggcccccca	CRISPR spacer
gtcaaaggacacgcggaaggcccccag	Protospacer
*  ...******************* .

11. spacer 3.1|2594234|27|NZ_CP007595|CRISPRCasFinder matches to MK016495 (Microbacterium phage Goodman, complete genome) position: , mismatch: 7, identity: 0.741

ggagggggacacgcggaaggcccccca	CRISPR spacer
gtcaaaggacacgcggaaggcccccag	Protospacer
*  ...******************* .

12. spacer 1.2|210637|32|NZ_CP007595|CRISPRCasFinder matches to KX855962 (Arthrobacter phage HumptyDumpty, complete genome) position: , mismatch: 8, identity: 0.75

ctggtgcgggagcggccgggggtgcagcgggt	CRISPR spacer
cagcggcgggagcggcagcgggtgcagcgccc	Protospacer
* *  *********** * **********  .

13. spacer 1.2|210637|32|NZ_CP007595|CRISPRCasFinder matches to MF185721 (Arthrobacter phage Kabreeze, complete genome) position: , mismatch: 8, identity: 0.75

ctggtgcgggagcggccgggggtgcagcgggt	CRISPR spacer
cagcggcgggagcggcagcgggtgcagcgccc	Protospacer
* *  *********** * **********  .

14. spacer 1.2|210637|32|NZ_CP007595|CRISPRCasFinder matches to KX522650 (Arthrobacter Phage Conboy, complete genome) position: , mismatch: 8, identity: 0.75

ctggtgcgggagcggccgggggtgcagcgggt	CRISPR spacer
cagcggcgggagcggcagcgggtgcagcgccc	Protospacer
* *  *********** * **********  .

15. spacer 1.2|210637|32|NZ_CP007595|CRISPRCasFinder matches to MK494107 (Arthrobacter phage Chipper1996, complete genome) position: , mismatch: 8, identity: 0.75

ctggtgcgggagcggccgggggtgcagcgggt	CRISPR spacer
cagcggcgggagcggcagcgggtgcagcgccc	Protospacer
* *  *********** * **********  .

16. spacer 1.2|210637|32|NZ_CP007595|CRISPRCasFinder matches to MF185724 (Arthrobacter phage Scavito, complete genome) position: , mismatch: 8, identity: 0.75

ctggtgcgggagcggccgggggtgcagcgggt	CRISPR spacer
cagcggcgggagcggcagcgggtgcagcgccc	Protospacer
* *  *********** * **********  .

17. spacer 1.2|210637|32|NZ_CP007595|CRISPRCasFinder matches to MN204499 (Arthrobacter phage Mordred, complete genome) position: , mismatch: 8, identity: 0.75

ctggtgcgggagcggccgggggtgcagcgggt	CRISPR spacer
cagcggcgggagcggcagcgggtgcagcgccc	Protospacer
* *  *********** * **********  .

18. spacer 1.2|210637|32|NZ_CP007595|CRISPRCasFinder matches to MF185725 (Arthrobacter phage Tophat, complete genome) position: , mismatch: 8, identity: 0.75

ctggtgcgggagcggccgggggtgcagcgggt	CRISPR spacer
cagcggcgggagcggcagcgggtgcagcgccc	Protospacer
* *  *********** * **********  .

19. spacer 1.2|210637|32|NZ_CP007595|CRISPRCasFinder matches to KX855961 (Arthrobacter phage EdgarPoe, complete genome) position: , mismatch: 8, identity: 0.75

ctggtgcgggagcggccgggggtgcagcgggt	CRISPR spacer
cagcggcgggagcggcagcgggtgcagcgccc	Protospacer
* *  *********** * **********  .

20. spacer 1.2|210637|32|NZ_CP007595|CRISPRCasFinder matches to NZ_CP013855 (Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence) position: , mismatch: 8, identity: 0.75

ctggtgcgggagcggccgggggtgcagcgggt	CRISPR spacer
ccggtgccggagcggccggaggtgcggatgcc	Protospacer
*.***** ***********.*****.*  * .

21. spacer 1.2|210637|32|NZ_CP007595|CRISPRCasFinder matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 8, identity: 0.75

ctggtgcgggagcggccgggggtgcagcgggt	CRISPR spacer
cgggtgcgggagcggcccggagtgcccggtgc	Protospacer
* *************** **.****   * *.

22. spacer 5.1|4398159|32|NZ_CP007595|CRISPRCasFinder matches to NC_023570 (Acinetobacter phage Petty, complete genome) position: , mismatch: 8, identity: 0.75

acagcttgacaattttcgcagcttcaaaagtg	CRISPR spacer
attgcgctaccattttcgcagcgtcaaaagta	Protospacer
*. ** . ** *********** ********.

23. spacer 1.2|210637|32|NZ_CP007595|CRISPRCasFinder matches to HG796783 (Uncultured bacterium plasmid pRGF00023) position: , mismatch: 10, identity: 0.688

ctggtgcgggagcggccgggggtgcagcgggt	CRISPR spacer
agctttttggagcggcggggggtgcagggggg	Protospacer
    * . ******** ********** *** 

24. spacer 1.2|210637|32|NZ_CP007595|CRISPRCasFinder matches to NZ_CP015609 (Bacillus safensis strain U14-5 plasmid unnamed2, complete sequence) position: , mismatch: 11, identity: 0.656

ctggtgcgggagcggccgggggtgcagcgggt	CRISPR spacer
taacccggggagcggccgggggcgcggcggca	Protospacer
. . .  ***************.**.****  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 594654 : 646903 48 Mycobacterium_phage(33.33%) protease,tRNA,integrase,transposase attL 586690:586704|attR 619963:619977
DBSCAN-SWA_2 1634230 : 1643280 19 Gordonia_phage(40.0%) NA NA
DBSCAN-SWA_3 1646320 : 1653847 10 Arthrobacter_phage(85.71%) portal,capsid NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage