Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP007456 Bifidobacterium kashiwanohense PV20-2 chromosome, complete genome 4 crisprs cas3,csa3,DEDDh,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4 0 12 2 0

Results visualization

1. NZ_CP007456
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007456_1 69288-69413 Orphan NA
2 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007456_2 90179-90303 Orphan NA
2 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007456_3 1004080-1004155 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007456_4 1714303-1717226 TypeI NA
43 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP007456_4 4.16|1715347|35|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT 1715347-1715381 35 MN693514 Marine virus AFVG_25M225, complete genome 12471-12505 5 0.857
NZ_CP007456_1 1.1|69312|27|NZ_CP007456|CRISPRCasFinder 69312-69338 27 NZ_CP032685 Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence 1257817-1257843 6 0.778
NZ_CP007456_1 1.1|69312|27|NZ_CP007456|CRISPRCasFinder 69312-69338 27 NZ_CP032690 Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence 1260295-1260321 6 0.778
NZ_CP007456_4 4.7|1714738|32|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT 1714738-1714769 32 NZ_CP031836 Lactobacillus amylolyticus strain L5 plasmid p1, complete sequence 23941-23972 7 0.781
NZ_CP007456_4 4.7|1714738|32|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT 1714738-1714769 32 NZ_CP020458 Lactobacillus amylolyticus strain L6 plasmid pL6-1, complete sequence 23941-23972 7 0.781
NZ_CP007456_4 4.8|1714803|32|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT 1714803-1714834 32 NZ_CP031836 Lactobacillus amylolyticus strain L5 plasmid p1, complete sequence 23941-23972 7 0.781
NZ_CP007456_4 4.8|1714803|32|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT 1714803-1714834 32 NZ_CP020458 Lactobacillus amylolyticus strain L6 plasmid pL6-1, complete sequence 23941-23972 7 0.781
NZ_CP007456_4 4.21|1715682|33|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT 1715682-1715714 33 NZ_CP035233 Bacillus glycinifermentans strain SRCM103574 plasmid unnamed1, complete sequence 36291-36323 7 0.788
NZ_CP007456_4 4.29|1716222|35|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT 1716222-1716256 35 NC_020276 Mycobacterium intracellulare subsp. yongonense 05-1390 plasmid pMyong2, complete sequence 4221-4255 7 0.8
NZ_CP007456_4 4.29|1716222|35|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT 1716222-1716256 35 NC_010510 Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence 155371-155405 8 0.771
NZ_CP007456_4 4.33|1716490|34|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT 1716490-1716523 34 GQ919031 Streptomyces phage ZL12, complete genome 35682-35715 8 0.765
NZ_CP007456_4 4.41|1717024|33|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT 1717024-1717056 33 NZ_CP010420 Azotobacter chroococcum NCIMB 8003 plasmid pAcX50e, complete sequence 23951-23983 8 0.758
NZ_CP007456_4 4.22|1715748|35|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT 1715748-1715782 35 NC_008384 Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence 443108-443142 9 0.743
NZ_CP007456_4 4.22|1715748|35|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT 1715748-1715782 35 NZ_CP054023 Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence 38421-38455 9 0.743
NZ_CP007456_4 4.33|1716490|34|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT 1716490-1716523 34 NZ_AP014707 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_3p, complete sequence 13867-13900 9 0.735
NZ_CP007456_4 4.39|1716891|33|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT 1716891-1716923 33 NC_013857 Azospirillum sp. B510 plasmid pAB510c, complete sequence 313167-313199 9 0.727
NZ_CP007456_4 4.41|1717024|33|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT 1717024-1717056 33 NZ_CP024895 Amycolatopsis sp. AA4 plasmid unnamed1, complete sequence 280774-280806 9 0.727
NZ_CP007456_4 4.18|1715485|33|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT 1715485-1715517 33 NZ_CP010857 Marinovum algicola DG 898 plasmid pMaD2, complete sequence 171364-171396 10 0.697
NZ_CP007456_4 4.19|1715551|32|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT 1715551-1715582 32 MN693966 Marine virus AFVG_250M1180, complete genome 4847-4878 10 0.688

1. spacer 4.16|1715347|35|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT matches to MN693514 (Marine virus AFVG_25M225, complete genome) position: , mismatch: 5, identity: 0.857

acaccaacaacaacacaaacaccac--acaacacaac	CRISPR spacer
acaccaacaacaacacaaatacaaccaactacaca--	Protospacer
*******************.** **  ** *****  

2. spacer 1.1|69312|27|NZ_CP007456|CRISPRCasFinder matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 6, identity: 0.778

aacaaggtcgcgttgatggtgcgtgaa	CRISPR spacer
agcaaggtcgcgtcgatggtgcggtgc	Protospacer
*.***********.*********  . 

3. spacer 1.1|69312|27|NZ_CP007456|CRISPRCasFinder matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 6, identity: 0.778

aacaaggtcgcgttgatggtgcgtgaa	CRISPR spacer
agcaaggtcgcgtcgatggtgcggtgc	Protospacer
*.***********.*********  . 

4. spacer 4.7|1714738|32|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031836 (Lactobacillus amylolyticus strain L5 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

-acggcaagcatgaaccacgtcgccatcatcct	CRISPR spacer
gactg-attcatcaaccacgtcgtcatcatcca	Protospacer
 ** * *  *** **********.******** 

5. spacer 4.7|1714738|32|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020458 (Lactobacillus amylolyticus strain L6 plasmid pL6-1, complete sequence) position: , mismatch: 7, identity: 0.781

-acggcaagcatgaaccacgtcgccatcatcct	CRISPR spacer
gactg-attcatcaaccacgtcgtcatcatcca	Protospacer
 ** * *  *** **********.******** 

6. spacer 4.8|1714803|32|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031836 (Lactobacillus amylolyticus strain L5 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

-acggcaagcatgaaccacgtcgccatcatcct	CRISPR spacer
gactg-attcatcaaccacgtcgtcatcatcca	Protospacer
 ** * *  *** **********.******** 

7. spacer 4.8|1714803|32|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020458 (Lactobacillus amylolyticus strain L6 plasmid pL6-1, complete sequence) position: , mismatch: 7, identity: 0.781

-acggcaagcatgaaccacgtcgccatcatcct	CRISPR spacer
gactg-attcatcaaccacgtcgtcatcatcca	Protospacer
 ** * *  *** **********.******** 

8. spacer 4.21|1715682|33|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035233 (Bacillus glycinifermentans strain SRCM103574 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

caccccgtttctggcggacaaaatcatcaccac	CRISPR spacer
aagtacatttcttgcggacaaaatcatcacctc	Protospacer
 * . *.***** ****************** *

9. spacer 4.29|1716222|35|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT matches to NC_020276 (Mycobacterium intracellulare subsp. yongonense 05-1390 plasmid pMyong2, complete sequence) position: , mismatch: 7, identity: 0.8

gcgaagaccatcgccgcgaacgcgatcacagcgga-	CRISPR spacer
tagacgaccatcgccgcgaacgccatca-agcagtc	Protospacer
  ** ****************** **** ***.*  

10. spacer 4.29|1716222|35|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 8, identity: 0.771

gcgaagaccatcgccgcgaacgcgatcacagcgga	CRISPR spacer
gcgaagaccatcgccgagaacacgatgatcccgac	Protospacer
**************** ****.**** *.  **. 

11. spacer 4.33|1716490|34|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT matches to GQ919031 (Streptomyces phage ZL12, complete genome) position: , mismatch: 8, identity: 0.765

-catgcagcatgatctccgcgaacgcgatcaccgc	CRISPR spacer
tcgcg-gggaagatcgccgcgaacgcggtcaccgc	Protospacer
 *..* .* * **** ***********.*******

12. spacer 4.41|1717024|33|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010420 (Azotobacter chroococcum NCIMB 8003 plasmid pAcX50e, complete sequence) position: , mismatch: 8, identity: 0.758

ggtcgcggcctgcgagtccgccgtccg---ccaagt	CRISPR spacer
gacggcggcctgcgaggccgccatccgcaccca---	Protospacer
*.. ************ *****.****   ***   

13. spacer 4.22|1715748|35|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT matches to NC_008384 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence) position: , mismatch: 9, identity: 0.743

cggctgtcccatgtgcctgtggcgacgtcggcggg	CRISPR spacer
ttgatcacccatgtgcctgtggagacgacggcgaa	Protospacer
. * *  *************** **** *****..

14. spacer 4.22|1715748|35|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054023 (Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence) position: , mismatch: 9, identity: 0.743

cggctgtcccatgtgcctgtggcgacgtcggcggg	CRISPR spacer
ttgataacccatgtgcctgtggagacgacggcgaa	Protospacer
. * *. *************** **** *****..

15. spacer 4.33|1716490|34|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014707 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_3p, complete sequence) position: , mismatch: 9, identity: 0.735

catgcagcatgatctccgcgaacgcgatcaccgc	CRISPR spacer
atggtggcatgatcgccgcgaacacgatcaaggc	Protospacer
   *..******** ********.******  **

16. spacer 4.39|1716891|33|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 9, identity: 0.727

cgggttcggcgtgatcgaacccctatgcttgta	CRISPR spacer
cgggctcggcgtgatcgaaccgctatcgaccag	Protospacer
****.**************** ****   .  .

17. spacer 4.41|1717024|33|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024895 (Amycolatopsis sp. AA4 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

ggtcgcggcctgcgagtccgccgtccgccaagt	CRISPR spacer
ggtcgcggccggcgagcccgccgtaggtcggaa	Protospacer
********** *****.*******  *.*... 

18. spacer 4.18|1715485|33|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010857 (Marinovum algicola DG 898 plasmid pMaD2, complete sequence) position: , mismatch: 10, identity: 0.697

tcgctcacgacggaggccgtcgcatcctgcatg	CRISPR spacer
ggatgctcgacgaaggccgccgcatcctgcact	Protospacer
  .. * *****.******.***********. 

19. spacer 4.19|1715551|32|NZ_CP007456|PILER-CR,CRISPRCasFinder,CRT matches to MN693966 (Marine virus AFVG_250M1180, complete genome) position: , mismatch: 10, identity: 0.688

ttttcggaaaaattattcgccgttgtcttata	CRISPR spacer
atatcggaaaaattattttccgttgtgcccct	Protospacer
 * **************. ******* .. . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1093642 : 1100240 12 Gordonia_phage(33.33%) NA NA
DBSCAN-SWA_2 2088197 : 2151123 37 Streptococcus_phage(27.27%) transposase,integrase attL 2117224:2117240|attR 2122708:2122724
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage