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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP009268 Clostridium pasteurianum DSM 525 = ATCC 6013 strain DSM 525 chromosome, complete genome 3 crisprs csa3,RT,c2c9_V-U4,cas3,DinG,cas2,cas1,cas4,cas5,cas7b,cas8b1,WYL,DEDDh 0 4 9 0

Results visualization

1. NZ_CP009268
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009268_1 699979-700538 Orphan III-B
8 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009268_2 2831919-2834380 TypeI-B III-B
37 spacers
cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009268_3 2991738-2991839 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP009268_2 2.14|2832802|36|NZ_CP009268|PILER-CR,CRISPRCasFinder,CRT 2832802-2832837 36 NZ_CP020426 Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence 35128-35163 2 0.944
NZ_CP009268_2 2.14|2832802|36|NZ_CP009268|PILER-CR,CRISPRCasFinder,CRT 2832802-2832837 36 CP011970 Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence 86837-86872 2 0.944
NZ_CP009268_2 2.14|2832802|36|NZ_CP009268|PILER-CR,CRISPRCasFinder,CRT 2832802-2832837 36 LN681537 Clostridium phage phiCD211, complete genome 95699-95734 2 0.944
NZ_CP009268_1 1.15|700404|34|NZ_CP009268|CRISPRCasFinder,CRT 700404-700437 34 MN693625 Marine virus AFVG_250M334, complete genome 21803-21836 7 0.794
NZ_CP009268_2 2.14|2832802|36|NZ_CP009268|PILER-CR,CRISPRCasFinder,CRT 2832802-2832837 36 NZ_CP040345 Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence 58184-58219 7 0.806
NZ_CP009268_2 2.14|2832802|36|NZ_CP009268|PILER-CR,CRISPRCasFinder,CRT 2832802-2832837 36 NZ_CP040345 Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence 69182-69217 7 0.806
NZ_CP009268_2 2.14|2832802|36|NZ_CP009268|PILER-CR,CRISPRCasFinder,CRT 2832802-2832837 36 NZ_CP040345 Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence 209310-209345 7 0.806
NZ_CP009268_2 2.14|2832802|36|NZ_CP009268|PILER-CR,CRISPRCasFinder,CRT 2832802-2832837 36 NZ_CP040345 Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence 216497-216532 7 0.806
NZ_CP009268_1 1.7|700403|35|NZ_CP009268|PILER-CR 700403-700437 35 MN693625 Marine virus AFVG_250M334, complete genome 21803-21837 8 0.771
NZ_CP009268_2 2.26|2833591|36|NZ_CP009268|PILER-CR,CRISPRCasFinder,CRT 2833591-2833626 36 NC_010371 Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence 52485-52520 8 0.778

1. spacer 2.14|2832802|36|NZ_CP009268|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020426 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.944

acatatgagtatggtctttatcacattctattgcaa	CRISPR spacer
acatatgtgtatggtctttatcgcattctattgcaa	Protospacer
******* **************.*************

2. spacer 2.14|2832802|36|NZ_CP009268|PILER-CR,CRISPRCasFinder,CRT matches to CP011970 (Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence) position: , mismatch: 2, identity: 0.944

acatatgagtatggtctttatcacattctattgcaa	CRISPR spacer
acatatgtgtatggtctttatcgcattctattgcaa	Protospacer
******* **************.*************

3. spacer 2.14|2832802|36|NZ_CP009268|PILER-CR,CRISPRCasFinder,CRT matches to LN681537 (Clostridium phage phiCD211, complete genome) position: , mismatch: 2, identity: 0.944

acatatgagtatggtctttatcacattctattgcaa	CRISPR spacer
acatatgtgtatggtctttatcgcattctattgcaa	Protospacer
******* **************.*************

4. spacer 1.15|700404|34|NZ_CP009268|CRISPRCasFinder,CRT matches to MN693625 (Marine virus AFVG_250M334, complete genome) position: , mismatch: 7, identity: 0.794

acagcagttgcaaataatgcaactg-ctacagtac	CRISPR spacer
acagcagttgcaaatactgcacctgattctaata-	Protospacer
**************** **** *** .* .*.** 

5. spacer 2.14|2832802|36|NZ_CP009268|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.806

acatatgagtatggtctttatcacattctattgcaa	CRISPR spacer
acaagtggacatggtctttgtcacattccattgcaa	Protospacer
*** .**...*********.********.*******

6. spacer 2.14|2832802|36|NZ_CP009268|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.806

acatatgagtatggtctttatcacattctattgcaa	CRISPR spacer
acaagtggacatggtctttgtcacattccattgcaa	Protospacer
*** .**...*********.********.*******

7. spacer 2.14|2832802|36|NZ_CP009268|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.806

acatatgagtatggtctttatcacattctattgcaa	CRISPR spacer
acaagtggacatggtctttgtcacattccattgcaa	Protospacer
*** .**...*********.********.*******

8. spacer 2.14|2832802|36|NZ_CP009268|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.806

acatatgagtatggtctttatcacattctattgcaa	CRISPR spacer
acaagtggacatggtctttgtcacattccattgcaa	Protospacer
*** .**...*********.********.*******

9. spacer 1.7|700403|35|NZ_CP009268|PILER-CR matches to MN693625 (Marine virus AFVG_250M334, complete genome) position: , mismatch: 8, identity: 0.771

tacagcagttgcaaataatgcaactg-ctacagtac	CRISPR spacer
gacagcagttgcaaatactgcacctgattctaata-	Protospacer
 **************** **** *** .* .*.** 

10. spacer 2.26|2833591|36|NZ_CP009268|PILER-CR,CRISPRCasFinder,CRT matches to NC_010371 (Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence) position: , mismatch: 8, identity: 0.778

tattctttaaaatgtcttttgtgtttaatacattat	CRISPR spacer
tttttattaaaatgtgatttgtgtttaatacacttg	Protospacer
* **. *********  ***************.*  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 201573 : 272279 56 Pandoravirus(22.22%) transposase,protease,tRNA,coat NA
DBSCAN-SWA_2 2061123 : 2069448 8 uncultured_Mediterranean_phage(42.86%) NA NA
DBSCAN-SWA_3 2085265 : 2135147 42 Paenibacillus_phage(22.22%) bacteriocin,transposase,protease,coat,integrase,tRNA attL 2113377:2113392|attR 2116548:2116563
DBSCAN-SWA_4 2552198 : 2609099 59 Bacillus_phage(23.81%) portal,tail,transposase,head,terminase,integrase,tRNA,capsid attL 2598426:2598445|attR 2611758:2611777
DBSCAN-SWA_5 2646735 : 2661108 10 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 2843854 : 2901867 49 Bacillus_phage(21.43%) transposase,tRNA,protease NA
DBSCAN-SWA_7 3682971 : 3785301 102 Clostridium_phage(47.37%) portal,tail,transposase,protease,head,terminase,integrase,tRNA,capsid attL 3731790:3731849|attR 3768454:3768529
DBSCAN-SWA_8 4024668 : 4081958 56 Streptococcus_phage(18.75%) holin,tRNA,transposase,coat NA
DBSCAN-SWA_9 4268821 : 4325166 59 Clostridium_phage(81.08%) holin,transposase,protease,terminase,integrase attL 4288049:4288066|attR 4334481:4334498
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage