CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP003408	Thermotoga sp. 2812B, complete genome	8 crisprs	DEDDh,cas14k,WYL,cas3,cas3HD,cas6,csx1,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx22,cas8b1,cas7,cas5,cas4,cas1,cas2,cmr1gr7,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csa3	0	3	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP003408_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003408_1

557128-558291

Orphan

III-A

Consensus_repeat	Method
GTTTCAATAATTCCTTAGAGGTATGGAAAC	PILER-CR
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CRISPRCasFinder
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CRT

17 spacers

The CRISPR arrays of NZ_CP003408_1

>merge|NZ_CP003408|1|557128-558291|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATAATTCCTTAGAGGTATGGAAACTGAGGTTGATCCCTGCGTGGATGTAAGGAACTTCTCGTTTCAATAATTCCTTAGAGGTATGGAAACGCAACCTTCTTGAAGTTCATTTTTCCACCTCCGTCGCGTTTCAATAATTCCTTAGAGGTATGGAAACGCGTAGTTGAATTGCACATCGTTTGAACCGGCTGGAAGTTTCAATAATTCCTTAGAGGTATGGAAACTCTTACAGGGCACTACAAAGCTCGGACAATTCTACGTTTCAATAATTCCTTAGAGGTATGGAAACCGTGGTTGACCTGTGCTAAATTCTCGTCCCAGTATCGGGTTTCAATAATTCCTTAGAGGTATGGAAACTACAAATCAGGAGCCGAGAAGTTGACGCGGCTCTTGTTTCCAGTTTCAATAATTCCTTAGAGGTATGGAAACACAGATCTTTCCAAGGAGCAAGCTTCCAGGCTTAGTTTCAATAATTCCTTAGAGGTATGGAAACAGGGGCTGTGGCATGATGTGTGGATCGAAGACGGGGTTTCAATAATTCCTTAGAGGTATGGAAACGGATATAGCAGAAAAATTACCTGAAGGATGGGTAAAGTTTCAATAATTCCTTAGAGGTATGGAAACTTTGTACACGAGGCAACCGAGTTTCGTGCCACATTGTCGTTTCAATAATTCCTTAGAGGTATGGAAACCCGTTAGAAGCTTTTACCACTTCTTGGTCTCTAACTGTTTCAATAATTCCTTAGAGGTATGGAAACATCCGTGGAATTTCGATACAGTTTGGAGATTTGGAAGGTTTCAATAATTCCTTAGAGGTATGGAAACTACCCCTCAACGATATCTACATCTTCAAGAAATTCTCGTTTCAATAATTCCTTAGAGGTATGGAAACACACCCTGACTTGCCTTCTGTACCACATCATCTCTAGTTTCAATAATTCCTTAGAGGTATGGAAACCCAGCCAATCGCCGGCCATCGCTGGATGGGTCGCATGGTTTCAATAATTCCTTAGAGGTATGGAAACTAGCATATATCCTACCAAAATCTGTGAATACAACCAAGTTTCAATAATTCCTTAGAGGTATGGAAACTCGTACTTTCGAAGCATCGAGGGAATTACATCGCCCGTTTCAATACTTCCTTAAAGGTATGGAAAC

>NZ_CP003408|1|1|557128-558225|PILER-CR
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TGAGGTTGATCCCTGCGTGGATGTAAGGAACTTCTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GCAACCTTCTTGAAGTTCATTTTTCCACCTCCGTCGC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GCGTAGTTGAATTGCACATCGTTTGAACCGGCTGGAA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TCTTACAGGGCACTACAAAGCTCGGACAATTCTAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CGTGGTTGACCTGTGCTAAATTCTCGTCCCAGTATCGG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TACAAATCAGGAGCCGAGAAGTTGACGCGGCTCTTGTTTCCA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ACAGATCTTTCCAAGGAGCAAGCTTCCAGGCTTA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGGGGCTGTGGCATGATGTGTGGATCGAAGACGGG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GGATATAGCAGAAAAATTACCTGAAGGATGGGTAAA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTTGTACACGAGGCAACCGAGTTTCGTGCCACATTGTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCGTTAGAAGCTTTTACCACTTCTTGGTCTCTAACT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATCCGTGGAATTTCGATACAGTTTGGAGATTTGGAAG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TACCCCTCAACGATATCTACATCTTCAAGAAATTCTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ACACCCTGACTTGCCTTCTGTACCACATCATCTCTA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCAGCCAATCGCCGGCCATCGCTGGATGGGTCGCATG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAGCATATATCCTACCAAAATCTGTGAATACAACCAA
GTTTCAATAATTCCTTAGAGGTATGGAAAC

>NZ_CP003408|1|1|557128-558291|CRISPRCasFinder
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TGAGGTTGATCCCTGCGTGGATGTAAGGAACTTCTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GCAACCTTCTTGAAGTTCATTTTTCCACCTCCGTCGC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GCGTAGTTGAATTGCACATCGTTTGAACCGGCTGGAA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TCTTACAGGGCACTACAAAGCTCGGACAATTCTAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CGTGGTTGACCTGTGCTAAATTCTCGTCCCAGTATCGG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TACAAATCAGGAGCCGAGAAGTTGACGCGGCTCTTGTTTCCA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ACAGATCTTTCCAAGGAGCAAGCTTCCAGGCTTA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGGGGCTGTGGCATGATGTGTGGATCGAAGACGGG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GGATATAGCAGAAAAATTACCTGAAGGATGGGTAAA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTTGTACACGAGGCAACCGAGTTTCGTGCCACATTGTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCGTTAGAAGCTTTTACCACTTCTTGGTCTCTAACT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATCCGTGGAATTTCGATACAGTTTGGAGATTTGGAAG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TACCCCTCAACGATATCTACATCTTCAAGAAATTCTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ACACCCTGACTTGCCTTCTGTACCACATCATCTCTA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCAGCCAATCGCCGGCCATCGCTGGATGGGTCGCATG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAGCATATATCCTACCAAAATCTGTGAATACAACCAA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TCGTACTTTCGAAGCATCGAGGGAATTACATCGCCC
GTTTCAATACTTCCTTAAAGGTATGGAAAC

>NZ_CP003408|1|1|557128-558291|CRT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TGAGGTTGATCCCTGCGTGGATGTAAGGAACTTCTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GCAACCTTCTTGAAGTTCATTTTTCCACCTCCGTCGC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GCGTAGTTGAATTGCACATCGTTTGAACCGGCTGGAA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TCTTACAGGGCACTACAAAGCTCGGACAATTCTAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CGTGGTTGACCTGTGCTAAATTCTCGTCCCAGTATCGG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TACAAATCAGGAGCCGAGAAGTTGACGCGGCTCTTGTTTCCA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ACAGATCTTTCCAAGGAGCAAGCTTCCAGGCTTA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGGGGCTGTGGCATGATGTGTGGATCGAAGACGGG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GGATATAGCAGAAAAATTACCTGAAGGATGGGTAAA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTTGTACACGAGGCAACCGAGTTTCGTGCCACATTGTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCGTTAGAAGCTTTTACCACTTCTTGGTCTCTAACT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATCCGTGGAATTTCGATACAGTTTGGAGATTTGGAAG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TACCCCTCAACGATATCTACATCTTCAAGAAATTCTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ACACCCTGACTTGCCTTCTGTACCACATCATCTCTA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCAGCCAATCGCCGGCCATCGCTGGATGGGTCGCATG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAGCATATATCCTACCAAAATCTGTGAATACAACCAA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TCGTACTTTCGAAGCATCGAGGGAATTACATCGCCC
GTTTCAATACTTCCTTAAAGGTATGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003408.1\|WP_008191952.1\|552097_553375_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224171
NZ_CP003408.1\|WP_008193488.1\|560827_561163_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NZ_CP003408.1\|WP_008191941.1\|555246_556467_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340823
NZ_CP003408.1\|WP_008191950.1\|553362_554100_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238481
NZ_CP003408.1\|WP_008191957.1\|550125_551649_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|223147
NZ_CP003408.1\|WP_008193497.1\|563851_564403_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl\|CDD\|274317
NZ_CP003408.1\|WP_008191964.1\|546185_546740_+\|thymidine-kinase	unknown	unknown	gnl\|CDD\|224352
NZ_CP003408.1\|WP_008193486.1\|559471_560803_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|181958
NZ_CP003408.1\|WP_008193501.1\|566404_567370_+\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380315
NZ_CP003408.1\|WP_008193499.1\|564368_566324_+\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|181342
NZ_CP003408.1\|WP_008193493.1\|563225_563726_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380325
NZ_CP003408.1\|WP_008191942.1\|554126_555242_-\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NZ_CP003408.1\|WP_008193491.1\|562534_563233_-\|endonuclease-III-domain-containing-protein	unknown	unknown	gnl\|CDD\|225140
NZ_CP003408.1\|WP_081501855.1\|551642_552101_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319885
NZ_CP003408.1\|WP_008193489.1\|561208_562558_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|273568
NZ_CP003408.1\|WP_081501923.1\|558394_559366_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223318
NZ_CP003408.1\|WP_081501856.1\|547921_548599_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP003408.1\|WP_008193503.1\|567366_568377_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NZ_CP003408.1\|WP_008191959.1\|548999_550133_+\|glutamine-amidotransferase-family-protein	unknown	unknown	gnl\|CDD\|238888
NZ_CP003408.1\|WP_008191963.1\|546723_547941_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715

Protein	Function_ID	Function_description	E-value
NZ_CP003408.1\|WP_008191952.1\|552097_553375_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224171	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion].	1.16628e-84
NZ_CP003408.1\|WP_008193488.1\|560827_561163_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	4.96647e-20
NZ_CP003408.1\|WP_008191941.1\|555246_556467_-\|glycosyltransferase	gnl\|CDD\|340823	cd03792, GT4_trehalose_phosphorylase, trehalose phosphorylase and similar proteins. Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT4 family of glycosyltransferases.	0
NZ_CP003408.1\|WP_008191950.1\|553362_554100_+\|hypothetical-protein	gnl\|CDD\|238481	cd00981, arch_gltB, Archaeal-type gltB domain. This domain shares sequence similarity with a region of unknown function found in the large subunit of glutamate synthase, which is encoded by gltB and found in most bacteria and eukaryotes. It is predicted to be homologous to the C-terminal domain of glutamate synthase based upon sequence similarity coupled with genome organization data, showing that this domain is found in a gene cluster with other domains of Glts, which are annotated. This domain is found primarily in archaea, but is also present in a few bacteria, likely as a result of lateral gene transfer.	4.04526e-126
NZ_CP003408.1\|WP_008191957.1\|550125_551649_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|223147	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism].	0
NZ_CP003408.1\|WP_008193497.1\|563851_564403_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl\|CDD\|274317	TIGR02826, hypothetical_protein, anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of radical SAM enzymes related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	1.19899e-66
NZ_CP003408.1\|WP_008191964.1\|546185_546740_+\|thymidine-kinase	gnl\|CDD\|224352	COG1435, Tdk, Thymidine kinase [Nucleotide transport and metabolism].	5.56895e-80
NZ_CP003408.1\|WP_008193486.1\|559471_560803_+\|FAD-binding-protein	gnl\|CDD\|181958	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.	6.32281e-78
NZ_CP003408.1\|WP_008193501.1\|566404_567370_+\|redoxin-domain-containing-protein	gnl\|CDD\|380315	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to Burkholderia pseudomallei TdsD, may be involved in the processing of organosulfur compounds. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	1.61824e-78
NZ_CP003408.1\|WP_008193499.1\|564368_566324_+\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|181342	PRK08271, PRK08271, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
NZ_CP003408.1\|WP_008193493.1\|563225_563726_+\|nitroreductase-family-protein	gnl\|CDD\|380325	cd02150, nitroreductase, nitroreductase family protein. A subfamily of the nitroreductase family containing uncharacterized proteins. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.often found to be homodimers.	1.47838e-96
NZ_CP003408.1\|WP_008191942.1\|554126_555242_-\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.77716e-41
NZ_CP003408.1\|WP_008193491.1\|562534_563233_-\|endonuclease-III-domain-containing-protein	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	5.77946e-93
NZ_CP003408.1\|WP_081501855.1\|551642_552101_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319885	cd10563, CooF_like, CooF, iron-sulfur subunit of carbon monoxide dehydrogenase. This family includes CooF, the iron-sulfur subunit of carbon monoxide dehydrogenase (CODH), found in anaerobic bacteria and archaea. Carbon monoxide dehydrogenase is a key enzyme for carbon monoxide (CO) metabolism, where CooF is the proposed mediator of electron transfer between CODH and the CO-induced hydrogenase, catalyzing the reaction that uses CO as a single carbon and energy source, and producing only H2 and CO2. The ion-sulfur subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons in the protein complex during reaction.	2.31989e-65
NZ_CP003408.1\|WP_008193489.1\|561208_562558_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|273568	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase. This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.	0
NZ_CP003408.1\|WP_081501923.1\|558394_559366_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|223318	COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	2.97221e-153
NZ_CP003408.1\|WP_081501856.1\|547921_548599_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	6.19828e-86
NZ_CP003408.1\|WP_008193503.1\|567366_568377_-\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	5.33325e-17
NZ_CP003408.1\|WP_008191959.1\|548999_550133_+\|glutamine-amidotransferase-family-protein	gnl\|CDD\|238888	cd01907, GlxB, Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.	1.60103e-110
NZ_CP003408.1\|WP_008191963.1\|546723_547941_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.05637e-52

>NZ_CP003408.1|WP_008191941.1|555246_556467_-|glycosyltransferase
MDVVLRERNIEEYRTIIGNEVDEIKKLAEPLKGKKVLHVNATAYGGGVAEILHNLVPLMRSVGLDARWRVIEAPDEFFNVTKKFHNTLQGADIEISEEEWNLYEEVCGKNAELIQDEELFVIHDPQPAALRKFVNLNDRKWIWRCHIDLSTPNMKVWQRFSQYLEGYDRLVFHLEEYFPQGWEERSIAFPPSIDPLSEKNRDLDEDTIRKTLERLEIDPERPLITVVARFDPWKDLFSAIDVYRLVKKEIPEVQLAVVSAMATDDPEGWFFFEKVLRYAGTDEDIKFCTNLKGVGNKEVNAIQRATTVALHTATREGFGLVISEALYKRVPVVARPVGGVKIQVKHGENGYLAWEREDLAGYVVKLIKDEELRRKMGEKGRQTVVENFIITVHLKNYLKLFLDLLR
>NZ_CP003408.1|WP_008191942.1|554126_555242_-|ROK-family-transcriptional-regulator
MPSPLLRRENKIKILRYILRNGKTTRNQLASNLNLAHSTLSYIIDELLDEGFLVFEEIRKRRGRPYQILKVNPEKFTAIGVKVGREEVRGVLFDASMNPLKEHRVQILSGMRNNDGYTRALRETIEQLHSENLLGVGICSSGIVKEGRVVVSHVMNVKDWDPRKVLKDLERILVMNDSDALCREISQRVNADFLLVSYGIGIGASLWKDKRIHHLEMGHMLASSEGKCYCGQTGCLEYHSSEYAVLKSCLGKEIDFEDFITSEEEKYRQTIEELREKARKDFDSVKVHYEKAFKTFSVVLGNVIMGSGVSRVFFAGEGVVNEEMIKILEEMVRARFNRDFVGEVQFQVANANWMLGAARAVVDKYLPYIVK
>NZ_CP003408.1|WP_008191950.1|553362_554100_+|hypothetical-protein
MVRIDAKGLHYKKLNDLIWEAIENGEEEIVLDNVCGQRYIGAGIRKKVKIEINGVPGNDLGVFMDGPEIIVNGNAQDGVGNTMNAGKIVVHGHAGDIIGYAMRGGHIYIKRNAGYRVGIHMKAYKENYPVVVIGGFARDFLGEYMAGGLLIVLGLEKDEDGNIAGNYVGTGMHGGEIFLRGTVEEHKLGKEVKIFQPTEEDINRIKPYVEEFCRLFDYDSEEILNGEFIILKPYTHRPYGRLYAY
>NZ_CP003408.1|WP_008191952.1|552097_553375_+|NAD(P)/FAD-dependent-oxidoreductase
MRYVIVGSGPAGLNAIEAIREVDKEGEILLITAEKYVGYSRPLITYLLGRKVTEEKMYYRTEDYLREMRVDIKPATRVEKVIPEEKTVVTDSGEEIRYDKLLIATGGKPFVPNIEGLTGKKGVFTFTTWEDEEKVEKYIEENDVKEAVVLGGGLIGLKTTEALMELGVKVTIVELADRILSVTFDRKASEIITEALKKEGCSVITNDTVVKVNGDDTVSSVVLKSGKEIPTKLLVIAIGVRPNVEFLKDSGIEINRGIVVNEKMETNVEGVYAAGDCTEFYDLIDGQRKTIAIWPVAVAQGRVAGYNMAGRNVRYPGGIPMNSVELAGIPTISVGHSNVEDDGYEILTFEEGNTYKKMVLKDNRLIGAILVNDIDRAGIYTGLILQKLDVSSFKDRLLDENFGLVYLPKEFRKKMLEGEIKIWLE
>NZ_CP003408.1|WP_081501855.1|551642_552101_+|4Fe-4S-dicluster-domain-containing-protein
MVIAVRRILIREEYCIGCKLCEINCVAAQVGTGNLIKVYRYVPELPEPNVIVEEHDYVTFALQCRNCDDPSCLKACMTGAMHRDPKTGAIRVNQEKCVGCWMCVMACPFGVIRRNTKEKKVASKCDLCADRGTPGCVEGCPNEALVLVEVRE
>NZ_CP003408.1|WP_008191957.1|550125_551649_+|4Fe-4S-dicluster-domain-containing-protein
MAKRKVPPEFVVERDDYKCIRCLACVRVCSYGANFYDENANRVYTENTKCVGCHFCEAICPTEAITVRKNDFDIRPLAHWTPEHLIGIMKQAETGGVLLTSMGNDRPYFSYFDRIVLNASQVTNPSIDPLREPMEIRTYVGRKEEKLEIEEDEDGTVKLKTEIAPQLKLEVPVMFTAMSYGSISLNAILSLARAARTVGTFFNTGEGGLPKELREFKDNMIVQVASGRFGVSADYLNAGSAVEIKIGQGAKPGIGGHLPGEKVTEPISETRMIPVGTDALSPAPHHDIYSIEDLRQLIYAIKEATRYEKPVGVKIAAVHNVAPIAAGAVRAGADYIVIDGIRGGTGAAPKITRDHVGIPIEFAVAVVDQRLREEGIRHMASIVVAGGIRNSADVIKAIALGADAVYIGTAALISLGCHLCQTCYLGKCNWGIATQDPKLTKRLNPEIGARRAANLLRAWAHEIKEILGGMGINAIESLRGNREVLRGVGLHEYELKLLGIKPAGEAW
>NZ_CP003408.1|WP_008191959.1|548999_550133_+|glutamine-amidotransferase-family-protein
MSYDLPRLIPDKDFKVPSACGVSGIMNTSGKRFSGSVIVESMALMRERGNGLGAGYAAYGIYPELKDLYCFHMLYDSDLDKKNAEEYIKDHYEIIESEPIPTRKNPHIKEVHILWRYFLKPKFIPEGMSEEDFVVSTVMFINEKINGAFVMSSGKNMGVFKGVGFPEDIADFYRIDEYKGYIWTAHNRFPTNTVGWWGGAHPFGILDWTVVHNGEISSYGINRRFLEAYGYKCTLMTDTEVVAYLVDLFMRRFGYSPQLTAKILAAPLWKDIDLMPEEERKLYTALRMNYGGALLNGPFAIIVANNNMMMGLNDRIKLRPLVAATKDDFLYIASEESAIRVVCPEPDEVWAPKAGDPVVGVLKSARKTQVVLEGENG
>NZ_CP003408.1|WP_081501856.1|547921_548599_-|response-regulator-transcription-factor
MNVRVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDKGFKKKIIHTVRGIGYVARDE
>NZ_CP003408.1|WP_008191963.1|546723_547941_-|HAMP-domain-containing-histidine-kinase
MLPVTSERKAFRKTQLIWTAVFTLSIVLIVAITVGAVFIVEKRRITTQFDGELRRTADLIERRLRAPGMMGMLRTFRGVDPLFVPRGEAFQFLLPSGEVFLEVGEQIGTPETPVEEGFSTEGNYRIFTKKIDLGDTTIFLRVGKDISDLIERSKRLLSMYLLVILFSAGGAAVFGYFVSSLALLPVRNAYNSLKRFSMDASHELKTPLSVLKTSLDVLKYREDLPDDVKNKLGIMEKNVEKMSKQINQLLLLVKSEGSLNSVVKERINLKDFLQQIVDEFKPKAESKGLELEIDCPEDLFLETEKDTLRVIMENLVDNAVKFTEKGKVIVGARKEGRLTIYVQDTGPGIPKKEQKRIFERFYRISRNTEGSGLGLSIVKELASRLKAKVILESEEGKGSTFKLVF
>NZ_CP003408.1|WP_008191964.1|546185_546740_+|thymidine-kinase
MSGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEKDTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVAGGEEEIDVGGQEKYIAVCRDCYNTLKKRV
>NZ_CP003408.1|WP_081501923.1|558394_559366_+|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MEMRFFVLGAGSWGTVFAQMLYENGEEVVLWARRKEIVDLINVSHTSPYVEESKITVRATNDLEEIKKEDVLVIAIPVQYIRKHLLRLPVKPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAVTLAGENSKELQKRISTEYFRVYTCEDVAGVEIAGALKNVIAIAAGILDGLGGWDNAKASLETRGIYEIARFGMFFGADQKTFMGLAGIGDLIVTCNSRYSRNRRFGELIARGFDPLKLLESSHQVVEGAFTVKAVMKMAKENKIDMPISEEVYRVIYERKSPLQSMRDLMRRSLKDEFWAS
>NZ_CP003408.1|WP_008193486.1|559471_560803_+|FAD-binding-protein
MKYDVVVVGGGPAGLVAAFTTKRFFGDKKILVVKKTEKEMVPCGIPYIFHTLGSVENDYMGIEDRFKSAGIDLLIDEVVDGNPDEKKLFTKSGKEVFYDKLIIATGSSPNTPKIPGVDLKGVFTVPKEADYLKLLHEKVKDANDVVIIGGGFIGVEVADEIKKSGKNVTLVEIMDSLLPVSFDPDFGELARKELESDNVKVLTGRKVTEILGTEKVEGVKLDSGETIPADVVVLATGYKPNSELARKLGLKVTELGFIETDEYMRTSKPDIFAAGDCVQHKDFLTGKPSRLMLASAAVFDARIAASNLYGLKVIRTNKGSLNAYSTVIGSKAFGSVGITERIAKEEGFEVVVGKAEAPDRHPGKFEDTSKLVVKLIFSEDSKILLGAQVCGGKSVGEIVNLISLGIQKGITANDLFTMQIGTHPLLTSAPTVYPLAKAAEMVL
>NZ_CP003408.1|WP_008193488.1|560827_561163_+|carboxymuconolactone-decarboxylase-family-protein
MTAKEKLEQIQKQLQEIIGKAPEIGKFAEYVHAAESPKALDTKTKELISLGIAVAVRCEPCIVWHAGAAVKAGATEEEILDTIKVAVCMGGGPALMYGLKAYEIALEFLGK
>NZ_CP003408.1|WP_008193489.1|561208_562558_+|dihydrolipoyl-dehydrogenase
MYDAVIIGGGPGGYVCAIKLAQLGKKVALVEKDALGGTCTNRGCIPTKAMLTVSHLMDEMKEKASKYGLKVAGVEYDVAAIMKHVQKSVMMSRKGIEYLLKKNGVEVFKGTAVVENKNTVVVQETGEKLEAKNLVLAHGSVPSVFSPFDIDGVWTSDDVFNLKEFPKSLVIVGGGVIGVEFATFFGSFGVDVTIVEIAEHILPYEDSDVAEEVKKALKRKGVKILEKTKVSSLSKVDDGFEVALENGETLKAEKVLLATGRKPNIPEDVKALGVKIEKGVVTDSRMRTNVENVYAIGDIRCGIMLAHVAMYEGIVAAKNIAGEEEEMDYSAVPSIIFSSPEVASVGVREKDVNPEEVVISRFPVSANGRARTMLENLGFAKVIADKKDGTVLGMSIVSPSATDMIMEGVIAVKFRMKAEDLEKAIHPHPTLTETILGALEGVSGKPIHL
>NZ_CP003408.1|WP_008193491.1|562534_563233_-|endonuclease-III-domain-containing-protein
MLIWFTPRIILSMRLTELYRKLLEIHGSVGKWWPGTPEEIVITAVLTQNTNWKNVERAMENIKNEVKGNNLLKELDSLSEEKMAELIRPAGFFNIKTKRLKELLKFLKEYNYDLSRLRDLPTHILRERFLKIKGIGKETADAILLYALEKPIFVVDSYTRRLLKRIFNIELNDYDEVQRLFMTHYPEDVQLYQEFHGLIVEHAKKFCSKTPKCDACPLRKECYHVSQMNRLS
>NZ_CP003408.1|WP_008193493.1|563225_563726_+|nitroreductase-family-protein
MSIIYRRRSIRKYQKKDVPGELVKEIIRAAMHAPSACNQQPWHFVVIRNEETKKKIAEIHPHAQMAAEAPVVILVCGDPTLEKCKGYWVQDCSAAVENLLLRATELGLGAVWCGVYPREERVKAFRELLGIPEHVVPFALVPVGYPAEHPVQVDRFKPERIHYEKW
>NZ_CP003408.1|WP_008193497.1|563851_564403_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MYVNRIGTFRDHPDLYGVSVYFQGCDAKPKCHMCHNPETWHLSEEYKRPSEVVTKIIDEKLSSLLRYFPKAALVFLGGEPLAPYNREEMLSLSKMFKEKYGERLTVLLFTWRLPKDIVKENLLKYVQYVDEFVMGRYLHTYRRDGFPASKNQIHIDRRTFERMIEAVLRRGHYEGSVFVRKRI
>NZ_CP003408.1|WP_008193499.1|564368_566324_+|anaerobic-ribonucleoside-triphosphate-reductase
MKVQYSFEREFEELMSDLLSKYGYEMFQMDGLGDQLDVVKFTEDFVRRGIIESTIDANANVRVTNISTYFIEISKPHTYLYSLYRIWQKMKEMFGKEIADEFVEAQINGAVYLHDRHHAALMPYCFAYTLQPIVEKGLPFIKTIKSEPAKHLSTFIQHVIQFVMFASNQSSGAVGLPDFFVWMWYFVKKDLEEGIIPRDKLDWYIEQHFQILTYSLNQPIRTTQSPYTNFTYLDRNYIKAIFEGERYPDGSLITDHVEDIIALQKHYWEWVSRERERQMFTFPVLTASLLYKDGKFLDEDSARFINKINMKWQDTNWYISDSIDAVASCCRLTSSTQTLKKFSLSSEEEEKLKGRMNSIGGSDLNIGSFKVITVNLPRIALESSGDREKYLQILRHRVQLIKKALAAIREIIKERISEGLLPLYENGLMLLNRQYGTIGITGVWESASIMGLTTEDIDGLKYTEEGEKFIDSVLDIIREEAEKGYHEYGFTFNIEQVPAEKAAVTLAQKDRFLFGEKQPFEIYSNQWVPLMANTDVLNRIRYSGKWDKKVSGGAILHINLGEPFKTEEESFNMVKMIADMGVMYFAFNTKISVCEDGHAFYGERCPVCGKAKVDEYMRIVGYLVPVSAFNKERREIEYPRRQFYDSLTIRK
>NZ_CP003408.1|WP_008193501.1|566404_567370_+|redoxin-domain-containing-protein
MRVKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGCTREAVEFSRENFEKAQVVGISRDSVEALKRFKERNDLKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALSQLLKEDLSLNKHIEWRRARRALKKDRVPREEIELLIKAAHLAPSCMNTQPWRFVVVDEEELLRKIHEALPGGNYWMKNAPVLIAVHSKKDFDCALPDNRDYFLFDTGLAVGNLLVQATQMGLVAHPVAGYDPVKVKEILKLPEDHVLITLIAVGYLGDENELSEKHRELERSERVRKDLSEILRWNL
>NZ_CP003408.1|WP_008193503.1|567366_568377_-|ABC-transporter-permease
MSEFLALLSAMWKESWRDKISTFFSIAFPVMFLLIFGFLLGGSGSTVKTAVVTADYELSDFGDVYSSLEEVKGYYHEIAVVEKDKIIFIRNTTDEYYQSLLDSWEVSLKNKVTRLLNGLNPVITVKKKTLKTTRKLTSFDYTLTGVIAVSLLSIGIFGTVDVFSRYRERGFLKRLKATPVGNFSFVFGLISARMFYGILSTALIMLLGTLIFKANYELNVFLFLISVVSSVLSFIALGALISILFKKSEVASDAAVIIFTIMMFLAGVYFPVSFLPDYLKVVSLFLPVKYGVELIRYSLGFEIFPFSRYIVTAVIMFIAGLLFVFYTASLVLRKED

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Crispr_ID: NZ_CP003408_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003408_2

570459-571677

Orphan

III-A

Consensus_repeat	Method
GTTTCCATACCTCTAAGGAATTATTGAAAC	CRISPRCasFinder
GTTTCCATACCTCTAAGGAANTATTGAAAC	CRT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	PILER-CR

18 spacers

The CRISPR arrays of NZ_CP003408_2

>merge|NZ_CP003408|2|570459-571677|CRISPRCasFinder,CRT,PILER-CR
ATTTCCGCACCTCTGAGGAAGTAGTGAAACCTTTTTGGAGAGCTCATCAACCGTCTGTGCGTGTTTCCATACCTCTAAGGAAGTATTGAAACTTCAAGGTTGATTTCATGGAAGGAAAGGTTTTTATGTTTCCATACCTCTAAGGAACTATTGAAACTTATAGGACTTTCGGGTGTTGGTTGTGTGCTTGCCTCGTTTCCATACCTCTAAGGAACTATTGAAACTTGGAGGTGATACGATGCGTGGGATTTATGTACTTGTGTTTCCATACCTCTAAGGAACTATTGAAACGGTTCCGTGGAAAGATCTTGTCGTCGGCATCTCGAAGTTTCCATACCTCTAAGGAACTATTGAAACTTGAGCTTCTCGACTGTTTCTTTGACTCCTTCGATCTGTTTCCATACCTCTAAGGAACTATTGAAACAAAAGTTCTGGAAGGGGCAGTTCTTTCAGAATATTTCGTTTCCATACCTCTAAGGAACTATTGAAACCCTCTTCCATCCAGATGTAATTGAATTCCGCCGACTGTTTCCATACCTCTAAGGAACTATTGAAACAAGGAATGATTGAAACAGTGAAAGGGCGGAGCACTCACGTTTCCATACCTCTAAGGAACTATTGAAACAGGTTTATAACGGCTGTGTGGTAAGAGGAATAAGCGGTTTCCATACCTCTAAGGAACTATTGAAACCTCAGGGAGGAGGGATTAGCATGAGGAAGTTTTATGTGTTTCCATACCTCTAAGGAATTATTGAAACTGACTTCTCTGGGATAGGAAAACGCCGGCCAAATGGGTTTCCATACCTCTAAGGAATTATTGAAACCGGTGTAGATGACGTCAGCGATCTCAAGGTGGCTCTGTTTCCATACCTCTAAGGAATTATTGAAACCTACAACTACGGCGTCACGGCTTATCTCATCGCCGGTTTCCATACCTCTAAGGAATTATTGAAACTTTTTTGTTGGAAACCTACCATGTGAAAGTTATCACGGTTTCCATACCTCTAAGGAATTATTGAAACCACTCGAGGACGGCGATGAGGTTCTCGTTTGCAGACGTTTCCATACCTCTAAGGAATTATTGAAACCGATTTCGACCATACGCTTGAAATCTTCCCTCAGCTGTTTCCATACCTCTAAGGAATTATTGAAACAAAAGCGGGGAGTAATAGACCCGCGCAAAGTCCGAGTTTCCATACCTCTAAGGAATTATTGAAAC

>NZ_CP003408|2|2|570459-571677|CRISPRCasFinder
ATTTCCGCACCTCTGAGGAAGTAGTGAAAC	CTTTTTGGAGAGCTCATCAACCGTCTGTGCGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TTCAAGGTTGATTTCATGGAAGGAAAGGTTTTTAT
GTTTCCATACCTCTAAGGAACTATTGAAAC	TTATAGGACTTTCGGGTGTTGGTTGTGTGCTTGCCTC
GTTTCCATACCTCTAAGGAACTATTGAAAC	TTGGAGGTGATACGATGCGTGGGATTTATGTACTTGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GGTTCCGTGGAAAGATCTTGTCGTCGGCATCTCGAA
GTTTCCATACCTCTAAGGAACTATTGAAAC	TTGAGCTTCTCGACTGTTTCTTTGACTCCTTCGATCT
GTTTCCATACCTCTAAGGAACTATTGAAAC	AAAAGTTCTGGAAGGGGCAGTTCTTTCAGAATATTTC
GTTTCCATACCTCTAAGGAACTATTGAAAC	CCTCTTCCATCCAGATGTAATTGAATTCCGCCGACT
GTTTCCATACCTCTAAGGAACTATTGAAAC	AAGGAATGATTGAAACAGTGAAAGGGCGGAGCACTCAC
GTTTCCATACCTCTAAGGAACTATTGAAAC	AGGTTTATAACGGCTGTGTGGTAAGAGGAATAAGCG
GTTTCCATACCTCTAAGGAACTATTGAAAC	CTCAGGGAGGAGGGATTAGCATGAGGAAGTTTTATGT
GTTTCCATACCTCTAAGGAATTATTGAAAC	TGACTTCTCTGGGATAGGAAAACGCCGGCCAAATGG
GTTTCCATACCTCTAAGGAATTATTGAAAC	CGGTGTAGATGACGTCAGCGATCTCAAGGTGGCTCT
GTTTCCATACCTCTAAGGAATTATTGAAAC	CTACAACTACGGCGTCACGGCTTATCTCATCGCCG
GTTTCCATACCTCTAAGGAATTATTGAAAC	TTTTTTGTTGGAAACCTACCATGTGAAAGTTATCACG
GTTTCCATACCTCTAAGGAATTATTGAAAC	CACTCGAGGACGGCGATGAGGTTCTCGTTTGCAGAC
GTTTCCATACCTCTAAGGAATTATTGAAAC	CGATTTCGACCATACGCTTGAAATCTTCCCTCAGCT
GTTTCCATACCTCTAAGGAATTATTGAAAC	AAAAGCGGGGAGTAATAGACCCGCGCAAAGTCCGA
GTTTCCATACCTCTAAGGAATTATTGAAAC

>NZ_CP003408|2|2|570459-571677|CRT
ATTTCCGCACCTCTGAGGAAGTAGTGAAAC	CTTTTTGGAGAGCTCATCAACCGTCTGTGCGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TTCAAGGTTGATTTCATGGAAGGAAAGGTTTTTAT
GTTTCCATACCTCTAAGGAACTATTGAAAC	TTATAGGACTTTCGGGTGTTGGTTGTGTGCTTGCCTC
GTTTCCATACCTCTAAGGAACTATTGAAAC	TTGGAGGTGATACGATGCGTGGGATTTATGTACTTGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GGTTCCGTGGAAAGATCTTGTCGTCGGCATCTCGAA
GTTTCCATACCTCTAAGGAACTATTGAAAC	TTGAGCTTCTCGACTGTTTCTTTGACTCCTTCGATCT
GTTTCCATACCTCTAAGGAACTATTGAAAC	AAAAGTTCTGGAAGGGGCAGTTCTTTCAGAATATTTC
GTTTCCATACCTCTAAGGAACTATTGAAAC	CCTCTTCCATCCAGATGTAATTGAATTCCGCCGACT
GTTTCCATACCTCTAAGGAACTATTGAAAC	AAGGAATGATTGAAACAGTGAAAGGGCGGAGCACTCAC
GTTTCCATACCTCTAAGGAACTATTGAAAC	AGGTTTATAACGGCTGTGTGGTAAGAGGAATAAGCG
GTTTCCATACCTCTAAGGAACTATTGAAAC	CTCAGGGAGGAGGGATTAGCATGAGGAAGTTTTATGT
GTTTCCATACCTCTAAGGAATTATTGAAAC	TGACTTCTCTGGGATAGGAAAACGCCGGCCAAATGG
GTTTCCATACCTCTAAGGAATTATTGAAAC	CGGTGTAGATGACGTCAGCGATCTCAAGGTGGCTCT
GTTTCCATACCTCTAAGGAATTATTGAAAC	CTACAACTACGGCGTCACGGCTTATCTCATCGCCG
GTTTCCATACCTCTAAGGAATTATTGAAAC	TTTTTTGTTGGAAACCTACCATGTGAAAGTTATCACG
GTTTCCATACCTCTAAGGAATTATTGAAAC	CACTCGAGGACGGCGATGAGGTTCTCGTTTGCAGAC
GTTTCCATACCTCTAAGGAATTATTGAAAC	CGATTTCGACCATACGCTTGAAATCTTCCCTCAGCT
GTTTCCATACCTCTAAGGAATTATTGAAAC	AAAAGCGGGGAGTAATAGACCCGCGCAAAGTCCGA
GTTTCCATACCTCTAAGGAATTATTGAAAC

>NZ_CP003408|2|2|570521-571677|PILER-CR
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TTCAAGGTTGATTTCATGGAAGGAAAGGTTTTTAT
GTTTCCATACCTCTAAGGAACTATTGAAAC	TTATAGGACTTTCGGGTGTTGGTTGTGTGCTTGCCTC
GTTTCCATACCTCTAAGGAACTATTGAAAC	TTGGAGGTGATACGATGCGTGGGATTTATGTACTTGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GGTTCCGTGGAAAGATCTTGTCGTCGGCATCTCGAA
GTTTCCATACCTCTAAGGAACTATTGAAAC	TTGAGCTTCTCGACTGTTTCTTTGACTCCTTCGATCT
GTTTCCATACCTCTAAGGAACTATTGAAAC	AAAAGTTCTGGAAGGGGCAGTTCTTTCAGAATATTTC
GTTTCCATACCTCTAAGGAACTATTGAAAC	CCTCTTCCATCCAGATGTAATTGAATTCCGCCGACT
GTTTCCATACCTCTAAGGAACTATTGAAAC	AAGGAATGATTGAAACAGTGAAAGGGCGGAGCACTCAC
GTTTCCATACCTCTAAGGAACTATTGAAAC	AGGTTTATAACGGCTGTGTGGTAAGAGGAATAAGCG
GTTTCCATACCTCTAAGGAACTATTGAAAC	CTCAGGGAGGAGGGATTAGCATGAGGAAGTTTTATGT
GTTTCCATACCTCTAAGGAATTATTGAAAC	TGACTTCTCTGGGATAGGAAAACGCCGGCCAAATGG
GTTTCCATACCTCTAAGGAATTATTGAAAC	CGGTGTAGATGACGTCAGCGATCTCAAGGTGGCTCT
GTTTCCATACCTCTAAGGAATTATTGAAAC	CTACAACTACGGCGTCACGGCTTATCTCATCGCCG
GTTTCCATACCTCTAAGGAATTATTGAAAC	TTTTTTGTTGGAAACCTACCATGTGAAAGTTATCACG
GTTTCCATACCTCTAAGGAATTATTGAAAC	CACTCGAGGACGGCGATGAGGTTCTCGTTTGCAGAC
GTTTCCATACCTCTAAGGAATTATTGAAAC	CGATTTCGACCATACGCTTGAAATCTTCCCTCAGCT
GTTTCCATACCTCTAAGGAATTATTGAAAC	AAAAGCGGGGAGTAATAGACCCGCGCAAAGTCCGA
GTTTCCATACCTCTAAGGAATTATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003408.1\|WP_008193501.1\|566404_567370_+\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380315
NZ_CP003408.1\|WP_008193523.1\|572303_573029_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP003408.1\|WP_008193539.1\|582236_582914_-\|TIGR00266-family-protein	unknown	unknown	gnl\|CDD\|224924
NZ_CP003408.1\|WP_008193529.1\|573724_574168_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NZ_CP003408.1\|WP_008193505.1\|568369_569455_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NZ_CP003408.1\|WP_008193533.1\|576207_579210_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP003408.1\|WP_004083187.1\|574183_575974_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP003408.1\|WP_081501947.1\|579796_580558_+\|KaiC-domain-containing-protein	unknown	unknown	gnl\|CDD\|235281
NZ_CP003408.1\|WP_155982632.1\|569451_570360_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP003408.1\|WP_008193493.1\|563225_563726_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380325
NZ_CP003408.1\|WP_008193503.1\|567366_568377_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NZ_CP003408.1\|WP_008193491.1\|562534_563233_-\|endonuclease-III-domain-containing-protein	unknown	unknown	gnl\|CDD\|225140
NZ_CP003408.1\|WP_008193499.1\|564368_566324_+\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|181342
NZ_CP003408.1\|WP_008193489.1\|561208_562558_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|273568
NZ_CP003408.1\|WP_008193488.1\|560827_561163_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NZ_CP003408.1\|WP_008193527.1\|573107_573695_+\|phosphate-propanoyltransferase	unknown	unknown	gnl\|CDD\|237899
NZ_CP003408.1\|WP_004083185.1\|579199_579658_-\|arginine-repressor	unknown	unknown	gnl\|CDD\|130592
NZ_CP003408.1\|WP_008193538.1\|581007_582117_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP003408.1\|WP_008193497.1\|563851_564403_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl\|CDD\|274317
NZ_CP003408.1\|WP_004083181.1\|580554_580998_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224237

Protein	Function_ID	Function_description	E-value
NZ_CP003408.1\|WP_008193501.1\|566404_567370_+\|redoxin-domain-containing-protein	gnl\|CDD\|380315	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to Burkholderia pseudomallei TdsD, may be involved in the processing of organosulfur compounds. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	1.61824e-78
NZ_CP003408.1\|WP_008193523.1\|572303_573029_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	2.29932e-24
NZ_CP003408.1\|WP_008193539.1\|582236_582914_-\|TIGR00266-family-protein	gnl\|CDD\|224924	COG2013, COG2013, Uncharacterized conserved protein [Function unknown].	9.01754e-88
NZ_CP003408.1\|WP_008193529.1\|573724_574168_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	3.00612e-34
NZ_CP003408.1\|WP_008193505.1\|568369_569455_-\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	1.60064e-15
NZ_CP003408.1\|WP_008193533.1\|576207_579210_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP003408.1\|WP_004083187.1\|574183_575974_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP003408.1\|WP_081501947.1\|579796_580558_+\|KaiC-domain-containing-protein	gnl\|CDD\|235281	PRK04328, PRK04328, hypothetical protein; Provisional.	3.16974e-171
NZ_CP003408.1\|WP_155982632.1\|569451_570360_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	8.69291e-98
NZ_CP003408.1\|WP_008193493.1\|563225_563726_+\|nitroreductase-family-protein	gnl\|CDD\|380325	cd02150, nitroreductase, nitroreductase family protein. A subfamily of the nitroreductase family containing uncharacterized proteins. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.often found to be homodimers.	1.47838e-96
NZ_CP003408.1\|WP_008193503.1\|567366_568377_-\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	5.33325e-17
NZ_CP003408.1\|WP_008193491.1\|562534_563233_-\|endonuclease-III-domain-containing-protein	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	5.77946e-93
NZ_CP003408.1\|WP_008193499.1\|564368_566324_+\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|181342	PRK08271, PRK08271, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
NZ_CP003408.1\|WP_008193489.1\|561208_562558_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|273568	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase. This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.	0
NZ_CP003408.1\|WP_008193488.1\|560827_561163_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	4.96647e-20
NZ_CP003408.1\|WP_008193527.1\|573107_573695_+\|phosphate-propanoyltransferase	gnl\|CDD\|237899	PRK15070, PRK15070, phosphate propanoyltransferase.	5.00867e-130
NZ_CP003408.1\|WP_004083185.1\|579199_579658_-\|arginine-repressor	gnl\|CDD\|130592	TIGR01529, Arginine_repressor., arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs. [Amino acid biosynthesis, Glutamate family, Regulatory functions, DNA interactions].	1.02883e-68
NZ_CP003408.1\|WP_008193538.1\|581007_582117_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.33179e-38
NZ_CP003408.1\|WP_008193497.1\|563851_564403_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl\|CDD\|274317	TIGR02826, hypothetical_protein, anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of radical SAM enzymes related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	1.19899e-66
NZ_CP003408.1\|WP_004083181.1\|580554_580998_+\|transcriptional-regulator	gnl\|CDD\|224237	COG1318, COG1318, Predicted transcriptional regulators [Transcription].	1.14491e-38

>NZ_CP003408.1|WP_155982632.1|569451_570360_-|ATP-binding-cassette-domain-containing-protein
MYGSITFKGGIFLEVLKVVDLKKHYGDVKAVDGISFTVERGTVFSFLGPNGAGKTTTVEILEGLRKKDSGEIYYFGERKEILDRETKRKIGVCLQKSAFFENLTVWETLKLFRGLYGTGLDLKKVMGLFSLENIEKKMVKTLSGGQLQRLAVAVAFINDPEIVFLDEPTTGLDPQARRQIWDIIEHFKNLGKTIFLTTHYMEEAEKLSDHVCIIDHGKIIAEGTPSSLISSSGLKTVVEFDCDQDVNVKYLEKKENHYVVETDTPEELIKDLLKNWNVSNIVIRKPNLEDVFLKLTGRDLRE
>NZ_CP003408.1|WP_008193505.1|568369_569455_-|ABC-transporter-permease
MRHLVFSILKNDYFRTKSVLFWNFLFPILLYLILVSIFGDVPSNMNLKIGLVGESSIAESVFKNFPSGIEIVETNDPEKDLKYGKIDVCVILPENFDNLFTKAIIFSKTKISVPVEITVLYAPERQESVVLANVVSNILESLDLQLRKVKEVEVEYRKKERQAINYSHYILPAILLVGVMSVGLFTIPYQLALYREQGILKRILASPLKGYHYFFSIVVCGLFAMSITSASVTLFARFVYKVEFPINSSFLSGVLLSFLTFLSVSLLMVSLFRTFSALSVASQVFNQVFMFLGGFYFDVSGIPWPIKAVVLGNPATYLVDYLRGSFGYRTIYSNHFLVPIVWIVFSLILFLLNWRKVMVVE
>NZ_CP003408.1|WP_008193503.1|567366_568377_-|ABC-transporter-permease
MSEFLALLSAMWKESWRDKISTFFSIAFPVMFLLIFGFLLGGSGSTVKTAVVTADYELSDFGDVYSSLEEVKGYYHEIAVVEKDKIIFIRNTTDEYYQSLLDSWEVSLKNKVTRLLNGLNPVITVKKKTLKTTRKLTSFDYTLTGVIAVSLLSIGIFGTVDVFSRYRERGFLKRLKATPVGNFSFVFGLISARMFYGILSTALIMLLGTLIFKANYELNVFLFLISVVSSVLSFIALGALISILFKKSEVASDAAVIIFTIMMFLAGVYFPVSFLPDYLKVVSLFLPVKYGVELIRYSLGFEIFPFSRYIVTAVIMFIAGLLFVFYTASLVLRKED
>NZ_CP003408.1|WP_008193501.1|566404_567370_+|redoxin-domain-containing-protein
MRVKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGCTREAVEFSRENFEKAQVVGISRDSVEALKRFKERNDLKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALSQLLKEDLSLNKHIEWRRARRALKKDRVPREEIELLIKAAHLAPSCMNTQPWRFVVVDEEELLRKIHEALPGGNYWMKNAPVLIAVHSKKDFDCALPDNRDYFLFDTGLAVGNLLVQATQMGLVAHPVAGYDPVKVKEILKLPEDHVLITLIAVGYLGDENELSEKHRELERSERVRKDLSEILRWNL
>NZ_CP003408.1|WP_008193499.1|564368_566324_+|anaerobic-ribonucleoside-triphosphate-reductase
MKVQYSFEREFEELMSDLLSKYGYEMFQMDGLGDQLDVVKFTEDFVRRGIIESTIDANANVRVTNISTYFIEISKPHTYLYSLYRIWQKMKEMFGKEIADEFVEAQINGAVYLHDRHHAALMPYCFAYTLQPIVEKGLPFIKTIKSEPAKHLSTFIQHVIQFVMFASNQSSGAVGLPDFFVWMWYFVKKDLEEGIIPRDKLDWYIEQHFQILTYSLNQPIRTTQSPYTNFTYLDRNYIKAIFEGERYPDGSLITDHVEDIIALQKHYWEWVSRERERQMFTFPVLTASLLYKDGKFLDEDSARFINKINMKWQDTNWYISDSIDAVASCCRLTSSTQTLKKFSLSSEEEEKLKGRMNSIGGSDLNIGSFKVITVNLPRIALESSGDREKYLQILRHRVQLIKKALAAIREIIKERISEGLLPLYENGLMLLNRQYGTIGITGVWESASIMGLTTEDIDGLKYTEEGEKFIDSVLDIIREEAEKGYHEYGFTFNIEQVPAEKAAVTLAQKDRFLFGEKQPFEIYSNQWVPLMANTDVLNRIRYSGKWDKKVSGGAILHINLGEPFKTEEESFNMVKMIADMGVMYFAFNTKISVCEDGHAFYGERCPVCGKAKVDEYMRIVGYLVPVSAFNKERREIEYPRRQFYDSLTIRK
>NZ_CP003408.1|WP_008193497.1|563851_564403_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MYVNRIGTFRDHPDLYGVSVYFQGCDAKPKCHMCHNPETWHLSEEYKRPSEVVTKIIDEKLSSLLRYFPKAALVFLGGEPLAPYNREEMLSLSKMFKEKYGERLTVLLFTWRLPKDIVKENLLKYVQYVDEFVMGRYLHTYRRDGFPASKNQIHIDRRTFERMIEAVLRRGHYEGSVFVRKRI
>NZ_CP003408.1|WP_008193493.1|563225_563726_+|nitroreductase-family-protein
MSIIYRRRSIRKYQKKDVPGELVKEIIRAAMHAPSACNQQPWHFVVIRNEETKKKIAEIHPHAQMAAEAPVVILVCGDPTLEKCKGYWVQDCSAAVENLLLRATELGLGAVWCGVYPREERVKAFRELLGIPEHVVPFALVPVGYPAEHPVQVDRFKPERIHYEKW
>NZ_CP003408.1|WP_008193491.1|562534_563233_-|endonuclease-III-domain-containing-protein
MLIWFTPRIILSMRLTELYRKLLEIHGSVGKWWPGTPEEIVITAVLTQNTNWKNVERAMENIKNEVKGNNLLKELDSLSEEKMAELIRPAGFFNIKTKRLKELLKFLKEYNYDLSRLRDLPTHILRERFLKIKGIGKETADAILLYALEKPIFVVDSYTRRLLKRIFNIELNDYDEVQRLFMTHYPEDVQLYQEFHGLIVEHAKKFCSKTPKCDACPLRKECYHVSQMNRLS
>NZ_CP003408.1|WP_008193489.1|561208_562558_+|dihydrolipoyl-dehydrogenase
MYDAVIIGGGPGGYVCAIKLAQLGKKVALVEKDALGGTCTNRGCIPTKAMLTVSHLMDEMKEKASKYGLKVAGVEYDVAAIMKHVQKSVMMSRKGIEYLLKKNGVEVFKGTAVVENKNTVVVQETGEKLEAKNLVLAHGSVPSVFSPFDIDGVWTSDDVFNLKEFPKSLVIVGGGVIGVEFATFFGSFGVDVTIVEIAEHILPYEDSDVAEEVKKALKRKGVKILEKTKVSSLSKVDDGFEVALENGETLKAEKVLLATGRKPNIPEDVKALGVKIEKGVVTDSRMRTNVENVYAIGDIRCGIMLAHVAMYEGIVAAKNIAGEEEEMDYSAVPSIIFSSPEVASVGVREKDVNPEEVVISRFPVSANGRARTMLENLGFAKVIADKKDGTVLGMSIVSPSATDMIMEGVIAVKFRMKAEDLEKAIHPHPTLTETILGALEGVSGKPIHL
>NZ_CP003408.1|WP_008193488.1|560827_561163_+|carboxymuconolactone-decarboxylase-family-protein
MTAKEKLEQIQKQLQEIIGKAPEIGKFAEYVHAAESPKALDTKTKELISLGIAVAVRCEPCIVWHAGAAVKAGATEEEILDTIKVAVCMGGGPALMYGLKAYEIALEFLGK
>NZ_CP003408.1|WP_008193523.1|572303_573029_+|sulfite-exporter-TauE/SafE-family-protein
MIVLVFLGGILAGFLNVLAGGGSMITLPILTALGLGIDVANGTNRIAIILQNLVAIERFKAKKVLKIKEAILVALPAIAGAVLGSSIAVQIEKEMLQKIVGAIFLVMAVSLVWKPRIWLEDRSVKRNWVLIYIVFFLIGIYGGFIQAGVGFLLMPAIALLLGYELVKTNAIKVFIVASYNIISLVIFILNGKVNFLYGFILALGNMTGAWLAATFSIKKGANWVRWIVFAAIIVVGIRYVF
>NZ_CP003408.1|WP_008193527.1|573107_573695_+|phosphate-propanoyltransferase
MTKKEPGIIVGVSNRHVHLSKEDLEILFGKGYELTPIKDLRQPGQYAAKETVTIVGPKGAIENVRVLGPVRRETQVEISRTDAFKLGLRPPVRDSGDLEGTPGIVIIGPNGILVKEKGVIIAKRHIHMHPKDAEHYGVKDKDLVKVIVESGDRKLIFDDVLIRVREDFALEFHVDTDEANAAMLNTGDFVYIVEF
>NZ_CP003408.1|WP_008193529.1|573724_574168_-|Hsp20/alpha-crystallin-family-protein
MLLGRREDIFRPFRELQREIDRLFDDFFRTEVRPAKEFFAPEMDVYETDDEVVIEVEIPGIDRKDVKITVEENILKISGEKKLEREQKGKNYYYVERSAGKFERAIRLPDYVDVEKIKAEYKNGVLTIRVPKKEERKKKVIEVEVQE
>NZ_CP003408.1|WP_004083187.1|574183_575974_-|molecular-chaperone-DnaK
MAEKKEFVVGIDLGTTNSVIAWMKPDGTVEVIPNAEGSRVTPSVVAFTKSGEILVGEPAKRQMILNPERTIKSIKRKMGTDYKVRIDDKEYTPQEISAFILKKLKNDAEAYLGGEIKKAVITCPAYFNDAQRQATKEAGIIAGLEVLRIINEPTAAALAYGLDKAGKEEKVLVYDLGGGTFDVSILEIGEGVIEVIATAGNNHLGGDDFDQRLIDWMAEEFKKQHGIDLREDRQALQRLRDAAEKAKIELSTKMETDVSLPFIAVSPSGQPLHLEMRITRSLFESLTRDLVEMTRGPIEQALNDAKLSPQDIDEIILVGGMTRVPMVQRFIKEFFGKEPNKSVNPDEAVAIGAAIQAAILAGTEGAKGRDIVLVDVTPLTLGIEVKGGLFEPIIPRNTKIPVRKSKIFTTVEDGQTEVEIRVYQGERPIARENIFLGSFKLVGIPPAPRGVPQIEVTFDIDSDGIVHVSAKDLGSGKEQSMVVTGRHKLSEDEIKRMIEDAKRYEEQDKRLKEEIELKNRADDLAYSVEKTLKEHGDKIPADLKSRLEDMIRELRDAINRNDIPKVKMLFDDLQKESMKIGEYLYKSATGGETSNQ
>NZ_CP003408.1|WP_008193533.1|576207_579210_+|efflux-RND-transporter-permease-subunit
MKIAEISSKRPIAIFMLLMAVVFLGFISFQHLKLDLLPQIEYPYAVVITTYMGAGTEEVEELVTKPLEGYISSTPGVRRFTSMSMDSVSFILVEFDWNVKTSEAVGRLSRYVDLATRDLPEGANPVVVEFDPSLLPVYAFSTEENCEDVVSKIKRLPEVASVEVMGKPEKIVEIVLDQEKIKRFDVDPSLIETILSGNLVYPFGYVSDSEGNIYPVSVDGRFENIEDLKNTIVGFRGVKYQSLLQGKVPNILVPVRLRNIAEVNITNESVQGEVRVNGKKASLIAIYKRSGANTVKTVREIKRILRDSKINYIEAMNQAYYTERAIDNLLKNLLYGFIAAFVVVLIFLKDFTSTIVTSFSIPLSLTITFVLLYAFGLNLDTLTLGGLIMALGMLVDNSIVVFENIYRHRSLGDPIPDSARKGAGEVWLAILASTLTTVSVFLPIVFFTGFVVRLFKYFAIAFVFALSSSLFVSTVVVPAGTRWIKPRRGKLTEALQKHYRKALEWCLKRKKLVLVISFSLVAISVIYLLSKPLGFLPSFQTNLMVIDVKLPSQSSYEKTAEAVKQIEDYLNEHRDEYKISSFYAEVGITNVYSQIMGRGQNEARIMVNLGGSRREFAKNREKLKNAISQLNIPEAKIEVLEQSQQIYEILGYPVTIEVRGDDLSLIQEKAKEIFERLRELKEVKKIQIRNSFEKEVLHVRIDRNKALMNGVVAGQVFLDLQTYLLGKKIGTLRTEEGTLPIVLKKAKSLSPEELPKISLTGLKGDVPLGAVSRISRRTLPSIVEHSDGERVVYVDLVSIEGSIGEVAKKVEKLLNEIDLSGVKVEITGQKSFMDEAFSELQYVVYIAIALVYMILAAQFESFVLPFVIFFTIPFAVVGVAFAVFVNGYSLNVPVLVGLLTLSGTVVNNAIVMLTRIEQIRQEKGLLEATLEGAQNRLRPILMTTFTTIVALLPTALSHAEGSEIESPISWVVIFGMLISMLFTLFVIPVIYTAIRRKVRV
>NZ_CP003408.1|WP_004083185.1|579199_579658_-|arginine-repressor
MKISKKRRQELIRKIIHEKKISNQFQIVEELKKYGIKAVQPTVARDLKEIGAVKIMDESGNYVYKLLDETPVIDPWKELKRNFKSFVESIDRAGNLIVIKTIPGTASGIARVIDRLDIDEIVGTLAGDDTIFVAVRDPESCEKIVEKLSSIL
>NZ_CP003408.1|WP_081501947.1|579796_580558_+|KaiC-domain-containing-protein
MIAKIIVGGGKMIKRVKTGIPGMDEILHGGIPERNIVLISGGPGTGKTIFSQQFIWNGLQMGEPGIYVALEEHPVQVKKNMEVFGWNVDPFEKEGKFAIVDAFTGGIGEYAEKEKYVVRDIDDVRELAEVLKRAVRETQAKRVVIDSVTTLYITKPAMARSIIFQLKRILSGLGCTSLFVSQVSVTEKGFGGPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVIYPSEGGEGR
>NZ_CP003408.1|WP_004083181.1|580554_580998_+|transcriptional-regulator
MKLNFNPVTKEEIHQLETALLVGTLFRKEVLEEIRNSAERLTWVDSLAVAAGALARAKAGMTASEIAEELGRTEATIREHVKGETKAGKLVNETYELLKEGKLSVEGLIGEGIKVVTTTTGSDEKLQEVKKELEEIKQKLESVIQKL
>NZ_CP003408.1|WP_008193538.1|581007_582117_-|MFS-transporter
MLFLTNVLRSMGTMSFNLLIQLRMKEIGATLFLIGLLSSLQGAMNTFSNVFWGRISDKIGKRKVFIILSLVLASAFYPLYAVIDVPSAILIVSMIIAFFNGMYPPAAMALSSTAKKMSLGFSLYNSSNSLGMLLSRISIGFLLMFIDLKLAFVFFSIVVAVSVIPALGLKEEKIQKKKEEDFHFGRKVMEHGIWALYLGSLLRQMGTSGSMSLIAVYLNERFHYSASTIGFITAVNPLVQIPSHFLFGKMVEKVDPKFISVLGIFMSSLVPFLMMIPENWAPVLAYAFLGASFGAFINGSNNFLGRRFHYLQRGRALGLLSSARFLGATIGPFLAGLLAEKSYSLMFSTLGLAVLSGGIVVLLFTKGGD
>NZ_CP003408.1|WP_008193539.1|582236_582914_-|TIGR00266-family-protein
MKYEIVLKGSYALLKVFLSIGESVVVEPGAMVYMKGPIEVNTSATGGVWKALKRAILGGENFFMNTYISRGESEVGLAPQLPGDIDVIPLKDILYVQSTSFLACDPSVEMDVSFGGLKSFFSGEGIFLLKFVGHGDVAVSSFGGIKSIELQSGEEFTVDTGHVVAFDGTVKWNVRTFGGLKSTLFGGEGLVCTFTGPGRIYVQTRNYPAFVEWIKSLVPRQTGSR

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Crispr_ID: NZ_CP003408_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003408_3

599826-601733

Orphan

III-A

Consensus_repeat	Method
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CRISPRCasFinder
GTTTCCATACCTCTAAGGAANTATTGAAAC	CRT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	PILER-CR

28 spacers

The CRISPR arrays of NZ_CP003408_3

>merge|NZ_CP003408|3|599826-601733|CRISPRCasFinder,CRT,PILER-CR
ATTTCCATGCCTCTAAGGAAGTATTGAAACTTAAGATGTCTATACCGGGCATTCTACAAAACAGCGTTTCCATACCTCTAAGGAATTATTGAAACGTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGTGTTTCCATACCTCTAAGGAACTATTGAAACGTACATGGGTTGCTGCGGCAATGAATCCAGAAACCGAGTTTCCATACCTCTAAGGAACTATTGAAACGATGATGATGTAATTGTTCTTTCAGGTAGTAGATACGAGTTTCCATACCTCTAAGGAACTATTGAAACATTGCGAGAGATCAGAAATATTCTCCGCTTTGTAAAGTTTCCATACCTCTAAGGAACTATTGAAACTAAAGGATATGAGATACTCACTACTGAGAAATCATTGTTTCCATACCTCTAAGGAACTATTGAAACGTGTATTGTGCTTTTGTTCAGAATGCTTTCGAGTCTGTGTTTCCATACCTCTAAGGAACTATTGAAACAAGAACCCCGCAGACAAAGGAAACGTCACTCCCGAGTTTCCATACCTCTAAGGAACTATTGAAACCTGGCGACATCCTACACGCTACAAGAAGATTCTCTTCTACGCGTTTCCATACCTCTAAGGAACTATTGAAACCAGGCACGGTCGCGTACTGGACGAACTCGTTAGTGGACGAGATGTTTCCATACCTCTAAGGAACTATTGAAACGAATAATCTCTTGAATTTTCCATAATCGTCCCTCCCCTGTTTCCATACCTCTAAGGAACTATTGAAACTGGAGGAGGGGACGACAAATTTCTACCAAAATCCACTATTGTTTCCATACCTCTAAGGAACTATTGAAACCAGCAAGAAACCTCGGTGTCTCGCTGAGAGAAGCAAGTTTCCATACCTCTAAGGAAGTATTGAAACCTTCACCGCATCAATTATTTCGTCTGTTTTATCTTTTGTTTCCATACCTCTAAGGAAGTATTGAAACGATATACGTAGGTAACGTTGCATCAAACGACCTCATGTTTCCATACCTCTAAGGAAGTATTGAAACCAAGGTGAAAAACCGAAGCCAAACCTCCCTTTCGAAAGTTTCCATACCTCTAAGGAAGTATTGAAACCAACTGAAGCATCAAAAATTATGTCCAATGCTCCGGGTTTCCATACCTCTAAGGAAGTATTGAAACCGATATCCGCCTCCTGAAGCCATTTGTAGAGTTCCCGTTTCCATACCTCTAAGGAAGTATTGAAACTGTAAAAGATATTGGAAAAATGTACCAAGTGTACTCAACGTTTCCATACCTCTAAGGAAGTATTGAAACTTCGCTCTCCCGCTTTGACTACCATTCGCAGAGGGTGTTTCCATACCTCTAAGGAAGTATTGAAACCACTAACCACCGCAGGTATTCGCTCTGCGGAAGCGGGTTTCCATACCTCTAAGGAAGTATTGAAACGGCGATGAGATCCTCGTCTGCAAGTTGAAGTACCGCTGTTTCCATACCTCTAAGGAAGTATTGAAACGAAACTTGCCGAGAAAATGGCTGAATCTAAGAATGGTTTCCATACCTCTAAGGAAGTATTGAAACGGAGGTGGAATTATGTTCAGAGTGTATGGCAAAAACGGTTTCCATACCTCTAAGGAAGTATTGAAACGGGGCGAATGGCACCGCATAAAAGAAGTGTATATGTAGTTTCCATACCTCTAAGGAAGTATTGAAACATTCCAAGTAGAAGTGGATGATCCTGAAATTCTGCAGTGTTTCCATACCTCTAAGGAAGTATTGAAACGCGGAGCCGTGATAAAAGCAGCTGTTGATCCTTGCGGTTTCCATACCTCTAAGGAAGTATTGAAACACACACAAGACTTGACACGACGTGGTAGGATAGGGGTTTCCATACCTCTAAGGAAGTATTGAAAC

>NZ_CP003408|3|3|599826-601733|CRISPRCasFinder
ATTTCCATGCCTCTAAGGAAGTATTGAAAC	TTAAGATGTCTATACCGGGCATTCTACAAAACAGC
GTTTCCATACCTCTAAGGAATTATTGAAAC	GTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GTACATGGGTTGCTGCGGCAATGAATCCAGAAACCGA
GTTTCCATACCTCTAAGGAACTATTGAAAC	GATGATGATGTAATTGTTCTTTCAGGTAGTAGATACGA
GTTTCCATACCTCTAAGGAACTATTGAAAC	ATTGCGAGAGATCAGAAATATTCTCCGCTTTGTAAA
GTTTCCATACCTCTAAGGAACTATTGAAAC	TAAAGGATATGAGATACTCACTACTGAGAAATCATT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GTGTATTGTGCTTTTGTTCAGAATGCTTTCGAGTCTGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	AAGAACCCCGCAGACAAAGGAAACGTCACTCCCGA
GTTTCCATACCTCTAAGGAACTATTGAAAC	CTGGCGACATCCTACACGCTACAAGAAGATTCTCTTCTACGC
GTTTCCATACCTCTAAGGAACTATTGAAAC	CAGGCACGGTCGCGTACTGGACGAACTCGTTAGTGGACGAGAT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GAATAATCTCTTGAATTTTCCATAATCGTCCCTCCCCT
GTTTCCATACCTCTAAGGAACTATTGAAAC	TGGAGGAGGGGACGACAAATTTCTACCAAAATCCACTATT
GTTTCCATACCTCTAAGGAACTATTGAAAC	CAGCAAGAAACCTCGGTGTCTCGCTGAGAGAAGCAA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CTTCACCGCATCAATTATTTCGTCTGTTTTATCTTTT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GATATACGTAGGTAACGTTGCATCAAACGACCTCAT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CAAGGTGAAAAACCGAAGCCAAACCTCCCTTTCGAAA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CAACTGAAGCATCAAAAATTATGTCCAATGCTCCGG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CGATATCCGCCTCCTGAAGCCATTTGTAGAGTTCCC
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TGTAAAAGATATTGGAAAAATGTACCAAGTGTACTCAAC
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TTCGCTCTCCCGCTTTGACTACCATTCGCAGAGGGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CACTAACCACCGCAGGTATTCGCTCTGCGGAAGCGG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GGCGATGAGATCCTCGTCTGCAAGTTGAAGTACCGCT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GAAACTTGCCGAGAAAATGGCTGAATCTAAGAATG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GGAGGTGGAATTATGTTCAGAGTGTATGGCAAAAACG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GGGGCGAATGGCACCGCATAAAAGAAGTGTATATGTA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	ATTCCAAGTAGAAGTGGATGATCCTGAAATTCTGCAGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GCGGAGCCGTGATAAAAGCAGCTGTTGATCCTTGCG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	ACACACAAGACTTGACACGACGTGGTAGGATAGGG
GTTTCCATACCTCTAAGGAAGTATTGAAAC

>NZ_CP003408|3|3|599826-601733|CRT
ATTTCCATGCCTCTAAGGAAGTATTGAAAC	TTAAGATGTCTATACCGGGCATTCTACAAAACAGC
GTTTCCATACCTCTAAGGAATTATTGAAAC	GTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GTACATGGGTTGCTGCGGCAATGAATCCAGAAACCGA
GTTTCCATACCTCTAAGGAACTATTGAAAC	GATGATGATGTAATTGTTCTTTCAGGTAGTAGATACGA
GTTTCCATACCTCTAAGGAACTATTGAAAC	ATTGCGAGAGATCAGAAATATTCTCCGCTTTGTAAA
GTTTCCATACCTCTAAGGAACTATTGAAAC	TAAAGGATATGAGATACTCACTACTGAGAAATCATT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GTGTATTGTGCTTTTGTTCAGAATGCTTTCGAGTCTGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	AAGAACCCCGCAGACAAAGGAAACGTCACTCCCGA
GTTTCCATACCTCTAAGGAACTATTGAAAC	CTGGCGACATCCTACACGCTACAAGAAGATTCTCTTCTACGC
GTTTCCATACCTCTAAGGAACTATTGAAAC	CAGGCACGGTCGCGTACTGGACGAACTCGTTAGTGGACGAGAT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GAATAATCTCTTGAATTTTCCATAATCGTCCCTCCCCT
GTTTCCATACCTCTAAGGAACTATTGAAAC	TGGAGGAGGGGACGACAAATTTCTACCAAAATCCACTATT
GTTTCCATACCTCTAAGGAACTATTGAAAC	CAGCAAGAAACCTCGGTGTCTCGCTGAGAGAAGCAA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CTTCACCGCATCAATTATTTCGTCTGTTTTATCTTTT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GATATACGTAGGTAACGTTGCATCAAACGACCTCAT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CAAGGTGAAAAACCGAAGCCAAACCTCCCTTTCGAAA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CAACTGAAGCATCAAAAATTATGTCCAATGCTCCGG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CGATATCCGCCTCCTGAAGCCATTTGTAGAGTTCCC
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TGTAAAAGATATTGGAAAAATGTACCAAGTGTACTCAAC
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TTCGCTCTCCCGCTTTGACTACCATTCGCAGAGGGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CACTAACCACCGCAGGTATTCGCTCTGCGGAAGCGG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GGCGATGAGATCCTCGTCTGCAAGTTGAAGTACCGCT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GAAACTTGCCGAGAAAATGGCTGAATCTAAGAATG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GGAGGTGGAATTATGTTCAGAGTGTATGGCAAAAACG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GGGGCGAATGGCACCGCATAAAAGAAGTGTATATGTA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	ATTCCAAGTAGAAGTGGATGATCCTGAAATTCTGCAGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GCGGAGCCGTGATAAAAGCAGCTGTTGATCCTTGCG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	ACACACAAGACTTGACACGACGTGGTAGGATAGGG
GTTTCCATACCTCTAAGGAAGTATTGAAAC

>NZ_CP003408|3|3|599891-601733|PILER-CR
GTTTCCATACCTCTAAGGAATTATTGAAAC	GTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GTACATGGGTTGCTGCGGCAATGAATCCAGAAACCGA
GTTTCCATACCTCTAAGGAACTATTGAAAC	GATGATGATGTAATTGTTCTTTCAGGTAGTAGATACGA
GTTTCCATACCTCTAAGGAACTATTGAAAC	ATTGCGAGAGATCAGAAATATTCTCCGCTTTGTAAA
GTTTCCATACCTCTAAGGAACTATTGAAAC	TAAAGGATATGAGATACTCACTACTGAGAAATCATT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GTGTATTGTGCTTTTGTTCAGAATGCTTTCGAGTCTGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	AAGAACCCCGCAGACAAAGGAAACGTCACTCCCGA
GTTTCCATACCTCTAAGGAACTATTGAAAC	CTGGCGACATCCTACACGCTACAAGAAGATTCTCTTCTACGC
GTTTCCATACCTCTAAGGAACTATTGAAAC	CAGGCACGGTCGCGTACTGGACGAACTCGTTAGTGGACGAGAT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GAATAATCTCTTGAATTTTCCATAATCGTCCCTCCCCT
GTTTCCATACCTCTAAGGAACTATTGAAAC	TGGAGGAGGGGACGACAAATTTCTACCAAAATCCACTATT
GTTTCCATACCTCTAAGGAACTATTGAAAC	CAGCAAGAAACCTCGGTGTCTCGCTGAGAGAAGCAA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CTTCACCGCATCAATTATTTCGTCTGTTTTATCTTTT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GATATACGTAGGTAACGTTGCATCAAACGACCTCAT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CAAGGTGAAAAACCGAAGCCAAACCTCCCTTTCGAAA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CAACTGAAGCATCAAAAATTATGTCCAATGCTCCGG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CGATATCCGCCTCCTGAAGCCATTTGTAGAGTTCCC
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TGTAAAAGATATTGGAAAAATGTACCAAGTGTACTCAAC
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TTCGCTCTCCCGCTTTGACTACCATTCGCAGAGGGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CACTAACCACCGCAGGTATTCGCTCTGCGGAAGCGG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GGCGATGAGATCCTCGTCTGCAAGTTGAAGTACCGCT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GAAACTTGCCGAGAAAATGGCTGAATCTAAGAATG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GGAGGTGGAATTATGTTCAGAGTGTATGGCAAAAACG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GGGGCGAATGGCACCGCATAAAAGAAGTGTATATGTA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	ATTCCAAGTAGAAGTGGATGATCCTGAAATTCTGCAGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GCGGAGCCGTGATAAAAGCAGCTGTTGATCCTTGCG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	ACACACAAGACTTGACACGACGTGGTAGGATAGGG
GTTTCCATACCTCTAAGGAAGTATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003408.1\|WP_004083122.1\|609986_611228_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP003408.1\|WP_008193562.1\|591922_593131_-\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341465
NZ_CP003408.1\|WP_004083158.1\|591634_591841_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003408.1\|WP_008193575.1\|597850_598555_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP003408.1\|WP_004083160.1\|589639_590710_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP003408.1\|WP_008193578.1\|598541_599756_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|182528
NZ_CP003408.1\|WP_008193583.1\|602356_602959_+\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|280058
NZ_CP003408.1\|WP_081501924.1\|590723_591638_-\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NZ_CP003408.1\|WP_008193601.1\|606693_607959_-\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
NZ_CP003408.1\|WP_008193596.1\|604808_605939_-\|chorismate-synthase	unknown	unknown	gnl\|CDD\|272865
NZ_CP003408.1\|WP_008193599.1\|605935_606697_-\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|223247
NZ_CP003408.1\|WP_008193569.1\|596846_597854_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP003408.1\|WP_004083125.1\|608713_609730_-\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|181535
NZ_CP003408.1\|WP_004083135.1\|603382_604861_-\|bifunctional-shikimate-kinase-AroK/3-dehydroquinate-synthase-AroB	unknown	unknown	gnl\|CDD\|172457
NZ_CP003408.1\|WP_008193603.1\|607955_608717_-\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|223364
NZ_CP003408.1\|WP_008193563.1\|593212_594418_-\|threonine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236182
NZ_CP003408.1\|WP_008193588.1\|602951_603386_-\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|235443
NZ_CP003408.1\|WP_008193568.1\|595587_596850_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|367035
NZ_CP003408.1\|WP_004083107.1\|611423_611927_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003408.1\|WP_008193565.1\|594585_595572_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455

Protein	Function_ID	Function_description	E-value
NZ_CP003408.1\|WP_004083122.1\|609986_611228_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.68098e-72
NZ_CP003408.1\|WP_008193562.1\|591922_593131_-\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341465	cd08186, Fe-ADH-like, Iron-containing alcohol dehydrogenase. This family contains iron-containing alcohol dehydrogenase (ADH) which catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols, preferentially from C2 to C8, but is also active towards methanol and glycerol, and is stereospecific for monoterpenes. It has been suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.	0
NZ_CP003408.1\|WP_008193583.1\|602356_602959_+\|LysE-family-transporter	gnl\|CDD\|280058	pfam01810, LysE, LysE type translocator. This family consists of various hypothetical proteins and an l-lysine exporter LysE from Corynebacterium glutamicum which is proposed to be the first of a novel family of translocators. LysE exports l-lysine from the cell into the surrounding medium and is predicted to span the membrane six times. The physiological function of the exporter is to excrete excess l-Lysine as a result of natural flux imbalances or peptide hydrolysis; and also after artificial deregulation of l-Lysine biosynthesis as used by the biotechnology. industry for the production of l-lysine.	5.81829e-38
NZ_CP003408.1\|WP_008193575.1\|597850_598555_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.69942e-125
NZ_CP003408.1\|WP_004083160.1\|589639_590710_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	2.80206e-21
NZ_CP003408.1\|WP_008193578.1\|598541_599756_+\|FtsX-like-permease-family-protein	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	4.76182e-52
NZ_CP003408.1\|WP_081501924.1\|590723_591638_-\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	1.37623e-92
NZ_CP003408.1\|WP_008193601.1\|606693_607959_-\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0
NZ_CP003408.1\|WP_008193596.1\|604808_605939_-\|chorismate-synthase	gnl\|CDD\|272865	TIGR00033, Chorismate_synthase, chorismate synthase. Homotetramer (noted in E.coli) suggests reason for good conservation. [Amino acid biosynthesis, Aromatic amino acid family].	6.9543e-171
NZ_CP003408.1\|WP_008193599.1\|605935_606697_-\|shikimate-dehydrogenase	gnl\|CDD\|223247	COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism].	5.29991e-84
NZ_CP003408.1\|WP_008193569.1\|596846_597854_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	4.14784e-34
NZ_CP003408.1\|WP_004083125.1\|608713_609730_-\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|181535	PRK08673, PRK08673, 3-deoxy-7-phosphoheptulonate synthase; Reviewed.	0
NZ_CP003408.1\|WP_004083135.1\|603382_604861_-\|bifunctional-shikimate-kinase-AroK/3-dehydroquinate-synthase-AroB	gnl\|CDD\|172457	PRK13951, PRK13951, bifunctional shikimate kinase AroK/3-dehydroquinate synthase AroB.	0
NZ_CP003408.1\|WP_008193603.1\|607955_608717_-\|prephenate-dehydrogenase	gnl\|CDD\|223364	COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and metabolism].	1.26186e-63
NZ_CP003408.1\|WP_008193563.1\|593212_594418_-\|threonine-ammonia-lyase	gnl\|CDD\|236182	PRK08198, PRK08198, threonine dehydratase; Provisional.	0
NZ_CP003408.1\|WP_008193588.1\|602951_603386_-\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|235443	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase.	4.91863e-87
NZ_CP003408.1\|WP_008193568.1\|595587_596850_+\|TolC-family-protein	gnl\|CDD\|367035	pfam02321, OEP, Outer membrane efflux protein. The OEP family (Outer membrane efflux protein) form trimeric channels that allow export of a variety of substrates in Gram negative bacteria. Each member of this family is composed of two repeats. The trimeric channel is composed of a 12 stranded all beta sheet barrel that spans the outer membrane, and a long all helical barrel that spans the periplasm.	3.9292e-12
NZ_CP003408.1\|WP_008193565.1\|594585_595572_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	6.25624e-13

>NZ_CP003408.1|WP_008193578.1|598541_599756_+|FtsX-like-permease-family-protein
MEILKEVLRSLLANKMRTFLSMLGIVIGVTAVIMVMSLGAGMKESVTERLTSLGSNIIMITPGFTGGRGGTIAQSVESLEEDDVEDILKMCPSVDKAIGLVNGSFLVQYRETNTRSNVYSAPADIFHILNLKVSSGRTFSQEDNTANVAIIGQEVAYNLFGNENPLGKKIYLVQGNRKLVFEIIGIFERTGSILMFNPDNMILIPYETGKFRVFQTHGKVSMILATSKSADVAQRAVMEIDHLLYTKFHEEESYYNIISQQAILNVVSESVSIINLVLVAIAAVSLIVGGIGIMNIMLVSVVERTREIGIKMAIGASRLRILLEFLVESVVITFVAGAIGVALGILGSNTIVNTFGSQYGLKAVVDPLSVIVAFGVSASVGLFFGFYPAYRASRLSPIEALRYE
>NZ_CP003408.1|WP_008193575.1|597850_598555_+|ABC-transporter-ATP-binding-protein
MKKVMELVDVWKIYDLGEVKVEALRGVSFEVFEGEYVIIIGPSGSGKSTLLHILGCLDRPTKGKVLIEGEEVSRMGDRRLAQVRNRKIGFVFQSYNLLPRLTALENVELPMIYAGVPAKERKRRAKELLELVGLGDRLHHRPNQLSGGQQQRVAIARALANDPVFILADEPTGNLDTKTGEEILELFRKLHEMGKTLVVVTHNLEMVDEGTCIVRIRDGKIEGVERRGVVYGDT
>NZ_CP003408.1|WP_008193569.1|596846_597854_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKKWITLLIIAVLVVLVAVVIFLNRASAQTVSEKDATSTQTPVYLTYTVTKENETVEIVGQVTADTKKVTSKVSGDVLEIYVEEGDVVQVGQKIAKIDDTDYQISYLSALNSYKTSPTEINRLNLEKAKENLENTTVVSPVNGVVQSVNVDVGDSVSVGTSIVTIVETDTLRVEGSISEYDLKNVKEGMKAVFTFEQLGLTLTGKVKRISPVAETSGGVTVIPVEFSFDQIPPSLVIPGLTCDVEIIIKEATSSFFVPKEAVSQDQNGYYVMKQTPQGPQKVYVEVGEELNDKIEIKKGVSEGDVLLLIPSQQEIQRLRTRQGLPMFGPGGGRAR
>NZ_CP003408.1|WP_008193568.1|595587_596850_+|TolC-family-protein
MKRFFLVFLLVPVFLVGNVFDLFEENLKNSSGYWSSVEKFKEAQLNYKRYTNFWNPEISVSLGKTGITITEDGISDFSISPIVNFVNIYGFELGLSFPISVNTDDWSFNFEGTQLSVSRNLKTEYTVDKLKTEANYLSSKYSLKSTKNSIFIQTVQDIFDWYYYTKKIEILSQRLQVLNEKLSKAKDDDEKKALEKQILSTEQTLRSAEYSLQTIQTKNIDEEVYQKTRKFLEGVTLPATTLEYREDLKALELQKKAEEIEKKTWFLPYLPDLTFSFNYDFEENEWSIGIGFQMTLWDFGERKLEAEKRKSQLVSLEYQEKVRNIENSLSQELVNIANLESQLRQKEIELEDLEESSKTNDQLFNKGFLSEEDYALSKLDYVEGTLEKENLENSLILEKLKYISILGYDLEKFLKEGDQN
>NZ_CP003408.1|WP_008193565.1|594585_595572_+|TolC-family-protein
MKNLFVVLLSLVSVLSFSVSLNDVLQTALASSTDYQIAQINLESATMDYEKAKLEATNKRSELSAELSYYNNLQSYRNSLKSAYQDVLGRIFNLLTADLSYEIAQLNFENAQEDYKTSQELFKKNLISENDLKDSELTLEEASNNLLSAQKDLEEAQKDYEEIFSVEVSEIELPLIDYQNLVGEDEYLDNLSSVKIAELNMKIYEYDLNNLSAYASKYEQKKAELNYKKSKMNYDEALKEAKDSYKSTLDSLEIAFLNLKVLKEKIELNENILKDYQERYEKGLISKKELNTQKINLLNTKKNYFNSLRSYYTSIVNFLIDAGKEVSF
>NZ_CP003408.1|WP_008193563.1|593212_594418_-|threonine-ammonia-lyase
MITLEDIKEAQRTLKNVVHRTALAYSSVLSEVTGGEIYLKMENLQKTGSFKIRGAYNKIAHLSEEERKRGVVAASAGNHAQGVALAAQIFGIPATIVMPKYAPLSKITKTRNLGAQVILEGNIFDEAYEAALRIQEKTGAVFVHPFNDPHVIAGQGTIGLEIMEDLPDVEVVVVPVGGGGLISGVSVAIKSMNPEVKVIGVQTENMPSMIASLRRGRAERVEGKPTLADGIAVKKPGDLTFELVKKYVDEMVTVNEEEIADAILFLLEQAKVVAEGAGAVGVAAVLNKLDVKGKKVAIVISGGNIDVNMIDRIINKGLVKSGRKVFIETFVMDRPGTLKELLGIVAELGANVLSVFHNRSAKEVPIGFAKIELELETVDEKHVEEIERVLIAKGYEVRIVV
>NZ_CP003408.1|WP_008193562.1|591922_593131_-|iron-containing-alcohol-dehydrogenase
MWSKEINIKNVIEIRTKTTCYFGAGALAKIEDILDFLKERGIKSVVVVSDKVAYKVTGAWDKVKPALEKRGIEYVVYDDVTPNPTTEQINEATKKALEINAQAVIGIGGGSPIDTAKSVAILLEYPEKTAEELYEQKFIPEKAKPIIAINTTHGTGTEVDRFAVASILEKEYKPPIAYDCIYPTFSIDDPELTKSLPEKQSIYTSLDALNHITEAATTSLGNPFSINLARNTVELISEYLPEVLKKPDNLEARYFLMYASAIAGISFDNGMLHLTHALEHPLSAIKPDLPHGLGLAMLLPAVFKYTYKAKPQILAYVYQPIIPDLKGRPNEAEEAASKLEQWIFNLGVKEKLADVGFSEKDIPKLVRLAFETPALDLLLNLAPMKVDENLVEAIYKESLKPY
>NZ_CP003408.1|WP_004083158.1|591634_591841_-|hypothetical-protein
MRFVSDFLFFAGFGLLFIAIVFFDLGTRAIKKKQNQKKKFYDKKGWQFLSVSLGAFAVSILLALIGRG
>NZ_CP003408.1|WP_081501924.1|590723_591638_-|diacylglycerol-kinase-family-lipid-kinase
MNMVFLIYNPAAGGGRAGKIWDRVEDLLKKHGIDHKVAFTERPGHAMEISKKAFKEGYRRIAAFGGDGTVNEVVNGIFLNGYDLREVVFGWIPFGSGKDWARTIGVSLEIEEAIKTLKDGKEFVQDLGVGEYEKASGEIEKRAFVNVAGLFFDGFVTYRTNLLKRKNRVSYFSRIFSSIIEYDPPTARIQIDEKVWEKRVFSMNVGICKYNGGGMNQLPHAVPDDGLLAVTVINDIGKLRILANLHRVFNGKLLEHPRVEGYQAKKVVVEFQRDEPVEFDGESFWAKKIFFSIIPGVIRVLVKK
>NZ_CP003408.1|WP_004083160.1|589639_590710_+|glycosyltransferase-family-4-protein
MKIGFLSRWGATCGVGMHAEILAREFIRMGHEVVVFAPTEESASKEVKYYKRTEAQDPEFVKREIYTEVDNVTEEGWVKEEEILKENLDLLIIETFWRVPVKPLTRLIEKLKIPVISVFHEANIFKAREVVKLPCDKIVVFDRRFYDEILEFYEIPREKVEVISYPVMKPYDAEPERPVSEDKFLFFSFGRQPVEEYCDFLNALKKLRKRFDNVHYWIIRSDGRVDYEAEWITQWQKRPTVEKLYSYLKGSNVHLLPKGNTPNVVVSSTLYQIIASETPIVIRDSRFVETIETDVYGFGPIVKYRNIHDLVHKLELLMLDRELVEDIKKEVRVFVEKYGGDKIAQEFLDLAKTITK
>NZ_CP003408.1|WP_008193583.1|602356_602959_+|LysE-family-transporter
MISIFFGSFLVGLSGAVAPGPLMMIAISQSAKGWKNSIKLISGHVVLEAFLVLLLVLGFQWVLKSPLVTKVIGLLGGSFLAFMGISQLTAIKGEISQVEKNDLKIPLPITGALVSLSNPYFLLWWMSVGSAFLVKAQTSFLAGVTAFYFGHILSDILWYSLIGVFGNTILKSSRIYKIVMAVTGLFLIGFGLFFVLDSLR
>NZ_CP003408.1|WP_008193588.1|602951_603386_-|type-II-3-dehydroquinate-dehydratase
MKVLVVNGPNLNMLGKRDKNIYGNFSHEDLVKMIEDWGRKNDVEVEVFQSNHEGEILDRLHRLDFDGLVINPGAFTHYSYAIRDALEIVKVPKVEVHISNVHRREEFRRRSVTAEVCDGQISGLGVYGYLLALEYIKKKLEELT
>NZ_CP003408.1|WP_004083135.1|603382_604861_-|bifunctional-shikimate-kinase-AroK/3-dehydroquinate-synthase-AroB
MRIFLVGMMGSGKSTIGKRISEVLDLQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLKELVERDNVVVATGGGVVVDPENRELLKKEKTLFLYAPPEVLMERVTTENRPLLSEGKERIREIWEKRKQFYAEFRRIDTSRLNEWETTALVVLEALDEKEISTIEKPHLVKIILGGFKRVRNEELVFTTERVEKIYGRYLPENRLLFPDGEEVKTLEHVSRAYYELIRMDFPRGKTIAGVGGGALTDFTGFVASTFKRGVGLSFYPTTLLAQVDASVGGKNAIDFAGVKNVVGTFRMPDYVIIDPTVTLSMDEGRFEEGVVEAFKMTILSGRGVELFDEPEKIEKRNLRVLSEMVKISVEEKARIVMEDPYDMGLRHALNLGHTLGHVYEMLEGVPHGIAVAWGIEKETMYLYRKGIVPKETMRWIVEKVKQIVPIPVPSVDVEKARNLILNDKKILKGSRVRLPYVKEIGKIEFLEVDPLELLEVVD
>NZ_CP003408.1|WP_008193596.1|604808_605939_-|chorismate-synthase
MKLTIAGDSHGKYMIAVLEGIPAGLKIDEEIIRRELFRRRNCYGRGKRMSIEEDAFEIVSGVWRGITTGAPLTILVPNKAGNPVKDVRSVPRPGHIDYAAFVKYKLPDLNVYVERSSARWTVALTAAGALLKSLLREFNIDVLGFVTRLGNVEAKNIPDDFEELRRKRDESAVFCPDPEATEGMISEIDRAKEEGNTLGGKVRIIARGVPAGIGSYSDLFKKLDSKIGSLFFAIPAVKGVVIGSEEMWYGFDYLDEFELEDGKIKRKTNNLGGIEGGITNGEDVWVNVSVKPIPTTGKPLKSVDLRTMEPAKTPYVRSDVTAVPPASVVCEAALAVVISDALLEHLGDGNIDDLKRRFENENLPRWNDGFWKEHYR
>NZ_CP003408.1|WP_008193599.1|605935_606697_-|shikimate-dehydrogenase
MKFCIIGYPVKHSISPRLYNEYFKRAGISHSYGMEEIPPESFDTEIRRILEEYDGFNATIPHKERVMQYVEPSEDAQRIKAVNCVFRGKGYNTDWVGVVKSLEGVEVKEPVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVLKKAKSLFNTTSVGMKGEKLPVSEASLKGLSLVYDVVYFETPLVSDAKRLGVEHVVKGNLMFYYQAMENLKIWGIYDERSFKEVFGEVLR
>NZ_CP003408.1|WP_008193601.1|606693_607959_-|3-phosphoshikimate-1-carboxyvinyltransferase
MKVLPAKKVEGALSVPPDKSITHRALILSALAETESTLYNLLRCLDTERTHDILEKLGTRFEGNWEKMKVFPKPFAEPIEPLFCGNSGTTTRLMSGVLASYEMFTVLYGDPSLSRRPMRRVIEPLEMMGARFMARQNNYLPMAIKGNHLSGISYKTPVASAQVKSAVLLAGLRASGRTIVIEPAKSRDHTERMLKNLGVPVEVEGTRVVLEPATFRGFTMKVPGDISSAAFFVVLGAIHPNARITVTDVGLNPTRTGLLEVMKLMGANLEWEITEENLEPIGTVRVETSPNLKGVVVPEHLIPLMIDELPLVALLGVFAEGETVVRNAEELRKKESDRIRVLVENFKRLGVEIEEFKDGFKIVGKQSIKGGSVDPEGDHRMAMLFSIAGLVSEEGVEVKDHECVAVSFPNFYELLERVVIS
>NZ_CP003408.1|WP_008193603.1|607955_608717_-|prephenate-dehydrogenase
MKISVLGAGCIGGSIALKLKEKHHVTAFDRDEETMKALEENGIETVSKESDLYDTDLLVLALPMSVEERFLKETDFSGKILDVASVKTPFMEIARERELNFTGGHPMAGNERKGKSGWDREMFGGKIFFLCSLDGKEDGMIENIVKDLGARPLWIDYRIHDEIVAAVSHVQYLISLSARYVGKPFEEYAGPGYLSNTRLSKQNMEMALDMIRYNKENILKYLENARNFLNILYHLIEKEDFENLKKTIREVIS
>NZ_CP003408.1|WP_004083125.1|608713_609730_-|3-deoxy-7-phosphoheptulonate-synthase
MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVN
>NZ_CP003408.1|WP_004083122.1|609986_611228_-|MFS-transporter
MNEILHWKRNFFLLALGRFVSILGSSVQAVAIPLFVLDLTHSGSAVALMTVAYMVPRILFTPIAGIVGDRGDRKFLMVSMDFLRGFLICFLALLAFRNSITLPVLYVSQIAMAIMDNLFDIPTGAMFPDIVPQDFLMRANSIMGMVRIFPQILGPALGGVIYGFYGIAIVFLVNGVSFVLSAISEIFIVYSRKVEKKPAKFSQILEDLKEGFLFIWNHELIRTILIFALFLNLLISPLFMVVYPYTIREVMKFSAQEFGFLETSFTLGALLGNFLIASYLSKKNMWKAMKISIFLFELPIVFLGFLVMPDFSLNRLVLFSLFFITFLIMGFLNPIINVPLDTAFQKMTPSHIRARAFSFLILVANGVTPLGSVLYGYLVDRVPVHFLYYVVGALSFLVAVLLLVALRGKELPT
>NZ_CP003408.1|WP_004083107.1|611423_611927_-|hypothetical-protein
MSDEIRKILEAVARGEISPEEGEMLIKAMQEKEREENGSKDDFSEREGDYILDEDEMVEEDLVLSKKKAIIRGKIKGDLALINCETFFSGEVEGDLAVIGGKIEFGGGTVKGDLALIDAKESGKTPVVEGDIARISNFFVGGILKMISPFISNISVSSRKKKVEGEE

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Crispr_ID: NZ_CP003408_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003408_4

978646-978734

Orphan

III-A

Consensus_repeat	Method
TACATCTAAGGAAGTATTGAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP003408_4

>merge|NZ_CP003408|4|978646-978734|CRISPRCasFinder
TACATCTAAGGAAGTATTGAAACTCGCAGAGGAACGCAGGATACCCTACTCCGAAGATAGTTTCCATACCTCTAAGGAAGTATTGAAAC

>NZ_CP003408|4|4|978646-978734|CRISPRCasFinder
TACATCTAAGGAAGTATTGAAAC	TCGCAGAGGAACGCAGGATACCCTACTCCGAAGATAGTTTCCA
TACCTCTAAGGAAGTATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003408.1\|WP_038050925.1\|986249_987416_+\|type-III-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|143482
NZ_CP003408.1\|WP_008194257.1\|985817_986018_-\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP003408.1\|WP_008194246.1\|976637_978590_+\|IGHMBP2-family-helicase	unknown	unknown	gnl\|CDD\|273041
NZ_CP003408.1\|WP_008194241.1\|974283_975600_+\|transglutaminase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376628
NZ_CP003408.1\|WP_008194237.1\|973111_973540_+\|DUF2202-domain-containing-protein	unknown	unknown	gnl\|CDD\|224548
NZ_CP003408.1\|WP_008194260.1\|987417_987816_-\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|376651
NZ_CP003408.1\|WP_008194231.1\|969436_970198_-\|FprA-family-A-type-flavoprotein	unknown	unknown	gnl\|CDD\|223503
NZ_CP003408.1\|WP_081501955.1\|984326_985739_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP003408.1\|WP_008194235.1\|971291_973115_+\|NADH-quinone-oxidoreductase-subunit-NuoF	unknown	unknown	gnl\|CDD\|224806
NZ_CP003408.1\|WP_008194252.1\|982794_983544_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|224769
NZ_CP003408.1\|WP_008194244.1\|975603_976641_+\|dipeptide-epimerase	unknown	unknown	gnl\|CDD\|239435
NZ_CP003408.1\|WP_008194248.1\|978934_981037_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003408.1\|WP_008194262.1\|987832_988108_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223920
NZ_CP003408.1\|WP_008194253.1\|983527_984292_-\|metallophosphoesterase-family-protein	unknown	unknown	gnl\|CDD\|378975
NZ_CP003408.1\|WP_008194229.1\|968590_969427_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP003408.1\|WP_008194250.1\|981194_982721_-\|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase	unknown	unknown	gnl\|CDD\|236566
NZ_CP003408.1\|WP_010865026.1\|970359_970890_+\|NADH-dehydrogenase	unknown	unknown	gnl\|CDD\|224817
NZ_CP003408.1\|WP_010865025.1\|970886_971273_+\|NADP-oxidoreductase	unknown	unknown	gnl\|CDD\|225945
NZ_CP003408.1\|WP_008194239.1\|973575_974250_-\|cyclase-family-protein	unknown	unknown	gnl\|CDD\|224790
NZ_CP003408.1\|WP_008194265.1\|988112_988928_-\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|131023

Protein	Function_ID	Function_description	E-value
NZ_CP003408.1\|WP_038050925.1\|986249_987416_+\|type-III-PLP-dependent-enzyme	gnl\|CDD\|143482	cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this subfamily are proteins with homology to ODC but do not possess any catalytic activity, the Antizyme inhibitor (AZI) and ODC-paralogue (ODC-p). AZI binds to the regulatory protein Antizyme with a higher affinity than ODC and prevents ODC degradation. ODC-p is a novel ODC-like protein, present only in mammals, that is specifically exressed in the brain and testes. ODC-p may function as a tissue-specific antizyme inhibitory protein.	2.95233e-172
NZ_CP003408.1\|WP_008194257.1\|985817_986018_-\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.75722e-33
NZ_CP003408.1\|WP_008194246.1\|976637_978590_+\|IGHMBP2-family-helicase	gnl\|CDD\|273041	TIGR00376, DNA-binding_protein_SMUBP-2, DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP003408.1\|WP_008194241.1\|974283_975600_+\|transglutaminase-domain-containing-protein	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	1.86842e-24
NZ_CP003408.1\|WP_008194237.1\|973111_973540_+\|DUF2202-domain-containing-protein	gnl\|CDD\|224548	COG1633, COG1633, Uncharacterized conserved protein [Function unknown].	1.09587e-24
NZ_CP003408.1\|WP_008194260.1\|987417_987816_-\|YjbQ-family-protein	gnl\|CDD\|376651	pfam01894, UPF0047, Uncharacterized protein family UPF0047. This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important.	2.34559e-72
NZ_CP003408.1\|WP_008194231.1\|969436_970198_-\|FprA-family-A-type-flavoprotein	gnl\|CDD\|223503	COG0426, FpaA, Uncharacterized flavoproteins [Energy production and conversion].	1.0438e-78
NZ_CP003408.1\|WP_081501955.1\|984326_985739_-\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP003408.1\|WP_008194235.1\|971291_973115_+\|NADH-quinone-oxidoreductase-subunit-NuoF	gnl\|CDD\|224806	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion].	0
NZ_CP003408.1\|WP_008194252.1\|982794_983544_+\|radical-SAM-protein	gnl\|CDD\|224769	COG1856, COG1856, Uncharacterized homolog of biotin synthetase [Function unknown].	7.20112e-120
NZ_CP003408.1\|WP_008194244.1\|975603_976641_+\|dipeptide-epimerase	gnl\|CDD\|239435	cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	5.60431e-125
NZ_CP003408.1\|WP_008194250.1\|981194_982721_-\|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase	gnl\|CDD\|236566	PRK09558, ushA, bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed.	0
NZ_CP003408.1\|WP_008194262.1\|987832_988108_-\|hypothetical-protein	gnl\|CDD\|223920	COG0851, MinE, Septum formation topological specificity factor [Cell division and chromosome partitioning].	0.000365856
NZ_CP003408.1\|WP_008194253.1\|983527_984292_-\|metallophosphoesterase-family-protein	gnl\|CDD\|378975	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain. Members of this family are part of the Calcineurin-like phosphoesterase superfamily.	4.99475e-27
NZ_CP003408.1\|WP_008194229.1\|968590_969427_-\|chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.57943e-50
NZ_CP003408.1\|WP_010865026.1\|970359_970890_+\|NADH-dehydrogenase	gnl\|CDD\|224817	COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion].	1.07429e-75
NZ_CP003408.1\|WP_010865025.1\|970886_971273_+\|NADP-oxidoreductase	gnl\|CDD\|225945	COG3411, COG3411, Ferredoxin [Energy production and conversion].	2.52658e-22
NZ_CP003408.1\|WP_008194239.1\|973575_974250_-\|cyclase-family-protein	gnl\|CDD\|224790	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism].	3.19229e-72
NZ_CP003408.1\|WP_008194265.1\|988112_988928_-\|septum-site-determining-protein-MinD	gnl\|CDD\|131023	TIGR01968, Septum_site-determining_protein_MinD, septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. [Cellular processes, Cell division].	2.93811e-149

>NZ_CP003408.1|WP_008194246.1|976637_978590_+|IGHMBP2-family-helicase
MTVQQFIKKLVRLVELERNAEINAMFDEMKRLSGEEREKKGRAVLGLTGKFIGEELGYFLVRFGRRKKIDTEIGVGDLVLISKGNPLKSDYTGTVVEKGERFITVAVDRLPSWKLKNVRIDLFASDITFRRQIENLMTLSPEGKKALEFLLGRRKPEESFEEEFTPFDEGLNESQREAVSLALGSSDFFLIHGPFGTGKTRTLVEYVRQEAARGRKILVTAESNLAVDNLVERLWGKVSLVRIGHPSRVSSHLKESTLAHQIETSSEYEKVKKMKEELAKLIEKRDSFTKPSPQWRRGLSDKKILEYAEKNWSARGVSKEKIKEMAEWIKLNNQIQDIRELIERKEEIIANRIVREAQVVLSTNSSAALEIISGIVFDVVVVDEASQATIPSILIPISKGKKFVLAGDHKQLPPTILSEDAKDLSRTLFEELINRYPEKSSLLDTQYRMNELLMEFPSEEFYDGKLKAAEEVKNITLFDLGVEIPNFGKFWDVVLSPKNVLVFIDTKNRPDRFERQRKDSPSRENPLEAQIVKEVVEKLLSMGVKEDWIGIITPYDDQVNLIRELIEAKVEVHSVDGFQGREKEVIIISFVRSNKNGEIGFLEDLRRLNVSLTRAKRKLIATGDSSTLSVHPTYRRFVEFVKKKGTYVIF
>NZ_CP003408.1|WP_008194244.1|975603_976641_+|dipeptide-epimerase
MSRIVNVKLSLKRYEYEKPFHITGSISSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDARNYARIFEITDRLFGFPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTPKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSPFSVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVKIAESSGLKLMIGCMGESSLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKDQ
>NZ_CP003408.1|WP_008194241.1|974283_975600_+|transglutaminase-domain-containing-protein
MEFLIYSLPEEVLREEMLGNFSVALKLIDDFLKKDLPLLQRERLIYEKERIERLLEDYPFTEKEAMEKMREMFEGFSEEEFQHLMNEGVLDYIVVEGEKRFERRFFHNLAFVRSEYRERLRKDERIEKARKILHERLERLIKGEDPKRYRIRAKITLKLKETSSKHRVWLPFPKEGLQIESVKLLRTSHESYYISPNGVPQRTIYFEGEDSTFFVEFEYIVREWVNHVDPERVSEKVAGFEEFLKEEPPHIVFTPKLRWLTQTVVGSEVNPYLKAKRIYDWITLNVRYSYVKPYALYENIADFVANNLKGDCGFQALLFITMCRIAGVPARWQSGWYINSIFGSPHDWALFYVEPYGWLPADLSFGGARRDNESFRSFYFGNLDGFRMVANDGFMKDFDPKTRFVRSDPTDNQVGEAESEEKRLPFESTIEVISFEEV
>NZ_CP003408.1|WP_008194239.1|973575_974250_-|cyclase-family-protein
MFIELSYPIEEKMLTYPDNPPDYFEPMSRIEQGDAANTTMIHHFSHTGTHVDAPYHFCEEGWTLDQIPLEYFIFEKPLLVDREKKPMELFTIEDIEELDLNGVDLLMFRSGFAKLRRTDPVTYRYMFPGISKELARFLRESVPSLKAVMLDFLSADPIVLGEKENYPAHRWLLSKKFSSKRPIIIFEDVNLELVAGKKIKRVIALPLRFKGLDGGPVSVLAEVE
>NZ_CP003408.1|WP_008194237.1|973111_973540_+|DUF2202-domain-containing-protein
MIGPRDLLNIALRIESTGYSYYKNLAEKTEGETKALFERLAEQERDHSRKFKEILEKYEQDLNPSDEVLGYLEALAEISIFPKLEEIPPDDLREAVRRAIEVEKDSIVFYSEILSYVPEKEPVQAIIDEEKKHLRDLLRLEV
>NZ_CP003408.1|WP_008194235.1|971291_973115_+|NADH-quinone-oxidoreductase-subunit-NuoF
MPLTTNTILICAGGACISAGEKSVKDAFEEELRKYGLDEVVRVIETGCMGACTLGPIAVIYPEGVFYQKLTPDAAREIVEEHILKGRIVEKYLYKAPEGKPVPRVHEEVPFFKKQVRIVTRNLGVIDPTKIEEYIARDGYFALAKALQMKPEDVIREIKDSGLRGRGGAGFPTGLKWELAAKQKAEKKFVVCNADEGDPGAFMDRSVLEGDPHAVIEGMAIAAYAIGAQKGFVYVRAEYPLAIERLNIALNQAREYGFLGENIMGTDFSFDIEIRIGAGAFVCGEETALMASIEGERGQPRVKPPYPVEKGLWGYPTVINNVETLANVPWIIRNGAKEFRKYGTENSPGTKVFALAGKVKNTGLVEVPMGITLRELIYEIGGGIAGDKKLKAIQTGGPSGGCIPAEYVNTPVDFESLQKLGAIMGSGGMIVMDEDDCMVDVARFFLEFTVEESCGKCTPCREGTKKMLEILEKITSGEGTEEDIEELEKLAHVVKDTSLCGLGQTAPNPVLSTLRYFRDEYLAHVREKKCPSKKCKALISYVIDPEKCVGCTACARVCPVQCISGQVRQPHVIDQAECVRCGSCIEVCRFGAISKVTPALPVEEAVE
>NZ_CP003408.1|WP_010865025.1|970886_971273_+|NADP-oxidoreductase
MRMAKVKSLEELMKIKEQALKDLQLRGETGKRGKITVAMGTCGIAAGAKETLKAIVEALNEYNINDIAVVQSGCMGLCEVEPTVEVRLEGQEPVIYGRVTPENAKRIVKMHILEGRVVEDLVVKRGEA
>NZ_CP003408.1|WP_010865026.1|970359_970890_+|NADH-dehydrogenase
MKKFPINSDQEVAVLVKSKEELFKELENFIEENGYEGKKDALIQVLHKAQELFGYLPADVLEYISDKLDVPLSKVYGVVTFYNFFSTKPKGKHQIKVCLGTACYVKGADRIFERFLEELKVNPDEPTSDGMFSVHGVRCLGACSMAPVVMVDEDDFYGRVTPDMVPQIISKYKREG
>NZ_CP003408.1|WP_008194231.1|969436_970198_-|FprA-family-A-type-flavoprotein
MFENEILFDNGQHKFLFLGWEEKEEEIVQTNQYLILDGNEGILLDPGGAHVFPRVMSNVAEVVDLSSIKHIFYTHQDPDVTSGILLWLSICENAKIYISSLWVRFLPHFGIYDQKRIVPIPDKGTKIKLLSGNELEILPAHFLHSTGNFVLYDPVAKILFSGDIGAAVFEKGKRYRYVDDFERHLPLMEAFHKRYMSSNAACKKWVDMVSKKKIDMIAPQHGAVFRGESVKKFLEWFRNLKCGVDLIDNLYSL
>NZ_CP003408.1|WP_008194229.1|968590_969427_-|chemotaxis-protein
MREKEIVDKLTSAFFAENTIISFTSQLDEALTRKLRRMQRRIEEVKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGETLENIRSIEKLIQNIMRIARETNILALNATIEAARAGEAGKGFMIVANEVQNLSNETNEVTKQIVEKTREILGSSQRSLENLEFMANLFETVGKTLQNMIRFMENNVKLLQEVRNSLDTSKESLSEKSAEIDSATKVLEETAGGFTTINRVINSVITAQRKLKDLKI
>NZ_CP003408.1|WP_008194248.1|978934_981037_-|hypothetical-protein
MKKVLAYFVIPVFIFIFITACGIKINSSNAPGSAVPAAGGEVLLKADLSNIIGSKSLSKANSGTGYHVAYVNLTRSSNNWDFYLRGETKIMEHFELEGTSLELSLEKDCVYVIGIFKETDQGIELVGLIGDPTSDLSSLPISGDAVDVIDLGTLRLENGILAPEISFSDFVEKLGFVDEEAIKQFGEYDITLKNFLNPDINRNGIFDDEEGIYWKEETWYSFLIQDPSDLEDPKPPIHYHNNSTEGDSIIIWINYKGHELDYELYTLTPCATLISPDGEPISPHNSGEIVEISKRIYQYYFNPRRVEKNTPIESGEYTLILHDKTENKDITLKFNWGFLEPTNQLGGMVYPIPVFEAYSDGTMKDVKIKWCFYSSQDEKVEPASDEIVDLIYKLFYAYLAWDIEGAVWYDIDPEPMEKGDYYTYSFPYTCKQLRTPYYFESGRMNLYSIGNNVVSVEGPITHTELPYGYETLTEWHPITSPASLVGIWYNHGFIREEGEYTVLVFQPDGTLEAFENWRGMMWNVPLNPTVTYGWKLEGNNLYISKDGESWYEGTVEVAFADDGREFIRLNKDGTELVYTNFYSYIRSAGNDLEERGVPFLRLKKVVIDSVTDGEVKWHIEWDGNYKWGLVNFDVYIGTSPDNMRLVAFLYEDYESMKEGIFSIQSNLREYLEPGTYFIKIVANTWKEIVESNVYEFSISY
>NZ_CP003408.1|WP_008194250.1|981194_982721_-|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase
MRKFLVILLALLITALLLGVRLTILHVNDTHGHAWAFDEYRNPGIGGLAAIATIVEEVKREVESQGGYVIFLHAGDLNTGVPESDLQDAIPDIVGFNMIGLKAMAVGNHEFDNPREVLEKQMKFADFPFLSANIVKEDGEPFFNPYIVEDLGELKVAIIGFTTEETEILEPLYLEGLKFENALKVAQEMAPELKKQADVVIALAHLDWGEPKKEDITTTHQLAGVEGIDVVIAGHSHVLGSDVVDGKIIASAGEYGKYVGRLDLDIEDGKIVAWHWEAIPVNLKVYENEKYRYLGKPYLENRYVAKALEYFKKVGNEKLDTVIGETKIYLDGEREHVRSRSTNLANLIADAMRWKVGADIAFTNGGGIRASIKPGKITVRDILTVLPFGNTLYVLELTGEQIMKVLEYAATIPEGKGAFLQVSGLTWKSKDGKVVEVFVNGEPLDPEKKYKVVTNNYMAGGGDGYVMFKEWDGYDTGYLMSDAVIEYIQNVLKGKIEGYDDSQRYVRE
>NZ_CP003408.1|WP_008194252.1|982794_983544_+|radical-SAM-protein
MTVDPSHTIPVSVTETFCSLNCPHCGAHYLKHMISVNEIPAFVKKGYRSFLISGGMLPDGSIPFEKYYERLKELKEAHGLLYNFHVGFQKSKVAKELADVVSMDFFGEKTVLKSIYGLTLTPQEILDIAHFYENVVFHITVGIMGGKITHEEKALGILSRETDTVVLNVFIPTPGTKFGKSSPPDLQEVVKLFEKARKMFKRVILGCMQPRGEYRKKLQNELKDLVDVVTKPVGGTGEYKGCCAFIGRG
>NZ_CP003408.1|WP_008194253.1|983527_984292_-|metallophosphoesterase-family-protein
MRLAFFGDVHGNLEALKAVLEDMENKGVDEAFCLGDLVGYGPDPEAVVQTIMEKNIKTIMGNYDDAVGYSKESCGCSYAPGRETEVGDISLKWSIENTSEKTREFLRNLPKKLSFEVEGVRFLLVHGSPLNELLEYVKPNTPPDRLKKIVESVEEDVVVNGHTHLPMVKWVMGKLVLNPGSAGRPKDGDPRASYMIVDVENGTISFEIVRVKYDVKTTVEKIARNGLPVELATVLALGQTFDMGPGKVTFTLGR
>NZ_CP003408.1|WP_081501955.1|984326_985739_-|glutamate--tRNA-ligase
MRRCFELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLKWCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYDYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGPDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEKLQSFDPRDISNKGVIFDYQKLEWVNGKHMRRIDLEDLKREFIEWAKYVGREIPSLNESYFTEALRICREKVNTLSQLYDIMYPFMSDDYEYEKDYVEKFLKREEAERVLEEAKKAFEDLNSWNMEEIEKTLRDLAGRGLASKKVVFQLIRGAVTGKLVTPGLFETIEVLGKERTLKRLERTLQFLKKT
>NZ_CP003408.1|WP_008194257.1|985817_986018_-|cold-shock-protein
MRGTVKWFDSKKGYGFITMENGEDIFVHWSAIQMDGFKTLRENESVEFEVQQGTKGPQAVNVRPVR
>NZ_CP003408.1|WP_038050925.1|986249_987416_+|type-III-PLP-dependent-enzyme
MMEYWVRRALEVVKTPFLLFDLSIVEKKYLEMKAALKNADIYYAVKANSHPRIISLLARLGSNFDVASKGEIEKLLALGVDGKRMSFGNTIKREEDIAFAYKNGIRLFAVDSEMEVEKVAMNAPGSFVFVRVETDGADADWPLSRKFGTNPEHALQLLFYASKMKLIPAGLSFHVGSQNLNTESWKKAIEIAGRVFKKAMRSGLNLFLLNVGGGFPVQHTKPIPSMEEIGKAIEEAIDENLWFVHNLKVIAEPGRYMVGEAGWLVTKVLLKSERSGEKWVYIDAGVFHGLAETIQNFEYEVRVLGKEREELEEYHLAGPTCDSVDVIYDRIFLPKSITLNDLVCFINAGAYTVEYNTRFNGIEPPKMVFIEELTEISIEEKIRTRVLD
>NZ_CP003408.1|WP_008194260.1|987417_987816_-|YjbQ-family-protein
MFKRLTVRTSSRTQFVDITSEVVKVIEESKVRNGICVVFVPHTTAGVTINENADPSVRQDIMNTLNKLVPPSAGYTHLEGNADSHIKASLVGSSVTLIIENGRPLLGTWQGIYFCEFDGPRTRSVYVKVVEG
>NZ_CP003408.1|WP_008194262.1|987832_988108_-|hypothetical-protein
MKFLFWEFGKKKKSRETAKKRLEQIVGTTKRKQMNITEIIPKEMLDKNSDKIKERIASWLSETFNVEKEKIKIDLEEREGHVVIITNVFFK
>NZ_CP003408.1|WP_008194265.1|988112_988928_-|septum-site-determining-protein-MinD
MGNVIVVTSGKGGVGKTTITANLGCALAKLGEKVCLIDADIGLKNLDIVLGLENRIVYTMIDVVNGKVSPQEALVKHKMLKNLYLLPASQIATKEMISPNDMKAIVKELIPHFDYIIIDSPAGIERGFRNAVAPAERVLVVTTPELPAISDADRVIGLLENFGFSDEKINVIINRFKPHMVKKGEMLTTDDIKHTLSLEIIAVIPDSEDIIVASNTGIPVSLNGNSRISKNFENLARRIRGEGVPLENDFVTVSKGFLDTLKDFFSKLKRG

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Crispr_ID: NZ_CP003408_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003408_5

1065059-1066017

TypeIII

III-A

Consensus_repeat	Method
GTTTCAATAATTCCTTAGAGGTATGGAAAC	PILER-CR
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CRISPRCasFinder
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CRT

14 spacers

csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas8b1,cas7,cas5,cas4,cas1,cas2,cmr1gr7,cmr3gr5,cmr4gr7

The CRISPR arrays of NZ_CP003408_5

>merge|NZ_CP003408|5|1065059-1066017|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATAATTCCTTAGAGGTATGGAAACCCCGTTTTCGATTGCATCGTTGAAATCGATGATGACGTTTCAATAATTCCTTAGAGGTATGGAAACTAGCCGACGACGTCGAGATCCCCAACAACTCGTACTCGTTTCAATAATTCCTTAGAGGTATGGAAACTATGTATATGTCACGGCTTCAGAAGATCACAAAAGGTGTTTCAATAATTCCTTAGAGGTATGGAAACATCTCCAGTAATCTTGTTAAGCGCAAGATTCAAAACGTTTCAATAATTCCTTAGAGGTATGGAAACAAGAGATAGTAAACATAGTCTTCCCGCTCTTCGATTTGTTTCAATAATTCCTTAGAGGTATGGAAACTTCTGTTTTGATGATCTGTGCGCCTAACGGGAATCCAGTTTCAATAATTCCTTAGAGGTATGGAAACCCTTTTTCTGCGGGGTTCTTCAAGCGGTACTTCAACGTTTCAATAATTCCTTAGAGGTATGGAAACAGCACTCGAGAAGAAACCGCCACTTCTCGGCAAAGAGTTTCAATAATTCCTTAGAGGTATGGAAACTTTTACCATTGACATGCAGCTTTTCACTGGGAGCAGCGTTTCAATAATTCCTTAGAGGTATGGAAACCGAAGAAGAGGTGATGAGACGTGACATTGAGAGAACGTTTCAATAATTCCTTAGAGGTATGGAAACAGCTTCTGTTTCATCGTTCCATTTCCAATTCGGCTTGGTTTCAATACTTCCTTAGAGGTATGGAAACGCGCCCGCCAGCGCCAGCGCCAGCATGCCAAAAACAAGTTTCAATACTTCCTTAGAGGTATGGAAACCATGACCACAGACAACTACAAGGCTATCAAGAAGAGATTCAATCCTTCCTTAGAGGTATGAAAAGCCCACAAACCGTATGATTTCTTCATCTTCGATACTGTTTCAATACTTCCTTTCAGGTGCAATGAC

>NZ_CP003408|5|4|1065059-1065820|PILER-CR
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCCGTTTTCGATTGCATCGTTGAAATCGATGATGAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAGCCGACGACGTCGAGATCCCCAACAACTCGTACTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TATGTATATGTCACGGCTTCAGAAGATCACAAAAGGT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATCTCCAGTAATCTTGTTAAGCGCAAGATTCAAAAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAGAGATAGTAAACATAGTCTTCCCGCTCTTCGATTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTCTGTTTTGATGATCTGTGCGCCTAACGGGAATCCA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCTTTTTCTGCGGGGTTCTTCAAGCGGTACTTCAAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGCACTCGAGAAGAAACCGCCACTTCTCGGCAAAGA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTTTACCATTGACATGCAGCTTTTCACTGGGAGCAGC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CGAAGAAGAGGTGATGAGACGTGACATTGAGAGAAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGCTTCTGTTTCATCGTTCCATTTCCAATTCGGCTTG
GTTTCAATACTTCCTTAGAGGTATGGAAAC

>NZ_CP003408|5|5|1065059-1066017|CRISPRCasFinder
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCCGTTTTCGATTGCATCGTTGAAATCGATGATGAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAGCCGACGACGTCGAGATCCCCAACAACTCGTACTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TATGTATATGTCACGGCTTCAGAAGATCACAAAAGGT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATCTCCAGTAATCTTGTTAAGCGCAAGATTCAAAAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAGAGATAGTAAACATAGTCTTCCCGCTCTTCGATTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTCTGTTTTGATGATCTGTGCGCCTAACGGGAATCCA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCTTTTTCTGCGGGGTTCTTCAAGCGGTACTTCAAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGCACTCGAGAAGAAACCGCCACTTCTCGGCAAAGA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTTTACCATTGACATGCAGCTTTTCACTGGGAGCAGC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CGAAGAAGAGGTGATGAGACGTGACATTGAGAGAAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGCTTCTGTTTCATCGTTCCATTTCCAATTCGGCTTG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GCGCCCGCCAGCGCCAGCGCCAGCATGCCAAAAACAA
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CATGACCACAGACAACTACAAGGCTATCAAGAAGA
GATTCAATCCTTCCTTAGAGGTATGAAAAG	CCCACAAACCGTATGATTTCTTCATCTTCGATACT
GTTTCAATACTTCCTTTCAGGTGCAATGAC

>NZ_CP003408|5|4|1065059-1065952|CRT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCCGTTTTCGATTGCATCGTTGAAATCGATGATGAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAGCCGACGACGTCGAGATCCCCAACAACTCGTACTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TATGTATATGTCACGGCTTCAGAAGATCACAAAAGGT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATCTCCAGTAATCTTGTTAAGCGCAAGATTCAAAAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAGAGATAGTAAACATAGTCTTCCCGCTCTTCGATTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTCTGTTTTGATGATCTGTGCGCCTAACGGGAATCCA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCTTTTTCTGCGGGGTTCTTCAAGCGGTACTTCAAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGCACTCGAGAAGAAACCGCCACTTCTCGGCAAAGA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTTTACCATTGACATGCAGCTTTTCACTGGGAGCAGC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CGAAGAAGAGGTGATGAGACGTGACATTGAGAGAAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGCTTCTGTTTCATCGTTCCATTTCCAATTCGGCTTG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GCGCCCGCCAGCGCCAGCGCCAGCATGCCAAAAACAA
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CATGACCACAGACAACTACAAGGCTATCAAGAAGA
GATTCAATCCTTCCTTAGAGGTATGAAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003408.1\|WP_004082354.1\|1060570_1061710_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	COG1332_csm5gr7_CAS-III-A	gnl\|CDD\|224251
NZ_CP003408.1\|WP_004082345.1\|1071414_1071894_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP003408.1\|WP_008194398.1\|1058513_1058936_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	COG1421_csm2gr11_CAS-III-A	gnl\|CDD\|224339
NZ_CP003408.1\|WP_004082343.1\|1072868_1073132_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NZ_CP003408.1\|WP_004082348.1\|1067701_1068601_+\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7	cd09690_cas7_CAS-I-B	gnl\|CDD\|187821
NZ_CP003408.1\|WP_038050940.1\|1059695_1060574_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	COG1567_csm4gr5_CAS-III-A	gnl\|CDD\|273866
NZ_CP003408.1\|WP_004082344.1\|1071903_1072863_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NZ_CP003408.1\|WP_008194396.1\|1056345_1058499_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|274209
NZ_CP003408.1\|WP_038050942.1\|1062362_1062785_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003408.1\|WP_004082350.1\|1064073_1064424_-\|J-domain-containing-protein	unknown	unknown	gnl\|CDD\|197617
NZ_CP003408.1\|WP_008194400.1\|1058949_1059699_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
NZ_CP003408.1\|WP_004082339.1\|1077852_1078719_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|224255
NZ_CP003408.1\|WP_081501959.1\|1062821_1063616_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003408.1\|WP_004082340.1\|1076845_1077838_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	COG1769_cmr3gr5_CAS-III-B	gnl\|CDD\|224683
NZ_CP003408.1\|WP_004082347.1\|1068603_1069266_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NZ_CP003408.1\|WP_004082349.1\|1066086_1067727_+\|TIGR02556-family-CRISPR-associated-protein	cas8b1	cd09672_cas8b1_CAS-I-B	gnl\|CDD\|274199
NZ_CP003408.1\|WP_010865407.1\|1061670_1062258_+\|hypothetical-protein	csx22	mkCas0064_csx22_CAS-III-A	unknown
NZ_CP003408.1\|WP_004082342.1\|1073115_1074444_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NZ_CP003408.1\|WP_010865405.1\|1074401_1076849_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl\|CDD\|224272
NZ_CP003408.1\|WP_008194418.1\|1063612_1064083_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP003408.1\|WP_004082354.1\|1060570_1061710_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	COG1332_csm5gr7_CAS-III-A	4e-127	419.6	3.6
NZ_CP003408.1\|WP_004082345.1\|1071414_1071894_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	1.9e-44	146.4	0.0
NZ_CP003408.1\|WP_008194398.1\|1058513_1058936_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	COG1421_csm2gr11_CAS-III-A	2.2e-41	136.3	4.1
NZ_CP003408.1\|WP_004082343.1\|1072868_1073132_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	2e-31	103.0	0.5
NZ_CP003408.1\|WP_004082348.1\|1067701_1068601_+\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7	cd09690_cas7_CAS-I-B	1.6e-137	452.3	0.8
NZ_CP003408.1\|WP_004082344.1\|1071903_1072863_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	1.8e-134	442.6	9.6
NZ_CP003408.1\|WP_008194396.1\|1056345_1058499_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	4.5e-178	588.4	12.2
NZ_CP003408.1\|WP_038050940.1\|1059695_1060574_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	COG1567_csm4gr5_CAS-III-A	3.5e-93	306.9	1.1
NZ_CP003408.1\|WP_008194400.1\|1058949_1059699_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	1.9e-92	303.6	0.2
NZ_CP003408.1\|WP_004082339.1\|1077852_1078719_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	8.2e-101	332.0	0.4
NZ_CP003408.1\|WP_004082340.1\|1076845_1077838_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	COG1769_cmr3gr5_CAS-III-B	6.1e-150	493.5	0.6
NZ_CP003408.1\|WP_010865407.1\|1061670_1062258_+\|hypothetical-protein	csx22	mkCas0064_csx22_CAS-III-A	3.2e-133	435.7	0.4
NZ_CP003408.1\|WP_004082349.1\|1066086_1067727_+\|TIGR02556-family-CRISPR-associated-protein	cas8b1	cd09672_cas8b1_CAS-I-B	3.9e-201	664.2	12.7
NZ_CP003408.1\|WP_004082347.1\|1068603_1069266_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	3.1e-91	299.9	0.0
NZ_CP003408.1\|WP_010865405.1\|1074401_1076849_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	1.1e-233	772.5	10.5
NZ_CP003408.1\|WP_004082342.1\|1073115_1074444_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	3.9e-183	603.6	3.7

Protein	Function_ID	Function_description	E-value
NZ_CP003408.1\|WP_004082354.1\|1060570_1061710_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|224251	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	9.62566e-127
NZ_CP003408.1\|WP_004082345.1\|1071414_1071894_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.42478e-61
NZ_CP003408.1\|WP_008194398.1\|1058513_1058936_+\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|224339	COG1421, COG1421, CRISPR system related protein [Defense mechanisms].	7.10803e-32
NZ_CP003408.1\|WP_004082343.1\|1072868_1073132_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.2669e-30
NZ_CP003408.1\|WP_004082348.1\|1067701_1068601_+\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	gnl\|CDD\|187821	cd09690, Cas7_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csh2 family.	1.36059e-151
NZ_CP003408.1\|WP_004082344.1\|1071903_1072863_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.74885e-169
NZ_CP003408.1\|WP_008194396.1\|1056345_1058499_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|274209	TIGR02578, CRISPR-associated_protein_Cas10/Csm1, CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.	0
NZ_CP003408.1\|WP_038050940.1\|1059695_1060574_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|273866	TIGR01903, Hypothetical_protein., CRISPR type III-A/MTUBE-associated RAMP protein Csm4. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.	1.30166e-103
NZ_CP003408.1\|WP_004082350.1\|1064073_1064424_-\|J-domain-containing-protein	gnl\|CDD\|197617	smart00271, DnaJ, DnaJ molecular chaperone homology domain.	5.62059e-24
NZ_CP003408.1\|WP_008194400.1\|1058949_1059699_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	3.04783e-113
NZ_CP003408.1\|WP_004082339.1\|1077852_1078719_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	7.06809e-109
NZ_CP003408.1\|WP_004082340.1\|1076845_1077838_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|224683	COG1769, COG1769, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	6.73273e-156
NZ_CP003408.1\|WP_004082349.1\|1066086_1067727_+\|TIGR02556-family-CRISPR-associated-protein	gnl\|CDD\|274199	TIGR02556, hypothetical_protein_MM_0564, CRISPR-associated protein, TM1802 family. This minor cas protein is found in CRISPR/cas regions of at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.	0
NZ_CP003408.1\|WP_004082347.1\|1068603_1069266_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.0811e-98
NZ_CP003408.1\|WP_010865405.1\|1074401_1076849_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|224272	COG1353, COG1353, Predicted CRISPR-associated polymerase [Defense mechanisms].	1.99763e-169
NZ_CP003408.1\|WP_004082342.1\|1073115_1074444_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	7.67651e-172

>NZ_CP003408.1|WP_004082350.1|1064073_1064424_-|J-domain-containing-protein
MNPYEVLGVPPGASKEEIEKAYRELVKKYHPDRYKDHPLKDLAEEKMKQINEAYAVLMSGEFSETPGQENVHNTFYSMGYRYRGNDGCRDILACLGCAWCTDTCCEACGGDCIPCM
>NZ_CP003408.1|WP_008194418.1|1063612_1064083_-|hypothetical-protein
MHVKKVTYGGLVSALVVLLLYIGNFTKSKIFFAALSSVFTGVLVELFGIGSVPIIIAVNVLVFLLVPNPGYVLLFFVLSFYGFLRKKPILIRFLYLNASTLLLVFVASKFFNAELPDVSFSLYVLGFLGVQVAFFVYDYLYNRILQELLRIIRRKN
>NZ_CP003408.1|WP_081501959.1|1062821_1063616_-|hypothetical-protein
MMFGYIKPLKCELKVKEYEEFRGYYCGVCKALKKYSIIPRFLLTYEAASLGLLLSSLNNSDLKRKKELCIFTLKKVDFYSSSEIDEVARVFTALLREKLKDNYIDRKNPVYLFASAFLKKDPEISSLFENFYEMEKKEQDFKILAEEQGKIVGTILSKMVKEETQRKILYYLGLSLGKWLYIVDALDDFEKDKRKNVFNPLVKKYNGDLEKARSELRRHLKKCIDEIWKAYDLLDIKRNKTILDNVIFLGIPTTTEKILKRSQT
>NZ_CP003408.1|WP_038050942.1|1062362_1062785_+|hypothetical-protein
MKKGFIFLSFVVVILLFVTSFVSSSSGPSVPVIKGRWESGTFVGDFNGDGIVESFRVVLIVEDQNGSSFTGKTGAIGSPQGYDLETEVYFNITGTIDQYGYITIRIVGLENEPPTVGKYEEGRIKLQEPQYGEVILYRAS
>NZ_CP003408.1|WP_010865407.1|1061670_1062258_+|hypothetical-protein
MVCVVVGRFPIYVEEEFTSDEKKWEFVLSKIESIDPAVASFVEEAPDGTMRVIGPFRARSGYALVISSPLSSLFHFLVLNVPRVLNAVVKPGRAYVEIYEKRDLFDSPGVFTLKVKGAKGFSLKQLKEDMKLFLGVEVEPAFQPVSLRNTKNGVIVTLKTLTPETTALVKLSRLCGTGESRKYGHGDVEIYRIVE
>NZ_CP003408.1|WP_004082354.1|1060570_1061710_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MKVTLKTLTPLHIGSGEKYPPCNLVVLKEEENKKTAVRLITRKFLEVLRKHPEIKQNISENISKPLSFKEVENVEDGVFYEVSLYSDFSSGKKNPEIPEVVHHPDGSVYVPGSSLKGAVRLALTWHVLRNNRNLLEEFRRNVQKDLQNHKRAFYQTNEFLNGLFRFAPKEINTDYFRFLRVSDSQTLRTQLVVHDVGIFYVARPNTHPRTFPLEFVPINRDFVFDVRFVKEEYDYFLTHVRKRYGVELPGSIEEIFSIVNEFYSEVFKFERERFKKAKENFEKLDTSKIEERFQKIEKVLQSKKYVLIHIGYGGGLMANSLFILLDEETRKQVRNIIKYHKDDEAPLTRRYLVQSENNSYRVISPIGWCALWLEDSQST
>NZ_CP003408.1|WP_038050940.1|1059695_1060574_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MIGVRLLVKMSFRSGFKVGRGNETDSTLPTIHSDTIYGAVVYHAFKWSEKAEDFAKKLKVSSLLFVRGDRLLVPKPFLYNTYSLEEDDEESPKELKKASYVFLDKLADYRSIKEASGAVCKENPVEIVRIPRNSLDRITSSSNLYFVEVAFVKEGFTPAFLAEFPDEYEGLFKTAVKSLGDSGIGADSTYGYGLFNAEFESAPDFPEEGEYYLTLSLFVPSAEERSKMNEGYYRVVKRRGVKRDEMKVKKEISYVQEGSVFPFKPEGRGVLKIEDYFVQTSPLCVAFGGDGK
>NZ_CP003408.1|WP_008194400.1|1058949_1059699_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MERPILGKYIIKGKIILETGLRIGGQELGVNIGGIDNPVIRNPLTGEPYIPGSSVKGKMRSLMERLLNLDISGNKVRRHECEDKECKVCRVFGSTSTSKNGNNIPSRLLVRDAFLTEDSKTKLLSMETDLPYTEWKTENALDRVTCKADPRSFERIPAGAEFEFEIIYTAENEKHIKEDLENIATALELLEDDYLGGNGSRGYGKVKFSIEKVIFKSADYYKGEGTPVEKEVKGGVEGFKKAIPEIVKG
>NZ_CP003408.1|WP_008194398.1|1058513_1058936_+|type-III-A-CRISPR-associated-protein-Csm2
MAVSQSVSLKEDLKDLVRKAEEIGRELSGKLKTNQLRKFHGHLTKIWSNYIYKKKDYRDNPEKFNEEILNELHFMKIFLAYQVGRDIEGIKELKEILEPLINEIKTPDEFEKFKKFYDAILAYHKFHSESEKSNRRAARR
>NZ_CP003408.1|WP_008194396.1|1056345_1058499_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MKDREELVVGALLHDIGKIVRRAGDDRRHQIAGYDFTNKVKKFAVIQDYIHYHHEKDLLKKSLENEKVWYVCFADNLSSKERMTEGQKFEELRRMDNLLSKIPEGESSRNVTYFPAKPANEVVEAVKDMKEDQKTYEDLYRRFVEDAQKISPTPDDVNFLTYKYFSFIPQETRVEGDMDISLYDHLKVTAMLALSLYDYAKENDLKFESYQEMKSYFENSDVKPFLLVGGDVSGIQNFIANVSSKGALRSYRGRSFFIEILQEVVVDEILDKTGFYRTNVHFIGGGHFYLVLSNTEKVKKALEEIRNELNEWFRNRGLSLHLVIESVEFSVKDVEDMSKVFKKIGEKLNERKYRMYTEKDLEAIFPDDLNLIQEKGNHTCKICGNRVDRLFSIREGEEEIACDFCKEMYDLGRELLEESHVYLAERKNGKFEIFKRKFDFSREPGEGFSYKLRRIYEFSEKEKNVRRIQVVTYFKEQEFEKIAEKAPGKKIASLLVDVDNLGKIFLKGLKKKTLSRYSTLSRLMSFFFKERVESIVERKNVMVIYSGGDDLYLVGGWNDVLDVAKELREAFGRFTTNDFMTFSAGYVITDEKTSMSLIREMSERAESAAKKSGKNSIAFSNRSYYAVKWNTFFEMYNFYQELKEIADKVDRSVIRKALNLTREESPLNKAFLAYIEARENKDEDKRVANLMRENIDHLGENALNVILQFVDLHARKS
>NZ_CP003408.1|WP_004082349.1|1066086_1067727_+|TIGR02556-family-CRISPR-associated-protein
MLEKIYNLGKIGGDSFSNFAEEVPSDEGIAIFLESNSEGLVFKDVVSIEKKPGGKNSKIFLYRKQRGNFSSSVSPTMKFLDKSSGSRDPLERTFDVFLGFFDHPKISHIKDVLERNKEEIIDKLRNYDVKNRFLTISIDGKFPAEVPEILQAFEDKVTQKKTKGEAKCFLCGKEANSRLSDVFKFATFDKPGFTPFLSKKHPIQICDDCRSVLEKARRAIDEKLSFSFFSNNRILWIIPSVPDQDILESVIEKIYEIKDTDKNSKFRSFARLEEEIEKVLSENERAVYDFVLIEKEQQAERIVLHVEEVSPTRVRRILEESKKIESQLKEDGFKVSVNFSVIHKFFEDLDRYFNSLFSAVFSEGTFDKKLLLTLFLSKIRSDFFGNDTLLSAREAFATYVYLRRLNVLKGGASVLKGEDFFSRYPEFFDEPWKKAVFLEGVLANYLLYLQYVKRNSKAFTKKLKGLRLTKRDVEGLLPEIRAKIEAYGGMSESVAELFRETAEAFLEAGNWSASPDEISFVFVSGLSLGKTFFREVGVDESSEEQE
>NZ_CP003408.1|WP_004082348.1|1067701_1068601_+|type-I-B-CRISPR-associated-protein-Cas7/Csh2
MNPVKNRSEVLFIYDVKWANPNGDPLDENRPRFDEETSRLFVTDVRLKRTVRDYLAECYDETLWVTGEAVVPEDRVKELGIKDVNDACQKCIDIRLFGAVIPQSKKGAMESSITGPVQFRYGTSLHRVKLMTIQGTAAFATENSKQRSFREDQVVPYALIAFYGVINQNSAKFTGLTEEDVSKLLEGIWMGTKNLITRSKMEHNPRLLMRVVYKEGVNYHSGELDYLVKVVSEKEDEEIRDISELKLDVTELKQVLESLKDKIERIEYSVDNRLKLAENGEEKPFEEIFGGFQLVKLEW
>NZ_CP003408.1|WP_004082347.1|1068603_1069266_+|type-I-B-CRISPR-associated-protein-Cas5
MKVLVFDVSAPYALFRRPYTTTSSYTLPFPPRTTLLGLVGCVLGYSTPERLDSAKVAVQIKNPLKFLRTGTNFVETKKDKKASKRTRISLQLLKNPAYRVFFSWEDEDFERLKNLLEHSETIFTPYLGVASFIARLNYVGKYEATRVADFPCEVHTVVPNTVKLLPEPSHYLIFERVTRKMDKERNMLESAVYIFKRDLSPVKVEGGEVWRVGEQNIVWM
>NZ_CP003408.1|WP_004082345.1|1071414_1071894_+|CRISPR-associated-protein-Cas4
MMISGSVVLSYINCKREAWLMAHGVLPDQGNMHIEIGRFIHEDYSDSVMLPGMKIDTMFEREGVRVVGEVKKSSASKRGAEYQLLYYLYRLEEKGVKARGEIIVPKENKRIPVELTEENREKIKKVLEEVSSLLEEETPPPPKRKGICRKCGYELFCFS
>NZ_CP003408.1|WP_004082344.1|1071903_1072863_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MESVYLFSSGTLKRKANTICLETESGRKYIPVENVMDIKVFGEVDLNKRFLEFLSQKRIPIHFFNREGYYVGTFYPREYLNSGFLILKQAEHYINQEKRMLIAREIVSRSFQNMVDFLKKRKVRADSLTRYKKKAEEASNVSELMGIEGNAREEYYSMIDSLVSDERFRIEKRTRRPPKNFANTLISFGNSLLYTTVLSLIYQTHLDPRIGYLHETNFRRFSLNLDIAELFKPAVVDRLFLNLVNTRQINEKHFDEISEGLMLNDEGKSLFVKNYEQALRETVFHKKLNRYVSMRSLIKMELHKLEKHLIGEQVFGSEE
>NZ_CP003408.1|WP_004082343.1|1072868_1073132_+|CRISPR-associated-endonuclease-Cas2
MYVIMVYDVNEKRVAKILKIARKYLKWVQNSVLEGELSPGKYEKLKLEVSRLIDEKEDSVRFYVMDSQKVFNLETLGVEKGEDGFIF
>NZ_CP003408.1|WP_004082342.1|1073115_1074444_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MASSSEGVSVLEIECKVVTPMFSRGAAEPKWENGNRVYPFELRPQSIKGVLRFWFRAIAPTVIDIYSLEGLENLSKKEKERWEKEKYKGLKYLEGLIFGSQERKSSFSLEVKVEGESQALGKYMNNRFSFTDDRLKDTKYALYGLYDKSGIYEYLQEGKNFIIILQTANDSIKGIILSLLKLVSTFSGFGAKTRKGFGEFEIVDPKLTRNDYNLVISECQEHIREFVNHHNSSSKVKIKLGRTNFNGIPDFPCFCDYKIFEITKFSGNSPLEVLREVFKVGRNFKGWYPSLKQKMRFSEGDCVKDLVEALEGLLKGRKTEKKIEIPTAVVGLPIQYQNLGRGEIRRLKVIVSSSLRGLGIDDIDGRKASPLFLSVHEGERGKWKLVVLLMRSRVTNDGELITEVKGGKTPSSGIKTIVKEEKDYKNLLEWIKKLGGKEIQGG
>NZ_CP003408.1|WP_010865405.1|1074401_1076849_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MDQKTRRKRNPGGIIVSKREEFWKSKITALLHDPLVKAFDVKNHENIAGEILKTLGIKKTRGEEDRLASAMDRFPIPYEKDAKKQIHVSFDETLFVHPFSGEGLPEVKSFFQNQKVEEMKSRLINALTKLKEKNDTYEKLFHSIWWNLPYILEGSQFLPADTRIANHSIIDHLDVTSALKGCVEGKQVKASLVAVAIGPVQEVIAQARKVKDLWAGSYLLSYLIYGAIEVVGKKYGFDSIISPYLRGNYFVKETLESMGVDLEDLCPVPPRREVASLPNLFVAIVPSSDEEILKECEEAIRNRWKTIVDETKEKLSKSEFLFNEHSFDYQSSLFPDIQTSKVSFDEPERIVETVRNLFTGSGIEDFKEVLKKVSEHAGYKENPGTFYRYLHRLLTSKLAARKMARLFPGYEEDVYPDHFTDADDFGAGVRACAVFKDKDIEKDIEKEDRLGTLNTVKRFLPEILNIRIKFDSTTDVARNNQANKEIEDPEKFKNGYIAVLLMDGDRMGDWMLGENAPFLEKVINPKVIEMFQETDDLKYAWEKLKEFKTIQPAYHRGVSRTLGIFSQLVGKIVDRHNGMLVYSGGDDVLALLPADSVLECANDIRKFFSGHLEYEIEIESGSDVERFRSENGVLYHNDKPFAPLMGRAATMSAGIAIVHHKFPLQVALKIAREAEKRAKNVYGRNAFCVTQVKRSGQMIFAGSTWEIEEEDVVKRSLKILEEMKNYNVSHRSLYKLLSPDFSLYEDKMEKFVEFTLRRSIHSEKSKNEFIGNFKNFLSRLLAYYKNTKKSSFDEAMREALELLIMVYSMKRGESQ
>NZ_CP003408.1|WP_004082340.1|1076845_1077838_+|type-III-B-CRISPR-module-associated-protein-Cmr3
MKLWAIYFEPEDWVGFRETRRFSFSDRVESVFPSSFPFYGAVRTALLMKNQKFDPGDVERAGDVRMFGPFVFENTPEGRKHYFPLPRNIYKTDSGYRVTPIVEIDGVYLPWKPEYKMDSKESTSGGLIELSDLELLRSNTQGVCKFDLVSAEKIFKKETHIGVAFEENRKKVKERMIYSISYYRFYDGGFFMFTDDERTVELVSKLDGVFLGMKSKWSAVEVEELNTTAFDPPDYKNVAVALITPAVFDGGGMPKDKTILGKRVLTTAGIRKQVVSGWDLRENKPKKIYHAVSPGAVYYLEGKVNGHVLNESKFTDFGFGRCIFMKYEKL
>NZ_CP003408.1|WP_004082339.1|1077852_1078719_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MEGRVFLLYAETQVHAGTGFEIGVVDLPIQRERTTKFPIIHGIKGALRAYFRSLIKEDKIDEKKIEEIFGSEPKSDKGTVPGSLSFSEARILLFPVRNPDRLFVWVTCPLVLIKFAKSVGDNDVVKELEEANIDYGKAVSFYGSGEVFLEEVKLEPFVGELPRTRELISKISNCAPVDYLKKKMESDVVVVNDVLFSEIVQAMTEVVPRVRINREKKTVEEGGLWYEEYLPQDTVMYFVVRKTYYGNKEDSGKDSLMEVFENEVNGELINIGGKETVGKGMMWVHAWR

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Crispr_ID: NZ_CP003408_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003408_6

1205998-1207638

Orphan

III-A

Consensus_repeat	Method
GTTTCAATACTTCCTTAGAGGTATGGAAAC	PILER-CR
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CRISPRCasFinder
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CRT

24 spacers

The CRISPR arrays of NZ_CP003408_6

>merge|NZ_CP003408|6|1205998-1207638|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATACTTCCTTAGAGGTATGGAAACCAGCCCCCGCGAACGTCTTTCCTGATCCTATCCCGCCTACGTTTCAATACTTCCTTAGAGGTATGGAAACCGATATGTTTTGACCCATCTTTTGATGTTCTCAACAAGTTTCAATACTTCCTTAGAGGTATGGAAACATTTCGTCAACGCGTATGTTTCCGTCGCTCTGTCCCGCGTTTCAATACTTCCTTAGAGGTATGGAAACGTCCTAATTTTCCACATAAGAAACACCTCCTCTGGTTGTTTCAATACTTCCTTAGAGGTATGGAAACACAACGCAGGACGACCGCTCATTCTGGAAGGTGGACGTTTCAATACTTCCTTAGAGGTATGGAAACATTAGCTCTCTGAGTTCTTCCTTTGCTTCCTCTGGTGTTTTGTGTTTCAATACTTCCTTAGAGGTATGGAAACGTGTTTGTGACATTCTCTCACCTCTGATAGACTTGGTTTCAATACTTCCTTAGAGGTATGGAAACTCCGCTGCATCCGAACTGCAGGTGCTCGATCATCTTGTTTCAATACTTCCTTAGAGGTATGGAAACGGGTAGTACTTGGTTATGCCCTTTGCAGGGCTACCGGTTTCAATACTTCCTTAGAGGTATGGAAACGCTTTTATAGAACATACGACGGAACAATCGAACGGCACGTTTCAATACTTCCTTAGAGGTATGGAAACCTCCTACATATACTTTGCCCATTACCGGATCATCGTGTTTCAATACTTCCTTAGAGGTATGGAAACATTTCTCTTGCTTCGTTCGGTGTGAGGATTCCCGCCTGTTTCAATACTTCCTTAGAGGTATGGAAACAAGTATCCCGACATCTGGAGAAGGCTGGTAGGAGGGGTTTCAATACTTCCTTAGAGGTATGGAAACCTGAAGAACAGTTGAGGCCTGGTGACGTAATAGCGTGTTTCAATACTTCCTTAGAGGTATGGAAACTACGCGGGAAAATCAAAAAGCTTTCTCTCGACGTAGAGTTTCAATACTTCCTTAGAGGTATGGAAACACAACAACCTCGACACCGACGACTACAGGCTTGACGGTTTCAATACTTCCTTAGAGGTATGGAAACCGTTGCGGACGCGCTCTACAACGAGACAAAAAAGAGTTTCAATACTTCCTTAGAGGTATGGAAACACCAACTCTTTGACAACGTCGCCCGGTACTACAAAACGTTTCAATACTTCCTTAGAGGTATGGAAACGGATATCCGATGTAACTTTCAAAAGCGTTGCTGTATTTGTTTCAATACTTCCTTAGAGGTATGGAAACGTCGAATTCCTGAGGCGACATCGAAAGAGGCTTCCAGTGTTTCAATACTTCCTTAGAGGTATGGAAACAGAGAAGCATCGTCAAGGTCTTCGATCATTTGCCAGATGTTTCAATACTTCCTTAGAGGTATGGAAACTTTCTTCCACGCCAGGCAGTTCGAGCTATTCAACGATGTTTCAATAGTTCCTTAGAGGTATGGAAACGGGGAATATGGTGGATGCGTATGAGTATTGAGTTTCAAGTTTCAATAATTCCTTAGAGGTTTGGAAACGCTCCCCCTGTAGTCGTGGCCCACGATATTGAATCAGTTTCAATGCATTTTCAGAGGTACAAGAAC

>NZ_CP003408|6|5|1205998-1207504|PILER-CR
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CAGCCCCCGCGAACGTCTTTCCTGATCCTATCCCGCCTAC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CGATATGTTTTGACCCATCTTTTGATGTTCTCAACAA
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ATTTCGTCAACGCGTATGTTTCCGTCGCTCTGTCCCGC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GTCCTAATTTTCCACATAAGAAACACCTCCTCTGGTT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ACAACGCAGGACGACCGCTCATTCTGGAAGGTGGAC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ATTAGCTCTCTGAGTTCTTCCTTTGCTTCCTCTGGTGTTTTGT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GTGTTTGTGACATTCTCTCACCTCTGATAGACTTG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TCCGCTGCATCCGAACTGCAGGTGCTCGATCATCTT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GGGTAGTACTTGGTTATGCCCTTTGCAGGGCTACCG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GCTTTTATAGAACATACGACGGAACAATCGAACGGCAC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CTCCTACATATACTTTGCCCATTACCGGATCATCGT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ATTTCTCTTGCTTCGTTCGGTGTGAGGATTCCCGCCT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AAGTATCCCGACATCTGGAGAAGGCTGGTAGGAGGG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CTGAAGAACAGTTGAGGCCTGGTGACGTAATAGCGT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TACGCGGGAAAATCAAAAAGCTTTCTCTCGACGTAGA
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ACAACAACCTCGACACCGACGACTACAGGCTTGACG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CGTTGCGGACGCGCTCTACAACGAGACAAAAAAGA
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ACCAACTCTTTGACAACGTCGCCCGGTACTACAAAAC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GGATATCCGATGTAACTTTCAAAAGCGTTGCTGTATTT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GTCGAATTCCTGAGGCGACATCGAAAGAGGCTTCCAGT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AGAGAAGCATCGTCAAGGTCTTCGATCATTTGCCAGAT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TTTCTTCCACGCCAGGCAGTTCGAGCTATTCAACGAT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC

>NZ_CP003408|6|6|1205998-1207638|CRISPRCasFinder
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CAGCCCCCGCGAACGTCTTTCCTGATCCTATCCCGCCTAC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CGATATGTTTTGACCCATCTTTTGATGTTCTCAACAA
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ATTTCGTCAACGCGTATGTTTCCGTCGCTCTGTCCCGC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GTCCTAATTTTCCACATAAGAAACACCTCCTCTGGTT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ACAACGCAGGACGACCGCTCATTCTGGAAGGTGGAC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ATTAGCTCTCTGAGTTCTTCCTTTGCTTCCTCTGGTGTTTTGT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GTGTTTGTGACATTCTCTCACCTCTGATAGACTTG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TCCGCTGCATCCGAACTGCAGGTGCTCGATCATCTT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GGGTAGTACTTGGTTATGCCCTTTGCAGGGCTACCG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GCTTTTATAGAACATACGACGGAACAATCGAACGGCAC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CTCCTACATATACTTTGCCCATTACCGGATCATCGT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ATTTCTCTTGCTTCGTTCGGTGTGAGGATTCCCGCCT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AAGTATCCCGACATCTGGAGAAGGCTGGTAGGAGGG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CTGAAGAACAGTTGAGGCCTGGTGACGTAATAGCGT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TACGCGGGAAAATCAAAAAGCTTTCTCTCGACGTAGA
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ACAACAACCTCGACACCGACGACTACAGGCTTGACG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CGTTGCGGACGCGCTCTACAACGAGACAAAAAAGA
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ACCAACTCTTTGACAACGTCGCCCGGTACTACAAAAC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GGATATCCGATGTAACTTTCAAAAGCGTTGCTGTATTT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GTCGAATTCCTGAGGCGACATCGAAAGAGGCTTCCAGT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AGAGAAGCATCGTCAAGGTCTTCGATCATTTGCCAGAT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TTTCTTCCACGCCAGGCAGTTCGAGCTATTCAACGAT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	GGGGAATATGGTGGATGCGTATGAGTATTGAGTTTCAA
GTTTCAATAATTCCTTAGAGGTTTGGAAAC	GCTCCCCCTGTAGTCGTGGCCCACGATATTGAATCA
GTTTCAATGCATTTTCAGAGGTACAAGAAC

>NZ_CP003408|6|5|1205998-1207572|CRT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CAGCCCCCGCGAACGTCTTTCCTGATCCTATCCCGCCTAC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CGATATGTTTTGACCCATCTTTTGATGTTCTCAACAA
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ATTTCGTCAACGCGTATGTTTCCGTCGCTCTGTCCCGC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GTCCTAATTTTCCACATAAGAAACACCTCCTCTGGTT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ACAACGCAGGACGACCGCTCATTCTGGAAGGTGGAC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ATTAGCTCTCTGAGTTCTTCCTTTGCTTCCTCTGGTGTTTTGT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GTGTTTGTGACATTCTCTCACCTCTGATAGACTTG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TCCGCTGCATCCGAACTGCAGGTGCTCGATCATCTT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GGGTAGTACTTGGTTATGCCCTTTGCAGGGCTACCG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GCTTTTATAGAACATACGACGGAACAATCGAACGGCAC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CTCCTACATATACTTTGCCCATTACCGGATCATCGT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ATTTCTCTTGCTTCGTTCGGTGTGAGGATTCCCGCCT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AAGTATCCCGACATCTGGAGAAGGCTGGTAGGAGGG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CTGAAGAACAGTTGAGGCCTGGTGACGTAATAGCGT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TACGCGGGAAAATCAAAAAGCTTTCTCTCGACGTAGA
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ACAACAACCTCGACACCGACGACTACAGGCTTGACG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CGTTGCGGACGCGCTCTACAACGAGACAAAAAAGA
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ACCAACTCTTTGACAACGTCGCCCGGTACTACAAAAC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GGATATCCGATGTAACTTTCAAAAGCGTTGCTGTATTT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GTCGAATTCCTGAGGCGACATCGAAAGAGGCTTCCAGT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AGAGAAGCATCGTCAAGGTCTTCGATCATTTGCCAGAT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TTTCTTCCACGCCAGGCAGTTCGAGCTATTCAACGAT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	GGGGAATATGGTGGATGCGTATGAGTATTGAGTTTCAA
GTTTCAATAATTCCTTAGAGGTTTGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003408.1\|WP_008194716.1\|1211730_1212600_+\|1,4-dihydroxy-2-naphthoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|224491
NZ_CP003408.1\|WP_004081904.1\|1214177_1215194_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP003408.1\|WP_004082158.1\|1195931_1197593_+\|phosphodiester-glycosidase-family-protein	unknown	unknown	gnl\|CDD\|378342
NZ_CP003408.1\|WP_008194723.1\|1213327_1214185_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP003408.1\|WP_004082145.1\|1202443_1202902_+\|YaaR-family-protein	unknown	unknown	gnl\|CDD\|224642
NZ_CP003408.1\|WP_008194698.1\|1202892_1203714_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|272894
NZ_CP003408.1\|WP_008194713.1\|1211280_1211703_-\|RrF2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273242
NZ_CP003408.1\|WP_004082147.1\|1201790_1202447_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003408.1\|WP_008194728.1\|1215190_1216507_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223717
NZ_CP003408.1\|WP_008194711.1\|1210881_1211319_+\|ferritin	unknown	unknown	gnl\|CDD\|224548
NZ_CP003408.1\|WP_008194708.1\|1209936_1210761_+\|endoglucanase	unknown	unknown	gnl\|CDD\|366751
NZ_CP003408.1\|WP_004082149.1\|1201210_1201807_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224627
NZ_CP003408.1\|WP_008194733.1\|1216801_1217143_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238244
NZ_CP003408.1\|WP_004082140.1\|1203718_1204615_-\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NZ_CP003408.1\|WP_081501974.1\|1212599_1213226_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP003408.1\|WP_004082156.1\|1197592_1199644_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|237186
NZ_CP003408.1\|WP_008194696.1\|1199645_1200914_+\|alpha-amylase	unknown	unknown	gnl\|CDD\|200452
NZ_CP003408.1\|WP_004082138.1\|1204627_1205353_-\|L-aspartate-dehydrogenase	unknown	unknown	gnl\|CDD\|163567
NZ_CP003408.1\|WP_008194730.1\|1216513_1216792_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP003408.1\|WP_004082152.1\|1200928_1201210_+\|DUF503-domain-containing-protein	unknown	unknown	gnl\|CDD\|224467

Protein	Function_ID	Function_description	E-value
NZ_CP003408.1\|WP_008194716.1\|1211730_1212600_+\|1,4-dihydroxy-2-naphthoate-octaprenyltransferase	gnl\|CDD\|224491	COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism].	1.34141e-93
NZ_CP003408.1\|WP_004081904.1\|1214177_1215194_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	3.69217e-138
NZ_CP003408.1\|WP_004082158.1\|1195931_1197593_+\|phosphodiester-glycosidase-family-protein	gnl\|CDD\|378342	pfam09992, NAGPA, Phosphodiester glycosidase. This is a family conserved from bacteria to humans. The structure of a member from Bacteroides has been crystallized and modelled onto the luminal region of the human member of the family, the transmembrane glycoprotein N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase. There is some conservation of potentially functional residues, implying that in the bacterial members this family acts in some way as a phosphodiester glycosidase. The human protein is also present, so the eukaryotic members are likely to be catalyzing the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides.	9.70521e-21
NZ_CP003408.1\|WP_008194723.1\|1213327_1214185_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.77853e-95
NZ_CP003408.1\|WP_004082145.1\|1202443_1202902_+\|YaaR-family-protein	gnl\|CDD\|224642	COG1728, COG1728, Uncharacterized protein conserved in bacteria [Function unknown].	1.24321e-54
NZ_CP003408.1\|WP_008194698.1\|1202892_1203714_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|272894	TIGR00078, Probable_nicotinate-nucleotide_pyrophosphorylase, nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating) [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	1.84242e-122
NZ_CP003408.1\|WP_008194713.1\|1211280_1211703_-\|RrF2-family-transcriptional-regulator	gnl\|CDD\|273242	TIGR00738, Putative_HTH-type_transcriptional_regulator, Rrf2 family protein. This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. [Unknown function, General].	9.00545e-49
NZ_CP003408.1\|WP_008194728.1\|1215190_1216507_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	5.97527e-93
NZ_CP003408.1\|WP_008194711.1\|1210881_1211319_+\|ferritin	gnl\|CDD\|224548	COG1633, COG1633, Uncharacterized conserved protein [Function unknown].	3.59917e-28
NZ_CP003408.1\|WP_008194708.1\|1209936_1210761_+\|endoglucanase	gnl\|CDD\|366751	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12.	5.15493e-27
NZ_CP003408.1\|WP_004082149.1\|1201210_1201807_+\|HD-domain-containing-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	4.67197e-75
NZ_CP003408.1\|WP_008194733.1\|1216801_1217143_+\|hypothetical-protein	gnl\|CDD\|238244	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.	0.00467565
NZ_CP003408.1\|WP_004082140.1\|1203718_1204615_-\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	8.06898e-160
NZ_CP003408.1\|WP_081501974.1\|1212599_1213226_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	3.21475e-10
NZ_CP003408.1\|WP_004082156.1\|1197592_1199644_+\|elongation-factor-G	gnl\|CDD\|237186	PRK12740, PRK12740, elongation factor G-like protein EF-G2.	0
NZ_CP003408.1\|WP_008194696.1\|1199645_1200914_+\|alpha-amylase	gnl\|CDD\|200452	cd11313, AmyAc_arch_bac_AmyA, Alpha amylase catalytic domain found in archaeal and bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes firmicutes, bacteroidetes, and proteobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	4.98719e-161
NZ_CP003408.1\|WP_004082138.1\|1204627_1205353_-\|L-aspartate-dehydrogenase	gnl\|CDD\|163567	TIGR03855, NAD_NadX, aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.	7.75234e-113
NZ_CP003408.1\|WP_008194730.1\|1216513_1216792_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	2.34776e-41
NZ_CP003408.1\|WP_004082152.1\|1200928_1201210_+\|DUF503-domain-containing-protein	gnl\|CDD\|224467	COG1550, COG1550, Uncharacterized protein conserved in bacteria [Function unknown].	8.45038e-39

>NZ_CP003408.1|WP_004082138.1|1204627_1205353_-|L-aspartate-dehydrogenase
MTVLIIGMGNIGKKLVELGNFEKIYAYDRISKDIPGVVRLDEFQVPSDVSTVVECASPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIGGLDVLSSIKDFVKNVRIETIKPPKSLGLDLKGKTVVFEGSVEEASKLFPRNINVASTIGLIVGFEKVKVTIVADPAMDHNIHIVRISSAIGNYEFKIENIPSPENPKTSMLTVYSILRTLRNLESKIIFG
>NZ_CP003408.1|WP_004082140.1|1203718_1204615_-|quinolinate-synthase-NadA
MVDEILKLKKEKGYIILAHNYQIPELQDIADFVGDSLQLARKAMELSEKKILFLGVDFMAELVKILNPDKKVIVPDRSATCPMANRLTPEIIREYREKFPDAPVVLYVNSTSECKTLADVICTSANAVEVVKKLDSSVVIFGPDRNLGEYVAEKTGKKVITIPENGHCPVHQFNAESIDAVRKKYPDAKVIVHPECPKPVRDKADYVGSTGQMEKIPEKDPSRIFVIGTEIGMIHKLKKKFPDREFVPLEMAVCVNMKKNTLENTLHALQTESFEVILPKEVIEKAKKPILRMFELMG
>NZ_CP003408.1|WP_008194698.1|1202892_1203714_-|carboxylating-nicotinate-nucleotide-diphosphorylase
MEKILDLLMSFVKEDEGKLDLASFPLRNTTAGAHLLLKTENVVASGIEVSRMFLEKMGLLSKFNVEDGEYLEGTGVIGEIEGNTYKLLVAERTLLNVLSVMFSVATTTRRFAEKLKHAKIAATRKILPGLGVLQKIAVVHGGGDPHRLDLSGCVMIKDNHLKMYGSAERAVQEVRKIIPFTTKIEVEVENLEDALRAVEAGADIVMLDNLSPEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSSRLTLQEVFVDLSLEIQR
>NZ_CP003408.1|WP_004082145.1|1202443_1202902_+|YaaR-family-protein
MRIDPLGGESLKNQEVKGKKSGKTSRVGESKKKEFFDILEDVKEDHFEKLLEEAVEEVIDSGNELVRSPTPSNLKRYKNAIKEFLKLIEKKIYKLAGSFDMNSGRARLHLVVEEVNEKLMDLTEKIMKNEWQTINLAARIEEINGLILNLYR
>NZ_CP003408.1|WP_004082147.1|1201790_1202447_+|hypothetical-protein
MKRSSKIVLVIVLIAVALSAVLFLYYRSFLTSPDYKAAEVHYLFRVGDNSYFVRIDDSKRMVFVVSFPKESFDPERRETIISERPLSDLEKMENLLDVKAERAFYSVMSEEEFLKLCQDLLGKQCESFSNFVKEFSKRKLKFFDFLFVGSWLKKFGFNNLNRFSLYKFFEKISNYAVDVFEAPTVTEKPIVIEVQGKKYERLYLDSEKLKAISEEMKR
>NZ_CP003408.1|WP_004082149.1|1201210_1201807_+|HD-domain-containing-protein
MVVITNELESIMERLLSRKRINHVRSVVEFSRKLGEMYGADSNKLELAAISHDLFRDVPPRKLLKMAQAYGLKISELERTHPVLLHGKVAAEFLKRRFNVEDEEVLNAVAYHTSGHVSFKTVGKILFIADSLEFTRDFPGVDELRRIAFRNLEEGFFQVLKNKIFYAVGKNYLLIPETVELWNSILMGRGGLVDEEVE
>NZ_CP003408.1|WP_004082152.1|1200928_1201210_+|DUF503-domain-containing-protein
MSVGVVSLRVRLFGVRSLKEKRGILKRLMNDLRKKYNISISEVGAHDSKSFFEIGIAMVNTDRAVIERVFDSIIDYLDLYPGMEVEEIEREVW
>NZ_CP003408.1|WP_008194696.1|1199645_1200914_+|alpha-amylase
MNFKRLIIYEAFARAYPGEKGKKFDSLIKDLERLKGMGINTVWLMPIHPTGIEGRKGTLGSPYAIRDYYEIDPLIGTKDDFKRFVKRAHELNMYVLMDMVLNHAAADNVLVREHPEWFLRDEKGNPTRKVPDWTDIVDFDYSNGELRKYMINMMKYWVEEFDVDGFRCDVAGLVPLDFWLQARKELDPVKRLIWLSETHDPYMYQAFDITYDYDGYYKFRDFIEGRGSLREYVDFLRMQDHMYPRGYIKMRFLENHDQPRIAKFIEEDSLVHWIAFLFTFKGVPLVHNGQEYGLKEDVDIFNEYTLPFPMEENRISILHRKLAHYRYGTSVFSEGEMLFVKNDQPEKVISYLWRYENRYILCMLNPLLENTKVTLDFSGIWENACIHSKNVFNDEIVRVPVKNSRATVEIGKEPLILSFVLY
>NZ_CP003408.1|WP_004082156.1|1197592_1199644_+|elongation-factor-G
MGGLQNVRSAALIGHNGSGKSLLLAQILYKSGLIDKADTKYVDYDPVEEEKGASFSSHVASLEWKGKKVYLIDTPGFSDFISEVINGIFVSENIISVVNAVAGVEIQTERTWNMADEMKKPIIVFVNQMDKERANFENVVAELKERFSRKIVPVVVPIGAAENFEGVVDLLKKKAYRYDGDKVQEEDMPESFNDMRSEILEDIVEQDEELMMRYLDGEDIGYDELMRVLKEGYKKGEIVPVLSGSALKGIGLDLLLDYLGDIGVSPEEAPSYKALLEDGTEIEVKFSEEEPFCAYIFKSVVDQFVGRITFAKVIAGVLRPGDTVVNVQKDVTEKVGHVYVPILKQQKEVESAGPGEIVVLLKLKEGAVGETLAHRDRRVKIVPPAFPEPMFSRSVHPKSKSDIDKISSGLSRLSDSDPTFVWEYDPETGETVVSGLGAMHLDVMIERLKKIFGVDVEVGKPKIAYRETITTTAVAEHKHKKQTGGHGQYGHVKIQLEPLPRGQGYEFVDKIVGGVIPRNFIPSVDKGIREAMKKGVLAGYPVTDVRVILFDGSYHEVDSSDISFQIAAIQAFKKGMEAAKPVILEPIMEVEVFVPEENAGDVMGEISSRRGRPLGMEPSGKGMVKVKAEVPLAEMLDFSSKLSSITSGRGYFTMRFQRYEIVPPNIQEKIIEERRREMQEQEK
>NZ_CP003408.1|WP_004082158.1|1195931_1197593_+|phosphodiester-glycosidase-family-protein
MKQIILVLLIFASVVFGSYLISGGKAFPLRTVFSEGIYYVCAEDLAPAGVGYIHSNGYHYIVYDNHVLFIKEHETIFDFVEKLSPPLFVDGLLFVPIDALKKVMEGYQMYTKGEKVLIYDSLPIVLSAAKEKNGVTITYTGTIVPDMVSVEKSMGRVRINLSPVVVSLPNVSEDIKVELEKNGLSFIVDVGNFYPDVEYSIGDGKLLFRFLLVEGFFGRLEVADGVVFERKIEEFDEGEKTVVNYLIMDPEKVTIKPVVSENGFGTIERLDEMVKRVGGIAGINGNYFDPVTKFPIGLVVIDGKPYSAMFSGRPVFAITEDNEVFIGRVIVDVTLMVKDVLFLVKGINTLGEGEVLVYTKEFSKEIPKKDDKIYFVVKDSKVSQIGYKSHAEDSEYVVSISKKYEEYLSDLKEGDEVYISLQPNIPLRIKQAVEGGPLLIQNGAPIPDAWEEKARYGGGIAYAKAPRTVIATKDGKLWFLVFEGYNHITRGLTYDELVDFLVSRGFEDAMCVDGGSSSVMAVAGSLFGRTENSTAAIPVGIVVWEKKKTEVGK
>NZ_CP003408.1|WP_008194708.1|1209936_1210761_+|endoglucanase
MRWAVLLMVVFSALLFSSEVVLTSVGATDISFNGFPVTMELNFWNVKSYEGETWLKFDGEKVEFYADLYNIVLQNPDSWVHGYPEIYYGYKPWAGHNSGVEFLPVKVKDLPDFYVTLDYSIWYENNLPINLAMETWITKSPDQTSVSSGDAEIMVWFYNNVLMPGGQKVDEFTTTVEINGVKQEAKWDVYFAPWGWDYLAFRLTTPMKEGKVKINVKDFVQKAAEVVKKHSTRIDNFEELYFCVWEIGTEFGDPNTTAAKFGWTFRDFSVEVVK
>NZ_CP003408.1|WP_008194711.1|1210881_1211319_+|ferritin
MKVSDILTMAIRLEEEGERFYRELSEHFDGEIKKTFLELADQERIHAEIFRKMSDQENWDEVDSYLAGYAFYEVFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGLVNSDAQKTVKKIIDQEKEHLRKLLEMKREST
>NZ_CP003408.1|WP_008194713.1|1211280_1211703_-|RrF2-family-transcriptional-regulator
MFGKCQKHVRYALRLLVRLSLENRPMSSSELAEKELITRNFALKVLHYLKRSGLVNSIKGKNGGFVLAKSPDEISFLDVISVFEKDLVIVDCNSRCKNYRACRAKYFWNWLSDYLKDLFSNITIKDIASGTFTFHLEKLS
>NZ_CP003408.1|WP_008194716.1|1211730_1212600_+|1,4-dihydroxy-2-naphthoate-octaprenyltransferase
MKYFVAVRPFSFVASAFPVTVGAMLAEEFSLTRYILSLIASIFLHAGVNTTNDYFDYKKGVDTKDSLGSSGLLVSGKITPREELLLSVFCYAVSVVLGLVLIKISGPALLWLGLTGLVLGYAYTGHPFYLKYKSLGMFLVFILMGPLMVLGAYYVQTGRFSLEALLVSIPVGIATDLILLANEIRDSEFDKRSGIKTLPILIGDRAAFLLYAVLTGLIYVFIVILVSTGVFRVISLVSLVSLPLYIRVIKQLFQKSAGRKNAREIADVDKMSALAEMILFVSMILGLLR
>NZ_CP003408.1|WP_081501974.1|1212599_1213226_+|CPBP-family-intramembrane-metalloprotease
MPMVKRISEMSFLSVLIGLFLGWYFVFQVNVLDFWWRMFITTLIFSVISIFLGGKGNIKPNQYEAPLAIYSAVAAYLLFVVGYLISLLIPPFHRDVVSVYGLAEGQNALKVIILLVFIAFFEEIIWRGFVTEFLLQRMDVVPSILISSLLYSVVHVFTGNMALIVGAFVLGIILSLLYVITGKVSTPAFAHALWSLLIFVVLPLKGGF
>NZ_CP003408.1|WP_008194723.1|1213327_1214185_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNVVVCIKQVPDTTNVRIDRKTNNLVREGVPSIINPDDERALELAAQLKEKFGATVYVITMGPPQAKEALKDAIAFGLDEAVHLSDRAFAGADTLATTYTLYWGIKKIEERIGKIDLILTGKQAVDGDTGQVGPGLATRFGYALGAYVVRIEEIDPEKKEMVIVRRLDRGFEKIRLKLPAVLTITDELNKPRYADLPNLIRAIRYEPIVWTHKDLGLDPKKCGFFGSPTRVVSTNIPPARKGGDIISKNEDPEVAAEKLIEALKKFEAVRLVEALKPVLEGEKDE
>NZ_CP003408.1|WP_004081904.1|1214177_1215194_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MSEKKIIFVLIEHHGGKAHPVSWELIGKARDLASKLENSEVWGVLLGEGLESVAKEAIQRGADKVLYVKNREFNTYVNYLYKKALVDMVRKYRPEIFLIGATLEGRELAGMVATELETGLTADCTGLDIIPDKKLLAMTRPTFGGNLMATIMCPDHRPQMATVRPGVMKELPPDPERTGEIIEEEYDLGTFDKLIEILETIPLQTQVNLEYAPVVVAGGKGVGGPEGFKKLKELADLLGGEVGASRAAVKAGWISPEHQVGQTGKTVRPVLYFACGISGAIQHVVGIKESEIIVAINIDEKAPIFDIADIGIVGDLHKVVPALTAKLRELLNKSGVKK
>NZ_CP003408.1|WP_008194728.1|1215190_1216507_+|NAD(P)/FAD-dependent-oxidoreductase
MKIEFDVVVVGAGPSGLSCAYVLAKNGLKVAVVEKGEYPGSKNVMGGVLYVHPLKEIMPDFLEKTANSKALERNVIEQNLWLLGNEGVIKIGHRNVEWKENPNAFTVLRANFDRWFAQEVEKAGALIIPKTKVEDFLRNEKGEIAGVVTSRPKGEIHSKAVVIAEGVNPILTMKAGLRKEDLKPHMVAVAVKEVISVPEEVVNRVFGVEGNDGATIELLGSWSEGMFGMGFLYANRSSVSLGCGVLLEDLRKKKIKPYQLLENLKNHPVISDMLGEYRNNTMEYLAHLIPEGGYYAMPKVYGDRVLVCGDAAMLVNSIHREGSNHAITSGRLAAETLLEAFEKGDFSEKTLKNYYLRLKESFILKDLEKYKDLMPTMEKNHQFVEIYPDLANDALKRFLQVDGTPKWDVQKQIADMVLSRRSLIGISLDLLRFWRAVR
>NZ_CP003408.1|WP_008194730.1|1216513_1216792_+|ferredoxin-family-protein
MRIEDKLYLNRYRTDEENPHLKIKDESICAERCSDRPCVSCCPADVYEWTESGMEVKFEGCLECGTCRIVCPFGNIEWKYPRGNYGVLYKFG
>NZ_CP003408.1|WP_008194733.1|1216801_1217143_+|hypothetical-protein
MYVKIDRKKLPCVETEGTVLCTTCGNSYQIEPRQKLHSIIVTTCPHCGHQNINVVTNSVKFIEEVLSKIDRLRKDLMELKKSLEIEMQQNGFVDNYPEVFKADDEKQAEPKLL

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Crispr_ID: NZ_CP003408_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003408_7

1320374-1321606

Orphan

III-A

Consensus_repeat	Method
GTTTCAATACTTCCTTAGAGGTATGGAAAC	PILER-CR
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CRISPRCasFinder
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CRT

18 spacers

The CRISPR arrays of NZ_CP003408_7

>merge|NZ_CP003408|7|1320374-1321606|PILER-CR,CRISPRCasFinder,CRT
GTTTCCATACCTCTAGGGAAGTATTGAAACTCGGTGATATCCTTAAAGGTCGTGCCGTAAAGCGAGTGTTTCCATACCTCTAAGGAAGTATTGAAACTACAGGGCTGGCAGTACGAAGAGGTTATAGACGAAAGTTTCCATACCTCTAAGGAATTATTGAAACACGAGTGCAGACCAGATGGGAAAATAGTTGTTACCTTGTTTCCATACCTCTAAGGAATTATTGAGACTGATAGAATGGCTTGGAATCTGGATTGATAAAATCCTGTTTCCATACCTCTAAGGAAGTATTGAAACGGACGGTCAGTTTTTGAAATTACACACAGAAGGAGCTAGTTTCCATACCTCTAAGGAAGTATTGAAACTCGAAAAAAGACGTCTTGTTTTTGAACAAGAGCGAGGTTTCCATACCTCTAAGGAAGTATTGAAACACAACAACCGGCGACTAAAATTCCTCGCCGTATCAGGGTTTCCATACCTCTAAGGAAGTATTGAAACCAGAGATTGTTTCAGTTGTTGTATCTGTGTAGAACTGTTTCCATACCTCTAAGGAAGTATTGAAACCGCAGAAGCCATCCCTGTATAAGTCAGGAGCAGAAAAGTGTTTCCATACCTCTAAGGAAGTATTGAAACAGGCAAAAGAGATTGTAAAAAGATACGGAGGAAAGTTGTTTCCATACCTCTAAGGAAGTATTGAAACGGGAGCGCCGGGAAGGGGATAACTAAGCTTTATCCGTTTCCATACCTCTAAGGAAGTATTGAAACGATATATGTCACAGATTCTCGGAGTAGACGTTCCCGGTTTCCATACCTCTAAGGAAGTATTGAAACTCTCTGCTCTCATACAAAACAAAACAGATAGGGTTATGTTTCCATACCTCTAAGGAAGTATTGAAACTGGTTAAGCGGTGTTACTATGGATATTGGTGAAAAGAGTTTCCATACCTCTAAGGAAGTATTGAAACCCGAGCCAATCGAGGAACTTTGTCGCACCTGTTCCTGTTTCCATACCTCTAAGGAAGTATTGAAACAGGGATAGTCCTGTGGGGGTTGCTGGGGCGGAACCGTGTTTCCATACCTCTAAGGAAGTATTGAAACTTTGCTTAATCACGATATCTTTTTTATTAATGCCCGTTTCCATACCTCTAAGGAAGTATTGAAACAGTGGACATAAGACGTGTCGAACTTGTCTACGACAAAAGAGTTTCCATACCTCTAAGGAAGTATTGAAAC

>NZ_CP003408|7|6|1320374-1321606|PILER-CR
GTTTCCATACCTCTAGGGAAGTATTGAAAC	TCGGTGATATCCTTAAAGGTCGTGCCGTAAAGCGAGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TACAGGGCTGGCAGTACGAAGAGGTTATAGACGAAA
GTTTCCATACCTCTAAGGAATTATTGAAAC	ACGAGTGCAGACCAGATGGGAAAATAGTTGTTACCTT
GTTTCCATACCTCTAAGGAATTATTGAGAC	TGATAGAATGGCTTGGAATCTGGATTGATAAAATCCTGTT
TCCATACCTCTAAGGAAGTATTGAAACGGA	CGGTCAGTTTTTGAAATTACACACAGAAGGAGCTAGTT
TCCATACCTCTAAGGAAGTATTGAAACTCG	AAAAAAGACGTCTTGTTTTTGAACAAGAGCGAGGTT
TCCATACCTCTAAGGAAGTATTGAAACACA	ACAACCGGCGACTAAAATTCCTCGCCGTATCAGGGTT
TCCATACCTCTAAGGAAGTATTGAAACCAG	AGATTGTTTCAGTTGTTGTATCTGTGTAGAACTGTT
TCCATACCTCTAAGGAAGTATTGAAACCGC	AGAAGCCATCCCTGTATAAGTCAGGAGCAGAAAAGTGTT
TCCATACCTCTAAGGAAGTATTGAAACAGG	CAAAAGAGATTGTAAAAAGATACGGAGGAAAGTTGTT
TCCATACCTCTAAGGAAGTATTGAAACGGG	AGCGCCGGGAAGGGGATAACTAAGCTTTATCCGTT
TCCATACCTCTAAGGAAGTATTGAAACGAT	ATATGTCACAGATTCTCGGAGTAGACGTTCCCGGTT
TCCATACCTCTAAGGAAGTATTGAAACTCT	CTGCTCTCATACAAAACAAAACAGATAGGGTTATGTT
TCCATACCTCTAAGGAAGTATTGAAACTGG	TTAAGCGGTGTTACTATGGATATTGGTGAAAAGAGTT
TCCATACCTCTAAGGAAGTATTGAAACCCG	AGCCAATCGAGGAACTTTGTCGCACCTGTTCCTGTT
TCCATACCTCTAAGGAAGTATTGAAACAGG	GATAGTCCTGTGGGGGTTGCTGGGGCGGAACCGTGTT
TCCATACCTCTAAGGAAGTATTGAAACTTT	GCTTAATCACGATATCTTTTTTATTAATGCCCGTT
TCCATACCTCTAAGGAAGTATTGAAACAGT	GGACATAAGACGTGTCGAACTTGTCTACGACAAAAGAGTT
TCCATACCTCTAAGGAAGTATTGAAAC

>NZ_CP003408|7|7|1320374-1321606|CRISPRCasFinder
GTTTCCATACCTCTAGGGAAGTATTGAAAC	TCGGTGATATCCTTAAAGGTCGTGCCGTAAAGCGAGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TACAGGGCTGGCAGTACGAAGAGGTTATAGACGAAA
GTTTCCATACCTCTAAGGAATTATTGAAAC	ACGAGTGCAGACCAGATGGGAAAATAGTTGTTACCTT
GTTTCCATACCTCTAAGGAATTATTGAGAC	TGATAGAATGGCTTGGAATCTGGATTGATAAAATCCT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GGACGGTCAGTTTTTGAAATTACACACAGAAGGAGCTA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TCGAAAAAAGACGTCTTGTTTTTGAACAAGAGCGAG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	ACAACAACCGGCGACTAAAATTCCTCGCCGTATCAGG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CAGAGATTGTTTCAGTTGTTGTATCTGTGTAGAACT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CGCAGAAGCCATCCCTGTATAAGTCAGGAGCAGAAAAGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	AGGCAAAAGAGATTGTAAAAAGATACGGAGGAAAGTT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GGGAGCGCCGGGAAGGGGATAACTAAGCTTTATCC
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GATATATGTCACAGATTCTCGGAGTAGACGTTCCCG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TCTCTGCTCTCATACAAAACAAAACAGATAGGGTTAT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TGGTTAAGCGGTGTTACTATGGATATTGGTGAAAAGA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CCGAGCCAATCGAGGAACTTTGTCGCACCTGTTCCT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	AGGGATAGTCCTGTGGGGGTTGCTGGGGCGGAACCGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TTTGCTTAATCACGATATCTTTTTTATTAATGCCC
GTTTCCATACCTCTAAGGAAGTATTGAAAC	AGTGGACATAAGACGTGTCGAACTTGTCTACGACAAAAGA
GTTTCCATACCTCTAAGGAAGTATTGAAAC

>NZ_CP003408|7|6|1320374-1321606|CRT
GTTTCCATACCTCTAGGGAAGTATTGAAAC	TCGGTGATATCCTTAAAGGTCGTGCCGTAAAGCGAGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TACAGGGCTGGCAGTACGAAGAGGTTATAGACGAAA
GTTTCCATACCTCTAAGGAATTATTGAAAC	ACGAGTGCAGACCAGATGGGAAAATAGTTGTTACCTT
GTTTCCATACCTCTAAGGAATTATTGAGAC	TGATAGAATGGCTTGGAATCTGGATTGATAAAATCCT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GGACGGTCAGTTTTTGAAATTACACACAGAAGGAGCTA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TCGAAAAAAGACGTCTTGTTTTTGAACAAGAGCGAG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	ACAACAACCGGCGACTAAAATTCCTCGCCGTATCAGG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CAGAGATTGTTTCAGTTGTTGTATCTGTGTAGAACT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CGCAGAAGCCATCCCTGTATAAGTCAGGAGCAGAAAAGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	AGGCAAAAGAGATTGTAAAAAGATACGGAGGAAAGTT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GGGAGCGCCGGGAAGGGGATAACTAAGCTTTATCC
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GATATATGTCACAGATTCTCGGAGTAGACGTTCCCG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TCTCTGCTCTCATACAAAACAAAACAGATAGGGTTAT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TGGTTAAGCGGTGTTACTATGGATATTGGTGAAAAGA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CCGAGCCAATCGAGGAACTTTGTCGCACCTGTTCCT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	AGGGATAGTCCTGTGGGGGTTGCTGGGGCGGAACCGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TTTGCTTAATCACGATATCTTTTTTATTAATGCCC
GTTTCCATACCTCTAAGGAAGTATTGAAAC	AGTGGACATAAGACGTGTCGAACTTGTCTACGACAAAAGA
GTTTCCATACCTCTAAGGAAGTATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003408.1\|WP_008194925.1\|1308260_1310624_+\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
NZ_CP003408.1\|WP_081501984.1\|1318154_1318673_+\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|223340
NZ_CP003408.1\|WP_008194966.1\|1328835_1329909_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349882
NZ_CP003408.1\|WP_008194954.1\|1324209_1325094_+\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
NZ_CP003408.1\|WP_008194944.1\|1318708_1320292_+\|bifunctional-aspartate-carbamoyltransferase-catalytic-subunit/aspartate-carbamoyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|237369
NZ_CP003408.1\|WP_010865351.1\|1330309_1330723_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003408.1\|WP_081502012.1\|1315924_1316773_+\|sulfide/dihydroorotate-dehydrogenase-like-FAD/NAD-binding-protein	unknown	unknown	gnl\|CDD\|235747
NZ_CP003408.1\|WP_008194957.1\|1325090_1325741_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NZ_CP003408.1\|WP_008194961.1\|1326459_1327665_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NZ_CP003408.1\|WP_008194934.1\|1314697_1315318_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224331
NZ_CP003408.1\|WP_004081866.1\|1329923_1330334_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NZ_CP003408.1\|WP_008194932.1\|1312146_1314705_+\|SMC-family-ATPase	unknown	unknown	gnl\|CDD\|223496
NZ_CP003408.1\|WP_008194958.1\|1325733_1326444_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-acetyltransferase	unknown	unknown	gnl\|CDD\|132571
NZ_CP003408.1\|WP_008194964.1\|1327674_1328835_+\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|273415
NZ_CP003408.1\|WP_008194952.1\|1323514_1324225_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|223331
NZ_CP003408.1\|WP_008194927.1\|1310620_1311007_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003408.1\|WP_008194940.1\|1316769_1318176_+\|NADPH-dependent-glutamate-synthase	unknown	unknown	gnl\|CDD\|183780
NZ_CP003408.1\|WP_008194936.1\|1315335_1315956_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP003408.1\|WP_081501983.1\|1310999_1312157_+\|exonuclease-SbcCD-subunit-D	unknown	unknown	gnl\|CDD\|223497
NZ_CP003408.1\|WP_081501986.1\|1322526_1323510_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845

Protein	Function_ID	Function_description	E-value
NZ_CP003408.1\|WP_008194925.1\|1308260_1310624_+\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP003408.1\|WP_081501984.1\|1318154_1318673_+\|dihydrofolate-reductase	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	2.16278e-38
NZ_CP003408.1\|WP_008194966.1\|1328835_1329909_+\|amidohydrolase	gnl\|CDD\|349882	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family. Peptidase M20 family, Aminoacylase 1 (ACY1; hippuricase; acylase I; amido acid deacylase; IAA-amino acid hydrolase; dehydropeptidase II; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14) subfamily. ACY1 is the most abundant of the aminoacylases, a class of zinc binding homodimeric enzymes involved in the hydrolysis of N-acetylated proteins. It is encoded by the aminoacylase 1 gene (Acy1) on chromosome 3p21 that comprises 15 exons. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity; substrates include indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). ACY1 appears to physically interact with Sphingosine kinase type 1 (SphK1) and may influence its physiological functions; SphK1 and its product sphingosine-1-phosphate have been shown to promote cell growth and inhibit apoptosis of tumor cells. Strong expression of the human gene and its mouse ortholog Acy1 in brain, liver, and kidney, suggest a role of the enzyme in amino acid metabolism of these organs. Defects in ACY1 are the cause of aminoacylase-1 deficiency (ACY1D), resulting in a metabolic disorder manifesting encephalopathy and psychomotor delay.	1.57944e-140
NZ_CP003408.1\|WP_008194954.1\|1324209_1325094_+\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	6.77214e-165
NZ_CP003408.1\|WP_008194944.1\|1318708_1320292_+\|bifunctional-aspartate-carbamoyltransferase-catalytic-subunit/aspartate-carbamoyltransferase-regulatory-subunit	gnl\|CDD\|237369	PRK13376, pyrB, bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional.	0
NZ_CP003408.1\|WP_081502012.1\|1315924_1316773_+\|sulfide/dihydroorotate-dehydrogenase-like-FAD/NAD-binding-protein	gnl\|CDD\|235747	PRK06222, PRK06222, sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein.	3.94836e-169
NZ_CP003408.1\|WP_008194957.1\|1325090_1325741_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	4.58272e-91
NZ_CP003408.1\|WP_008194961.1\|1326459_1327665_+\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NZ_CP003408.1\|WP_008194934.1\|1314697_1315318_+\|hypothetical-protein	gnl\|CDD\|224331	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion].	0.00455327
NZ_CP003408.1\|WP_004081866.1\|1329923_1330334_+\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	7.64994e-34
NZ_CP003408.1\|WP_008194932.1\|1312146_1314705_+\|SMC-family-ATPase	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	2.32065e-82
NZ_CP003408.1\|WP_008194958.1\|1325733_1326444_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-acetyltransferase	gnl\|CDD\|132571	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. This enzyme is part of the diaminopimelate pathway of lysine biosynthesis. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.	2.68767e-119
NZ_CP003408.1\|WP_008194964.1\|1327674_1328835_+\|diaminopimelate-decarboxylase	gnl\|CDD\|273415	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis. [Amino acid biosynthesis, Aspartate family].	0
NZ_CP003408.1\|WP_008194952.1\|1323514_1324225_+\|diaminopimelate-epimerase	gnl\|CDD\|223331	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism].	7.51385e-69
NZ_CP003408.1\|WP_008194940.1\|1316769_1318176_+\|NADPH-dependent-glutamate-synthase	gnl\|CDD\|183780	PRK12831, PRK12831, putative oxidoreductase; Provisional.	0
NZ_CP003408.1\|WP_008194936.1\|1315335_1315956_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.87126e-69
NZ_CP003408.1\|WP_081501983.1\|1310999_1312157_+\|exonuclease-SbcCD-subunit-D	gnl\|CDD\|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	4.75767e-65
NZ_CP003408.1\|WP_081501986.1\|1322526_1323510_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	2.87732e-153

>NZ_CP003408.1|WP_008194944.1|1318708_1320292_+|bifunctional-aspartate-carbamoyltransferase-catalytic-subunit/aspartate-carbamoyltransferase-regulatory-subunit
MKRDFLGRTLAVIEDLSVEEQMFLYEKTRELKQRWYSGEDVSDFRIKKRNVGIYIVFVEPSTRTKESFINAAKFHSGPNVKVNVFDSEHSSFNKQESYTDTFSMLTGYSDYSIFVVRTRLEGVCRLLERRISEFARRNGIEVPSFINAGDGKHEHPTQELLDEYTFLEQNGFDNSFIHVALVGDLLHGRTVHSKVNGLKIFKNVKVDLVAPEELMMPEHYVEKMKKNGFEVRIFSSIREYLSQKDVAKIWYFTRLQLERMGEDILEKVHILREAVTFKKEYLDALPEGVKFYHPLPRHKVYPTIPNFLDTLPLNGWETQARNGYWVRIVLLSMFGGALEAPFDTSKKEEKPEEDFIIPAPITHGSKGVQKEGKRGIKPIENGTVIDHIAKGKTPEEIYSTIVKIRKILKLYDVDSADGIFRSSDGNFKGYISLPDRYLSKREIKKLSAISPNTTVNIIKNSTVVEKYRIKLPPTIYGFEELRCKNENCITNPAHGENASPSFVRNEKGQFICEYCETPHSFEEIWSI
>NZ_CP003408.1|WP_081501984.1|1318154_1318673_+|dihydrofolate-reductase
MEPVAKVIFVLAMDVSGKIASSVEGWNSFEDRKNFREITTEIGNVVMGRVTFEEIGRPLPERLNVVLTRRRRSSDDPSLVFFNGSPGDVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDELFVTVEPYVFGKGIPFFDEFEGYFPLKLLEMRRLNERGTLFLKYSVEKSHR
>NZ_CP003408.1|WP_008194940.1|1316769_1318176_+|NADPH-dependent-glutamate-synthase
MKNRKTPMKEQSPESRRRNFEEVALGYTLEEAVAEAQRCLQCPTHPCVSGCPVGIDIPGFIRKLREGKLEESYSILKSYNNLPAVCGRVCPQEVQCESRCVVGKMKDSESVAIGRLERFVADWAAENLEEDVKPLAGLKKEKVAVVGSGPAGLTAAADLAKMGYHVDVFEAFHKPGGVLVYGIPEFRLPKRIVEREVNYIKKLGVNFYLNTVVGKTVKVKELLSEYDAVFIGTGAGTPKFMGIPGTNLNGVYSANEFLTRVNLMKAYLFPEYDTPIRVGKRVAVIGAGNTAMDAARSALRLGAEKVYIVYRRTEREMPARREEYHHALEEGIEFLWLTLPIRYVGDANGNVEAVECVRMELKEADGSGRPRPVPIEGSNFVLKVDMVIEAIGQGPNRVLLSEFPGLELNERGYIKADEDTGATSVKGVFAGGDIVTGAATVIKAMGAGKKAAQFIHSYLTGEWNPWQK
>NZ_CP003408.1|WP_081502012.1|1315924_1316773_+|sulfide/dihydroorotate-dehydrogenase-like-FAD/NAD-binding-protein
MGGAILNEIVKKTKIAEDVFDFWIHSPSVSKEAGPGQFVVIRLHEKGERIPLTVADTRPDEGLFRMVVKVVGKTTHELSLKKEGDTILDVVGPLGNPSEIENYGNVLLVGGGVGIATLYPIAKALKEAGNNITTVLGARTKDYLIMVDEFKEISDVLLVTDDGSAGMKGVVTDAMDKLFRERKFDICWAVGPTIMMKFCTLKAREFGVPIWVSLNPIMVDGTGMCGACRVTVSGQIKFACVDGPEFRGEEVDWDELLKRLAQYREQEKISYERFLKTAGESE
>NZ_CP003408.1|WP_008194936.1|1315335_1315956_+|ABC-transporter-ATP-binding-protein
MKKSYGKKKVLDGVSFSLEKGKSLGIVGQNSAGKTTLLKILATILKPDEGRLFLFEKNALKDLSYIRKRIAFVPEFPALLEELTVRENLLFFSRLRGVKMESFIVSELMLEPFMETFVRNASKGVKQRTALAVALFGNPELLILDEPTSGLDVESASIVRSKLKRLKEEGITVIISSHIREDIEELCDEILVINGESGGSNLERDR
>NZ_CP003408.1|WP_008194934.1|1314697_1315318_+|hypothetical-protein
MSDERRKKEELIERIVSEKGEEAFPKLLELLEDEDPEVKEIVSEVFYRLGDRAREFLFNEIQKRRERGFEKNDITNLYIIDILGDLGEKRMKNVLYELMEKYDSEEALLIIYEALAKIGEGEVFLPELEYLMFEDAYRKELCEQVAMVLANIPTERSLRILLKALKNKEFSEDQKEFFRRAVEMILYRKPELSKYVTDEERKELGL
>NZ_CP003408.1|WP_008194932.1|1312146_1314705_+|SMC-family-ATPase
MRPERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNGIRYSNSYDYVNRNAVDGTARLVFQFERGGKRYEIIREINALQRKHNAKLSEILENGKKAAIAAKPTSVKQEVEKILGIEHRTFIRTVFLPQGEIDKLLTSPPSEITEIISDVFQSKETLEKLEKLLKEKMKKLENGISSLQALYAASWKYLEENDLEVLKSELKTVSEKKKELLKKREELQKEEEQLKRLLEKYRELVKKKERLKVLSLRKNELQKEVVHEQKVKKAKELEPLFRELYLRQREFERLSQELNSREERYKELEKKKEAISKEIPVHRERLSKLEEMAENLNEELDLLEKVLKVSRPFLEQRIRLKENLTRLEEEIRRLVGEKEKREKELLSIEKTENETKDELEKLLGELSVLKKDHMKWLAYQIASSLNEGDTCPVCGGVFHGKMEAVEFNVDEFEKLDQKRSELENTLNVLKERKKSLSSLIEDFLMKIEEGKKNLKSIRNQIEKIDEELHRLGYSEDLEEKLDEKRKKLRKIEEERHSISQKITAAGVQISQIENQMEEIKEEIEAKRKTLKEQREEIDQLKRDFFDRLREIGIGFEEFRILVKEEVKDAEKELGIVETEIRLLEESLKELESENVRDVSEDYERVRNQLEALSQEISDFERKEGRLNHLIEETLRREQELKSLEKKLEELSDEYNNLDLLRKYLFDKSNFSRYFTGRVLEAVLKRTRAYLDILTNGRFDIDFDDEKGGFIIKDWGIERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDKEFSEAFDRKLRIMGGVVVNE
>NZ_CP003408.1|WP_081501983.1|1310999_1312157_+|exonuclease-SbcCD-subunit-D
MIDLKELKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPGNHDWKGLKLFGNFVTSISSDITFVMSFEPVDVEAKRGQKVRILPFPYPDESEALRKNEGDFRFFLESRLNKLYEEALKKEDFAIFMGHFTVEGLAGYAGIEQGREIIINRALIPSVVDYAALGHIHSFREIQKQPLTIYPGSLIRIDFGEEADEKGAVFVELKRGEPPRYERIDVVPLPLKTLYYKKIDTSALKSIRDFCRNFPGYVRVVYEEDSGILPDLMGEIDNLVKIERKSKREIEEVLRESPEEFKEELDKLDYFELFKEYLKKREENHEKLLKILDELLDEVKKSEA
>NZ_CP003408.1|WP_008194927.1|1310620_1311007_+|hypothetical-protein
MKRDIFYVIILTVFAVLFMLTYFSYRNLAVKLTRMEKTLKAYELYIFSDYENFENYVKKEGLKIEGMELLKEKKARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECRKKLVGD
>NZ_CP003408.1|WP_008194925.1|1308260_1310624_+|endopeptidase-La
MSKKSKDTEKSFKILEKYASQQEKELEIPDSLPCIPLRNGMGVFPNTVVPFYVGRTASLIALEEAMEKYNRLLLVVNQKDPSVETPEPEDLYKVGTVVKVLQIMKLPDDTFKVLVEGLERAQIEEFVSTDPFFLTKIKILKVKYRKTKKLEALMRSVKDKAVRYFNLTHRFPQETLVTLKEMQDPDKLADFVASILPVPLETKQELLETIHPLERLEKILSILVKEIEILEIEEEIEKKVKDRIEKTQREYVLREKLRAIKEELGVEEELEIKELYEKVEKGDYPDYVKEKAYKEIQRLEKMSPYSAEATVVRTYLDWLLNLPWSTATEDRLDIKEARKILDKNHYGLEEVKERILEYLVARKFSKNLKAPILCLVGPPGVGKTSLGRTIAEAMGRKFGRMSLGGLRDEAEIKGHRRTYVGALPGRIIQIIRRLGTKNPVILLDEVDKMGISFQGDPASALLEVLDPEQNKDFVDHYLEVPFDLSQVLFITTANVLHTIPPALRDRMEIIEIPGYSDPEKYHIARDYIIPKIAQAYGLSKVMFTPGAIKKIIREYTKEAGVRNLERVIEKVIRKSLVKGEKKSFKITTKDVEELLGPPVFREEEILEEDTVGAVTGLAWTPVGGSVLIVESLLVPGKGNLILTGNMGDVMKESARIALSVVRKMCGEECREVFEKNDIHIHVPEGAVPKDGPSAGITITVALYSAVTGKKVRRDVAMTGEITLRGKILPVGGIREKLLAAKRAGIKKVILPSRNRPDVEKIPKEYLNGMEIVYCSEIQEVLKEAIVR
>NZ_CP003408.1|WP_081501986.1|1322526_1323510_+|aspartate-semialdehyde-dehydrogenase
MKVRVGVVGATGEVGRTMVKVLEEFNVPVTELRLFASERSVGKEIEFKGEKFKVELLTEESMKWKCDYFLFSAGASVSRKFAPIAAENGVTVIDNSSAFRMEKEIPLVVPEVNAHLLKGYTGIIANPNCSTIQMILSIYKLHEVYGIEEIFVSTYQSVSGAGHKGIEELLAQERGENVMKVFPKPIHRNVIPLIGDIQENLFSQEEMKMVNETRKILNDYSIRVYPTTVRVPVLYGHSEAIMVRFKKPYESLEKVREVIASGEDVVVTDDLITPVDVAGKNETYVCRLRAADERSILFWNVADNIRVGAATNAVRILLKHAEMNGKV
>NZ_CP003408.1|WP_008194952.1|1323514_1324225_+|diaminopimelate-epimerase
MCYSANGNTFLIVDNTQKRIPEEKKPDFVRENVGDLDGVIFVELVDGKYFMDYYNRDGSMAAFCGNGARAFSQYLIDRGWIKEKEFTFLSRAGEIKVIVDDGIWVRMPGVSGKKEMKVDDYEGYFVVVGVPHFVLEVKGIDELDVEKLGRDLRYKTGANVDFYEVLSDRLKVRTYERGVERETKACGTGVTSVFVVYRDKTGAKEVKIQVPGGTLFLKEENGEIFLRGDVKRCSEE
>NZ_CP003408.1|WP_008194954.1|1324209_1325094_+|4-hydroxy-tetrahydrodipicolinate-synthase
MFRGVGTAIVTPFKNGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIKEANPDIDQIDRTVSLTKQARSDFMVWSGNDDRTFYLLCAGGDGVISVVSNVAPKQMVELCSEYFSGNLEKSREVHRKLRPLMKALFAETNPIPVKAALNLMGFIENELRLPLVPASEKTVELLRNVLKESGLL
>NZ_CP003408.1|WP_008194957.1|1325090_1325741_+|4-hydroxy-tetrahydrodipicolinate-reductase
MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGVEELDSPDVVIDFSSPEALPKTVELCKKYRAGLVLGTTALKEEHFQMLRELSKEVPVVQAYNFSIGINVLKRFLSELAKVLEDWDVEIVETHHRFKKDAPSGTAILLESALGKSVPIHSLRVGGVPGDHVVVFGNIGETIEIKHRAISRTVFAIGALKAAEFLVGKDPGIYSFEEVIFGGE
>NZ_CP003408.1|WP_008194958.1|1325733_1326444_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-acetyltransferase
MSELDAREIIEMIAKAKKKTPIVAYIKGDLAGIDFSSFKFFGDERFGILFGEYEDFKKLLEEHREKIEDYHLEVKARNSALPLADLTKYKARIEPGAIIRDMVEIGEGAVIMMGAVINVGAVIGEGTMIDMNAVVGGRAIIGKKCHIGAGAVIAGVIEPPSAKPVVIEDEVVVGANAVILEGVTVGKGAVVAAGAVVTKDVPPYTVVAGVPARVIKQIDEKTKEKTKIVDELRNLE
>NZ_CP003408.1|WP_008194961.1|1326459_1327665_+|aspartate-kinase
MNVVVQKYGGSSVATPERIKNVAQRIKKKVDEGYKVVVVVSAMGKTTDNLIRLAKEISPRPDSRELDMLLATGEQVSAALLSMALKDLGVKAKSLNAFQVKIKTTPHHTSARIVDIDDSVIRENLKDYDVLVVTGFQGVNEHGDLTTLGRGGSDTSAVALAAKLRVPCEIYSDVDGIYTCDPRVHPRAKKLAYITYDEALELTALGAKVLHSRSVEIAKKYGIPIYCASSFTEEEGTMVVERLPEWLEEPVVTGATISHGQIKVSISFLPKDVKYITAIFEEVGKRALNVDMISLVPSNGKVFLSFTILEDHKEDLDEALKEALRDVEGWKSTYEGGFAKLSIVGVGMRTSPGVAARFFEALERAGVTPELVTTSEIKISCLVPEEKAEKALKSVIEEFEL
>NZ_CP003408.1|WP_008194964.1|1327674_1328835_+|diaminopimelate-decarboxylase
MDILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFEGVDLLPTFAVKANNNPVLLKILREEGFGMDVVTKGELLAAKLAEVPSRSIVWNGNGKSRDQMEHFLREDVRIVNVDSFEEMEIWRELNPEGVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLEDLDSFMERFRSMNIRGLHVHIGSQITRVEPFVEAFSKVVRASERYGFEEINIGGGWGINYSGEELDLSSYREKVVPDLKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVLGKQGKEMRADVVGPLCESGDVIAYDRELPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVGENGRISLIRRRETEMDIFKDVVM
>NZ_CP003408.1|WP_008194966.1|1328835_1329909_+|amidohydrolase
MDEIELRHILHMNPELSFKEYRTKETLRKAVIEIGYEKIIEVAGTGLVIEKKETEDPYVVLRADMDALPIKEETGWEFASRNEYMHACGHDFHMSALYGAMKRLRNAKKNFLFVFQPAEETGGGAKEVVDFLKDKYEIKAAVGFHVTDEYDAGTVASRPGVLFASATEFDVYFKGVPAHVAFAEKGKDALKAAVSFLGWLYNKKWNALVGVGKISGGRARNIVPDEIKLEGTIRSEALRITEEVISNMVKQLGELKEEMGVDFAVERGSVYPEVKVDQNLFETLRETCQRLGFSFVECDMKWTGEDFGYFSQVFPSLSFWFGVGEGERFGLHHPRFLPNDRYIPMAADLLAELAMVI
>NZ_CP003408.1|WP_004081866.1|1329923_1330334_+|transcriptional-repressor
MTTEEIIERLKSKKVKLTTQRMEIIKFVSEMKEGHFEAKELFAILSKKVPSLSIATLYSVLYLLVDLGVIYAFSDGQKTIFDFNPEPHGHFICRECGKIEDVEIRELKLGEVKGKREKIELVIKGICEECLKKVKD
>NZ_CP003408.1|WP_010865351.1|1330309_1330723_+|hypothetical-protein
MFEEGERLRYLVQLFSLLLVIIGILGLVVWAGLYFLAPYIEGFAGIKLPENIANVLLACFLPILGSGILLNFYTSSGIKWFVVLGFVVLSVSFVSEIYGLYILRGIFSKIAPAYLIFLLFTMVSLAYFLTIIRRDED

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Crispr_ID: NZ_CP003408_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003408_8

1412394-1413630

Orphan

III-A

Consensus_repeat	Method
GTTTCAATAATTCCTTAGAGGTATGGAAAC	PILER-CR
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CRISPRCasFinder
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CRT

18 spacers

The CRISPR arrays of NZ_CP003408_8

>merge|NZ_CP003408|8|1412394-1413630|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATAATTCCTTAGAGGTATGGAAACAAACAATTTCAGGAATATTAGTCAAAAACAAAGGATTGTTTCAATAATTCCTTAGAGGTATGGAAACACTAGTGTGAGCCTGTGAGATATGAGGAAATCCACCTGGTTTCAATAATTCCTTAGAGGTATGGAAACTCGTATTGACTTTCGGATGACCAGTATACCCTGTAGCCGTTTCAATAATTCCTTAGAGGTATGGAAACGGTTTCCTTTTTCTGTTTTCACAATTCTTGCTTGCATGTTTCAATAATTCCTTAGAGGTATGGAAACGGTGTTCGAGAACGTAGTTCGTCGAAGAGCATGGAGGGTTTCAATAATTCCTTAGAGGTATGGAAACCTCTAACCAGCCCGCTCAAGAGAGCGGGCTTTATTTTGTTTCAATAATTCCTTAGAGGTATGGAAACTTCAGGAACGGAAAACGATACATCACCGAAATAAAGCTAGTTTCAATAATTCCTTAGAGGTATGGAAACTTCTCAATCCCCTCCTTCCGTTATATCGCATGGAGTGTTTCAATAATTCCTTAGAGGTATGGAAACCTTTCAGTTTCGCTTATCCAGTTCCGTTTTTCGTCTATGTTTCAATAATTCCTTAGAGGTATGGAAACAATATTTCTCACCTTCCTTTTCAACAACCGATATGTCGTTTCAATAATTCCTTAGAGGTATGGAAACCGCCTTTGCTTGACAAAAGTCTTTCTGAAGCAAAAGGTTTCAATAATTCCTTAGAGGTATGGAAACGAGTTTCCAGTAACTTTAACTCCATATATCGAGCTATGTTTCAATAATTCCTTAGAGGTATGGAAACTAAGCGGGATGTTTCCAGTACTTCAGCTCCCATGTCATGTTTCAATAATTCCTTAGAGGTATGGAAACACGAGTTTTGTGCCCGTTTTGTTCGGGCCGGTCCAGGTTTCAATAATTCCTTAGAGGTATGGAAACCTCGAGCTGTTCTGATACCACTTCTTTCTTATCTCTCGTTTCAATAATTCCTTAGAGGTATGGAAACGAATCAACAACAATTTCAAGCATTTTGATATCCGAGAGTTTCAATAATTCCTTAGAGGTATGGAAACCTACTTCGCAGCCGTGTATGGTAGAAAGCCGCAGCGGTTTCAATAATTCCTTAGAGGTATGGAAACATTCCGACGCCGGAGACATACCAATCGTGGTACATCGTTTCAATACATCCTTAGAAGCACAAAAAA

>NZ_CP003408|8|7|1412394-1413564|PILER-CR
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAACAATTTCAGGAATATTAGTCAAAAACAAAGGATT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ACTAGTGTGAGCCTGTGAGATATGAGGAAATCCACCTG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TCGTATTGACTTTCGGATGACCAGTATACCCTGTAGCC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GGTTTCCTTTTTCTGTTTTCACAATTCTTGCTTGCAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GGTGTTCGAGAACGTAGTTCGTCGAAGAGCATGGAGG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTCTAACCAGCCCGCTCAAGAGAGCGGGCTTTATTTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTCAGGAACGGAAAACGATACATCACCGAAATAAAGCTA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTCTCAATCCCCTCCTTCCGTTATATCGCATGGAGT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTTTCAGTTTCGCTTATCCAGTTCCGTTTTTCGTCTAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AATATTTCTCACCTTCCTTTTCAACAACCGATATGTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CGCCTTTGCTTGACAAAAGTCTTTCTGAAGCAAAAG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GAGTTTCCAGTAACTTTAACTCCATATATCGAGCTAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAAGCGGGATGTTTCCAGTACTTCAGCTCCCATGTCAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ACGAGTTTTGTGCCCGTTTTGTTCGGGCCGGTCCAG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTCGAGCTGTTCTGATACCACTTCTTTCTTATCTCTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GAATCAACAACAATTTCAAGCATTTTGATATCCGAGA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTACTTCGCAGCCGTGTATGGTAGAAAGCCGCAGCG
GTTTCAATAATTCCTTAGAGGTATGGAAAC

>NZ_CP003408|8|8|1412394-1413630|CRISPRCasFinder
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAACAATTTCAGGAATATTAGTCAAAAACAAAGGATT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ACTAGTGTGAGCCTGTGAGATATGAGGAAATCCACCTG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TCGTATTGACTTTCGGATGACCAGTATACCCTGTAGCC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GGTTTCCTTTTTCTGTTTTCACAATTCTTGCTTGCAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GGTGTTCGAGAACGTAGTTCGTCGAAGAGCATGGAGG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTCTAACCAGCCCGCTCAAGAGAGCGGGCTTTATTTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTCAGGAACGGAAAACGATACATCACCGAAATAAAGCTA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTCTCAATCCCCTCCTTCCGTTATATCGCATGGAGT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTTTCAGTTTCGCTTATCCAGTTCCGTTTTTCGTCTAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AATATTTCTCACCTTCCTTTTCAACAACCGATATGTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CGCCTTTGCTTGACAAAAGTCTTTCTGAAGCAAAAG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GAGTTTCCAGTAACTTTAACTCCATATATCGAGCTAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAAGCGGGATGTTTCCAGTACTTCAGCTCCCATGTCAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ACGAGTTTTGTGCCCGTTTTGTTCGGGCCGGTCCAG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTCGAGCTGTTCTGATACCACTTCTTTCTTATCTCTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GAATCAACAACAATTTCAAGCATTTTGATATCCGAGA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTACTTCGCAGCCGTGTATGGTAGAAAGCCGCAGCG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATTCCGACGCCGGAGACATACCAATCGTGGTACATC
GTTTCAATACATCCTTAGAAGCACAAAAAA

>NZ_CP003408|8|7|1412394-1413630|CRT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAACAATTTCAGGAATATTAGTCAAAAACAAAGGATT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ACTAGTGTGAGCCTGTGAGATATGAGGAAATCCACCTG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TCGTATTGACTTTCGGATGACCAGTATACCCTGTAGCC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GGTTTCCTTTTTCTGTTTTCACAATTCTTGCTTGCAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GGTGTTCGAGAACGTAGTTCGTCGAAGAGCATGGAGG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTCTAACCAGCCCGCTCAAGAGAGCGGGCTTTATTTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTCAGGAACGGAAAACGATACATCACCGAAATAAAGCTA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTCTCAATCCCCTCCTTCCGTTATATCGCATGGAGT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTTTCAGTTTCGCTTATCCAGTTCCGTTTTTCGTCTAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AATATTTCTCACCTTCCTTTTCAACAACCGATATGTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CGCCTTTGCTTGACAAAAGTCTTTCTGAAGCAAAAG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GAGTTTCCAGTAACTTTAACTCCATATATCGAGCTAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAAGCGGGATGTTTCCAGTACTTCAGCTCCCATGTCAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ACGAGTTTTGTGCCCGTTTTGTTCGGGCCGGTCCAG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTCGAGCTGTTCTGATACCACTTCTTTCTTATCTCTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GAATCAACAACAATTTCAAGCATTTTGATATCCGAGA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTACTTCGCAGCCGTGTATGGTAGAAAGCCGCAGCG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATTCCGACGCCGGAGACATACCAATCGTGGTACATC
GTTTCAATACATCCTTAGAAGCACAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003408.1\|WP_008195145.1\|1419301_1420114_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NZ_CP003408.1\|WP_008195138.1\|1416694_1417849_-\|alanine--glyoxylate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223153
NZ_CP003408.1\|WP_004081668.1\|1402180_1403320_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP003408.1\|WP_004081666.1\|1403306_1404872_-\|ferredoxin	unknown	unknown	gnl\|CDD\|226972
NZ_CP003408.1\|WP_008195133.1\|1415635_1415788_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003408.1\|WP_008195141.1\|1418053_1418611_+\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_CP003408.1\|WP_004081659.1\|1407261_1407879_+\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223632
NZ_CP003408.1\|WP_010865336.1\|1404864_1405098_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224817
NZ_CP003408.1\|WP_008195147.1\|1420110_1422702_+\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
NZ_CP003408.1\|WP_004081655.1\|1408639_1409596_+\|SufD-family-Fe-S-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|223791
NZ_CP003408.1\|WP_004081661.1\|1406542_1407268_+\|nucleotidyltransferase	unknown	unknown	gnl\|CDD\|224134
NZ_CP003408.1\|WP_008195136.1\|1415768_1416689_-\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240628
NZ_CP003408.1\|WP_004081662.1\|1405353_1406502_+\|inositol-3-phosphate-synthase	unknown	unknown	gnl\|CDD\|224180
NZ_CP003408.1\|WP_008195143.1\|1418607_1419309_+\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|173302
NZ_CP003408.1\|WP_004081632.1\|1414516_1415500_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213232
NZ_CP003408.1\|WP_010865335.1\|1407905_1408643_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223473
NZ_CP003408.1\|WP_004081649.1\|1410524_1411823_+\|glycoside-hydrolase-family-32-protein	unknown	unknown	gnl\|CDD\|224536
NZ_CP003408.1\|WP_008195131.1\|1413741_1414512_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|130314
NZ_CP003408.1\|WP_004081652.1\|1409752_1410523_+\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|223559
NZ_CP003408.1\|WP_008195149.1\|1422708_1423761_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP003408.1\|WP_008195145.1\|1419301_1420114_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	1.24338e-62
NZ_CP003408.1\|WP_008195138.1\|1416694_1417849_-\|alanine--glyoxylate-aminotransferase-family-protein	gnl\|CDD\|223153	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism].	0
NZ_CP003408.1\|WP_004081668.1\|1402180_1403320_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	4.41959e-08
NZ_CP003408.1\|WP_004081666.1\|1403306_1404872_-\|ferredoxin	gnl\|CDD\|226972	COG4624, COG4624, Iron only hydrogenase large subunit, C-terminal domain [General function prediction only].	1.86663e-98
NZ_CP003408.1\|WP_008195141.1\|1418053_1418611_+\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	7.73255e-89
NZ_CP003408.1\|WP_004081659.1\|1407261_1407879_+\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	1.7615e-17
NZ_CP003408.1\|WP_010865336.1\|1404864_1405098_-\|hypothetical-protein	gnl\|CDD\|224817	COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion].	4.78587e-24
NZ_CP003408.1\|WP_008195147.1\|1420110_1422702_+\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
NZ_CP003408.1\|WP_004081655.1\|1408639_1409596_+\|SufD-family-Fe-S-cluster-assembly-protein	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	5.79838e-71
NZ_CP003408.1\|WP_004081661.1\|1406542_1407268_+\|nucleotidyltransferase	gnl\|CDD\|224134	COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane].	4.74777e-35
NZ_CP003408.1\|WP_008195136.1\|1415768_1416689_-\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|240628	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains. Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.	6.59797e-160
NZ_CP003408.1\|WP_004081662.1\|1405353_1406502_+\|inositol-3-phosphate-synthase	gnl\|CDD\|224180	COG1260, INO1, Myo-inositol-1-phosphate synthase [Lipid metabolism].	6.56499e-158
NZ_CP003408.1\|WP_008195143.1\|1418607_1419309_+\|isoprenyl-transferase	gnl\|CDD\|173302	PRK14841, PRK14841, undecaprenyl pyrophosphate synthase; Provisional.	4.36269e-155
NZ_CP003408.1\|WP_004081632.1\|1414516_1415500_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213232	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein. DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	3.89493e-150
NZ_CP003408.1\|WP_010865335.1\|1407905_1408643_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	7.37296e-99
NZ_CP003408.1\|WP_004081649.1\|1410524_1411823_+\|glycoside-hydrolase-family-32-protein	gnl\|CDD\|224536	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism].	7.36092e-166
NZ_CP003408.1\|WP_008195131.1\|1413741_1414512_-\|ABC-transporter-permease	gnl\|CDD\|130314	TIGR01247, drrB, daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other].	5.54408e-88
NZ_CP003408.1\|WP_004081652.1\|1409752_1410523_+\|inositol-monophosphatase	gnl\|CDD\|223559	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism].	5.79825e-88

>NZ_CP003408.1|WP_004081649.1|1410524_1411823_+|glycoside-hydrolase-family-32-protein
MFKPNYHFFPITGWMNDPNGLIFWKGKYHMFYQYNPRKPEWGNICWGHAVSDDLVHWRHLPVALYPDDETHGVFSGSAVEKDGKMFLVYTYYRDPTHNKGEKETQCVAMSENGLDFVKYDGNPVISKPPEEGTHAFRDPKVNRSNGEWRMVLGSGKDEKIGRVLLYTSDDLFHWKYEGVIFEDETTKEIECPDLVRIGEKDILIYSITSTNSVLFSMGELKEGKLNVEKRGLLDHGTDFYAAQTFFGTDRVVVIGWLQSWLRTGLYPTKREGWNGVMSLPRELYVENNELKVKPVDELLALRKRKVFETAKSGTFLLDVKENSYEIVCEFSGEIELRMGNESEEVVITKSRDELIVDTTRSGVSGGEVRKSTVEDEATNRIRAFLDSCSVEFFFNDSIAFSFRIHPENVYNILSVKSNQVKLEVFELENIWL
>NZ_CP003408.1|WP_004081652.1|1409752_1410523_+|inositol-monophosphatase
MDRLDFSIKLLRKVGHLLMIHWGRVDNVEKKTGFKDIVTEIDREAQRMIVDEIRKFFPDENIMAEEGIFEKGDRLWIIDPIDGTINFVHGLPNFSISLAYVENGEVKLGVVHAPALNETLYAEEGSGAFFNGERIRVSENASLEECVGSTGSYVDFTGKFIERMEKRTRRIRILGSAALNAAYVGAGRVDFFVTWRINPWDIAAGLIIVKEAGGMVTDFSGKEANAFSKNFIFSNGLIHDEVVKVVNEVVEEIGGK
>NZ_CP003408.1|WP_004081655.1|1408639_1409596_+|SufD-family-Fe-S-cluster-assembly-protein
MIVKDYRREFEALAKAYEKAGGDVSKFLDRRIASIIISGDKVIGLNGVEGVELTPYRIENGVQVDMRIKEGVVVEYPVHVCTGYLEKKGLQRVVFNIRLEKNAKAIFVAHCVFPWTEDFTHDALMNVELEEGAWMEYHDEHTHSETGSINLITRSIARVGERAVYRNTFTLVKTRIGTLRVFMDASLEKDAVGELYTKVKAVEDDDVEVKEILRLNGMGARGLAKTNAVAIDRAKVSVVNEVYGNAPHTRGHVECLEIAKGDGVDVRALPVLVVKNDSSELTHEASIGRVNAKQLETLMAKGLTEEEATEMIIKGILT
>NZ_CP003408.1|WP_010865335.1|1407905_1408643_+|ABC-transporter-ATP-binding-protein
MNVLELIDVWYEVEGKAILKGINARFEKQRVYSILGTNGAGKSTLAYLIMGLEGYRPTRGKILLDGEDITDLSVTERAKRGITLMWQEPARFTGIKIRDYLTLGGRRKVSKEELERVLELVGLNPALYLERNVDEKLSGGERKRVELASILLMKPRYTILDEPDSGIDIMSLEMIEKVLSELVSAGGSVILVTHREEIALESDYAFLICHGSILKEGNPSEIVQFYKNSCDRCDHPNEPSGEMIV
>NZ_CP003408.1|WP_004081659.1|1407261_1407879_+|CDP-alcohol-phosphatidyltransferase-family-protein
MLRKSTDGWISSLINRRFSSRITNLILEKNWQITPNQMSFISFLVGVLAFPFYLLKLPWIAGILVQVSSVLDGVDGELARARNMSSNWGAFFDTMLDRFVDILAVLGLSLYGCLKDGPSLSLLLWSVLAVSGSLMVSYLHSVGKVFGTHPALVGKLSGFASRDVRLFVVFVFSLFGMHLPALVVISILSYVYTTGKFVELLVLNR
>NZ_CP003408.1|WP_004081661.1|1406542_1407268_+|nucleotidyltransferase
MREAIVLASGAGKRLRSVTGDVPKVFYRFDGCELVKYPMISLMKNGVERFVLVVSEGYRDLGEKVLNDLGVEGIVVENKKVELGNAYSFFLSEPYVESEKFFLSCGDSLFPPEALKSAFSEDEFHIKLGVSKRSDLIDPEEASKVLVNEDRIVKIGKRIDEYNYFDTGVFVMTKKVYSLKESFSWTEEISLYHVLQKAVDTGMIVKVFDFGNALWTEIDSPEDLNEKVYELMKKIKEGVAC
>NZ_CP003408.1|WP_004081662.1|1405353_1406502_+|inositol-3-phosphate-synthase
MVKVLILGQGYVASTFVAGLEKLRKGEIEPYGVPLARELPIGFEDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVDSLTSDPEIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKEWTELDPDVIVNTCTTEAFVPFGNKEDLLKAIENNDKERLTATQVYAYAAALYANKRGGAAFVNVIPTFIANDPAFVELAKENNLVVFGDDGATGATPFTADVLSHLAQRNRYVKDVAQFNIGGNMDFLALTDDGKNKSKEFTKSSIVKDILGYDAPHYIKPTGYLEPLGDKKFIAIHIEYVSFNGATDELMINGRINDSPALGGLLVDLVRLGKIALDRKEFGTVYPVNAFYMKNPGPAEEKNIPRIIAYEKMRIWAGLKPKWL
>NZ_CP003408.1|WP_010865336.1|1404864_1405098_-|hypothetical-protein
MDMIVRVCMGSSCHLKGSYEVVRRFQELQKKYNFKLYGSLCFGNCSQGVCVEIDGRLFSRVTPENAEEILKKVLQNG
>NZ_CP003408.1|WP_004081666.1|1403306_1404872_-|ferredoxin
MAELIFSRETDCRYCYKCLRNCPVKAISFKSGKSTVLEEECVFCGSCLDICPQNARSYRKDVERFLSLSEPFLVSIAPSFFAYFENPLKVIGVLKEMGAVVVQETAVGAEIVSRRYEEVFEKHSGPFITTACPVVVNLAEKHFPNVLKYFAPVDSPLMTHAKFLKTRYGDFPIVFVGPCIAKKSESDLVDVALTFEELEEILEEREGKEALPDGPYPDRARFYPTTDGIGYTVSVPWEKKLVVEGVENLMRVFSRIDEYKSVFIEASACYGSCLNGPVMKKKSNGKERLLEWQKKLPKEPKVNHLKIDTFRSYRNKSRNVEVPEEEIKKVLVSIGKDDPSKELNCGACGYDSCREKARAVVLGKAEKEMCFVYLLDLVKSSSYRVVEESPNAVFVLKDEKVIYRNRVAGELIQNYPEILERAKGSVGETLTIEGKRFFFVKEFSLEDGEEVIMLVDITQEKLKDEELDKVKRETLRKVEEMLNKQMRIAQEIAGILGESIAETKSSFMELKMFMEGENADL
>NZ_CP003408.1|WP_004081668.1|1402180_1403320_-|SpoIIE-family-protein-phosphatase
MLTCDVFFASKNKKGEEVCGDSIKVKRESEKIVVSVSDGLGSGIKASILSTLTATIASTMLMNGLPVTDVFRTILATLPICRVRKISYSNLCSVVCDFKNNTCTVVEYEFPVVMLFKGERRVFPEKQGLEIEGKKVFVWQFRSEAGTLLLLATDGLSQAGMGTDLFPLGFGVENIEKEMKHLLKNHVSPENIVRHFVKLAEKLDQEVRGDDTLVACLNFREKRILNLFVGPPEDRKKDEEYVRTFLSLPGKKIVCGGTTGQIFERVTGKKVEIDLYTLSENSPPVGYMEGIDLMTEGIVTLTQVFRYLEGQSEELGYGAKFIVKSLLEADEINFFVGRAINPAHQNPLFSHDISLKFRLVKDIAQILREKGKIVNVQYC
>NZ_CP003408.1|WP_008195131.1|1413741_1414512_-|ABC-transporter-permease
MAAFVTMIYRQFMRFLRSRSRVIGMIINPLIWIIFFGLGWSKVFDNPWAKMMFGGVDYLTYLAPGIFAMTVFNMSFISGVSLIWDKQFGFFKEVLVAPSSRRLSITGRIVGDAIVTVLQGLIILVLNYFLAESLKISGLLPALAVGFLMSVTIASFGIALALKMESTEGFQMIMMTLMMPLVFLSGAMYPIDSMPNWMKALAYINPLTYAVDASRGYLVGEKVMKFSFGLDWGILSILMLVGLILAMESFERARIS
>NZ_CP003408.1|WP_004081632.1|1414516_1415500_-|ATP-binding-cassette-domain-containing-protein
MEDIIVVENLVKKFGDFEAVKGVSFSVKKGEIFAFLGPNGAGKTTTIHMLTTLLKPTSGKAWVAGHDVLKEPREVRRKIGIVFQDQSLDRELTAYENMYIHGKIYGYGGEKLKKRILELLEFVELLEFKDKPVKTFSGGMARRLEIARSLIHEPEVLFLDEPTIGLDPHTRAHMWEYISKMKKEHNMTIFLTTHYMDEAEQLADRVAIIDHGKIIALGTPTELKRMVGKEIIYVRFSEAVECLEGDFIESCRKLPDGRLELNVEDSGRAIPKIFELAQQKGLKIEEITYHKPTLNDVFLHLTGRELREEGPENSFKTMARMRMRMRR
>NZ_CP003408.1|WP_008195133.1|1415635_1415788_+|hypothetical-protein
MERVRDFFVLLFCVLLFIYEFLALNIRIMFRSIKKKRSRETTPGFKFPVL
>NZ_CP003408.1|WP_008195136.1|1415768_1416689_-|2-hydroxyacid-dehydrogenase
MTRYRVHVNDPLDKEATQLLMNKEELEVTSEHLEKDELMKIIPEVDVLVVRSATKVTADIIEAGKNLKIIARAGIGLDNIDVQKAKEKGIKVLNTPGASAPSVAELAMGLMLACARHIARATISLKEGKWEKKALKGKELLGKTLGLIGFGNIGQEVAKRALAFGMKIIAYDPAKPETDLPVEYVDLDTLFKESDFISLHVPLTESTRHIINRESIAKMKDGVIIVNTARGGTIDEEALYEALVSGKVYAAGLDVFEVEPPTDEIRRKLLSLDNVVATPHIGASTAEAQRRVGIELVEKIFKELGI
>NZ_CP003408.1|WP_008195138.1|1416694_1417849_-|alanine--glyoxylate-aminotransferase-family-protein
MGKFLKKHYIMAPGPTPVPNDILTEGAKETIHHRTPQFVSIMEETLESAKYIFQTKNNVYAFASTGTGAMEAAVANLVSPGDKVIVVVAGKFGERWKELCQAYGADIVEIALEWGDAVTPEQIEEALNKNPDAKVVFTTYSETSTGTVIDLEGIARVTKEKDVVLVTDAVSALGAEPLKMDEWGVDVVVTGSQKGLMLPPGLALISLNDKAWELVEKSRSPRYYFDLRAYRKSYPDNPYTPAVNMIYMLRKALQMIKEEGIENVWERHRILGDATRAAVKALGLELLSKRPGNVVTAVKVPEGIDGKQIPKIMRDKYGVTIAGGQAKLKGKIFRIAHLGYMSPFDTITAISALELTLKELGYEFELGVGVKAAEAVFAKEFIGE
>NZ_CP003408.1|WP_008195141.1|1418053_1418611_+|ribosome-recycling-factor
MVNPFIKEAKEKMRRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEEIMEF
>NZ_CP003408.1|WP_008195143.1|1418607_1419309_+|isoprenyl-transferase
MRIPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDREMELLRRERVRVRILGRKEGLPERVLKKWQEVEEKTKEFDRMTLIIAFNYGGRREILDAVEFILKDVSHGKKLELTEETFRQYLYLPDVPDPDLIIRTSGEMRLSNFLLWQSAYSELYFFKKLWPDFTKRDFLRAIESYSKRERRFGGLSNG
>NZ_CP003408.1|WP_008195145.1|1419301_1420114_+|phosphatidate-cytidylyltransferase
MDDLKTRVITASVVAPFVVLCFVSYESLIGLVSAIVILAGYELITLEMKERDARFFYVILLALYPVLYGLVFEEPAQPLSILFITGVFFSLITDKDPSQVFKTIAAFSIALIYVTFFLSFFLPIYRDFGAANALLVLTSTWVFDSFAYFTGLKFGRTRISPRYSPRKSLEGVIGGFLGVVIYTFLYRLVVNDLLSVNVISFRTFLPFAATVAVMDTFGDIFESALKRHYGVKDSGKTLPGHGGMLDRIDGLLFVAPVSYIVFKILEGVVR
>NZ_CP003408.1|WP_008195147.1|1420110_1422702_+|alanine--tRNA-ligase
MRYMTSEEIREAFLKFFEKKGHKILPSASLIPDDPQLLFTVAGMVPFKPIFWGKVEPVYTRVATCQKCLRTVDIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVPEEKLWVSVYEEDEEAFRIWNEKIGLPEKKILRMGKEDNFWGPAGPTGPCGPDTEIFYDTGYLKGCPEGEECTPANSEGRFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAMMQGVYSNFDTDLFQPIINRIEELTGVGYKTDEEKDVSIRVIADHIRAITFLISEGVFPSNEGRGYVLRRIIRRAMRHGILLGMSEPFLYRIVDAVVEKMGRVYPEIVRGEGMVKEVLSAEENRFLKTLEQGMKVFDEIVEKKGKIDSEDAFRLYDTYGLPLELTLEIAKEKGVEVDVQEFNKYMEEQQRKSRAAMGDVEFARRYEYLEKLPKDFRTEFTGYEKLEDEGEVVLIARDDETVEEASEGTVEVVFSRTPFYAEKGGQVSDTGTVKWKDGKALVEYVFEASEGVIVHRIKILDGTLRRGQKVILRVDKKRREATMRNHTATHLLHAALKKVLGDHVRQAGSLVAPDRLRFDFTHFKGLSSAEIEQVEDLVNEWIMEAIPVEVRYTSYEEAVKSGVVALFTEKYGDVVRVVEVPGVSKELCGGTHVKNTGQIGLFKIISEESVSSGVRRIEAVTGFSALELLRNQKKLIDQLKEILGAREDELTGRVLSLREKVKELEKKLSQGRISEERIAMKQLEDGVKVFHGVFEGVEAKHLGGIADNVLKKEGEGIVILFSKFENKVSLVVKVSENLLGKYDASSIARNIAKELGGNGGGRKNFAQAGGRHPERIKDVLERLEEFLR
>NZ_CP003408.1|WP_008195149.1|1422708_1423761_+|hypothetical-protein
MELVVDAHELKEWVYLLDKLVGTTEPTARFLSFFYRDGLWVSASDNCAKVEVFLGEIPRFEGSRIVSLDLVKYFLSDVKVSDVRITVLQERLVLKAGNEVLDVRCKTGEIPPGNGEEEFLCTLTKREFEGALNFASSNLDEGEFLILLFEEKDVLMFGASAGIMTLAQISTIPKKPFSTKIPYVTVRHIFKALQRLDVQTLDFYEKSGKLVVKYPHFVMEVCGDEVSEEEIKKLKSLLEEKTAERIEARRQVLAKLVRKAAVLSRGDYATISRRGESLKVQVKRKNLSYTAELFVESGRDFVVVFPSKKLRSALARMDTERIFLEITERFLKISNFSGTRVIYLELEEFF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP003408_6	6.16\|1207036\|36\|NZ_CP003408\|PILER-CR,CRISPRCasFinder,CRT	1207036-1207071	36	MK814759	Gordonia phage Reyja, complete genome	9095-9130	8	0.778
NZ_CP003408_5	5.2\|1065155\|37\|NZ_CP003408\|PILER-CR,CRISPRCasFinder,CRT	1065155-1065191	37	NC_002575	Agrobacterium rhizogenes plasmid pRi1724 DNA, complete sequence	92280-92316	9	0.757
NZ_CP003408_5	5.2\|1065155\|37\|NZ_CP003408\|PILER-CR,CRISPRCasFinder,CRT	1065155-1065191	37	NZ_KY000038	Agrobacterium rhizogenes strain 1724 plasmid pRi_1724, complete sequence	139600-139636	9	0.757
NZ_CP003408_5	5.12\|1065821\|37\|NZ_CP003408\|CRISPRCasFinder,CRT	1065821-1065857	37	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	996115-996151	9	0.757
NZ_CP003408_5	5.12\|1065821\|37\|NZ_CP003408\|CRISPRCasFinder,CRT	1065821-1065857	37	NZ_CP010858	Marinovum algicola DG 898 plasmid pMaD3	115273-115309	10	0.73

1. spacer 6.16|1207036|36|NZ_CP003408|PILER-CR,CRISPRCasFinder,CRT matches to MK814759 (Gordonia phage Reyja, complete genome) position: , mismatch: 8, identity: 0.778

acaacaacctcgacaccgacgactacaggcttgacg---	CRISPR spacer
acatcaacctcgacgccgacgactac---tccgacgggt	Protospacer
*** **********.***********   ...****

2. spacer 5.2|1065155|37|NZ_CP003408|PILER-CR,CRISPRCasFinder,CRT matches to NC_002575 (Agrobacterium rhizogenes plasmid pRi1724 DNA, complete sequence) position: , mismatch: 9, identity: 0.757

tagccgacgacgtcgagatccccaacaactcgtactc-	CRISPR spacer
acgccgccgacgtcgagatcctcaacaa-gcatatccg	Protospacer
  **** **************.******  *.**..*

3. spacer 5.2|1065155|37|NZ_CP003408|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY000038 (Agrobacterium rhizogenes strain 1724 plasmid pRi_1724, complete sequence) position: , mismatch: 9, identity: 0.757

tagccgacgacgtcgagatccccaacaactcgtactc-	CRISPR spacer
acgccgccgacgtcgagatcctcaacaa-gcatatccg	Protospacer
  **** **************.******  *.**..*

4. spacer 5.12|1065821|37|NZ_CP003408|CRISPRCasFinder,CRT matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 9, identity: 0.757

gcgcccgccagcgccagcgccagcatgccaaaaacaa-	CRISPR spacer
ccgcgcgccagcgccagcgccaccatg-cagacgcggt	Protospacer
 *** ***************** **** **.* .*..

5. spacer 5.12|1065821|37|NZ_CP003408|CRISPRCasFinder,CRT matches to NZ_CP010858 (Marinovum algicola DG 898 plasmid pMaD3) position: , mismatch: 10, identity: 0.73

gcgcccgccagcgccagcgccagcatgccaaaaacaa	CRISPR spacer
accaccgccagcgccagcgccggcatggcaagatgcg	Protospacer
.*  *****************.***** ***.*   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1038980 : 1046923

Staphylococcus_phage(37.5%)

protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008194358.1\|1038980_1039370_+\|transposase	IS200/IS605 family transposase	W0UUZ0	Sulfolobus_monocaudavirus	8.4e-38	56.8
WP_008194360.1\|1039354_1040563_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1C9EG34	Acidianus_two-tailed_virus	3.2e-11	27.4
WP_008194362.1\|1040547_1040865_+	GGDEF domain-containing protein	G3MA91	Bacillus_virus	2.6e-05	32.2
WP_008194364.1\|1041113_1042160_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	6.0e-54	37.8
WP_008194366.1\|1042144_1042717_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	5.1e-23	36.0
WP_008194367.1\|1042691_1043858_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	6.8e-67	37.6
WP_008194369.1\|1043854_1044352_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-30	45.3
WP_081501958.1\|1044320_1045136_+	hypothetical protein	NA	NA	NA	NA
WP_008194373.1\|1045148_1046000_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_008194376.1\|1045996_1046923_-\|protease	FtsH protease activity modulator HflK	S4VT23	Pandoravirus	4.0e-09	26.5

DBSCAN-SWA_2

1187012 : 1194625

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008194672.1\|1187012_1187792_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.8e-23	33.0
WP_008194674.1\|1187751_1188495_+	5'/3'-nucleotidase SurE	NA	NA	NA	NA
WP_008194676.1\|1188494_1188989_+	peptide deformylase	A0A067XQZ3	Caulobacter_phage	3.1e-21	44.7
WP_008194678.1\|1189002_1189974_+	M23 family metallopeptidase	D7RWE0	Brochothrix_phage	1.7e-07	31.6
WP_008194680.1\|1189978_1190305_+	hypothetical protein	NA	NA	NA	NA
WP_008194682.1\|1190378_1191566_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	8.9e-139	65.8
WP_008194684.1\|1191581_1191872_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_081501972.1\|1191934_1192603_+	hypothetical protein	NA	NA	NA	NA
WP_008194689.1\|1192663_1193383_+	response regulator transcription factor	W8CYM9	Bacillus_phage	7.2e-43	43.2
WP_008194692.1\|1193386_1194625_+	PAS domain-containing protein	W8CYF6	Bacillus_phage	2.5e-35	36.7

DBSCAN-SWA_3

1525062 : 1542980

Bacillus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004079999.1\|1525062_1525818_+	phosphate ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	5.5e-17	28.4
WP_008195373.1\|1525832_1526531_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_081502002.1\|1526496_1527186_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.7e-28	32.6
WP_038051043.1\|1527166_1528126_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	2.9e-15	28.3
WP_008195379.1\|1528118_1529951_-	ATP-binding protein	A0A139ZPI2	Marinitoga_camini_virus	1.4e-29	28.5
WP_008195382.1\|1529957_1531691_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	7.3e-41	26.8
WP_008195383.1\|1531665_1532799_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_008195384.1\|1532905_1533556_+	HAD family phosphatase	A0A1D8KNV9	Synechococcus_phage	1.1e-10	26.4
WP_008195386.1\|1533539_1535270_-	NAD+ synthase	A0A2L0UZF5	Agrobacterium_phage	1.7e-90	35.4
WP_008195387.1\|1535235_1535811_-	hypothetical protein	NA	NA	NA	NA
WP_008195390.1\|1535813_1536749_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3HQK7	Synechococcus_phage	4.8e-39	34.7
WP_081502003.1\|1536745_1537948_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_008195395.1\|1537951_1539310_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	Q58MG4	Prochlorococcus_phage	5.2e-42	37.9
WP_038051046.1\|1539290_1539908_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.2e-25	39.0
WP_008195398.1\|1539868_1541164_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.0e-47	33.0
WP_081502004.1\|1541168_1542980_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	8.1e-91	37.1

DBSCAN-SWA_4

1680413 : 1689132

Powai_lake_megavirus(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008195672.1\|1680413_1681136_-	ribonuclease III	A0A167RGU4	Powai_lake_megavirus	3.1e-17	26.9
WP_010865263.1\|1681122_1681692_-	phosphodiesterase	NA	NA	NA	NA
WP_008195674.1\|1681688_1682789_-	ABC transporter permease	NA	NA	NA	NA
WP_004080341.1\|1682781_1683375_-	dTMP kinase	M1PSC7	Streptococcus_phage	1.3e-34	43.3
WP_008195679.1\|1683196_1683949_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_008195681.1\|1683958_1684900_-	ornithine carbamoyltransferase	M1I6M4	Paramecium_bursaria_Chlorella_virus	1.1e-22	29.7
WP_004080356.1\|1684903_1686097_-	adenylosuccinate synthase	L7Y4J5	Megavirus	1.1e-51	33.5
WP_008195684.1\|1686102_1687398_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	3.8e-18	28.2
WP_008195686.1\|1687812_1689132_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	9.5e-49	27.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP003408

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection