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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP009106 Escherichia coli strain 94-3024 chromosome, complete genome 4 crisprs cas3,RT,DEDDh,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK 0 16 7 0
NZ_CP009107 Escherichia coli strain 94-3024 plasmid pO104_H21, complete sequence 0 crisprs NA 0 0 2 0

Results visualization

1. NZ_CP009106
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009106_1 622178-622327 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009106_2 840071-840186 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009106_3 3752833-3753532 TypeI-E I-E
11 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009106_4 3779235-3780117 Unclear I-E
14 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP009106_3 3.1|3752862|32|NZ_CP009106|CRT 3752862-3752893 32 LC542972 Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence 246937-246968 3 0.906
NZ_CP009106_4 4.4|3779447|32|NZ_CP009106|CRISPRCasFinder,CRT 3779447-3779478 32 NZ_CP017563 Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence 632328-632359 5 0.844
NZ_CP009106_3 3.2|3752923|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder 3752923-3752954 32 NZ_CP050442 Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence 41503-41534 6 0.812
NZ_CP009106_3 3.3|3752984|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder 3752984-3753015 32 CP000662 Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence 649166-649197 6 0.812
NZ_CP009106_3 3.1|3752862|32|NZ_CP009106|CRT 3752862-3752893 32 NZ_CP015038 Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence 112768-112799 7 0.781
NZ_CP009106_3 3.6|3753167|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder 3753167-3753198 32 NC_021529 Vibrio phage nt-1, complete genome 92167-92198 7 0.781
NZ_CP009106_3 3.10|3753411|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder 3753411-3753442 32 NZ_CP039912 Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625a, complete sequence 196290-196321 7 0.781
NZ_CP009106_4 4.1|3779264|32|NZ_CP009106|CRISPRCasFinder,CRT 3779264-3779295 32 KR080197 Mycobacterium phage FlagStaff, complete genome 15476-15507 7 0.781
NZ_CP009106_4 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT 3780057-3780088 32 MN692986 Marine virus AFVG_117M62, complete genome 52718-52749 7 0.781
NZ_CP009106_3 3.1|3752862|32|NZ_CP009106|CRT 3752862-3752893 32 NZ_AP014705 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence 1428097-1428128 8 0.75
NZ_CP009106_3 3.3|3752984|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder 3752984-3753015 32 MT889371 Microbacterium phage DelaGarza, complete genome 35549-35580 8 0.75
NZ_CP009106_3 3.5|3753106|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder 3753106-3753137 32 NZ_KX893538 Pseudomonas fluorescens strain PC20 plasmid pG20, complete sequence 92280-92311 8 0.75
NZ_CP009106_3 3.9|3753350|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder 3753350-3753381 32 NZ_CP023068 Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence 1022602-1022633 8 0.75
NZ_CP009106_4 4.1|3779264|32|NZ_CP009106|CRISPRCasFinder,CRT 3779264-3779295 32 NZ_CP014600 Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence 15418-15449 8 0.75
NZ_CP009106_4 4.4|3779447|32|NZ_CP009106|CRISPRCasFinder,CRT 3779447-3779478 32 NZ_CP029830 Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence 460575-460606 8 0.75
NZ_CP009106_4 4.7|3779630|32|NZ_CP009106|CRISPRCasFinder,CRT 3779630-3779661 32 MK416007 Klebsiella phage ST405-OXA48phi1.2, complete genome 5007-5038 8 0.75
NZ_CP009106_4 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT 3780057-3780088 32 NZ_CP016596 Bacillus cereus strain K8 plasmid pBCM301, complete sequence 135631-135662 8 0.75
NZ_CP009106_4 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT 3780057-3780088 32 NZ_CP020005 Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence 246101-246132 8 0.75
NZ_CP009106_4 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT 3780057-3780088 32 NZ_CP010112 Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence 307374-307405 8 0.75
NZ_CP009106_4 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT 3780057-3780088 32 CP046512 Bacillus cereus strain JHU plasmid p1, complete sequence 125012-125043 8 0.75
NZ_CP009106_4 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT 3780057-3780088 32 NZ_CP042875 Bacillus cereus strain 09 plasmid unnamed1, complete sequence 110197-110228 8 0.75
NZ_CP009106_4 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT 3780057-3780088 32 NZ_CP040345 Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence 338392-338423 8 0.75
NZ_CP009106_4 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT 3780057-3780088 32 NZ_CP009368 Bacillus cereus strain FM1 plasmid unnamed, complete sequence 203912-203943 8 0.75
NZ_CP009106_4 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT 3780057-3780088 32 NC_018501 Bacillus thuringiensis HD-771 plasmid p02, complete sequence 77857-77888 8 0.75
NZ_CP009106_4 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT 3780057-3780088 32 NZ_CP053657 Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence 20327-20358 8 0.75
NZ_CP009106_4 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT 3780057-3780088 32 MN693026 Marine virus AFVG_117M72, complete genome 51585-51616 8 0.75
NZ_CP009106_3 3.1|3752862|32|NZ_CP009106|CRT 3752862-3752893 32 NZ_CP017563 Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence 141278-141309 9 0.719
NZ_CP009106_3 3.3|3752984|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder 3752984-3753015 32 NZ_CP044425 Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence 203634-203665 9 0.719
NZ_CP009106_3 3.5|3753106|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder 3753106-3753137 32 CP027478 Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence 337384-337415 9 0.719
NZ_CP009106_3 3.5|3753106|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder 3753106-3753137 32 CP027479 Pseudomonas koreensis strain P19E3 plasmid p2, complete sequence 189914-189945 9 0.719
NZ_CP009106_3 3.6|3753167|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder 3753167-3753198 32 NZ_CP015355 Bacillus thuringiensis strain MYBT18246 plasmid p109822, complete sequence 26849-26880 9 0.719
NZ_CP009106_3 3.9|3753350|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder 3753350-3753381 32 MT932212 Salmonella phage VSe13, complete genome 11034-11065 9 0.719
NZ_CP009106_4 4.1|3779264|32|NZ_CP009106|CRISPRCasFinder,CRT 3779264-3779295 32 NZ_CP009292 Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence 139210-139241 9 0.719
NZ_CP009106_4 4.3|3779386|32|NZ_CP009106|CRISPRCasFinder,CRT 3779386-3779417 32 NZ_CP030074 Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence 224876-224907 9 0.719
NZ_CP009106_4 4.4|3779447|32|NZ_CP009106|CRISPRCasFinder,CRT 3779447-3779478 32 NZ_CP006988 Rhizobium sp. IE4771 plasmid pRetIE4771b, complete sequence 91348-91379 9 0.719
NZ_CP009106_4 4.6|3779569|32|NZ_CP009106|CRISPRCasFinder,CRT 3779569-3779600 32 NZ_CP036355 Bacillus sp. SYJ plasmid unnamed1, complete sequence 40503-40534 9 0.719
NZ_CP009106_4 4.6|3779569|32|NZ_CP009106|CRISPRCasFinder,CRT 3779569-3779600 32 NZ_CP053290 Bacillus cereus strain WPySW2 plasmid unnamed, complete sequence 150072-150103 9 0.719
NZ_CP009106_4 4.6|3779569|32|NZ_CP009106|CRISPRCasFinder,CRT 3779569-3779600 32 NZ_CP045534 Bacillaceae bacterium C02 plasmid unnamed1, complete sequence 2445-2476 9 0.719
NZ_CP009106_4 4.8|3779691|32|NZ_CP009106|CRISPRCasFinder,CRT 3779691-3779722 32 MN698241 Pelagibacter phage HTVC027P, complete genome 53788-53819 9 0.719
NZ_CP009106_4 4.11|3779874|32|NZ_CP009106|CRISPRCasFinder,CRT 3779874-3779905 32 NZ_CP045385 Ruegeria sp. THAF33 plasmid pTHAF33_a, complete sequence 162644-162675 9 0.719
NZ_CP009106_4 4.1|3779264|32|NZ_CP009106|CRISPRCasFinder,CRT 3779264-3779295 32 NZ_CP012383 Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence 14130-14161 10 0.688
NZ_CP009106_4 4.9|3779752|32|NZ_CP009106|CRISPRCasFinder,CRT 3779752-3779783 32 KX961629 Bacillus phage BJ4, complete genome 26667-26698 10 0.688
NZ_CP009106_4 4.9|3779752|32|NZ_CP009106|CRISPRCasFinder,CRT 3779752-3779783 32 MT584805 Bacillus phage Tomato, complete genome 30154-30185 10 0.688
NZ_CP009106_4 4.9|3779752|32|NZ_CP009106|CRISPRCasFinder,CRT 3779752-3779783 32 KX961632 Bacillus phage SBP8a, complete genome 27087-27118 10 0.688
NZ_CP009106_4 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT 3780057-3780088 32 MK448515 Streptococcus satellite phage Javan482, complete genome 7966-7997 10 0.688
NZ_CP009106_3 3.5|3753106|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder 3753106-3753137 32 NZ_AP014639 Leptolyngbya boryana IAM M-101 plasmid pLBA 74288-74319 11 0.656

1. spacer 3.1|3752862|32|NZ_CP009106|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 3, identity: 0.906

taagtgatatccatcatcgcatccagtgcgcc	CRISPR spacer
caagtgatgtccatcatcgcatccagtgcgtc	Protospacer
.*******.*********************.*

2. spacer 4.4|3779447|32|NZ_CP009106|CRISPRCasFinder,CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 5, identity: 0.844

gcccgcct-cgtcggtgtattccgcgagatcgc	CRISPR spacer
-ccggcctacgtcgacgtattccgcgagatcgt	Protospacer
 ** **** *****..****************.

3. spacer 3.2|3752923|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP050442 (Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

aaaaccaaacttctccataaattccatagccg	CRISPR spacer
attactaaacttctgcataaattccataggag	Protospacer
*  **.******** **************  *

4. spacer 3.3|3752984|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 6, identity: 0.812

acgcgcgtaccggatcgcggacaacaaattgc	CRISPR spacer
gcgggcgtaccgcatcgcggacaacaagctga	Protospacer
.** ******** **************..** 

5. spacer 3.1|3752862|32|NZ_CP009106|CRT matches to NZ_CP015038 (Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence) position: , mismatch: 7, identity: 0.781

taagtgat-atccatcatcgcatccagtgcgcc	CRISPR spacer
-ggttgatcgtccttcatcgcagccagtgcgcc	Protospacer
 .. **** .*** ******** **********

6. spacer 3.6|3753167|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder matches to NC_021529 (Vibrio phage nt-1, complete genome) position: , mismatch: 7, identity: 0.781

ggcaacataacgaacaaaatcaacgtcaacct	CRISPR spacer
gtcaacataatgagcaaaatcaacgtctctgt	Protospacer
* ********.**.*************  . *

7. spacer 3.10|3753411|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039912 (Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625a, complete sequence) position: , mismatch: 7, identity: 0.781

ggtccg-gtcaatttccggcatgaacagcggta	CRISPR spacer
-gtcagcgtcaatgtccgacatgaacagcgcat	Protospacer
 *** * ****** ****.***********   

8. spacer 4.1|3779264|32|NZ_CP009106|CRISPRCasFinder,CRT matches to KR080197 (Mycobacterium phage FlagStaff, complete genome) position: , mismatch: 7, identity: 0.781

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
aacccggcgaacggcatcgcggcgccggcgtc	Protospacer
*** . * .****** ******** *******

9. spacer 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT matches to MN692986 (Marine virus AFVG_117M62, complete genome) position: , mismatch: 7, identity: 0.781

---gcttcggtgcattcatctatttatctaaatcc	CRISPR spacer
caggatt---ttcattcatatatttaactaaatcc	Protospacer
   * **   * ******* ****** ********

10. spacer 3.1|3752862|32|NZ_CP009106|CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.75

taagtg---atatccatcatcgcatccagtgcgcc	CRISPR spacer
---gtgcgcccctccatcaccgcttccagtgcgcc	Protospacer
   ***    . *******.*** ***********

11. spacer 3.3|3752984|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder matches to MT889371 (Microbacterium phage DelaGarza, complete genome) position: , mismatch: 8, identity: 0.75

acgcgcgtaccggatcgcggacaacaaattgc	CRISPR spacer
gcgcgcctaccggatcgcggacaaccgcacgg	Protospacer
.***** ****************** .  .* 

12. spacer 3.5|3753106|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KX893538 (Pseudomonas fluorescens strain PC20 plasmid pG20, complete sequence) position: , mismatch: 8, identity: 0.75

gctggttttgaatcgtcccgcgctcgagacgc	CRISPR spacer
actggttttgaatcggccggcgctgtaatcgt	Protospacer
.************** ** *****  *. **.

13. spacer 3.9|3753350|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 8, identity: 0.75

ctatagcgccacgttccgagcgctgcgagctg	CRISPR spacer
ttgtggaaccacggtccgagcgctgcgatctc	Protospacer
.*.*.* .***** ************** ** 

14. spacer 4.1|3779264|32|NZ_CP009106|CRISPRCasFinder,CRT matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
ggctgtggaaagggctgcgcggcggcggcgac	Protospacer
..*  .***** **** ************* *

15. spacer 4.4|3779447|32|NZ_CP009106|CRISPRCasFinder,CRT matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gcccgcctcgtcggtgtattccgcgagatcgc	CRISPR spacer
cgtcgcctcgtcggcgtattccgccagcaggc	Protospacer
  .***********.********* **   **

16. spacer 4.7|3779630|32|NZ_CP009106|CRISPRCasFinder,CRT matches to MK416007 (Klebsiella phage ST405-OXA48phi1.2, complete genome) position: , mismatch: 8, identity: 0.75

actgtcatctctctcccactgggagatagaaa	CRISPR spacer
ggtttcatccctttcccactgggagatcgtga	Protospacer
. * *****.**.************** * .*

17. spacer 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT matches to NZ_CP016596 (Bacillus cereus strain K8 plasmid pBCM301, complete sequence) position: , mismatch: 8, identity: 0.75

----gcttcggtgcattcatctatttatctaaatcc	CRISPR spacer
aagagc----gtgttttcatctatttatctaaacac	Protospacer
    **    ***. ******************. *

18. spacer 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT matches to NZ_CP020005 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

----gcttcggtgcattcatctatttatctaaatcc	CRISPR spacer
aagagc----gtgttttcatctatttatctaaacac	Protospacer
    **    ***. ******************. *

19. spacer 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT matches to NZ_CP010112 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence) position: , mismatch: 8, identity: 0.75

----gcttcggtgcattcatctatttatctaaatcc	CRISPR spacer
aagagc----gtgttttcatctatttatctaaacac	Protospacer
    **    ***. ******************. *

20. spacer 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT matches to CP046512 (Bacillus cereus strain JHU plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

----gcttcggtgcattcatctatttatctaaatcc	CRISPR spacer
aagagc----gtgttttcatctatttatctaaacac	Protospacer
    **    ***. ******************. *

21. spacer 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT matches to NZ_CP042875 (Bacillus cereus strain 09 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

----gcttcggtgcattcatctatttatctaaatcc	CRISPR spacer
aagagc----gtgttttcatctatttatctaaacac	Protospacer
    **    ***. ******************. *

22. spacer 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

----gcttcggtgcattcatctatttatctaaatcc	CRISPR spacer
aagagc----gtgttttcatctatttatctaaacac	Protospacer
    **    ***. ******************. *

23. spacer 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT matches to NZ_CP009368 (Bacillus cereus strain FM1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

----gcttcggtgcattcatctatttatctaaatcc	CRISPR spacer
aagagc----gtgttttcatctatttatctaaacac	Protospacer
    **    ***. ******************. *

24. spacer 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT matches to NC_018501 (Bacillus thuringiensis HD-771 plasmid p02, complete sequence) position: , mismatch: 8, identity: 0.75

----gcttcggtgcattcatctatttatctaaatcc	CRISPR spacer
aagagc----gtgttttcatctatttatctaaacac	Protospacer
    **    ***. ******************. *

25. spacer 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 8, identity: 0.75

----gcttcggtgcattcatctatttatctaaatcc	CRISPR spacer
aagagc----gtgttttcatctatttatctaaacac	Protospacer
    **    ***. ******************. *

26. spacer 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT matches to MN693026 (Marine virus AFVG_117M72, complete genome) position: , mismatch: 8, identity: 0.75

gcttcgg---tgcattcatctatttatctaaatcc	CRISPR spacer
---ctggattttcattcatatatttaactaaatcc	Protospacer
   ..**   * ******* ****** ********

27. spacer 3.1|3752862|32|NZ_CP009106|CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 9, identity: 0.719

taagtgatatccatcatcgcatccagtgcgcc	CRISPR spacer
ctcatcgcatccatcatcggttccagtgcgcc	Protospacer
.  .* ..***********  ***********

28. spacer 3.3|3752984|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 9, identity: 0.719

acgcgcgtaccggatcgcggacaacaaattgc------	CRISPR spacer
tcgcgcggaccggatcgcggccaa------gccccgcg	Protospacer
 ****** ************ ***      **      

29. spacer 3.5|3753106|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder matches to CP027478 (Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

gctggttttgaatcgtcccgcgctcgagacgc	CRISPR spacer
actggttttgaatcggccggcgctgtgatcgt	Protospacer
.************** ** *****  .. **.

30. spacer 3.5|3753106|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder matches to CP027479 (Pseudomonas koreensis strain P19E3 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

gctggttttgaatcgtcccgcgctcgagacgc	CRISPR spacer
actggttttgaatcggccggcgctgtgatcgt	Protospacer
.************** ** *****  .. **.

31. spacer 3.6|3753167|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015355 (Bacillus thuringiensis strain MYBT18246 plasmid p109822, complete sequence) position: , mismatch: 9, identity: 0.719

ggcaacataacgaacaaaatcaacgtcaacct	CRISPR spacer
tgcaacagaaccaacaaaatcaacattatatc	Protospacer
 ****** *** ************.*.*  ..

32. spacer 3.9|3753350|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder matches to MT932212 (Salmonella phage VSe13, complete genome) position: , mismatch: 9, identity: 0.719

ctatagcgccacgttccgagcgctgcgagctg	CRISPR spacer
cgatagcgccgcgttctgagcgctgatgtttt	Protospacer
* ********.*****.********  . .* 

33. spacer 4.1|3779264|32|NZ_CP009106|CRISPRCasFinder,CRT matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 9, identity: 0.719

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
cccgggaaaaacgggttcgcggcggcggcttc	Protospacer
  *.  ..****** ************** **

34. spacer 4.3|3779386|32|NZ_CP009106|CRISPRCasFinder,CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ggcatagccaggctgatccggcgacggcctta	CRISPR spacer
gcagcagaccggctgatccggcgacggccccg	Protospacer
*  ..** * *******************...

35. spacer 4.4|3779447|32|NZ_CP009106|CRISPRCasFinder,CRT matches to NZ_CP006988 (Rhizobium sp. IE4771 plasmid pRetIE4771b, complete sequence) position: , mismatch: 9, identity: 0.719

gcccgcctcgtcggtgtattccgcgagatcgc	CRISPR spacer
taccgcctcgtcgatgtaatccgcgacgtgcg	Protospacer
  ***********.**** ******* .*   

36. spacer 4.6|3779569|32|NZ_CP009106|CRISPRCasFinder,CRT matches to NZ_CP036355 (Bacillus sp. SYJ plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ggattgcaggcatcaggtgatatcgccaaaac	CRISPR spacer
attttatgggcatcaggtgctatcgccacaaa	Protospacer
.  **...*********** ******** ** 

37. spacer 4.6|3779569|32|NZ_CP009106|CRISPRCasFinder,CRT matches to NZ_CP053290 (Bacillus cereus strain WPySW2 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ggattgcaggcatcaggtgatatcgccaaaac	CRISPR spacer
attttatgggcatcaggtgctatcgccacaaa	Protospacer
.  **...*********** ******** ** 

38. spacer 4.6|3779569|32|NZ_CP009106|CRISPRCasFinder,CRT matches to NZ_CP045534 (Bacillaceae bacterium C02 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ggattgcaggcatcaggtgatatcgccaaaac	CRISPR spacer
attttatgggcatcaggtgctatcgccacaaa	Protospacer
.  **...*********** ******** ** 

39. spacer 4.8|3779691|32|NZ_CP009106|CRISPRCasFinder,CRT matches to MN698241 (Pelagibacter phage HTVC027P, complete genome) position: , mismatch: 9, identity: 0.719

gaaactctctgagaatccgtcagcaaaaatac	CRISPR spacer
accactctctgataatccatcagcaatagctc	Protospacer
.  ********* *****.******* *.. *

40. spacer 4.11|3779874|32|NZ_CP009106|CRISPRCasFinder,CRT matches to NZ_CP045385 (Ruegeria sp. THAF33 plasmid pTHAF33_a, complete sequence) position: , mismatch: 9, identity: 0.719

tcggtgcaaacgaaaaccggaacgtatcagaa	CRISPR spacer
gacgcccgaacgaaaaccggaccgtttcagac	Protospacer
   *. *.************* *** ***** 

41. spacer 4.1|3779264|32|NZ_CP009106|CRISPRCasFinder,CRT matches to NZ_CP012383 (Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence) position: , mismatch: 10, identity: 0.688

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
gaggacggaagcggcttcgccgcggcgggcaa	Protospacer
.* . *****.********* *******    

42. spacer 4.9|3779752|32|NZ_CP009106|CRISPRCasFinder,CRT matches to KX961629 (Bacillus phage BJ4, complete genome) position: , mismatch: 10, identity: 0.688

cccttgaatgcgttcaaaaggttatcaacaca	CRISPR spacer
tcagacaatgcttttaaaaggttatcaacttc	Protospacer
.*    ***** **.************** . 

43. spacer 4.9|3779752|32|NZ_CP009106|CRISPRCasFinder,CRT matches to MT584805 (Bacillus phage Tomato, complete genome) position: , mismatch: 10, identity: 0.688

cccttgaatgcgttcaaaaggttatcaacaca	CRISPR spacer
tcagacaatgcttttaaaaggttatcaacttc	Protospacer
.*    ***** **.************** . 

44. spacer 4.9|3779752|32|NZ_CP009106|CRISPRCasFinder,CRT matches to KX961632 (Bacillus phage SBP8a, complete genome) position: , mismatch: 10, identity: 0.688

cccttgaatgcgttcaaaaggttatcaacaca	CRISPR spacer
tcagacaatgcttttaaaaggttatcaacttc	Protospacer
.*    ***** **.************** . 

45. spacer 4.14|3780057|32|NZ_CP009106|CRISPRCasFinder,CRT matches to MK448515 (Streptococcus satellite phage Javan482, complete genome) position: , mismatch: 10, identity: 0.688

gcttcggtgcattcatctatttatctaaatcc	CRISPR spacer
caagaggttcattcatcaatttatctaagcgc	Protospacer
     *** ******** **********.. *

46. spacer 3.5|3753106|32|NZ_CP009106|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP014639 (Leptolyngbya boryana IAM M-101 plasmid pLBA) position: , mismatch: 11, identity: 0.656

gctggttttgaatcgtcccgcgctcgagacgc	CRISPR spacer
caatgttttgactcgccccgcgctcgaagaag	Protospacer
    ******* ***.***********.. . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1297767 : 1370493 74 Enterobacteria_phage(36.11%) tRNA,integrase,transposase,terminase,tail,protease,lysis attL 1333791:1333837|attR 1361967:1362013
DBSCAN-SWA_2 1969253 : 1983502 23 uncultured_Caudovirales_phage(92.31%) portal,integrase,capsid,terminase,head,tail,protease attL 1969175:1969189|attR 1970531:1970545
DBSCAN-SWA_3 2093001 : 2160408 74 Stx2-converting_phage(28.57%) holin,integrase,capsid,terminase,head,tail,protease attL 2092838:2092865|attR 2146603:2146630
DBSCAN-SWA_4 3001094 : 3111422 112 Enterobacteria_phage(42.65%) holin,tRNA,portal,integrase,capsid,terminase,head,tail,lysis attL 3018899:3018958|attR 3027789:3027870
DBSCAN-SWA_5 3311028 : 3356526 54 Enterobacteria_phage(86.05%) holin,tRNA,portal,plate,integrase,capsid,terminase,head,tail attL 3314034:3314053|attR 3350586:3350605
DBSCAN-SWA_6 3651739 : 3659503 6 Escherichia_phage(66.67%) integrase,transposase attL 3649527:3649540|attR 3656640:3656653
DBSCAN-SWA_7 3729398 : 3736538 6 Escherichia_phage(83.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP009107
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 59307 : 114314 50 Enterobacteria_phage(15.38%) protease,transposase,integrase attL 73924:73983|attR 125516:126022
DBSCAN-SWA_2 118560 : 131991 10 Acinetobacter_phage(22.22%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage