CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP006903	Clostridium botulinum 202F chromosome, complete genome	4 crisprs	RT,DEDDh,csa3,WYL,csx1,cas3	1	0	12	0
NZ_CP006904	Clostridium botulinum 202F plasmid pCBI, complete sequence	0 crisprs	NA	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP006903_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006903_1

772844-772927

Orphan

Consensus_repeat	Method
TATAAAGGGAGCATATCATTTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006903_1

>merge|NZ_CP006903|1|772844-772927|CRISPRCasFinder
TATAAAGGGAGCATATCATTTAAAAAATTCCAAGTGGGATAGAGAATTAGCTAAGCAAAATATAAAGGGAGCATATCATTTAAA

>NZ_CP006903|1|1|772844-772927|CRISPRCasFinder
TATAAAGGGAGCATATCATTTAAA	AAATTCCAAGTGGGATAGAGAATTAGCTAAGCAAAA
TATAAAGGGAGCATATCATTTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006903.1\|WP_035791845.1\|766181_767099_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP006903.1\|WP_035787008.1\|781130_781352_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP006903.1\|WP_035791853.1\|772980_773736_-\|DUF438-domain-containing-protein	unknown	unknown	gnl\|CDD\|225301
NZ_CP006903.1\|WP_035791859.1\|776015_776432_-\|flavodoxin	unknown	unknown	gnl\|CDD\|235508
NZ_CP006903.1\|WP_012424089.1\|769136_769958_-\|phosphoenolpyruvate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|378168
NZ_CP006903.1\|WP_035791837.1\|760430_762278_-\|glycoside-hydrolase-family-13-protein	unknown	unknown	gnl\|CDD\|200477
NZ_CP006903.1\|WP_080315394.1\|781354_781531_-\|aspartyl-phosphate-phosphatase-Spo0E-family-protein	unknown	unknown	gnl\|CDD\|378175
NZ_CP006903.1\|WP_035787031.1\|768463_768880_-\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|376605
NZ_CP006903.1\|WP_039308112.1\|780753_780945_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006903.1\|WP_035791851.1\|771416_772604_-\|phosphoenolpyruvate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|378168
NZ_CP006903.1\|WP_035791849.1\|770061_771270_-\|Tm-1-like-ATP-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|377709
NZ_CP006903.1\|WP_035791847.1\|767315_768239_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006903.1\|WP_035791857.1\|774710_775424_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP006903.1\|WP_035791855.1\|773764_774475_-\|iron-sulfur-cluster-repair-di-iron-protein	unknown	unknown	gnl\|CDD\|274701
NZ_CP006903.1\|WP_035791840.1\|762366_763641_-\|maltose-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270304
NZ_CP006903.1\|WP_039308107.1\|776523_777984_-\|NADP-dependent-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|143401
NZ_CP006903.1\|WP_035791863.1\|778035_778806_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|99781
NZ_CP006903.1\|WP_012423257.1\|763666_764491_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226354
NZ_CP006903.1\|WP_012424809.1\|764505_765843_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP006903.1\|WP_012424131.1\|779225_779387_-\|rubredoxin	unknown	unknown	gnl\|CDD\|366011

Protein	Function_ID	Function_description	E-value
NZ_CP006903.1\|WP_035791845.1\|766181_767099_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	3.54616e-36
NZ_CP006903.1\|WP_035787008.1\|781130_781352_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	6.57176e-16
NZ_CP006903.1\|WP_035791853.1\|772980_773736_-\|DUF438-domain-containing-protein	gnl\|CDD\|225301	COG2461, COG2461, Uncharacterized conserved protein [Function unknown].	2.06621e-34
NZ_CP006903.1\|WP_035791859.1\|776015_776432_-\|flavodoxin	gnl\|CDD\|235508	PRK05568, PRK05568, flavodoxin; Provisional.	2.00267e-54
NZ_CP006903.1\|WP_012424089.1\|769136_769958_-\|phosphoenolpyruvate-hydrolase-family-protein	gnl\|CDD\|378168	pfam09370, PEP_hydrolase, Phosphoenolpyruvate hydrolase-like. This domain has a TIM barrel fold related to IGPS and to phosphoenolpyruvate mutase/aldolase/carboxylase.	0
NZ_CP006903.1\|WP_035791837.1\|760430_762278_-\|glycoside-hydrolase-family-13-protein	gnl\|CDD\|200477	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins. Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP006903.1\|WP_080315394.1\|781354_781531_-\|aspartyl-phosphate-phosphatase-Spo0E-family-protein	gnl\|CDD\|378175	pfam09388, SpoOE-like, Spo0E like sporulation regulatory protein. Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure.	3.64779e-07
NZ_CP006903.1\|WP_035787031.1\|768463_768880_-\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|376605	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL.	1.40197e-44
NZ_CP006903.1\|WP_035791851.1\|771416_772604_-\|phosphoenolpyruvate-hydrolase-family-protein	gnl\|CDD\|378168	pfam09370, PEP_hydrolase, Phosphoenolpyruvate hydrolase-like. This domain has a TIM barrel fold related to IGPS and to phosphoenolpyruvate mutase/aldolase/carboxylase.	1.08377e-153
NZ_CP006903.1\|WP_035791849.1\|770061_771270_-\|Tm-1-like-ATP-binding-domain-containing-protein	gnl\|CDD\|377709	pfam06792, UPF0261, Uncharacterized protein family (UPF0261).	0
NZ_CP006903.1\|WP_035791857.1\|774710_775424_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.14904e-47
NZ_CP006903.1\|WP_035791855.1\|773764_774475_-\|iron-sulfur-cluster-repair-di-iron-protein	gnl\|CDD\|274701	TIGR03652, FeS_repair_RIC, iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	3.20764e-101
NZ_CP006903.1\|WP_035791840.1\|762366_763641_-\|maltose-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270304	cd13586, PBP2_Maltose_binding_like, The periplasmic-binding component of ABC transport systems specific for maltose and related polysaccharides; possess type 2 periplasmic binding fold. This subfamily represents the periplasmic binding component of ABC transport systems involved in uptake of polysaccharides including maltose, maltodextrin, and cyclodextrin. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.14243e-106
NZ_CP006903.1\|WP_039308107.1\|776523_777984_-\|NADP-dependent-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|143401	cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11. NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9) catalyzes the irreversible oxidation of glyceraldehyde 3-phosphate to 3-phosphoglycerate generating NADPH for biosynthetic reactions. This CD also includes the Arabidopsis thaliana osmotic-stress-inducible ALDH family 11, ALDH11A3 and similar sequences. In autotrophic eukaryotes, NP-GAPDH generates NADPH for biosynthetic processes from photosynthetic glyceraldehyde-3-phosphate exported from the chloroplast and catalyzes one of the classic glycolytic bypass reactions unique to plants.	0
NZ_CP006903.1\|WP_035791863.1\|778035_778806_-\|oxidoreductase	gnl\|CDD\|99781	cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.	2.80423e-106
NZ_CP006903.1\|WP_012423257.1\|763666_764491_-\|sugar-ABC-transporter-permease	gnl\|CDD\|226354	COG3833, MalG, ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism].	6.87604e-91
NZ_CP006903.1\|WP_012424809.1\|764505_765843_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	3.94929e-63
NZ_CP006903.1\|WP_012424131.1\|779225_779387_-\|rubredoxin	gnl\|CDD\|366011	pfam00301, Rubredoxin, Rubredoxin.	1.17683e-21

>NZ_CP006903.1|WP_035791851.1|771416_772604_-|phosphoenolpyruvate-hydrolase-family-protein
MVLREEIIKNLNLQIKINSHIIGVATGAGVTAKYAQRGGADLVLTLNSGRFRQMGRSSLAGILPFANSNDMVMEFALREVVPLIKDIPVIFGLNATDPTIDLEEYIDDIKNKGFSGINNYPTVGIIDGIFGEVLEEEGCSYKLEVEAIKIAHKKNLFTIAFVFSKEQAKDMLDAGADVICVHLGLTGGGMLGAKKILSLEAAKEKAKLIFDLCDKIRPNVIKMIYGGPIKTPVDVQYMYNNCNTMGYIGGSAFERIPTEKYITNITREFKYSGNLEKDDFLNKMLDGITKHYDYVEFVKEYVSKNYMNNISFLELAMVANISRTHLSSLFKKEVGCSFPQYLVKFRMNKATEIIKKENIQLSEVAELVGYDDYAHFSKMFKKYIGKSPKIYREST
>NZ_CP006903.1|WP_035791849.1|770061_771270_-|Tm-1-like-ATP-binding-domain-containing-protein
MKTIAIAGTFDSKGVEYLYVKKLIKSIGLKTFTIHTGVFEPKFKPDVSNQEVARAVDEDIYEIAAKKDRALATEILSKGMEKLVPKLYEQGKFDGIISFGGTGGTSLITPAMRALPIGVPKVMVSTVASGNTEQYVGSSDIVMVPSIVDVAGLNSISTKIFANAVFAIAGMVNFENKEIIEKKPLVAATMFGVTTPCVNYARKYLEERGYEVLVFHATGIGGKSMEHLIKGGFIKGVLDLTTTEWCDELVGGVLGAGKNRLEAAGKNNIPQVVSVGALDMVNFGPIDTVPKKFEGRNFYKHNPTVTLMRTTVEENKIIGEKIAEKLNMATGKTALFLPLKGVSMLDEKGQKFYGEEEDKMLFDTLKNCINKDVVEIEELNLAINDKEFGEAAAKKLIDLMNK
>NZ_CP006903.1|WP_012424089.1|769136_769958_-|phosphoenolpyruvate-hydrolase-family-protein
MKRVEIIKKFKEEIAKGNSLLGVGAGTGITAKSSEAGGADMLIIYNSGKYRMAGRGSLAGLLSYGDANQIVVEMGAEVLPVVKHTPVLAGVCGTDPFRLMEVYLKQLKEQGFSGVQNFPTVGLIDGVFRQNLEETGMGYDLEVEMIRKAHELDMLTTPYVFDPDQAKAMAEAGADILVAHMGLTTKGTIGAKTALTLDDCVEKIEAIIKAGRAVNPDIMVICHGGPIAEPDDAAYVIEKTEGIDGFFGASSIERFAAERGIKSQAEAFKSIKK
>NZ_CP006903.1|WP_035787031.1|768463_768880_-|large-conductance-mechanosensitive-channel-protein-MscL
MKKFLNEFKQFALKGSVIDLAVGVLIGGAFQGIVKSLTNDIISPIIGIFANKDFNDLTLEFFGVNIKYGSFITAVINFLIMAFLIFLLVKGMNKLSELGRRNKVEEVKEPTIKECPFCYSEIDIKATRCPKCTSQLDE
>NZ_CP006903.1|WP_035791847.1|767315_768239_+|hypothetical-protein
MFFFEAQPFTNWIMLLIVFLALIVLNELGRRFKWGGVLLFIILPLFLTFFVWPKTTKGTSVNDWFHYAKVYSALAGCIGFFLIRHLKGASSKKWALCFPPLILAINICEAVARDFQIYGLHLNKEVFEGMVTLSGSWNVMNGIAGILNIITITGWFGICISKDKSKDMLWPDMLWFWIIAYDIWNFAYTYNCLPNHAWYCGIALLLAPTIAAFFIKKGAWLQHRAQTLALWCMFAMTCPGFIDESQFAVRSSHNSTALFIVSLVALLSNIAVFVYYIYKIKKTKHNPIKGELYTDLNSYKEIKTLSE
>NZ_CP006903.1|WP_035791845.1|766181_767099_-|LacI-family-DNA-binding-transcriptional-regulator
MTNRKVTLKDIAKEANVSPATVSYVLNYSEKEKISHETRLKVFEAARKLNYVPNMTARSLASQKSYLIGVIINLSEKNRKSKIYGQYNLVKEIQKKLYSIGYDLIFLPTKELQKDIQISQKRCLDAVFIIDMPSDQLKEIVNHFYVPVIFIDSYLDDPIFNKVLTDYEAIFNMLSEQLEKEFYVVIEDYSNDELLKIVRKKVLEKNIFINKFDNDLIEFLHRNQNKKGIIFGEILGMQAEKIVDNRNLVVVINSENDIMLLPDTKRIIVSDKEKAKKAVEIMEKLIYLENDKDIEKTSYIKPIEY
>NZ_CP006903.1|WP_012424809.1|764505_765843_-|sugar-ABC-transporter-permease
MKGKKSLLLSCFFWGSGQFFICKQKIKGLIFFAMQLLFIGIELYSGFWIECGQGLIPNFTIRLHGGFFTKGIWGLITLGKKVGGKYGDHSSMLLINGVIASILIAIFILIYVWNLKDAYNTGKNIDNTKTYITSKEFFKNLYSTRFPYIILTPIAIVFIFVVIMPILFSILTAFLNYNRDHLPPGNLLSWVGFENFKKLFTVPIWSKTFFKVLIWNIIWTFVSTFSSYFLGVFQALILNNKSVKCKKVFRTILILPWAIPPIISLMVFRNLLNGQFGPVNQILINMGIISEKIPFLSDPILAKIMVILVNLWVSFPMFMVMILGVLSNVDNSLYDAAAIDGASKIQVFKKITMPLIFLATTPNLIMSLAGNFNAFGAIYFLTQGGPLNSELQFAGDTDILISWIYKLTLNQQMYNMAAVMSVLIFILIGGFSFWKFKNTVTFKEL
>NZ_CP006903.1|WP_012423257.1|763666_764491_-|sugar-ABC-transporter-permease
MKKKITTVLLHLELIIMSLLILIPVFWIIMSSFNKEGGLSSASLMQTEFTLNNYKRLFTETNYSIWFYNTLKIAIISSVVSVILILITAWIISRFNFRGKKQGLLTIMILSMFPTFLSMTAIYTLFLSLGLIGKPISLILVYSVGAIPYNTWLVKGYLDGIPMSIDEAAYMDGCSKIKTFFKIILPMSKPIITYCAVSQFMFPWMDYILPNILLSNDNTKTVAIGLFALINGKESINFTLFAAGAVLIAIPITIVFIIFQRYLVQGVTSGADKG
>NZ_CP006903.1|WP_035791840.1|762366_763641_-|maltose-ABC-transporter-substrate-binding-protein
MIKQIKMIFLPVLIVTLMFSLISCRNREIPFDDDSELEETSELKPEKEAELVYWTDDLDFGQAIAKSFEEKYKVKVNVQKIGLDSMDKMMLDAPTGNGADVFMAANDNFSKGKDSGIFAKIRPSIKKEIEEVTNETALKTVTSDDELYGIPVSIESYAMLYNKDLVKEKPSETFEQIEEEANKYNDKNINKFWFLTIATDGYSAYPFLSVDGFRLFGENGNDGDNPGFNTKEFEKGLEAISKLRKIIPIESEDLKLQASTFLEQNFRNGKTAYYPIGPNAIKELKKSGVNFGITKLPTYGGKPMRAFSVVQNAHVSAYTKYPNASQLFAQYLVSKDAASLLYTKAYKITSRKDTSNIEGLKDDEYMKVYADQFNNTDPIPSTKRISYFWTIMESTLGSVFDGNITPNEAAEKIQKDFDALVQSE
>NZ_CP006903.1|WP_035791837.1|760430_762278_-|glycoside-hydrolase-family-13-protein
MNLSSIIHEPKSSYCYAYNNDTIHIRLKTAKNEIKKVLLLAVDPFNWVPGKDNPQIYEFEVDSILKNQMEKEQVTELYDCWFAEIKGIEWGRIKYCFIVESNNEKFIIGSHDRIKYSGNTKNLYDLSNYFNYPYINEEDLYTCPEWVSETVWYQIFPERFAKGKTDSKKDFIPWGNDEIDGAHKKFGGNLNGVIDKLDYIKETGFSGIYFNPIFESRSSHKYDTTNYYKIDPEFGDNETFKILVEEAHKRGIKVMLDGVFNHCGFLHPFWQDVCKNGIKSKYYDCFYILDPSKPIVQGDLKNGLPEECSREKLNYRTFAFTQSMPKWNTKNKIVRDYLIDVGSYWVKNYNIDGWRLDVSNEVSHDFWREFRKKIKSINKDVYILGENWDNSYPWLQGDQFDSVMNYEFTKPVWNFFKENSEETKYASEKFKFSISKLLTDYPKNITKNMFNLLDSHDTTRIFNIVGKNTEIAKLAYVFMMTFPGCPCIYYGSEIGMDGDEHSNRKCMIWDESKQNRELFSTIKKLINLRKKYKSFNTENMKWINNTENLNIVLYKKSTDKETLYVLLNNSPNEVNLLLPDEMKQSEYINCYSDKIIELQEKLLIKPYEFKLLLKS
>NZ_CP006903.1|WP_035791853.1|772980_773736_-|DUF438-domain-containing-protein
MDNKKVEKLTEVLQKLNQVGLTETLRKEALDIVSNINPMELSIAEQNLIEEGMNPQDLRHLCDIHMEVLRGELDKIKTKLEPDHVLYTLISEHDKILEFLTELEEINFKIQKLKSYNSGSEEFEALKTVVNNILDAENHHQREEKVLFVEMEDRKITGPTRIMRMEHDDLRAKKKFLKQTAEEVYQLEFNEFKEKVDDTAKYIVFNLRDHIFKENYILYPTAIETIKEKEIWKDMKKKCDEIGYCGFTPKA
>NZ_CP006903.1|WP_035791855.1|773764_774475_-|iron-sulfur-cluster-repair-di-iron-protein
MNKFNSNQKIGDIVTKFPKVADIFKEYKIDFCCGGDRTLITAIKEQGVNETELLERINDSYEKLKNNIYSKDRNWVEAPLDELVDQIVNVHHAYLYENLPKISELIIKILRVHGEKHPELSRVHKLFHTIKMELEAHLIEEETIQYPSINAYLRSNSETDLDKAINIINQLQDEHIGAGNILKELREITNDYDIPSNVCTTYRLTYSKLQEMESDMFQHIHLESNILFPRLYELKK
>NZ_CP006903.1|WP_035791857.1|774710_775424_-|Crp/Fnr-family-transcriptional-regulator
MNNHCGNCCNNCRGELCASKVSIFENLNNEELIEIVKTINHKEYNKGDIIFTEGSTANTLYFINEGKIKLYKYTKDGKEQILHILSEGDLFGELNLIKPSEYGFNSKSIVNSKICTLTKDEMKDIIMRNPEIGIKVLETVGERLGKVESLVQNLATNDVDSRMAYLLIDLMEKYGETIEKNISIKLSLSREDMANYIGVTRETISRKLKKFEDEKLIKIVGIKNIIILDEKGLKDYI
>NZ_CP006903.1|WP_035791859.1|776015_776432_-|flavodoxin
MKIIYWSQSGNTEKMASLILEGIKSEGGKAELLEVSAVSLDDVKNEEILILGCPASGAEELEESEMEPFVKSLEGLIQGKKVALFVSWGWGNGEWMTEWEKRMESYGAILISEGLTVQEYPEGEDENKCISFGKLIVK
>NZ_CP006903.1|WP_039308107.1|776523_777984_-|NADP-dependent-glyceraldehyde-3-phosphate-dehydrogenase
MFNHIKDENNTFKNLINGEWVSSRSFVEIKSPLSNSLLGRVPAMTKEEVDIAVQTAKEAQKKWNKITINERAEILYKASDILLENIDELSELMMMEIAKDRKSCRSEVSRTSDFIKFTADTAKNLSGESIPGDSFPGFKNDKVSIVKREPLGVVLAISPFNYPINLSASKIAPGLMAGNSVVLKPATQGSLCGLYLARIFEKAGVPAGVLNTITGKGSEIGDYITTHKGINFINFTGSTEVGTRISKMTSMVPLLMELGGKDAAIVLEDADLELTASNIVAGGYSYSGQRCTAVKRILVVDKVADKLLEKIKEKMKKLIVGNPLEKDVDIVPLISSKAADFVIELIEDAKSKGADLIVGGNREGNLIYPTLFDNVTTDMRLAWEEPFGPVLPIIRVKDKDEVIEIANKSEYGLQSAVFTKNINDAFYVADKLEVGTVQINNKTERGPDNFPFIGVKASGIGTQGIKYSIESMSRPKATIINLSIHN
>NZ_CP006903.1|WP_035791863.1|778035_778806_-|oxidoreductase
MIDNKVSSDSRWKGFKDFLVFKIVKEDEVVTSFYLKSLDGSKLPEFIAGQFITVRIKNEDNTFTKPRQYTLSMNYNEEFYRISVKKEENGFLSKKLCDEIKAGDNLQITAPLGNFILKNSEKPLVLIGGGIGITPMLTMAYDAVSSDRKIHFIYSIPNSTHHSFKEETAKLNNNSFKSTVLYTRPTETEELGKDFDIKGRISREWMIDNLPKDGDFYFCGPVPFMKTIYHNLISMGIEKEHINFEMFEAGVDIRKE
>NZ_CP006903.1|WP_012424131.1|779225_779387_-|rubredoxin
MDSYVCTVCGYIYDPVVGDTDNGVAPGTKFEDIADDWVCPLCGVPKSDFEKVE
>NZ_CP006903.1|WP_039308112.1|780753_780945_-|hypothetical-protein
MTERHYQNEITYILNSFKEKKSENSYCYNNSKIKNELMILTKNISTLKLDKMLNNIKYNLKNR
>NZ_CP006903.1|WP_035787008.1|781130_781352_+|helix-turn-helix-transcriptional-regulator
MLSKRLTYLRKESELTQDELSKKLNISRSAYAHYENGTYEPSIQMLELLANFYDVSTDFLLGRTFIRKPYPKY
>NZ_CP006903.1|WP_080315394.1|781354_781531_-|aspartyl-phosphate-phosphatase-Spo0E-family-protein
MGKSKIEKLRGKLHRAIEYYGRDSPIVLKISQELDMHIVEELKKCKNKKRPLNNNLVF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP006903_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006903_2

2456311-2456418

Orphan

Consensus_repeat	Method
GGTGTAATTTCTCCACCTACTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006903_2

>merge|NZ_CP006903|2|2456311-2456418|CRISPRCasFinder
GGTGTAATTTCTCCACCTACTATTGGTGTAATTTCTCCACCTACTATTGGTGTAATTTTTACACTAGGTTCATTTTTTACACTAGGTGTAATTTCTCCACCTACTTTT

>NZ_CP006903|2|2|2456311-2456418|CRISPRCasFinder
GGTGTAATTTCTCCACCTACTATT	GGTGTAATTTCTCCACCTACTATTGGTGTAATTTTTACACTAGGTTCATTTTTTACACTA
GGTGTAATTTCTCCACCTACTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006903.1\|WP_039309442.1\|2452747_2453866_-\|phage-major-capsid-protein	unknown	unknown	gnl\|CDD\|377449
NZ_CP006903.1\|WP_035783428.1\|2465657_2466179_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NZ_CP006903.1\|WP_039309457.1\|2457055_2457259_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
NZ_CP006903.1\|WP_039309456.1\|2456686_2456980_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|200128
NZ_CP006903.1\|WP_100433897.1\|2455913_2456237_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006903.1\|WP_035783429.1\|2466374_2466995_-\|HDIG-domain-containing-protein	unknown	unknown	gnl\|CDD\|182810
NZ_CP006903.1\|WP_012425417.1\|2463154_2463874_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP006903.1\|WP_035783427.1\|2464029_2465610_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NZ_CP006903.1\|WP_039309439.1\|2452110_2452545_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|366837
NZ_CP006903.1\|WP_039309449.1\|2454697_2454913_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006903.1\|WP_035783399.1\|2450758_2451226_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227127
NZ_CP006903.1\|WP_039309446.1\|2453883_2454315_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006903.1\|WP_052134096.1\|2457403_2457856_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP006903.1\|WP_035783398.1\|2449184_2450438_-\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NZ_CP006903.1\|WP_039309433.1\|2451551_2451743_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006903.1\|WP_039309450.1\|2455135_2455954_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|236153
NZ_CP006903.1\|WP_039309448.1\|2454476_2454683_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006903.1\|WP_035783425.1\|2460483_2462856_-\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319795
NZ_CP006903.1\|WP_039309459.1\|2457856_2459005_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP006903.1\|WP_035783423.1\|2459805_2460462_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP006903.1\|WP_039309442.1\|2452747_2453866_-\|phage-major-capsid-protein	gnl\|CDD\|377449	pfam05065, Phage_capsid, Phage capsid family. Family of bacteriophage hypothetical proteins and capsid proteins.	1.77412e-13
NZ_CP006903.1\|WP_039309457.1\|2457055_2457259_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	2.43111e-10
NZ_CP006903.1\|WP_039309456.1\|2456686_2456980_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|200128	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General].	3.41201e-06
NZ_CP006903.1\|WP_035783429.1\|2466374_2466995_-\|HDIG-domain-containing-protein	gnl\|CDD\|182810	PRK10885, cca, multifunctional CCA addition/repair protein.	7.89919e-12
NZ_CP006903.1\|WP_012425417.1\|2463154_2463874_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	3.52353e-58
NZ_CP006903.1\|WP_035783427.1\|2464029_2465610_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	5.34641e-157
NZ_CP006903.1\|WP_039309450.1\|2455135_2455954_-\|ATP-binding-protein	gnl\|CDD\|236153	PRK08116, PRK08116, hypothetical protein; Validated.	3.44501e-66
NZ_CP006903.1\|WP_035783399.1\|2450758_2451226_-\|hypothetical-protein	gnl\|CDD\|227127	COG4789, EscV, Type III secretory pathway, component EscV [Intracellular trafficking and secretion].	0.00373869
NZ_CP006903.1\|WP_052134096.1\|2457403_2457856_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.02423e-17
NZ_CP006903.1\|WP_035783398.1\|2449184_2450438_-\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	4.21604e-125
NZ_CP006903.1\|WP_035783425.1\|2460483_2462856_-\|cation-translocating-P-type-ATPase	gnl\|CDD\|319795	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7. This subfamily contains P-type ATPase transporters of unknown function, similar to Streptococcus pneumoniae Exp7. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids. They are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle. A general characteristic of P-type ATPases is a bundle of transmembrane helices which make up the transport path, and three domains on the cytoplasmic side of the membrane. Members include pumps that transport various light metal ions, such as H(+), Na(+), K(+), Ca(2+), and Mg(2+), pumps that transport indispensable trace elements, such as Zn(2+) and Cu(2+), pumps that remove toxic heavy metal ions, such as Cd(2+), and pumps such as aminophospholipid translocases which transport phosphatidylserine and phosphatidylethanolamine.	0
NZ_CP006903.1\|WP_039309439.1\|2452110_2452545_-\|HNH-endonuclease	gnl\|CDD\|366837	pfam01844, HNH, HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	0.0020383
NZ_CP006903.1\|WP_039309459.1\|2457856_2459005_+\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.04669e-41
NZ_CP006903.1\|WP_035783428.1\|2465657_2466179_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	4.37482e-08

>NZ_CP006903.1|WP_100433897.1|2455913_2456237_-|hypothetical-protein
MLLKNLILNRDSKARAKKCDLQKWCIHINKLIRLDNRTPEDIERVIKWCQNDIFWSSNILSTEKLRKQFDMLYQQMLTKQTMYNQYKNNKEVLEHGGATRKSHRKSL
>NZ_CP006903.1|WP_039309450.1|2455135_2455954_-|ATP-binding-protein
MVEQQENLIEKVCNECGGLQKYKIIQVGKKNIELISKRCKCLEDKERLLEDKRRIEEEKRIQRENEEYIQHLKRKCMMDIKFKNSTFLNWNKTNNSKKVINICKSYFINFDINYDENIGMFLTGGVGIGKTYAVSSLANELMNKGTGVICTSINKLLRGIKNNYSKGISEDIILNDISSVPLLILDDLGTEQNTEWFTTMFYEIIDTRYRTNKPLIITSNLTIEQIENRYHKRINSRIFEMCVPVECGHGDTREIQSEKKLKKLALELQEQI
>NZ_CP006903.1|WP_039309449.1|2454697_2454913_-|hypothetical-protein
MNISVSKYYYIYYKKKKYAICEGNLKHNKNGFRQVLPNIICCVIDDKLEQRKKQLVKHNLITGRRLKTIKM
>NZ_CP006903.1|WP_039309448.1|2454476_2454683_-|hypothetical-protein
MMEIINGKYGQYRVYNKCIAVGYYFFNSIDEIERHRYYRFTNKLKDIDNTLDEAIKIMKTKGLVVKSI
>NZ_CP006903.1|WP_039309446.1|2453883_2454315_-|hypothetical-protein
MAKDKILQIRISEDYHSKLKKLAIERGIDISTLIRSAVEYIPGTSTEEEIEKGLNYVKICDSSAMLFALKNISDVIKNQYNYEFNNNLPEDKVLLDMYNEDIFRGIKQIALSSVIHNLECDNNKLDKETEELIKKLIKDYMSK
>NZ_CP006903.1|WP_039309442.1|2452747_2453866_-|phage-major-capsid-protein
MKSKDILKLEFEEDLQKAMQNTKPGAMAEPFINLMESIGTFNQKEEMIMQQSTKINSIKENGIKAATMSKSDFIKEFGGNSKDISFNDFAQQVLLKNGEIKQEVSKRTDGSVMAPIGISADIIYNACQKSVLLNNCPIVPMKTGTVRIGKVDEDMELDFKERGAVGKNTSLGLTPIDLNAKTLYGYVEVAEEDIQDVYKIENILMNAFADAVAKALDDNFLYTNTKESIKEGVYPKGILDNENIKKVTVKSTDYDMIAKARLAIVNENGEPDTVALNPNELYAIQILKDSNGQYINEPKFYSNLNKIESTRVKTKNGLVMDSNSIVIGMRDELNIKIMDNIKNGTVLMRVMVRADVLPVRENHICKIEVVAS
>NZ_CP006903.1|WP_039309439.1|2452110_2452545_-|HNH-endonuclease
MADTRELKRDRIEQLKQPFECLECGREFIRHRLTEKCCSKECSRKRRNRIKKLRKNEALINNGEVDFDITVKKLIKRDNNKCKICGKKVNIYDYRYNDKGVFVVGADYPVIAHKKPVNKNGKHTWNNVIIVHLRCNSKKNSMSC
>NZ_CP006903.1|WP_039309433.1|2451551_2451743_-|hypothetical-protein
MNKPIKIKGLGDIIEFILNYIKVWKDSYWGYHDYMEKGLTVMVKPFLYLYYITIQIKISIKHD
>NZ_CP006903.1|WP_035783399.1|2450758_2451226_-|hypothetical-protein
MEIFAEQFIPSDRSHKSSQVMKKISIVLFILSLFIVLLSLMIAISVMLLSVVLFLASMCMYVDYEYEFFDGTLTVTKIFNMSKRKIALKVDKGSIKNLYALEAKKDNNSKIKKFYTTNIEGLKKYNFELNNGKIVQLALNTEIEKLVNVFLKNNM
>NZ_CP006903.1|WP_035783398.1|2449184_2450438_-|HlyC/CorC-family-transporter
MDPSYTWEIVILIILLMLSAFFSMSETALMSINKIRLRHMVEEGVQGAKLVEKLTEDPNKLLGAILIGNNIANIAASGLATVLATNIFGPTGVGIATGIMTVLVLIFGEITPKSIAKQRSDSVALKVGKPIKLIVTIFKPFVYIFTAISSFFIKILGADPKATEPFITEEELKTMVGVSEEEGVLENVEKEMIFNVFDFADLQVKDVMVQRVDVTALDSESTYDDVLKIIKEEQFSRIPIYNQTIDDVIGILNVKDLLMLENPRENFKMTKYIREPFYTFEFKKIVELFKEMKKERNHIAVVLDEYGGTVGIITIEDLIEEIVGDIEDEYDDANTSIEVIKENEYIVDGSVRLHDIGDLIGTDMESDEFDSVGGLIIGELGRMPEEKEEIECDNMKFIVENIDKNRIKKVRIFTDNE
>NZ_CP006903.1|WP_039309456.1|2456686_2456980_-|helix-turn-helix-domain-containing-protein
MSKQELLKLFQIAEETGLPLSTIQKHVREGKLKANRNGREYLVTRTDLNRYLGIESNDDMLKKDLKIAQLEGKIKSYEMQFNAIKGMINNLDNLIRL
>NZ_CP006903.1|WP_039309457.1|2457055_2457259_-|helix-turn-helix-transcriptional-regulator
MNYGLKLKLSRIEKGYTQKQLAEIIGISTITLQSYERCCREPRIKTMKKISKILDKSVQELFFLDED
>NZ_CP006903.1|WP_052134096.1|2457403_2457856_+|helix-turn-helix-transcriptional-regulator
MGLGENIKKIRLKKNLTQQQLADNIGLKAITIRKYENNEREPNIETLQKIADTLNVSFSELVPKDDLQLASDYFRLKVLAEERGLIKSHSDHVLTDYFNSIKNPKRFILQNSFSVDVESLTDNQIDELFMSIDFAIKVKLEEFKNNKVGE
>NZ_CP006903.1|WP_039309459.1|2457856_2459005_+|site-specific-integrase
MASYEQLSKYNWKATVSLGYENGKQIKTRKQGFKNKKEAEKWVTDTLSKKHKGYITPTESNILFKDYINKWFNDYKSKHIGINTRINYKSRIDTHIIPKLGSYKLNKITTAIVQDFYNSLIGDGLKPSSVKKIMEILNGVFKYAQKSKLIYVVPTDIEKQPMNKPKIEFWSKKEIDFYLNIIKETYLYTPILIGVLTGLRVGELCGLRWSDIDFKNNSLTIRNQVIYDRELKILVFSEILKTDSSYREISLPNILIDYLKSIRGNTNDTDFIVLNRDGLMCNPRNLSMNFSKSISKYKNPVDKNSSRINKNDYMQLKQITFHGLRHTHATLLIFNGENIKVVSDRLGHKDIATTLNTYTHIMEDMKNNTANLLDNIFKYNPQ
>NZ_CP006903.1|WP_035783423.1|2459805_2460462_-|hypothetical-protein
MFKNDYMKEMENSLDLIKEEVNKNLINEKIKKAKIAVNTQLKNLVGLDINAIDTLSFNSVREIISKDASYNLGKYIALGELLQLQGKICLKDDNESMMLNYYLKSLESFYEIYDEEEINNDKYIKDIECLINDLREYDIPIESDVQIFKFYELMNKLDKAEDMLFYIIDKSNNDKSNIEMGLEFYNKLKQRPEEELIKGNLPLEEVEDSYLELSKKLK
>NZ_CP006903.1|WP_035783425.1|2460483_2462856_-|cation-translocating-P-type-ATPase
MDIYALEKNNDFIGLSDKEVTERITEGKVNYIPKAPSRTLWQIIRANLFTSFNTINFILAIIVIIAGSPKNSIFAGVILVNTLIGIAQELRAKKTLEKLSVINEAYANVLRNGEVKKIPLEKIVLDDILYLDTGAQILADCEVISSVELEVDESMLTGESDSIIKYSDDKLFSGSFVVAGEAYAKVTSVGKETYASRLAEEAKKFKLINSELQNAINKIFRVIIWIIIPLSILLTVTQLMINNVTWQQASIGTVAGIIGMIPEGLVLLTSATFIVAIVKLAKYDTLVQELCSTEVLARVDVLCLDKTGTLTEGNLKLVDIKNISNIKSEDIDTVLAALIHNLPSNNATQKAILERYKEFNNNLECTNKIVFSSKRKWGGATFKDLGTWVMGAPEIILNKEYSDIKSLVDEEAAKGRRVLLLAKVKNNKLNHKLSGEIEATALILIEDIIREQAPDVLDYFNKQDVEVKIISGDNPLTVSTVAKKAGVNGWENAIDARNLPENEDKFNEMIKNNTVFGRVTPHQKKRIVKSLQTLGHTVAMTGDGVNDVLALKESDCGIAMANGSDATKAVAQLVLLKSDFSALPKVVEEGRKQINNLERVAELFLSKTVYSIILALVFSLLFLPFPVLPIQMSLVGSCAIGIPAFFLALLPNEGGVKKGFLHRILTVSIPNGIFLALFTTLTFVISLYVGTSIEYSRTLALLMFAGVSMIILLKVSRPLTTFKFCLVVLMFGIVVIAFITPIGRVIFTLEKLKLRHWIISLAVIILSAPLITKIVDLVRKKVIKVFKFEY
>NZ_CP006903.1|WP_012425417.1|2463154_2463874_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MIRTIIFFIAIIFSLLFVSMNKLKIKSLEKKGDLKEKTEFIHKVTSKWARFVMKACGARINVIGLDNIPKGETILFISNHQSNFDIPLLMSSIDVPKGFIAKKELETLPFISTWMKYINCVFMDRKNLRKSAEAIVQGINILKTGYSMVIFPEGTRSKGKEIGDFKAGSFKLALKSKCVIIPLTINGTYKLLEQTNRIKPANVELVVHAPIYTKDLTKEEQDELPNKVRSIVCSKYRDN
>NZ_CP006903.1|WP_035783427.1|2464029_2465610_+|DEAD/DEAH-box-helicase
MNDNKFYSLGLKDTVVKAIDDLGFNTPSQIQEESIPVTLEGFDLIGQAQTGTGKTAAYGCPILSRLNDTNGIKALILAPTRELAVQVNDELKKLSKYEKANVLPVYGGESIDRQIRALRRDNIDIVVGTPGRVLDLINRKILKLNTVDFLVLDEADEMLNMGFIDDIETIISNTPAERQTLLFSATMPAPIAKLAKNYMKADAKHVAIKRSSLTVSKIEQNYFMINNKHRLEALCRLLDLDNPSSAIIFCRTKKGVDELVEELQGKGYVVEGMHGDMSQVHRLTTLKKFKEGSLNLLIATDVAARGIDVDGITHVINYDLPQDVESYVHRIGRTGRANRTGTAYSLVSPKELGMLKQIQRVTKSTITEKSVPTANEIHSRKFTNIMNEIKETIDSGDFSTFVPSAIELNEAYDPISIIASLMKIKFENESSFEYNTDTLDAPSASKNDVRLFFSVGKKDGLTPKILINYIKDQTRVRASAIGKIDLMDNFSFVTIDEDVSSKVLEKCIGGKINQKKVNVEVANKRK
>NZ_CP006903.1|WP_035783428.1|2465657_2466179_-|Hsp20/alpha-crystallin-family-protein
MFKMFPFKFWGTVNIGNLGNVIGSFLEDIDLSGLINELDEEYEEENSKESQESEDSKDEDVAEFIQLEEYDDMYILTIELNGVDLRQTSIQYNPGKLSINLNKMEKVSQHIGMFSSDYMVKKNYKKEFDKIESIDESKIMKILENGVLKISMPKKYALNDDSKIVDVKNYIEN
>NZ_CP006903.1|WP_035783429.1|2466374_2466995_-|HDIG-domain-containing-protein
MEEKKIFLEIEKHLLNDEKPSLFLNEALHKGSFDKYPLSMIKDLKEVPQNPKYHPEGNVFIHTMMVVDEGAKRREISNDKRIFMWTLLLHDIGKKPTTKMRKGRLISYDHDKVGAEMAEEFLNYFNENRDLVDYVRKLIRWHMQSLFVVKNTRFQDIEGILRDISVDDIALVSLCDRLGRGGLDDSLIEQTKNDIEFFKKVLNSKK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP006903_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006903_3

2761623-2761735

Unclear

Consensus_repeat	Method
ACCCGAAGGTCGTAGGTTCAAGTCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006903_3

>merge|NZ_CP006903|3|2761623-2761735|CRISPRCasFinder
ACCCGAAGGTCGTAGGTTCAAGTCCTGCCCCCGCAACCATAAGAATTAAGGCGGAATAGCTCAGCTGGCTAGAGCATTCGGTTCATACCCGAAGGGTCGTAGGTTCAAGTCCT

>NZ_CP006903|3|3|2761623-2761735|CRISPRCasFinder
ACCCGAAGGTCGTAGGTTCAAGTCCT	GCCCCCGCAACCATAAGAATTAAGGCGGAATAGCTCAGCTGGCTAGAGCATTCGGTTCATA
CCCGAAGGGTCGTAGGTTCAAGTCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006903.1\|WP_035783067.1\|2770720_2771494_+\|type-III-pantothenate-kinase	unknown	unknown	gnl\|CDD\|237347
NZ_CP006903.1\|WP_035783060.1\|2773471_2773954_+\|transcription-elongation-factor-GreA	unknown	unknown	gnl\|CDD\|234693
NZ_CP006903.1\|WP_012422969.1\|2766282_2766822_+\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
NZ_CP006903.1\|WP_035783090.1\|2755100_2755652_+\|stage-V-sporulation-protein-T	unknown	unknown	gnl\|CDD\|131898
NZ_CP006903.1\|WP_003373094.1\|2760825_2761242_+\|RNA-binding-protein-S1	unknown	unknown	gnl\|CDD\|235614
NZ_CP006903.1\|WP_039309534.1\|2773999_2775505_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP006903.1\|WP_035791380.1\|2757303_2758770_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|226465
NZ_CP006903.1\|WP_035783092.1\|2753877_2754909_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|234605
NZ_CP006903.1\|WP_035783063.1\|2772532_2773357_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006903.1\|WP_035783081.1\|2760004_2760397_+\|spore-cortex-biosynthesis-protein-YabQ	unknown	unknown	gnl\|CDD\|131939
NZ_CP006903.1\|WP_035791384.1\|2771499_2772465_+\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NZ_CP006903.1\|WP_012424169.1\|2759300_2759561_+\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|224109
NZ_CP006903.1\|WP_035783079.1\|2760475_2760769_+\|septum-formation-initiator-family-protein	unknown	unknown	gnl\|CDD\|368217
NZ_CP006903.1\|WP_035783083.1\|2759693_2759987_+\|sporulation-protein-YabP	unknown	unknown	gnl\|CDD\|274341
NZ_CP006903.1\|WP_003374604.1\|2758971_2759250_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_CP006903.1\|WP_035791378.1\|2755753_2757289_+\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529
NZ_CP006903.1\|WP_012425148.1\|2766895_2768701_+\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	unknown	unknown	gnl\|CDD\|273520
NZ_CP006903.1\|WP_035791382.1\|2762350_2764732_+\|stage-II-sporulation-protein-E	unknown	unknown	gnl\|CDD\|274328
NZ_CP006903.1\|WP_035783070.1\|2768922_2770593_+\|formate--tetrahydrofolate-ligase	unknown	unknown	gnl\|CDD\|376511
NZ_CP006903.1\|WP_035783073.1\|2764870_2766277_+\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950

Protein	Function_ID	Function_description	E-value
NZ_CP006903.1\|WP_035783067.1\|2770720_2771494_+\|type-III-pantothenate-kinase	gnl\|CDD\|237347	PRK13318, PRK13318, type III pantothenate kinase.	2.38758e-157
NZ_CP006903.1\|WP_035783060.1\|2773471_2773954_+\|transcription-elongation-factor-GreA	gnl\|CDD\|234693	PRK00226, greA, transcription elongation factor GreA; Reviewed.	9.99024e-74
NZ_CP006903.1\|WP_012422969.1\|2766282_2766822_+\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	5.69421e-88
NZ_CP006903.1\|WP_035783090.1\|2755100_2755652_+\|stage-V-sporulation-protein-T	gnl\|CDD\|131898	TIGR02851, stage_V_sporulation_protein_T, stage V sporulation protein T. Members of this protein family are the stage V sporulation protein T (SpoVT), a protein of the sporulation/germination program in Bacillus subtilis and related species. The amino-terminal 50 amino acids are nearly perfectly conserved across all endospore-forming bacteria. SpoVT is a DNA-binding transcriptional regulator related to AbrB (See pfam04014). [Regulatory functions, DNA interactions, Cellular processes, Sporulation and germination].	1.68264e-95
NZ_CP006903.1\|WP_003373094.1\|2760825_2761242_+\|RNA-binding-protein-S1	gnl\|CDD\|235614	PRK05807, PRK05807, RNA-binding protein S1.	1.68429e-76
NZ_CP006903.1\|WP_035791380.1\|2757303_2758770_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|226465	COG3956, COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only].	0
NZ_CP006903.1\|WP_035783092.1\|2753877_2754909_+\|peptidylprolyl-isomerase	gnl\|CDD\|234605	PRK00059, prsA, peptidylprolyl isomerase; Provisional.	1.64922e-137
NZ_CP006903.1\|WP_039309534.1\|2773999_2775505_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP006903.1\|WP_035783081.1\|2760004_2760397_+\|spore-cortex-biosynthesis-protein-YabQ	gnl\|CDD\|131939	TIGR02893, Spore_protein_YabQ, spore cortex biosynthesis protein YabQ. YabQ, a protein predicted to span the membrane several times, is found in exactly those genomes whose species perform sporulation in the style of Bacillus subtilis, Clostridium tetani, and others of the Firmicutes. Mutation of this sigma(E)-dependent gene blocks development of the spore cortex. The length of the C-terminal region, including some hydrophobic regions, is rather variable between members. [Cellular processes, Sporulation and germination].	9.19336e-15
NZ_CP006903.1\|WP_035791384.1\|2771499_2772465_+\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	3.93476e-135
NZ_CP006903.1\|WP_012424169.1\|2759300_2759561_+\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	4.20564e-28
NZ_CP006903.1\|WP_035783079.1\|2760475_2760769_+\|septum-formation-initiator-family-protein	gnl\|CDD\|368217	pfam04977, DivIC, Septum formation initiator. DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil.	6.40867e-09
NZ_CP006903.1\|WP_035783083.1\|2759693_2759987_+\|sporulation-protein-YabP	gnl\|CDD\|274341	TIGR02892, conserved_hypothetical_protein, sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein. [Cellular processes, Sporulation and germination].	2.55012e-23
NZ_CP006903.1\|WP_003374604.1\|2758971_2759250_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	1.59574e-42
NZ_CP006903.1\|WP_035791378.1\|2755753_2757289_+\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.82912e-132
NZ_CP006903.1\|WP_012425148.1\|2766895_2768701_+\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP006903.1\|WP_035791382.1\|2762350_2764732_+\|stage-II-sporulation-protein-E	gnl\|CDD\|274328	TIGR02865, Stage_II_sporulation_protein_E, stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs. [Cellular processes, Sporulation and germination].	0
NZ_CP006903.1\|WP_035783070.1\|2768922_2770593_+\|formate--tetrahydrofolate-ligase	gnl\|CDD\|376511	pfam01268, FTHFS, Formate--tetrahydrofolate ligase.	0
NZ_CP006903.1\|WP_035783073.1\|2764870_2766277_+\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	3.49043e-73

>NZ_CP006903.1|WP_003373094.1|2760825_2761242_+|RNA-binding-protein-S1
MTLEAGNILEGIVVNITNFGAFIEVEGKTGLVHISEVADSYVKDIREHLKEQDKVKVKVISIDDNGKISLSIKQANIQKKSVKPVEIDWNSNTEKKKNGSGNFEDIMSRFLKDSEERMQDVKKHQEFKGKGAKKCPAK
>NZ_CP006903.1|WP_035783079.1|2760475_2760769_+|septum-formation-initiator-family-protein
MKKLTFRNIIIIVLLSIFVFSYVRQRVAIDRIEKQLNEKQLQLDEITKKNNRLSDEVEKIDSGSDEYLEKLARERLGMIKPGEKVINSSEQTSNSEK
>NZ_CP006903.1|WP_035783081.1|2760004_2760397_+|spore-cortex-biosynthesis-protein-YabQ
MPLTLTMQFNLLMYSIIAGLITGFLFDIYRGIRGLNSIKIITVVEDILFWVLTALIIFTFLLYTNYAFLTPYVYIFIIISLLIYLKAISSYFYSLEQLVIKKVNTFFRIIFKNLIYPIKIVFYKVIDKSK
>NZ_CP006903.1|WP_035783083.1|2759693_2759987_+|sporulation-protein-YabP
MENKDENKLNDRNSNLSLENRQKLILSGVIEVISFDSQKIDLTTVLGNLSIKGSDLKMNKLDVKNGDVIINGSIDSMVYSGKEVKKSKESIISRLFK
>NZ_CP006903.1|WP_012424169.1|2759300_2759561_+|RNA-binding-S4-domain-containing-protein
MRLDKYLKVSRIIKRRTVAKEACESGRVSINGKVAKPSTDIKEDDIIEITFANRTLKAKIVNIKEHVRKEDAKEMYIIVEGQEDKE
>NZ_CP006903.1|WP_003374604.1|2758971_2759250_+|HU-family-DNA-binding-protein
MNKAELITSMAEKSKLTKKDAELALKSFIESVEEALESGEKVQLVGFGTFETRERAAREGRNPRTKEVINIPATTVPVFKPGKEFKDKVNNK
>NZ_CP006903.1|WP_035791380.1|2757303_2758770_+|nucleoside-triphosphate-pyrophosphohydrolase
MIKIVGLGPGAKEALTIGCIEELKNCKNIFLRTEKHPTVDYLTENNIEFKTYDYIYDTEESFDEVYFNIANDIINKYKQSGELVYAVPGHPLVAEKSVFNLMKLCKKENIDYKVIPAVSFIDAMMESLAIDPIEGLKVIDAFDINNQILDKRIGTIITQVYNPLIASEVKLRLLQKYDDETEIVYVRAAGIIGEESIRKIPLYELDMQEDIDYLTSVYIPKDLNNKKDFYDLLETVEVLRGENGCPWDKEQTHESIKNSLIEESYEVVDAINNEDDDSLIEELGDVLFQVVFHSSIGQEDGYFNINDVVKAICDKMIYRHPHVFKNLNDVNSSKDVLEKWDELKKSEKGYETLTEEMNGIAKSLPSLLRAYKVQKKAKRVGFDWDDVSFAFEKVNEELKEVKDAYISENKENIEDEIGDLLFSCVNVARFLGIDGEEALNSTINKFISRFSYIEMKALEKKLNLNEMSLEDMDILWEEAKKLNKSVIK
>NZ_CP006903.1|WP_035791378.1|2755753_2757289_+|polysaccharide-biosynthesis-protein
MKKQSLIKGSLILGVAGILTRFLGLFFRWPLIMLIGDEGIGYYQMSYPLYMFFVAIASGIPIAISKMISENNAIDDINGIFEIMKESAILMAILGTGTTFALFFFAKPIISFLKWDPKAYYSLIGISFAPIIISFITIFRGFFQGLQNMSPSAISQLIEQIGRIIFGVGLAVILLPRGIEYSAGGAAFGATAGAIMAGVYLFSKYKKIKKEYGIKKVKTNPDVLSDILRIAIPISLGATVGSIMGLIDSIVVPQKLLEAGLTNMQSTVLYAQLTGKASVIVNVPLTLSMALCISLIPIIAENFILKNHVEVKRKINMSMKMSAVIAIPCMFGIFFLAEPIMRLIFPGRFAGAGILKYLSLSIPFIILTQTTTSILQGTDNYILPVINLFIGCFIKGILTWILVPMKAFNIYGAVIASIIAYLVSSILNLIAMKWKLKIKLNVYEILIKPAYASTLMMILVLISYNYIYKSTTSNGISCLISIFLGIIVYIILIMLLRVFKIEEIKSRFRRN
>NZ_CP006903.1|WP_035783090.1|2755100_2755652_+|stage-V-sporulation-protein-T
MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFTDREGGVILKKYSPIGELTDFSREYAESLQQAIGHVVLIADKDAFISASGTPKKDYIERKISSELEEVMDGRKTVMLDKSQKVVIPLHNDDDESKYVNQVISPILSEGDAIGTVIILSKEDGETLGEVELKLAETAATFLGKQMEQ
>NZ_CP006903.1|WP_035783092.1|2753877_2754909_+|peptidylprolyl-isomerase
MNKIKKIVASVVVATLAFSIVGCKMIEKTPESIKNTVLATVGKEKITQGDLDRDLKSITESLKQKYGENYESNADIKDQLKELKTQYLNAIVNEKVILAKSAELNLRPSDEELNKEVDEAVNYYKTAYQTEEQYNAFLEQNGFTEDEFKEYQKNQAVVRYVYQDMVKDVEVNDDDIQKYYDENKETQFSTPGEINFDKSLQQANEIKSQLDGGADFSEVAKEKSQDPGTKDNGGSLGFIEYSSTKYVKEFMDGFKDLKEGEISQPIKSQFGYHIIKVTGVKDDGAEVAHILVADKGEGTVTPLEDVKEDIRGQLLQKKQSDVFNEKIEEWKKEVGVKIHDKNL
>NZ_CP006903.1|WP_035791382.1|2762350_2764732_+|stage-II-sporulation-protein-E
MQYELNINAYKNKKVKKSFLLKMELSRMIFILIGGLLLSRVTLLFNQTQNNGIAPLGIAYLIVMGLKCNRSKTAMASIGVLLGYATINSKLPGGMVYLITAAALTLYYEVLNKSEKRKKEFTSFFIVFLSFIGYGVFANNYDLGVNITLALINALVVLPVYYIIKYSFNCLDEINSNYFFTSEEIVSMAILFCLFVAGIGDISIKYCSLRNVLALLLVVTIAYIGGASYGATMGVAMGIILGCSSNNMMASVGFYGVGGLVIGIFKDTGKIFSVLSGILIYFALGLYSESINSQFIIEVGASLAIFLFIPKNLYRNIEIEINTEKKQESINQIHLNELKEEFTLKLNDLSGVLNQVSKTLEVMDDNDRLLIKNKSCEFVESLADRVCIDCEKKNSCWRMNFNSTYNSFQTLIKSAEEESPILPKTLEASCVKHFTLLKSAQDIVTNHIVNSNIKDRFSEGRQIISSHINNISYSLSNVLDEFKREVTICSDLERIVKRGLNKSSIEYNDIFCYTDKNGRVKIKLTIKDGENCEYYENKLIPLLNDIMHTPLCIIDNGYFINRDTNMCTLLIEEMPKYNVISYGAMASKKGETRTGDSYSFGKATDGSYMTILSDGMGSGPDAEKESKATVDLVEKFMEAGFDEEVTINTMNSIMGMKFSESEKYATLDLSKIDLYSGEVNFVKIGAASSFIKRGDEILVVDSKNLPFGLVDEMELDIIKEEVMPGDILISVSDGILDIDKLNSGNFIWLKEYLKDCCTDPRELSENILQKAMTLSENTLKDDMTVLVSKVYAV
>NZ_CP006903.1|WP_035783073.1|2764870_2766277_+|tRNA-lysidine(34)-synthetase-TilS
MKKKVLSYIIDNNLIKSGDKILVALSGGPDSLCLLNILKELREELDIEIGAAHLNHLLRGDDAFKDEEFVINTCKEMNIPCYVKRVDINKYSKEHRLSSELAGRNVRYDFFDEILKKEGFNKIATAHNANDQAETIIFRMMRGTGLEGLGGIKVCRENKIIRPILCLTRKEVEKYIEEKKLNPRIDKTNFEKIYNRNKIRLDIIPYIQENFNEDIVKTLNRMSLLIQKDNTLIERLCIKAYNEYCKKDNDSKFFILKKELFGEDEAIITRVIRTALVEYSKSHYDFEMKHIYDILELSKKETGKSINLPKNIYVENIYGDIKISSKVKENIKMDKIEFFLDKKSIGEDTIHFNNYEFVMSILKNKSNNLLDLKENNLVKYFDLDKIKENILFRTRKNGDKITPLGMNGQKKLKDIFINMKVPQEDRDLIPLICFDDNIGWIVGLKISDNFKVTNNSKNILKIVAKRKE
>NZ_CP006903.1|WP_012422969.1|2766282_2766822_+|hypoxanthine-phosphoribosyltransferase
MREDIQEILFDEETLNQKIKEIAAKISVDYKGKELVVVGILKGSVLFAAELIKNISIPCEIDFMAVSSYGNSTETSGVVRILKDLDYSIEGKDILLVEDIVDSGVTLSYLLKYLKARKANTIEIVSLLNKSARRKAEVYAKYIGFEVPDAFIVGYGIDYAEKYRNLPFIGVLKPEVYEK
>NZ_CP006903.1|WP_012425148.1|2766895_2768701_+|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein
MKKYSSAALWTVVSIMLILASVAMWETGKGSDSIIYSSFQQKWNQDQIESITIKQDKMTVEGKTKDNKSFVTVVPDDLITSLIKESPKSDVRISFEQPSNSGMWLTTLIPSVLLVVIFLVFLFVFTQQSQGGGGGRGVMNFGKSKAKMAMPDSQKVTFKDVAGADEEKAELEEIVDFLKTPSKYIEIGARIPKGVLLVGPPGTGKTLLAKAISGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKNAPCLIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIMIAATNRPDILDPALLRPGRFDRQVLVGIPDVKGREEILKVHTRKKPLEESVELNVLAKRTPGFSGADLENLANEAALLAVRRNKKRISMQDMEEAITRVIAGPEKKSRVITDHDKKLTAYHEAGHAVVMKLLPNSDKVHEISIIPRGRAGGYTMQLPNEDRAYTSKSKLKNDMIGLLGGRVAEHLILGDISTGAKNDIDRASAIARSMVMEYGMSDKIGTISYGSDDSEVFLGRNLGKGRNFSEDISSKIDHEIKDFIDEAYTKAEKLLNGNLNKLHAVAQALLEKEKIEGKEFEEIFANN
>NZ_CP006903.1|WP_035783070.1|2768922_2770593_+|formate--tetrahydrofolate-ligase
MNTDIEIAQEAEMLHIRNVAEKLGLDEENIEYYGKYKCKVSLDVYNKVKNNRDGKLVLVTAINPTPAGEGKSTVTVGLGDALNKMGKNTVIALREPSLGPVFGIKGGAAGGGYAQVVPMEDINLHFTGDMHAITSANNLLSAAIDNHIHQGNNLRIDSRRIIFKRVMDMNDRALRKIIVGMGGKINGFVREDGFTITVASEIMAILCLASDLEDLKHRMGDILIAYDLDGNPIYAKQLEIQGAMALLMKDAIKPNLVQTLENTPALIHGGPFANIAHGCNSIMATKLSLKLGDIVVTEAGFGADLGAEKFFDIKCRYGNLKPCCVVIVATIRALKHHGGVAKADLNTPNVEALRLGIANLEKQIENIKKFNVEPVVAINKFVSDSDEEIEFIKEFCEKLGVKVALSDVWAKGGDGGIELGEAVLDVIEKDKSNFKTLYDTDKTIEEKILTIAKEIYGADGVVYSNEAKKQIGELVKFNLDKLPICMAKTQYSLSDNPNLLAKPNGFNINVQEIRVSNGAGFIVVQTGNIMTMPGLPKVPAANKMDVLKDGEIVGLF
>NZ_CP006903.1|WP_035783067.1|2770720_2771494_+|type-III-pantothenate-kinase
MILLVDAGNTNIVLGVYKDKKYIASWRISTEGNKTSDEYSIQIMQLLNLNNLNPEDVKGIIVSSVVPNIMHSLENMLRRCFGQEPIIVGPGIKTGINIKYDNPKEVGADRIVNAVAAFEIYKRPVIIIDFGTATTFCSVTENGDYLGGCICPGLRISADALFERAAKLPRVELEVPKKVICKNTVSSIQSGVLFGYIGQVEYIVKKMKEEMNDGIEPYVIATGGLANLIANETDAIDEVDSDLTLEGLKILYQKNRE
>NZ_CP006903.1|WP_035791384.1|2771499_2772465_+|tRNA-dihydrouridine-synthase-DusB
MKIGNLSFDNNIFLAPMAGVTDLSFRGLCKEMGCGLVCTEMVSAKALYYGSENTQTLLRVSNEEAPVAVQIFGREPEIMAEICEKYLNPREDVCIIDINMGCPAPKIVRNKEGSALMLEPNLAHDIVKAIKKVSKKPVTVKFRKGYDDEHINAVEFGRALEEAGADAIAVHGRTRKQMYEGHSDWDIIKKVKEAVSIPVLGNGDVFSPEDAIKMKELTNCDGILIARGSMGNPWIFKQIQDALNGKIVEEISYQDKINMCIRHYELAIKNDGEYKAIREMRKHASWYIKGLPRSTDIKNQINILNDSYEVMSILEQYKNTL
>NZ_CP006903.1|WP_035783063.1|2772532_2773357_+|hypothetical-protein
MDTILYVYLDKKRIYNKYNFFTKIIDLFKTKKLKDIKIDELDILIKRVEIPSNLNDVAYEKNLSRILTKYNGKYNELSLNGKSLYNLNYTSEFQKQFISYSVVQSIRFVLMNRNKSIKNSNILVDIDDEKLLVSILKELAKESRNVILLNSSINKIEKIRETIMSEYGLSIEVILRECDLPNIDFVVTSKNKEYSCNNVWYIKDFPNNSNKGIFINSILYKVPWDISLKEMPPQLVASIIRKQKKRSIHEILKSNDITLESILYNDDEIILGNQ
>NZ_CP006903.1|WP_035783060.1|2773471_2773954_+|transcription-elongation-factor-GreA
MSEPKQYVMTYEGVKKLEGELEYLKTVKRKEITEKIKVALGYGDLSENSEYDEAKNDQAFTEGKILQLENKLKNAVVVDESEIPKDIVSVGSKVKVKDYDFDEEVEYSIVGSAEADPMSFKISNESPVGNALVGKKIGDVVDVVVPDGVSKFEILDIKRG
>NZ_CP006903.1|WP_039309534.1|2773999_2775505_+|lysine--tRNA-ligase
MSTEEMNISELESQYNEQEALRRTKLAELQEAGKDPFDVYKVERTHTSEEVKSNYEELEGKNVTVAGRIMSKRGQGKVVFSDIHDRDGKIQLFIKIDLVGEESLKAYKTYDLGDWVVATGEVFTTKTGEVSVKVSNFELICKSLKPLPEKWHGLKDPDLRYRQREVDIITNPEVKETFIKRSKIISGIREFLDTKGFLEVETPILAPIAGGAAAKPFVTHHNTLDIDMYLRIATELYLKRLVVAGFEKVYEIGRNFRNEGMSVRHNPEFTAIELYEAYSDYNDMMEITENMVAYVCEKVNGTTKVTYQGTEIDFMPPWRRVTMVDVVKEHAGIDFTTIKSDEEAQAIAKEKHLEFAKPLNTVTKGEVLNALYEEFGEANMIQPTFVMDYPVEISPLTKKKRGNEEFTERFEGFVFGRELCNAYSELNDPVVQRQRFEQQAKERELGDDEAYMLDEQFMSALETGMPPTGGMGMGIDRLIMFLTDASSIRDVILFPTMKPQK

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Crispr_ID: NZ_CP006903_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006903_4

2950534-2950630

Orphan

Consensus_repeat	Method
CAATTGTTAATATTATAACAATT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP006903_4

>merge|NZ_CP006903|4|2950534-2950630|CRISPRCasFinder
CAATTGTTAATATTATAACAATTGGCGACAATTGTTGACATGATAAGACTATTATAGCCTTTTATTTTTAAATTCAATTGTTAATATTATAACAATT

>NZ_CP006903|4|4|2950534-2950630|CRISPRCasFinder
CAATTGTTAATATTATAACAATT	GGCGACAATTGTTGACATGATAAGACTATTATAGCCTTTTATTTTTAAATT
CAATTGTTAATATTATAACAATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006903.1\|WP_039309609.1\|2946029_2946611_+\|zinc-dependent-phospholipase-C-family-protein	unknown	unknown	gnl\|CDD\|376406
NZ_CP006903.1\|WP_035786231.1\|2943258_2944473_+\|SEC-C-domain-containing-protein	unknown	unknown	gnl\|CDD\|179393
NZ_CP006903.1\|WP_035786244.1\|2957312_2958797_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274983
NZ_CP006903.1\|WP_012423686.1\|2946739_2947105_+\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|197713
NZ_CP006903.1\|WP_035786246.1\|2958994_2959690_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP006903.1\|WP_035786247.1\|2959693_2961109_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP006903.1\|WP_035786232.1\|2944686_2945754_+\|NTP-transferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223906
NZ_CP006903.1\|WP_035786238.1\|2951620_2952760_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847
NZ_CP006903.1\|WP_039309606.1\|2939067_2940258_+\|electron-transfer-flavoprotein-subunit-alpha	unknown	unknown	gnl\|CDD\|224936
NZ_CP006903.1\|WP_012423672.1\|2955718_2956153_+\|C-GCAxxG-C-C-family-protein	unknown	unknown	gnl\|CDD\|213664
NZ_CP006903.1\|WP_003372598.1\|2952779_2953562_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP006903.1\|WP_012423950.1\|2938176_2938965_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP006903.1\|WP_035786237.1\|2949779_2950412_+\|redox-sensing-transcriptional-repressor-Rex	unknown	unknown	gnl\|CDD\|235486
NZ_CP006903.1\|WP_035786229.1\|2942247_2943090_+\|patatin-family-protein	unknown	unknown	gnl\|CDD\|132847
NZ_CP006903.1\|WP_003369662.1\|2954694_2955543_+\|3-hydroxybutyryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|180269
NZ_CP006903.1\|WP_012423070.1\|2940262_2941666_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|273050
NZ_CP006903.1\|WP_035786240.1\|2953584_2954592_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP006903.1\|WP_012423130.1\|2950758_2951541_+\|short-chain-enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|180270
NZ_CP006903.1\|WP_035786235.1\|2947121_2949389_+\|cadmium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319847
NZ_CP006903.1\|WP_035786242.1\|2956227_2957154_+\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|223200

Protein	Function_ID	Function_description	E-value
NZ_CP006903.1\|WP_039309609.1\|2946029_2946611_+\|zinc-dependent-phospholipase-C-family-protein	gnl\|CDD\|376406	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C.	6.06866e-17
NZ_CP006903.1\|WP_035786231.1\|2943258_2944473_+\|SEC-C-domain-containing-protein	gnl\|CDD\|179393	PRK02250, PRK02250, hypothetical protein; Provisional.	4.53923e-11
NZ_CP006903.1\|WP_035786244.1\|2957312_2958797_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274983	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3. See for descriptions of different groups.	0
NZ_CP006903.1\|WP_012423686.1\|2946739_2947105_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	6.22532e-22
NZ_CP006903.1\|WP_035786246.1\|2958994_2959690_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.53527e-74
NZ_CP006903.1\|WP_035786247.1\|2959693_2961109_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.53933e-54
NZ_CP006903.1\|WP_035786232.1\|2944686_2945754_+\|NTP-transferase-domain-containing-protein	gnl\|CDD\|223906	COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane].	9.89989e-143
NZ_CP006903.1\|WP_035786238.1\|2951620_2952760_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	0
NZ_CP006903.1\|WP_039309606.1\|2939067_2940258_+\|electron-transfer-flavoprotein-subunit-alpha	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	6.33617e-118
NZ_CP006903.1\|WP_012423672.1\|2955718_2956153_+\|C-GCAxxG-C-C-family-protein	gnl\|CDD\|213664	TIGR01909, Uncharacterized_protein_AF_0456, C_GCAxxG_C_C family probable redox protein. This model represents a putative redox-active protein of about 140 residues, with four perfectly conserved Cys residues. It includes a CGAXXG motif. Most members are found within one or two loci of transporter or oxidoreductase genes. A member from Geobacter sulfurreducens, located in a molybdenum transporter operon, has a TAT (twin-arginine translocation) signal sequence for Sec-independent transport across the plasma membrane, a hallmark of bound prosthetic groups such as FeS clusters.	8.39319e-31
NZ_CP006903.1\|WP_003372598.1\|2952779_2953562_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	8.49806e-89
NZ_CP006903.1\|WP_012423950.1\|2938176_2938965_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	6.77103e-94
NZ_CP006903.1\|WP_035786237.1\|2949779_2950412_+\|redox-sensing-transcriptional-repressor-Rex	gnl\|CDD\|235486	PRK05472, PRK05472, redox-sensing transcriptional repressor Rex; Provisional.	1.19501e-117
NZ_CP006903.1\|WP_035786229.1\|2942247_2943090_+\|patatin-family-protein	gnl\|CDD\|132847	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	1.90765e-104
NZ_CP006903.1\|WP_003369662.1\|2954694_2955543_+\|3-hydroxybutyryl-CoA-dehydrogenase	gnl\|CDD\|180269	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated.	0
NZ_CP006903.1\|WP_012423070.1\|2940262_2941666_+\|FAD-binding-oxidoreductase	gnl\|CDD\|273050	TIGR00387, Glycolate_oxidase_subunit_glcD., glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity. [Energy metabolism, Other].	3.04651e-130
NZ_CP006903.1\|WP_035786240.1\|2953584_2954592_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	9.61054e-137
NZ_CP006903.1\|WP_012423130.1\|2950758_2951541_+\|short-chain-enoyl-CoA-hydratase	gnl\|CDD\|180270	PRK05809, PRK05809, short-chain-enoyl-CoA hydratase.	7.36125e-175
NZ_CP006903.1\|WP_035786235.1\|2947121_2949389_+\|cadmium-translocating-P-type-ATPase	gnl\|CDD\|319847	cd07548, P-type_ATPase-Cd_Zn_Co_like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis CadA which appears to transport cadmium, zinc and cobalt but not copper out of the cell. Bacillus subtilis CadA/YvgW appears to transport cadmium, zinc and cobalt but not copper, out of the cell. Functions in metal ion resistance and cellular metal ion homeostasis. CadA/YvgW is also important for sporulation in B. subtilis, the significant specific expression of the cadA/yvgW gene during the late stage of sporulation, is controlled by forespore-specific sigma factor, sigma G, and mother cell-specific sigma factor, sigma E. This subfamily also includes Helicobacter pylori CadA an essential resistance pump with ion specificity towards Cd(2+), Zn(2+) and Co(2+), and Zn-transporting ATPase, ZiaA(N) in Synechocystis PCC 6803. Transcription of ziaA is induced by Zn under the control of the Zn responsive repressor ZiaR. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP006903.1\|WP_035786242.1\|2956227_2957154_+\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	7.99901e-50

>NZ_CP006903.1|WP_035786237.1|2949779_2950412_+|redox-sensing-transcriptional-repressor-Rex
MDKNKSISMAVIKRLPKYHRYLNELMKNDVDRISSKELGEKIGFTASQIRQDLNCFGDFGQQGYGYNVKELYTQINSILGLDKEYNAVLIGAGNIGQAIANYTRFDKLGIMITAIFDANPKLIGIKIRDIEIRDIDELGSFLKSDSVDIGVICVPKKSAQKVSDELVNGGIRGIWNFAPIDLVVPKDVKVENVHLSESVSTLIYQLHQQR
>NZ_CP006903.1|WP_035786235.1|2947121_2949389_+|cadmium-translocating-P-type-ATPase
MENEIKLSLKGLDCANCANKIERKVNDIEDVYEANINFSLGKLTVKLHENKDKDKVFNMIKEIVNKLEPDVIVINEKNNFTDNLTTEEINHDNKCNKSCCGHDNCSTHTHKSSHTHSHNNDHNHIENISEDNEVNSKTKLFDKKKFVYENQIFIIGLILYLIAVLFKEKSYLNISIFVLSYILIGGDVLKTAFKNILRGEIFDENFLMTIATVGALAIGEYPEAVGVMMFYKIGELFQGYAVNKSRKSITSLMNIRPEYANIITEHGERRVSPEEVKIDDFIIIKPGERIPLDGIVTDGKGSIDTSALTGESLPREINIGDELLSGSINLSSVIKLKVTKVFSESTVSKILNLVENSSSKKAKTEKFITKFSRLYTPIVVFLAIAVAIIPPIIIPGEVFSDWIYRALIFLVISCPCALVISVPLGLFAGIGGASKKGILIKGGNYIEVLKNVDTIVFDKTGTLTKGVFKVTEINSMDMKKEDFLRVVALGESFSNHPIAQSIVREFNGILKKEYVENYQELSGYGVKAIIEGKNVILGNYKLLEDNQISIEKVEKPGTVVYVAINNKYSGNIVIADEIKEDSIEAIKKLKMIGIKKTVMLTGDNKVVANSIAKNIGVDEVKSELLPNDKVLEIEKLISNSTSKGKVMFVGDGINDAPVLARADIGIAMGGIGSDAAIEAADVVLMKDNPLALVDAIKIAKKTNAILWQNIIFALGVKIFVLVLGALGIANMWEAVFADVGVTLIAIVNSMRTLKN
>NZ_CP006903.1|WP_012423686.1|2946739_2947105_+|helix-turn-helix-transcriptional-regulator
MNNGTNFVENCKCNIIHEDIVMKVKDLLPQEETLYDLAELFKVFGDSTRIKIICALFESELCVCDMAALLGMTQSAISHQLRTLKSARLVKFRREGKVIYYSLDDEHIKHIFDEGFKHITE
>NZ_CP006903.1|WP_039309609.1|2946029_2946611_+|zinc-dependent-phospholipase-C-family-protein
MINTHKLIAENILNYTNSKSIYLINDHRFIWGNIKPDCVLKYKMIKHYFIESIDIIIKKIEKLCSLSLQDVYYKISVNKFSEELGVVCHFMCDYFCAPHYYRWEFKNTSQVKNHVMYEKDLAKIAKGFNSNGIITSNIDVNNIKEFIYDLQNQYEGSMDFKNDLTYAYYACDSIVNMVLNKVFLNECSLSKVV
>NZ_CP006903.1|WP_035786232.1|2944686_2945754_+|NTP-transferase-domain-containing-protein
MIYGLILAGGKGSRLYPLSRNNQPKQFLKIINEKSFLVNTVERIKPLIDRENIYVVTNRDYEDKIKEEVKDIKEENIFIEPANKETATCIGLSAVRLLKQDADAVMVVLPSDHYIQGEKEYLDTLSQAVEMANRRRCIVTLGIEPTRPETGYGYIEMGDRSTGNISTYKIARFTEKPNLEVAKDFLLKGTYLWNSGMFVFRADVILREIEKYIPKMHKSLMEIYKYIGENNEEQVIKEQYEIIDGISIDFGVMQKTRKAFVIKCDFNWDDIGSFNALSRFLGKYRSNSISKNVYMEDCESCSVFGEKNLIIGFGIKDLVIVDAGDVILVMDKNKDQEIKHLLNKLSDEDKYNEFL
>NZ_CP006903.1|WP_035786231.1|2943258_2944473_+|SEC-C-domain-containing-protein
MVKKECSNKDTNNEFIENKETDESAELYDNMMDDLFEKYENKMNKMFVKGVYSFEVSEQLKSLSKEAVYNIARNLGMNKISTLNKDALIEKVLSEYTEIIANQFIYFEEERFNILKGYLNNGGVKIFDHIDEYELSRTAYFMQQGIIFPSTKDEKAVFLMPKIVQDIIINKSNTEYIDRLKRNKEVLDLYRGLNKAYGIINTKDVPSLVQRYDIENSDECSINEIIKEAQYYYREYREEKGFFINNNIENWSDLLNDIEKYNKDLEYYNINKSELLDTLGSEWIYKSKFGKSFLKEFTNIFEIKKEMVYQIMDDLSFDIQDNDIDDTISSLLELINANNLELRNHVKNIATKFLSNIRLWKYKGATINEMNGNIIEAKSKLIIGRNDPCVCGSGKKYKKCCGKN
>NZ_CP006903.1|WP_035786229.1|2942247_2943090_+|patatin-family-protein
MTGLVLEGGAFRGLFTAGVLDALIDINLEIKYIVGVSAGITNGYSFVSKQRGRNLEVMERFIDHKRYVGYNNLLKCRSIMDMDFVFDEIPNEHCPFDYEAFDKFDGKVLAGSVNVNTGEVEYFDKDYLEKKNTILRATCSIPLLFKFVNIKDQLYADGGLVDAIPIKKSISDGNNKNIIVLTRNEGYRKHESKGNKFAYKLYKKKYPKLAHVLRNRHIEYNSQLDYCKELENKNEAIVIRPTIEMNVGRFEKNKYKLKDIYNNGYSETMKIKDELIKFMD
>NZ_CP006903.1|WP_012423070.1|2940262_2941666_+|FAD-binding-oxidoreductase
MTYKNVEVKDYEYILSIAENDKERVFFGDEINEDYSHDELGGIKKMPDIVVQAISTEEVSKIMKYAYENSIPVTPRGSGTGLVGAAVPIKGGIVIDLCRMNKILEIDEENLTLTLEPGVLLMEIGKYVEEFDLFYPPDPGEKSATIGGNISTNAGGMRAVKYGVTRDYVRGLEVVMPNGEVVQLGGKVVKNSSGYSLKDLLIGSEGTLGIVTKAILKLLPLPKKSLSLLIPFPTLENAIDTVPKIIKSKTIPTAIEFMQREAILAAEEFLGKSFPDKSSDAYLLLTFDGNSTEEIEKAYENVANICLDAEAIDVFISDTEERQESIWSARGCFLEAIKALTTEMDEVDVVVPRNKIGEFVKFTHELESKFNIRIKSFGHAGDGNLHIYILKDQLEDNIWHEKLELVMKDMYDKSKELKGQVSGEHGIGFAKKPYLKESLSNDVLSVMEGIKLAFDPKNILNPGKIFK
>NZ_CP006903.1|WP_039309606.1|2939067_2940258_+|electron-transfer-flavoprotein-subunit-alpha
MAKLVVNQEKITNKEELIKICPFGALEINDGKVEINGACKMCKLCVKKGPKGAIEYIEEEVKSIDKDLWKGISVYVDHVNGRIHPVTYELIGKARELAAKINHPVYCVFIGNKVSEEAKELLHYGVNKVFVYDDEELKDFRIEPYAAAFEDFIKNVKPSSILVGATTIGRSLAPRMAARFRTGLTADCTILDIKEDTDLVQIRPAFGGNIMAQIVTPNSRPQLATVRYKVMTAPERTDDVNGEIIKCEIKKDKLKSGINVLEIKEKNTEVGISDAEVIVAAGRGVKSEKDLAMIKEFAELLGAEFACTRPLIESGWVDAKRQIGLSGRTVRPRLIITCGISGAVQFSAGMNNSEHIFAINNDDKAPIFKVAHYGIVGNMYEIIPQLIEKIKMSKEA
>NZ_CP006903.1|WP_012423950.1|2938176_2938965_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILVCIKQVPGTSKVEVDPVTGVLKRDGIDSKMNPYDLYALETALRIKENEGGNVKVLSMGPNQALSVIREAYSMGADEGALLSDRKFGGADVLATSYTISQGVRKMGDFELIICGKQTTDGDTAQVGPEMAEYLDIPHVANVERIIEIKEKSIIVEMDMPETLEVVEISYPCLITVDKGIFEPRLPSYRKKIATKDKEISIMSLNDFEDRNEKKYGLNGSPTQVERIFPPEVNDDREMWTGDSNELAEKIEHKLKEFKFI
>NZ_CP006903.1|WP_012423130.1|2950758_2951541_+|short-chain-enoyl-CoA-hydratase
MELKNVILEKEGHLAIVTINRPKALNALNSETLKDLDTVLENLENDSNIYAVILTGAGEKSFVAGADISEMKDLNEEQGREFGELGNKVFLRLENLDKPVIAAISGFALGGGCELSMSCDIRIASEKAKFGQPEAGLGITPGFGGTQRLARIVGLGKAKEMIYTCDIIKAEEAYRIGLVNKVVSLESLMDEAKAMANKIIANAPIAVKLCKDAINRGMQVDIDKAVLIEAEDFGKCFSSEDQTEGMTAFLERREKNFQNK
>NZ_CP006903.1|WP_035786238.1|2951620_2952760_+|acyl-CoA-dehydrogenase
MNFQLTREQELVQQMVREFAENEVKPIAAEVDETERFPMENVEKMGKIGMMGIPFAKEFGGAGGDVLSYIMTVEELSKVCATTGVIVSAHTSLCASVINEHGTPDQKAKYLPELCQGKKIGAFGLTEPGAGTDAAGQQTTAILDGDHYVLNGSKIFITNGGVAETFIIFAMTDKSQGTKGISAFIVEKSFPGFSIGKLEDKMGIRGSSTTELVMEECIVPKENLIGKEGKGFGIAMKTLDGGRIGIAAQALGIAEGAFEEAVNYMKERKQFRRPLSAQQGLQWYIAEMDVKIEAARHLVYKAACKKQNGQPYSVDAARAKLFAAEVAMDVTTKAVQIFGGYGYTKDYPVERMMRDAKITEIYEGTSEVQKMVIAGSILR
>NZ_CP006903.1|WP_003372598.1|2952779_2953562_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNIVVCVKQVPDTTAVKIDPKTGTLIRDGVPSIMNPEDKHALEGALQLKETLGAKVTVISMGLPMAKATLREALCMGADEAILLTDRALGGADTLATSKALAGVIAKLDYDLVFAGRQAIDGDTAQVGPEIAEHLNIPQVTYVQGVEAKGEGTLLVNRALEDGYEKIEIKTPCLLTAIEELNEARYMNVANIFSTNDDEIKVMSADDIDVDKAELGLKGSPTKVKKSMTKEVKGAGEVVNKPAKEAVTYVLGKLQEKHYI
>NZ_CP006903.1|WP_035786240.1|2953584_2954592_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIADYRGVWVFAEQREGELQKVSLELLGEGRKIADKLGVKLTALLLGNNIENLSKTLAEHGADEVLVADDKNLEHYTTDAYTKVICDLANERKPGILFIGATFIGRDLGPRVAARLSTGLTADCTSLDVEVEDGALLATRPAFGGNLMATIACPEHRPQMATVRPGVFGKVNTDGSKCTVEKVEVKLADSDVRTKVVEIIKAHKDVVDISEAKILVAGGRGMGSKENFTLLQELAEVLDGTVAGSRAAVDNGWLERDYQVGQTGKTVRPSIYIACGISGAIQHVAGMQESDMIIAINKDETAPIMQVADYAIVGDVKNVLPELIAQAKAVKSAE
>NZ_CP006903.1|WP_003369662.1|2954694_2955543_+|3-hydroxybutyryl-CoA-dehydrogenase
MKKVFVLGAGTMGAGIVQAFAQHGYEVIVRDIKDEFVERGIAGINKGLTKQVAKGRMTEEVKEEILSRISGTTDMKLAADCDLVVEAAIENMKIKREIFAELDEICKPETILASNTSSLSITEVASATKRADKVIGMHFFNPAPVMKLVEIIRGMATSQETFDAIKELTVAIEKNPVEVAEAPGFVVNRILIPMINEGIGILAEGIASVEDIDTAMKYGANHPMGPLALGDLIGLDVCLAIMDVLYNETGDTKYRAHSLLRKYVRAGWLGRKSGKGFYDYSR
>NZ_CP006903.1|WP_012423672.1|2955718_2956153_+|C-GCAxxG-C-C-family-protein
MLKETVIKYWDDKYDLNCAECLIYASNEEYDLNLSKDALKTMAAFGGGMAIGDVCGVISGAIAVIGIMFTDISGHKSPIVKEMTTDFINKFKNKLGSNNCIELRKEYRKSKKEGTCIVMVETAADILESIVKRDDNYKLDSNKY
>NZ_CP006903.1|WP_035786242.1|2956227_2957154_+|DNA-3-methyladenine-glycosylase-2-family-protein
MDYKSIETSENGVIIRGVKNFKLKHIFECGQVFRFEEIEEDNFIIIAFGKLIELVQRNNDVFIYNTTEKEFKEIWLNYFDLDRDYSIIKEELSKDELLKQSIEFGCGVRVLNQDPFEMLLSFIISARNSIPSIRKTVNKISEKWGNKIEYKGKIYYAFPTIEQIKDAKLDEIKETGASFRSKYLLDTIENVYNSINNNLDSSENEENLLKRYDLNYIKSLSDDECHVALQEFKGVGAKVADCIMLFSMGKTSSFPVDVWVKRAMMHFYNAEEGSLNKIRVFARNKFGKLSGFAQQYLFYYARENNIKV
>NZ_CP006903.1|WP_035786244.1|2957312_2958797_+|4Fe-4S-dicluster-domain-containing-protein
MFKFENQLIKLKHDVLSNIVRLAKEDNINKENLEKIPYEMLPGDEPQYRESVVHEREVLLERLKLASGFIPNGKGTDELVNIEDEKQILYVIKNACDMCPTKKFEVTDACRNCIAHKCQSVCNFGAITYVEGKAYIDPDKCKECGMCKKACPYDAIAEDMRPCKRSCPTGALDINSDKRAMIKQEKCVNCGACMAACPFGALEDRSLLVKIVKELTNNSNIYAVVAPAITGQLGPKTGYGQVKNAIKKLGFTDMVEAACGADAVTVHESNEFVHRMENGDPYMTNSCCPGFLSYIEKMMPDQVDRISGTVSPMVAAGRFIKANDKDAKVVFIGPCTAKKSEILRDSIKDAVDYVLTFEELLALFEGFNIDPANFYDIVVDEASIFGRGFGAGGGLTAAIENYIKDKGIECEFKPVKVSGGAEIKKTMMMAKMGRLPGNFIEGMMCEGGCINGSGKILSPMKAKASFNKVNQKASMKNVLENSKIDDYKDIDLER
>NZ_CP006903.1|WP_035786246.1|2958994_2959690_+|response-regulator-transcription-factor
MKILLVDDEESILNLIKMNLIFENYEVITAECGIDAINLFKSESPDLIVLDLMLPDKDGFEVIHEFQGINSEIPIIILSARDQLNNKLLGLQLGADDYITKPFDSRELILRIRAISRRINKAKASGKNEVKNKTTDIIEKGFIKIIIPERRVFIDDKEVIFTHIEFEIILLMVQNPFKVFTREELLDKIWGYSFVGNTRAVDIHIKRIRQKLVGNEDVIKTIYGVGYRLEV
>NZ_CP006903.1|WP_035786247.1|2959693_2961109_+|HAMP-domain-containing-histidine-kinase
MNWGIKGKIVIMNIFILIIAILSIYVVTIYTLYSRVINNSIDMLKKESYTSQSFVMKYLEMEDDFHVENVLNEMSPFIATYLSNGCKFRVQIYNNSSLIGDSDNYPNISKDDDVIAALKGNKSYIIRRIEESSYILFSSPIYYSDGTIGCIRYVYDLNNENTIITNTIFSMVLFAIVAIIFSSMMSNSFSNRIVRPIVSLKNIARKVSFGDFSKKISINSKDEIEDLSNSFNIMSNNIEIMIENLKEEKETQKRFLDNVTHEFKTPLAAILGYSDLLLRVKEKKDIEQCVKYIVQSSNRLLKLVEQLLDLSRLNKNELEVKNENIDIKAVIETAVMMLNPRMNKFGIKLNMNLVSKNVYADKEKTEQVILNLLDNAIKYSECTEIDIYMEHNEAYVIIYIADNGQGIPKEDLKNVFENFYTAHKALQKKYGGSGLGLAICKEFMEKQSGKIEISSLNGTTVKLSFKYAISN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP006903_1	1.1\|772868\|36\|NZ_CP006903\|CRISPRCasFinder	772868-772903	36	NZ_CP006903.1	1423908-1423943	0	1.0

1. spacer 1.1|772868|36|NZ_CP006903|CRISPRCasFinder matches to position: 1423908-1423943, mismatch: 0, identity: 1.0

aaattccaagtgggatagagaattagctaagcaaaa	CRISPR spacer
aaattccaagtgggatagagaattagctaagcaaaa	Protospacer
************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

335987 : 408856

Bacillus_phage(41.67%)

tail,transposase,integrase,tRNA

attL 389522:389540|attR 416659:416677

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100433884.1\|335987_337406_+\|tail	phage tail protein	NA	NA	NA	NA
WP_035787415.1\|337408_338005_+	hypothetical protein	NA	NA	NA	NA
WP_035787414.1\|338023_338548_+	hypothetical protein	NA	NA	NA	NA
WP_035787412.1\|338563_338956_+	DUF4280 domain-containing protein	NA	NA	NA	NA
WP_139015964.1\|338990_341840_+	hypothetical protein	NA	NA	NA	NA
WP_003371723.1\|341849_343286_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_035787410.1\|343454_344417_+	hypothetical protein	NA	NA	NA	NA
WP_035791462.1\|344826_346524_+	Hsp70 family protein	F2Y0P3	Organic_Lake_phycodnavirus	5.8e-83	37.8
WP_035791464.1\|346533_349818_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_035791465.1\|349996_350893_+	NUDIX domain-containing protein	A0A1B0V161	Roseobacter_phage	2.7e-07	36.1
WP_035791466.1\|351064_351868_+	ribose-phosphate pyrophosphokinase	A0A218KC69	Bacillus_phage	1.1e-47	42.1
WP_039310021.1\|351954_353424_+	nicotinate phosphoribosyltransferase	A0A218KC49	Bacillus_phage	7.6e-140	54.0
WP_035791468.1\|353602_354439_-	viral A-type inclusion protein	NA	NA	NA	NA
WP_035791470.1\|354610_356437_+	S8 family peptidase	NA	NA	NA	NA
WP_035791471.1\|356423_358145_+	S8 family peptidase	NA	NA	NA	NA
WP_035791475.1\|358304_359705_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_035787398.1\|360014_362318_+	bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB	NA	NA	NA	NA
WP_035787397.1\|362585_363095_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_035787396.1\|363178_364534_-	MATE family efflux transporter	NA	NA	NA	NA
WP_035787395.1\|364735_365047_-	hypothetical protein	NA	NA	NA	NA
WP_035782790.1\|365347_365992_+	hypothetical protein	NA	NA	NA	NA
WP_035782794.1\|366423_366963_+	hypothetical protein	NA	NA	NA	NA
WP_017353194.1\|366949_367348_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_035782797.1\|367331_368228_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.7e-21	30.7
WP_039307605.1\|368208_369258_+	hypothetical protein	NA	NA	NA	NA
WP_035791479.1\|369543_369843_+	hypothetical protein	NA	NA	NA	NA
WP_035782802.1\|370201_370912_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_012424009.1\|371085_371991_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_039307609.1\|372120_373419_+\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	3.2e-65	37.1
WP_012425770.1\|373437_373716_+	late competence development ComFB family protein	NA	NA	NA	NA
WP_035791485.1\|374024_374717_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.0e-38	37.9
WP_039307616.1\|374694_376935_+	sensor histidine kinase	W8CYF6	Bacillus_phage	5.2e-15	27.1
WP_035791488.1\|377259_378225_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_012424825.1\|378465_378696_+	hypothetical protein	NA	NA	NA	NA
WP_035782815.1\|378960_379482_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_012424033.1\|379682_379874_+	YwbE family protein	NA	NA	NA	NA
WP_154563536.1\|380724_380862_+	hypothetical protein	NA	NA	NA	NA
WP_039307627.1\|381046_382381_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_144313589.1\|382393_384802_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_039307634.1\|384791_386846_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_039307637.1\|386827_387337_+	hypothetical protein	NA	NA	NA	NA
WP_039310023.1\|387371_389573_+	DNA topoisomerase III	A0A0G2Y787	Acanthamoeba_polyphaga_mimivirus	5.3e-28	25.1
389522:389540	attL	NA	NA	NA	NA
WP_080315384.1\|389623_389836_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_039307640.1\|389993_390299_+\|transposase	transposase	NA	NA	NA	NA
WP_039307643.1\|390556_390799_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_039307645.1\|390845_391025_+	hypothetical protein	NA	NA	NA	NA
WP_039307649.1\|391520_391784_+	hypothetical protein	NA	NA	NA	NA
WP_039307652.1\|392220_392424_+	hypothetical protein	NA	NA	NA	NA
WP_158380742.1\|392452_392626_-	hypothetical protein	NA	NA	NA	NA
WP_039307656.1\|393802_395305_-	TULIP family P47-like protein	NA	NA	NA	NA
WP_039307660.1\|395759_398024_-	TULIP family P47-like protein	NA	NA	NA	NA
WP_173405946.1\|398037_398466_-	toxin	NA	NA	NA	NA
WP_039307662.1\|398759_400010_+	neurotoxin-associated TULIP family protein P47	NA	NA	NA	NA
WP_039307664.1\|400024_403522_+	non-toxic nonhemagglutinin NTNH	Q332E1	Clostridium_botulinum_C_phage	0.0e+00	57.8
WP_039307669.1\|403533_407361_+	botulinum neurotoxin type F	Q332E0	Clostridium_botulinum_C_phage	2.0e-176	33.3
WP_039307672.1\|408289_408856_+\|integrase	site-specific integrase	A0A1B0T6D2	Bacillus_phage	6.7e-36	45.1
416659:416677	attR	NA	NA	NA	NA

DBSCAN-SWA_2

524143 : 602961

Faecalibacterium_phage(29.41%)

plate,tRNA,portal,tail,terminase,holin,head,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_035793475.1\|524143_524656_+\|holin	choline-binding protein	NA	NA	NA	NA
WP_035782978.1\|525006_525327_+	hypothetical protein	A0A1V0SKV2	Klosneuvirus	3.3e-16	50.6
WP_154563533.1\|525704_525881_-	hypothetical protein	NA	NA	NA	NA
WP_035782979.1\|526154_527297_+	hypothetical protein	NA	NA	NA	NA
WP_039307802.1\|527773_529420_+	family 14 glycosylhydrolase	NA	NA	NA	NA
WP_035793484.1\|529489_530146_-	DUF5105 domain-containing protein	NA	NA	NA	NA
WP_035793488.1\|530571_531213_+	DUF488 domain-containing protein	NA	NA	NA	NA
WP_035782988.1\|531280_531667_-	colossin A	NA	NA	NA	NA
WP_035782989.1\|531838_532612_+	histidinol-phosphatase	NA	NA	NA	NA
WP_012423174.1\|532698_533190_+	L,D-transpeptidase	NA	NA	NA	NA
WP_035782995.1\|533419_534025_+	CoA pyrophosphatase	NA	NA	NA	NA
WP_012424964.1\|534332_534536_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_035793491.1\|534992_536891_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_035782999.1\|537300_538356_+	NAD(P)-dependent alcohol dehydrogenase	NA	NA	NA	NA
WP_035793494.1\|538517_539714_+	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_035793499.1\|541415_542618_+	putative hydroxymethylpyrimidine transporter CytX	NA	NA	NA	NA
WP_080288109.1\|542789_543437_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_035783008.1\|543531_543759_+	DUF1653 domain-containing protein	NA	NA	NA	NA
WP_039307808.1\|543901_545122_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_035793504.1\|545218_545872_+	(d)CMP kinase	NA	NA	NA	NA
WP_035793506.1\|545900_547808_+	bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1	NA	NA	NA	NA
WP_035783018.1\|547954_548812_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_035783020.1\|548856_549135_+	hypothetical protein	NA	NA	NA	NA
WP_052134051.1\|549707_551369_-	recombinase family protein	A0A0A7RUB1	Clostridium_phage	3.9e-193	60.3
WP_052134052.1\|551447_551954_-	helix-turn-helix transcriptional regulator	Q0SPH9	Clostridium_phage	7.9e-12	56.7
WP_154563530.1\|552197_552353_+	hypothetical protein	NA	NA	NA	NA
WP_039307815.1\|552434_552800_-	hypothetical protein	NA	NA	NA	NA
WP_154563527.1\|552917_553064_+	hypothetical protein	NA	NA	NA	NA
WP_039307818.1\|553086_553305_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	1.1e-15	69.6
WP_039307821.1\|553737_554589_+	hypothetical protein	Q0SPI6	Clostridium_phage	2.4e-45	45.1
WP_039307824.1\|554594_554774_+	hypothetical protein	NA	NA	NA	NA
WP_039307826.1\|554818_555583_+	ParA family protein	H7BUL8	unidentified_phage	6.3e-45	38.9
WP_039307828.1\|555844_556087_+	hypothetical protein	NA	NA	NA	NA
WP_039307831.1\|556128_557094_+	ParB/RepB/Spo0J family partition protein	H7BVD1	unidentified_phage	1.9e-30	35.8
WP_039307834.1\|557219_557342_+	aspartyl-phosphate phosphatase Spo0E family protein	NA	NA	NA	NA
WP_039307838.1\|557367_557571_+	hypothetical protein	NA	NA	NA	NA
WP_039307842.1\|557710_558382_+	manganese catalase family protein	NA	NA	NA	NA
WP_039307845.1\|558918_559473_+	hypothetical protein	A0A2H4J015	uncultured_Caudovirales_phage	3.5e-05	31.9
WP_035791616.1\|559677_559884_+	hypothetical protein	A0A1L2BY88	Clostridium_phage	6.3e-08	44.1
WP_039307850.1\|560076_560592_+	hypothetical protein	NA	NA	NA	NA
WP_039307854.1\|560611_562456_+\|terminase	phage terminase large subunit family protein	A0A2K9V301	Faecalibacterium_phage	6.7e-202	59.4
WP_039307857.1\|562471_562696_+	hypothetical protein	A0A2K9V311	Faecalibacterium_phage	1.7e-14	62.0
WP_039307860.1\|562705_564190_+\|portal	phage portal protein	A0A2K9V303	Faecalibacterium_phage	2.0e-188	65.0
WP_052134053.1\|564167_564815_+\|head,protease	HK97 family phage prohead protease	A0A2K9V308	Faecalibacterium_phage	2.8e-62	65.0
WP_039307863.1\|564816_566316_+	hypothetical protein	A0A2K9V304	Faecalibacterium_phage	4.7e-161	56.6
WP_039307866.1\|566328_566661_+	DUF2190 family protein	A0A2K9V343	Faecalibacterium_phage	4.8e-18	45.0
WP_052134054.1\|566669_566969_+	hypothetical protein	NA	NA	NA	NA
WP_039310049.1\|566974_567289_+	hypothetical protein	A0A2K9V315	Faecalibacterium_phage	1.6e-07	29.6
WP_039307869.1\|567288_567858_+\|tail	phage tail protein	NA	NA	NA	NA
WP_039307871.1\|567870_568416_+	hypothetical protein	NA	NA	NA	NA
WP_039307873.1\|568428_569859_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A2K9V2R6	Faecalibacterium_phage	1.6e-73	35.0
WP_039307875.1\|569865_570396_+\|tail	phage major tail tube protein	A0A0C5AJ56	Bacteriophage	1.8e-19	35.8
WP_039307877.1\|570458_570800_+	hypothetical protein	NA	NA	NA	NA
WP_039307879.1\|570963_573171_+	TMP repeat family protein	A0A1U9WQS5	Geobacillus_phage	9.0e-44	40.6
WP_039307880.1\|573163_573376_+\|tail	tail protein X	A0A2K9V2S8	Faecalibacterium_phage	2.0e-09	44.6
WP_039307882.1\|573363_574293_+	hypothetical protein	A0A2K9V2R4	Faecalibacterium_phage	4.7e-34	32.9
WP_039307885.1\|574292_574529_+	hypothetical protein	NA	NA	NA	NA
WP_039307887.1\|574536_575091_+\|tail	phage tail protein	NA	NA	NA	NA
WP_039307889.1\|575093_575411_+	hypothetical protein	NA	NA	NA	NA
WP_039307891.1\|575400_576555_+\|plate	baseplate J/gp47 family protein	A0A059WFM2	Vibrio_phage	1.7e-54	33.5
WP_052134055.1\|576554_577214_+\|tail	phage tail protein I	A0A0C5AJ63	Bacteriophage	1.3e-25	33.9
WP_039307894.1\|577213_577867_+\|tail	phage tail protein	A0A2H4J039	uncultured_Caudovirales_phage	7.7e-52	50.0
WP_100433871.1\|577878_578250_+	collagen-like protein	NA	NA	NA	NA
WP_052134057.1\|578263_579073_+\|tail	tail fiber protein	NA	NA	NA	NA
WP_039307897.1\|579091_579397_+	hypothetical protein	NA	NA	NA	NA
WP_080288065.1\|579400_579553_+	XkdX family protein	NA	NA	NA	NA
WP_080315410.1\|580075_581380_+	Vps62-related protein	A0A1L2BYA9	Clostridium_phage	5.7e-54	57.3
WP_039307903.1\|581425_582598_+	Ig-like domain-containing protein	A0A1L2BYA9	Clostridium_phage	4.0e-51	51.7
WP_039307906.1\|582881_583106_+	hemolysin XhlA family protein	NA	NA	NA	NA
WP_039307909.1\|583107_583398_+\|holin	phage holin family protein	A0A0A8WF70	Clostridium_phage	1.4e-13	46.2
WP_144313592.1\|583461_585336_+	glycoside hydrolase family protein	A0A142EZW8	Stenotrophomonas_phage	5.9e-12	34.2
WP_039307912.1\|585634_586693_+	hypothetical protein	NA	NA	NA	NA
WP_100433874.1\|587186_587588_+	DUF3862 domain-containing protein	A0A1L2BYB5	Clostridium_phage	3.9e-46	68.4
WP_039307915.1\|587685_588522_+	hypothetical protein	A6M984	Geobacillus_virus	1.5e-28	34.3
WP_039307918.1\|588720_588933_-	hypothetical protein	NA	NA	NA	NA
WP_039307921.1\|589101_589779_+	helix-turn-helix domain-containing protein	A0A1L2BY83	Clostridium_phage	1.1e-05	37.0
WP_039307924.1\|589804_590032_+	hypothetical protein	NA	NA	NA	NA
WP_052134059.1\|590211_591771_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_039307928.1\|591745_592696_+	plasmid recombination protein	M1NXP9	Cellulophaga_phage	3.0e-12	26.8
WP_158380744.1\|592716_593232_+	hypothetical protein	NA	NA	NA	NA
WP_158380745.1\|593215_593383_+	hypothetical protein	NA	NA	NA	NA
WP_039307934.1\|593735_595100_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_035783024.1\|595458_595938_-\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_035787337.1\|596633_597623_+	tyrosine recombinase XerC	A0A2R2ZHE2	Clostridioides_phage	7.4e-22	29.8
WP_035787247.1\|597738_598272_-	YtxH domain-containing protein	NA	NA	NA	NA
WP_035787245.1\|598444_598936_-	hypothetical protein	NA	NA	NA	NA
WP_012424814.1\|599005_599437_-	hypothetical protein	NA	NA	NA	NA
WP_035787244.1\|599600_600206_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	3.8e-13	54.7
WP_035787243.1\|600383_601673_-	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_035787242.1\|601748_601982_-	RNA chaperone Hfq	NA	NA	NA	NA
WP_035787241.1\|602031_602961_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA

DBSCAN-SWA_3

785608 : 836059

Clostridium_phage(48.57%)

plate,tail,portal,holin,head,integrase

attL 808261:808277|attR 827905:827921

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039308130.1\|785608_786481_-	ParM/StbA family protein	Q0SPH6	Clostridium_phage	8.0e-20	29.1
WP_039308134.1\|786613_786817_-	helix-turn-helix domain-containing protein	A0A2H4J765	uncultured_Caudovirales_phage	5.6e-17	68.7
WP_154563481.1\|786819_786972_-	hypothetical protein	NA	NA	NA	NA
WP_039308137.1\|787096_787342_+	hypothetical protein	NA	NA	NA	NA
WP_039308140.1\|787360_787765_+	hypothetical protein	NA	NA	NA	NA
WP_039308143.1\|787811_788156_-	recombinase family protein	NA	NA	NA	NA
WP_052134061.1\|788311_788521_-	hypothetical protein	A0A0K2SU85	Clostridium_phage	2.2e-08	41.9
WP_039308146.1\|788775_789843_-	hypothetical protein	M9Q255	Clostridium_phage	1.6e-99	53.4
WP_039308149.1\|789808_791047_-	hypothetical protein	M9Q2I6	Clostridium_phage	1.6e-85	40.3
WP_039308152.1\|791425_792217_-	glycoside hydrolase family protein	B5WZU3	Pseudomonas_phage	1.6e-14	38.5
WP_035786889.1\|792273_792534_-\|holin	phage holin family protein	A0A0A8WF70	Clostridium_phage	4.8e-13	47.0
WP_039308156.1\|792535_792760_-	hemolysin XhlA	NA	NA	NA	NA
WP_035786883.1\|793022_793202_-	hypothetical protein	NA	NA	NA	NA
WP_039308159.1\|793220_793487_-	hypothetical protein	NA	NA	NA	NA
WP_039308161.1\|794649_795261_-	YmfQ family protein	A0A0A7RTT8	Clostridium_phage	2.3e-42	41.7
WP_039308164.1\|795250_796330_-\|plate	baseplate J/gp47 family protein	A0A0A7RUN3	Clostridium_phage	2.5e-55	39.7
WP_039308167.1\|796336_796765_-	DUF2634 domain-containing protein	NA	NA	NA	NA
WP_039308170.1\|796779_797112_-	DUF2577 family protein	NA	NA	NA	NA
WP_052134062.1\|797123_799118_-	C40 family peptidase	X5JAJ3	Clostridium_phage	3.8e-09	28.3
WP_052134063.1\|799131_799758_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_052134064.1\|799769_801608_-	hypothetical protein	NA	NA	NA	NA
WP_017352107.1\|801608_801764_-	hypothetical protein	NA	NA	NA	NA
WP_052134065.1\|801787_802171_-	hypothetical protein	NA	NA	NA	NA
WP_017352105.1\|802224_802650_-	hypothetical protein	NA	NA	NA	NA
WP_039308175.1\|802665_803736_-\|tail	phage tail sheath subtilisin-like domain-containing protein	NA	NA	NA	NA
WP_039308178.1\|803732_804200_-	hypothetical protein	NA	NA	NA	NA
WP_052134066.1\|804189_804597_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_039308182.1\|804583_804940_-	hypothetical protein	NA	NA	NA	NA
WP_052134067.1\|804951_805281_-\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_039308185.1\|805270_805510_-	Rho termination factor N-terminal domain-containing protein	NA	NA	NA	NA
WP_039308188.1\|805556_806507_-	hypothetical protein	A0A1V0DZW0	Clostridioides_phage	4.2e-91	56.1
WP_039308191.1\|806542_807130_-	DUF4355 domain-containing protein	A0A1V0DZW6	Clostridioides_phage	2.3e-26	37.9
WP_039308193.1\|807245_807692_-	hypothetical protein	M9Q2I2	Clostridium_phage	5.5e-41	57.3
WP_039308195.1\|807691_808078_-	hypothetical protein	A0A2H4J4N9	uncultured_Caudovirales_phage	2.4e-37	66.4
WP_173405948.1\|808222_808363_-	hypothetical protein	A0A0A7RTU6	Clostridium_phage	1.8e-06	57.1
808261:808277	attL	NA	NA	NA	NA
WP_173405949.1\|808414_808588_-	hypothetical protein	A0A0A8WI08	Clostridium_phage	2.3e-11	55.6
WP_039308197.1\|808608_808953_-	hypothetical protein	NA	NA	NA	NA
WP_039308200.1\|809092_809848_+	hypothetical protein	NA	NA	NA	NA
WP_039308203.1\|809821_810016_-	hypothetical protein	NA	NA	NA	NA
WP_039308206.1\|810062_810965_-	alpha-dextrin endo-1, 6-alpha-glucosidase	H7BWE7	unidentified_phage	2.7e-10	26.7
WP_039308210.1\|810957_812286_-\|portal	phage portal protein	A0A1V0DZW8	Clostridioides_phage	1.5e-78	41.9
WP_039308213.1\|812300_814067_-	hypothetical protein	A0A1V0DZW7	Clostridioides_phage	2.3e-106	36.7
WP_039308216.1\|814126_814792_-	hypothetical protein	NA	NA	NA	NA
WP_039308219.1\|814882_815143_-	hypothetical protein	NA	NA	NA	NA
WP_039308222.1\|815212_815431_-	hypothetical protein	NA	NA	NA	NA
WP_039308224.1\|815475_816138_-	recombinase family protein	NA	NA	NA	NA
WP_039308228.1\|816382_816808_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_039308231.1\|817078_817759_-	hypothetical protein	NA	NA	NA	NA
WP_173405950.1\|817762_817933_-	hypothetical protein	NA	NA	NA	NA
WP_039308234.1\|817988_818678_-	Rha family transcriptional regulator	A0A0A7RVU3	Clostridium_phage	3.0e-38	45.1
WP_039308237.1\|819168_819384_-	hypothetical protein	NA	NA	NA	NA
WP_039308239.1\|819415_819601_-	hypothetical protein	NA	NA	NA	NA
WP_039308242.1\|819714_820239_-	hypothetical protein	A0A0A7RVS1	Clostridium_phage	3.3e-05	24.2
WP_173405951.1\|820263_820413_-	hypothetical protein	NA	NA	NA	NA
WP_039308245.1\|820416_820833_-	hypothetical protein	NA	NA	NA	NA
WP_039308248.1\|820836_821157_-	hypothetical protein	NA	NA	NA	NA
WP_039308251.1\|821157_821409_-	sporulation transcriptional regulator SpoIIID	M9Q261	Clostridium_phage	1.1e-11	49.3
WP_039308255.1\|821496_821691_-	hypothetical protein	NA	NA	NA	NA
WP_039308258.1\|821702_822116_-	single-stranded DNA-binding protein	A0A290GHL8	Caldibacillus_phage	9.9e-29	49.3
WP_039308260.1\|822136_822532_-	RusA family crossover junction endodeoxyribonuclease	X2CXX1	Lactobacillus_phage	2.5e-13	35.5
WP_039308262.1\|822553_823594_-	nucleoid-associated protein	Q24LD5	Clostridium_phage	3.5e-06	31.4
WP_039308265.1\|823613_824621_-\|integrase	tyrosine-type recombinase/integrase	S5M9V8	Brevibacillus_phage	3.2e-12	27.3
WP_039308268.1\|824715_825012_-	hypothetical protein	NA	NA	NA	NA
WP_039308272.1\|825050_825272_-	hypothetical protein	NA	NA	NA	NA
WP_154563450.1\|825316_825484_-	hypothetical protein	NA	NA	NA	NA
WP_154563447.1\|825501_825654_-	hypothetical protein	NA	NA	NA	NA
WP_154563444.1\|825720_825885_-	hypothetical protein	NA	NA	NA	NA
WP_154563441.1\|825907_826078_-	hypothetical protein	NA	NA	NA	NA
WP_039308275.1\|826087_826429_-	hypothetical protein	NA	NA	NA	NA
WP_052134102.1\|826421_826988_-	hypothetical protein	A0A2H4J8I2	uncultured_Caudovirales_phage	5.0e-31	39.6
WP_154563438.1\|827036_827189_-	hypothetical protein	NA	NA	NA	NA
WP_039308281.1\|827182_827506_-	hypothetical protein	NA	NA	NA	NA
WP_039308283.1\|827524_827710_-	hypothetical protein	NA	NA	NA	NA
WP_039308286.1\|827732_827921_-	hypothetical protein	NA	NA	NA	NA
827905:827921	attR	NA	NA	NA	NA
WP_039308288.1\|827950_828286_-	hypothetical protein	NA	NA	NA	NA
WP_154563435.1\|828453_828603_-	hypothetical protein	NA	NA	NA	NA
WP_052134068.1\|828603_829347_-	hypothetical protein	A0A0B5D175	Listeria_phage	5.9e-40	60.6
WP_052134069.1\|829355_829934_-	ERF family protein	Q9B0G3	Staphylococcus_virus	9.0e-36	48.3
WP_039308291.1\|829946_830459_-	host-nuclease inhibitor Gam family protein	A0A0A7S0G6	Clostridium_phage	1.4e-37	47.1
WP_039308293.1\|830471_830885_-	hypothetical protein	NA	NA	NA	NA
WP_154563432.1\|831343_831496_-	hypothetical protein	NA	NA	NA	NA
WP_039308295.1\|831596_831848_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	3.2e-14	53.7
WP_039308298.1\|831926_832196_+	hypothetical protein	A0A1W6JPU7	Staphylococcus_phage	3.9e-10	43.2
WP_035791181.1\|832192_832609_-	hypothetical protein	NA	NA	NA	NA
WP_039308302.1\|832640_833327_-	phage antirepressor KilAC domain-containing protein	A0A2D1GQ65	Lysinibacillus_phage	7.4e-53	51.1
WP_039308305.1\|833739_833970_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_039308308.1\|834233_834593_+	helix-turn-helix transcriptional regulator	A0A139ZPI6	Marinitoga_camini_virus	9.3e-07	32.0
WP_039308312.1\|834592_836059_+	recombinase family protein	A0A1L2BY67	Clostridium_phage	3.0e-80	41.0

DBSCAN-SWA_4

849281 : 896346

uncultured_Caudovirales_phage(41.03%)

capsid,coat,plate,tail,portal,terminase,holin,integrase

attL 866672:866688|attR 905592:905608

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_035786891.1\|849281_850067_-	glycoside hydrolase family protein	A0A0S2SYD0	Pseudomonas_phage	8.2e-16	38.6
WP_035786889.1\|850122_850383_-\|holin	phage holin family protein	A0A0A8WF70	Clostridium_phage	4.8e-13	47.0
WP_035786887.1\|850384_850609_-	hemolysin XhlA	NA	NA	NA	NA
WP_035786884.1\|850689_851925_-	Ig-like domain-containing protein	A0A1L2BYA9	Clostridium_phage	1.1e-49	53.3
WP_035786883.1\|852349_852529_-	hypothetical protein	NA	NA	NA	NA
WP_035791879.1\|852530_852815_-	hypothetical protein	NA	NA	NA	NA
WP_039308325.1\|852828_853092_-	hypothetical protein	NA	NA	NA	NA
WP_052134071.1\|853066_853975_-\|tail	phage tail protein	A0A2H4J039	uncultured_Caudovirales_phage	7.2e-48	58.7
WP_051982703.1\|853980_854631_-	YmfQ family protein	A0A2H4J1P4	uncultured_Caudovirales_phage	5.9e-52	47.4
WP_035791880.1\|854617_855739_-\|plate	baseplate J/gp47 family protein	A0A2H4J7K8	uncultured_Caudovirales_phage	5.0e-107	53.7
WP_039308326.1\|855747_856185_-	DUF2634 domain-containing protein	A0A2H4J4Q8	uncultured_Caudovirales_phage	7.3e-30	49.0
WP_035786880.1\|856177_856519_-	hypothetical protein	A0A2H4J746	uncultured_Caudovirales_phage	3.1e-20	51.0
WP_035786878.1\|856508_857528_-	hypothetical protein	A0A2H4J063	uncultured_Caudovirales_phage	1.3e-82	49.3
WP_035786877.1\|857535_858225_-	SH3 domain-containing protein	A0A2H4J045	uncultured_Caudovirales_phage	1.8e-46	41.7
WP_035786876.1\|858352_858943_-	DUF4352 domain-containing protein	NA	NA	NA	NA
WP_035786874.1\|858983_862043_-\|tail	phage tail tape measure protein	A0A2H4J055	uncultured_Caudovirales_phage	2.0e-89	39.3
WP_012423050.1\|862252_862696_-	hypothetical protein	A0A2H4J883	uncultured_Caudovirales_phage	5.5e-25	47.1
WP_012422818.1\|862751_863174_-\|tail	phage tail tube protein	A0A2H4J032	uncultured_Caudovirales_phage	6.1e-34	50.4
WP_035786872.1\|863189_864605_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A2H4J1N7	uncultured_Caudovirales_phage	2.4e-122	49.0
WP_173405976.1\|864605_864812_-	hypothetical protein	B6SBT6	Clostridium_virus	6.9e-07	46.0
WP_039308332.1\|864811_865639_-	hypothetical protein	A0A2H4J4Q0	uncultured_Caudovirales_phage	2.3e-85	55.8
WP_035786869.1\|865641_866067_-	hypothetical protein	A0A0N7ACC6	Bacillus_phage	5.3e-17	38.0
WP_035786866.1\|866464_866785_-	hypothetical protein	A0A2H4J040	uncultured_Caudovirales_phage	2.3e-25	54.5
866672:866688	attL	NA	NA	NA	NA
WP_012424276.1\|866787_866982_-	hypothetical protein	NA	NA	NA	NA
WP_035786864.1\|867040_868078_-\|capsid	major capsid protein	A0A0A7RU11	Clostridium_phage	2.8e-120	61.6
WP_012425779.1\|868091_868430_-	hypothetical protein	A0A0A7RU46	Clostridium_phage	5.4e-17	46.4
WP_035786861.1\|868443_869076_-	phage scaffolding protein	A0A0K2CP96	Brevibacillus_phage	3.6e-14	33.3
WP_035786860.1\|869211_869658_-	hypothetical protein	M9Q2I2	Clostridium_phage	9.3e-41	58.0
WP_035786857.1\|869730_870072_-	hypothetical protein	A0A0A8WIH8	Clostridium_phage	1.0e-18	48.6
WP_035786855.1\|870050_870371_-	hypothetical protein	NA	NA	NA	NA
WP_052134072.1\|870480_871152_-	hypothetical protein	A0A0A7RVU3	Clostridium_phage	4.9e-25	34.8
WP_035786853.1\|871373_872384_-	hypothetical protein	A0A2H4J048	uncultured_Caudovirales_phage	5.7e-62	40.5
WP_035786852.1\|872396_873908_-\|portal	phage portal protein	D9ZNC8	Clostridium_phage	3.9e-139	53.1
WP_039308340.1\|873907_875221_-\|terminase	PBSX family phage terminase large subunit	E5DV50	Deep-sea_thermophilic_phage	6.0e-104	48.2
WP_035786849.1\|875210_876125_-\|terminase	terminase small subunit	Q5YA77	Bacillus_phage	2.6e-45	47.4
WP_012423560.1\|876162_876312_-	hypothetical protein	NA	NA	NA	NA
WP_173405952.1\|876317_876485_-	hypothetical protein	NA	NA	NA	NA
WP_035786848.1\|876552_877350_-	hypothetical protein	NA	NA	NA	NA
WP_035786847.1\|877633_878356_-	hypothetical protein	NA	NA	NA	NA
WP_035786845.1\|878442_878964_-	transcriptional regulator	NA	NA	NA	NA
WP_035786843.1\|878981_879623_-	hypothetical protein	A0A2K9VNW2	Shigella_phage	5.2e-08	29.6
WP_035786842.1\|879622_879931_-	hypothetical protein	NA	NA	NA	NA
WP_039308344.1\|880004_880505_-	Holliday junction resolvase RecU	D9ZNH9	Clostridium_phage	1.5e-18	34.6
WP_173405953.1\|880498_880648_-	hypothetical protein	NA	NA	NA	NA
WP_035786839.1\|880659_881424_-	ORF6C domain-containing protein	A0A0A8WFN9	Clostridium_phage	1.1e-70	53.7
WP_035786835.1\|882728_883136_-	hypothetical protein	NA	NA	NA	NA
WP_035786834.1\|883272_883521_-\|coat	spore coat protein	NA	NA	NA	NA
WP_035786833.1\|883533_883719_-	hypothetical protein	NA	NA	NA	NA
WP_035786832.1\|883834_884506_-	manganese catalase family protein	NA	NA	NA	NA
WP_035786829.1\|884630_884834_-	hypothetical protein	NA	NA	NA	NA
WP_035786828.1\|884860_885115_-	hypothetical protein	NA	NA	NA	NA
WP_035786827.1\|885114_885354_-	hypothetical protein	NA	NA	NA	NA
WP_035786826.1\|885381_885813_-	hypothetical protein	NA	NA	NA	NA
WP_100433869.1\|885858_886020_-	mszf55-1	NA	NA	NA	NA
WP_035786825.1\|886056_886479_-	single-stranded DNA-binding protein	A0A290GHL8	Caldibacillus_phage	1.1e-27	61.2
WP_035787300.1\|886471_886765_-	hypothetical protein	Q0SPI4	Clostridium_phage	6.2e-09	37.2
WP_051982706.1\|886863_887487_-	HNH endonuclease	A0A2H4JEM6	uncultured_Caudovirales_phage	1.1e-23	33.0
WP_035786824.1\|887490_887724_-	hypothetical protein	A0A2H4JCC5	uncultured_Caudovirales_phage	1.2e-15	60.0
WP_039310103.1\|887736_888507_-	hypothetical protein	NA	NA	NA	NA
WP_035792022.1\|888499_888814_-	hypothetical protein	NA	NA	NA	NA
WP_035786822.1\|888785_889091_-	hypothetical protein	NA	NA	NA	NA
WP_039308353.1\|890013_890724_-	MBL fold metallo-hydrolase	A0A1L2JY21	Aeribacillus_phage	9.9e-53	45.6
WP_035786819.1\|890723_891467_-	hypothetical protein	A0A2I7RZ22	Vibrio_phage	4.8e-42	42.4
WP_173405954.1\|893710_893872_-	hypothetical protein	NA	NA	NA	NA
WP_035786814.1\|894030_894315_-	hypothetical protein	NA	NA	NA	NA
WP_079991398.1\|894348_894522_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_035786812.1\|894778_895135_+	helix-turn-helix transcriptional regulator	I3VYY8	Thermoanaerobacterium_phage	9.2e-07	30.5
WP_035792024.1\|895269_896346_+\|integrase	site-specific integrase	Q24LF5	Clostridium_phage	5.4e-10	25.6
905592:905608	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1082819 : 1095725

Clostridium_phage(41.67%)

tail,terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039308529.1\|1082819_1083899_-\|tail	phage tail sheath protein	A0A0A7S0D2	Clostridium_phage	2.3e-29	31.2
WP_039308532.1\|1083955_1084399_-	hypothetical protein	NA	NA	NA	NA
WP_039308535.1\|1084395_1084812_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_039308537.1\|1084804_1085152_-	hypothetical protein	NA	NA	NA	NA
WP_039308540.1\|1085154_1085439_-	hypothetical protein	NA	NA	NA	NA
WP_100433904.1\|1085450_1085690_-	Rho termination factor N-terminal domain-containing protein	A0A090D801	Clostridium_phage	4.4e-05	40.5
WP_039308547.1\|1085718_1086630_-	hypothetical protein	A0A1V0DZW0	Clostridioides_phage	1.0e-97	58.2
WP_052134077.1\|1086664_1087255_-	DUF4355 domain-containing protein	A0A1V0DZW6	Clostridioides_phage	2.5e-17	29.2
WP_039308550.1\|1087465_1087831_-	hypothetical protein	A0A2H4J4N9	uncultured_Caudovirales_phage	2.6e-33	62.8
WP_173405959.1\|1087974_1088115_-	hypothetical protein	A0A0A7RTU6	Clostridium_phage	4.0e-06	54.3
WP_039308553.1\|1088136_1088481_-	hypothetical protein	NA	NA	NA	NA
WP_039308556.1\|1088524_1089424_-	alpha-dextrin endo-1, 6-alpha-glucosidase	G8FUZ0	Pediococcus_virus	1.2e-07	26.8
WP_039308559.1\|1089416_1090781_-\|portal	phage portal protein	A0A1V0DZW8	Clostridioides_phage	1.8e-58	35.9
WP_039308562.1\|1090795_1092565_-\|terminase	terminase	A0A1V0DZW7	Clostridioides_phage	1.7e-101	36.1
WP_052134078.1\|1092596_1093157_-	HNH endonuclease	X2KXT0	Enterococcus_phage	1.6e-18	45.2
WP_039308565.1\|1093629_1094055_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_039308567.1\|1094421_1094862_-	xanthine dehydrogenase	A0A090EUN5	Clostridium_phage	1.5e-11	36.7
WP_173405960.1\|1094851_1095022_-	hypothetical protein	NA	NA	NA	NA
WP_039308569.1\|1095443_1095725_-	DUF1599 domain-containing protein	D9ZNJ8	Clostridium_phage	1.6e-17	56.2

DBSCAN-SWA_6

1208652 : 1269642

Clostridium_phage(45.45%)

capsid,tail,portal,terminase,holin,head,integrase,protease

attL 1265923:1265939|attR 1274130:1274146

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_035786546.1\|1208652_1208904_-\|holin	phage holin family protein	A0A0A7RW97	Clostridium_phage	1.7e-15	52.6
WP_173405962.1\|1209122_1209290_-	hypothetical protein	NA	NA	NA	NA
WP_035792256.1\|1209623_1210631_-\|protease	serine protease	NA	NA	NA	NA
WP_039308717.1\|1211015_1214531_-	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_035786543.1\|1214901_1216032_-	glycerate kinase	W6LM47	Streptococcus_phage	2.2e-46	38.2
WP_035792264.1\|1216082_1217339_-	GntP family permease	NA	NA	NA	NA
WP_035786541.1\|1217504_1218569_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_035786539.1\|1218925_1219516_-	DUF4878 domain-containing protein	NA	NA	NA	NA
WP_003372027.1\|1219900_1220056_-	zinc-ribbon domain-containing protein	NA	NA	NA	NA
WP_035786537.1\|1220427_1221705_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_035786536.1\|1221701_1222691_-	sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein	NA	NA	NA	NA
WP_035792266.1\|1223017_1223791_+	peroxide stress protein YaaA	NA	NA	NA	NA
WP_035786532.1\|1224044_1224914_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_035786530.1\|1225104_1225671_+	DUF2953 domain-containing protein	NA	NA	NA	NA
WP_035786528.1\|1225660_1226143_+	GerW family sporulation protein	NA	NA	NA	NA
WP_035786526.1\|1226325_1226919_-	segregation/condensation protein B	A0A1B1IVT7	uncultured_Mediterranean_phage	4.6e-19	36.0
WP_035786524.1\|1226902_1227658_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	3.3e-06	24.4
WP_035786522.1\|1227899_1229090_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	8.9e-30	29.6
WP_039308722.1\|1229816_1230575_-	N-acetylmuramoyl-L-alanine amidase	A0A1L2BYB1	Clostridium_phage	6.6e-103	71.9
WP_039308726.1\|1230637_1230814_-	hypothetical protein	NA	NA	NA	NA
WP_039308730.1\|1230826_1231027_-	UviB-like protein	A0A2H4JAI7	uncultured_Caudovirales_phage	9.3e-17	66.2
WP_039308733.1\|1231100_1232108_-	Ig-like domain-containing protein	A0A2H4J270	uncultured_Caudovirales_phage	9.6e-17	33.2
WP_039308736.1\|1232151_1233339_-	Ig-like domain-containing protein	A0A1L2BYA9	Clostridium_phage	1.5e-53	54.8
WP_039308739.1\|1233633_1234338_-	hypothetical protein	NA	NA	NA	NA
WP_039308745.1\|1234594_1234786_-	hypothetical protein	NA	NA	NA	NA
WP_039308748.1\|1234786_1235131_-	hypothetical protein	NA	NA	NA	NA
WP_039308751.1\|1236617_1238348_-\|tail	phage tail protein	A0A1L2BYA1	Clostridium_phage	1.2e-51	31.2
WP_012449476.1\|1238344_1239019_-\|tail	phage tail family protein	Q938K2	Temperate_phage	1.4e-08	29.7
WP_039308755.1\|1239034_1242499_-\|tail	phage tail tape measure protein	B6CXF2	Clostridium_phage	1.8e-75	38.8
WP_012423664.1\|1242549_1242813_-	hypothetical protein	NA	NA	NA	NA
WP_039308760.1\|1242815_1243139_-	hypothetical protein	NA	NA	NA	NA
WP_039308764.1\|1243141_1243723_-	hypothetical protein	NA	NA	NA	NA
WP_039308767.1\|1243725_1244046_-	hypothetical protein	NA	NA	NA	NA
WP_039308770.1\|1244038_1244428_-	hypothetical protein	A0A1S5SFC4	Streptococcus_phage	2.1e-12	39.8
WP_039308773.1\|1244427_1244763_-\|head	phage head closure protein	NA	NA	NA	NA
WP_012449861.1\|1244737_1245067_-	hypothetical protein	Q8W603	Listeria_phage	1.4e-12	42.9
WP_012450618.1\|1245081_1246278_-\|capsid	phage major capsid protein	E2ELI5	Clostridium_phage	7.5e-69	38.8
WP_039308779.1\|1246277_1247069_-\|protease	Clp protease ClpP	A0A0K2CXQ5	Paenibacillus_phage	1.6e-38	44.8
WP_039308782.1\|1247070_1248219_-\|portal	phage portal protein	E2ELI3	Clostridium_phage	3.2e-69	41.3
WP_039308784.1\|1248267_1249911_-\|terminase	terminase large subunit	E2ELI2	Clostridium_phage	1.3e-127	43.0
WP_039308786.1\|1249900_1250401_-	DNA-directed RNA polymerase sigma-70 factor	E2ELI1	Clostridium_phage	1.3e-35	44.5
WP_039308788.1\|1250557_1250884_-	HNH endonuclease	A0A1S7FZ53	Listeria_phage	3.3e-19	47.2
WP_017353006.1\|1250871_1251189_-	hypothetical protein	NA	NA	NA	NA
WP_039308792.1\|1251392_1251935_-\|integrase	site-specific integrase	E2ELN7	Clostridium_phage	2.4e-46	48.9
WP_017353008.1\|1251931_1252168_-	hypothetical protein	NA	NA	NA	NA
WP_173405963.1\|1252422_1252572_-	hypothetical protein	NA	NA	NA	NA
WP_039308795.1\|1252810_1254004_-	amidohydrolase	NA	NA	NA	NA
WP_017353010.1\|1254197_1254587_-	nitroreductase	A0A0A7RTL7	Clostridium_phage	6.7e-19	40.5
WP_052134082.1\|1254734_1254986_-	site-specific DNA-methyltransferase	A0A2L0V041	Agrobacterium_phage	1.8e-12	49.3
WP_154563504.1\|1255099_1255261_+	hypothetical protein	NA	NA	NA	NA
WP_017353012.1\|1255441_1256056_-	DUF2238 domain-containing protein	NA	NA	NA	NA
WP_173405964.1\|1256481_1256637_-	hypothetical protein	NA	NA	NA	NA
WP_039308799.1\|1256626_1256818_-	hypothetical protein	NA	NA	NA	NA
WP_039308802.1\|1256801_1258118_-	replicative DNA helicase	Q1MVI0	Enterobacteria_phage	4.2e-73	39.8
WP_039308805.1\|1258119_1258956_-	helix-turn-helix domain-containing protein	A0A2H4IYS0	uncultured_Caudovirales_phage	4.8e-14	38.3
WP_039308808.1\|1259070_1260201_-	ParB N-terminal domain-containing protein	Q4ZC37	Staphylococcus_virus	4.2e-13	27.0
WP_039308812.1\|1260185_1260941_-	ParA family protein	A0A1X9IGI7	Lactococcus_phage	9.7e-22	30.1
WP_039308815.1\|1261163_1261412_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_039308818.1\|1261424_1261859_-	helix-turn-helix domain-containing protein	A0A1L2BY71	Clostridium_phage	4.4e-35	54.9
WP_003373629.1\|1261983_1262181_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_039308824.1\|1262334_1262679_+	helix-turn-helix transcriptional regulator	A0A1L2BY72	Clostridium_phage	1.3e-29	61.3
WP_039308827.1\|1262774_1263605_+	hypothetical protein	NA	NA	NA	NA
WP_039308829.1\|1263632_1264703_-	MBL fold metallo-hydrolase	Q332C0	Clostridium_botulinum_C_phage	2.4e-90	63.4
WP_144313595.1\|1265058_1265463_-	hypothetical protein	NA	NA	NA	NA
WP_039310147.1\|1265579_1266146_-	hypothetical protein	NA	NA	NA	NA
1265923:1265939	attL	NA	NA	NA	NA
WP_039308832.1\|1266910_1267399_+	ImmA/IrrE family metallo-endopeptidase	A0A1L2BY64	Clostridium_phage	2.6e-44	53.7
WP_039308835.1\|1267503_1268646_+\|integrase	site-specific integrase	A0A0A8WIE1	Clostridium_phage	3.0e-107	53.5
WP_012423605.1\|1268763_1269642_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1P7C7	Bacillus_phage	1.2e-12	24.4
1274130:1274146	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1612733 : 1656942

Clostridium_phage(50.0%)

capsid,plate,transposase,tail,portal,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_035785677.1\|1612733_1613105_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_012424838.1\|1613273_1613468_-	alpha/beta-type small acid-soluble spore protein	G3MAF8	Bacillus_virus	1.9e-06	51.0
WP_035785675.1\|1614233_1614434_-	hypothetical protein	NA	NA	NA	NA
WP_012422880.1\|1614417_1614567_-	hypothetical protein	NA	NA	NA	NA
WP_035785673.1\|1615094_1615412_+	hypothetical protein	NA	NA	NA	NA
WP_080288112.1\|1615544_1615739_+	DUF2892 domain-containing protein	NA	NA	NA	NA
WP_100433893.1\|1615923_1616130_-	DUF3990 domain-containing protein	NA	NA	NA	NA
WP_035786015.1\|1616603_1616816_-	hypothetical protein	NA	NA	NA	NA
WP_035785667.1\|1616919_1617723_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_035785665.1\|1617937_1618456_-	hypothetical protein	NA	NA	NA	NA
WP_035785662.1\|1619207_1619939_-	1,4-beta-N-acetylmuramidase	NA	NA	NA	NA
WP_035785659.1\|1620128_1620371_-	hypothetical protein	NA	NA	NA	NA
WP_100433896.1\|1620761_1621028_-	SEC-C domain-containing protein	NA	NA	NA	NA
WP_035785657.1\|1621620_1622124_-	hypothetical protein	NA	NA	NA	NA
WP_035785654.1\|1622232_1622679_-	SAVED domain-containing protein	NA	NA	NA	NA
WP_035793796.1\|1623310_1623523_-	hypothetical protein	NA	NA	NA	NA
WP_035785649.1\|1624179_1626015_-	hypothetical protein	NA	NA	NA	NA
WP_035785646.1\|1626004_1628014_-	hypothetical protein	NA	NA	NA	NA
WP_035793799.1\|1628030_1629377_-	hypothetical protein	NA	NA	NA	NA
WP_035785642.1\|1629377_1629629_-	TIGR04540 family protein	NA	NA	NA	NA
WP_080288114.1\|1630109_1630544_-\|transposase	transposase	NA	NA	NA	NA
WP_035785640.1\|1630473_1630761_-	hypothetical protein	NA	NA	NA	NA
WP_039309027.1\|1632061_1632346_-	hypothetical protein	NA	NA	NA	NA
WP_039309028.1\|1632505_1633174_+	hypothetical protein	NA	NA	NA	NA
WP_039309030.1\|1633201_1633621_+	hypothetical protein	NA	NA	NA	NA
WP_039309034.1\|1633738_1634815_-	MBL fold metallo-hydrolase	Q332C0	Clostridium_botulinum_C_phage	6.1e-86	58.9
WP_039309038.1\|1634842_1635085_-	hypothetical protein	NA	NA	NA	NA
WP_039309041.1\|1635143_1635950_-	N-acetylmuramoyl-L-alanine amidase family protein	Q332B9	Clostridium_botulinum_C_phage	1.7e-08	45.3
WP_039309044.1\|1636833_1637649_-	glycoside hydrolase family protein	D6QWN8	uncultured_phage	5.0e-16	35.3
WP_039309046.1\|1637707_1637881_-	hypothetical protein	NA	NA	NA	NA
WP_017353246.1\|1637893_1638115_-	UviB-like protein	A0A2H4JAI7	uncultured_Caudovirales_phage	3.6e-09	78.4
WP_039309050.1\|1638191_1639199_-	Ig domain-containing protein	A0A1L2BYA9	Clostridium_phage	4.4e-14	32.1
WP_035786883.1\|1639438_1639618_-	hypothetical protein	NA	NA	NA	NA
WP_039308159.1\|1639636_1639903_-	hypothetical protein	NA	NA	NA	NA
WP_039309053.1\|1641066_1641678_-	YmfQ family protein	A0A0A7RTT8	Clostridium_phage	6.1e-43	42.2
WP_039309056.1\|1641667_1642747_-\|plate	baseplate J/gp47 family protein	A0A0A7RUN3	Clostridium_phage	2.8e-59	41.1
WP_052134084.1\|1642753_1643182_-	DUF2634 domain-containing protein	NA	NA	NA	NA
WP_039310163.1\|1643195_1643528_-	DUF2577 family protein	NA	NA	NA	NA
WP_052134086.1\|1643538_1645530_-	C40 family peptidase	X5JAJ3	Clostridium_phage	5.0e-09	27.5
WP_052134087.1\|1645543_1646170_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_052134088.1\|1646182_1648021_-	hypothetical protein	NA	NA	NA	NA
WP_154563460.1\|1648021_1648189_-	hypothetical protein	NA	NA	NA	NA
WP_052134089.1\|1648200_1648587_-	hypothetical protein	NA	NA	NA	NA
WP_039309062.1\|1648602_1649028_-	hypothetical protein	NA	NA	NA	NA
WP_039309065.1\|1649043_1650126_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0A8WJR2	Clostridium_phage	8.1e-46	35.3
WP_039309070.1\|1650125_1650575_-	hypothetical protein	NA	NA	NA	NA
WP_052134090.1\|1650564_1650972_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_039309073.1\|1650958_1651309_-	hypothetical protein	NA	NA	NA	NA
WP_039309075.1\|1651311_1651599_-	hypothetical protein	NA	NA	NA	NA
WP_039309078.1\|1651613_1652549_-	hypothetical protein	A0A090D825	Clostridium_phage	1.2e-98	56.9
WP_039309081.1\|1652585_1653185_-	DUF4355 domain-containing protein	NA	NA	NA	NA
WP_039309083.1\|1653348_1653651_-	DUF4406 domain-containing protein	NA	NA	NA	NA
WP_039309085.1\|1653824_1654052_-	hypothetical protein	NA	NA	NA	NA
WP_154563463.1\|1654063_1654216_-	hypothetical protein	NA	NA	NA	NA
WP_158380749.1\|1654272_1654656_-	hypothetical protein	NA	NA	NA	NA
WP_039309091.1\|1654664_1655555_-\|capsid	minor capsid protein	NA	NA	NA	NA
WP_039309094.1\|1655544_1656942_-\|portal	phage portal protein	A0A1V0DZW8	Clostridioides_phage	1.2e-57	35.2

DBSCAN-SWA_8

1663449 : 1679631

Clostridium_phage(38.89%)

integrase

attL 1675749:1675765|attR 1686481:1686497

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039309118.1\|1663449_1663974_-	hypothetical protein	A0A0A7RVS1	Clostridium_phage	8.8e-06	23.6
WP_012422880.1\|1663998_1664148_-	hypothetical protein	NA	NA	NA	NA
WP_039310177.1\|1664151_1664415_-	hypothetical protein	A0A0A7RUP4	Clostridium_phage	1.8e-15	54.8
WP_039309120.1\|1664550_1664751_-	hypothetical protein	NA	NA	NA	NA
WP_039310180.1\|1664760_1665174_-	single-stranded DNA-binding protein	A0A290GHL8	Caldibacillus_phage	1.7e-28	50.7
WP_052134091.1\|1665186_1665705_-	HNH endonuclease	E5DV63	Deep-sea_thermophilic_phage	1.9e-24	40.8
WP_039309123.1\|1665697_1666222_-	hypothetical protein	A0A2K9V425	Faecalibacterium_phage	1.9e-29	45.0
WP_052134092.1\|1666218_1666398_-	hypothetical protein	NA	NA	NA	NA
WP_039309126.1\|1666445_1667159_-	hypothetical protein	A0A0A7RWW3	Clostridium_phage	3.1e-70	59.6
WP_039309129.1\|1667228_1667630_-	hypothetical protein	A0A0A7RUF3	Clostridium_phage	6.9e-35	58.6
WP_039309135.1\|1667956_1668142_-	hypothetical protein	NA	NA	NA	NA
WP_154563466.1\|1668176_1668323_-	hypothetical protein	NA	NA	NA	NA
WP_154563469.1\|1668326_1668473_-	hypothetical protein	NA	NA	NA	NA
WP_154563472.1\|1668792_1668957_-	hypothetical protein	NA	NA	NA	NA
WP_039309138.1\|1669059_1669491_-	hypothetical protein	NA	NA	NA	NA
WP_154563475.1\|1669520_1669670_-	hypothetical protein	NA	NA	NA	NA
WP_039309142.1\|1669694_1670564_-	hypothetical protein	A0A2H4JF78	uncultured_Caudovirales_phage	4.6e-52	43.0
WP_039309144.1\|1670574_1671342_-	PD-(D/E)XK nuclease-like domain-containing protein	A0A0A7RUC1	Clostridium_phage	1.5e-59	46.0
WP_052134093.1\|1671328_1672156_-	recombinase RecT	H7BUU1	unidentified_phage	2.3e-56	46.0
WP_080315403.1\|1672168_1672324_-	DUF1540 domain-containing protein	NA	NA	NA	NA
WP_039309147.1\|1672333_1672741_-	hypothetical protein	NA	NA	NA	NA
WP_080315404.1\|1672733_1673336_-	sigma-70 family RNA polymerase sigma factor	M9Q2I8	Clostridium_phage	4.1e-15	34.5
WP_173405967.1\|1673319_1673481_-	hypothetical protein	NA	NA	NA	NA
WP_154563478.1\|1673483_1673636_-	hypothetical protein	NA	NA	NA	NA
WP_039309154.1\|1673739_1673991_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	8.4e-15	51.8
WP_017354102.1\|1674042_1674312_+	hypothetical protein	A0A2H4JEH2	uncultured_Caudovirales_phage	3.9e-10	38.8
WP_039309157.1\|1674308_1674725_-	hypothetical protein	NA	NA	NA	NA
WP_039309159.1\|1674756_1675461_-	phage antirepressor KilAC domain-containing protein	A0A2D1GQ65	Lysinibacillus_phage	2.5e-40	42.7
WP_173405968.1\|1675597_1675759_-	hypothetical protein	NA	NA	NA	NA
1675749:1675765	attL	NA	NA	NA	NA
WP_039309162.1\|1675873_1676086_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_039309165.1\|1676091_1676889_-	ORF6N domain-containing protein	X5JAW6	Clostridium_phage	7.5e-57	44.1
WP_039309167.1\|1676911_1677127_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_039309170.1\|1677294_1677891_+	helix-turn-helix transcriptional regulator	B6SBW8	Clostridium_virus	3.4e-14	30.4
WP_039309173.1\|1677911_1678394_+	ImmA/IrrE family metallo-endopeptidase	A0A141VTQ3	Staphylococcus_phage	2.5e-23	41.1
WP_039310192.1\|1678440_1679631_+\|integrase	site-specific integrase	A0A2I7SCV1	Paenibacillus_phage	5.2e-70	38.9
1686481:1686497	attR	NA	NA	NA	NA

DBSCAN-SWA_9

2455135 : 2462856

Clostridium_phage(33.33%)

integrase

attL 2455524:2455539|attR 2459996:2460011

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039309450.1\|2455135_2455954_-	ATP-binding protein	H7BV58	unidentified_phage	1.4e-18	35.1
2455524:2455539	attL	NA	NA	NA	NA
WP_100433897.1\|2455913_2456237_-	hypothetical protein	A0A218KCJ2	Bacillus_phage	1.2e-10	40.8
WP_039309456.1\|2456686_2456980_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_039309457.1\|2457055_2457259_-	helix-turn-helix transcriptional regulator	I2E8Y1	Clostridium_phage	1.7e-05	40.8
WP_052134096.1\|2457403_2457856_+	helix-turn-helix transcriptional regulator	I3VYY8	Thermoanaerobacterium_phage	6.2e-08	37.9
WP_039309459.1\|2457856_2459005_+\|integrase	site-specific integrase	A0A0A8WIF9	Clostridium_phage	6.3e-41	31.0
WP_035783423.1\|2459805_2460462_-	hypothetical protein	NA	NA	NA	NA
2459996:2460011	attR	NA	NA	NA	NA
WP_035783425.1\|2460483_2462856_-	cation-translocating P-type ATPase	M1I547	Acanthocystis_turfacea_Chlorella_virus	8.8e-37	24.9

DBSCAN-SWA_10

2990419 : 3048136

Bacillus_phage(26.67%)

tRNA,terminase,integrase,coat

attL 3006685:3006705|attR 3053030:3053050

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003371286.1\|2990419_2990713_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_012425007.1\|2990731_2992189_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_035786282.1\|2992209_2993640_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_035786284.1\|2993702_2994002_-	hypothetical protein	NA	NA	NA	NA
WP_039309621.1\|2994262_2995744_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_039309622.1\|2995816_2997475_-	hypothetical protein	NA	NA	NA	NA
WP_003373848.1\|2997721_2998471_+	ribonuclease PH	NA	NA	NA	NA
WP_035786287.1\|2998474_2999092_+	XTP/dITP diphosphatase	Q66YC8	Euphorbia_ringspot_virus	4.1e-10	33.3
WP_035786288.1\|2999103_2999583_+	metallophosphoesterase	NA	NA	NA	NA
WP_039309623.1\|3001927_3003079_-\|integrase	site-specific integrase	A0A1B0T6A8	Bacillus_phage	1.8e-27	31.8
WP_052134097.1\|3003079_3003421_-	helix-turn-helix transcriptional regulator	A0A0A7RTK4	Clostridium_phage	1.4e-07	45.0
WP_039309624.1\|3003581_3003764_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_039309625.1\|3003797_3003980_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_158380751.1\|3004161_3006300_+	hypothetical protein	A0A1U9ZA69	Proteus_phage	2.0e-24	27.7
WP_039309629.1\|3006313_3006583_+	hypothetical protein	NA	NA	NA	NA
WP_039309631.1\|3006598_3007054_+	hypothetical protein	A0A2H4J015	uncultured_Caudovirales_phage	3.9e-10	34.9
3006685:3006705	attL	NA	NA	NA	NA
WP_039309633.1\|3007439_3007685_+	hypothetical protein	NA	NA	NA	NA
WP_039309635.1\|3007976_3008465_+\|terminase	terminase small subunit	U5PZD3	Bacillus_phage	1.8e-29	40.3
WP_039309637.1\|3008606_3009176_+\|integrase	tyrosine-type recombinase/integrase	A0A1B0WMK0	Flavobacterium_phage	1.7e-07	30.2
WP_039309639.1\|3009308_3009485_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_039309641.1\|3010070_3010682_+	hypothetical protein	NA	NA	NA	NA
WP_039309642.1\|3010786_3011422_+	recombinase family protein	A0A0A8WJD4	Clostridium_phage	3.5e-17	30.7
WP_039309643.1\|3011544_3011880_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_039309644.1\|3011904_3012447_+	hypothetical protein	NA	NA	NA	NA
WP_039309645.1\|3012681_3013998_-	hypothetical protein	NA	NA	NA	NA
WP_039309647.1\|3014265_3015639_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_144313598.1\|3015704_3016772_+	type II toxin-antitoxin system RnlA family toxin	NA	NA	NA	NA
WP_039309651.1\|3016802_3017192_+	hypothetical protein	NA	NA	NA	NA
WP_035783448.1\|3024361_3025309_+	polysaccharide deacetylase	NA	NA	NA	NA
WP_035783450.1\|3025410_3026100_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.7e-36	36.7
WP_035783451.1\|3026104_3027502_+	HAMP domain-containing protein	W8CYF6	Bacillus_phage	2.7e-33	32.4
WP_035783453.1\|3027498_3028953_+	hypothetical protein	NA	NA	NA	NA
WP_035783454.1\|3029243_3030626_+	TldD/PmbA family protein	NA	NA	NA	NA
WP_035783456.1\|3030629_3031973_+	TldD/PmbA family protein	NA	NA	NA	NA
WP_035793403.1\|3032326_3034177_-	LTA synthase family protein	W6LM83	Streptococcus_phage	1.9e-39	27.2
WP_035783459.1\|3034359_3034938_+	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA
WP_035793401.1\|3034968_3035925_+	FAD-dependent oxidoreductase	G3MA85	Bacillus_virus	9.1e-09	22.8
WP_035783462.1\|3035921_3036485_-	lipase	NA	NA	NA	NA
WP_035783463.1\|3036500_3037118_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA
WP_035784478.1\|3037434_3038454_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	6.8e-63	39.8
WP_035783465.1\|3038456_3039461_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_035783466.1\|3039624_3040812_+	trypsin-like peptidase domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	5.6e-16	27.5
WP_035783468.1\|3040975_3041395_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_035783470.1\|3041722_3042805_+	ethanolamine utilization protein EutH	NA	NA	NA	NA
WP_035783471.1\|3042830_3043967_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_035783473.1\|3043969_3045091_-	glycosyltransferase family 4 protein	B6EFC4	Stygiolobus_rod-shaped_virus	8.4e-06	33.8
WP_035783475.1\|3045237_3046254_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_035783477.1\|3046273_3046999_+\|coat	spore coat protein	NA	NA	NA	NA
WP_035783479.1\|3047092_3048136_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
3053030:3053050	attR	NA	NA	NA	NA

DBSCAN-SWA_11

3500882 : 3514807

Clostridium_phage(92.31%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_035784041.1\|3500882_3501344_-	ImmA/IrrE family metallo-endopeptidase	A0A0A7RTX7	Clostridium_phage	1.2e-35	50.7
WP_035791008.1\|3501361_3501727_-	helix-turn-helix transcriptional regulator	A0A2I7SCV6	Paenibacillus_phage	1.8e-05	49.2
WP_035784044.1\|3501981_3502491_+	helix-turn-helix domain-containing protein	I2E8Y5	Clostridium_phage	3.1e-32	45.3
WP_039309871.1\|3503071_3503488_+	hypothetical protein	NA	NA	NA	NA
WP_012451514.1\|3503477_3503633_+	hypothetical protein	NA	NA	NA	NA
WP_035784047.1\|3503633_3504944_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0A7S087	Clostridium_phage	1.4e-129	54.6
WP_012450094.1\|3504962_3505430_+\|tail	phage tail tube protein	A0A0A7RVP1	Clostridium_phage	5.2e-58	72.4
WP_035784049.1\|3505727_3506141_+	phage XkdN-like protein	A0A0A7RTN3	Clostridium_phage	4.4e-45	63.0
WP_035784050.1\|3506336_3508286_+\|tail	tail length tape measure protein	A0A0A7S0K9	Clostridium_phage	2.1e-52	30.4
WP_035784051.1\|3508285_3508948_+	LysM peptidoglycan-binding domain-containing protein	A0A0A7RW06	Clostridium_phage	1.9e-69	56.3
WP_035784052.1\|3508959_3509931_+	hypothetical protein	A0A0A7RTZ4	Clostridium_phage	9.0e-105	55.6
WP_080288048.1\|3509934_3510264_+	DUF2577 domain-containing protein	A0A0A7RTJ2	Clostridium_phage	1.1e-25	53.8
WP_035784053.1\|3510256_3510664_+	DUF2634 domain-containing protein	A0A0A7RTH1	Clostridium_phage	4.7e-39	64.8
WP_035791010.1\|3510666_3511725_+\|plate	baseplate J/gp47 family protein	A0A0A7S0L4	Clostridium_phage	3.2e-95	53.1
WP_035784056.1\|3514192_3514807_+	YmfQ family protein	A0A0A7RTU9	Clostridium_phage	6.6e-61	58.0

DBSCAN-SWA_12

3674959 : 3681212

Cyanophage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_035791046.1\|3674959_3675439_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.1e-26	44.9
WP_035791047.1\|3675438_3676146_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SLB8	Cyanophage	5.6e-48	45.2
WP_012424148.1\|3676517_3677945_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.8e-54	32.3
WP_035791049.1\|3677954_3678956_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SE90	Cyanophage	8.2e-69	46.9
WP_035791050.1\|3678943_3679558_+	phosphoribosylglycinamide formyltransferase	R9S626	Prochlorococcus_phage	1.7e-21	36.1
WP_035784256.1\|3679706_3681212_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	S4VT61	Pandoravirus	1.0e-46	37.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP006904

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 17300

Acinetobacter_phage(36.36%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040107827.1\|85_445_-	hypothetical protein	A9YX11	Burkholderia_phage	1.6e-11	38.1
WP_052134104.1\|434_1040_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	2.3e-34	42.5
WP_040107828.1\|1050_3015_-	glucosaminidase domain-containing protein	A0A0P0HSL6	Acinetobacter_phage	2.6e-26	30.7
WP_040107829.1\|3007_3334_-	hypothetical protein	NA	NA	NA	NA
WP_040107830.1\|3346_3877_-	hypothetical protein	L7TN02	Rhizobium_phage	6.1e-15	29.9
WP_040107831.1\|3879_5649_-	YtxH domain-containing protein	NA	NA	NA	NA
WP_040107870.1\|5813_6284_-	hypothetical protein	NA	NA	NA	NA
WP_040107832.1\|6304_6733_-	DUF3277 family protein	NA	NA	NA	NA
WP_040107833.1\|6745_7876_-	DUF3383 family protein	A0A2H4J8G4	uncultured_Caudovirales_phage	1.4e-53	37.1
WP_040107836.1\|8441_8804_-	hypothetical protein	NA	NA	NA	NA
WP_040107837.1\|9388_9868_-	DUF4054 domain-containing protein	NA	NA	NA	NA
WP_040107838.1\|9878_10106_-	hypothetical protein	NA	NA	NA	NA
WP_040107839.1\|10118_11132_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	2.2e-37	34.6
WP_040107840.1\|11144_11675_-	hypothetical protein	A0A0P0I8F3	Acinetobacter_phage	2.9e-09	31.9
WP_040107841.1\|11676_12924_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	2.4e-25	31.2
WP_040107842.1\|12954_13143_-	hypothetical protein	NA	NA	NA	NA
WP_040107843.1\|13186_13666_-	hypothetical protein	NA	NA	NA	NA
WP_040107844.1\|13681_14530_-	hypothetical protein	A0A0P0IKX5	Acinetobacter_phage	3.8e-27	35.4
WP_052134106.1\|14531_15962_-	DUF1073 domain-containing protein	A0A0P0I486	Acinetobacter_phage	1.1e-74	35.9
WP_052134107.1\|15983_17300_-\|terminase	PBSX family phage terminase large subunit	A0A2H4J4X1	uncultured_Caudovirales_phage	1.9e-137	56.9

DBSCAN-SWA_2

25057 : 28924

Caldibacillus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040107856.1\|25057_25477_-	single-stranded DNA-binding protein	A0A290GHL8	Caldibacillus_phage	1.5e-27	49.3
WP_040107857.1\|26366_26666_-	hypothetical protein	NA	NA	NA	NA
WP_173405981.1\|26668_26815_-	hypothetical protein	NA	NA	NA	NA
WP_080315418.1\|26815_26950_-	aspartyl-phosphate phosphatase Spo0E family protein	NA	NA	NA	NA
WP_154563491.1\|26984_27131_-	hypothetical protein	NA	NA	NA	NA
WP_040107858.1\|27291_27636_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_040107859.1\|27908_28118_+	helix-turn-helix transcriptional regulator	I3VYZ1	Thermoanaerobacterium_phage	3.8e-05	42.0
WP_040107860.1\|28219_28513_+	helix-turn-helix transcriptional regulator	A0A0A7RUJ5	Clostridium_phage	1.3e-22	62.6
WP_080315420.1\|28567_28924_-	hypothetical protein	A0A2D1Q768	Geobacillus_phage	6.6e-05	31.4

DBSCAN-SWA_3

33303 : 39026

Enterococcus_phage(20.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040107865.1\|33303_34056_-	ParA family protein	F0PIG8	Enterococcus_phage	9.6e-14	26.8
WP_154563497.1\|34136_34286_-	hypothetical protein	NA	NA	NA	NA
WP_052134109.1\|34420_35116_-	hypothetical protein	NA	NA	NA	NA
WP_040107866.1\|35349_36132_-	glycoside hydrolase family protein	A0A142EZW8	Stenotrophomonas_phage	6.9e-15	36.1
WP_040107867.1\|36168_36591_-\|holin	phage holin family protein	A0A0A7RTU1	Clostridium_phage	1.4e-41	60.4
WP_035791244.1\|36690_36870_-	hypothetical protein	NA	NA	NA	NA
WP_052134110.1\|37168_38365_-	hypothetical protein	A0A0C5AEQ0	Bacteriophage	1.1e-19	38.6
WP_052134111.1\|38351_39026_-	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	2.1e-20	35.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP006903

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP006904

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection