CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP010363	Enterobacter hormaechei subsp. xiangfangensis strain 34978 plasmid p34978-139.941kb, complete sequence	0 crisprs	NA	0	2
NZ_CP010365	Enterobacter hormaechei subsp. xiangfangensis strain 34978 plasmid p34978-70.092kb, complete sequence	0 crisprs	NA	0	0
NZ_CP010364	Enterobacter hormaechei subsp. xiangfangensis strain 34978 plasmid p34978-4.938kb, complete sequence	0 crisprs	NA	0	0
NZ_CP010366	Enterobacter hormaechei subsp. xiangfangensis strain 34978 plasmid p34978-13.828kb, complete sequence	0 crisprs	NA	0	0
NZ_CP012166	Enterobacter hormaechei subsp. xiangfangensis strain 34978 plasmid p34978-2.725kb, complete sequence	0 crisprs	NA	0	0
NZ_CP010367	Enterobacter hormaechei subsp. xiangfangensis strain 34978 plasmid p34978-5.413kb, complete sequence	0 crisprs	NA	0	0
NZ_CP012165	Enterobacter hormaechei subsp. xiangfangensis strain 34978 chromosome, complete genome	5 crisprs	csa3,DEDDh,WYL,DinG,cas3,RT	2	9

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

15525 : 58048

Escherichia_phage(16.67%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022644915.1\|15525_16479_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	1.4e-62	49.4
WP_022644914.1\|16586_17174_-	recombinase family protein	A0A219Y912	Aeromonas_phage	2.6e-22	36.5
WP_022644913.1\|17713_18232_+	hypothetical protein	NA	NA	NA	NA
WP_022644912.1\|18561_19209_+	AAA family ATPase	A0A222YXS3	Escherichia_phage	9.7e-39	43.5
WP_032072061.1\|19199_19475_+	hypothetical protein	NA	NA	NA	NA
WP_022644911.1\|19675_19876_-	hypothetical protein	NA	NA	NA	NA
WP_022644910.1\|19977_21249_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	7.3e-147	60.5
WP_044596206.1\|21260_21710_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	5.2e-31	52.0
WP_022644908.1\|21706_21952_-	DinI-like family protein	Q7Y3V9	Yersinia_phage	1.5e-08	39.3
WP_022644907.1\|22155_22386_+	hypothetical protein	NA	NA	NA	NA
WP_022644906.1\|22821_23754_+	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_004194746.1\|23788_24022_+	hypothetical protein	NA	NA	NA	NA
WP_022644905.1\|24018_24354_+	hypothetical protein	NA	NA	NA	NA
WP_004152355.1\|24739_25441_+	DNA methylase	A0A2I7RE86	Vibrio_phage	7.1e-27	36.7
WP_022644904.1\|25440_25662_+	hypothetical protein	NA	NA	NA	NA
WP_022644903.1\|25671_26091_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_032072058.1\|26144_26912_+	hypothetical protein	NA	NA	NA	NA
WP_022644901.1\|27592_28021_+	antirestriction protein	NA	NA	NA	NA
WP_022644900.1\|28065_28572_+	antirestriction protein ArdA	G9FHQ1	Rhodococcus_virus	6.9e-08	31.9
WP_022644899.1\|28614_28806_+	hypothetical protein	NA	NA	NA	NA
WP_025404029.1\|28999_29254_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.6e-11	50.7
WP_022644897.1\|29289_29610_+	hypothetical protein	NA	NA	NA	NA
WP_022644896.1\|30284_30827_+	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	1.7e-49	74.4
WP_022644895.1\|30875_31124_+	DUF905 domain-containing protein	NA	NA	NA	NA
WP_022644894.1\|31192_33193_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	3.2e-24	26.5
WP_015632482.1\|33237_33669_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_022644893.1\|33665_34394_+	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_015632484.1\|34390_34717_+	hypothetical protein	NA	NA	NA	NA
WP_087439983.1\|34905_36280_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.4e-79	74.1
WP_022644891.1\|36450_37491_+	ATP-binding protein	M4QMW8	Micromonas_pusilla_virus	9.5e-20	35.2
WP_162859354.1\|37696_39979_+	S8 family peptidase	NA	NA	NA	NA
WP_015065592.1\|40412_41945_-\|transposase	IS3-like element ISKpn38 family transposase	A0A1B1P773	Bacillus_phage	3.1e-51	39.8
WP_004196353.1\|42033_43374_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_032072095.1\|43629_44052_-	nickel resistance OB fold protein NcrY	NA	NA	NA	NA
WP_004196366.1\|44213_45344_-	Ni(II)/Co(II) efflux transporter permease subunit NcrC	NA	NA	NA	NA
WP_004196355.1\|45356_45626_-	nickel-sensing transcriptional repressor NcrB	NA	NA	NA	NA
WP_004196314.1\|45731_47030_-	MFS transporter	NA	NA	NA	NA
WP_004196325.1\|47263_48022_-	hypothetical protein	NA	NA	NA	NA
WP_004196315.1\|48075_48996_-	hypothetical protein	NA	NA	NA	NA
WP_004196359.1\|49058_49430_-	hypothetical protein	NA	NA	NA	NA
WP_004152397.1\|50341_51661_+\|transposase	IS1182-like element ISKpn6 family transposase	Q9MBP7	Staphylococcus_prophage	1.9e-12	24.2
WP_004152396.1\|51910_52792_-	carbapenem-hydrolyzing class A beta-lactamase KPC-3	A0A1B0VBP7	Salmonella_phage	2.8e-73	52.2
WP_004152394.1\|53110_53890_-	IS21-like element ISKpn7 family helper ATPase IstB	A0A2L1IVB6	Escherichia_phage	2.5e-89	61.8
WP_004199214.1\|53886_54912_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-87	50.3
WP_004152392.1\|55018_58048_-\|transposase	Tn3-like element Tn4401 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

69558 : 105274

Escherichia_phage(22.73%)

integrase,transposase

attL 68075:68090|attR 105072:105087

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
68075:68090	attL	NA	NA	NA	NA
WP_000427619.1\|69558_70563_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_001067855.1\|72459_73164_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_025404032.1\|73199_73505_+	IncN plasmid KikA protein	NA	NA	NA	NA
WP_001452736.1\|73540_73852_+	hypothetical protein	NA	NA	NA	NA
WP_064577928.1\|74060_74549_+	restriction endonuclease	NA	NA	NA	NA
WP_001749967.1\|74553_74760_+	hypothetical protein	NA	NA	NA	NA
WP_072094655.1\|75171_76575_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	9.0e-106	50.6
WP_004098817.1\|76608_77823_-	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
WP_001389365.1\|78083_78848_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001144737.1\|78990_79257_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_004201280.1\|79477_79951_-	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	8.4e-16	28.9
WP_001067855.1\|80926_81631_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001348075.1\|81677_81914_-	AAA family ATPase	NA	NA	NA	NA
WP_001044770.1\|81987_82404_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_001261282.1\|82400_82631_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_032072060.1\|83175_83496_+	hypothetical protein	NA	NA	NA	NA
WP_022644887.1\|83544_84183_+	hypothetical protein	NA	NA	NA	NA
WP_022644886.1\|84185_84971_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.9e-52	92.0
WP_032408936.1\|85028_85286_-	hypothetical protein	NA	NA	NA	NA
WP_032072094.1\|85414_85528_-	hypothetical protein	NA	NA	NA	NA
WP_012539983.1\|86158_86914_+	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	1.7e-135	95.2
WP_022644883.1\|87001_88540_-\|transposase	IS66-like element ISKpn24 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.6e-281	94.7
WP_000612626.1\|88588_88936_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_007372134.1\|88932_89337_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.6e-68	97.8
WP_015632469.1\|90118_91324_+	AAA family ATPase	A0A077SL49	Escherichia_phage	4.0e-163	69.6
WP_022644882.1\|91323_92298_+	ParB/RepB/Spo0J family partition protein	A0A1B0V750	Salmonella_phage	9.4e-86	55.0
WP_022644881.1\|92379_93651_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	1.6e-149	63.5
WP_020805749.1\|93650_94082_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.6e-29	53.3
WP_001568038.1\|94314_95286_+	hypothetical protein	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
WP_022644880.1\|95288_95960_+	plasmid partitioning/stability family protein	NA	NA	NA	NA
WP_001568040.1\|96021_96252_+	hypothetical protein	NA	NA	NA	NA
WP_004152355.1\|96688_97390_+	DNA methylase	A0A2I7RE86	Vibrio_phage	7.1e-27	36.7
WP_001568042.1\|97389_97611_+	hypothetical protein	NA	NA	NA	NA
WP_039264790.1\|97620_98040_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_022644878.1\|98093_98861_+	hypothetical protein	NA	NA	NA	NA
WP_022644877.1\|99541_99970_+	antirestriction protein	A9J566	Pseudomonas_phage	2.2e-10	31.9
WP_013214014.1\|100012_100519_+	antirestriction protein ArdA	G9FHQ1	Rhodococcus_virus	1.2e-07	31.4
WP_001568047.1\|100561_100753_+	hypothetical protein	NA	NA	NA	NA
WP_022644876.1\|100940_101204_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.4e-12	50.0
WP_022644875.1\|101228_101549_+	hypothetical protein	NA	NA	NA	NA
WP_020314935.1\|102349_102907_+	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	1.8e-49	72.4
WP_020314938.1\|102956_103205_+	DUF905 domain-containing protein	NA	NA	NA	NA
WP_020314932.1\|103273_105274_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	3.3e-21	28.4
105072:105087	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP012165

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012165_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012165_1

406289-406383

Orphan

Consensus_repeat	Method
GAGCGCTGTTGCCAGTGGCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012165_1

>merge|NZ_CP012165|1|406289-406383|CRISPRCasFinder
GAGCGCTGTTGCCAGTGGCAACACTGACTAAAAAGTAAGCACTGTTGCCAGTGGCAACACTGGCTAAAAAGCGAGCACTGTTGCCAGTGGCAACA

>NZ_CP012165|1|1|406289-406383|CRISPRCasFinder
GAGCGCTGTTGCCAGTGGCAACA	CTGACTAAAAAGTAAGCACTGTTGCCAGTGGCAACACTGGCTAAAAAGC
GAGCACTGTTGCCAGTGGCAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012165.1\|WP_032608275.1\|404977_406216_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379352
NZ_CP012165.1\|WP_032608279.1\|407270_407825_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012165.1\|WP_016807974.1\|413865_414336_+\|DUF3577-domain-containing-protein	unknown	unknown	gnl\|CDD\|371899
NZ_CP012165.1\|WP_016807972.1\|414997_415240_+\|DUF4160-domain-containing-protein	unknown	unknown	gnl\|CDD\|379344
NZ_CP012165.1\|WP_032608281.1\|410190_411480_-\|ISL3-like-element-ISPpu12-family-transposase	unknown	unknown	gnl\|CDD\|376574
NZ_CP012165.1\|WP_032608268.1\|398554_399175_-\|DUF2238-domain-containing-protein	unknown	unknown	gnl\|CDD\|182124
NZ_CP012165.1\|WP_016807973.1\|414396_414933_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|236362
NZ_CP012165.1\|WP_032608271.1\|401632_403333_+\|ParB-family-protein	unknown	unknown	gnl\|CDD\|213858
NZ_CP012165.1\|WP_032608272.1\|403325_404036_+\|DUF2786-domain-containing-protein	unknown	unknown	gnl\|CDD\|378525
NZ_CP012165.1\|WP_032608280.1\|407840_409850_+\|DNA-topoisomerase-III	unknown	unknown	gnl\|CDD\|236078
NZ_CP012165.1\|WP_032608267.1\|392043_392997_-\|nickel/cobalt-transporter	unknown	unknown	gnl\|CDD\|225125
NZ_CP012165.1\|WP_032608270.1\|400265_401636_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NZ_CP012165.1\|WP_004364974.1\|412017_412914_-\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
NZ_CP012165.1\|WP_004115572.1\|404629_404878_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012165.1\|WP_032608282.1\|411501_412014_-\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|173237
NZ_CP012165.1\|WP_032608269.1\|399397_400273_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP012165.1\|WP_003860199.1\|390508_392011_+\|glycine-betaine/L-proline-transporter-ProP	unknown	unknown	gnl\|CDD\|182611
NZ_CP012165.1\|WP_006777722.1\|404042_404633_+\|DUF2857-domain-containing-protein	unknown	unknown	gnl\|CDD\|378591
NZ_CP012165.1\|WP_029396360.1\|413009_413417_+\|Cd(II)/Pb(II)-responsive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|131102
NZ_CP012165.1\|WP_032608277.1\|406543_407269_+\|TIGR03761-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|378089

Protein	Function_ID	Function_description	E-value
NZ_CP012165.1\|WP_032608275.1\|404977_406216_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	4.50695e-05
NZ_CP012165.1\|WP_032608282.1\|411501_412014_-\|signal-peptidase-II	gnl\|CDD\|173237	PRK14776, PRK14776, lipoprotein signal peptidase; Provisional.	1.44856e-113
NZ_CP012165.1\|WP_016807974.1\|413865_414336_+\|DUF3577-domain-containing-protein	gnl\|CDD\|371899	pfam12101, DUF3577, Protein of unknown function (DUF3577). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.	1.79959e-78
NZ_CP012165.1\|WP_032608281.1\|410190_411480_-\|ISL3-like-element-ISPpu12-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	5.68137e-75
NZ_CP012165.1\|WP_032608268.1\|398554_399175_-\|DUF2238-domain-containing-protein	gnl\|CDD\|182124	PRK09867, PRK09867, hypothetical protein; Provisional.	1.87934e-129
NZ_CP012165.1\|WP_016807973.1\|414396_414933_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	1.04176e-91
NZ_CP012165.1\|WP_032608271.1\|401632_403333_+\|ParB-family-protein	gnl\|CDD\|213858	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.	4.09357e-150
NZ_CP012165.1\|WP_032608280.1\|407840_409850_+\|DNA-topoisomerase-III	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	0
NZ_CP012165.1\|WP_032608267.1\|392043_392997_-\|nickel/cobalt-transporter	gnl\|CDD\|225125	COG2215, COG2215, ABC-type uncharacterized transport system, permease component [General function prediction only].	1.05336e-52
NZ_CP012165.1\|WP_032608270.1\|400265_401636_+\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP012165.1\|WP_004364974.1\|412017_412914_-\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	9.84117e-31
NZ_CP012165.1\|WP_032608272.1\|403325_404036_+\|DUF2786-domain-containing-protein	gnl\|CDD\|378525	pfam10979, DUF2786, Protein of unknown function (DUF2786). This family of proteins has no known function.	2.00067e-09
NZ_CP012165.1\|WP_016807972.1\|414997_415240_+\|DUF4160-domain-containing-protein	gnl\|CDD\|379344	pfam13711, DUF4160, Domain of unknown function (DUF4160).	4.19872e-16
NZ_CP012165.1\|WP_032608269.1\|399397_400273_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	7.2494e-23
NZ_CP012165.1\|WP_003860199.1\|390508_392011_+\|glycine-betaine/L-proline-transporter-ProP	gnl\|CDD\|182611	PRK10642, PRK10642, proline/glycine betaine transporter ProP.	0
NZ_CP012165.1\|WP_006777722.1\|404042_404633_+\|DUF2857-domain-containing-protein	gnl\|CDD\|378591	pfam11198, DUF2857, Protein of unknown function (DUF2857). This is a bacterial family of uncharacterized proteins.	1.79678e-77
NZ_CP012165.1\|WP_029396360.1\|413009_413417_+\|Cd(II)/Pb(II)-responsive-transcriptional-regulator	gnl\|CDD\|131102	TIGR02047, putative_regulatory_protein, Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix. [Regulatory functions, DNA interactions].	1.80574e-70
NZ_CP012165.1\|WP_032608277.1\|406543_407269_+\|TIGR03761-family-integrating-conjugative-element-protein	gnl\|CDD\|378089	pfam08900, DUF1845, Domain of unknown function (DUF1845). This family of proteins are functionally uncharacterized.	2.77076e-102

>NZ_CP012165.1|WP_032608275.1|404977_406216_+|helix-turn-helix-domain-containing-protein
MSLPAESLIAYTLDKMNARLAASPRRDDGRIRNGLLFTGNVHDSIPRRLLLDTRLSPLDKMGWMMIRLYAQNNEGAVFPSYDELQLQLASPGKGNASRETVSRVLLMLRITGWLSLCKRVRDDKGRVRGNIYAQHDEPLTFSDAEMLDPRFLDTVADACLSKNRTISQTAREVLDDIKNDPTMRHYRSHLALIESRLDRPQTPSQMAKHHHRIPCPAPGSETELSHKRPGIVAKKQGSDTELSPERYNNSLSSESVLPVKTGSYGRVRKPNHYVRSITHSVNKNTYVPGKPVLPDSLHELVPAEDIAMLTAQLQALPEEQAQLVLLSLQKVMARQQLSNPVGWLLAVMKKAREGRLYAPRQGGDISDSVGQKTVQRPEQQRWKPEPRASARPVSEENIRDLVKKIREKIINS
>NZ_CP012165.1|WP_004115572.1|404629_404878_+|hypothetical-protein
MKYRMVAPGLRAPHGTPPQCCQKALRQVRRFRQGARNYTRLDEKGCGYYKIDLGPFWRLLSRNEGRTWLLLSHERYNSAIRK
>NZ_CP012165.1|WP_006777722.1|404042_404633_+|DUF2857-domain-containing-protein
MMNSLSQAANGLLMQLVMDLRSGYLRRCESLGLNREEMQMLQGLSLEELHYLSGSEVSIISVGINHGNLVRMLQQARTEQKRLQRIDRALALGGSIELMANYFGLSSTDVAARRRIAGIDVRPGRGNALGDEENAALWRQWQKSGVEDAESADGLDVMMLAAEQMNVSLTSVWHAVRGWHKTRQPSPARTPVRKTA
>NZ_CP012165.1|WP_032608272.1|403325_404036_+|DUF2786-domain-containing-protein
MNNSQRQLRLLNLVRKLLKLGRSNSNAHEAGLALQRAQKLMARYGISELDAGLTSVREASSRTAPSDAEKVPEWMVTLVRGVCHAFGCQAYYSWRQTSAGYRRSVTFYGFSEKPEIAAYAFDVLTRQLKDATNSYLKTQSKRLKLATRRARAEQFRNGWVCGVREVISATDISSEEQQVMSHWLESRSMKTVTTRELKACRGADTARYQGYEAGQNARLHQGVSGRGPAAIGYRQD
>NZ_CP012165.1|WP_032608271.1|401632_403333_+|ParB-family-protein
MSRKSSNVGAAMLQPGRQSQAAGNISVMPAAEMPMVLTLDQLSPNPDNPRTSRNPRYDDIKASIRSRGLDTVPKVTRDPDGEPDMYIFSDGGNTRYQILSELWQETGEDRFFRVHVLFKPWPGRLQCVIGHLAENEVRGELSFIEKAQGIHKARSIYEEQMGKTVSLRQLSELLTHEGLPVHYSTVSRMEDALKYLYPWIPDLLESGLGRPQITSLLALRHDAERVWDEFCLISDTGDKSFSDVFGQCCGRFNSPELWSLEMFRDEFIGDLLQALPHPELDYDRWMMELDPKERNRRHHFGEPETVAFPAANKPVNADHALHTTGSDESEGVPLPVSSSRPEVSGGAVTPVPGNASSPSETPINEPPRHEVQPDMYGAAPVISGESGDVSGLVTLSNGYGEENGGEEDNGEDGLLSLLTPEPEVVLQDDAPVTNDSIWHVPAHQDDIEHLQNTAFRLAWELGEVLGCEDEILPQRDKDTSAGYVGAGEVCSEAAAFLLGLTGEAPVLHPAAGVCGLPELFTGGPGEGEAPVLTDEDALKLLRLMRVMRRLRELQRGLKYGEDNSDE
>NZ_CP012165.1|WP_032608270.1|400265_401636_+|replicative-DNA-helicase
MSEMMMPCSYEAEQAVLGGLMLDNDRWDEVILQISPEDLFSRPHRMVFRVMAELAGEGLPLDLITITERLENRGDLEQCGGFAYLAEMSKNTPSAANILAYAGVVAEKSRLRQLMTVGNSLLSDVQAPKASSAGILESAEGKLFNIAEQGAMQLNSETGVNEALDKLLTQLESMSASDGLTGTPTGFSELDAMTCGLQPGDLALLAARPSMGKTSLAMAACTAAVSAKPDDNVFVFSLEMPSEQLMMRLLAMEGRVELSRLRSGNMDDEDWARVSEATGRIIEWKNRLIIDDTSYQTPATLRARARRYVRKYGRPSLIMLDYLQLVRSPEQENRTQEIAEISRSLKALGKELGCPVLALSQLNRLVEQRADKRPNNGDLRDSGALEQDADLIMFIYRDEVYNPGTPDAGVAEIIVGKQRQGPTGTVKVKFDGRYTLFSEFQEGSYDFGYRSGRKQA
>NZ_CP012165.1|WP_032608269.1|399397_400273_+|ParA-family-protein
MKILPVISPKGGEGKSTFAAYLAGFLADAGLNTLLVDADYSQPTASSIFALEHESPFGLYELLMQMVSDHTQCISQTAIKNLDVIYSNDPDELLPTAMLHAADGRLRLRNILQHSFFNRYDVIIVDSKGATGVMTELSLLSSTGNVMGVVKPILPDVREFIRGSLHMLTRLKTYENYGIRLPDISILVNCIENTLLDREAMDGLAAIINEKHYDASALGNRDVYRLLDTRIEALDIFKLGHVKQQPVHRLEYKTRRKGPAAAVTMHDLASELFPEWQSHFSDVLTREVRHV
>NZ_CP012165.1|WP_032608268.1|398554_399175_-|DUF2238-domain-containing-protein
MTLSALKAGSLLLLMILFYTGLFTSDRVTWLMEVTPVIIIIPLLLATHRRYPLTPLLYTLVFFHAIILMVGGMYTYAKVPVGFEVQEMLGLSRNPYDKLGHFFQGLVPALAAREILLRGGYVRGHKMTGFLVCCVALAISATYELIEWWAALAMGQGADDFLGTQGDPWDTQSDMFCALLGALTTVLILGRFHQRQLRRLNVDSAL
>NZ_CP012165.1|WP_032608267.1|392043_392997_-|nickel/cobalt-transporter
MTTQRLQRDWRLPTAGLAVLVLLMAGFALHEHWNAFIQWCLATQITLHRYLVMYLLQLNNHQYSGGLWLLTGAFLYGVLHAVGPGHGKFIVTTYLTTNKESQLAARVVPFIGSLMQGVSAIAFVFILAVGLNLASGDISTSRWYVEKISALLIAAFGAFIIYQALSSLRPRKMAISAIKPLHQHNEHCGCGHHGVGVDLAKSDWKTRLGVVLAIGARPCSGAIMILMFSNALGIISWGIAAVMTMSLGTALSIMGLSLAVRYARERTVAWFGGGTSLNWIMPMVKIAGGVVLILFATVLFLTVIPVSAGGDYIAAGC
>NZ_CP012165.1|WP_003860199.1|390508_392011_+|glycine-betaine/L-proline-transporter-ProP
MLRRKKVKPITLRDVTIIDDAKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSLQMIAALGTFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLICKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVMGAGVVVLISTVVGEENFLDWGWRIPFFLALPLGIIGLYLRHALEETPAFQQHVEKLEQGDREGLQDGPKVSFKEIATKHWRSLLTCIGLVISTNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMVGMLFVQPIMGLLSDRFGRKPFIILGSVALFALAIPAFILINSNVLGLIFAGLLMLAVILNCFIGVMASTLPAMFPTHIRYSALAAAFNISVLIAGLTPTLAASLVESTQNLMMPAYYLMVIAVVGLITGITMKETANRPLKGATPAASDIQEAKEILREHYDNVEQKIEDIDAEIEALQKKRSRLVDQHPRINE
>NZ_CP012165.1|WP_032608277.1|406543_407269_+|TIGR03761-family-integrating-conjugative-element-protein
MSDGKTKGGTTASRAGALQSSVNILLHTHYAIRLWEGRKRDAPDETGVKKKRPEIISMPQAIARAGNASRDSAADNPYADMALVRLEEALQRATLKINENVSSLDARLSAVPKGVTLSEVESADPLNISVFSRSPLGYRCVWLLVGYDQLAMKAFQAFHYGLISRSQRDTILDNGGHAVRQVYGVIQPYRTLAVTRRDIAEKTTQGLVAIERNGEPDPDVLSGKKRSSFSPPLKNNIAEEE
>NZ_CP012165.1|WP_032608279.1|407270_407825_+|hypothetical-protein
MIRPVFLLTSFFLLSGCATTDWAAINKQVSDTAANLTKTLGGNSSGESGGMPLMSPAGQQAMKSVDKTFSVPVDVDTAAARLKRHYKFISTQELEALRQAANDGDWKAAAEDDAHPVWDAMPGSYYKMGSDWNERDHLDIEIEKNGSGSRLYVVYRSSSSQRLAGSGVTKLMNDVRAVAAGEKR
>NZ_CP012165.1|WP_032608280.1|407840_409850_+|DNA-topoisomerase-III
MQLFLCEKPSQAKDIARVLGISKREQGFISGGNIVVTWAVGHLLETASPEAYGEQYGRPWRADVLPVLPETWEMVVKEQTKSQFTVISKLLKKASEVVIATDADREGEVIARELLEYCRYSGAVRRLWLSALDEASVKEALGNILPGEKTALLYDAGKGRSQADWLIGMNLTRLYTLKARDSGVSEVLSVGRVQTPTLAMVVNRDNEITSFVPKPWWQVHALIEKEGVRFRAGWVPVEQYCDEEKRCINPQAARAVGQLCQQQGRAAVLEVTQKREKTAAPLCFDLGTLQQVCSRKFGMGANDVLAIAQSLYETHKATTYPRTDCGFLPTSMQQEISDVLAAVAKSDPAVAPVLNQLDRQFVSRVWNDKKITAHHAIIPTRQAFDLSRLSADELKVYQLIRQHYFAQFLPLQESDVTEASFNIGGQLFRTRGKVGVVTGWKSLFQAEKDDDEEDVDGDSMALPALAKGDICAVTGSEVKDMKTSPPKPFTEGTLIAAMKNAASFVSDPKLKKVLRDNAGLGTEATRAAVLETLFKRHYLEKKGKHIHSTQMARELIAALPETLTSPGMTALWEQALDDISQGKMSLAVFMQKQLQWTRHLVEKGRQDSVKITAPVTPPCPLCKGPTRKRKGKNGDFWGCIRYPDCEGIISTGKKKAAKRKKTSVKAKTE
>NZ_CP012165.1|WP_032608281.1|410190_411480_-|ISL3-like-element-ISPpu12-family-transposase
MTELPDNILHLPQYQVLGCKSTDDEMHFQVDMPDPIACEECGVQGEFVRFGKRDVPYRDLPIHGKRVTLWVVRRRYTCRACKTTFRPQLPEMVDGFRMTLRLHEYVEKESFNHPYTFVAAQTGLDEKTVRDIFNARAEFLGRWHRFETPRILGIDELYLNKRYRCILTNIEERTLLDLLATRRQDVVTNYLMKLKDRQKVEIVSMDMWNPYRAAVKAVLPQARIVVDKFHVVRMANDAPERVRKGLRKELKPSQSRTLKGDRKILLKRAHEVPDRERLIMETWTGAFPQLLAAYEHKERFYGIWDATTRLQAEAALDEWIATIPKGQKEVWSDLVRAVGNWREETMTYFETDMPVTNAYTESINRLAKDKNREGRGYSFEVMRARMLYTTKHKKKAPTAKVSPFYKKTIGYGLPDFAEELNYGVDLSTI
>NZ_CP012165.1|WP_032608282.1|411501_412014_-|signal-peptidase-II
MLIIGKKLSPYALLSISGLLAASDQAVKWLVQQSMAYGEYVSVTPFFNWVHLWNTGAAFSLFANGGGWQRYFFIGIAVVISIFLIKLILENRHKGEAIAYSLILGGAMGNLIDRVFRGYVVDSFDFYWRDWHWPAFNLADIAIVLGALLFVSSSLLGKKANTNAESDGSD
>NZ_CP012165.1|WP_004364974.1|412017_412914_-|cation-transporter
MSKSCGGACGGDATSAADTDIQASSEAPGRWVSVYAVPKMDCPSEERMIRLALNGFEEIRALSFDLSNRRLKVVHDGEVEPVTSKLKTLGLGASLQETVAANPETIKAAEFSAASAKQESGTLRWLLGINALLFVVEMTAGLIARSTGLIGESLDNFADAAVYGLALYAVGHSVKMQVRAAHLAGVLQLILAVGVLVEVVRRFVFGSEPESLVMMAIAFVALIANTSCLLLISKHREGGAHMKASWIFSANDVVINLGVITAGALVAWTGSNYPDLIIGTIAGGIVLNGARRILALKG
>NZ_CP012165.1|WP_029396360.1|413009_413417_+|Cd(II)/Pb(II)-responsive-transcriptional-regulator
MRIGQLAQLVGVETQTIRFYEQQGLLPPPDRQDNGYRVYTEKHGEGLAFIRRCRILGLSLAEIHELQSYQDAPHQPCTAVNALLDDHISHVRSQITALQALEKQLVSLRASCNDDREVEACGVLAGISEGNMHQQ
>NZ_CP012165.1|WP_016807974.1|413865_414336_+|DUF3577-domain-containing-protein
MSANNTSASAKSEYFNLTIKGIGYLSNIRQVNHQNGSFLSCVINALSGPTDNPAYVRFDISVAGKEATSLIARCQKAVDEDKKVLLGFNLSNPSTDIFTLNKGEHAGEQRVSLKARLIKVDWIKIGQDMVYKTEKSDSVPPQNGSAAQQNYAENSF
>NZ_CP012165.1|WP_016807973.1|414396_414933_+|single-stranded-DNA-binding-protein
MSSRGVNKVILVGNLGQDPEVRYIPNGSAVATLSLATSESWRDKQSGEQKEVTEWHRVVIFGKLAEIAGEYLRKGSQVYIEGQLRTRKWTDQSGQEKYITEVVVNIGGTMQMLGGRQSGSGQNTSSRNDWGQPQQPSGPTHSGQASGSSAGAPPMDFDDDIPFIGFGYGVPKSAIHAL
>NZ_CP012165.1|WP_016807972.1|414997_415240_+|DUF4160-domain-containing-protein
MPVILRINGFRFFFYSNEGNPLEPAHIHVMKAGSEAKFWLTPSVALASNDGFNSRVLKELTGIVEDNQALFLEAWNDYFS

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Crispr_ID: NZ_CP012165_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012165_2

1403075-1403189

Orphan

Consensus_repeat	Method
GCCCTCACCCCGGCCCTCTCCCACAGGGAGAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012165_2

>merge|NZ_CP012165|2|1403075-1403189|CRISPRCasFinder
GCCCTCACCCCGGCCCTCTCCCACAGGGAGAGGGAGCAAACACTAAAAACGGCAACGGGGTTGCCGTTTTGCTTTTACCTCGCCCTCAACCCGGCCCTCTCCCACAGGGAGAGGG

>NZ_CP012165|2|2|1403075-1403189|CRISPRCasFinder
GCCCTCACCCCGGCCCTCTCCCACAGGGAGAGGG	AGCAAACACTAAAAACGGCAACGGGGTTGCCGTTTTGCTTTTACCTC
GCCCTCAACCCGGCCCTCTCCCACAGGGAGAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012165.1\|WP_032608824.1\|1416299_1417475_+\|isochorismate-synthase-EntC	unknown	unknown	gnl\|CDD\|184977
NZ_CP012165.1\|WP_032608809.1\|1398522_1398807_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225495
NZ_CP012165.1\|WP_022647369.1\|1400735_1401584_+\|iron/manganese-ABC-transporter-permease-subunit-SitC	unknown	unknown	gnl\|CDD\|334323
NZ_CP012165.1\|WP_039264669.1\|1395961_1397995_+\|choline-BCCT-transporter-BetT	unknown	unknown	gnl\|CDD\|236635
NZ_CP012165.1\|WP_003858827.1\|1395245_1395833_-\|transcriptional-regulator-BetI	unknown	unknown	gnl\|CDD\|179115
NZ_CP012165.1\|WP_032608813.1\|1402355_1403045_-\|enterobactin-synthase-subunit-EntD	unknown	unknown	gnl\|CDD\|182334
NZ_CP012165.1\|WP_032608817.1\|1405593_1406793_+\|enterochelin-esterase	unknown	unknown	gnl\|CDD\|236695
NZ_CP012165.1\|WP_003858806.1\|1406803_1407016_+\|MbtH-family-NRPS-accessory-protein	unknown	unknown	gnl\|CDD\|225790
NZ_CP012165.1\|WP_032608820.1\|1412744_1413749_-\|Fe(3+)-siderophore-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182464
NZ_CP012165.1\|WP_022650559.1\|1399932_1400739_+\|iron/manganese-ABC-transporter-ATP-binding-protein-SitB	unknown	unknown	gnl\|CDD\|185016
NZ_CP012165.1\|WP_032608819.1\|1410958_1411759_-\|iron-enterobactin-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182336
NZ_CP012165.1\|WP_032608821.1\|1413857_1415105_+\|enterobactin-transporter-EntS	unknown	unknown	gnl\|CDD\|236700
NZ_CP012165.1\|WP_032608811.1\|1399018_1399930_+\|iron/manganese-ABC-transporter-substrate-binding-protein-SitA	unknown	unknown	gnl\|CDD\|238557
NZ_CP012165.1\|WP_026080545.1\|1411755_1412745_-\|iron-enterobactin-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182463
NZ_CP012165.1\|WP_032608815.1\|1403206_1405447_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|237410
NZ_CP012165.1\|WP_032608818.1\|1407012_1410870_+\|enterobactin-non-ribosomal-peptide-synthetase-EntF	unknown	unknown	gnl\|CDD\|236668
NZ_CP012165.1\|WP_032608822.1\|1415151_1416111_-\|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|236806
NZ_CP012165.1\|WP_003858815.1\|1401580_1402420_+\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NZ_CP012165.1\|WP_032610190.1\|1398133_1398520_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368831
NZ_CP012165.1\|WP_022650555.1\|1393759_1395232_-\|betaine-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|183918

Protein	Function_ID	Function_description	E-value
NZ_CP012165.1\|WP_032608824.1\|1416299_1417475_+\|isochorismate-synthase-EntC	gnl\|CDD\|184977	PRK15016, PRK15016, isochorismate synthase EntC; Provisional.	0
NZ_CP012165.1\|WP_032608809.1\|1398522_1398807_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225495	COG2944, COG2944, Predicted transcriptional regulator [Transcription].	3.67146e-14
NZ_CP012165.1\|WP_022647369.1\|1400735_1401584_+\|iron/manganese-ABC-transporter-permease-subunit-SitC	gnl\|CDD\|334323	pfam00950, ABC-3, ABC 3 transport family.	6.83391e-81
NZ_CP012165.1\|WP_039264669.1\|1395961_1397995_+\|choline-BCCT-transporter-BetT	gnl\|CDD\|236635	PRK09928, PRK09928, choline transport protein BetT; Provisional.	0
NZ_CP012165.1\|WP_003858827.1\|1395245_1395833_-\|transcriptional-regulator-BetI	gnl\|CDD\|179115	PRK00767, PRK00767, transcriptional regulator BetI; Validated.	3.33362e-117
NZ_CP012165.1\|WP_032608813.1\|1402355_1403045_-\|enterobactin-synthase-subunit-EntD	gnl\|CDD\|182334	PRK10251, PRK10251, enterobactin synthase subunit EntD.	3.02128e-70
NZ_CP012165.1\|WP_032608817.1\|1405593_1406793_+\|enterochelin-esterase	gnl\|CDD\|236695	PRK10439, PRK10439, enterobactin/ferric enterobactin esterase; Provisional.	0
NZ_CP012165.1\|WP_003858806.1\|1406803_1407016_+\|MbtH-family-NRPS-accessory-protein	gnl\|CDD\|225790	COG3251, COG3251, Uncharacterized protein conserved in bacteria [Function unknown].	6.57585e-27
NZ_CP012165.1\|WP_032608820.1\|1412744_1413749_-\|Fe(3+)-siderophore-ABC-transporter-permease	gnl\|CDD\|182464	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease.	1.36742e-175
NZ_CP012165.1\|WP_022650559.1\|1399932_1400739_+\|iron/manganese-ABC-transporter-ATP-binding-protein-SitB	gnl\|CDD\|185016	PRK15056, PRK15056, manganese/iron ABC transporter ATP-binding protein.	0
NZ_CP012165.1\|WP_032608819.1\|1410958_1411759_-\|iron-enterobactin-ABC-transporter-ATP-binding-protein	gnl\|CDD\|182336	PRK10253, PRK10253, iron-enterobactin ABC transporter ATP-binding protein.	0
NZ_CP012165.1\|WP_032608821.1\|1413857_1415105_+\|enterobactin-transporter-EntS	gnl\|CDD\|236700	PRK10489, PRK10489, enterobactin transporter EntS.	0
NZ_CP012165.1\|WP_032608811.1\|1399018_1399930_+\|iron/manganese-ABC-transporter-substrate-binding-protein-SitA	gnl\|CDD\|238557	cd01137, PsaA, Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).	4.17063e-149
NZ_CP012165.1\|WP_026080545.1\|1411755_1412745_-\|iron-enterobactin-ABC-transporter-permease	gnl\|CDD\|182463	PRK10440, PRK10440, iron-enterobactin ABC transporter permease.	0
NZ_CP012165.1\|WP_032608815.1\|1403206_1405447_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|237410	PRK13524, PRK13524, FepA family TonB-dependent siderophore receptor.	0
NZ_CP012165.1\|WP_032608818.1\|1407012_1410870_+\|enterobactin-non-ribosomal-peptide-synthetase-EntF	gnl\|CDD\|236668	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF.	0
NZ_CP012165.1\|WP_032608822.1\|1415151_1416111_-\|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein	gnl\|CDD\|236806	PRK10957, PRK10957, iron-enterobactin transporter periplasmic binding protein; Provisional.	0
NZ_CP012165.1\|WP_003858815.1\|1401580_1402420_+\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	2.24762e-72
NZ_CP012165.1\|WP_032610190.1\|1398133_1398520_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368831	pfam06296, RelE, RelE toxin of RelE / RelB toxin-antitoxin system. RelE is a family of Gram-negative bacterial antitoxins of the RelE/RelB toxin-antitoxin system. Its cognate antitoxin is family RelB, pfam04221.	4.31615e-06
NZ_CP012165.1\|WP_022650555.1\|1393759_1395232_-\|betaine-aldehyde-dehydrogenase	gnl\|CDD\|183918	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.	0

>NZ_CP012165.1|WP_032608813.1|1402355_1403045_-|enterobactin-synthase-subunit-EntD
MHTTHSTFSLAGHTLHRITFDPTTFTDADLLWLPHHAQLANAGRKRKADHLAGRIAAAHALPDHTVPAIGPSGEPLWPQGISGSITHSGTQAIAVVTQYPALIGIDCETILSENEAREIKDGIIDTQEEPVLSRMGYPFALALTLVFSAKESLFKALFPQVQAWMGFDCARVTKLDDKTLTLALTRQLAGFEEGTAFPLHWQQHGEQVITLLSHAPGDEPSRWSPQTSR
>NZ_CP012165.1|WP_003858815.1|1401580_1402420_+|metal-ABC-transporter-permease
MMTLLLEPFQFAFMNNALLISLLVAVPCALLSVFLVLKGWALMGDAMSHAVFPGVVLAWMMGLPLALGAFVAGLFCAVATGYLKDNSRIKQDTVMGIVFSGMFGAGLILYIAVKPEVHLDHILFGDMLGINGMDILQSGLVAGMIALVIGLKWRDFLLFCFDYQQAQASGLRTRWLHYGLLCMVSLTIVATLKAVGIILSISLLIAPGAVAVLITRRFHMALLVAVAVSALVSVSGVYASFYLDSAPAPTIVVLFAMVFIVTFVVTSVKARRQERVTAE
>NZ_CP012165.1|WP_022647369.1|1400735_1401584_+|iron/manganese-ABC-transporter-permease-subunit-SitC
MNALLEPFGYEYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFSLGAFLSGGLAAGSMLFLNQRSRLKEDAIIGLIFSSFFGLGLFMVSLNPTSVNIQTIVLGNILAIAPEDIVQLAIIGVVSIVILLFKWKDLMVTFFDENHARAIGLRPERLKILFFTLLAVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFPRLLMIAVAIGSITSFLGAWASYYLDGATGGIIVVAQTLLFLLAFVFAPKHGLLASRRRAREAHP
>NZ_CP012165.1|WP_022650559.1|1399932_1400739_+|iron/manganese-ABC-transporter-ATP-binding-protein-SitB
MQKGIVVTDVTVTYRNGHTALRDASFSVPGGSIAALVGVNGSGKSTLFKAVMGFVRAASGTISILGLPPHRALRQNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGFLRRPKECDKQIVTDALKRVDMLELRHRQIGELSGGQKKRVFLARAIAQQGEVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTDITFTAENLERAFSGVLRHVVLSGSEDRIITDDERPFVAHRQEAK
>NZ_CP012165.1|WP_032608811.1|1399018_1399930_+|iron/manganese-ABC-transporter-substrate-binding-protein-SitA
MHPRQGLKRLLLGALLMTATTTGALAAEKFQVITTFTVIADMAKNVAGDAAEVTSITKPGAEIHEYQPTPGDIKRAQKAQLILANGMNLELWFQRFYQHLNGVPEVIVTKGITPMGISEGPYNGKPNPHAWMSPDNALIYVDNIRDALVKYDPANAQTYQRNADAYKQKITATLEPLRKQVAEIPEDKRWMVTSEGAFSYQARDLGLKELYLWPINADQQGTPQQVRKVIDLVKKHHIPAVFSESTVSDKPARQVARETGAHYGGVLYVDSLSAENGPVPTYIDLLNVTTRTLVQGIRDGMKE
>NZ_CP012165.1|WP_032608809.1|1398522_1398807_+|helix-turn-helix-domain-containing-protein
MSIFNELKSSLEEAVQIHNGRKAASRVTRYEVADVRAIREQLNITQSEMAKALGTSVDTIKSWESKRRNPTGLAAKVLNVIRENPAFYKALAGQ
>NZ_CP012165.1|WP_032610190.1|1398133_1398520_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MSHAIEFIETSLFTRQIKSIATDDELKDLQKELIAWPDKGDLIQQTGGLRKIRMAAGSKGKRGGIRVIYFLATEEVIYFIMAYPKCIKDSLTETEKAELKKLTSILKNTASSAVNLRCTMYPNQAGGG
>NZ_CP012165.1|WP_039264669.1|1395961_1397995_+|choline-BCCT-transporter-BetT
MTDLSQDREKDKINPVVFYTSAGLILLFSLTTIFFRDFSAEWIGRTLDWVSKTFGWYYLLAATLYIVFVVCIACSRFGSVKLGPEQSKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTMEAARQTMVWTLFHYGLTGWSMYALMGMALGYFSYRYNLPLTIRSALYPIFGKKINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPDSMAAKAALIALSVIIATISVTSGVDKGIRVLSELNVALALGLILFVLFMGDTSFLLNALVLNVGDYVNRFMGMTLNSFAFDRPTEWMNNWTLFFWAWWVAWSPFVGLFLARISRGRTIRQFVMGTLIIPFTFTLLWLSIFGNSALHEIIHGNATFAQEAMAHPERGFYSLLAQYPAFTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRIFWSVAIGLLTLGMLMTNGISALQNTTVIMGLPFSFVIFFVMAGLYKSLKVEDYRRVSASRDTAPRPLGAQDRLSWKKRLSRLMNYPGTRYTKQMMETVCFPAMEEVAQELRLRGAYVELKNLPPEEGENLGHLDLLVHMGDEQNFVYQIWPQQYSVPGFTYRARSGKSTYYRLETFLLEGSQGNDLMDYSKEQVITDILDQYERHLNFIHLHREAPGNSVMFPDV
>NZ_CP012165.1|WP_003858827.1|1395245_1395833_-|transcriptional-regulator-BetI
MPKVGMQPIRRRQLIDATLEAINEVGMHDATIAQIARRAGVSTGIISHYFKDKNGLLEATMRDITGQLRDAVLSRLRALPDGSAEQRLQAIVGGNFDETQVSGAAMKAWLAFWASSMHQPMLYRLQQVSSRRLLSNLVYEFRRELPREQAEEAGYGLAALIDGLWLRAALSGKPLDKTLAQSLTSHFISQHLPTD
>NZ_CP012165.1|WP_022650555.1|1393759_1395232_-|betaine-aldehyde-dehydrogenase
MSRMAEQQLYINGGYTSATSGRTFETINPANGEVLATVQAAGREDVDRAVESAKRGQKIWAAMTAMERSRILRRAVDILRERNDELATLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGSQIPLRDTSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGLPDGVFNVLPGVGAETGQYLTEHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANFFSSGQVCTNGTRVFVPAKFKAAFEQKIVERVGRIRAGDLFDEATNFGPMVSFPHRDSVMRYIAKGKEEGARVLCGGDVLKGEGFDNGAWVAPTVFTDCTDEMTIVREEIFGPVMSILTYESIEEAIRRANDTDYGLAAGIVTTDLNRAHGAIHQLEAGICWINTWGESAAEMPVGGYKHSGIGRENGVMTLQSYTQVKSIQVEMGKFQSIF
>NZ_CP012165.1|WP_032608815.1|1403206_1405447_-|TonB-dependent-siderophore-receptor
MNKKIHSLALLVNLGIYGVALPAMADDNTASAQHEDTMVITAAEQNLQAPGVSTITADEIRKNPPARDVAEIIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPENTLILIDGKPVTSRNSIRLGWRGERDTRGDTGWVPPEMIERIEVIRGPAAARYGNGAAGGVVNIITKKFDDQWHGSWNTYLNAPEHKDEGSTKRTNFSLSGPLGGDFSFRMYGNLDKTQADAWDINQGHQSDRTGAYANTLPAGREGVENKDINGVVRWDFAPMQSLEFEAGYSRQNNLYAGDTQNTNNDNALVKKNYGKETNRIYRQNFAVTWNGGWDNGITTSNWAQYEHTRNSRLGEGLAGGLEGLFNSNKFTDTDLADVMLHSEINLPIDFIVNQNLTLGTEWNQQRMKDSTSFTQTQQGGPIPGMSEDRSPYTSAEIFSLFAENNMELTDSTMLTPALRFDHHTIVGNNWSPSLNLSQGLGDDFTLKMGIARAYKAPSLYQTNPNYLLYSKGQGCYASSDGVGCYMMGNDDLKAETSINKEIGLEWKRDGWLAGVTWFRNDYRNKIEAGYAPIGQTSTGKVTTDIYQWENVPKAVVEGLEGSLNVPVSDTINWTNNITYMLQSKNKETGDRLSIIPEYTLNSNLSWQVRQDVSLQSTFTWYGKQQPKKYNYKGQPVTGSEKDEVSPYSIVGLSATWDVTKNVSLTGGVDNVFDKRQWRAGNAQTTGNTTTGAYMYGAGAYTYNEPGRTWYMSVNTRF
>NZ_CP012165.1|WP_032608817.1|1405593_1406793_+|enterochelin-esterase
MTVLTTGSEAWWQAKNGPERERHQENYRVTFWWRDPAGTQKTSTVKRVWLYVTGVTDHHQNARPQSLERVPDTDVWQWQGEFSPEWRGSYCFIPSDNENDFADAVFEGEQPDRMALREGWRKLLPHAVSDPLNPQSWRGGRGHAVSALEMPEAPVQPGWNHPDTPYNKPVCIDWHSARLKNRRRVWIFTTGDESPERPLAVLLDGQFWAESMPVWPALASLTHEGKLPPAVYVLIDVIDTAHRSRELPCNPDFWLAVQEELLPQVKSMAPFSDRADHTVVAGQSFGGLSSLYAGLNWPQRFGCILSQSGSYWWPHRGAQQDGLLIEQLKAGEKTARGLRIVLEAGRNEPLILRANQAIFAELHTQQPVFWRQVDGGHDALCWRGGLTQGLMTLWQPLIQ
>NZ_CP012165.1|WP_003858806.1|1406803_1407016_+|MbtH-family-NRPS-accessory-protein
MEFSNPFDNPQGQFAILQNDQGQYSLWPQQCELPAGWRVVCEPQSQEACQQWLAEQWQTLEPFYFAGERA
>NZ_CP012165.1|WP_032608818.1|1407012_1410870_+|enterobactin-non-ribosomal-peptide-synthetase-EntF
MNRLPLVAAQPGIWMAEQLSSLPNAWSVAHYTELKGAIDAPLLAKAIAEGMMQADTLRMRFAEDNGEVWQWIDEAMLLPEPSIVRVDSHDAAVALMEADLNQNLRVDSGLPLAFHQLIQVGESHWYWYQRYHHLVVDGFSFPAITRQIAAIYAAWQKGEPAPASPFTPFAEVVEEYQRYRDSEAYQRDGAFWAEQRQQLPSPVSLSSAPLPGHAATTDILRLKMAMDGRAFSQLAQMAGQAQRTDLALALVVLWLGRLTGRLDYAAGFIFMRRMGSAALTATGPVLNVLPLAVNIRPHESLPELALRLANQLKKMRRHQRYDAEQIVRDSGRAAGDEALFGPVLNVKVFDYQLDIDGVEAITHTLATGPVNDLELALFPDEQGGLSIEILANGQRYDEATLKGHAVRLNAMLTQFAANPDLRCGDVETVSEQEYARLARINDTGLALPSTTLADLVAEQASKTPDAPALADAHTELNYRQMREQVVALANLLRARGVKPGDSVAVALPRSVFLTLALHGIVEAGAAWLPLDTGYPDDRLRMMLEDAKPSLLITTDEQLPRFSDLSVETFSYNTLLPTSGAEPLRLAKPEQTAYIIFTSGSTGRPKGVMVGHTAIVNRLKWMQDHYPLTAHDVVAQKTPCSFDVSVWEFWWPFIAGAKLVMAEPDAHRDPQAMQSFFAEYGVTTTHFVPSMLAAFVASLTPENAHCCRTLKQVFCSGEALPTALCREWEQLTHAPLHNLYGPTEAAVDVSWYPAYGPELAAVEGNSVPIGFPVWNTGLRILDAMMRPVPFGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDNGAVEYLGRSDDQLKIRGQRIELGEIDRAMLALPDVAQAVAHACVFNQAAATGGDARQLVGYVVSESGLPLDRDALLASLKAQLPPHMVPVVLLQISALPLSANGKLDRKALPLPELTSRTSGRAPETQTEVAVAQAFSSLLGCAVNDIEADFFALGGHSLLAMRLAAQLSRAFSRKVTPGQIMVASTVSKLSALLDSQMSDEQAQRLGYETLLPLRESNGPTLFCFHPASGFAWQFSVLARYLSPRWSIVGIQSPRPNGPMQQCADLDGVIEHHLNTLRKQQPQGPYYLFGYSLGGTLAQGIAARLREQGEAVAFLGLLDTWPPETQNWAEKEANGLDPAVLAEIERERQAFIAAQQGQGSSELFNAIEGNYADAVRLLTTAHSARFDGKATLFVAERTRTQDPQAAWAPWVGELEVYSQDCAHVDIISPQAFEKIGPVLKEILG
>NZ_CP012165.1|WP_032608819.1|1410958_1411759_-|iron-enterobactin-ABC-transporter-ATP-binding-protein
MTDSTTRLRGENLTLGYGKKIIARDLSVAIPDGHFTAIIGPNGCGKSTLLRTLSRLMSPVEGSVFLDGEQIQRFASKEVARRIGLLAQNATTPGDITVQELVSRGRYPHQPLFTRWRKEDDEAVKRAMQATGITELAQQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSELNRTQGYTLAAVLHDLNQACRYATHLIALRDGEIVAQGAPKEIVTPELIARIYGMRCMIIDDPVAGTPLVVPLGKRAV
>NZ_CP012165.1|WP_026080545.1|1411755_1412745_-|iron-enterobactin-ABC-transporter-permease
MAPSRRLLTSVALLVVASLLLAVWSLQSGAVTLDFAQVFHALTGSAPRNITMVVTEWRLPRVAMAILVGAALGVSGAIFQSLMRNPLGSPDVMGLNTGAWSGVLVAMVLFGQHLTAITFTAMAGGILTSLLIWALAWRNGIDTFRLIIIGIGIRAMLMAFNTWLLLQASLETALSAGLWYAGSLNGLTWGKTWPAAPLIILMFIGALLLVRRMRLLEMGDDSACALGVSVERSRLMLMLVAVLLTAASTAIAGPISFIALVAPHIARRLSGTARWGLTQAALCGAVLLLAADLCAQRLFTPYQLPVGVVTVSLGGIYLIVLLVQESRKK
>NZ_CP012165.1|WP_032608820.1|1412744_1413749_-|Fe(3+)-siderophore-ABC-transporter-permease
MSFSSSAVRAIAVPVLLLLLILAIALSLLVGAKPLPASVIVDAISGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGILGVNSGASFAIVLGAALFGFTSPSEQLVMAFCGALAASLVVAFTGSQGGGQLSPVRLTLAGVALAAVLEGLSNGIALLNPDVYDQLRFWQAGSLDIRTLETLKVVVIPASVAAAVALCLSRALNSLSLGSDTATALGNRVARTQLTGLLAITVLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADVLGRLLVPGELRVSVVSAFIGAPVLIFLVRRRRGGSA
>NZ_CP012165.1|WP_032608821.1|1413857_1415105_+|enterobactin-transporter-EntS
MNQKSWLLNLSLLKTHPAYRAVFIARFISILSLGLLGVAVPVQIQTMTHSSWLVGLSVTLTGGAMFIGLMVGGVLADRYERKKLILLARGTCGVGFVGLCLNAMLPEPSLVAIYVLGLWDGFFASLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPMVGGLLLATGNVAWNYGLAAAGTFITTLTLLRLPLLPPPPQPREHPLKSLMAAIRFLFSNPLIGGIALLGGLLTMASAVRVLYPALAGEWQMSASEIGVLYAAIPLGAACGALTSGNLAQSARPGLIMLVATLASFIAIGFFSLMPVWALGVMCLVIFGWLSAVSSLLQYTLIQTQTPEGMLGRINGLWTAQNVTGDAIGAAILGGMGAIMTPVASASSSGFVLAMVGAILLVTLVELRRFRQEVALNDGAA
>NZ_CP012165.1|WP_032608822.1|1415151_1416111_-|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein
MKIAAVCRNALLLTGLFVLGLTSAAADDWPRQVSDSRGVHTLESKPTRIVSTSVTLTGSLLAIGAPVIASGATTPNNRVADAQGFLRQWGDIAKQRKVARLYIGEPSAEAVAAQMPDLILISATGGDSALALYDQLSAIAPTLIINYDDKSWQELLTQLGTITGQETQAAERIAAFDKQLAQVKQQMKLPPQPVNAIVYTAAAHTANLWTTDSAQGKLLHQLGFTLADLPAGLQTSTSQGKRHDIIQLGGENLATGLNGEGLFVFAGDEKDVNAIYANPLLAHLPSVKNKRVWALGTETFRLDYYSAMLVLDRLNALFK
>NZ_CP012165.1|WP_032608824.1|1416299_1417475_+|isochorismate-synthase-EntC
MDTSLAEEVQHTATTLQADSFFFMSPYRSFTTSGCFARFSEPAVGGDDPAGPFQQKLAQAFRNAKNSGIAHPVMVGAIPFDTRKPSSLFIPQRWQTFSRPARQQSARYASGAQTLNVQQRTEIPPQPVFEEMVARAASLTATPQVNKVVLSRLIDIATDKQIDSSALMERLIAQNPASFNFHVPLEDGGVLLGASPELLLRKEGAHFSSLPLAGSARRQPDDVLDREAGTKLLASEKDRHEHDLVTQAMKTILEPRSHHLSMPASPQLITTPTLWHLATPVEGDARENENALTLACLLHPTPALSGFPHQAAKELIAELEPFDRELFGGIVGWCDSEGNGEWVVTIRCARLHQNTVRLFAGAGIVPASSPVGEWRETGVKLSTMLNVFGLH

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Crispr_ID: NZ_CP012165_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012165_3

2107657-2107780

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012165_3

>merge|NZ_CP012165|3|2107657-2107780|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACAGACGCAAGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP012165|3|3|2107657-2107780|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CAGACGCAAGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012165.1\|WP_003857631.1\|2115474_2116641_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP012165.1\|WP_003857632.1\|2115223_2115313_+\|YnhF-family-membrane-protein	unknown	unknown	unknown
NZ_CP012165.1\|WP_003857641.1\|2110212_2111361_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP012165.1\|WP_032610207.1\|2105080_2105524_+\|type-VI-secretion-system-baseplate-subunit-TssE	unknown	unknown	gnl\|CDD\|274540
NZ_CP012165.1\|WP_032610209.1\|2105855_2106251_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182205
NZ_CP012165.1\|WP_003857647.1\|2106980_2107451_+\|Hsp20-family-protein	unknown	unknown	gnl\|CDD\|107227
NZ_CP012165.1\|WP_032609059.1\|2111659_2112859_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP012165.1\|WP_032609057.1\|2104577_2105081_+\|type-VI-secretion-system-lipoprotein-TssJ	unknown	unknown	gnl\|CDD\|378947
NZ_CP012165.1\|WP_003857638.1\|2112971_2113883_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP012165.1\|WP_022650936.1\|2106607_2106808_+\|cell-surface-composition-regulator-GlgS	unknown	unknown	gnl\|CDD\|179501
NZ_CP012165.1\|WP_003856899.1\|2100375_2100867_+\|type-VI-secretion-system-contractile-sheath-small-subunit	unknown	unknown	gnl\|CDD\|377529
NZ_CP012165.1\|WP_003857629.1\|2116678_2117260_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP012165.1\|WP_003857665.1\|2096400_2096541_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012165.1\|WP_023313959.1\|2117382_2118141_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|366353
NZ_CP012165.1\|WP_003857634.1\|2113900_2114926_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP012165.1\|WP_032609058.1\|2107940_2109314_-\|MdtK-family-multidrug-efflux-MATE-transporter	unknown	unknown	gnl\|CDD\|234981
NZ_CP012165.1\|WP_003857662.1\|2097521_2098157_+\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|238449
NZ_CP012165.1\|WP_032609055.1\|2096666_2097449_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293813
NZ_CP012165.1\|WP_003857643.1\|2109539_2110181_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP012165.1\|WP_032610204.1\|2100907_2102437_+\|type-VI-secretion-system-contractile-sheath-large-subunit	unknown	unknown	gnl\|CDD\|274538

Protein	Function_ID	Function_description	E-value
NZ_CP012165.1\|WP_003857631.1\|2115474_2116641_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.19451e-99
NZ_CP012165.1\|WP_003857641.1\|2110212_2111361_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP012165.1\|WP_032610207.1\|2105080_2105524_+\|type-VI-secretion-system-baseplate-subunit-TssE	gnl\|CDD\|274540	TIGR03357, hypothetical_protein_Atu4338, type VI secretion system lysozyme-like protein. The description for Pfam family pfam04965 cites acidic lysozyme activity for some phage-encoded members. This family represents a different subgroup of the proteins from pfam04965, where all members are associated with bacterial type VI secretion system genomic contexts.	3.45101e-27
NZ_CP012165.1\|WP_032610209.1\|2105855_2106251_+\|hypothetical-protein	gnl\|CDD\|182205	PRK10040, PRK10040, hypothetical protein; Provisional.	2.49139e-16
NZ_CP012165.1\|WP_003857647.1\|2106980_2107451_+\|Hsp20-family-protein	gnl\|CDD\|107227	cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 600-kDa structures. This elevated activity seen under heat shock conditions is retained for an extended period of time after the temperature is returned to normal. IbpA also forms multimers.	3.67422e-40
NZ_CP012165.1\|WP_032609059.1\|2111659_2112859_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP012165.1\|WP_032609057.1\|2104577_2105081_+\|type-VI-secretion-system-lipoprotein-TssJ	gnl\|CDD\|378947	pfam12790, T6SS-SciN, Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113. One of the virulence mechanisms of E coli is the production of toxins which it produces from dedicated machineries called secretion systems. Seven secretion systems have been described, which assemble from 3 to up to more than 20 subunits. These secretion systems derive from or have co-evolved with bacterial organelles such as ABC transporters (type I), type IV pili (type 2), flagella (type 3), or conjugative machines (type IV). The type VI secretion system (T6SS) is present in most pathogens that have contact with animals, plants, or humans. SciN is a lipoprotein tethered to the outer membrane and expressed in the periplasm of E coli and is essential for T6S-dependent secretion of the Hcp-like SciD protein and for biofilm formation.	7.50901e-39
NZ_CP012165.1\|WP_003857638.1\|2112971_2113883_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP012165.1\|WP_022650936.1\|2106607_2106808_+\|cell-surface-composition-regulator-GlgS	gnl\|CDD\|179501	PRK02922, PRK02922, cell surface composition regulator GlgS.	5.34664e-29
NZ_CP012165.1\|WP_003856899.1\|2100375_2100867_+\|type-VI-secretion-system-contractile-sheath-small-subunit	gnl\|CDD\|377529	pfam05591, T6SS_VipA, Type VI secretion system, VipA, VC_A0107 or Hcp2. VipA is a family of Gram-negative bacterial proteins that form part of the type VI pathogenic secretion system. Members have been variously defined as VC_A0107 family, Hcp2 and VipA, for ClpV-interacting proteins. VipB and VipA proteins interact very closely to form the shaft of the pathogenic penetrating needle system.	8.88794e-67
NZ_CP012165.1\|WP_003857629.1\|2116678_2117260_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	1.40399e-136
NZ_CP012165.1\|WP_032609058.1\|2107940_2109314_-\|MdtK-family-multidrug-efflux-MATE-transporter	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP012165.1\|WP_003857634.1\|2113900_2114926_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP012165.1\|WP_023313959.1\|2117382_2118141_-\|C40-family-peptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	1.9126e-42
NZ_CP012165.1\|WP_003857662.1\|2097521_2098157_+\|carbonic-anhydrase	gnl\|CDD\|238449	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	1.47181e-91
NZ_CP012165.1\|WP_032609055.1\|2096666_2097449_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293813	cd07727, YmaE-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YmaE and related proteins; MBL-fold metallo hydrolase domain. Includes the uncharacterized Bacillus subtilis YmaE and Nostoc all1228 proteins.Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry. .	4.33753e-54
NZ_CP012165.1\|WP_003857643.1\|2109539_2110181_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	5.19053e-120
NZ_CP012165.1\|WP_032610204.1\|2100907_2102437_+\|type-VI-secretion-system-contractile-sheath-large-subunit	gnl\|CDD\|274538	TIGR03355, VI_chp_2, type VI secretion protein, EvpB/VC_A0108 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0

>NZ_CP012165.1|WP_003857647.1|2106980_2107451_+|Hsp20-family-protein
MMTLRTFPVLNDLSDSLFADRFNRIDRLFSQLTGSTPLPSTPSYNIRRLGDNRYELTLSVPGWKESELEIETVGGQLNISGKREEEKTENGEEGWIHRGISRSDFRASYSLPEHVKVTGASLENGLLAIELHQDIPEEEKPQRIAINNNPAIEHKP
>NZ_CP012165.1|WP_022650936.1|2106607_2106808_+|cell-surface-composition-regulator-GlgS
MKRQDINALKNFDFLARSFARMYALGQPVDIDAVTGNMSNKQQAWFRERYDHYRKQAERARVIELR
>NZ_CP012165.1|WP_032610209.1|2105855_2106251_+|hypothetical-protein
MKMRILLLMVSVLFNMQADAARGRQPCSGSKGGIAHCTSDGRFVCNDGSLSQSKRFCSGYGASELPRQVKPSPSARKAQTKKRIAVKGQEQRVVENNAQFDTQPRQPTCAPLYMANKPGFTHLPICSGNQY
>NZ_CP012165.1|WP_032610207.1|2105080_2105524_+|type-VI-secretion-system-baseplate-subunit-TssE
MPRPSLYDMLYGNFAGGLDLHSVSEENQLILSVLDNMQRILNCRAGTLAHLPDYGLPDMTKILQGMPGTAHQLITTLSAVLMKYEPRLSRINVVMQEQIQPGELRYAIDAELKGVGLVRYGTEFMPEGRVLIRHLKQQQYLDNTARL
>NZ_CP012165.1|WP_032609057.1|2104577_2105081_+|type-VI-secretion-system-lipoprotein-TssJ
MFSQKGNVSGGKRITVRACPAGTVAVTKSIFYRQVKTLHLDIQAREGVNNNAKGASLATVVRIYQLKERKAFDSTDYPSLFASDTQAIKADLVAEKDIRLRPGESVTLDMPMEESAQVVAVAGMFMAPDQVNDTWRITLTRDDLDPDKARVIEVSNNRLTLKPLEGE
>NZ_CP012165.1|WP_032610204.1|2100907_2102437_+|type-VI-secretion-system-contractile-sheath-large-subunit
MSVNTETASAQGQTTVLEKEGVYASLFEKINLTPASSLGDINAFLDDAALSDAPAGERLTAAMQVFMDCIRKSGQPVEKLDKTLIDHHIAELDFQISRQLDAVMHHQEFQKVESLWRGLKQLVDSTDYRQNVKTEILDVSKEDLRQDFEDAPELIQSGLYWHTYTAEYDTPGGEPIGSVISSYEFDASPQDVALLRNISKVSAAAHMPFIGSVGPKFFLKDSMEEVAAIKDIGNYFDRAEYIKWKSFRDTDDARYIGLVMPRVLGRLPYGPDTVPVRSFNYVEQVKGPDHEKYLWTSASFSFASNMVKSFINNGWCVQIRGPQAGGAVKDLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYACFFSANSAQKPALYDTADATANSRINARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNTWVRSLVTEMTDPGDELQASHPLRDAKVVVEDIEDNPGFFRVKLFAVPHFQVEGMDVNLSLVSQMPKA
>NZ_CP012165.1|WP_003856899.1|2100375_2100867_+|type-VI-secretion-system-contractile-sheath-small-subunit
MADSFQNEVPKARINLKLALHTGGAQKKIELPLKLLTVGDFSNGKENRPLSEREKINVNKNNFNSVLSEFNPEVNLTVPNTMAGDGSEESIKLNFSDIKDFEPEQVARQIPQLRAMLAMRNLLRDLKSNLLDNATFRKELEKILKDPALSQELRDEMSALAPK
>NZ_CP012165.1|WP_003857662.1|2097521_2098157_+|carbonic-anhydrase
MQHIIEGFLSFQKEIFPQRKELFRSLASSQNPKALFISCSDSRLVPELVTQQEPGQLFVIRNAGNIVPPFGPEPGGVSATIEYAVVALGVTDIVICGHSNCGAMKAIADNADLEPMPAVSHWLRYSDAAKAVVEKKTWDKPIDKVNAMVQENVFAQLSNIKTHPSVAVGLRNNAIRLHGWVYDIESGKILALDKNTKSFVSLSENPEVFFE
>NZ_CP012165.1|WP_032609055.1|2096666_2097449_+|MBL-fold-metallo-hydrolase
MITLCKTCGTAYDEQPKNCPICDDERQYVPVTGQAWTDFYSLTTTHTNKWQQLEPQLFSIKTVPAFAINQRALLLRTPQGNVLWDCIANLDPATRALVDALGGISAIAISHPHYYTTMQEWAAAFNAPIYLHASDRQWVMRDSPAIRFWEEDALEIMSLVTLLRLGGHFAGGTVLHWQSGDGVLLAGDILQVTPGKDAVSFMWSYPNMLPLPARTVESVIGRLTGKTYQRLYGAFEGQNIPVNADEIVQRSGQKYIACLR
>NZ_CP012165.1|WP_003857665.1|2096400_2096541_-|hypothetical-protein
MEIDLDNLVFNGLDEAEERNAERLDDADKKAQAIVADDDCGDACKI
>NZ_CP012165.1|WP_032609058.1|2107940_2109314_-|MdtK-family-multidrug-efflux-MATE-transporter
MQKYMIEARQLLALAIPVIVAQVAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRDRVAHQVRQGFWLAGFVSVLIMIVLWNAGYIIRAMHNIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFGSMLTYIKHARSMRDIRNDTAFSTPDWSMLTRLTQLGLPIALALFFEVTLFAVVALLVSPLGIIDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGFRLGQGSTLDAQTAARTGLGVGVCMAVCTALFTVLLREQIALLYNDNPEVVTLASHLMLLAAIYQISDSIQVIGSGVLRGYKDTRSIFFITFIAYWVLGLPCGYILALTDLVVDRMGPAGFWMGFIIGLTSAAIMMMLRMRFLQRQPSTVILQRAAR
>NZ_CP012165.1|WP_003857643.1|2109539_2110181_+|riboflavin-synthase
MFTGIVQGTAKVVSIDEKPNFRTHVVELPEYMLDGIETGASIAHNGCCLTVTEINGNQISFDLMKETLRITNLGELVVGDIINVERAAKFSDEIGGHLMSGHIMTTAEVAKIVTSENNRQIWFKVQDPSLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLQRTTLGAKKLGQRVNIEIDPQTQAVVDTVERVLAAKEAAIIKTVEEE
>NZ_CP012165.1|WP_003857641.1|2110212_2111361_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWSRIVSELLGRAGITINGSSPSDPQIKHPDFFKRVLQEGSLGLGESYMDGWWECERLDMFFSSVLRAGLEKQLPRHFKDTLRIASARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPLMQYSCGYWKKATTLEEAQQDKLQLICDKLQLQPGMRVLDIGCGWGGLAWFMAKNYGVSVVGVTISAEQQKMAQERCLGLDVDIRLQDYRDLNEQFDRIVSVGMFEHVGPKNYKTYFEVADRNLKPDGIFLLHTIGSKRTDNNVDPWINKYIFPNGCLPSVRQIANASEPHFIVEDWHNFGADYDTTLMAWHERFQAAWPEIADNYSERFKRMFSYYLNACAGAFRARDIQLWQVVFSRGIEHGLRVAR
>NZ_CP012165.1|WP_032609059.1|2111659_2112859_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPKKGFLVWLGGLSVLGFLATDMYLPAFAAMQEDLQTPAAAISASLSLFLAGFAFAQLLWGPLSDRFGRKPVLLLGLAIFAAGCLGMLWVRDAAWLLALRFIQAVGVCAAAVTWQALVTDYYPASRTNRIFATIMPLVGLSPALAPLLGSWILAHFDWQAIFATLFAITLVLMLPAFGLKPAHKKETHPDAKPITFTSLLRSKAYRGNVLIYAACSASFFAWLTGSPFILHDMGYSPAAIGLSYVPQTIAFLVGGYGCRAALQKWEGQQMLPWLLVLYALSVIATWAVGFIPGAGLAEILIPFCVMAIANGAIYPIVVAQALRPFPQATGRAAALQNTLQLGLCFLASLVVSALIATPLLTTTSVMLITVALAGLGYRMQSSALREQNDNAQTETSHA
>NZ_CP012165.1|WP_003857638.1|2112971_2113883_+|LysR-family-transcriptional-regulator
MWSDYSLEVVDAVARNGSFTGAAQELHRVPSAISYTVRQLEAWLAVPLFERRHRDVELTPAGAWFLKEGRSVIKKMQITREQCQQIANGWRGHLAIAVDNIVKPERTRQMIVDFYRHFSDVELRVSQEVFNGVWDALADGRAEMAIGATQAIPVGGRYAFRDMGMLSWTCVVARDHPLAALEGPLSDDTLRNWPSLVLEDTSRSLPKRITWLLDNQRRVVAPDWESSATCLSAGLCVGMVPVHFARPRIDAGEWVALTLENPFPDAACCLTWQQNDVSPAMAWLLDYLGDSETLNREWLREPA
>NZ_CP012165.1|WP_003857634.1|2113900_2114926_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNIEKQRAYLSMMAQKRVDGLLVMCSEYPESVLSMLEEYRHIPMVVMDWGEARADFTDSVIDNAFEGGYMAGRYLVERGHREIGVIPGPLERNTGAGRLAGFMKAMEEALITVPENWIVQGDFEPESGYRAMQQIVSQPHRPTAVFCGGDIMAMGALCAADELGLRVPQDISVIGYDNVRNARFFTPALTTIHQPKDSLGETAFNMLLDRIVNKREQSQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP012165.1|WP_003857632.1|2115223_2115313_+|YnhF-family-membrane-protein
MSTDLKFSLFTTIVVLALIVAGGLTAALH
>NZ_CP012165.1|WP_003857631.1|2115474_2116641_+|MFS-transporter
MKINFPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAIGVMVGAPLMTLLLSHRARRNALIFLMAIFTLGNVFSAISPDYTTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTIANIGGVPAATWLGEAIGWRMSFLATAGLGVVAMVALFFSLPKGSAGERPEVRKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLHDITHATPLFVTAMLVLIGVGFSIGNYLGGKFADRSVSGTLKGFLTLLIVIMVAIPWLARNEVGAAIAMVVWGAATFAVVPPLQMRVMRVAHEAPGLSSSVNIGAFNLGNALGAAAGGAVISGGLGYSFVPVMGAIIAALGLLLVIMSGRKQPQAVCTAE
>NZ_CP012165.1|WP_003857629.1|2116678_2117260_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTDFEGKTLEEIVRSSDGGVFNNAAQVWNHTFYWHCLAPNAGGEPDGELAAAINAAFGSFADFKAKFTDAAVKNFGSGWTWLVKEADGKLAIVSTSNAGTPLTTSATPLMTVDVWEHAYYIDYRNARPNYLEHFWALVNWEFVAKNFAA
>NZ_CP012165.1|WP_023313959.1|2117382_2118141_-|C40-family-peptidase
MARITKISMTLCALLFTTLSFTPAANASEQARHSAVQKTHLAKSTERKKKTTSKTVKKKITAQTKKTASSKTKTLRSGTHKTTRTTASLVNEKCTVRKGHKTKCAKVTKLADVHKARMQKAQKTAMNKLMGQIGKPYRWGGTSPRTGFDCSGLVYYAYKDLVKFRIPRTANEMYHLRDAAPVNRGELQNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRSGQDIQITSLSEDYWVRHYVGARRVMTPKTIR

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Crispr_ID: NZ_CP012165_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012165_4

3540827-3540941

Orphan

Consensus_repeat	Method
TCCCTGTTTTCGGGGATAACCATCCCCGTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012165_4

>merge|NZ_CP012165|4|3540827-3540941|CRISPRCasFinder
TCCCTGTTTTCAGGGATCCCTTTCCCTGTTTTCGGGGATAACCATCCCCGTTTTCAGGGATGGTTTGACGGTTATTTTCACCATCCCCGTTTTCAGGGGTAACCATCCCTGTTTT

>NZ_CP012165|4|4|3540827-3540941|CRISPRCasFinder
TCCCTGTTTTCAGGGATCCCTTTCCCTGTTTT	CGGGGATAACCATCCCCGTTTTCAGGGATGGTTTGACGGTTATTTTCACCA
TCCCCGTTTTCAGGGGTAACCATCCCTGTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012165.1\|WP_032654607.1\|3545266_3545425_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012165.1\|WP_044596286.1\|3544271_3544481_-\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP012165.1\|WP_032619247.1\|3544766_3544952_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012165.1\|WP_044596231.1\|3538985_3539672_-\|DUF1627-domain-containing-protein	unknown	unknown	gnl\|CDD\|369520
NZ_CP012165.1\|WP_022651653.1\|3538392_3538725_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012165.1\|WP_044596235.1\|3535263_3537243_-\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348
NZ_CP012165.1\|WP_017693509.1\|3533886_3534486_-\|DUF1367-family-protein	unknown	unknown	gnl\|CDD\|369209
NZ_CP012165.1\|WP_044596287.1\|3543154_3544231_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379293
NZ_CP012165.1\|WP_044596232.1\|3538721_3538982_-\|DUF977-family-protein	unknown	unknown	gnl\|CDD\|310626
NZ_CP012165.1\|WP_044596226.1\|3542639_3543035_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP012165.1\|WP_044596224.1\|3545920_3548989_+\|PD-(D/E)XK-nuclease-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|236615
NZ_CP012165.1\|WP_044596233.1\|3537988_3538393_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012165.1\|WP_044596230.1\|3539688_3540441_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|183482
NZ_CP012165.1\|WP_032665953.1\|3545510_3545798_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012165.1\|WP_044596234.1\|3537239_3537986_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP012165.1\|WP_044596227.1\|3542302_3542536_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP012165.1\|WP_071886175.1\|3534522_3534771_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012165.1\|WP_006811588.1\|3534886_3535120_-\|DinI-family-protein	unknown	unknown	gnl\|CDD\|182578
NZ_CP012165.1\|WP_044596225.1\|3545071_3545257_+\|DUF1482-family-protein	unknown	unknown	gnl\|CDD\|369331
NZ_CP012165.1\|WP_044596228.1\|3541757_3542300_-\|toxin-YdaT-domain-containing-protein	unknown	unknown	gnl\|CDD\|368819

Protein	Function_ID	Function_description	E-value
NZ_CP012165.1\|WP_044596286.1\|3544271_3544481_-\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	3.11744e-28
NZ_CP012165.1\|WP_044596231.1\|3538985_3539672_-\|DUF1627-domain-containing-protein	gnl\|CDD\|369520	pfam07789, DUF1627, Protein of unknown function (DUF1627). This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.	1.23763e-05
NZ_CP012165.1\|WP_017693509.1\|3533886_3534486_-\|DUF1367-family-protein	gnl\|CDD\|369209	pfam07105, DUF1367, Protein of unknown function (DUF1367). This family consists of several highly conserved, hypothetical phage proteins of around 200 residues in length. The function of this family is unknown. Some proteins are annotated as IrsA (intracellular response to stress).	5.84592e-112
NZ_CP012165.1\|WP_044596232.1\|3538721_3538982_-\|DUF977-family-protein	gnl\|CDD\|310626	pfam06163, DUF977, Bacterial protein of unknown function (DUF977). This family consists of several hypothetical bacterial proteins from Escherichia coli and Salmonella typhi. The function of this family is unknown.	6.00765e-26
NZ_CP012165.1\|WP_044596226.1\|3542639_3543035_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.85377e-06
NZ_CP012165.1\|WP_044596224.1\|3545920_3548989_+\|PD-(D/E)XK-nuclease-like-domain-containing-protein	gnl\|CDD\|236615	PRK09709, PRK09709, exodeoxyribonuclease VIII.	2.64809e-89
NZ_CP012165.1\|WP_044596235.1\|3535263_3537243_-\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	3.3716e-23
NZ_CP012165.1\|WP_044596230.1\|3539688_3540441_-\|ATP-binding-protein	gnl\|CDD\|183482	PRK12377, PRK12377, putative replication protein; Provisional.	1.07276e-153
NZ_CP012165.1\|WP_044596234.1\|3537239_3537986_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.21697e-06
NZ_CP012165.1\|WP_044596227.1\|3542302_3542536_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	3.6601e-20
NZ_CP012165.1\|WP_006811588.1\|3534886_3535120_-\|DinI-family-protein	gnl\|CDD\|182578	PRK10597, PRK10597, DNA damage-inducible protein I; Provisional.	2.77257e-26
NZ_CP012165.1\|WP_044596225.1\|3545071_3545257_+\|DUF1482-family-protein	gnl\|CDD\|369331	pfam07358, DUF1482, Protein of unknown function (DUF1482). This family consists of several Enterobacterial proteins of around 60 residues in length. The function of this family is unknown.	9.94321e-23
NZ_CP012165.1\|WP_044596228.1\|3541757_3542300_-\|toxin-YdaT-domain-containing-protein	gnl\|CDD\|368819	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT. YdaT_toxin is a family of putative bacterial toxins that are neutralized by the putative antitoxin YdaS, UniProtKB:P76063, family pfam144549.	2.16734e-42
NZ_CP012165.1\|WP_044596287.1\|3543154_3544231_+\|AAA-family-ATPase	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	3.35142e-30

>NZ_CP012165.1|WP_044596230.1|3539688_3540441_-|ATP-binding-protein
MKNVIGTGSALERLKKIIPASVQPKFNSVAEWQAWQEAEGRKRSGEIDKMNQRARSEKIFGRAGIQALHRSCSFANYEVNGPEQRQAYSMAKSYAQNFGGGSFASFVFSGAPGTGKNHLAAAIGNYLLGAGHSVLVVTIPDLMLRVRECYDDGQSESSLLNDLCNVDLLVLDEVGIQRGSSGEKVIINQVIDRRLSSMRPVGILTNLNHGELVNTLGARVMDRLQMDGGVWVNFDWESYRKNVSHLRPVK
>NZ_CP012165.1|WP_044596231.1|3538985_3539672_-|DUF1627-domain-containing-protein
METVIQALEKMGRATYREVAARLDIDPVDALTMLREQREQGLCDFGDGGWFLGTVKGQSQQSTPKAPVHPAPRLKGEEPEPVDPDVVRQQLREQGAMTTVSLAAAVNRNARGMVSVLRALERQGVVVKNGKGKGVTWSLAVVTEPVKQEPVPEAPAAPEEAKPVEQIVSEIPSFTEGRAAVEAVPAVRDISREIRRTRNKLEQLTKLRDAVRVIGRHRNLVQQLTGRE
>NZ_CP012165.1|WP_044596232.1|3538721_3538982_-|DUF977-family-protein
MARKKTDKERALIINRIIELVKEQGRITTNDVVAMFGLHRTTAEKYLRVAVEQGGLVRHGRCGIFRDLRATIDFDLKRFSHNKAAA
>NZ_CP012165.1|WP_022651653.1|3538392_3538725_-|hypothetical-protein
MSTITKEFTKEQLIARTEMRLAMVAGFPESKLAQMDKCLAKIAQAVLKAEPFLYAIADSEGEAHLDEFCVAYGEDALVSEISALNEMAESPGEEYKAVPVYRLPMLEGLK
>NZ_CP012165.1|WP_044596233.1|3537988_3538393_-|hypothetical-protein
MNAPLREWLNQTIVELEEERDATPGAVNEDATMALAAMKLALASLEARSRKLFTCSACGAEGLDEPLESKCHCNEDGAHWIESVVYTAPPALMLPEEMPKGLAGQIVSLLAHNIGDKLLAQKIWNVCRAAAKGE
>NZ_CP012165.1|WP_044596234.1|3537239_3537986_-|class-I-SAM-dependent-methyltransferase
MSEKIILDMCCGSRMFWLNKCDSRAVFTDIRCEEHELCDGRRLVISPDFIADFRALPFADNTFPVVVFDPPHLERVGEAAWMGKKYGRLNKKTWRSDLRAGFKEAFRVLRPHGVLIFKWNETQIPVSQVLALTDVKPIIGQRTGKNDKTHWISFVKDGEPQNNFDPQLQYATKRIIELENLLLVDVQDTVWPAEVGMVYSQIENAGDLPAHHQRRLKHHINRMWLEKLPVPSIVVAARSLAAAMEEYA
>NZ_CP012165.1|WP_044596235.1|3535263_3537243_-|DNA-cytosine-methyltransferase
MREIIVDNFAGGGGASTGIEMAIGRSVDIAINHDPNAVAMHTTNHPDTLHYCESVFDVNPQLATAGRPVGLAWFSPDCRHFSKAKGSKPVEKEIRGLAWIVIRWALAVRPRVMMLENVEEFKTWGPLLAGEMRPDPARAGETFEAFIGMLTTGISAHHPALAECCEFLNISLDSEEAARLVKGLGYAVEYRELRACDYGAPTIRKRFFMVMRCDGKPIVWPEPTHGDPKSPAVQAGKLAPWRTAAECIDWSIAAPSIFGRKKPLAENTLKRIARGIQRFVLDNPTPFIVKCNHTSTRSGYDCFRGQSLNEPLQTITKKHGYAIAVPHLTKFRTGATGQEVTEPVPTITAGTSKRPGGNGHAMGMVEAALTPFLAGNGGSEYQAKPRPLEKPAHTILKQSRACVVAPVIVRQFGASVGHRADEPSATITAGGGGKSQLVVPTLIQMGYGERPGQEPRVLQLDNPLGTVTAGGNKFATVSAFLAKHYGGNYQGAGVGMDEPMHSVTTVDHHAAVTSHLVKLRGTCRDGQRTDQPMPTITAGGTHVGEVKTMLAVDEYDEQRAQQALEFLREYCGPDSTGLVTLDGVVYRIVDIGMRMLQPHELYRAQGFPEWYIIDQDFRGVKYSKDKQVARCGNAVPPPFAEALVRANLPELCQSKEIAA
>NZ_CP012165.1|WP_006811588.1|3534886_3535120_-|DinI-family-protein
MKVELTIDRTKKLPDGAMPALEKELLKRLRNQFEDCSLVVRRAGSDGLSVYGGAKEAKKTVEGILQETWESADDWFY
>NZ_CP012165.1|WP_071886175.1|3534522_3534771_-|hypothetical-protein
MSDSSLQPSENSWYDIVRRSDGCVISSFPSSGRHLVYRVNGMVSVRPLLEDEEVFTPNGFMQFIRLLGYRVTPPSDNMKSTV
>NZ_CP012165.1|WP_017693509.1|3533886_3534486_-|DUF1367-family-protein
MAQLQLIKQSSGILIPATPETSDLLQSKIKLGAVLVADFKQVRNPAFHRRFFALLNLGFEYWEPTGGAISSNERKLVTGYAKFLASYGGNEGALLDAAEHYLEQVASRRVTNGISLCKSFDAYRAWVTIQAGHYDAIKLPDGTLQKHPRSISFANMDEIEFQQLYKAALDVLWRWILSKAFRDQREAENAAAQLMSFAG
>NZ_CP012165.1|WP_044596228.1|3541757_3542300_-|toxin-YdaT-domain-containing-protein
MHSISFQQNTGFPPAAMINRNQPGPADKHEQIRDAVRAWAASLDNQDVVAGIIVEEWERQGGAGLEFPEDLSRKRQKLFRWLDGDTEYARKNISLLSPAIIAVLPLEFRGRLVPQDCFMTRYAAMEKEIGEAKRAVILRAPQHQLVKEVREGIEHLLALLPGEAVVQVLSGLAVMGPGVM
>NZ_CP012165.1|WP_044596227.1|3542302_3542536_-|helix-turn-helix-domain-containing-protein
MKALDKAISIAGGATRLAEKLDVSSMTVSHWRHRDNGVVPANRVIPIFNATGVTPHELRPDLYLNPTDGLPAQEARA
>NZ_CP012165.1|WP_044596226.1|3542639_3543035_+|helix-turn-helix-domain-containing-protein
MRKNTHQTDNPQVRRLNEIIEKKRISKADIARICGVSAQSVNNWFVRGAIGKSSAIKLADALGVSLEWVLGQDVDAKDGLRHDERRLLELYNQLPNEEEQQNMLRIVSLRLKELDELYAKYMGRRIKGDTD
>NZ_CP012165.1|WP_044596287.1|3543154_3544231_+|AAA-family-ATPase
MPKSICFFNHKGGVSKTTTTFNLGWALAHEGKRVLMVDLDSQCNLTGMVLGYEKIDDGLDSFYSSRDNLTLGPIVEYLINGGQPESYLEKETGKLHPTLHENLLLLPGHLDVSDLDSQISVSLKIAAGIPATRNIPGNLPKILQLIAANNNIDYILYDLSPNVGGLNEVVLMSSDYFIVPVAPDFFCWQAIRSLSKNIPRWHKELALFKETNDGNSSQSIKNAPQFLGMIQQRYRPRKGAPVKSFEKWMTAIRDAVDTILVPNLEKINCIIPRSEVQHAIDKTTISGDLSAYDLAHISDFNSLIAISQQLATPVFSISDQQIRESGQFGHALSTMKSSRDAFDEQFKGLAQRVLDLTK
>NZ_CP012165.1|WP_044596286.1|3544271_3544481_-|fumarate-hydratase-FumD
MDYEEAAQLRYQEMCRIVGDVVFAMVAEGHETKRVAIADVIRTEISKGLSKWDADQIQVMELAVKLLEE
>NZ_CP012165.1|WP_032619247.1|3544766_3544952_+|hypothetical-protein
MAKRFTVVISGSNGYRTYQVKANDWKEADQIAINLHRSKEPDEPEYEIGVAAVIAGWPKVW
>NZ_CP012165.1|WP_044596225.1|3545071_3545257_+|DUF1482-family-protein
MNTLFALVLTVISLNGESQDVVIDVYDNQQQCQAAAVEQNVNGECWPVEGIIRNGEIPTSL
>NZ_CP012165.1|WP_032654607.1|3545266_3545425_+|hypothetical-protein
MKKECGYCRKPFEAGKEVKRTLLYFCGNNLARKEKEYCSKQCAEKDQMAHEA
>NZ_CP012165.1|WP_032665953.1|3545510_3545798_+|hypothetical-protein
MEIVKVELNLKAINKSIALFNCDKKVSGLIHTTENGETTVVLDGGYVLDSFDCPHCAIEAISLLAVKINDGERSGHGSYRQHKRNFMERAFITVH
>NZ_CP012165.1|WP_044596224.1|3545920_3548989_+|PD-(D/E)XK-nuclease-like-domain-containing-protein
MTNTNPVFLVRRAKKQSGQPDAVLWCSEDFETANATLDYLLLKSGRKFKDYYKAVATNFPVVNELPPEGEISFTFCDYYQLDKGKMNWEQIPGVSLPEHPATQKAEMAEATVVNGVDASTGEIVDEQAFNEADAVPPTNSDLKIDDGDDENTRYPIVQMSFRMQLLSQLTSDELRYHLTQAEYQEISTLEMDTDNGYVQNLLLAAASVEKIQTLDMPFLWKYTRAVRDVFDMEKRHELSLVLKFTQVWAETSHLDRGILTKEWAKGNRISAVQRTDSGTNADGGYVTDRGEGAHHTLDTLDLEIACALLPMDFNPHEIPGSVLRRAKEIVAKKEEPWKSWSNILRNQPGVLAVNRTAIFNLVRIAPENIHKTPAAHLEFVNRTMTTNFNSTTELMPLPSAAPVISREDVDKQLAAERGEFVEGISDPTDPKWETTHRMATTTHEENLQRIREEGARRRAEEVKEQPEITSMGNGMFSIEGLLNQSASNEVVKTENAAETTSDVQMETTQPEKVENTDPVQPGEGADAADTQAVTVAPAEILAAAAPSLTNQEQAGVHQKTDSVSHERPEPAQSEPKSAQNEPEVHQEEPAVEYPTYFEPGRYEGLPNEVYHAANGISSTQVKDARVSLMYFNARHVEKTIVKERSAVLDMGNLVHALALQPEQLDAEFSIEPVIPEGAFTTTATLRSFIDEHNASLPALLSADDIKVLLEEYNATLPVQVPLGASLEETAQNYMTLPANFQRIDADQKQTATAMKACIKEYNATLPTPVKTSGSRDALLEQLAIINPDMVAQEAQKPQLLKVSGTKADLIQAVKTVKPDAVFADELLDAWRDNPEGKVLVTRQQLSTALNIQKALLAHPTASMLLTHPSRAVEVSYFGFDEETGLEVRVRPDLEIDLDGVRIGADLKTISMWNVKQESLRARLHREIIDRDYHLSAAMYCETAALDQFFWIFVNKDENYHWIAIIEASADLLELGMLEYRKAMRAIATGFDTGEWPAPIIDDYTDELNDFDLRRLEALRTQA

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Crispr_ID: NZ_CP012165_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012165_5

3658260-3658357

Orphan

Consensus_repeat	Method
TGCACTACCCCCTAGTGAATCTCCTGCACTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012165_5

>merge|NZ_CP012165|5|3658260-3658357|CRISPRCasFinder
TGCACTACCCCCTAGTGAATCTCCTGCACTACGGGGTGAATCTGCTGCACCAGGTAGTGAACGATTTGCACTACCCCCTAGTGAATCTCCTGCACTAC

>NZ_CP012165|5|5|3658260-3658357|CRISPRCasFinder
TGCACTACCCCCTAGTGAATCTCCTGCACTAC	GGGGTGAATCTGCTGCACCAGGTAGTGAACGATT
TGCACTACCCCCTAGTGAATCTCCTGCACTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012165.1\|WP_023296234.1\|3661015_3661423_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012165.1\|WP_071886186.1\|3652166_3652436_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227774
NZ_CP012165.1\|WP_032610617.1\|3654726_3655509_-\|antitermination-protein	unknown	unknown	gnl\|CDD\|367572
NZ_CP012165.1\|WP_000050710.1\|3662403_3662613_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012165.1\|WP_017384387.1\|3653340_3653730_-\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|374892
NZ_CP012165.1\|WP_032610624.1\|3660305_3660695_+\|S24-family-peptidase	unknown	unknown	gnl\|CDD\|119397
NZ_CP012165.1\|WP_032610627.1\|3662129_3662414_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012165.1\|WP_071886177.1\|3649100_3649691_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012165.1\|WP_032610626.1\|3661612_3662026_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012165.1\|WP_032610629.1\|3662567_3663740_+\|DUF3596-domain-containing-protein	unknown	unknown	gnl\|CDD\|271189
NZ_CP012165.1\|WP_032610625.1\|3660801_3661023_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012165.1\|WP_023296237.1\|3659066_3659759_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP012165.1\|WP_032610613.1\|3652443_3653073_-\|glycoside-hydrolase-family-19-protein	unknown	unknown	gnl\|CDD\|225720
NZ_CP012165.1\|WP_017384386.1\|3653072_3653351_-\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|368449
NZ_CP012165.1\|WP_032610621.1\|3656912_3657794_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181180
NZ_CP012165.1\|WP_048859479.1\|3658697_3658913_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP012165.1\|WP_032610607.1\|3649672_3651130_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|224137
NZ_CP012165.1\|WP_032610608.1\|3651218_3651917_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012165.1\|WP_032610619.1\|3655536_3656916_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273206
NZ_CP012165.1\|WP_032610623.1\|3659930_3660224_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP012165.1\|WP_071886186.1\|3652166_3652436_-\|hypothetical-protein	gnl\|CDD\|227774	COG5487, COG5487, Small integral membrane protein [Function unknown].	0.00570507
NZ_CP012165.1\|WP_032610617.1\|3654726_3655509_-\|antitermination-protein	gnl\|CDD\|367572	pfam03589, Antiterm, Antitermination protein.	4.50523e-27
NZ_CP012165.1\|WP_017384387.1\|3653340_3653730_-\|phage-holin-family-protein	gnl\|CDD\|374892	pfam16931, Phage_holin_8, Putative phage holin.	1.91362e-33
NZ_CP012165.1\|WP_032610624.1\|3660305_3660695_+\|S24-family-peptidase	gnl\|CDD\|119397	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response.	2.49372e-10
NZ_CP012165.1\|WP_023296237.1\|3659066_3659759_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	1.88177e-29
NZ_CP012165.1\|WP_032610613.1\|3652443_3653073_-\|glycoside-hydrolase-family-19-protein	gnl\|CDD\|225720	COG3179, COG3179, Predicted chitinase [General function prediction only].	1.88693e-68
NZ_CP012165.1\|WP_017384386.1\|3653072_3653351_-\|phage-holin-family-protein	gnl\|CDD\|368449	pfam05449, Phage_holin_3_7, Putative 3TM holin, Phage_holin_3. This is a family of putative proteobacterial phage three-transmembrane-domain holins.	8.0904e-19
NZ_CP012165.1\|WP_032610621.1\|3656912_3657794_-\|ATP-binding-protein	gnl\|CDD\|181180	PRK07952, PRK07952, DNA replication protein DnaC; Validated.	2.03544e-35
NZ_CP012165.1\|WP_048859479.1\|3658697_3658913_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	9.71981e-20
NZ_CP012165.1\|WP_032610607.1\|3649672_3651130_-\|glycosyl-transferase	gnl\|CDD\|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	2.01178e-09
NZ_CP012165.1\|WP_032610629.1\|3662567_3663740_+\|DUF3596-domain-containing-protein	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	8.17965e-31
NZ_CP012165.1\|WP_032610619.1\|3655536_3656916_-\|AAA-family-ATPase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	1.03394e-105

>NZ_CP012165.1|WP_032610621.1|3656912_3657794_-|ATP-binding-protein
MLSIKQREEREALVAKREGLREELAFAVEHKKPWQWGSWESGEVHAAACEKHGGYQRISLTGKAYRGVENVKHSQCPECVKEELAGIESNLHALRVADLLDNAGIARRFETCEFDNYQAINQDAAKNLSSCRRYASSWPERLNAGTGLVMTGNCGTGKNHLAVSMAKSIIRDHLANVEITDVMRLTRSVKSTWRHNAEMTEEDVIERFASLDLLIIDEVGVQFGSPTEMTILQEIINARYESILPTILISNLTFDQLKETIGERIVDRVTDGGRNRLAFGWGSFRAIASGVVA
>NZ_CP012165.1|WP_032610619.1|3655536_3656916_-|AAA-family-ATPase
MTPVWKNEDLEGAVIGAIFLRGADPEVLDILSRVPATAFSVPQYREIYTGICRQARGAGVIDPVLLCENMPKHSAIIMDSSRIAWAKSALVSYVATLERNAAVRDAEAVIERALADLRSAHNGDAALSAFRAAQNSIAAISLEEKTVQPVHIDDILPAVVDRVDARNRGLEEARSLMTGIEELDAKTGGIEPTDLVFIAARPSMGKTELALDIIDKVSEQGRGVLFFSMEMPNIQIGERMVSAAGGMSVSRLKRAADFDDEDWARLTDGVGRLTGRSIWMVDSTDLTVDQIQQISTRLQMAHPEIALVVVDYLALIKIESTARYDLAVGEVSKGLKRLAKSNKTPVLALSQLSRGVESRPNKRPMNSDLKNSGEIEADADLIMMLYRDEVYNPKSPAKGIAEINVTKQRNGELGTIYRRFYNGHFLPIDQELAKQRSAPQQKAHTRRYSKERHSSNADY
>NZ_CP012165.1|WP_032610617.1|3654726_3655509_-|antitermination-protein
MKLEASLKHFSPQGMNISDDVKGTSPDRLTGTDVMAAIGTTSSRARFGLAAFFGKAGISKTDEQLAVQALARYAMDVAPKNVRKAAGGQFGWCMQMLAQFAFADYSRSAATSVTCHSCSGTGFISGNEDVVKHPGIFDADGAEVVAPKIKNELVKRVCETCGGKKVILARCRCGGKGEVLDRKATKERGAPVFKTCERCSGNGFSAISSATVHRAILKRLPDLHQSSWSRNWKPFYEMLVDTLRQWERHAAVEFEKATTY
>NZ_CP012165.1|WP_017384387.1|3653340_3653730_-|phage-holin-family-protein
MSDPLTGTGAVLGGGLLGSVLYGVFTHTDFGVVFGAFGGAVFYVATATNLSRARLAAYFLTSFIVGVLGAGLIGSLLNAASHYEKPLDALGAVILSALCIKILTYLNNQDLNNVFKFFSRLRGGGGNGN
>NZ_CP012165.1|WP_017384386.1|3653072_3653351_-|phage-holin-family-protein
MVIDPSAVFNAFICAAIVIVLMFYQRHGARHRPFISVLAYITVLVYAAIPLQFIFGLYRDSSWLVVVANILIFAAILKVRGNMARLVDRLRH
>NZ_CP012165.1|WP_032610613.1|3652443_3653073_-|glycoside-hydrolase-family-19-protein
MNQTQFQRAAGISAGLAARWFPHIDAAMKEYGITAPLDQAMFIAQMGHESTRFTRLVESLNYAVENLVPTFGSHRITQQQAAALGRTATQPANQKAIANLVYGGEWGKEHLGNQVAGDGWKYRGRGLKQVTGLSNYRSCGHALKLDLVTHPDLLEQDEYAARSAAWFYSSRGCLLHSGDVERVTLLINGGRNGLDKRRALFNLAKSVLV
>NZ_CP012165.1|WP_071886186.1|3652166_3652436_-|hypothetical-protein
MGIETIIGLVALVISAIAGAFGMGHIRGTSKAEAKADQQRTEDNAAATVTAAERRVEATKEASNVQQTVNHMPGDDVDRELRTNWTRKG
>NZ_CP012165.1|WP_032610608.1|3651218_3651917_+|hypothetical-protein
MSREGSLDLLQEVEENLDIMKQTQNIKSVKVKAILENLRSSLEYLANDTYDKYNDASPADKRPNIYFPYGKKTFVDNFFIKILKVNPPNSSPLYKVFTSIQDYHTGEKWLEMMCNLTNEVKHRQPIPLREDNSVKDLSISVDGFGLIKAGSNANILLQNNYVNGQKLEDFTFKNGNLQRSGNGIPLNIVITEEKKIRFHGNDYEVIPFIELCLSKIRPLIIEAYDELDNISI
>NZ_CP012165.1|WP_032610607.1|3649672_3651130_-|glycosyl-transferase
MQVTIDGVPYAPACAIASRIGIAITTHNRADVLKRAIEQHQKHLPAGALVVVVVDGSKPTAVVPDGVQLLRHETSLGIVASKNASLTALMDAGCEHLFLWDDDAWPIADNWHLPYIESPEPHLAYQFLDLAGTNKLNDMSVLYRDDKHIAYTGQRGVMLYYHRSAIEKVGGFDPVYGRGMYEHSDLALRIHNAGLTTWAYADVLGSDKLIHSLDEHEAVERSVPRPDRQALVERNVKIHNERRDTGFTGYVEYRQQRDVVITTLLTSQPDPQRGTKMAASPDMLSKWAASLRQCGRIALVDELLTAPADVELYLVPDVKMNVYFRRWLHIWQHLREHPEYRFVWCTDGTDVEMLRAPWEEMEAGKVYVGSEPKTYADNWAKQNHPERIYQEFIEAHRNDVMLNAGLLGGTRADVMAFAHSIIRLYYRIESYRFWKKEQAGAAVGDMLAFGIVAKSFGDRIVTGPRIHTVFKSEGVGKEYAFWKHK
>NZ_CP012165.1|WP_071886177.1|3649100_3649691_-|hypothetical-protein
MLETQVKFVVVGHHSRIDPAHRLATMLDAHLLIDYSNHGANWNHRRALEWAAEQTCRVVVLEDDALPVHRFTEMVTDWLARCPDDLLSFYLGTGRPPQYQMQIAERLIIADKARYEFISFPRLIHGVCYSVPPHCISRVLSRWDSNKPADFAVGDAWGGSVVYPCYSLVDHADGEPVESHPDSAPRTERRRAWRLA
>NZ_CP012165.1|WP_048859479.1|3658697_3658913_-|helix-turn-helix-domain-containing-protein
MAKAVYVAGGQSSLAKKVGVTQGAVWKWVRGIKKVSPVHAVAVSNAVNGVVKPHELRPDLPTLFPHPGNEV
>NZ_CP012165.1|WP_023296237.1|3659066_3659759_+|helix-turn-helix-transcriptional-regulator
MNTLAERLRLAMAHAGATQSQLAHRVGVSQGAIQKLTSGKAQSSGKIVDIAKALDVDPIWLSTGEGTMGPAKTPEQRMFGIDPWDKQTPLEDDEVEVPYLKDIEFACGDGSALNDDYNGKKLRFSKATLRKVGANSDGDGVLCFAAHGNSMEPVIADGSTVAINCHDKRIVDGKIYGINQGGWKRLKILYRSGPDKVTIRSYNSDEYPDEEVDMDSLEVLGRLFWVSTIF
>NZ_CP012165.1|WP_032610623.1|3659930_3660224_+|hypothetical-protein
MNTTSQPNPASQAFDIHAKLKAANSHWIYLRAAQPHQNDFDYEFNTTFIDGLEFAIYERVDNYFVLVDFFKSYEEACDDAKKIIDDHPDIKKMFSVS
>NZ_CP012165.1|WP_032610624.1|3660305_3660695_+|S24-family-peptidase
MHNLLNPINKPVAYPRELFVDEKGKYTPGEIMTCQMGGDSMQPTIQPCELIAFADCGGKVSEPGIYVFTRDVFGRPCVFVKRVEPMPDGSLVIISDNHHYETFTLDVDEQSDMQVHGRVIASMTMRRFV
>NZ_CP012165.1|WP_032610625.1|3660801_3661023_+|hypothetical-protein
MGVLKRQDIQEVNIKAEKLSGLTQTLFECHDKLDRFQLKTICALVYDLAAEIHGWTEKEEEIVMGLEEEKRNG
>NZ_CP012165.1|WP_023296234.1|3661015_3661423_+|hypothetical-protein
MDKLIETYRRRILKAALLRHQRKTGSNCLVIKLNKGGINTVELTEILLDGLLRKFERLAISEYGNVEGVKAIKGIYSSAVDVNGSGEFLTDSGKELIDELISELVEFVKKQKVEAPKTEGHEMGGSDGTYSDTNS
>NZ_CP012165.1|WP_032610626.1|3661612_3662026_+|hypothetical-protein
MNDKRTVSMIDLALQKHDTPVGPLFVAVRHGRIKKCFTQDTAIRYLAFFMTTEAFERSGFPQRHPRVRIDRDDREVWRDGETKAEYLAAHQRCVRRLRRILACKREMEKWCEKWDAMHDRFVKEVDALQAIKPVGVK
>NZ_CP012165.1|WP_032610627.1|3662129_3662414_+|hypothetical-protein
MNKPVSEIIKRWTRLATEAKQLGHTTIPVDPENMLMVVGDLPDSEDYQAAIDFLRKRAASELDGGFRAHHNALIYAANELENAQAFGREVGHES
>NZ_CP012165.1|WP_000050710.1|3662403_3662613_+|hypothetical-protein
MSLDCVPLSTYCRDAGETVEAVNKRIQRGLWKEGVHVLKVDGVKERWIDLTEVSKWARKNKDHYLSQEE
>NZ_CP012165.1|WP_032610629.1|3662567_3663740_+|DUF3596-domain-containing-protein
MGKKEQGSLSLPRGVTIRQHKTGDTLVITFTYKGVLCREPLSRMEANARGVKYAERLLGEIQNQIAGGTFDYAKYFPTSKKLELFGVVKKTKNIKSYLDEYLKICQNRNLSPSTINGYEKCLSALSALHKLHVSELTPAVLKNWIASRKTKLKTTRNNLSFLRSAIDEAVTDGLLTINPVTLVSASRYHVIDSSPSADDYEVDPFTPAETLAIYQSCRYPEWENLFRFAFNTGLRSSELCALRWLDLDTIANTAHVQAASVVGVLKGTKTKAGTRKVELNSEALAALQAQKQYTFMKSEFIFSDPKTGEPWANADAIRKKAWVPTLKKAGVRYRNPYQTRHTFATKHISQGVNLFWLAGQMGHKGPEMIFRNYGKYLAEYDGKTAISAAL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012165_5	5.1\|3658292\|34\|NZ_CP012165\|CRISPRCasFinder	3658292-3658325	34	MH178096	Aeromonas phage AsXd-1, complete genome	10853-10886	0	1.0
NZ_CP012165_3	3.1\|2107700\|38\|NZ_CP012165\|CRISPRCasFinder	2107700-2107737	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947

1. spacer 5.1|3658292|34|NZ_CP012165|CRISPRCasFinder matches to MH178096 (Aeromonas phage AsXd-1, complete genome) position: , mismatch: 0, identity: 1.0

ggggtgaatctgctgcaccaggtagtgaacgatt	CRISPR spacer
ggggtgaatctgctgcaccaggtagtgaacgatt	Protospacer
**********************************

2. spacer 3.1|2107700|38|NZ_CP012165|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cagacgcaagatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
********..****************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

410190 : 451463

Lysinibacillus_phage(20.0%)

integrase,protease,transposase

attL 410602:410616|attR 456410:456424

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032608281.1\|410190_411480_-\|transposase	ISL3-like element ISPpu12 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.0e-84	40.0
410602:410616	attL	NA	NA	NA	NA
WP_032608282.1\|411501_412014_-	signal peptidase II	NA	NA	NA	NA
WP_004364974.1\|412017_412914_-	cation transporter	NA	NA	NA	NA
WP_029396360.1\|413009_413417_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_016807974.1\|413865_414336_+	DUF3577 domain-containing protein	NA	NA	NA	NA
WP_016807973.1\|414396_414933_+	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	9.5e-56	64.8
WP_016807972.1\|414997_415240_+	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_004115558.1\|415223_415472_+	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_044596300.1\|415608_416274_+	PilL N-terminal domain-containing protein	NA	NA	NA	NA
WP_032608284.1\|416270_417029_+	hypothetical protein	NA	NA	NA	NA
WP_032608285.1\|417040_417763_+	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA
WP_032608286.1\|417741_418377_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_032608287.1\|418382_418916_+	integrating conjugative element protein	NA	NA	NA	NA
WP_032608288.1\|418915_419488_+	restriction endonuclease	NA	NA	NA	NA
WP_032608290.1\|419498_419987_+	hypothetical protein	NA	NA	NA	NA
WP_032608291.1\|419979_422079_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_006785966.1\|422071_422830_+	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA
WP_032610154.1\|422920_423268_-	hypothetical protein	NA	NA	NA	NA
WP_032608292.1\|423452_423800_+	hypothetical protein	NA	NA	NA	NA
WP_003029734.1\|423799_424042_+	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA
WP_006785968.1\|424077_424464_+	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA
WP_004115534.1\|424476_424833_+	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA
WP_004115533.1\|424829_425489_+	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA
WP_006785972.1\|425488_426439_+	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA
WP_032608294.1\|426428_427931_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA
WP_016151320.1\|427941_428310_+	hypothetical protein	NA	NA	NA	NA
WP_032608297.1\|428309_428720_+	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA
WP_032608298.1\|428719_431578_+	conjugative transfer ATPase	NA	NA	NA	NA
WP_032608299.1\|431574_431952_+	hypothetical protein	NA	NA	NA	NA
WP_032608300.1\|432036_432981_-	Abi family protein	NA	NA	NA	NA
WP_127341290.1\|433190_433484_-	hypothetical protein	NA	NA	NA	NA
WP_087744867.1\|433732_434853_-\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	3.9e-51	42.8
WP_071886161.1\|434886_435741_-	FRG domain-containing protein	NA	NA	NA	NA
WP_032608304.1\|435949_436348_+	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA
WP_032608305.1\|436344_437337_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA
WP_032608306.1\|437336_438812_+	integrating conjugative element protein	NA	NA	NA	NA
WP_004115513.1\|438822_439161_+	hypothetical protein	NA	NA	NA	NA
WP_029593071.1\|439163_440687_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA
WP_004115509.1\|440711_441113_-	hypothetical protein	NA	NA	NA	NA
WP_077791480.1\|441313_441829_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	9.2e-32	49.6
WP_029591133.1\|441831_443103_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	8.1e-146	60.5
WP_028016388.1\|444453_445422_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_071886162.1\|445803_446298_+	hypothetical protein	NA	NA	NA	NA
WP_048859499.1\|446360_447032_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_006786007.1\|448001_448901_+\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_032608310.1\|448967_449585_-	recombinase family protein	NA	NA	NA	NA
WP_010791757.1\|449780_451463_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
456410:456424	attR	NA	NA	NA	NA

DBSCAN-SWA_2

458068 : 487499

uncultured_Caudovirales_phage(66.67%)

integrase,transposase

attL 454806:454822|attR 476258:476274

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
454806:454822	attL	NA	NA	NA	NA
WP_000427623.1\|458068_459073_+\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_074422537.1\|459254_459431_-\|integrase	integrase	NA	NA	NA	NA
WP_003100858.1\|459466_459793_-	hypothetical protein	NA	NA	NA	NA
WP_003465043.1\|460047_460404_-	cupin domain-containing protein	NA	NA	NA	NA
WP_032608318.1\|461621_462590_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.2e-45	36.9
WP_002718009.1\|462771_463332_+	chlorite dismutase family protein	NA	NA	NA	NA
WP_000427614.1\|465171_466176_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_001549890.1\|467044_467377_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_025801347.1\|467382_468096_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	5.1e-97	73.4
WP_001549888.1\|468153_468582_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	70.7
WP_044596299.1\|468631_469915_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	1.3e-175	74.6
WP_001549886.1\|470010_470364_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	5.9e-22	57.1
WP_001549885.1\|470847_472326_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.6e-198	74.0
WP_004118529.1\|472344_473172_+	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	4.9e-51	42.3
WP_001549953.1\|473243_474440_-	MFS transporter	NA	NA	NA	NA
WP_004118534.1\|474968_475343_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	4.5e-28	56.0
WP_011977829.1\|475617_476766_+	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	1.7e-123	65.9
476258:476274	attR	NA	NA	NA	NA
WP_004118538.1\|477119_477452_-	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_004118540.1\|477583_478141_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	8.4e-39	47.2
WP_004118541.1\|478301_481310_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	62.8
WP_021443905.1\|481621_481969_-	mercuric resistance transcriptional repressor protein MerD	NA	NA	NA	NA
WP_011405610.1\|481965_482604_-	organomercurial lyase MerB	NA	NA	NA	NA
WP_011405609.1\|482684_483338_-	phenylmercury resistance protein MerG	NA	NA	NA	NA
WP_011405608.1\|483373_485083_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.3e-34	27.1
WP_011405607.1\|485270_485546_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001294663.1\|485559_485910_-	mercuric transport protein MerT	NA	NA	NA	NA
WP_032608321.1\|485981_486416_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_000427623.1\|486494_487499_+\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1290055 : 1337367

Cronobacter_phage(36.36%)

tail,terminase,holin,head,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032608689.1\|1290055_1290286_-	hypothetical protein	G8C7S3	Escherichia_phage	5.7e-34	94.7
WP_032608690.1\|1290294_1290534_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	2.8e-28	74.4
WP_032608691.1\|1290511_1290823_-	DUF2591 family protein	E5AGF4	Erwinia_phage	1.0e-14	47.4
WP_032608692.1\|1290822_1291041_-	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	4.6e-17	63.9
WP_127341288.1\|1291319_1291520_-	hypothetical protein	NA	NA	NA	NA
WP_032608697.1\|1291516_1291735_-	hypothetical protein	NA	NA	NA	NA
WP_032608698.1\|1291731_1292283_-	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	2.2e-55	58.3
WP_164088318.1\|1292279_1292447_-	hypothetical protein	G8C7S7	Escherichia_phage	5.6e-23	92.7
WP_032608699.1\|1292443_1292872_-	hypothetical protein	M9NYX4	Enterobacteria_phage	1.5e-72	95.1
WP_032608700.1\|1292868_1293549_-	YqaJ viral recombinase family protein	M9NZE1	Enterobacteria_phage	6.9e-128	95.1
WP_032608701.1\|1293545_1294391_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	4.5e-68	55.4
WP_032608703.1\|1294409_1294694_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.9e-47	92.6
WP_000607101.1\|1294766_1294976_-	cell division protein FtsZ	M9NZE2	Enterobacteria_phage	3.9e-34	97.1
WP_023294196.1\|1294972_1295131_-	hypothetical protein	G8C7T3	Escherichia_phage	5.8e-22	96.2
WP_044596295.1\|1295127_1295322_-	hypothetical protein	NA	NA	NA	NA
WP_042862569.1\|1295663_1296137_+	hypothetical protein	NA	NA	NA	NA
WP_032608706.1\|1296643_1296841_+	hypothetical protein	G8C7T7	Escherichia_phage	1.0e-23	92.2
WP_025760147.1\|1296999_1297356_-	hypothetical protein	G0ZNF1	Cronobacter_phage	7.7e-54	90.7
WP_032608707.1\|1297473_1297899_-	hypothetical protein	NA	NA	NA	NA
WP_032608708.1\|1297895_1298354_-	type II toxin-antitoxin system HicB family antitoxin	K7PJX6	Enterobacterial_phage	1.8e-39	49.3
WP_032608710.1\|1298350_1298596_-	type II toxin-antitoxin system HicA family toxin	K7PH44	Enterobacterial_phage	4.4e-16	50.0
WP_016042178.1\|1298811_1299501_-	helix-turn-helix transcriptional regulator	G8C7U1	Escherichia_phage	2.2e-126	100.0
WP_016042179.1\|1299611_1299839_+	helix-turn-helix domain-containing protein	G8C7U2	Escherichia_phage	4.1e-37	100.0
WP_001514165.1\|1299868_1300435_+	hypothetical protein	NA	NA	NA	NA
WP_013095956.1\|1300523_1300691_+	hypothetical protein	Q76H53	Enterobacteria_phage	2.1e-14	78.2
WP_032608714.1\|1300677_1301763_+	replication protein	E5AGE9	Erwinia_phage	2.3e-85	45.6
WP_032608716.1\|1301759_1303133_+	replicative DNA helicase	E5AGF0	Erwinia_phage	4.9e-165	62.7
WP_059555724.1\|1303122_1303437_+	hypothetical protein	I6PDF7	Cronobacter_phage	9.2e-11	42.3
WP_032608717.1\|1303433_1303868_+	hypothetical protein	A0A0A6Z565	Enterobacter_phage	1.4e-09	40.5
WP_032608719.1\|1303864_1304050_+	hypothetical protein	K7P7P5	Enterobacteria_phage	1.6e-26	91.8
WP_032608720.1\|1305152_1305608_+	hypothetical protein	K7P7B8	Enterobacteria_phage	2.9e-53	66.9
WP_032608721.1\|1305607_1305778_+	NinE family protein	K7P7K0	Enterobacteria_phage	2.4e-21	92.9
WP_032608722.1\|1305770_1306406_+	recombination protein NinG	M9NYX8	Enterobacteria_phage	1.1e-92	85.4
WP_032608723.1\|1306515_1307205_+	antiterminator	I6PDF8	Cronobacter_phage	1.5e-53	48.9
WP_032608724.1\|1307481_1307883_+	membrane protein	NA	NA	NA	NA
WP_001514184.1\|1307879_1308155_+\|holin	phage holin family protein	S4TNV9	Salmonella_phage	5.8e-09	41.0
WP_032608725.1\|1308158_1308599_+	lysozyme	A0A0M4R365	Salmonella_phage	4.4e-51	71.1
WP_044596275.1\|1308595_1308982_+	DUF2570 domain-containing protein	A0A2H4FNE5	Salmonella_phage	5.5e-05	44.0
WP_032608726.1\|1309278_1309797_+	Rha family transcriptional regulator	Q38450	Enterobacteria_phage	2.1e-92	98.3
WP_003859853.1\|1310392_1310623_+	hypothetical protein	NA	NA	NA	NA
WP_032608731.1\|1310842_1311493_+	hypothetical protein	G8C7P2	Escherichia_phage	9.2e-114	99.5
WP_032608733.1\|1311489_1313052_+\|terminase	terminase	G8C7P3	Escherichia_phage	8.8e-304	93.2
WP_032608735.1\|1313080_1314538_+	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	9.8e-156	60.4
WP_063612943.1\|1314464_1315463_+\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	2.1e-112	68.4
WP_032608737.1\|1315497_1315914_+	hypothetical protein	NA	NA	NA	NA
WP_032608738.1\|1315985_1317374_+	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	3.3e-153	59.2
WP_017693196.1\|1317377_1317812_+	hypothetical protein	F1C5E0	Cronobacter_phage	1.4e-49	72.2
WP_006808954.1\|1317822_1318920_+	hypothetical protein	F1C5E1	Cronobacter_phage	7.6e-161	77.5
WP_032608740.1\|1318929_1319295_+	hypothetical protein	NA	NA	NA	NA
WP_006808952.1\|1319297_1319678_+	hypothetical protein	F1C5E2	Cronobacter_phage	7.0e-29	54.5
WP_032608741.1\|1319677_1319851_+	hypothetical protein	Q5G8X7	Enterobacteria_phage	2.7e-12	50.9
WP_032608742.1\|1319850_1320201_+	hypothetical protein	G0ZNE2	Cronobacter_phage	8.9e-39	66.1
WP_032608743.1\|1320203_1320668_+	hypothetical protein	A0A2P1MXA4	Escherichia_phage	1.2e-30	45.5
WP_032608745.1\|1320664_1321048_+	hypothetical protein	F1C5E4	Cronobacter_phage	2.3e-40	64.6
WP_052238023.1\|1321147_1321642_+	HNH endonuclease	G0ZNE5	Cronobacter_phage	1.0e-32	50.7
WP_000427623.1\|1321823_1322828_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_032608746.1\|1323091_1323835_+	Ig domain-containing protein	F1C5E5	Cronobacter_phage	2.2e-71	81.6
WP_032608748.1\|1323892_1324582_+	hypothetical protein	G0ZNE7	Cronobacter_phage	3.5e-55	51.1
WP_032608750.1\|1324576_1324864_-	hypothetical protein	NA	NA	NA	NA
WP_032608752.1\|1324979_1327886_+\|tail	tail protein (tape measure)	F1C5E9	Cronobacter_phage	1.3e-127	39.0
WP_032608753.1\|1327885_1328383_+	hypothetical protein	F1C5F0	Cronobacter_phage	3.7e-86	89.1
WP_015571561.1\|1328382_1328853_+	hypothetical protein	F1C5F1	Cronobacter_phage	1.0e-66	80.1
WP_032608754.1\|1328866_1329232_+	C40 family peptidase	F1C5F2	Cronobacter_phage	4.6e-62	90.8
WP_032608755.1\|1329218_1331696_+\|tail	phage tail protein	F1C5A7	Cronobacter_phage	0.0e+00	92.5
WP_032608756.1\|1331754_1333971_+	hypothetical protein	F1C5A8	Cronobacter_phage	1.0e-39	61.4
WP_032608758.1\|1334504_1334891_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.3e-17	56.6
WP_032608759.1\|1334978_1336451_-	glucosyltransferase domain-containing protein	NA	NA	NA	NA
WP_032608760.1\|1336443_1337367_-	glycosyltransferase family 2 protein	U5P087	Shigella_phage	1.4e-160	91.8

DBSCAN-SWA_4

2600789 : 2653546

Erwinia_phage(24.32%)

lysis,tail,plate,terminase,holin,head,integrase,portal,capsid,protease

attL 2613455:2613469|attR 2654831:2654845

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022651351.1\|2600789_2601836_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-19	29.2
WP_017384219.1\|2602088_2602850_+	YciK family oxidoreductase	NA	NA	NA	NA
WP_023314251.1\|2602846_2603437_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_003856794.1\|2603473_2604349_-	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_003856793.1\|2604446_2605067_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_023314252.1\|2605063_2605957_-	5'-3' exoribonuclease	NA	NA	NA	NA
WP_071524153.1\|2606084_2606129_+	trp operon leader peptide	NA	NA	NA	NA
WP_032609352.1\|2606223_2607786_+	anthranilate synthase component 1	NA	NA	NA	NA
WP_032609354.1\|2607785_2609381_+	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	1.2e-50	37.3
WP_032609355.1\|2609384_2610743_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	5.0e-37	41.0
WP_003856780.1\|2610753_2611947_+	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_032609356.1\|2611946_2612756_+	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_032609358.1\|2612930_2614142_+	selenium metabolism membrane protein YedE/FdhT	NA	NA	NA	NA
2613455:2613469	attL	NA	NA	NA	NA
WP_003856774.1\|2614138_2614372_+	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA
WP_003856769.1\|2614658_2615291_-	outer membrane protein OmpW	NA	NA	NA	NA
WP_032609359.1\|2615573_2615978_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_003856765.1\|2616003_2616747_+	UPF0259 family protein	NA	NA	NA	NA
WP_023324803.1\|2616760_2617300_+	septation protein A	NA	NA	NA	NA
WP_032609360.1\|2617480_2619667_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_023314256.1\|2619765_2620161_+	acyl-CoA thioester hydrolase YciA	NA	NA	NA	NA
WP_017384230.1\|2620199_2620928_-	TonB system transport protein TonB	NA	NA	NA	NA
WP_003856755.1\|2621149_2621446_+	YciI family protein	NA	NA	NA	NA
WP_032609363.1\|2621589_2622066_-	hypothetical protein	NA	NA	NA	NA
WP_032609364.1\|2622122_2623013_-	hypothetical protein	NA	NA	NA	NA
WP_032609365.1\|2623129_2623351_-	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	6.0e-25	69.9
WP_032609366.1\|2623427_2624597_-	phage late control D family protein	A0A218M4J7	Erwinia_phage	4.0e-160	76.9
WP_032609367.1\|2624593_2625058_-\|tail	phage tail protein	A0A218M4I2	Erwinia_phage	4.2e-60	72.1
WP_032609369.1\|2625070_2627518_-\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	4.6e-283	72.1
WP_032609370.1\|2627507_2627630_-\|tail	GpE family phage tail protein	O80316	Escherichia_phage	1.0e-13	92.3
WP_032609371.1\|2627662_2627965_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.4e-27	73.6
WP_032609372.1\|2628021_2628540_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	8.5e-78	79.7
WP_032609374.1\|2628552_2629746_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	8.3e-185	81.1
WP_032609376.1\|2630120_2630636_-\|tail	tail fiber assembly protein	F1BUK2	Cronobacter_phage	4.4e-18	36.8
WP_032609378.1\|2632491_2633022_-\|tail	phage tail protein I	Q37841	Escherichia_phage	1.5e-90	86.4
WP_032609381.1\|2633014_2633923_-\|plate	baseplate assembly protein	Q6K1H4	Salmonella_virus	3.2e-136	83.1
WP_023338715.1\|2633928_2634279_-	GPW/gp25 family protein	A0A0M4RE59	Salmonella_phage	1.5e-38	69.8
WP_032609382.1\|2634275_2634917_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	1.6e-97	83.1
WP_032609384.1\|2635048_2635780_+	UPF0489 family protein	NA	NA	NA	NA
WP_032609386.1\|2635849_2636299_-	phage virion morphogenesis protein	O80313	Escherichia_phage	2.6e-51	73.5
WP_032609387.1\|2636291_2636759_-\|tail	phage tail protein	A0A218M4K6	Erwinia_phage	6.5e-61	71.6
WP_072163335.1\|2636721_2636967_-\|holin	holin	S4TNY4	Salmonella_phage	1.0e-28	77.8
WP_038421124.1\|2636854_2637280_-\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	9.2e-46	70.1
WP_032609391.1\|2637276_2637786_-	lysozyme	A0A218M4K3	Erwinia_phage	1.7e-78	86.9
WP_032609392.1\|2637769_2637991_-	hypothetical protein	A0A218M4L5	Erwinia_phage	7.1e-26	74.0
WP_032609394.1\|2637981_2638185_-\|tail	tail protein X	A0A218M4L8	Erwinia_phage	6.1e-24	76.1
WP_032609395.1\|2638184_2638691_-\|head	head completion/stabilization protein	O80306	Escherichia_phage	7.1e-61	70.2
WP_038421123.1\|2638790_2639546_-\|terminase	terminase endonuclease subunit	Q6K1I5	Salmonella_virus	7.5e-75	65.3
WP_032609400.1\|2639549_2640617_-\|capsid	phage major capsid protein, P2 family	S4TUA6	Salmonella_phage	3.9e-170	83.3
WP_032609401.1\|2640672_2641527_-\|capsid	GPO family capsid scaffolding protein	S4TP53	Salmonella_phage	1.0e-112	72.2
WP_032609402.1\|2641693_2643463_+\|terminase	terminase ATPase subunit family protein	A0A218M4M1	Erwinia_phage	1.1e-302	85.7
WP_032609403.1\|2643464_2644490_+\|portal	phage portal protein	Q6K1J0	Salmonella_virus	2.1e-168	82.9
WP_032609405.1\|2644817_2646017_+	ATP-binding protein	A0A0P0IKU8	Acinetobacter_phage	3.4e-53	32.6
WP_032609407.1\|2646019_2646538_+	hypothetical protein	NA	NA	NA	NA
WP_128751144.1\|2647219_2647777_-	hypothetical protein	NA	NA	NA	NA
WP_032609411.1\|2647921_2648206_-	hypothetical protein	NA	NA	NA	NA
WP_032609413.1\|2648202_2650500_-	replication endonuclease	Q858T4	Yersinia_virus	0.0e+00	75.5
WP_014884151.1\|2650501_2650765_-	DUF5405 family protein	U5N3W1	Enterobacteria_phage	2.0e-22	57.0
WP_014884152.1\|2650787_2651006_-	DUF2732 family protein	S4TP68	Salmonella_phage	3.8e-11	62.1
WP_014884153.1\|2651072_2651573_-	hypothetical protein	M1SV55	Escherichia_phage	7.4e-71	75.9
WP_014884154.1\|2651739_2652015_-	regulatory phage cox family protein	Q1JS60	Enterobacteria_phage	6.8e-42	85.6
WP_014884155.1\|2652139_2652439_+	helix-turn-helix transcriptional regulator	Q1JS61	Enterobacteria_phage	2.9e-38	74.7
WP_032609415.1\|2652535_2653546_+\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	1.2e-147	76.1
2654831:2654845	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2890479 : 2944943

Pectobacterium_phage(26.67%)

coat,integrase,terminase,holin

attL 2902402:2902418|attR 2949630:2949646

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022651452.1\|2890479_2891442_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_022651453.1\|2891438_2893823_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_022651454.1\|2893798_2894560_-	molecular chaperone	NA	NA	NA	NA
WP_032609535.1\|2894576_2895125_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_003859701.1\|2895132_2895705_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_032609537.1\|2896131_2897391_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_003859699.1\|2897436_2897940_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_032659185.1\|2897959_2899969_-	chemotaxis protein CheA	NA	NA	NA	NA
WP_032609542.1\|2899973_2900903_-	flagellar motor protein MotB	NA	NA	NA	NA
WP_003859696.1\|2900899_2901787_-	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_003859695.1\|2901910_2902489_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
2902402:2902418	attL	NA	NA	NA	NA
WP_006811111.1\|2902491_2902851_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_003859692.1\|2903638_2904067_+	universal stress protein UspC	NA	NA	NA	NA
WP_003859691.1\|2904082_2905507_-	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
WP_023314361.1\|2905481_2906285_-	trehalose-phosphatase	NA	NA	NA	NA
WP_003859689.1\|2906438_2907419_-	arabinose ABC transporter permease AraH	NA	NA	NA	NA
WP_032609545.1\|2907433_2908948_-	L-arabinose ABC transporter ATP-binding protein AraG	A0A285PWH2	Cedratvirus	9.0e-11	28.7
WP_017384422.1\|2909019_2910009_-	arabinose ABC transporter substrate-binding protein AraF	NA	NA	NA	NA
WP_032610249.1\|2910325_2910883_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_032609548.1\|2911385_2911889_+	non-heme ferritin-like protein	NA	NA	NA	NA
WP_032609551.1\|2912030_2913374_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
WP_003859683.1\|2913454_2913706_-	DUF2766 domain-containing protein	NA	NA	NA	NA
WP_003859682.1\|2913812_2913896_-	stress response protein AzuC	NA	NA	NA	NA
WP_032609552.1\|2914110_2915529_+	MFS transporter	NA	NA	NA	NA
WP_003859680.1\|2915572_2916211_-	RpiB/LacA/LacB family sugar-phosphate isomerase	NA	NA	NA	NA
WP_003859678.1\|2916456_2916795_+	hypothetical protein	NA	NA	NA	NA
WP_044596268.1\|2916995_2917493_+	non-heme ferritin	NA	NA	NA	NA
WP_003859673.1\|2917529_2917766_-	YecH family protein	NA	NA	NA	NA
WP_032609553.1\|2917958_2919170_+	tyrosine transporter TyrP	NA	NA	NA	NA
WP_003859671.1\|2919486_2920155_-	YecA family protein	NA	NA	NA	NA
WP_003859669.1\|2920566_2921688_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003859667.1\|2921756_2922671_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_032609554.1\|2922682_2923957_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA
WP_003859662.1\|2923953_2924829_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_003859661.1\|2924825_2925542_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-12	28.5
WP_032609555.1\|2925705_2926176_+	hypothetical protein	NA	NA	NA	NA
WP_022651459.1\|2926181_2927108_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003859653.1\|2927137_2927461_-	hypothetical protein	NA	NA	NA	NA
WP_154817219.1\|2927550_2927913_+	hypothetical protein	NA	NA	NA	NA
WP_032609556.1\|2928212_2928572_-	hypothetical protein	R9TPM9	Aeromonas_phage	2.4e-15	45.5
WP_032609557.1\|2928568_2929108_-	lysozyme	H6WRZ4	Salmonella_phage	2.2e-92	89.3
WP_023295991.1\|2929088_2929319_-\|holin	class II holin family protein	A5LH82	Enterobacteria_phage	2.9e-22	71.0
WP_023295990.1\|2929468_2929831_+	GtrA family protein	B9UDL8	Salmonella_phage	3.5e-46	75.0
WP_032609558.1\|2929827_2930769_+	glycosyltransferase family 2 protein	U5P087	Shigella_phage	5.5e-160	91.7
WP_032609559.1\|2930765_2932247_+	hypothetical protein	NA	NA	NA	NA
WP_048859468.1\|2932276_2934523_-	hypothetical protein	A0A0F6TJC8	Escherichia_coli_O157_typing_phage	3.8e-66	46.0
WP_032609560.1\|2934543_2936154_-\|terminase	phage terminase large subunit	A0A2H4JCA3	uncultured_Caudovirales_phage	8.4e-225	70.3
WP_032609561.1\|2936150_2936492_-	hypothetical protein	A0A2H4J7H0	uncultured_Caudovirales_phage	3.7e-21	51.8
WP_032609562.1\|2936552_2936963_-	hypothetical protein	NA	NA	NA	NA
WP_032609563.1\|2936962_2937721_-	hypothetical protein	NA	NA	NA	NA
WP_071886171.1\|2938947_2939142_-	hypothetical protein	NA	NA	NA	NA
WP_077870381.1\|2939210_2939624_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	2.0e-37	61.9
WP_071886172.1\|2940175_2940499_+	hypothetical protein	NA	NA	NA	NA
WP_032610253.1\|2940549_2942742_+	hypothetical protein	H9C157	Pectobacterium_phage	6.5e-103	35.9
WP_032609565.1\|2942738_2943299_+	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	2.9e-47	56.3
WP_032609566.1\|2943301_2943484_+	hypothetical protein	NA	NA	NA	NA
WP_032609568.1\|2943694_2943943_+	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	6.4e-07	39.5
WP_032609570.1\|2943926_2944943_+\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	2.8e-125	64.0
2949630:2949646	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3045966 : 3054816

Escherichia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032609643.1\|3045966_3046971_+	NAD-dependent epimerase	A0A2K9L0I7	Tupanvirus	3.3e-33	29.0
WP_032609644.1\|3048445_3049612_-	UDP-glucose 6-dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	1.2e-111	53.5
WP_023294999.1\|3049865_3051272_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	5.2e-37	28.3
WP_023295000.1\|3051407_3051956_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	9.1e-54	54.4
WP_032609645.1\|3051966_3052857_-	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	4.8e-28	31.3
WP_032609646.1\|3052869_3053736_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.8e-110	66.3
WP_032103484.1\|3053751_3054816_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.4e-104	54.4

DBSCAN-SWA_7

3472655 : 3618322

164

Escherichia_phage(27.68%)

lysis,tail,terminase,holin,coat,head,integrase,portal,tRNA,capsid,plate

attL 3491996:3492010|attR 3616079:3616096

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003860666.1\|3472655_3473381_-\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_003860668.1\|3473513_3474317_+	inositol-1-monophosphatase	NA	NA	NA	NA
WP_003860669.1\|3474378_3475359_-	nickel/cobalt transporter	NA	NA	NA	NA
WP_003860670.1\|3475349_3475988_-	DUF1007 family protein	NA	NA	NA	NA
WP_022651600.1\|3476113_3477391_+	stationary phase inducible protein CsiE	NA	NA	NA	NA
WP_003860673.1\|3477391_3478531_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA
WP_003860675.1\|3478703_3479126_+	DoxX family protein	NA	NA	NA	NA
WP_003860678.1\|3479179_3480433_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	3.0e-100	53.4
WP_032665849.1\|3480737_3481928_+	NO-inducible flavohemoprotein	NA	NA	NA	NA
WP_003860685.1\|3482004_3482343_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
WP_003860687.1\|3482423_3483761_-	two-component system response regulator GlrR	W8CYM9	Bacillus_phage	2.0e-09	33.0
WP_003860689.1\|3483757_3484510_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA
WP_032610263.1\|3484506_3485940_-	two component system sensor histidine kinase QseE/GlrK	W8CYF6	Bacillus_phage	6.8e-16	27.9
WP_032609857.1\|3486472_3490360_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	7.7e-131	59.0
WP_022651605.1\|3490627_3492178_+	membrane-bound lytic murein transglycosylase MltF	NA	NA	NA	NA
3491996:3492010	attL	NA	NA	NA	NA
WP_022651606.1\|3492065_3492605_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
3491996:3492010	attL	NA	NA	NA	NA
WP_032609859.1\|3492629_3493265_-	acid phosphatase AphA	NA	NA	NA	NA
WP_032609861.1\|3493268_3494633_-	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_003860700.1\|3494642_3495539_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_003860702.1\|3495657_3496506_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_003860704.1\|3496562_3496823_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.4e-17	51.2
WP_003860706.1\|3496819_3497200_-	holo-ACP synthase	NA	NA	NA	NA
WP_003860707.1\|3497199_3497931_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_003860708.1\|3498006_3498714_-	DNA repair protein RecO	NA	NA	NA	NA
WP_003860709.1\|3498731_3499637_-	GTPase Era	NA	NA	NA	NA
WP_003860711.1\|3499633_3500314_-	ribonuclease III	A0A2P0VNZ5	Tetraselmis_virus	9.6e-21	39.0
WP_003860712.1\|3500537_3501512_-	signal peptidase I	NA	NA	NA	NA
WP_003860714.1\|3501527_3503333_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	1.1e-23	25.9
WP_044596260.1\|3503515_3503839_-	hypothetical protein	K7PGV5	Enterobacterial_phage	4.1e-22	50.5
WP_044596259.1\|3503838_3504078_-	hypothetical protein	K7P7N3	Enterobacteria_phage	2.2e-25	70.5
WP_044596258.1\|3504160_3505459_-	hypothetical protein	G8C7K5	Escherichia_phage	1.6e-170	71.8
WP_017694300.1\|3505518_3505752_-	hypothetical protein	E4WL42	Enterobacteria_phage	3.0e-30	77.9
WP_044596257.1\|3505859_3506531_-	hypothetical protein	A0A2P0WA07	Enterobacter_phage	7.6e-87	72.6
WP_044596256.1\|3506531_3506846_-	hypothetical protein	A0A2P0WA17	Enterobacter_phage	3.6e-31	63.7
WP_044596255.1\|3506889_3510465_-\|tail	phage tail protein	G8C7R4	Escherichia_phage	0.0e+00	87.8
WP_023295178.1\|3510520_3511120_-\|tail	tail assembly protein	G8C7R3	Escherichia_phage	1.1e-100	95.5
WP_044596254.1\|3511107_3511839_-	C40 family peptidase	G8C7R2	Escherichia_phage	4.5e-149	95.9
WP_044596253.1\|3511851_3512622_-\|tail	phage minor tail protein L	G8C7R1	Escherichia_phage	9.2e-145	96.1
WP_044596252.1\|3512621_3512972_-\|tail	phage tail protein	G8C7R0	Escherichia_phage	4.4e-54	90.5
WP_023295182.1\|3513057_3513444_-	hypothetical protein	NA	NA	NA	NA
WP_044596251.1\|3513500_3516554_-\|tail	phage tail tape measure protein	G8C7Q6	Escherichia_phage	0.0e+00	79.7
WP_016247126.1\|3516553_3516841_-	DUF1799 domain-containing protein	I6PD79	Cronobacter_phage	1.2e-17	61.5
WP_044596250.1\|3516858_3517197_-	hypothetical protein	G8C7Q5	Escherichia_phage	1.9e-54	94.6
WP_045325446.1\|3517262_3518075_-	DUF1983 domain-containing protein	S4TNN5	Salmonella_phage	2.4e-50	49.1
WP_044596249.1\|3518218_3519151_-\|tail	major tail protein	G8C7Q3	Escherichia_phage	1.1e-165	98.7
WP_025759418.1\|3519197_3519644_-	DUF4128 domain-containing protein	G8C7Q2	Escherichia_phage	5.1e-71	90.6
WP_039270145.1\|3519633_3520233_-	hypothetical protein	G8C7Q1	Escherichia_phage	1.0e-98	89.9
WP_039270143.1\|3520234_3520588_-	hypothetical protein	G8C7Q0	Escherichia_phage	1.2e-51	89.7
WP_039270141.1\|3520589_3521072_-	hypothetical protein	G8C7P9	Escherichia_phage	5.7e-84	95.6
WP_044596248.1\|3521074_3521320_-	hypothetical protein	G8C7P8	Escherichia_phage	1.3e-15	58.0
WP_032621539.1\|3521359_3522496_-\|coat	coat protein	G8C7P7	Escherichia_phage	8.4e-195	92.6
WP_044596247.1\|3522512_3523265_-	hypothetical protein	G8C7P6	Escherichia_phage	1.3e-127	94.0
WP_022651635.1\|3523372_3523582_-	hypothetical protein	A0A2H4J0Y9	uncultured_Caudovirales_phage	1.0e-13	48.5
WP_044596246.1\|3523585_3524692_-	phage Mu F like family protein	G8C7P5	Escherichia_phage	7.4e-188	90.2
WP_044596245.1\|3524693_3526097_-	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	6.8e-255	95.3
WP_044596244.1\|3526101_3527406_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	1.3e-146	59.6
WP_044596243.1\|3527383_3528382_-\|terminase	terminase small subunit	I6X6R5	Burkholderia_virus	6.7e-39	43.4
WP_044596242.1\|3528855_3529053_-	hypothetical protein	K7PHC3	Enterobacterial_phage	3.4e-27	93.8
WP_044596241.1\|3529142_3529421_-	hypothetical protein	NA	NA	NA	NA
WP_044596240.1\|3529548_3529728_-	hypothetical protein	K7PM01	Enterobacterial_phage	1.0e-14	79.5
WP_044596288.1\|3529684_3529954_-	hypothetical protein	G8C7W1	Escherichia_phage	9.0e-31	83.1
WP_044596239.1\|3529961_3530591_-	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	3.9e-101	86.6
WP_048240575.1\|3530590_3530872_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	4.4e-20	47.3
WP_023295203.1\|3530858_3531245_-\|holin	phage holin family protein	A0A192Y8P2	Salmonella_phage	3.0e-43	78.1
WP_044596238.1\|3532100_3532910_-	antitermination protein	M9NZB0	Enterobacteria_phage	9.1e-111	70.9
WP_044596237.1\|3532906_3533047_-	YlcG family protein	NA	NA	NA	NA
WP_044596236.1\|3533043_3533400_-	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	1.4e-63	95.8
WP_022651648.1\|3533396_3533678_-	DUF1364 family protein	K7P7Q1	Enterobacteria_phage	7.2e-47	100.0
WP_032645668.1\|3533680_3533881_-	hypothetical protein	H6WRY8	Salmonella_phage	3.7e-21	66.7
WP_017693509.1\|3533886_3534486_-	DUF1367 family protein	A0A0M4QX23	Salmonella_phage	2.7e-99	87.8
WP_071886175.1\|3534522_3534771_-	hypothetical protein	K7PHG9	Enterobacteria_phage	4.5e-37	87.8
WP_006811588.1\|3534886_3535120_-	DinI family protein	A0A0M4REN2	Salmonella_phage	5.2e-27	79.2
WP_044596235.1\|3535263_3537243_-	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	3.7e-206	54.0
WP_044596234.1\|3537239_3537986_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	7.5e-67	79.1
WP_044596233.1\|3537988_3538393_-	hypothetical protein	Q5G8V2	Enterobacteria_phage	3.3e-13	76.0
WP_022651653.1\|3538392_3538725_-	hypothetical protein	NA	NA	NA	NA
WP_044596232.1\|3538721_3538982_-	DUF977 family protein	H6WRX9	Salmonella_phage	8.1e-29	73.5
WP_044596231.1\|3538985_3539672_-	DUF1627 domain-containing protein	NA	NA	NA	NA
WP_044596230.1\|3539688_3540441_-	ATP-binding protein	S4TNF5	Salmonella_phage	1.5e-115	83.2
WP_044596229.1\|3540437_3541421_-	replication protein	H6WRX7	Salmonella_phage	1.7e-127	78.0
WP_044596228.1\|3541757_3542300_-	toxin YdaT domain-containing protein	M9NZI6	Enterobacteria_phage	2.0e-45	53.9
WP_044596227.1\|3542302_3542536_-	helix-turn-helix domain-containing protein	A0A0M4QX15	Salmonella_phage	4.7e-20	61.0
WP_044596226.1\|3542639_3543035_+	helix-turn-helix domain-containing protein	K7PM35	Enterobacteria_phage	5.9e-47	71.8
WP_044596287.1\|3543154_3544231_+	AAA family ATPase	E7C9Q8	Salmonella_phage	6.2e-123	60.5
WP_044596286.1\|3544271_3544481_-	fumarate hydratase FumD	I6R0R9	Salmonella_phage	1.8e-26	89.9
WP_032619247.1\|3544766_3544952_+	hypothetical protein	NA	NA	NA	NA
WP_044596225.1\|3545071_3545257_+	DUF1482 family protein	NA	NA	NA	NA
WP_032654607.1\|3545266_3545425_+	hypothetical protein	K7P7H7	Enterobacteria_phage	4.8e-16	76.9
WP_032665953.1\|3545510_3545798_+	hypothetical protein	H6WRX2	Salmonella_phage	4.2e-34	67.4
WP_044596224.1\|3545920_3548989_+	PD-(D/E)XK nuclease-like domain-containing protein	K7PJT5	Enterobacteria_phage	0.0e+00	68.7
WP_032682260.1\|3549000_3550113_+	recombinase RecT	H6WRX0	Salmonella_phage	6.3e-163	78.0
WP_032682190.1\|3550147_3550387_+	DUF4060 family protein	M9P0E0	Enterobacteria_phage	5.5e-24	70.5
WP_022651668.1\|3550433_3550718_+	excisionase Xis	H6WRW8	Salmonella_phage	4.3e-39	83.0
WP_044596223.1\|3550695_3551925_-\|integrase	site-specific integrase	H6WRW7	Salmonella_phage	6.4e-241	98.0
WP_003860716.1\|3552356_3552833_-	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_003860717.1\|3552829_3553783_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_032609863.1\|3553782_3554433_-	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_006176728.1\|3554464_3555040_-	RNA polymerase sigma factor RpoE	A0A0F6TH34	Sinorhizobium_phage	8.2e-05	28.1
WP_003860722.1\|3555466_3557086_+	L-aspartate oxidase	NA	NA	NA	NA
WP_032609866.1\|3557070_3557808_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_003860725.1\|3557940_3559269_+	ATP-dependent RNA helicase SrmB	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	4.7e-48	33.5
3559159:3559173	attR	NA	NA	NA	NA
WP_003860727.1\|3559321_3559705_-	autonomous glycyl radical cofactor GrcA	A0A193GZ98	Escherichia_phage	2.1e-33	71.8
3559159:3559173	attR	NA	NA	NA	NA
WP_003860729.1\|3560020_3560710_+	uracil-DNA glycosylase	A0A076JX67	Equid_alphaherpesvirus	7.9e-55	48.8
WP_023314680.1\|3560749_3561835_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_003860733.1\|3562039_3562459_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-13	37.2
WP_003860734.1\|3562529_3563228_+\|tRNA	tRNA-uridine aminocarboxypropyltransferase	NA	NA	NA	NA
WP_022651672.1\|3563263_3565927_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_032609868.1\|3566036_3567392_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_003860739.1\|3567437_3567761_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_003860741.1\|3567757_3569065_-	MFS transporter	Q6JIH2	Burkholderia_virus	2.7e-43	29.6
WP_006811623.1\|3569216_3569669_-	DUF4385 domain-containing protein	M4QHR1	Cyanophage	3.9e-34	50.0
WP_044596222.1\|3575319_3577893_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	3.1e-128	35.8
WP_003863167.1\|3578022_3578754_-	polyphenol oxidase	NA	NA	NA	NA
WP_003863165.1\|3578750_3579731_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_003863164.1\|3579862_3580600_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_003863162.1\|3580867_3581209_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_100229775.1\|3581314_3581362_+	pheA operon leader peptide PheL	NA	NA	NA	NA
WP_023314685.1\|3581469_3582630_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_032609874.1\|3582626_3583499_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_174721864.1\|3583677_3584091_+	hypothetical protein	S4TTB4	Salmonella_phage	6.0e-26	43.5
WP_023323577.1\|3584136_3584358_-	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	4.9e-27	72.6
WP_032609875.1\|3584434_3585604_-	phage late control D family protein	Q6K1G4	Salmonella_virus	7.9e-172	78.8
WP_032609877.1\|3585600_3586065_-\|tail	phage tail protein	A0A218M4I2	Erwinia_phage	7.2e-60	72.1
WP_032609878.1\|3586075_3588526_-\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	9.3e-300	74.9
WP_017382998.1\|3588515_3588638_-\|tail	GpE family phage tail protein	O80316	Escherichia_phage	5.9e-14	89.7
WP_032609880.1\|3588670_3588994_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	4.4e-24	64.0
WP_023295232.1\|3589051_3589570_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	2.9e-78	81.4
WP_032609883.1\|3589582_3590776_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	4.1e-184	81.1
WP_032609885.1\|3591150_3591582_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	5.3e-17	55.1
WP_032609887.1\|3591583_3593932_-\|tail	phage tail protein	A0A0F7LDR4	Escherichia_phage	8.8e-114	47.0
WP_032609889.1\|3593943_3594474_-\|tail	phage tail protein I	Q37841	Escherichia_phage	1.4e-91	86.9
WP_023323586.1\|3594466_3595375_-\|plate	baseplate assembly protein	S4TNY7	Salmonella_phage	8.3e-137	83.8
WP_023323587.1\|3595380_3595731_-	GPW/gp25 family protein	A0A0M4RE59	Salmonella_phage	8.1e-40	72.4
WP_032609890.1\|3595727_3596369_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	5.6e-95	81.7
WP_032609891.1\|3596575_3597088_+	hypothetical protein	NA	NA	NA	NA
WP_032609892.1\|3597166_3598540_-	reverse transcriptase	NA	NA	NA	NA
WP_032609893.1\|3598514_3599072_-	SLATT domain-containing protein	NA	NA	NA	NA
WP_032609894.1\|3599323_3599776_-	phage virion morphogenesis protein	O80313	Escherichia_phage	5.7e-46	64.6
WP_023295244.1\|3599768_3600236_-\|tail	phage tail protein	A0A218M4K6	Erwinia_phage	8.0e-59	69.0
WP_072163360.1\|3600198_3600444_-\|holin	holin	S4TNY4	Salmonella_phage	1.1e-27	75.3
WP_032609895.1\|3600331_3600748_-\|lysis	LysB family phage lysis regulatory protein	A0A218M4K2	Erwinia_phage	3.5e-42	67.2
WP_032609896.1\|3600747_3601179_-	hypothetical protein	A0A218M4L6	Erwinia_phage	1.8e-57	77.6
WP_032609897.1\|3601175_3601688_-	lysozyme	A0A218M4K3	Erwinia_phage	2.3e-83	88.8
WP_014170137.1\|3601671_3601893_-	hypothetical protein	A0A218M4L5	Erwinia_phage	2.1e-25	72.6
WP_017382979.1\|3601883_3602087_-\|tail	tail protein X	Q858W3	Yersinia_virus	3.3e-25	79.1
WP_032609900.1\|3602086_3602593_-\|head	head completion/stabilization protein	O80306	Escherichia_phage	9.9e-63	71.4
WP_032609901.1\|3602692_3603448_-\|terminase	terminase endonuclease subunit	A0A0M4QWM0	Salmonella_phage	2.2e-74	69.3
WP_023295252.1\|3603451_3604519_-\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	9.7e-169	83.6
WP_032609903.1\|3604574_3605429_-\|capsid	GPO family capsid scaffolding protein	S4TP53	Salmonella_phage	7.6e-116	74.6
WP_032609904.1\|3605594_3607364_+\|terminase	terminase ATPase subunit family protein	A0A218M4M1	Erwinia_phage	6.1e-301	85.1
WP_032609906.1\|3607365_3608391_+\|portal	phage portal protein	Q6K1J0	Salmonella_virus	2.7e-168	83.0
WP_032610267.1\|3608783_3609122_-	hypothetical protein	NA	NA	NA	NA
WP_048859478.1\|3609222_3609759_-	hypothetical protein	NA	NA	NA	NA
WP_032609909.1\|3610165_3610630_-	DUF3850 domain-containing protein	Q2P9X4	Enterobacteria_phage	4.4e-41	54.9
WP_044596221.1\|3610635_3612921_-	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	0.0e+00	75.3
WP_023323606.1\|3612910_3613186_-	DUF5405 family protein	M1TAP2	Escherichia_phage	2.2e-24	59.3
WP_044596220.1\|3613202_3613418_-	DUF2732 family protein	NA	NA	NA	NA
WP_023323608.1\|3613482_3613983_-	hypothetical protein	M1SV55	Escherichia_phage	8.5e-83	89.2
WP_180255712.1\|3613973_3614180_-	hypothetical protein	S4TNZ7	Salmonella_phage	2.0e-14	65.2
WP_023295263.1\|3614155_3614428_-	hypothetical protein	Q1JS20	Enterobacteria_phage	3.4e-38	82.2
WP_023295264.1\|3614587_3614881_+	helix-turn-helix transcriptional regulator	Q1JS21	Enterobacteria_phage	7.7e-36	71.1
WP_044596219.1\|3614950_3615931_+\|integrase	tyrosine-type recombinase/integrase	S4TP66	Salmonella_phage	4.0e-153	81.0
WP_022649060.1\|3616119_3617241_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_006811632.1\|3617251_3618322_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	4.5e-89	51.5

DBSCAN-SWA_8

3623649 : 3667132

Enterobacteria_phage(29.41%)

tail,terminase,holin,integrase,tRNA

attL 3615720:3615736|attR 3670527:3670543

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3615720:3615736	attL	NA	NA	NA	NA
WP_003863138.1\|3623649_3624417_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_032609925.1\|3624448_3624988_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_003863133.1\|3625003_3625252_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_003863132.1\|3625368_3626730_-	signal recognition particle protein	NA	NA	NA	NA
WP_003863130.1\|3626896_3627688_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_032609927.1\|3627707_3628994_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_003863126.1\|3629046_3629640_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_003863124.1\|3629762_3630641_+	NAD(+) kinase	NA	NA	NA	NA
WP_023314691.1\|3630726_3632388_+	DNA repair protein RecN	NA	NA	NA	NA
WP_032609930.1\|3632526_3632865_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_003863119.1\|3632926_3633214_-	RnfH family protein	NA	NA	NA	NA
WP_006811645.1\|3633203_3633680_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_003863115.1\|3633797_3634280_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	6.8e-29	46.8
WP_013096351.1\|3635003_3635243_+	DinI family protein	K7PKM2	Enterobacterial_phage	2.2e-33	89.9
WP_123906383.1\|3635329_3635755_-	hypothetical protein	K7P834	Enterobacteria_phage	2.4e-25	47.2
WP_071886176.1\|3636515_3636869_+	hypothetical protein	NA	NA	NA	NA
WP_077870385.1\|3637122_3638250_-\|tail	tail fiber domain-containing protein	A0A2I6PID3	Escherichia_phage	2.1e-52	37.3
WP_032610594.1\|3638307_3638541_-	hypothetical protein	E4WL42	Enterobacteria_phage	2.5e-29	75.3
WP_032610595.1\|3638648_3639320_-	hypothetical protein	A0A2P0WA07	Enterobacter_phage	1.1e-85	70.9
WP_032610596.1\|3639320_3639635_-	hypothetical protein	A0A2P0WA17	Enterobacter_phage	6.4e-36	71.6
WP_032610597.1\|3639678_3643476_-\|tail	phage tail protein	K7PHL5	Enterobacterial_phage	0.0e+00	83.5
WP_032610598.1\|3643530_3644121_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	3.8e-90	85.2
WP_032610599.1\|3644147_3644495_-	hypothetical protein	NA	NA	NA	NA
WP_032610600.1\|3644523_3645234_-	C40 family peptidase	K7PJV6	Enterobacteria_phage	1.5e-141	96.2
WP_032610602.1\|3645235_3645991_-\|tail	phage minor tail protein L	K7PKU0	Enterobacteria_phage	1.0e-135	92.4
WP_032610603.1\|3645987_3646326_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	9.2e-49	77.7
WP_052686367.1\|3646328_3647285_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	1.5e-88	55.2
WP_032610605.1\|3648119_3648593_-\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	7.2e-84	95.5
WP_032610606.1\|3648750_3649101_-	HNH endonuclease	K7PHK9	Enterobacteria_phage	2.7e-51	81.0
WP_071886177.1\|3649100_3649691_-	hypothetical protein	K7PGW6	Enterobacterial_phage	1.2e-88	76.0
WP_032610607.1\|3649672_3651130_-	glycosyl transferase	K7PKP3	Enterobacterial_phage	4.0e-274	92.6
WP_032610608.1\|3651218_3651917_+	hypothetical protein	NA	NA	NA	NA
WP_071886186.1\|3652166_3652436_-	hypothetical protein	G8C7W1	Escherichia_phage	2.0e-30	82.0
WP_032610613.1\|3652443_3653073_-	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	2.7e-102	87.6
WP_017384386.1\|3653072_3653351_-\|holin	phage holin family protein	G8C7V9	Escherichia_phage	1.7e-37	85.9
WP_017384387.1\|3653340_3653730_-\|holin	phage holin family protein	G8C7V8	Escherichia_phage	1.1e-58	92.2
WP_032610617.1\|3654726_3655509_-	antitermination protein	F1C595	Cronobacter_phage	3.1e-108	76.4
WP_032610619.1\|3655536_3656916_-	AAA family ATPase	Q8W640	Enterobacteria_phage	6.4e-173	67.9
WP_032610621.1\|3656912_3657794_-	ATP-binding protein	Q8W641	Enterobacteria_phage	1.8e-80	62.4
WP_087920840.1\|3657809_3658619_-	helix-turn-helix domain-containing protein	A5LH71	Enterobacteria_phage	1.6e-83	64.1
WP_048859479.1\|3658697_3658913_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	2.4e-10	50.0
WP_023296237.1\|3659066_3659759_+	helix-turn-helix transcriptional regulator	A0A2H4FNG6	Salmonella_phage	4.3e-85	65.4
WP_032610623.1\|3659930_3660224_+	hypothetical protein	NA	NA	NA	NA
WP_032610624.1\|3660305_3660695_+	S24 family peptidase	F1C5A0	Cronobacter_phage	4.0e-32	58.8
WP_032610625.1\|3660801_3661023_+	hypothetical protein	NA	NA	NA	NA
WP_023296234.1\|3661015_3661423_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	2.1e-47	87.5
WP_032610626.1\|3661612_3662026_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	2.0e-45	64.2
WP_032610627.1\|3662129_3662414_+	hypothetical protein	NA	NA	NA	NA
WP_000050710.1\|3662403_3662613_+	hypothetical protein	I6PBM8	Cronobacter_phage	4.4e-33	97.1
WP_032610629.1\|3662567_3663740_+	DUF3596 domain-containing protein	I6PDJ1	Cronobacter_phage	5.0e-211	93.3
WP_032609931.1\|3664063_3665293_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	1.1e-205	85.6
WP_032609933.1\|3665575_3667132_+	recombinase family protein	A0A0A7RTP8	Clostridium_phage	1.4e-19	31.0
3670527:3670543	attR	NA	NA	NA	NA

DBSCAN-SWA_9

4193285 : 4233577

Salmonella_phage(80.49%)

lysis,tail,terminase,head,integrase,portal,tRNA,capsid,plate

attL 4187564:4187594|attR 4238566:4238596

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4187564:4187594	attL	NA	NA	NA	NA
WP_032607934.1\|4193285_4194299_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	6.3e-109	58.9
WP_001144069.1\|4194535_4194751_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_003862574.1\|4194866_4196612_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.4e-76	39.0
WP_006812010.1\|4196764_4198609_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
WP_032607936.1\|4198709_4199216_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_015386379.1\|4199552_4199771_-	DNA-binding transcriptional regulator	Q53ZE7	Salmonella_virus	1.6e-25	72.2
WP_032610578.1\|4199840_4200941_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	5.5e-183	92.6
WP_032610580.1\|4200937_4201423_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	3.0e-69	90.1
WP_032610582.1\|4201422_4204866_-\|tail	phage tail tape measure protein	A0A1S6L010	Salmonella_phage	0.0e+00	72.4
WP_007848878.1\|4204858_4204978_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	3.3e-14	92.3
WP_007848877.1\|4204992_4205295_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	3.7e-41	91.0
WP_007848874.1\|4205349_4205865_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	7.6e-87	93.0
WP_032610584.1\|4205874_4207047_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.6e-209	93.1
WP_032610585.1\|4207179_4207578_-\|tail	tail fiber assembly protein	K7PMC4	Enterobacterial_phage	2.4e-19	50.0
WP_032610586.1\|4207577_4209314_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	3.3e-142	70.5
WP_032610588.1\|4209310_4209916_-\|tail	phage tail protein I	E5G6N9	Salmonella_phage	5.2e-111	93.5
WP_032610589.1\|4209908_4210817_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	8.0e-148	92.4
WP_039264785.1\|4210803_4211163_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	1.5e-52	89.0
WP_014884896.1\|4211159_4211738_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	8.2e-106	96.9
WP_014884897.1\|4211806_4212253_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.4e-60	81.1
WP_014884898.1\|4212245_4212677_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	3.5e-69	89.5
WP_032610557.1\|4212772_4213201_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	1.4e-57	85.7
WP_032610558.1\|4213197_4213713_-	lysozyme	E5G6N1	Salmonella_phage	3.1e-72	76.5
WP_014884902.1\|4213693_4213909_-	hypothetical protein	E5G6N0	Salmonella_phage	2.0e-20	66.2
WP_000868184.1\|4213912_4214116_-\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_014884903.1\|4214115_4214583_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.3e-48	58.7
WP_006777754.1\|4214681_4215335_-\|terminase	Small terminase subunit	E5G6M7	Salmonella_phage	5.2e-56	56.1
WP_014884904.1\|4215338_4216487_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.2e-132	68.8
WP_032610559.1\|4216502_4217330_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	1.3e-72	64.3
WP_032610561.1\|4217479_4219243_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	6.5e-312	87.5
WP_032610563.1\|4219242_4220292_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	2.4e-156	79.5
WP_057979947.1\|4220379_4220586_-	hypothetical protein	NA	NA	NA	NA
WP_001217561.1\|4220763_4220997_-	DinI family protein	A0A1S6L014	Salmonella_phage	2.2e-33	92.2
WP_032610566.1\|4221009_4221198_-	hypothetical protein	A0A1S6L006	Salmonella_phage	5.7e-24	91.9
WP_032610567.1\|4221359_4223753_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	91.4
WP_032610569.1\|4223749_4224601_-	DNA adenine methylase	E5G6L8	Salmonella_phage	2.8e-118	72.3
WP_032610570.1\|4224597_4224825_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.5e-34	92.0
WP_032610571.1\|4224824_4225058_-	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	2.1e-23	79.2
WP_032610572.1\|4225125_4225467_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.5e-51	85.8
WP_015386352.1\|4225430_4225631_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	8.7e-31	90.9
WP_015386351.1\|4225638_4226148_-	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.0e-83	93.5
WP_015386350.1\|4226182_4226419_-	hypothetical protein	NA	NA	NA	NA
WP_032610574.1\|4226520_4227135_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.2e-38	41.4
WP_032610575.1\|4227146_4228046_+	NAD-dependent DNA ligase	NA	NA	NA	NA
WP_032610576.1\|4228055_4229069_+\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	4.8e-117	60.2
WP_003862593.1\|4229446_4230616_+	DNA repair ATPase	NA	NA	NA	NA
WP_032607938.1\|4230616_4231381_-	siderophore-interacting protein	NA	NA	NA	NA
WP_003862595.1\|4231526_4232021_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_032607942.1\|4232017_4233577_-	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	7.4e-08	31.5
4238566:4238596	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010363

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP012165

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection