CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009105	Escherichia coli strain RM9387 plasmid pO104_H7, complete sequence	0 crisprs	NA	0	0	1	0
NZ_CP009104	Escherichia coli strain RM9387 chromosome, complete genome	3 crisprs	WYL,DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	0	12	10	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

31739 : 82559

Stx2-converting_phage(39.13%)

integrase,bacteriocin,transposase

attL 31655:31714|attR 70527:73058

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
31655:31714	attL	NA	NA	NA	NA
WP_000422741.1\|31739_32165_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_000624722.1\|32161_32512_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_039264366.1\|32542_34156_+\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.8e-182	63.4
WP_052214797.1\|34232_34673_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	5.6e-46	61.6
WP_085947598.1\|34685_35848_-\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.0e-51	40.6
WP_040116944.1\|36257_37640_+	autoagglutinating adhesin Saa	A0A2C9CZB7	Yersinia_phage	1.8e-05	34.9
WP_040116947.1\|40301_42389_+	bifunctional siderophore receptor/adhesin Iha	A0A0P0I887	Acinetobacter_phage	6.8e-09	32.2
WP_001212725.1\|42649_43072_-	Exc2 family lipoprotein	NA	NA	NA	NA
WP_001373081.1\|44122_44548_-	subtilase AB5 cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	2.1e-26	45.2
WP_000912970.1\|44564_45608_-	subtilase AB5 cytotoxin subunit A	A0A1B0T6A2	Bacillus_phage	3.5e-06	28.3
WP_000435654.1\|47001_47427_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	9.5e-35	74.2
WP_071531845.1\|47731_47917_-	hypothetical protein	NA	NA	NA	NA
WP_169124752.1\|51344_51530_-	hypothetical protein	NA	NA	NA	NA
WP_180355324.1\|51522_51675_-	hypothetical protein	NA	NA	NA	NA
WP_000421260.1\|53818_54109_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001178089.1\|54108_54393_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_001027503.1\|55016_55208_-	hypothetical protein	NA	NA	NA	NA
WP_159454916.1\|55259_55454_-	hypothetical protein	NA	NA	NA	NA
WP_040116951.1\|56535_56913_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	6.1e-25	47.2
WP_040116952.1\|58187_58604_-	plasmid partitioning/stability family protein	NA	NA	NA	NA
WP_000688510.1\|58596_59577_-	plasmid segregation protein ParM	A0A0A7NPX4	Enterobacteria_phage	1.7e-79	51.4
WP_000030199.1\|59983_60292_-	hypothetical protein	NA	NA	NA	NA
WP_001144036.1\|60378_61023_-	ParA family protein	NA	NA	NA	NA
WP_040116953.1\|61204_62011_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	4.1e-55	95.6
WP_001159871.1\|62011_62317_-	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_038355956.1\|62318_62537_-	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_000343085.1\|63131_63389_+	hypothetical protein	NA	NA	NA	NA
WP_000194574.1\|63388_63979_+	hypothetical protein	NA	NA	NA	NA
WP_000762580.1\|64460_64808_+	hypothetical protein	NA	NA	NA	NA
WP_001283354.1\|64825_66706_-	colicin	NA	NA	NA	NA
WP_000448923.1\|66984_67650_-	hypothetical protein	NA	NA	NA	NA
WP_024199761.1\|68378_70352_+	TonB-dependent receptor	NA	NA	NA	NA
WP_000422741.1\|70611_71037_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_000624722.1\|71033_71384_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_039264366.1\|71414_73028_+\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.8e-182	63.4
WP_039264366.1\|74030_75644_-\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.8e-182	63.4
70527:73058	attR	NA	NA	NA	NA
WP_000624722.1\|75674_76025_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000422741.1\|76021_76447_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_040116954.1\|76681_77332_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	8.0e-17	43.6
WP_000624622.1\|77331_77679_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_040116955.1\|77698_79270_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.9e-168	58.5
WP_040116956.1\|79487_79724_+	colicin V immunity protein	NA	NA	NA	NA
WP_032144652.1\|79940_80258_+\|bacteriocin	colicin V family bacteriocin	NA	NA	NA	NA
WP_123129447.1\|80444_82559_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	2.1e-34	26.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009104

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009104_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009104_1

1734543-1734691

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGTACAGGCAGCTTAGAAAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP009104_1

>merge|NZ_CP009104|1|1734543-1734691|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAATCGACGGGGTGCGGTAAAACCTTTGCGAACGCGTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGC

>NZ_CP009104|1|1|1734543-1734691|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAAT	CGACGGGGTGCGGTAAAACCTTTGCGAACGC
GTTCACTGCCGTACAGGCAGCTTAGAAAT	TCACAGGTAACATACTCCACCCGCCCACCAT
GTTCACTGCCGTACAGACAGATAAAATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009104.1\|WP_000410785.1\|1731156_1731381_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP009104.1\|WP_001202188.1\|1736323_1738045_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP009104.1\|WP_000188193.1\|1729137_1731084_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP009104.1\|WP_039264390.1\|1738045_1739812_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP009104.1\|WP_000599806.1\|1725263_1726922_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP009104.1\|WP_001040187.1\|1735074_1735293_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP009104.1\|WP_001298299.1\|1724142_1724838_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP009104.1\|WP_000228473.1\|1741444_1741939_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP009104.1\|WP_000886683.1\|1748429_1749722_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP009104.1\|WP_001355621.1\|1726918_1727875_-\|VirK/YbjX-family-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP009104.1\|WP_001295343.1\|1746373_1746985_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP009104.1\|WP_000458817.1\|1720952_1722605_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP009104.1\|WP_000077018.1\|1742073_1746219_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP009104.1\|WP_001241678.1\|1735577_1736282_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP009104.1\|WP_000746460.1\|1728025_1729141_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP009104.1\|WP_000537418.1\|1739934_1740900_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP009104.1\|WP_000520781.1\|1731703_1732024_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP009104.1\|WP_000067755.1\|1746995_1748339_+\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355
NZ_CP009104.1\|WP_000934045.1\|1732054_1734331_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP009104.1\|WP_000491142.1\|1722748_1723648_-\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287

Protein	Function_ID	Function_description	E-value
NZ_CP009104.1\|WP_000410785.1\|1731156_1731381_-\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP009104.1\|WP_001202188.1\|1736323_1738045_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP009104.1\|WP_000188193.1\|1729137_1731084_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP009104.1\|WP_039264390.1\|1738045_1739812_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP009104.1\|WP_000599806.1\|1725263_1726922_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP009104.1\|WP_001040187.1\|1735074_1735293_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP009104.1\|WP_001298299.1\|1724142_1724838_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	2.04944e-144
NZ_CP009104.1\|WP_000228473.1\|1741444_1741939_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP009104.1\|WP_000886683.1\|1748429_1749722_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP009104.1\|WP_001355621.1\|1726918_1727875_-\|VirK/YbjX-family-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	1.27645e-131
NZ_CP009104.1\|WP_001295343.1\|1746373_1746985_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NZ_CP009104.1\|WP_000458817.1\|1720952_1722605_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP009104.1\|WP_000077018.1\|1742073_1746219_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP009104.1\|WP_001241678.1\|1735577_1736282_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	3.45002e-139
NZ_CP009104.1\|WP_000746460.1\|1728025_1729141_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP009104.1\|WP_000537418.1\|1739934_1740900_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP009104.1\|WP_000520781.1\|1731703_1732024_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP009104.1\|WP_000067755.1\|1746995_1748339_+\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP009104.1\|WP_000934045.1\|1732054_1734331_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP009104.1\|WP_000491142.1\|1722748_1723648_-\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	8.74036e-118

>NZ_CP009104.1|WP_000934045.1|1732054_1734331_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKTLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP009104.1|WP_000520781.1|1731703_1732024_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP009104.1|WP_000410785.1|1731156_1731381_-|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP009104.1|WP_000188193.1|1729137_1731084_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGITLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRAQGLLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNVAGGTEPVVNTVSGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTATGILFGWLPARNAARLDPVDALARE
>NZ_CP009104.1|WP_000746460.1|1728025_1729141_+|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP009104.1|WP_001355621.1|1726918_1727875_-|VirK/YbjX-family-protein
MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG
>NZ_CP009104.1|WP_000599806.1|1725263_1726922_+|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP009104.1|WP_001298299.1|1724142_1724838_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRD
>NZ_CP009104.1|WP_000491142.1|1722748_1723648_-|L-lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP009104.1|WP_000458817.1|1720952_1722605_-|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA
>NZ_CP009104.1|WP_001040187.1|1735074_1735293_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP009104.1|WP_001241678.1|1735577_1736282_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNNFWVPRCLFSPQE
>NZ_CP009104.1|WP_001202188.1|1736323_1738045_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAESLRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP009104.1|WP_039264390.1|1738045_1739812_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLGLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGRIIEQGRYAELSVAGGPFATLLAHRQEEI
>NZ_CP009104.1|WP_000537418.1|1739934_1740900_-|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP009104.1|WP_000228473.1|1741444_1741939_+|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP009104.1|WP_000077018.1|1742073_1746219_+|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEIIYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPSQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAAEQPVQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQSVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVPPQQQYQQPQQPVAPQQQYQQPQQPVPPQQQYQQPQQPVAPQPQYQQPQQQVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQQQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP009104.1|WP_001295343.1|1746373_1746985_+|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP009104.1|WP_000067755.1|1746995_1748339_+|replication-associated-recombination-protein-RarA
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP009104.1|WP_000886683.1|1748429_1749722_+|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP009104_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009104_2

3791324-3791718

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT

6 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP009104_2

>merge|NZ_CP009104|2|3791324-3791718|PILER-CR,CRISPRCasFinder,CRT
CGGTTTATCCCCGCTGACGCGGGGAACACCAGATTATCTTCTTTTTCAATCCAGCCACCGACGGTTTATCCCCGCTGGCGCGGGGAACACGATTGTTTTCGCGCCCGTGTCATTGTCGAGGTCGGTTTATCCCCGCTGGCGCGGGGAACACCTTACCACCCAGACACTGATACTCCACATAAACGGTTTATCCCCGCTGGCGCGGGGAACACTCACGCGGAGTGAGACGGCGTACGAGCATTGCCGGTTTATCCCCGCTGGCGCGGGGAACACGCAAATTACCGCCGGGCTAACGTTTGATCTCACGGTTTATCCCCGCTGGCGCGGGGAACACATGTCGAGCGCGTTGACAGCTATATTCGCCGTCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP009104|2|1|3791324-3791718|PILER-CR
CGGTTTATCCCCGCTGACGCGGGGAACAC	CAGATTATCTTCTTTTTCAATCCAGCCACCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATTGTTTTCGCGCCCGTGTCATTGTCGAGGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTTACCACCCAGACACTGATACTCCACATAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCACGCGGAGTGAGACGGCGTACGAGCATTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAAATTACCGCCGGGCTAACGTTTGATCTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGTCGAGCGCGTTGACAGCTATATTCGCCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP009104|2|2|3791324-3791718|CRISPRCasFinder
CGGTTTATCCCCGCTGACGCGGGGAACAC	CAGATTATCTTCTTTTTCAATCCAGCCACCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATTGTTTTCGCGCCCGTGTCATTGTCGAGGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTTACCACCCAGACACTGATACTCCACATAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCACGCGGAGTGAGACGGCGTACGAGCATTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAAATTACCGCCGGGCTAACGTTTGATCTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGTCGAGCGCGTTGACAGCTATATTCGCCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP009104|2|1|3791324-3791718|CRT
CGGTTTATCCCCGCTGACGCGGGGAACAC	CAGATTATCTTCTTTTTCAATCCAGCCACCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATTGTTTTCGCGCCCGTGTCATTGTCGAGGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTTACCACCCAGACACTGATACTCCACATAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCACGCGGAGTGAGACGGCGTACGAGCATTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAAATTACCGCCGGGCTAACGTTTGATCTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGTCGAGCGCGTTGACAGCTATATTCGCCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009104.1\|WP_000246138.1\|3785402_3786113_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP009104.1\|WP_001246104.1\|3786636_3786960_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP009104.1\|WP_000144861.1\|3792104_3793028_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP009104.1\|WP_000517476.1\|3786131_3786443_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP009104.1\|WP_000372108.1\|3789043_3789952_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP009104.1\|WP_000281442.1\|3793024_3793675_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP009104.1\|WP_001090345.1\|3787614_3789042_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP009104.1\|WP_001173673.1\|3787009_3787615_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP009104.1\|WP_000568943.1\|3783877_3784927_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP009104.1\|WP_000063176.1\|3791814_3792108_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP009104.1\|WP_000490402.1\|3790203_3791241_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP009104.1\|WP_001219242.1\|3784923_3785403_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP009104.1\|WP_001084075.1\|3796013_3797576_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP009104.1\|WP_000085068.1\|3793656_3794403_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP009104.1\|WP_000029329.1\|3795480_3796017_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP009104.1\|WP_000039843.1\|3800983_3801718_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP009104.1\|WP_039264541.1\|3783135_3783897_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP009104.1\|WP_001233938.1\|3797673_3800373_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP009104.1\|WP_000956458.1\|3800566_3800719_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP009104.1\|WP_000206440.1\|3794413_3795469_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843

Protein	Function_ID	Function_description	E-value
NZ_CP009104.1\|WP_000246138.1\|3785402_3786113_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_CP009104.1\|WP_001246104.1\|3786636_3786960_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP009104.1\|WP_000144861.1\|3792104_3793028_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	6.67486e-158
NZ_CP009104.1\|WP_000517476.1\|3786131_3786443_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP009104.1\|WP_000372108.1\|3789043_3789952_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP009104.1\|WP_000281442.1\|3793024_3793675_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	7.04911e-92
NZ_CP009104.1\|WP_001090345.1\|3787614_3789042_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP009104.1\|WP_001173673.1\|3787009_3787615_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP009104.1\|WP_000568943.1\|3783877_3784927_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP009104.1\|WP_000063176.1\|3791814_3792108_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
NZ_CP009104.1\|WP_000490402.1\|3790203_3791241_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP009104.1\|WP_001219242.1\|3784923_3785403_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP009104.1\|WP_001084075.1\|3796013_3797576_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP009104.1\|WP_000085068.1\|3793656_3794403_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	4.95914e-49
NZ_CP009104.1\|WP_000029329.1\|3795480_3796017_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	1.12087e-29
NZ_CP009104.1\|WP_000039843.1\|3800983_3801718_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.99311e-138
NZ_CP009104.1\|WP_039264541.1\|3783135_3783897_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	6.04562e-149
NZ_CP009104.1\|WP_001233938.1\|3797673_3800373_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.43239e-178
NZ_CP009104.1\|WP_000956458.1\|3800566_3800719_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP009104.1\|WP_000206440.1\|3794413_3795469_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.62632e-155

>NZ_CP009104.1|WP_000490402.1|3790203_3791241_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP009104.1|WP_000372108.1|3789043_3789952_-|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP009104.1|WP_001090345.1|3787614_3789042_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAEQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARIDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPKNEAAVASSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP009104.1|WP_001173673.1|3787009_3787615_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP009104.1|WP_001246104.1|3786636_3786960_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP009104.1|WP_000517476.1|3786131_3786443_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP009104.1|WP_000246138.1|3785402_3786113_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP009104.1|WP_001219242.1|3784923_3785403_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP009104.1|WP_000568943.1|3783877_3784927_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP009104.1|WP_039264541.1|3783135_3783897_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGSRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPDTDFAAADEGYVSITPLHVDLTAHNAQDVVSDWLNSVGVGTQW
>NZ_CP009104.1|WP_000063176.1|3791814_3792108_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP009104.1|WP_000144861.1|3792104_3793028_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>NZ_CP009104.1|WP_000281442.1|3793024_3793675_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDTFTIECRSFAPELCTGQQLCFNLRANPTICKAGKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFVQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP009104.1|WP_000085068.1|3793656_3794403_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSDPELLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNACDALCNAYQQYQDHFHKLKVSLPKLQDECWWEGKHDGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>NZ_CP009104.1|WP_000206440.1|3794413_3795469_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_CP009104.1|WP_000029329.1|3795480_3796017_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGERASLRRSTTVNDVCLTDGFRLFLKNRQIKWQDEPEWRITALALIAAVSANVKAIDERQPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRAVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQNQ
>NZ_CP009104.1|WP_001084075.1|3796013_3797576_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQSSFAPKDYRRWDDIWEDGLEAEKLREALLSLEHAFQFGPDSPSFMQDFEVLMGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCSHCSALALFSLQLNAPSGGKGYRTGIRGGGPMTTLIELQEYQGNQQAPLWRKLWLNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQDDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLDKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLSKWNKEIWLFARQDFDERVFTNPYEPVDLERVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP009104.1|WP_001233938.1|3797673_3800373_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGQPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQESIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPTSSLSLFHSRFAFSDRQRIETKTLARFGKEGSSQRAGKALISTQVLEQSVDCDLDEMISDLAPIDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPDEEWFGSAMRNSAYIYPDHGRIWLTQRVLRQQGAIQMPHSARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYTTGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRQWCIEQRQDPEMANVILVTDNESCGYSATEGLIGKVG
>NZ_CP009104.1|WP_000956458.1|3800566_3800719_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP009104.1|WP_000039843.1|3800983_3801718_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP009104_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009104_3

3817417-3818055

Unclear

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
GGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

10 spacers

The CRISPR arrays of NZ_CP009104_3

>merge|NZ_CP009104|3|3817417-3818055|CRISPRCasFinder,CRT,PILER-CR
TGGTTTATCCCCGCTGGCGCGGGGAACACATAAACTTTCCGCCGATCTCAAGAGCGGCACGCGGTTTATCCCCGCTGGCGCGGGGAACACCTCAAAAAACTTGAAATCAAAACCGTTGAAGACGGTTTATCCCCGCTGGCGCGGGGAACACATATCAGCGTTATCAACCGCGATTTCCGTCTCCGGTTTATCCCCGCTGGCGCGGGGAACACTGCCTTTATATATGCCGGAGTGTCGTTGTTATCGGTTTATCCCCGCTGGCGCGGGGAACACCAGCTCACTACATGGGAGAAATAAACGCCATTCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAGATTACGTTGAATTGGCTTTCCGTCAGCGGTTTATCCCCGCTGGCGCGGGGAACACCCCGTTTGGGGGTACGAGTAGGGATCATTGGCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGGTCATGGTGGAAACCAACGGTCCCGGTAGCGGTTTATCCCCGCTGGCGCGGGGAACACCGATCTCCGTCTCGCGTCGTATATGTGATTGTCGGTTTATCCCCGCTGGCGCGGGGAACACCCCATTAAGATTTTGCAGGGTAAGTGTGATCTCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP009104|3|3|3817417-3818055|CRISPRCasFinder
TGGTTTATCCCCGCTGGCGCGGGGAACAC	ATAAACTTTCCGCCGATCTCAAGAGCGGCACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTCAAAAAACTTGAAATCAAAACCGTTGAAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATATCAGCGTTATCAACCGCGATTTCCGTCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCTTTATATATGCCGGAGTGTCGTTGTTAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCTCACTACATGGGAGAAATAAACGCCATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCTGAGATTACGTTGAATTGGCTTTCCGTCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCCGTTTGGGGGTACGAGTAGGGATCATTGGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGGTCATGGTGGAAACCAACGGTCCCGGTAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGATCTCCGTCTCGCGTCGTATATGTGATTGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCCATTAAGATTTTGCAGGGTAAGTGTGATCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP009104|3|2|3817417-3818055|CRT
TGGTTTATCCCCGCTGGCGCGGGGAACAC	ATAAACTTTCCGCCGATCTCAAGAGCGGCACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTCAAAAAACTTGAAATCAAAACCGTTGAAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATATCAGCGTTATCAACCGCGATTTCCGTCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCTTTATATATGCCGGAGTGTCGTTGTTAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCTCACTACATGGGAGAAATAAACGCCATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCTGAGATTACGTTGAATTGGCTTTCCGTCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCCGTTTGGGGGTACGAGTAGGGATCATTGGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGGTCATGGTGGAAACCAACGGTCCCGGTAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGATCTCCGTCTCGCGTCGTATATGTGATTGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCCATTAAGATTTTGCAGGGTAAGTGTGATCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP009104|3|2|3817418-3817689|PILER-CR
GGTTTATCCCCGCTGGCGCGGGGAACAC	ATAAACTTTCCGCCGATCTCAAGAGCGGCACGC
GGTTTATCCCCGCTGGCGCGGGGAACAC	CTCAAAAAACTTGAAATCAAAACCGTTGAAGAC
GGTTTATCCCCGCTGGCGCGGGGAACAC	ATATCAGCGTTATCAACCGCGATTTCCGTCTCC
GGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCTTTATATATGCCGGAGTGTCGTTGTTATC
GGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009104.1\|WP_000210878.1\|3821676_3823314_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP009104.1\|WP_001071648.1\|3823541_3824333_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP009104.1\|WP_001288227.1\|3819204_3819345_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009104.1\|WP_000254745.1\|3824403_3824739_-\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP009104.1\|WP_001130266.1\|3807599_3808175_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP009104.1\|WP_001347765.1\|3806060_3807332_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP009104.1\|WP_000581939.1\|3824738_3824987_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP009104.1\|WP_000036723.1\|3820290_3821589_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP009104.1\|WP_001164567.1\|3813995_3815273_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP009104.1\|WP_000039693.1\|3815299_3816778_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP009104.1\|WP_000021321.1\|3812891_3813677_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP009104.1\|WP_000046790.1\|3827346_3828648_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP009104.1\|WP_000059312.1\|3811367_3812822_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP009104.1\|WP_001299652.1\|3809179_3809959_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP009104.1\|WP_001199970.1\|3818394_3819066_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP009104.1\|WP_001395988.1\|3808322_3809183_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP009104.1\|WP_000186450.1\|3828704_3831461_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP009104.1\|WP_000147666.1\|3809936_3811346_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP009104.1\|WP_000226815.1\|3825064_3827299_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP009104.1\|WP_000109367.1\|3807322_3807583_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289

Protein	Function_ID	Function_description	E-value
NZ_CP009104.1\|WP_000210878.1\|3821676_3823314_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP009104.1\|WP_001071648.1\|3823541_3824333_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NZ_CP009104.1\|WP_000254745.1\|3824403_3824739_-\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	2.42227e-74
NZ_CP009104.1\|WP_001130266.1\|3807599_3808175_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NZ_CP009104.1\|WP_001347765.1\|3806060_3807332_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	1.51231e-125
NZ_CP009104.1\|WP_000581939.1\|3824738_3824987_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	2.78691e-47
NZ_CP009104.1\|WP_000036723.1\|3820290_3821589_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP009104.1\|WP_001164567.1\|3813995_3815273_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	3.44047e-29
NZ_CP009104.1\|WP_000039693.1\|3815299_3816778_+\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	1.97427e-109
NZ_CP009104.1\|WP_000021321.1\|3812891_3813677_-\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.84461e-140
NZ_CP009104.1\|WP_000046790.1\|3827346_3828648_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP009104.1\|WP_000059312.1\|3811367_3812822_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.25325e-82
NZ_CP009104.1\|WP_001299652.1\|3809179_3809959_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.56693e-62
NZ_CP009104.1\|WP_001199970.1\|3818394_3819066_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.73859e-155
NZ_CP009104.1\|WP_001395988.1\|3808322_3809183_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	1.15983e-87
NZ_CP009104.1\|WP_000186450.1\|3828704_3831461_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP009104.1\|WP_000147666.1\|3809936_3811346_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.50431e-51
NZ_CP009104.1\|WP_000226815.1\|3825064_3827299_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP009104.1\|WP_000109367.1\|3807322_3807583_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	8.55479e-42

>NZ_CP009104.1|WP_000039693.1|3815299_3816778_+|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASSVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
>NZ_CP009104.1|WP_001164567.1|3813995_3815273_+|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP009104.1|WP_000021321.1|3812891_3813677_-|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP009104.1|WP_000059312.1|3811367_3812822_-|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREVMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP009104.1|WP_000147666.1|3809936_3811346_-|MFS-transporter
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP009104.1|WP_001299652.1|3809179_3809959_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP009104.1|WP_001395988.1|3808322_3809183_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSQARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQVDVGVVDDWKVVLEALVTNIHADCQ
>NZ_CP009104.1|WP_001130266.1|3807599_3808175_+|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP009104.1|WP_000109367.1|3807322_3807583_+|ferredoxin-family-protein
MSVAHNLWRVADAPHIVPADSVERQMVQRLINACPAGLFSLTPEGDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP009104.1|WP_001347765.1|3806060_3807332_+|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGVTTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL
>NZ_CP009104.1|WP_001199970.1|3818394_3819066_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP009104.1|WP_001288227.1|3819204_3819345_+|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFIQI
>NZ_CP009104.1|WP_000036723.1|3820290_3821589_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP009104.1|WP_000210878.1|3821676_3823314_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP009104.1|WP_001071648.1|3823541_3824333_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP009104.1|WP_000254745.1|3824403_3824739_-|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPYTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP009104.1|WP_000581939.1|3824738_3824987_-|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNEITPENLHENIDWGEPKDKEVW
>NZ_CP009104.1|WP_000226815.1|3825064_3827299_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP009104.1|WP_000046790.1|3827346_3828648_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKALFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAIRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_CP009104.1|WP_000186450.1|3828704_3831461_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009104_2	2.3\|3791475\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791475-3791506	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246449-246480	2	0.938
NZ_CP009104_2	2.6\|3791658\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791658-3791689	32	NZ_CP053858	Rhizobium pusense strain 76 plasmid pR76, complete sequence	455664-455695	5	0.844
NZ_CP009104_3	3.1\|3817446\|32\|NZ_CP009104\|CRISPRCasFinder,CRT	3817446-3817477	32	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	1028485-1028516	7	0.781
NZ_CP009104_3	3.2\|3817507\|32\|NZ_CP009104\|CRISPRCasFinder,CRT	3817507-3817538	32	MH807820	Dickeya phage Coodle, complete genome	4693-4724	7	0.781
NZ_CP009104_3	3.2\|3817507\|32\|NZ_CP009104\|CRISPRCasFinder,CRT	3817507-3817538	32	MT857002	Salmonella phage pSal-SNUABM-02, complete genome	39215-39246	7	0.781
NZ_CP009104_3	3.8\|3817873\|32\|NZ_CP009104\|CRISPRCasFinder,CRT	3817873-3817904	32	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	468691-468722	7	0.781
NZ_CP009104_3	3.8\|3817873\|32\|NZ_CP009104\|CRISPRCasFinder,CRT	3817873-3817904	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	428674-428705	7	0.781
NZ_CP009104_3	3.8\|3817873\|32\|NZ_CP009104\|CRISPRCasFinder,CRT	3817873-3817904	32	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	628096-628127	7	0.781
NZ_CP009104_3	3.8\|3817873\|32\|NZ_CP009104\|CRISPRCasFinder,CRT	3817873-3817904	32	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	768678-768709	7	0.781
NZ_CP009104_3	3.11\|3817446\|33\|NZ_CP009104\|PILER-CR	3817446-3817478	33	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	1028485-1028517	7	0.788
NZ_CP009104_3	3.12\|3817507\|33\|NZ_CP009104\|PILER-CR	3817507-3817539	33	MT857002	Salmonella phage pSal-SNUABM-02, complete genome	39214-39246	7	0.788
NZ_CP009104_3	3.12\|3817507\|33\|NZ_CP009104\|PILER-CR	3817507-3817539	33	MH807820	Dickeya phage Coodle, complete genome	4693-4725	7	0.788
NZ_CP009104_2	2.1\|3791353\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791353-3791384	32	HM029250	Lactococcus phage 949, complete genome	55071-55102	8	0.75
NZ_CP009104_2	2.6\|3791658\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791658-3791689	32	NC_003037	Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence	270741-270772	8	0.75
NZ_CP009104_2	2.6\|3791658\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791658-3791689	32	NC_017327	Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence	1429126-1429157	8	0.75
NZ_CP009104_2	2.6\|3791658\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791658-3791689	32	NZ_CP021798	Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence	450512-450543	8	0.75
NZ_CP009104_2	2.6\|3791658\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791658-3791689	32	NC_017324	Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence	1363718-1363749	8	0.75
NZ_CP009104_2	2.6\|3791658\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791658-3791689	32	NZ_CP009145	Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence	259589-259620	8	0.75
NZ_CP009104_2	2.6\|3791658\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791658-3791689	32	NZ_CP021801	Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence	156145-156176	8	0.75
NZ_CP009104_2	2.6\|3791658\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791658-3791689	32	NZ_CP021819	Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence	108131-108162	8	0.75
NZ_CP009104_2	2.6\|3791658\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791658-3791689	32	NZ_CP021824	Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence	136871-136902	8	0.75
NZ_CP009104_2	2.6\|3791658\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791658-3791689	32	NZ_CP021813	Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence	308731-308762	8	0.75
NZ_CP009104_2	2.6\|3791658\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791658-3791689	32	NC_018683	Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence	386165-386196	8	0.75
NZ_CP009104_2	2.6\|3791658\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791658-3791689	32	NZ_CP021794	Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence	1141409-1141440	8	0.75
NZ_CP009104_2	2.6\|3791658\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791658-3791689	32	NZ_CP021809	Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence	239251-239282	8	0.75
NZ_CP009104_2	2.6\|3791658\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791658-3791689	32	NZ_CP021217	Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence	1491172-1491203	8	0.75
NZ_CP009104_2	2.6\|3791658\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791658-3791689	32	NZ_CP026526	Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence	173783-173814	8	0.75
NZ_CP009104_2	2.6\|3791658\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791658-3791689	32	NZ_CP019483	Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence	251909-251940	8	0.75
NZ_CP009104_2	2.6\|3791658\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791658-3791689	32	NZ_CP019486	Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence	227862-227893	8	0.75
NZ_CP009104_2	2.6\|3791658\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791658-3791689	32	NC_020527	Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence	270403-270434	8	0.75
NZ_CP009104_3	3.1\|3817446\|32\|NZ_CP009104\|CRISPRCasFinder,CRT	3817446-3817477	32	KX752698	Mycobacterium phage Tonenili, complete genome	136893-136924	8	0.75
NZ_CP009104_3	3.8\|3817873\|32\|NZ_CP009104\|CRISPRCasFinder,CRT	3817873-3817904	32	NC_010811	Ralstonia phage RSL1, complete genome	67286-67317	8	0.75
NZ_CP009104_3	3.8\|3817873\|32\|NZ_CP009104\|CRISPRCasFinder,CRT	3817873-3817904	32	AB366653	Ralstonia phage RSL1 DNA, complete genome	67286-67317	8	0.75
NZ_CP009104_2	2.5\|3791597\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791597-3791628	32	MT708550	Achromobacter phage Mano, complete genome	2686-2717	9	0.719
NZ_CP009104_3	3.1\|3817446\|32\|NZ_CP009104\|CRISPRCasFinder,CRT	3817446-3817477	32	NZ_CP039905	Agrobacterium tumefaciens strain CFBP6623 plasmid pAtCFBP6623a, complete sequence	175988-176019	9	0.719
NZ_CP009104_3	3.1\|3817446\|32\|NZ_CP009104\|CRISPRCasFinder,CRT	3817446-3817477	32	NZ_CP039909	Agrobacterium tumefaciens strain CFBP6624 plasmid pAtCFBP6624, complete sequence	115836-115867	9	0.719
NZ_CP009104_3	3.1\|3817446\|32\|NZ_CP009104\|CRISPRCasFinder,CRT	3817446-3817477	32	NZ_LS974446	Rhizobium selenitireducens ATCC BAA-1503 isolate T2.30D-1.1_plasmid plasmid 1, complete sequence	14981-15012	9	0.719
NZ_CP009104_3	3.3\|3817568\|32\|NZ_CP009104\|CRISPRCasFinder,CRT	3817568-3817599	32	AP014303	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S29-C153, * SEQUENCING IN PROGRESS *	4922-4953	9	0.719
NZ_CP009104_3	3.10\|3817995\|32\|NZ_CP009104\|CRISPRCasFinder,CRT	3817995-3818026	32	MH719082	Escherichia phage vB_EcoM_IME392, complete genome	494-525	9	0.719
NZ_CP009104_3	3.11\|3817446\|33\|NZ_CP009104\|PILER-CR	3817446-3817478	33	NZ_CP039905	Agrobacterium tumefaciens strain CFBP6623 plasmid pAtCFBP6623a, complete sequence	175988-176020	9	0.727
NZ_CP009104_3	3.11\|3817446\|33\|NZ_CP009104\|PILER-CR	3817446-3817478	33	NZ_CP039909	Agrobacterium tumefaciens strain CFBP6624 plasmid pAtCFBP6624, complete sequence	115836-115868	9	0.727
NZ_CP009104_3	3.11\|3817446\|33\|NZ_CP009104\|PILER-CR	3817446-3817478	33	NZ_LS974446	Rhizobium selenitireducens ATCC BAA-1503 isolate T2.30D-1.1_plasmid plasmid 1, complete sequence	14981-15013	9	0.727
NZ_CP009104_3	3.3\|3817568\|32\|NZ_CP009104\|CRISPRCasFinder,CRT	3817568-3817599	32	MK250016	Prevotella phage Lak-A1, complete genome	348544-348575	10	0.688
NZ_CP009104_2	2.1\|3791353\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791353-3791384	32	NC_009760	Bacillus phage 0305phi8-36, complete genome	157057-157088	11	0.656
NZ_CP009104_2	2.4\|3791536\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791536-3791567	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1789771-1789802	11	0.656
NZ_CP009104_2	2.4\|3791536\|32\|NZ_CP009104\|PILER-CR,CRISPRCasFinder,CRT	3791536-3791567	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	23490-23521	11	0.656
NZ_CP009104_3	3.3\|3817568\|32\|NZ_CP009104\|CRISPRCasFinder,CRT	3817568-3817599	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1997929-1997960	11	0.656

1. spacer 2.3|3791475|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 2, identity: 0.938

cttaccacccagacactgatactccacataaa	CRISPR spacer
ctttccacccaggcactgatactccacataaa	Protospacer
*** ********.*******************

2. spacer 2.6|3791658|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053858 (Rhizobium pusense strain 76 plasmid pR76, complete sequence) position: , mismatch: 5, identity: 0.844

atgtcgagcgcgttgacagctatatt-cgccgt	CRISPR spacer
ttgacgagcgcgtcgacagctatattgcgcca-	Protospacer
 ** *********.************ ****.

3. spacer 3.1|3817446|32|NZ_CP009104|CRISPRCasFinder,CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 7, identity: 0.781

ataaac-tttccgccgatctcaagagcggcacg	CRISPR spacer
-caaacgacaccgccgatctcaagaacgccacg	Protospacer
 .****  . ***************.** ****

4. spacer 3.2|3817507|32|NZ_CP009104|CRISPRCasFinder,CRT matches to MH807820 (Dickeya phage Coodle, complete genome) position: , mismatch: 7, identity: 0.781

ctcaaaaaacttgaaatcaaaaccgttgaaga---	CRISPR spacer
gtcaagaaagttgaaatcaaaacc---gaagcccc	Protospacer
 ****.*** **************   ****

5. spacer 3.2|3817507|32|NZ_CP009104|CRISPRCasFinder,CRT matches to MT857002 (Salmonella phage pSal-SNUABM-02, complete genome) position: , mismatch: 7, identity: 0.781

ctcaaaaaacttgaaatcaaaaccgttgaaga---	CRISPR spacer
gtcaagaaagttgaaatcaaaacc---gaagcccc	Protospacer
 ****.*** **************   ****

6. spacer 3.8|3817873|32|NZ_CP009104|CRISPRCasFinder,CRT matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

ctggtcatggtggaaaccaacggtcccggtag	CRISPR spacer
cggatcatggtggaaaccaactggcccggcgc	Protospacer
* *.***************** * *****..

7. spacer 3.8|3817873|32|NZ_CP009104|CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.781

ctggtcatggtggaaaccaacggtcccggtag	CRISPR spacer
cggatcatggtggaaaccaactggcccggcgc	Protospacer
* *.***************** * *****..

8. spacer 3.8|3817873|32|NZ_CP009104|CRISPRCasFinder,CRT matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 7, identity: 0.781

ctggtcatggtggaaaccaacggtcccggtag	CRISPR spacer
cggatcatggtggaaaccaactggcccggcgc	Protospacer
* *.***************** * *****..

9. spacer 3.8|3817873|32|NZ_CP009104|CRISPRCasFinder,CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

ctggtcatggtggaaaccaacggtcccggtag	CRISPR spacer
cggatcatggtggaaaccaactggcccggcgc	Protospacer
* *.***************** * *****..

10. spacer 3.11|3817446|33|NZ_CP009104|PILER-CR matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 7, identity: 0.788

ataaac-tttccgccgatctcaagagcggcacgc	CRISPR spacer
-caaacgacaccgccgatctcaagaacgccacgc	Protospacer
 .****  . ***************.** *****

11. spacer 3.12|3817507|33|NZ_CP009104|PILER-CR matches to MT857002 (Salmonella phage pSal-SNUABM-02, complete genome) position: , mismatch: 7, identity: 0.788

ctcaaaaaacttgaaatcaaaaccgttgaagac---	CRISPR spacer
gtcaagaaagttgaaatcaaaacc---gaagccccg	Protospacer
 ****.*** **************   **** *

12. spacer 3.12|3817507|33|NZ_CP009104|PILER-CR matches to MH807820 (Dickeya phage Coodle, complete genome) position: , mismatch: 7, identity: 0.788

ctcaaaaaacttgaaatcaaaaccgttgaagac---	CRISPR spacer
gtcaagaaagttgaaatcaaaacc---gaagccccg	Protospacer
 ****.*** **************   **** *

13. spacer 2.1|3791353|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to HM029250 (Lactococcus phage 949, complete genome) position: , mismatch: 8, identity: 0.75

cagat---tatcttctttttcaatccagccaccga	CRISPR spacer
---atctatctcttctttttctgtccagccaccat	Protospacer
   **   * *********** .**********.

14. spacer 2.6|3791658|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

atgtcgagcgcgttgacagctatattcgccgt	CRISPR spacer
ggtttgagcgcattaacagctatattcggcat	Protospacer
.  *.******.**.************* *.*

15. spacer 2.6|3791658|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to NC_017327 (Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence) position: , mismatch: 8, identity: 0.75

atgtcgagcgcgttgacagctatattcgccgt	CRISPR spacer
ggtttgagcgcattaacagctatattcggcat	Protospacer
.  *.******.**.************* *.*

16. spacer 2.6|3791658|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

atgtcgagcgcgttgacagctatattcgccgt	CRISPR spacer
ggtttgagcgcattaacagctatattcggcat	Protospacer
.  *.******.**.************* *.*

17. spacer 2.6|3791658|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 8, identity: 0.75

atgtcgagcgcgttgacagctatattcgccgt	CRISPR spacer
ggtttgagcgcattaacagctatattcggcat	Protospacer
.  *.******.**.************* *.*

18. spacer 2.6|3791658|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009145 (Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

atgtcgagcgcgttgacagctatattcgccgt	CRISPR spacer
ggtttgagcgcattaacagctatattcggcat	Protospacer
.  *.******.**.************* *.*

19. spacer 2.6|3791658|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021801 (Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

atgtcgagcgcgttgacagctatattcgccgt	CRISPR spacer
ggtttgagcgcattaacagctatattcggcat	Protospacer
.  *.******.**.************* *.*

20. spacer 2.6|3791658|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021819 (Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

atgtcgagcgcgttgacagctatattcgccgt	CRISPR spacer
ggtttgagcgcattaacagctatattcggcat	Protospacer
.  *.******.**.************* *.*

21. spacer 2.6|3791658|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021824 (Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

atgtcgagcgcgttgacagctatattcgccgt	CRISPR spacer
ggtttgagcgcattaacagctatattcggcat	Protospacer
.  *.******.**.************* *.*

22. spacer 2.6|3791658|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

atgtcgagcgcgttgacagctatattcgccgt	CRISPR spacer
ggtttgagcgcattaacagctatattcggcat	Protospacer
.  *.******.**.************* *.*

23. spacer 2.6|3791658|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to NC_018683 (Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence) position: , mismatch: 8, identity: 0.75

atgtcgagcgcgttgacagctatattcgccgt	CRISPR spacer
ggtttgagcgcattaacagctatattcggcat	Protospacer
.  *.******.**.************* *.*

24. spacer 2.6|3791658|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

atgtcgagcgcgttgacagctatattcgccgt	CRISPR spacer
ggtttgagcgcattaacagctatattcggcat	Protospacer
.  *.******.**.************* *.*

25. spacer 2.6|3791658|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021809 (Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

atgtcgagcgcgttgacagctatattcgccgt	CRISPR spacer
ggtttgagcgcattaacagctatattcggcat	Protospacer
.  *.******.**.************* *.*

26. spacer 2.6|3791658|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021217 (Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

atgtcgagcgcgttgacagctatattcgccgt	CRISPR spacer
ggtttgagcgcattaacagctatattcggcat	Protospacer
.  *.******.**.************* *.*

27. spacer 2.6|3791658|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026526 (Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

atgtcgagcgcgttgacagctatattcgccgt	CRISPR spacer
ggtttgagcgcattaacagctatattcggcat	Protospacer
.  *.******.**.************* *.*

28. spacer 2.6|3791658|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019483 (Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

atgtcgagcgcgttgacagctatattcgccgt	CRISPR spacer
ggtttgagcgcattaacagctatattcggcat	Protospacer
.  *.******.**.************* *.*

29. spacer 2.6|3791658|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019486 (Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

atgtcgagcgcgttgacagctatattcgccgt	CRISPR spacer
ggtttgagcgcattaacagctatattcggcat	Protospacer
.  *.******.**.************* *.*

30. spacer 2.6|3791658|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

atgtcgagcgcgttgacagctatattcgccgt	CRISPR spacer
ggtttgagcgcattaacagctatattcggcat	Protospacer
.  *.******.**.************* *.*

31. spacer 3.1|3817446|32|NZ_CP009104|CRISPRCasFinder,CRT matches to KX752698 (Mycobacterium phage Tonenili, complete genome) position: , mismatch: 8, identity: 0.75

ataaactttccgccgatctcaagagcggcacg	CRISPR spacer
acctgctttccgccaagctcaagagcggtgcg	Protospacer
*.  .*********.* ***********..**

32. spacer 3.8|3817873|32|NZ_CP009104|CRISPRCasFinder,CRT matches to NC_010811 (Ralstonia phage RSL1, complete genome) position: , mismatch: 8, identity: 0.75

ctggtcatggtggaaaccaacggtcccggtag	CRISPR spacer
tggaatctggtggaaaccaacggtccgggtac	Protospacer
. *. . ******************* ****

33. spacer 3.8|3817873|32|NZ_CP009104|CRISPRCasFinder,CRT matches to AB366653 (Ralstonia phage RSL1 DNA, complete genome) position: , mismatch: 8, identity: 0.75

ctggtcatggtggaaaccaacggtcccggtag	CRISPR spacer
tggaatctggtggaaaccaacggtccgggtac	Protospacer
. *. . ******************* ****

34. spacer 2.5|3791597|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to MT708550 (Achromobacter phage Mano, complete genome) position: , mismatch: 9, identity: 0.719

gcaaattaccgccgggctaacgtttgatctca	CRISPR spacer
tagcattaccgccgggcttacctttgaccgcc	Protospacer
  . ************** ** *****.* *

35. spacer 3.1|3817446|32|NZ_CP009104|CRISPRCasFinder,CRT matches to NZ_CP039905 (Agrobacterium tumefaciens strain CFBP6623 plasmid pAtCFBP6623a, complete sequence) position: , mismatch: 9, identity: 0.719

ataaactttccgccgatctcaagagcggcacg	CRISPR spacer
gcggcctttccaccgatctcaagcgcggcgcc	Protospacer
.... ******.*********** *****.*

36. spacer 3.1|3817446|32|NZ_CP009104|CRISPRCasFinder,CRT matches to NZ_CP039909 (Agrobacterium tumefaciens strain CFBP6624 plasmid pAtCFBP6624, complete sequence) position: , mismatch: 9, identity: 0.719

ataaactttccgccgatctcaagagcggcacg	CRISPR spacer
gcggcctttccaccgatctcaagcgcggcgcc	Protospacer
.... ******.*********** *****.*

37. spacer 3.1|3817446|32|NZ_CP009104|CRISPRCasFinder,CRT matches to NZ_LS974446 (Rhizobium selenitireducens ATCC BAA-1503 isolate T2.30D-1.1_plasmid plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

ataaactttccgccgatctcaagagcggcacg	CRISPR spacer
gcggcctttccaccgatctcaagcgcggcgcc	Protospacer
.... ******.*********** *****.*

38. spacer 3.3|3817568|32|NZ_CP009104|CRISPRCasFinder,CRT matches to AP014303 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S29-C153, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

atatcagcgttatcaaccgcgatttccgtctc	CRISPR spacer
gcagcagctttatcaaccgcgacttcctcgcc	Protospacer
..* **** *************.**** . .*

39. spacer 3.10|3817995|32|NZ_CP009104|CRISPRCasFinder,CRT matches to MH719082 (Escherichia phage vB_EcoM_IME392, complete genome) position: , mismatch: 9, identity: 0.719

cccattaagattttgcagggtaagtgtgatct	CRISPR spacer
tcagttaagactttgctgggtaagtgtaacga	Protospacer
.* .******.***** **********.*.

40. spacer 3.11|3817446|33|NZ_CP009104|PILER-CR matches to NZ_CP039905 (Agrobacterium tumefaciens strain CFBP6623 plasmid pAtCFBP6623a, complete sequence) position: , mismatch: 9, identity: 0.727

ataaactttccgccgatctcaagagcggcacgc	CRISPR spacer
gcggcctttccaccgatctcaagcgcggcgccc	Protospacer
.... ******.*********** *****.* *

41. spacer 3.11|3817446|33|NZ_CP009104|PILER-CR matches to NZ_CP039909 (Agrobacterium tumefaciens strain CFBP6624 plasmid pAtCFBP6624, complete sequence) position: , mismatch: 9, identity: 0.727

ataaactttccgccgatctcaagagcggcacgc	CRISPR spacer
gcggcctttccaccgatctcaagcgcggcgccc	Protospacer
.... ******.*********** *****.* *

42. spacer 3.11|3817446|33|NZ_CP009104|PILER-CR matches to NZ_LS974446 (Rhizobium selenitireducens ATCC BAA-1503 isolate T2.30D-1.1_plasmid plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.727

ataaactttccgccgatctcaagagcggcacgc	CRISPR spacer
gcggcctttccaccgatctcaagcgcggcgccc	Protospacer
.... ******.*********** *****.* *

43. spacer 3.3|3817568|32|NZ_CP009104|CRISPRCasFinder,CRT matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 10, identity: 0.688

atatcagcgttatcaaccgcgatttccgtctc	CRISPR spacer
atatcatctttatcaaccgcgataagaaagta	Protospacer
****** * **************    .  *

44. spacer 2.1|3791353|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to NC_009760 (Bacillus phage 0305phi8-36, complete genome) position: , mismatch: 11, identity: 0.656

cagattatcttctttttcaatccagccaccga	CRISPR spacer
ttgattatcttcttcttcaatcgagatgagcg	Protospacer
. ************.******* ** ..   .

45. spacer 2.4|3791536|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 11, identity: 0.656

tcacgcggagtgagacggcgtacgagcattgc	CRISPR spacer
aggagcggagtgtgaaggcgtacgagcccact	Protospacer
  . ******** ** *********** .  .

46. spacer 2.4|3791536|32|NZ_CP009104|PILER-CR,CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 11, identity: 0.656

tcacgcggagtgagacggcgtacgagcattgc	CRISPR spacer
aggagcggagtgtgaaggcgtacgagcccact	Protospacer
  . ******** ** *********** .  .

47. spacer 3.3|3817568|32|NZ_CP009104|CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

atatcagcgttatcaaccgcgatttccgtctc	CRISPR spacer
gcgcttccgttatcatccgcgagttccgtcaa	Protospacer
.....  ******** ****** *******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

640366 : 654551

Enterobacteria_phage(76.92%)

integrase,transposase

attL 629554:629569|attR 662108:662123

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
629554:629569	attL	NA	NA	NA	NA
WP_001572309.1\|640366_641623_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	2.5e-75	41.6
WP_032291790.1\|641772_643236_+	hypothetical protein	NA	NA	NA	NA
WP_000446151.1\|643601_644174_-	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	2.7e-93	95.2
WP_000638634.1\|644247_644748_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_039264336.1\|644744_645479_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.0e-129	98.4
WP_052214776.1\|646030_646252_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.3e-35	100.0
WP_039264337.1\|646293_646893_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	6.0e-51	81.8
WP_001244670.1\|646885_647173_+	hypothetical protein	Q7M2A0	Enterobacteria_phage	2.5e-47	96.8
WP_000459310.1\|647165_647621_+	hypothetical protein	Q7M298	Enterobacteria_phage	8.0e-64	98.2
WP_000422741.1\|647712_648138_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_000624722.1\|648134_648485_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_039264366.1\|648515_650129_+\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.8e-182	63.4
WP_000856729.1\|650296_650617_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_039264340.1\|650631_652965_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	99.0
WP_087889224.1\|653311_653506_+\|integrase	integrase	Q38404	Enterobacteria_phage	2.2e-23	96.1
WP_032214558.1\|653723_654551_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	1.0e-56	42.4
662108:662123	attR	NA	NA	NA	NA

DBSCAN-SWA_2

949508 : 1006372

uncultured_Mediterranean_phage(14.29%)

integrase,plate,tRNA,protease

attL 940905:940920|attR 1002267:1002282

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
940905:940920	attL	NA	NA	NA	NA
WP_000753945.1\|949508_950933_+\|protease	serine endoprotease DegP	A0A1B1IT49	uncultured_Mediterranean_phage	1.9e-26	28.8
WP_000929439.1\|951087_952245_+	DNA-binding transcriptional regulator CdaR	NA	NA	NA	NA
WP_000272188.1\|952333_952720_-	DUF3461 family protein	NA	NA	NA	NA
WP_001186650.1\|953034_953859_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_039264358.1\|953889_956562_-	bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA	NA	NA	NA
WP_001018194.1\|956623_957418_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_000246884.1\|957785_958511_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_000818114.1\|958768_959620_+	elongation factor Ts	NA	NA	NA	NA
WP_000224573.1\|959766_960492_+	UMP kinase	NA	NA	NA	NA
WP_000622418.1\|960783_961341_+	ribosome recycling factor	NA	NA	NA	NA
WP_000811923.1\|961432_962629_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_001295562.1\|962817_963576_+	(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	R9W0U9	Flavobacterium_phage	7.7e-27	44.4
WP_000922446.1\|963588_964446_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_001402027.1\|964457_965810_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_001240896.1\|965839_968272_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_000758956.1\|968393_968879_+	molecular chaperone Skp	NA	NA	NA	NA
WP_001139279.1\|968882_969908_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_000210739.1\|970012_970468_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_000565966.1\|970471_971260_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_000139659.1\|971259_972408_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_001542635.1\|972404_973001_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	3.9e-26	40.0
WP_001542637.1\|973037_976520_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	1.7e-209	36.9
WP_000055741.1\|976532_977492_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_039264359.1\|977590_979732_+	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_000901098.1\|979788_980178_+	VOC family protein	NA	NA	NA	NA
WP_001542639.1\|980242_981541_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000062312.1\|981589_981850_-	Rho-binding antiterminator	NA	NA	NA	NA
WP_000417058.1\|981836_982037_-	YaeP family protein	NA	NA	NA	NA
WP_001185290.1\|982202_982748_+	YaeQ family protein	NA	NA	NA	NA
WP_000635545.1\|982744_983167_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_000239154.1\|983180_983891_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_001260716.1\|984922_986641_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_000094031.1\|986751_987459_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001202329.1\|987455_987860_-	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000874224.1\|987977_988793_-	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001294600.1\|988832_989486_-	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_000593994.1\|989478_990510_-	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	7.2e-36	40.2
WP_001140186.1\|990697_991270_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_000279885.1\|997140_997707_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B5FPC6	Escherichia_phage	2.2e-34	45.2
WP_000666530.1\|999000_999681_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	2.6e-50	41.4
WP_001542642.1\|1002164_1002437_-	HigA family addiction module antidote protein	NA	NA	NA	NA
1002267:1002282	attR	NA	NA	NA	NA
WP_000450225.1\|1002439_1003486_-	ImpA family type VI secretion system protein	NA	NA	NA	NA
WP_039264360.1\|1003496_1004492_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_000371477.1\|1004488_1006372_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_3

1063788 : 1071836

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001285288.1\|1063788_1064892_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
WP_000893255.1\|1064903_1066157_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	5.8e-96	47.2
WP_001444700.1\|1066675_1067335_+	HNH endonuclease	NA	NA	NA	NA
WP_000942525.1\|1067313_1068384_-	DNA cytosine methyltransferase	A0A1B1IRZ3	uncultured_Mediterranean_phage	2.6e-20	29.6
WP_039264365.1\|1069667_1069889_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	5.5e-10	44.4
WP_032186123.1\|1069951_1070428_-	RadC family protein	NA	NA	NA	NA
WP_032186124.1\|1070443_1070926_-	antirestriction protein	A9J566	Pseudomonas_phage	3.4e-12	31.2
WP_032186126.1\|1071017_1071836_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	6.7e-45	37.9

DBSCAN-SWA_4

1342323 : 1400223

Enterobacteria_phage(54.39%)

portal,lysis,tRNA,protease,integrase,terminase,head,tail,capsid

attL 1352485:1352531|attR 1400646:1400692

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000912345.1\|1342323_1343709_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
WP_001143552.1\|1343744_1344266_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190288.1\|1344373_1344586_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729154.1\|1344587_1345454_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
WP_001315309.1\|1345934_1346477_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_000988379.1\|1346696_1347389_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_039264379.1\|1347419_1350029_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_000691056.1\|1350041_1351049_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
WP_001250424.1\|1351059_1351575_+	fimbria assembly protein	NA	NA	NA	NA
WP_000805422.1\|1351577_1352210_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
1352485:1352531	attL	NA	NA	NA	NA
WP_000051902.1\|1352544_1353708_-\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	3.0e-200	86.6
WP_000488407.1\|1353906_1354185_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.9e-48	97.8
WP_000763385.1\|1354232_1354451_-	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	7.5e-36	100.0
WP_001443983.1\|1354549_1354831_-	hypothetical protein	A0A0P0ZE02	Stx2-converting_phage	7.2e-47	98.9
WP_000548537.1\|1354841_1355033_-	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	2.1e-26	98.4
WP_000149544.1\|1355005_1355188_-	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	6.9e-27	96.7
WP_000611716.1\|1355184_1355865_-	YqaJ viral recombinase family protein	B6DZ61	Enterobacteria_phage	3.0e-131	98.2
WP_000100847.1\|1355861_1356647_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000995453.1\|1356652_1356949_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.8e-48	98.0
WP_023148105.1\|1357024_1357315_-	hypothetical protein	K7P6H3	Enterobacteria_phage	5.0e-27	85.1
WP_000858975.1\|1357826_1358516_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.8e-92	75.0
WP_001067458.1\|1358620_1358851_+	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
WP_001182893.1\|1358920_1359460_+	toxin YdaT domain-containing protein	K7PJT7	Enterobacteria_phage	2.2e-60	66.5
WP_000147899.1\|1359456_1360476_+	replication protein	A0A0M5M7Y1	Salmonella_phage	1.4e-111	64.4
WP_000788786.1\|1360472_1361174_+	Replication protein P	K7P6G2	Enterobacteria_phage	1.3e-129	99.6
WP_021580089.1\|1361170_1361491_+	phage exclusion protein Ren	A0A0N6WES4	Escherichia_phage	1.2e-42	95.7
WP_001070442.1\|1361541_1361874_+	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA
WP_032139864.1\|1361965_1362073_+	hypothetical protein	NA	NA	NA	NA
WP_000709069.1\|1362130_1363657_+	recombinase family protein	Q3HQV4	Burkholderia_phage	6.1e-31	27.7
WP_001567061.1\|1363768_1364086_+	hypothetical protein	NA	NA	NA	NA
WP_000068668.1\|1364290_1365220_+	hypothetical protein	A0A1R3Y6Z6	Salmonella_virus	3.0e-57	40.0
WP_001309322.1\|1365318_1365420_+	hypothetical protein	NA	NA	NA	NA
WP_001053033.1\|1365416_1365872_+	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	3.7e-61	67.5
WP_000224919.1\|1365871_1366042_+	NinE family protein	NA	NA	NA	NA
WP_000774488.1\|1366034_1366325_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	4.3e-47	94.8
WP_001099700.1\|1366321_1366684_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	7.3e-60	96.5
WP_000971068.1\|1366680_1366821_+	YlcG family protein	K7PHH3	Enterobacteria_phage	5.5e-08	67.4
WP_001204791.1\|1366906_1367290_+	antitermination protein QuuD	A0A088CD47	Shigella_phage	4.4e-55	83.3
WP_000737266.1\|1367479_1368577_-	porin OmpC	Q1MVN1	Enterobacteria_phage	2.2e-155	76.5
WP_000839596.1\|1369165_1369381_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_001135277.1\|1369380_1369878_+	lysozyme RrrD	M1FJA0	Enterobacteria_phage	5.4e-90	97.0
WP_001228695.1\|1370094_1370277_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_000738423.1\|1370367_1370661_-	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	2.0e-44	91.8
WP_001415975.1\|1371020_1371215_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	4.3e-27	96.9
WP_000453587.1\|1371603_1372149_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
WP_001027283.1\|1372123_1374049_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.5
WP_000198149.1\|1374045_1374252_+	gpW family protein	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001369921.1\|1374248_1375850_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.9e-309	98.9
WP_000123273.1\|1375830_1377150_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	2.6e-232	98.2
WP_001369910.1\|1377159_1377492_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.1e-54	98.2
WP_000063218.1\|1377547_1378573_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.4e-188	97.7
WP_000158868.1\|1378614_1379010_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	5.7e-58	95.5
WP_000753019.1\|1379021_1379375_+\|head,tail	head-tail joining protein	A0A2R9YJJ5	Escherichia_phage	2.6e-62	98.3
WP_000975051.1\|1379386_1379965_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	3.5e-80	97.9
WP_000683105.1\|1379961_1380357_+\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	1.0e-70	100.0
WP_001345558.1\|1380364_1381105_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	2.0e-128	96.7
WP_000479154.1\|1381120_1381543_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	9.7e-72	99.3
WP_000459458.1\|1381524_1381959_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.5e-64	99.2
WP_000840258.1\|1381951_1384513_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	92.6
WP_000847379.1\|1384509_1384839_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	9.6e-59	100.0
WP_001152639.1\|1384838_1385537_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.3e-134	100.0
WP_000194780.1\|1385542_1386286_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.5e-147	96.8
WP_071532093.1\|1386222_1386855_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	1.4e-95	99.0
WP_000515725.1\|1386915_1390329_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.2
WP_001233071.1\|1390399_1390999_+	Ail/Lom family outer membrane beta-barrel protein	A0A291AWV3	Escherichia_phage	4.4e-110	98.5
WP_000279163.1\|1391063_1394024_+\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	4.0e-55	53.7
WP_000885616.1\|1394023_1394599_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.5e-103	95.3
WP_000086514.1\|1394696_1395287_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	7.3e-25	38.8
WP_000836768.1\|1395603_1395837_-	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_120795384.1\|1395905_1396019_-	hypothetical protein	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000239874.1\|1396384_1397053_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001226378.1\|1397598_1399083_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001201825.1\|1399269_1400223_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
1400646:1400692	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1825706 : 1908909

Escherichia_phage(40.0%)

protease,integrase,terminase,head,tail,holin,capsid

attL 1840802:1840861|attR 1904175:1904236

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000156526.1\|1825706_1827467_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877158.1\|1827652_1828105_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000750419.1\|1828179_1829232_-	porin OmpA	NA	NA	NA	NA
WP_000288710.1\|1829588_1830098_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_000839153.1\|1830316_1830946_+	CRP-S regulon transcriptional coactivator Sxy	NA	NA	NA	NA
WP_000875019.1\|1830908_1833071_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261235.1\|1833080_1833527_-	YccF domain-containing protein	NA	NA	NA	NA
WP_000420536.1\|1833649_1835704_+	DNA helicase IV	A7KV33	Bacillus_phage	1.0e-20	27.9
WP_000424181.1\|1835735_1836194_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847791.1\|1836289_1836952_-	DUF2057 family protein	NA	NA	NA	NA
WP_001396445.1\|1837124_1837538_+	CoA-binding protein	NA	NA	NA	NA
WP_001295356.1\|1837582_1837900_-	heat shock protein HspQ	NA	NA	NA	NA
WP_000116288.1\|1837957_1839148_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000048221.1\|1839242_1839521_+	acylphosphatase	NA	NA	NA	NA
WP_001542786.1\|1839517_1839847_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_000375136.1\|1839937_1840597_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	4.0e-48	55.3
1840802:1840861	attL	NA	NA	NA	NA
WP_001367167.1\|1841004_1842024_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	2.6e-86	50.3
WP_000273163.1\|1841992_1842244_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_039264392.1\|1842310_1844713_-	exonuclease	V5UQJ3	Shigella_phage	3.7e-176	58.1
WP_000092782.1\|1844805_1844994_-	DUF1482 family protein	NA	NA	NA	NA
WP_000450222.1\|1844990_1845179_-	cell division inhibitor	NA	NA	NA	NA
WP_077632757.1\|1846033_1846249_-	hypothetical protein	I6PDF6	Cronobacter_phage	5.3e-10	84.2
WP_000380319.1\|1846404_1846557_-	DUF1391 family protein	M4QQ57	Salicola_phage	6.6e-07	53.2
WP_000948456.1\|1846868_1847345_-	hypothetical protein	A0A2D1GNH0	Pseudomonas_phage	5.7e-12	53.4
WP_000712070.1\|1847469_1847793_+	transcriptional regulator	A0A0R6PH31	Moraxella_phage	1.4e-09	43.5
WP_000693925.1\|1847776_1848202_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_039264394.1\|1848270_1849302_+	phage replisome organiser	A0A0U2RT81	Escherichia_phage	6.9e-87	70.4
WP_072130322.1\|1849213_1849756_+	replication protein	A0A0U2JGJ0	Escherichia_phage	3.6e-79	90.2
WP_039264395.1\|1849789_1850515_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	3.3e-80	65.7
WP_001151139.1\|1850530_1850938_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.2e-33	59.4
WP_029374881.1\|1850934_1851234_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	4.8e-49	94.9
WP_001373171.1\|1851262_1851418_+	hypothetical protein	NA	NA	NA	NA
WP_000991478.1\|1851414_1851726_+	hypothetical protein	A0A222YY67	Escherichia_phage	6.5e-49	79.6
WP_000829416.1\|1851855_1852074_+	hypothetical protein	H6WZG0	Escherichia_phage	1.2e-06	70.3
WP_000651125.1\|1852063_1852459_+	hypothetical protein	A0A193GYM6	Enterobacter_phage	1.6e-36	60.5
WP_024173669.1\|1852692_1852905_+	type I toxin-antitoxin system Hok family toxin	A0A0P0ZAX5	Stx2-converting_phage	1.6e-14	64.3
WP_001341173.1\|1853071_1853344_+	hypothetical protein	I6PCV7	Cronobacter_phage	1.9e-12	50.8
WP_039264396.1\|1853345_1854395_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	4.5e-110	54.6
WP_000904149.1\|1854407_1854767_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	3.3e-36	61.7
WP_001367730.1\|1854775_1855306_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	6.0e-71	71.4
WP_000917741.1\|1855548_1855746_+	hypothetical protein	A0A0P0ZDH6	Stx2-converting_phage	8.0e-29	100.0
WP_039264397.1\|1855897_1856956_+	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	5.6e-193	92.6
WP_000649753.1\|1857338_1858298_+	Shiga toxin Stx2c subunit A	Q776Q3	Enterobacteria_phage	5.6e-176	100.0
WP_000738072.1\|1858309_1858579_+	Shiga toxin Stx2a subunit B	Q6DWN4	Enterobacteria_phage	1.2e-43	100.0
WP_039264398.1\|1859080_1861045_+	SASA family carbohydrate esterase	A0A0P0ZBH7	Stx2-converting_phage	5.0e-296	79.0
WP_000284510.1\|1861539_1861755_+\|holin	class II holin family protein	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_001457151.1\|1861758_1862244_+	hypothetical protein	NA	NA	NA	NA
WP_106425492.1\|1862245_1862620_+	hypothetical protein	NA	NA	NA	NA
WP_039264399.1\|1862754_1863288_+	lysozyme	Q6H9V6	Enterobacteria_phage	5.3e-99	95.5
WP_062896309.1\|1863444_1863627_+	hypothetical protein	NA	NA	NA	NA
WP_148307808.1\|1863995_1864202_+	hypothetical protein	A0A0P0ZBL2	Stx2-converting_phage	3.3e-09	100.0
WP_000881332.1\|1864354_1864969_+	Rha family transcriptional regulator	A0A0P0ZFJ1	Escherichia_phage	1.1e-63	68.6
WP_000828070.1\|1865305_1865632_+	TonB family protein	H6WZK5	Escherichia_phage	6.3e-55	98.1
WP_000095744.1\|1865763_1865964_-	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	1.3e-29	97.0
WP_033883566.1\|1866005_1866371_+	HNH endonuclease	B6ETE5	Enterobacteria_phage	2.1e-62	96.7
WP_000958387.1\|1866660_1867224_+\|terminase	terminase small subunit	A0A0N7KZJ8	Stx2-converting_phage	8.1e-90	100.0
WP_039264401.1\|1867220_1868882_+\|terminase	terminase large subunit	Q6H9U9	Enterobacteria_phage	0.0e+00	99.8
WP_000172990.1\|1868945_1870883_+\|capsid	phage major capsid protein	Q6H9U8	Enterobacteria_phage	0.0e+00	99.7
WP_001063099.1\|1870927_1871149_+	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_000125990.1\|1873513_1873840_+\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_001029274.1\|1873849_1874200_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	6.0e-59	99.1
WP_000573391.1\|1874196_1874643_+	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_000133383.1\|1874639_1874984_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	4.2e-57	99.1
WP_039264404.1\|1875050_1875767_+	immunoglobulin domain-containing protein	A0A0P0ZDV1	Stx2-converting_phage	8.9e-126	98.7
WP_000710936.1\|1875781_1876156_+\|tail	phage tail assembly chaperone	A0A0P0ZE84	Stx2-converting_phage	3.9e-64	98.4
WP_122993267.1\|1876251_1876461_+	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	98.6
WP_039264405.1\|1876508_1879751_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	87.7
WP_000343411.1\|1879743_1880085_+\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	6.9e-52	82.3
WP_001499019.1\|1880084_1880783_+\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	2.1e-132	98.7
WP_039264406.1\|1880793_1881537_+\|tail	phage tail protein	S5MQI8	Escherichia_phage	3.8e-148	97.6
WP_122993618.1\|1881482_1882115_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	1.9e-100	91.0
WP_039264407.1\|1882354_1886041_+	DUF1983 domain-containing protein	S5MW25	Escherichia_phage	0.0e+00	87.9
WP_000078853.1\|1886239_1886380_+	type I toxin-antitoxin system Hok family toxin	S5M7Q0	Escherichia_phage	2.9e-17	95.7
WP_039264408.1\|1888242_1888455_+	hypothetical protein	NA	NA	NA	NA
WP_039264582.1\|1888466_1889141_+	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	4.3e-114	90.1
WP_022581964.1\|1889304_1889634_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_001367167.1\|1889975_1890995_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	2.6e-86	50.3
WP_000273163.1\|1890963_1891215_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_187292989.1\|1891281_1891512_-	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	1.8e-19	64.8
WP_187292990.1\|1891508_1891973_-	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	4.2e-20	46.6
WP_077784630.1\|1891908_1892970_-	hypothetical protein	A0A0U2I1R6	Escherichia_phage	4.4e-137	84.1
WP_000450222.1\|1893962_1894151_-	cell division inhibitor	NA	NA	NA	NA
WP_077632757.1\|1895003_1895219_-	hypothetical protein	I6PDF6	Cronobacter_phage	5.3e-10	84.2
WP_000380319.1\|1895374_1895527_-	DUF1391 family protein	M4QQ57	Salicola_phage	6.6e-07	53.2
WP_187292991.1\|1896932_1897130_+	hypothetical protein	S5MW25	Escherichia_phage	5.4e-25	92.3
WP_187292992.1\|1897185_1897584_+	hypothetical protein	S5MW25	Escherichia_phage	3.5e-63	99.2
WP_187292993.1\|1897757_1898324_+	hypothetical protein	S5MW25	Escherichia_phage	3.4e-80	85.3
WP_187292994.1\|1898280_1898733_+	hypothetical protein	S5MW25	Escherichia_phage	2.0e-70	94.2
WP_000078853.1\|1900637_1900778_+	type I toxin-antitoxin system Hok family toxin	S5M7Q0	Escherichia_phage	2.9e-17	95.7
WP_039264410.1\|1900922_1902635_+\|tail	prophage tail fiber N-terminal domain-containing protein	S5MDN9	Escherichia_phage	1.2e-67	51.0
WP_039264408.1\|1902644_1902857_+	hypothetical protein	NA	NA	NA	NA
WP_039264582.1\|1902868_1903543_+	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	4.3e-114	90.1
WP_022581964.1\|1903706_1904036_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_001058323.1\|1904690_1905809_+	hydrogenase 1 small subunit	NA	NA	NA	NA
1904175:1904236	attR	NA	NA	NA	NA
WP_039264411.1\|1905805_1907599_+	Ni/Fe-hydrogenase large subunit	NA	NA	NA	NA
WP_001186421.1\|1907617_1908325_+	Ni/Fe-hydrogenase b-type cytochrome subunit	NA	NA	NA	NA
WP_000003671.1\|1908321_1908909_+\|protease	hydrogenase 1 maturation protease	NA	NA	NA	NA

DBSCAN-SWA_6

2159305 : 2227954

Escherichia_phage(28.85%)

portal,protease,integrase,terminase,head,tail,holin,capsid

attL 2159142:2159166|attR 2214149:2214173

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2159142:2159166	attL	NA	NA	NA	NA
WP_028985500.1\|2159305_2160436_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21940	Phage_21	1.2e-103	51.4
WP_000113186.1\|2160413_2160662_-	excisionase	NA	NA	NA	NA
WP_028985499.1\|2160726_2163198_-	exonuclease	A0A192Y6E0	Salmonella_phage	2.0e-55	56.6
WP_000092839.1\|2163293_2163482_-	DUF1482 family protein	NA	NA	NA	NA
WP_000450222.1\|2163478_2163667_-	cell division inhibitor	NA	NA	NA	NA
WP_001365839.1\|2164451_2164820_-	hypothetical protein	NA	NA	NA	NA
WP_000380317.1\|2164831_2164984_-	DUF1391 family protein	M4QQ57	Salicola_phage	5.1e-07	53.2
WP_001003380.1\|2165173_2165581_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	5.5e-24	45.4
WP_000476991.1\|2165658_2165886_+	transcriptional regulator	NA	NA	NA	NA
WP_000705131.1\|2165869_2166391_+	hypothetical protein	NA	NA	NA	NA
WP_000054520.1\|2166371_2167337_+	hypothetical protein	U5P0A0	Shigella_phage	5.0e-55	61.2
WP_000790459.1\|2167343_2168084_+	ATP-binding protein	A0A088CBP4	Shigella_phage	6.2e-114	83.1
WP_000450858.1\|2168113_2168875_+	DUF1627 domain-containing protein	A0A088CE47	Shigella_phage	8.4e-74	64.0
WP_000215513.1\|2168934_2169129_+	hypothetical protein	NA	NA	NA	NA
WP_000211993.1\|2169470_2170022_+	ORF6N domain-containing protein	A0A0N7C203	Escherichia_phage	5.5e-43	53.3
WP_000882661.1\|2170236_2170449_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	5.6e-28	94.3
WP_000042395.1\|2170551_2170869_-	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_001452497.1\|2171457_2171685_+	hypothetical protein	NA	NA	NA	NA
WP_024199763.1\|2171738_2172008_+	hypothetical protein	I6PCV7	Cronobacter_phage	1.2e-11	52.5
WP_033817200.1\|2172009_2173059_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	2.9e-109	54.0
WP_000904136.1\|2173071_2173434_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.4e-34	61.9
WP_021293385.1\|2173426_2174092_+	antiterminator	I6PDF8	Cronobacter_phage	4.6e-60	51.6
WP_000342737.1\|2174345_2175059_+	hypothetical protein	NA	NA	NA	NA
WP_000917733.1\|2175232_2175430_+	hypothetical protein	S5MQK8	Escherichia_phage	6.8e-28	96.9
WP_032308170.1\|2175581_2176640_+	site-specific DNA-methyltransferase	S5MDR0	Escherichia_phage	4.0e-207	99.1
WP_000271631.1\|2177119_2177548_+	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_000382065.1\|2178244_2178970_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_039264423.1\|2180832_2182797_+	SASA family carbohydrate esterase	A0A0P0ZBH7	Stx2-converting_phage	2.0e-297	79.4
WP_000142780.1\|2182931_2183111_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	5.4e-24	93.2
WP_001290230.1\|2183151_2183397_+	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
WP_000284490.1\|2183474_2183690_+\|holin	class II holin family protein	Q9ZWW2	Enterobacteria_phage	2.0e-33	98.6
WP_039264424.1\|2183693_2184485_+	DUF1327 domain-containing protein	Q08JA0	Stx2-converting_phage	4.0e-34	86.7
WP_001092874.1\|2184996_2185530_+	lysozyme	Q6H9V6	Enterobacteria_phage	1.4e-99	95.5
WP_062896309.1\|2185686_2185869_+	hypothetical protein	NA	NA	NA	NA
WP_071974579.1\|2186237_2186444_+	hypothetical protein	H6WRZ6	Salmonella_phage	4.6e-11	63.2
WP_000735655.1\|2186508_2186733_+	hypothetical protein	NA	NA	NA	NA
WP_000828070.1\|2187077_2187404_+	TonB family protein	H6WZK5	Escherichia_phage	6.3e-55	98.1
WP_000095744.1\|2187535_2187736_-	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	1.3e-29	97.0
WP_000829192.1\|2187777_2188143_+	HNH endonuclease	B6ETE5	Enterobacteria_phage	1.6e-62	96.7
WP_000958387.1\|2188431_2188995_+\|terminase	terminase small subunit	A0A0N7KZJ8	Stx2-converting_phage	8.1e-90	100.0
WP_001373204.1\|2188991_2190653_+\|terminase	terminase large subunit	Q6H9U9	Enterobacteria_phage	0.0e+00	99.5
WP_000172990.1\|2190716_2192654_+\|capsid	phage major capsid protein	Q6H9U8	Enterobacteria_phage	0.0e+00	99.7
WP_001063099.1\|2192698_2192920_+	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_039264426.1\|2192865_2195451_+\|portal	phage portal protein	B6DZA1	Enterobacteria_phage	0.0e+00	96.2
WP_000126028.1\|2195447_2195774_+\|head,tail	phage gp6-like head-tail connector protein	B6ETF0	Enterobacteria_phage	3.9e-52	97.2
WP_001007902.1\|2195784_2196135_+\|head	phage head closure protein	A0A0P0ZCU6	Stx2-converting_phage	2.0e-59	99.1
WP_000573397.1\|2196131_2196578_+	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	2.0e-75	99.3
WP_000133383.1\|2196574_2196919_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	4.2e-57	99.1
WP_001275414.1\|2196985_2197702_+	immunoglobulin domain-containing protein	A0A0P0ZDV1	Stx2-converting_phage	1.5e-125	98.7
WP_000710936.1\|2197716_2198091_+\|tail	phage tail assembly chaperone	A0A0P0ZE84	Stx2-converting_phage	3.9e-64	98.4
WP_122993267.1\|2198186_2198396_+	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	98.6
WP_039264427.1\|2198444_2201687_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	89.5
WP_000343408.1\|2201679_2202021_+\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	7.6e-51	81.2
WP_000738904.1\|2202219_2203383_+	porin OmpC	Q1MVN1	Enterobacteria_phage	1.6e-140	66.9
WP_001365876.1\|2203593_2204292_+\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	1.4e-131	98.3
WP_039264428.1\|2204302_2205046_+\|tail	phage tail protein	S5MQI8	Escherichia_phage	3.8e-148	98.0
WP_137573430.1\|2204991_2205624_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	3.0e-101	91.4
WP_039264430.1\|2206533_2210220_+	DUF1983 domain-containing protein	S5MW25	Escherichia_phage	0.0e+00	87.9
WP_000078853.1\|2210418_2210559_+	type I toxin-antitoxin system Hok family toxin	S5M7Q0	Escherichia_phage	2.9e-17	95.7
WP_000290874.1\|2210703_2211972_+\|tail	prophage tail fiber N-terminal domain-containing protein	S5MDN9	Escherichia_phage	6.5e-55	99.1
WP_001049904.1\|2212040_2212712_+	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	9.6e-106	83.4
WP_000211405.1\|2213119_2213680_-	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	5.4e-54	69.8
WP_001079504.1\|2214326_2214833_-	ferritin-like domain-containing protein	NA	NA	NA	NA
2214149:2214173	attR	NA	NA	NA	NA
WP_001056491.1\|2214878_2215379_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000807651.1\|2215464_2215644_-	general stress protein	NA	NA	NA	NA
WP_000443056.1\|2216024_2216831_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_000209520.1\|2216830_2218024_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_000983912.1\|2218035_2219397_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	1.1e-36	40.2
WP_000763511.1\|2219397_2220993_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
WP_001194590.1\|2220992_2222555_-	anthranilate synthase component I	NA	NA	NA	NA
WP_001700591.1\|2222646_2222691_-	trp operon leader peptide	NA	NA	NA	NA
WP_001285673.1\|2222828_2223710_+	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001295575.1\|2223706_2224327_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001291216.1\|2224427_2225300_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_001278906.1\|2225339_2225930_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_000559281.1\|2225926_2226685_-	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	4.4e-06	24.5
WP_000422045.1\|2226904_2227954_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5

DBSCAN-SWA_7

2878799 : 2960723

101

Escherichia_phage(20.93%)

transposase,portal,integrase,terminase,holin,head,tail,plate,capsid

attL 2914247:2914306|attR 2960793:2960869

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062868572.1\|2878799_2880008_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SL42	Escherichia_phage	5.8e-210	94.0
WP_073520221.1\|2880030_2880690_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	9.6e-42	59.1
WP_000879833.1\|2881419_2882217_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000734031.1\|2882226_2882778_-	Raf kinase inhibitor-like protein YbcL	NA	NA	NA	NA
WP_001070440.1\|2882946_2883279_-	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA
WP_001274295.1\|2883612_2883927_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA
WP_032141871.1\|2884141_2885800_+	flagellar M-ring protein FliF	NA	NA	NA	NA
WP_000067950.1\|2885792_2886788_+	flagellar motor switch protein FliG	NA	NA	NA	NA
WP_001282706.1\|2886780_2887467_+	flagellar assembly protein FliH	NA	NA	NA	NA
WP_000213318.1\|2887466_2888840_+	flagellum-specific ATP synthase FliI	NA	NA	NA	NA
WP_000807584.1\|2888858_2889302_+	flagella biosynthesis chaperone FliJ	NA	NA	NA	NA
WP_000620097.1\|2889298_2890426_+	flagellar hook length control protein FliK	NA	NA	NA	NA
WP_000133106.1\|2890530_2890995_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA
WP_001295641.1\|2890999_2892004_+	flagellar motor switch protein FliM	NA	NA	NA	NA
WP_001282098.1\|2892000_2892414_+	flagellar motor switch protein FliN	NA	NA	NA	NA
WP_001299290.1\|2892416_2892782_+	flagellar type III secretion system protein FliO	NA	NA	NA	NA
WP_001253441.1\|2892781_2893519_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA
WP_000187358.1\|2893528_2893798_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA
WP_000983977.1\|2893806_2894592_+	flagellar type III secretion system protein FliR	NA	NA	NA	NA
WP_000103987.1\|2894881_2895505_+	transcriptional regulator RcsA	NA	NA	NA	NA
WP_000867217.1\|2895548_2895737_-	protein DsrB	NA	NA	NA	NA
WP_000844800.1\|2895899_2896127_+	peroxide/acid resistance protein YodD	NA	NA	NA	NA
WP_039264461.1\|2896424_2897240_+	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA
WP_001542934.1\|2897236_2898931_-	cellulose biosynthesis regulator YedQ	A0A127AWB9	Bacillus_phage	1.3e-18	35.6
WP_000009307.1\|2899101_2899284_-	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_000922682.1\|2899362_2900280_-	DUF808 domain-containing protein	NA	NA	NA	NA
WP_001212248.1\|2900452_2901373_+	drug/metabolite exporter YedA	NA	NA	NA	NA
WP_000786004.1\|2901361_2901832_-	VSPR family DNA mismatch endonuclease	E5E3X5	Burkholderia_phage	1.5e-33	47.6
WP_001157239.1\|2901812_2903231_-	DNA-cytosine methyltransferase	E5E3X6	Burkholderia_phage	3.0e-101	54.8
WP_039264462.1\|2903297_2903993_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.5e-08	28.5
WP_001313057.1\|2904032_2904398_-	hypothetical protein	NA	NA	NA	NA
WP_000824362.1\|2904964_2906038_+	porin	Q1MVN1	Enterobacteria_phage	6.2e-99	51.6
WP_000218214.1\|2906630_2907482_+	protein deglycase HchA	NA	NA	NA	NA
WP_000826768.1\|2907588_2908947_-	two-component system sensor histidine kinase HprS	Q8QKV7	Ectocarpus_siliculosus_virus	8.7e-05	20.5
WP_001362894.1\|2908946_2909618_-	response regulator transcription factor HprR	W8CYM9	Bacillus_phage	3.1e-32	35.6
WP_000920127.1\|2909750_2910164_+	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_000740094.1\|2910272_2911277_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
WP_001542937.1\|2911277_2911913_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
WP_001007749.1\|2912169_2912820_+	metal-binding protein ZinT	NA	NA	NA	NA
WP_001079074.1\|2913162_2913693_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	1.9e-56	100.0
2914247:2914306	attL	NA	NA	NA	NA
WP_000974855.1\|2914671_2915682_-\|tail	prophage tail fiber N-terminal domain-containing protein	NA	NA	NA	NA
WP_001287093.1\|2915687_2916731_-	phage late control protein	R9TNM7	Vibrio_phage	9.9e-33	28.7
WP_000634204.1\|2916734_2916947_-\|tail	tail protein X	NA	NA	NA	NA
WP_000418460.1\|2916963_2917206_+	superinfection immunity protein	M4MA40	Vibrio_phage	1.8e-06	46.9
WP_024184912.1\|2917184_2917574_-\|tail	phage tail protein	E5FFG4	Burkholderia_phage	1.5e-15	39.5
WP_012138675.1\|2917609_2919250_-	hypothetical protein	A0A2I7R3J9	Vibrio_phage	8.3e-18	27.9
WP_000444666.1\|2919358_2919640_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_039264464.1\|2919652_2920165_-\|tail	phage major tail tube protein	NA	NA	NA	NA
WP_039264465.1\|2920182_2921676_-\|tail	phage tail sheath subtilisin-like domain-containing protein	R9TMQ0	Vibrio_phage	3.8e-70	34.1
WP_001559300.1\|2921681_2921915_-	hypothetical protein	NA	NA	NA	NA
WP_039264466.1\|2922866_2923493_-\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	3.1e-26	39.5
WP_039264467.1\|2923495_2924416_-\|plate	baseplate J/gp47 family protein	D5LGZ3	Escherichia_phage	7.0e-67	47.4
WP_039264468.1\|2924412_2924754_-	GPW/gp25 family protein	D4HTV2	Vibrio_phage	5.3e-20	50.5
WP_039264469.1\|2924756_2925659_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_039264470.1\|2925639_2926176_-	hypothetical protein	NA	NA	NA	NA
WP_039264472.1\|2926172_2926853_-	hypothetical protein	NA	NA	NA	NA
WP_039264473.1\|2926884_2927265_-	hypothetical protein	NA	NA	NA	NA
WP_039264474.1\|2927261_2927669_-	DNA-packaging protein	NA	NA	NA	NA
WP_039264475.1\|2927699_2928734_-\|capsid	major capsid protein	A0A2I6TCE5	Escherichia_phage	9.2e-108	57.4
WP_000206291.1\|2928796_2929126_-\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	2.6e-08	39.5
WP_001145891.1\|2929125_2930436_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	5.8e-99	51.7
WP_028985357.1\|2930435_2932007_-\|portal	phage portal protein	E4WL21	Enterobacteria_phage	6.6e-190	63.5
WP_012565126.1\|2932003_2932237_-	hypothetical protein	NA	NA	NA	NA
WP_000148194.1\|2932233_2934099_-\|terminase	phage terminase large subunit family protein	A0A1I9KF19	Aeromonas_phage	4.1e-191	53.2
WP_000168116.1\|2934085_2934652_-	hypothetical protein	A0A1I9KFT4	Aeromonas_phage	7.7e-32	43.5
WP_001559319.1\|2935024_2935270_+	hypothetical protein	NA	NA	NA	NA
WP_039264476.1\|2935586_2935880_+	hypothetical protein	NA	NA	NA	NA
WP_071791986.1\|2935876_2936155_-	hypothetical protein	NA	NA	NA	NA
WP_000131874.1\|2936495_2936975_-	TIGR02594 family protein	A0A222YWL8	Escherichia_phage	1.6e-62	69.4
WP_039264477.1\|2936961_2937246_-\|holin	phage holin family protein	A0A0A0YPY6	Escherichia_phage	1.0e-08	42.9
WP_001294589.1\|2937245_2937629_-	hypothetical protein	NA	NA	NA	NA
WP_039264478.1\|2937741_2938413_-	antitermination protein	Q7Y3X2	Yersinia_phage	7.8e-15	32.4
WP_000717782.1\|2938412_2938706_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	5.0e-35	71.6
WP_039264479.1\|2938702_2939299_-	DUF1367 family protein	H9C173	Pectobacterium_phage	1.4e-71	64.6
WP_001025459.1\|2939375_2939555_-	hypothetical protein	NA	NA	NA	NA
WP_039264586.1\|2939706_2940348_-	hypothetical protein	NA	NA	NA	NA
WP_001559328.1\|2940466_2940745_-	hypothetical protein	NA	NA	NA	NA
WP_000224749.1\|2941312_2941801_+	ImmA/IrrE family metallo-endopeptidase	A0A142KB62	Gordonia_phage	6.4e-27	42.7
WP_039264480.1\|2941810_2942416_+	hypothetical protein	NA	NA	NA	NA
WP_052214780.1\|2942525_2942930_-	hypothetical protein	NA	NA	NA	NA
WP_039264481.1\|2943250_2943916_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_021560858.1\|2944120_2944318_-	hypothetical protein	NA	NA	NA	NA
WP_039264482.1\|2944944_2945868_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_039264483.1\|2946045_2946840_-	ORF6N domain-containing protein	A0A088CD42	Shigella_phage	2.8e-48	74.6
WP_039264484.1\|2947521_2947746_-	hypothetical protein	NA	NA	NA	NA
WP_000192614.1\|2947975_2948377_-	hypothetical protein	NA	NA	NA	NA
WP_039264485.1\|2949727_2951341_-\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.4e-181	63.2
WP_000624722.1\|2951371_2951722_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000422741.1\|2951718_2952144_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_039264486.1\|2952158_2952347_-	hypothetical protein	NA	NA	NA	NA
WP_039264487.1\|2952343_2953408_-	hypothetical protein	C8CGZ1	Staphylococcus_phage	7.7e-33	53.9
WP_000943913.1\|2953410_2953635_-	hypothetical protein	H9C163	Pectobacterium_phage	1.1e-18	56.8
WP_039264488.1\|2953674_2954151_-	hypothetical protein	H9C162	Pectobacterium_phage	5.5e-23	48.6
WP_028985347.1\|2954209_2954440_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	4.2e-21	61.8
WP_001296165.1\|2954538_2954952_+	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.7e-09	49.1
WP_028985346.1\|2955948_2956269_+	hypothetical protein	NA	NA	NA	NA
WP_028985345.1\|2956299_2958522_+	hypothetical protein	H9C157	Pectobacterium_phage	1.1e-92	35.4
WP_001559346.1\|2958518_2959088_+	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	3.6e-37	50.3
WP_000916333.1\|2959087_2959270_+	hypothetical protein	NA	NA	NA	NA
WP_039264489.1\|2959479_2959695_+	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	3.9e-21	66.2
WP_028985344.1\|2959694_2960723_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	5.6e-97	55.4
2960793:2960869	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3080439 : 3090553

Enterobacteria_phage(66.67%)

integrase,tail,lysis

attL 3072875:3072888|attR 3092590:3092603

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3072875:3072888	attL	NA	NA	NA	NA
WP_071885001.1\|3080439_3083790_-\|tail	prophage tail fiber N-terminal domain-containing protein	X2KTY7	Enterobacteria_phage	1.8e-11	35.5
WP_039264501.1\|3084932_3085115_+	hypothetical protein	NA	NA	NA	NA
WP_039264502.1\|3085213_3085588_-	hypothetical protein	M1FPD9	Enterobacteria_phage	4.6e-49	81.5
WP_039264503.1\|3085626_3086070_-\|lysis	lysis protein	M1FJ79	Enterobacteria_phage	2.4e-73	96.6
WP_024239663.1\|3087228_3087543_+	hypothetical protein	K7PLT4	Enterobacteria_phage	5.9e-50	99.0
WP_024215524.1\|3087559_3087841_+	hypothetical protein	K7P7M4	Enterobacteria_phage	3.3e-44	98.9
WP_039264504.1\|3087837_3088005_+	DUF2737 family protein	Q716F2	Shigella_phage	1.8e-21	92.7
WP_039264505.1\|3088135_3088834_+	DUF1311 domain-containing protein	J9Q6K3	Salmonella_phage	3.9e-102	83.2
WP_039264506.1\|3089283_3089502_+	excisionase	Q77WA4	Escherichia_phage	2.4e-34	98.6
WP_039264507.1\|3089479_3090553_+\|integrase	tyrosine-type recombinase/integrase	K7PHK0	Enterobacteria_phage	3.9e-194	96.6
3092590:3092603	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3145733 : 3154042

Enterobacteria_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001371026.1\|3145733_3147734_+	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.4
WP_001295429.1\|3147858_3148320_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_001295430.1\|3148360_3148831_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_000598641.1\|3148877_3149597_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295431.1\|3149593_3151279_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_001240401.1\|3151500_3152232_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
WP_001216961.1\|3152291_3152399_+	protein YohO	NA	NA	NA	NA
WP_000783120.1\|3152379_3153111_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_000569327.1\|3153115_3154042_-	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	2.8e-23	30.8

DBSCAN-SWA_10

3767821 : 3774961

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001272924.1\|3767821_3770383_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.7e-30	20.6
WP_001141330.1\|3770488_3771145_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	4.3e-50	46.7
WP_001297141.1\|3771195_3771963_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	3.3e-70	56.7
WP_000847985.1\|3772158_3773067_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
WP_000590392.1\|3773063_3774326_+	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
WP_001278994.1\|3774322_3774961_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009105

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009104

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection