CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019962	Eubacterium limosum strain ATCC 8486 chromosome, complete genome	3 crisprs	csa3,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,WYL,DinG,csx1,DEDDh,c2c10_CAS-V-U3,Cas14b_CAS-V-F	1	8	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019962_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019962_1

857746-859791

TypeI

III-B

Consensus_repeat	Method
GTTGAAGATTAACATGAGATGTATTTAAAT	PILER-CR
GTTGAAGATTAACATGAGATGTATTTAAAT	CRISPRCasFinder
GTTGAAGATTAACATGAGATGTATTTAAAT	CRT

31 spacers

cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

The CRISPR arrays of NZ_CP019962_1

>merge|NZ_CP019962|1|857746-859791|PILER-CR,CRISPRCasFinder,CRT
GTTGAAGATTAACATGAGATGTATTTAAATTTTATCATTGGAGAGATTTACGCCCGCCTGTTCAAGGTTGAAGATTAACATGAGATGTATTTAAATACCGGATAACTGTCCATGGCTCCGGCTTCATCGGCGTTGAAGATTAACATGAGATGTATTTAAATTCCTTAATCTTGCACGCGCGTACTTTTTCAATGTCCGTTGAAGATTAACATGAGATGTATTTAAATTCCCTTCTGGCCTTGGTGCACAGAACCGCAACAACAGTTGAAGATTAACATGAGATGTATTTAAATTCGGTGGATAAAATCAAAATGGTTACACGGGCTATCGTTGAAGATTAACATGAGATGTATTTAAATCGCTCTAAAATCCAGTTTTCTTGTTCTCTTATTTTTGTTGAAGATTAACATGAGATGTATTTAAATTTATTCCGAAAACCGCCCAGCTCATGGTGCATAAGCCGTTGAAGATTAACATGAGATGTATTTAAATCATTTTCGAGCGCAGTATTTGTCAAATCCAATTCCCGTTGAAGATTAACATGAGATGTATTTAAATTTTTCGATCCCGAAACGCGGGGCTTTTCCATTATTTGTTGAAGATTAACATGAGATGTATTTAAATGAATATGGCGAAACCGATTCAAAAACCCTTGCGTGTTGAAGATTAACATGAGATGTATTTAAATAAGATATGGCAGATATCCCAAGGGCGATTAGAGCAAGTTGAAGATTAACATGAGATGTATTTAAATCCGAAAAGATCGCCCCCTACAGCTATCAGATCCGTGTTGAAGATTAACATGAGATGTATTTAAATCGCTTAAAATGCTGGATGTTATAAATCCGTCTGCGTTGAAGATTAACATGAGATGTATTTAAATTGAATATTAAATACATTCCTGTGATTATCTGTGGGAGTTGAAGATTAACATGAGATGTATTTAAATGGCTTCAAGGGTTTCCAGATTATTTATTTGAAAAGGTTGAAGATTAACATGAGATGTATTTAAATAGAATTCCGTTGACCACGTCAATAAGTGCGTTTGGTTGAAGATTAACATGAGATGTATTTAAATTAACGCCCTTCGATCCGGTCAATATGGCCTTCTTGTTGAAGATTAACATGAGATGTATTTAAATCGAATTGATAGGGCCAGTACTCGCCGCCGTTTACTAGTTGAAGATTAACATGAGATGTATTTAAATGAAAGAGCACGGTACTGTGTCTGTACGCTCTGCGGGTTGAAGATTAACATGAGATGTATTTAAATATATAAAGCATTCGTTTTTCAAAGTCCACACGATCCGTTGAAGATTAACATGAGATGTATTTAAATTGGCGAGTAAAGATAAGTACACCAAAGATTTCTTCCGTTGAAGATTAACATGAGATGTATTTAAATATGTAAGCGCGGTTGAAGCCGTTGCGTCTCCAGATTGTTGAAGATTAACATGAGATGTATTTAAATGGCCATCTTTCATTCTGGCCATAAAAGAAAAAGCAAGTTGAAGATTAACATGAGATGTATTTAAATACAGTTCTTGTCAGCCATTGGCGAGGATTTAGGGCGTTGAAGATTAACATGAGATGTATTTAAATTCAATTTTGAATAAGCGTTCAATGACCCTGCTTAAGTTGAAGATTAACATGAGATGTATTTAAATGCGGCTTTCTGAGCTGCGACTGCTGCGGCCCTGGCGTTGAAGATTAACATGAGATGTATTTAAATAGTTTAAATCCCTCCCTTACGCAGATGGCCTGCATGTTGAAGATTAACATGAGATGTATTTAAATAAACCGTCAATGCGCCTTTTCTGTATACCGACTATAGTTGAAGATTAACATGAGATGTATTTAAATACAGTTCTTGTCAGCCATTGGCGAGGATTTAGGGCGTTGAAGATTAACATGAGATGTATTTAAATCCAGCGGATACAATATCTCCGTCGTAACCTTCGTTTGTTGAAGATTAACATGAGATGTATTGACTGCGGTGTAAGGCACTATAGGAAAGTTGAAGAATAATAAAAGCTATATTTATCA

>NZ_CP019962|1|1|857746-859673|PILER-CR
GTTGAAGATTAACATGAGATGTATTTAAAT	TTTATCATTGGAGAGATTTACGCCCGCCTGTTCAAG
GTTGAAGATTAACATGAGATGTATTTAAAT	ACCGGATAACTGTCCATGGCTCCGGCTTCATCGGC
GTTGAAGATTAACATGAGATGTATTTAAAT	TCCTTAATCTTGCACGCGCGTACTTTTTCAATGTCC
GTTGAAGATTAACATGAGATGTATTTAAAT	TCCCTTCTGGCCTTGGTGCACAGAACCGCAACAACA
GTTGAAGATTAACATGAGATGTATTTAAAT	TCGGTGGATAAAATCAAAATGGTTACACGGGCTATC
GTTGAAGATTAACATGAGATGTATTTAAAT	CGCTCTAAAATCCAGTTTTCTTGTTCTCTTATTTTT
GTTGAAGATTAACATGAGATGTATTTAAAT	TTATTCCGAAAACCGCCCAGCTCATGGTGCATAAGCC
GTTGAAGATTAACATGAGATGTATTTAAAT	CATTTTCGAGCGCAGTATTTGTCAAATCCAATTCCC
GTTGAAGATTAACATGAGATGTATTTAAAT	TTTTCGATCCCGAAACGCGGGGCTTTTCCATTATTT
GTTGAAGATTAACATGAGATGTATTTAAAT	GAATATGGCGAAACCGATTCAAAAACCCTTGCGT
GTTGAAGATTAACATGAGATGTATTTAAAT	AAGATATGGCAGATATCCCAAGGGCGATTAGAGCAA
GTTGAAGATTAACATGAGATGTATTTAAAT	CCGAAAAGATCGCCCCCTACAGCTATCAGATCCGT
GTTGAAGATTAACATGAGATGTATTTAAAT	CGCTTAAAATGCTGGATGTTATAAATCCGTCTGC
GTTGAAGATTAACATGAGATGTATTTAAAT	TGAATATTAAATACATTCCTGTGATTATCTGTGGGA
GTTGAAGATTAACATGAGATGTATTTAAAT	GGCTTCAAGGGTTTCCAGATTATTTATTTGAAAAG
GTTGAAGATTAACATGAGATGTATTTAAAT	AGAATTCCGTTGACCACGTCAATAAGTGCGTTTG
GTTGAAGATTAACATGAGATGTATTTAAAT	TAACGCCCTTCGATCCGGTCAATATGGCCTTCTT
GTTGAAGATTAACATGAGATGTATTTAAAT	CGAATTGATAGGGCCAGTACTCGCCGCCGTTTACTA
GTTGAAGATTAACATGAGATGTATTTAAAT	GAAAGAGCACGGTACTGTGTCTGTACGCTCTGCGG
GTTGAAGATTAACATGAGATGTATTTAAAT	ATATAAAGCATTCGTTTTTCAAAGTCCACACGATCC
GTTGAAGATTAACATGAGATGTATTTAAAT	TGGCGAGTAAAGATAAGTACACCAAAGATTTCTTCC
GTTGAAGATTAACATGAGATGTATTTAAAT	ATGTAAGCGCGGTTGAAGCCGTTGCGTCTCCAGATT
GTTGAAGATTAACATGAGATGTATTTAAAT	GGCCATCTTTCATTCTGGCCATAAAAGAAAAAGCAA
GTTGAAGATTAACATGAGATGTATTTAAAT	ACAGTTCTTGTCAGCCATTGGCGAGGATTTAGGGC
GTTGAAGATTAACATGAGATGTATTTAAAT	TCAATTTTGAATAAGCGTTCAATGACCCTGCTTAA
GTTGAAGATTAACATGAGATGTATTTAAAT	GCGGCTTTCTGAGCTGCGACTGCTGCGGCCCTGGC
GTTGAAGATTAACATGAGATGTATTTAAAT	AGTTTAAATCCCTCCCTTACGCAGATGGCCTGCAT
GTTGAAGATTAACATGAGATGTATTTAAAT	AAACCGTCAATGCGCCTTTTCTGTATACCGACTATA
GTTGAAGATTAACATGAGATGTATTTAAAT	ACAGTTCTTGTCAGCCATTGGCGAGGATTTAGGGC
GTTGAAGATTAACATGAGATGTATTTAAAT

>NZ_CP019962|1|1|857746-859791|CRISPRCasFinder
GTTGAAGATTAACATGAGATGTATTTAAAT	TTTATCATTGGAGAGATTTACGCCCGCCTGTTCAAG
GTTGAAGATTAACATGAGATGTATTTAAAT	ACCGGATAACTGTCCATGGCTCCGGCTTCATCGGC
GTTGAAGATTAACATGAGATGTATTTAAAT	TCCTTAATCTTGCACGCGCGTACTTTTTCAATGTCC
GTTGAAGATTAACATGAGATGTATTTAAAT	TCCCTTCTGGCCTTGGTGCACAGAACCGCAACAACA
GTTGAAGATTAACATGAGATGTATTTAAAT	TCGGTGGATAAAATCAAAATGGTTACACGGGCTATC
GTTGAAGATTAACATGAGATGTATTTAAAT	CGCTCTAAAATCCAGTTTTCTTGTTCTCTTATTTTT
GTTGAAGATTAACATGAGATGTATTTAAAT	TTATTCCGAAAACCGCCCAGCTCATGGTGCATAAGCC
GTTGAAGATTAACATGAGATGTATTTAAAT	CATTTTCGAGCGCAGTATTTGTCAAATCCAATTCCC
GTTGAAGATTAACATGAGATGTATTTAAAT	TTTTCGATCCCGAAACGCGGGGCTTTTCCATTATTT
GTTGAAGATTAACATGAGATGTATTTAAAT	GAATATGGCGAAACCGATTCAAAAACCCTTGCGT
GTTGAAGATTAACATGAGATGTATTTAAAT	AAGATATGGCAGATATCCCAAGGGCGATTAGAGCAA
GTTGAAGATTAACATGAGATGTATTTAAAT	CCGAAAAGATCGCCCCCTACAGCTATCAGATCCGT
GTTGAAGATTAACATGAGATGTATTTAAAT	CGCTTAAAATGCTGGATGTTATAAATCCGTCTGC
GTTGAAGATTAACATGAGATGTATTTAAAT	TGAATATTAAATACATTCCTGTGATTATCTGTGGGA
GTTGAAGATTAACATGAGATGTATTTAAAT	GGCTTCAAGGGTTTCCAGATTATTTATTTGAAAAG
GTTGAAGATTAACATGAGATGTATTTAAAT	AGAATTCCGTTGACCACGTCAATAAGTGCGTTTG
GTTGAAGATTAACATGAGATGTATTTAAAT	TAACGCCCTTCGATCCGGTCAATATGGCCTTCTT
GTTGAAGATTAACATGAGATGTATTTAAAT	CGAATTGATAGGGCCAGTACTCGCCGCCGTTTACTA
GTTGAAGATTAACATGAGATGTATTTAAAT	GAAAGAGCACGGTACTGTGTCTGTACGCTCTGCGG
GTTGAAGATTAACATGAGATGTATTTAAAT	ATATAAAGCATTCGTTTTTCAAAGTCCACACGATCC
GTTGAAGATTAACATGAGATGTATTTAAAT	TGGCGAGTAAAGATAAGTACACCAAAGATTTCTTCC
GTTGAAGATTAACATGAGATGTATTTAAAT	ATGTAAGCGCGGTTGAAGCCGTTGCGTCTCCAGATT
GTTGAAGATTAACATGAGATGTATTTAAAT	GGCCATCTTTCATTCTGGCCATAAAAGAAAAAGCAA
GTTGAAGATTAACATGAGATGTATTTAAAT	ACAGTTCTTGTCAGCCATTGGCGAGGATTTAGGGC
GTTGAAGATTAACATGAGATGTATTTAAAT	TCAATTTTGAATAAGCGTTCAATGACCCTGCTTAA
GTTGAAGATTAACATGAGATGTATTTAAAT	GCGGCTTTCTGAGCTGCGACTGCTGCGGCCCTGGC
GTTGAAGATTAACATGAGATGTATTTAAAT	AGTTTAAATCCCTCCCTTACGCAGATGGCCTGCAT
GTTGAAGATTAACATGAGATGTATTTAAAT	AAACCGTCAATGCGCCTTTTCTGTATACCGACTATA
GTTGAAGATTAACATGAGATGTATTTAAAT	ACAGTTCTTGTCAGCCATTGGCGAGGATTTAGGGC
GTTGAAGATTAACATGAGATGTATTTAAAT	CCAGCGGATACAATATCTCCGTCGTAACCTTCGTTT
GTTGAAGATTAACATGAGATGTATTGACTG	CGGTGTAAGGCACTATAGGAAA
GTTGAAGAATAATAAAAGCTATATTTATCA

>NZ_CP019962|1|1|857746-859739|CRT
GTTGAAGATTAACATGAGATGTATTTAAAT	TTTATCATTGGAGAGATTTACGCCCGCCTGTTCAAG
GTTGAAGATTAACATGAGATGTATTTAAAT	ACCGGATAACTGTCCATGGCTCCGGCTTCATCGGC
GTTGAAGATTAACATGAGATGTATTTAAAT	TCCTTAATCTTGCACGCGCGTACTTTTTCAATGTCC
GTTGAAGATTAACATGAGATGTATTTAAAT	TCCCTTCTGGCCTTGGTGCACAGAACCGCAACAACA
GTTGAAGATTAACATGAGATGTATTTAAAT	TCGGTGGATAAAATCAAAATGGTTACACGGGCTATC
GTTGAAGATTAACATGAGATGTATTTAAAT	CGCTCTAAAATCCAGTTTTCTTGTTCTCTTATTTTT
GTTGAAGATTAACATGAGATGTATTTAAAT	TTATTCCGAAAACCGCCCAGCTCATGGTGCATAAGCC
GTTGAAGATTAACATGAGATGTATTTAAAT	CATTTTCGAGCGCAGTATTTGTCAAATCCAATTCCC
GTTGAAGATTAACATGAGATGTATTTAAAT	TTTTCGATCCCGAAACGCGGGGCTTTTCCATTATTT
GTTGAAGATTAACATGAGATGTATTTAAAT	GAATATGGCGAAACCGATTCAAAAACCCTTGCGT
GTTGAAGATTAACATGAGATGTATTTAAAT	AAGATATGGCAGATATCCCAAGGGCGATTAGAGCAA
GTTGAAGATTAACATGAGATGTATTTAAAT	CCGAAAAGATCGCCCCCTACAGCTATCAGATCCGT
GTTGAAGATTAACATGAGATGTATTTAAAT	CGCTTAAAATGCTGGATGTTATAAATCCGTCTGC
GTTGAAGATTAACATGAGATGTATTTAAAT	TGAATATTAAATACATTCCTGTGATTATCTGTGGGA
GTTGAAGATTAACATGAGATGTATTTAAAT	GGCTTCAAGGGTTTCCAGATTATTTATTTGAAAAG
GTTGAAGATTAACATGAGATGTATTTAAAT	AGAATTCCGTTGACCACGTCAATAAGTGCGTTTG
GTTGAAGATTAACATGAGATGTATTTAAAT	TAACGCCCTTCGATCCGGTCAATATGGCCTTCTT
GTTGAAGATTAACATGAGATGTATTTAAAT	CGAATTGATAGGGCCAGTACTCGCCGCCGTTTACTA
GTTGAAGATTAACATGAGATGTATTTAAAT	GAAAGAGCACGGTACTGTGTCTGTACGCTCTGCGG
GTTGAAGATTAACATGAGATGTATTTAAAT	ATATAAAGCATTCGTTTTTCAAAGTCCACACGATCC
GTTGAAGATTAACATGAGATGTATTTAAAT	TGGCGAGTAAAGATAAGTACACCAAAGATTTCTTCC
GTTGAAGATTAACATGAGATGTATTTAAAT	ATGTAAGCGCGGTTGAAGCCGTTGCGTCTCCAGATT
GTTGAAGATTAACATGAGATGTATTTAAAT	GGCCATCTTTCATTCTGGCCATAAAAGAAAAAGCAA
GTTGAAGATTAACATGAGATGTATTTAAAT	ACAGTTCTTGTCAGCCATTGGCGAGGATTTAGGGC
GTTGAAGATTAACATGAGATGTATTTAAAT	TCAATTTTGAATAAGCGTTCAATGACCCTGCTTAA
GTTGAAGATTAACATGAGATGTATTTAAAT	GCGGCTTTCTGAGCTGCGACTGCTGCGGCCCTGGC
GTTGAAGATTAACATGAGATGTATTTAAAT	AGTTTAAATCCCTCCCTTACGCAGATGGCCTGCAT
GTTGAAGATTAACATGAGATGTATTTAAAT	AAACCGTCAATGCGCCTTTTCTGTATACCGACTATA
GTTGAAGATTAACATGAGATGTATTTAAAT	ACAGTTCTTGTCAGCCATTGGCGAGGATTTAGGGC
GTTGAAGATTAACATGAGATGTATTTAAAT	CCAGCGGATACAATATCTCCGTCGTAACCTTCGTTT
GTTGAAGATTAACATGAGATGTATTGACTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019962.1\|WP_038353428.1\|852450_853191_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NZ_CP019962.1\|WP_038353430.1\|855773_856268_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP019962.1\|WP_038353424.1\|847919_848690_+\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|238635
NZ_CP019962.1\|WP_038353427.1\|851513_852449_+\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP019962.1\|WP_038353436.1\|866193_867069_+\|polysaccharide-deacetylase	unknown	unknown	gnl\|CDD\|200569
NZ_CP019962.1\|WP_038353423.1\|846619_847522_+\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|223364
NZ_CP019962.1\|WP_038353438.1\|868078_869191_+\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NZ_CP019962.1\|WP_038353435.1\|863703_864723_-\|DnaD-domain-protein	unknown	unknown	gnl\|CDD\|377797
NZ_CP019962.1\|WP_038353425.1\|849074_849767_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP019962.1\|WP_038353434.1\|862739_863711_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|235871
NZ_CP019962.1\|WP_038353432.1\|857274_857565_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP019962.1\|WP_038353433.1\|861930_862722_+\|tRNA1(Val)-(adenine(37)-N6)-methyltransferase	unknown	unknown	gnl\|CDD\|226608
NZ_CP019962.1\|WP_038353512.1\|869595_869958_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|366361
NZ_CP019962.1\|WP_038353431.1\|856279_857278_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NZ_CP019962.1\|WP_038353429.1\|853177_855763_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|187770
NZ_CP019962.1\|WP_038353437.1\|867251_868040_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293819
NZ_CP019962.1\|WP_052237395.1\|859838_861485_-\|oligosaccharide-repeat-unit-polymerase	unknown	unknown	gnl\|CDD\|367841
NZ_CP019962.1\|WP_013378507.1\|864913_866191_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NZ_CP019962.1\|WP_038353426.1\|849781_851521_+\|hypothetical-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	gnl\|CDD\|188234
NZ_CP019962.1\|WP_038353439.1\|870033_870291_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|378913

Protein	Function_ID	Function_description	E-value
NZ_CP019962.1\|WP_038353428.1\|852450_853191_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	2.83031e-52
NZ_CP019962.1\|WP_038353430.1\|855773_856268_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.15695e-51
NZ_CP019962.1\|WP_038353424.1\|847919_848690_+\|TatD-family-hydrolase	gnl\|CDD\|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	1.5354e-115
NZ_CP019962.1\|WP_038353427.1\|851513_852449_+\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.11441e-50
NZ_CP019962.1\|WP_038353436.1\|866193_867069_+\|polysaccharide-deacetylase	gnl\|CDD\|200569	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins. This family is represented by a putative polysaccharide deacetylase PgdA from the oral pathogen Streptococcus mutans (SmPgdA) and Bacillus subtilis YheN (BsYheN), which are members of the carbohydrate esterase 4 (CE4) superfamily. SmPgdA is an extracellular metal-dependent polysaccharide deacetylase with a typical CE4 fold, with metal bound to a His-His-Asp triad. It possesses de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. SmPgdA plays a role in tuning cell surface properties and in interactions with (salivary) agglutinin, an essential component of the innate immune system, most likely through deacetylation of an as-yet-unidentified polysaccharide. SmPgdA shows significant homology to the catalytic domains of peptidoglycan deacetylases from Streptococcus pneumoniae (SpPgdA) and Listeria monocytogenes (LmPgdA), both of which are involved in the bacterial defense mechanism against human mucosal lysozyme. The Bacillus subtilis genome contains six polysaccharide deacetylase gene homologs: pdaA, pdaB (previously known as ybaN), yheN, yjeA, yxkH and ylxY. The biological function of BsYheN is still unknown. This family also includes many uncharacterized polysaccharide deacetylases mainly found in bacteria.	8.58307e-78
NZ_CP019962.1\|WP_038353423.1\|846619_847522_+\|prephenate-dehydrogenase	gnl\|CDD\|223364	COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and metabolism].	2.17367e-60
NZ_CP019962.1\|WP_038353438.1\|868078_869191_+\|PDZ-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	8.272e-86
NZ_CP019962.1\|WP_038353435.1\|863703_864723_-\|DnaD-domain-protein	gnl\|CDD\|377797	pfam07261, DnaB_2, Replication initiation and membrane attachment. This family consists of several bacterial replication initiation and membrane attachment (DnaB) proteins, as well as DnaD which is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication. DnaD has been merged into this family. This family also includes Ftn6, a cyanobacterial-specific divisome component possibly playing a role at the interface between DNA replication and cell division. Ftn6 possesses a conserved domain localized within the N-terminus of the proteins. This domain, named FND, exhibits sequence and structure similarities with the DnaD-like domains pfam04271 now merged into pfam07261.	2.96308e-11
NZ_CP019962.1\|WP_038353425.1\|849074_849767_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.01452e-15
NZ_CP019962.1\|WP_038353434.1\|862739_863711_-\|ATP-binding-protein	gnl\|CDD\|235871	PRK06835, PRK06835, DNA replication protein DnaC; Validated.	7.78165e-108
NZ_CP019962.1\|WP_038353432.1\|857274_857565_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.00896e-25
NZ_CP019962.1\|WP_038353433.1\|861930_862722_+\|tRNA1(Val)-(adenine(37)-N6)-methyltransferase	gnl\|CDD\|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	2.10953e-84
NZ_CP019962.1\|WP_038353512.1\|869595_869958_+\|VOC-family-protein	gnl\|CDD\|366361	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.	2.38199e-14
NZ_CP019962.1\|WP_038353431.1\|856279_857278_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	8.23016e-150
NZ_CP019962.1\|WP_038353429.1\|853177_855763_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|187770	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I.	1.49778e-32
NZ_CP019962.1\|WP_038353437.1\|867251_868040_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293819	cd07733, YycJ-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YycJ and related proteins; MBL-fold metallo hydrolase domain. Includes the uncharacterized Bacillus subtilis YycJ protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	8.74235e-59
NZ_CP019962.1\|WP_052237395.1\|859838_861485_-\|oligosaccharide-repeat-unit-polymerase	gnl\|CDD\|367841	pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production.	7.96552e-07
NZ_CP019962.1\|WP_013378507.1\|864913_866191_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0
NZ_CP019962.1\|WP_038353426.1\|849781_851521_+\|hypothetical-protein	gnl\|CDD\|188234	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI. This domain is found in the C-terminal 2/3 of a family of CRISPR associated proteins of the Hmari subtype. Except for the two sequences from halophilic archaea this domain contains a pair of CXXC motifs.	6.77099e-22
NZ_CP019962.1\|WP_038353439.1\|870033_870291_+\|transcriptional-regulator	gnl\|CDD\|378913	pfam12674, Zn_ribbon_2, Putative zinc ribbon domain. This domain appears to be a zinc binding DNA-binding domain.	4.90607e-33

>NZ_CP019962.1|WP_038353432.1|857274_857565_+|CRISPR-associated-endonuclease-Cas2
MSANKKFNYNYAFVFYDVNEKRVAKIFKICKKYLVHYQKSVFRGDITPSKLIALKNELKKIIVEDEDFVCIVKLLNGNVFGEEVMGISESSEDLFL
>NZ_CP019962.1|WP_038353431.1|856279_857278_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MGTTKYLTSMGELSRKDNSLCFRVGSRNKYIPVEQVSEIYCMSEISLNTKLLDFLAKNEIIVHFFNYYGGYSGTFYPKEHLVSGRLLIAQVKAFENRRLGIAKAIVGGIGKNIDELLYHYYKHDKKDVKPTIDWIRHNLPDRLDKAEDIKQVLQAEGETWQRFYSSFQYFLPEDFIMNKRVKRPPDNPTNALVSFGNSLLYSKTVSVIYQTHLDQRISFLHEPSEGRFSLSLDLCEVFKPAIVFKTIFDVVNNRKLQVDKHFEKKLNYCILNEEGRKIFITAFEARLDSVFEHPKLKRKTSYRTALKLDCYKLIKDILEEKPFIPFNMGEKL
>NZ_CP019962.1|WP_038353430.1|855773_856268_+|CRISPR-associated-protein-Cas4
MKVNGTLVNYYFHCKRQCWLHGNRINLESNSEDVKIGKALHEIRAEESESTEISIENIRLDKITKDYLVEVKKSDADYEAVKWQVLFYLKVLKDKGIKRRGKIEFIEKKKAERKIYYEDLTQEREKELEEVICAIEILLESTFPPERETDKKCRQCAYFDYCVL
>NZ_CP019962.1|WP_038353429.1|853177_855763_+|CRISPR-associated-helicase/endonuclease-Cas3
MSFSKKVNSYFEKTPVFDFAGLIETDKPFYAHIKDEKRPEPLQDHLDLTLDYFDRLCREKHLESVFRRLEKNFFPDCARETVSLWREMILNTLYLHDIGKINPNFQRDKMQNKAFSRTESNNQNHSAFSARVYFDYYYQKIDTVEDDRQYDLFFVFLLLNTFVIQKHHGSLTEFSVFLERFENDLSETKEELGAYRNLTTFDTAAGLGLFFEERLNIIQKNNPWKCVDFYIYTRFLYGILVACDFYATSEYMNGAPVDDFGVLDDIAPYLDAFNADPVTKNIRKIKRDQAPDGDINILRSRLFLEAEENLLQNQEDNVYYLEAPTGSGKTKTSINLALQLIKKDRQLNRILYVFPFNTLVEQTRDSLEECFGKALGEKMGVINSITPIKKYGETTDEGEWDYTRQDKIDYEKSLLARQFMHYPIVLTTHVKFFEGIFGTSREAVFPLAHLANSVIILDEIQSYKNRIWKEIIIFLKAYARILNFKVIIMSATLPDLNRLSVGDDKVTYLVKNREFYFQNPLFKDRVELDFSMLELEPEETFDALLKKVLEVSNALRKNPDAENKIVVEFIKKASAVDFYNRLKDVVENDLVSIELMTGDDHKAERKRIISQVRTTENIILVATQVIEAGIDIDMDIGFKDTSILDAEEQFLGRINRSCRKKSAIVYFFNLDSPDMIYQKDIRKADKLKLTGANKAMQEILINKEFSKFYDCVLEGLEAQSRKENDLNLEVFRDRHLWTFNFPEIQERMRLIDDNRRKVSLFLNMRVNSEDGGMLVGSEVWKSYEALLQDAAMPYAEKRVRLSEVQAKMDYFIYEIDKSFADACVLCPDELLGELYYFKDGEPFFENGKFSREKLKCENDFL
>NZ_CP019962.1|WP_038353428.1|852450_853191_+|type-I-B-CRISPR-associated-protein-Cas5
MKALRFLLRGKTAFFKQPDVNTYCYYTYGCIHKVALLGIFGAMMGFRGYNGQTKVETYPEFYEKLKNLKVSICPLNEKGYIPKKVQTFNNSVGYASKEEGGNLIVKEQWLENPKWEITFLIDDSQSENLAERILESRFEFLPYLGKNDHTAVIENVEEVELEAETKRENLRVYGLFPADQGSLSEDSARRPFGREVPYKYQERLPVALEPACNQYVTQAMIYTNQRISLTDAASVFRLEERHYVFF
>NZ_CP019962.1|WP_038353427.1|851513_852449_+|type-I-CRISPR-associated-protein-Cas7
MNKRVYGVLGIKSIMANWNADFSGMPKAISTGEVFGSDKAFKYPMKKMWDEQGEKVLYIKSFKAEEDKKEGIKVRPRSLKERYEQIFEVEDLKKTNDNKAVLTNLFKAIDVKNFGATFAEGGNNTSITGAVQITQGFNQYDGHNVEEQQILSPFRDGTKEDAEQSTLGTKIVSNEAHYFYGFAINPTAYKDFVEMGVTEGYTEADYKKFKEAALIAATAFNTNAKVGCENEFGLFVETEADLYLPDLAQFIRFEKTEDNEKGVISLGLDKLLNAFGDRILSIEIYYNPLTTLLEGSLDKAEAYHIFTKEAL
>NZ_CP019962.1|WP_038353426.1|849781_851521_+|hypothetical-protein
MLKECLDVFKKIYEEKGESLILDTYVPAEGSYVLVDRDGAIKEIKELPKQKEPPEDFESFVEKDYLSALIDMNKPIDKKKVIHSNNYYAFWVKKDSIRPDKNGKVKLTQEIIDDYYGLLKAAENKYRKKGLELYEVVEAEIGKPDLEMIEKHKDWIKKNIFTIIEDNHLKDDKSYLKIYFDADREAYQRESRRYVIPNVYNTTDYNIPVGDKIFGLPNDNMGLNAKKPYLENKTRKNTMPYLISTEEVALQKKFFDYLYNQACLGKSNIYLNEKDGIIALSNNESLKQSFRGYYLRIQKGKELEVHDFDEVTGFEAEIEPIDLKQFIPVPEKNATDLIYEKVKKLEDVKILINSVFFKKFLTTNFFTDAKDIRLNDTKVKEELLRCRTGYFNWFFKGESVAVRSFFAESSLLLIKNSILNRHIPKAIEQFNVRESILNYFEGGERMEQTYEQIFERLSEMINSGTRSTIEDDAMYYYAAGQIAQFLLSLNQSSKPTPALVNPVINARTAQQLQVVLERLYKKYNYAIKYPQRISRLYSMFLLHIPENKKTDSQMLIAGYLDRSLVYEKKNKNEGESENE
>NZ_CP019962.1|WP_038353425.1|849074_849767_+|CRISPR-associated-endoribonuclease-Cas6
MQVYEGRLKVFLLKDISINSVQEKISALIDKALVQNEKMAVFHQKISYKNYCFSGFYPVESERVYRQDKIYTIQIRTIDENLMNYFKEHLINAYTEEMKSLNMTVRRIKKIPISRIYTLTPLIQKFDGGYWKEIVTLDEFERRLKENLIKKYNNFTGEKCDEDFELYTHLQFDNKGPISCPYKGITLLGDKITLQLAQNPMAQELAYMALGCGLGENNARGNGFCGYRYL
>NZ_CP019962.1|WP_038353424.1|847919_848690_+|TatD-family-hydrolase
MLADSHAHLDDERFENEVDTIIENARNAGIGFILNPGTEEGTSTRAVELSQTYDIVYAGVGFHPSDCVSFDKNKHPKMIRKWCELDKVLAIGEIGLDYYYDDGAPRDLQKKVFEEQIDLANELKKPIIVHDRDAHGDSMDMVKSCLDPNVGGVFHSYSGSVEMAKILLDFGLYLSIGGPLTFKNSRKAPDVVKYMPMDRLLIETDSPYLTPVPYRGKRNEPAYVRFVAEKVAEIKEITVEEVQETTFENCRRLFGV
>NZ_CP019962.1|WP_038353423.1|846619_847522_+|prephenate-dehydrogenase
METLKGKTVSFIGLGLMGGALAMGIRKQGPDKICAFDINEEVLEDALRKEVIDWGVSEPEGIRQILGVSDLVVICLYPQLALDFILEYMEDFKENAVITDITGVKKLLVDHLKGVLREDLDLILGHPMAGSEKEGFGNADDAIFKERNYILVPQPENKPENLSFIKEIIRNLGFVNIVETTAEVHDQKIAFTSQLCHVIASALVDSEDDLHITDYEGGSFGDLTRIAMINAGMWTELFICNKEALVDQIEKFEKSMDTMKKMIQAEDSDGLTEILSNVRKKRITMEVDRQNKTSAKTQKA
>NZ_CP019962.1|WP_052237395.1|859838_861485_-|oligosaccharide-repeat-unit-polymerase
MDKRNPESREVEELLEKKKDLFSLFSAFEDRIDHKISHLTDSAEIPVESIKQNITEPSGHYLEDPAEDLFEQAVLKSQQKTHEDGIIGFHTEEILGVEEALAELKKTDPVKPFKEEPVKEPAEVIEMPEDPVILTQAEPIPSFHSEILDAEPSEAAPQIPADIPLETEVSEPTLSVENQDNAGDLLKERIIRHDEEPMELPLGVDEPDLAEIDELLQEAEELMEDIPYSRYMAARAAVDKEVLDDNPLETSGNEEADFEAYDEDEEAFEEYEPDDSDVFETDSDEYDALFEEDDFEEDEDFDNEDSSLEEHSETEILFGEDEPEDEEFEEEYFSDEDEDEDIFQETVNDTIPEDATAHPFADFFEDTAETVKEDLFDELPLDEAPEEEYSDNNLDDVTYENVDAVSLGAFKYSAVSLRLILFVIAMLGMGVFTALSSGRFIAMDYLILFVLCIFVALTMDMSFNATLIVTVVIMLGCFGGLIYTFFTGGEVSMFHMFWFIIIPACLLTASGLVQKIKEVILANQLLNEELDSLYGEHEETLFENGEEE
>NZ_CP019962.1|WP_038353433.1|861930_862722_+|tRNA1(Val)-(adenine(37)-N6)-methyltransferase
MDNFIKENERLEDLGIKGLKIIQNPNYFCFGIDAVLLSWFASGAVRKKSRVIDLGTGTGIIPLLLYGRTGAQKIQALEIQENIVEMAGRSVACNGLEEKIEIIHGDIKNPGEQVRPTSYDVVVSNPPYMKVGHGLKNPMETKAIARHEILCGIEDVVIFAKRMLKDRGKLFLIHRADRLADIMSAMRDHRVEPKRLQFIHPYADKPANLVLVEGMKAGKPYLITEAPIVVYEKDGRYTQTINDIYGTPEPYDRIIENKTAPEQ
>NZ_CP019962.1|WP_038353434.1|862739_863711_-|ATP-binding-protein
MNERTKKVYDAFEQKQFRNKLELKRKQEALYVAIPKLAELDHAINLQGIRMTREVSRKNPDAISEFRQSVEALKKQKEALLLENGYPLDYLTLRYDCPICKDTGYVDGQVCSCLKQELIRAAFNNYDLNVHAQSENFDTFNPDYYADEAIETQNGSPREKMCRLKEKMQHYCLHFDSQNDNYLFTGKPGVGKTFMSNCVANALIGRGYNVIYITAAHLIQDIQSKIFNDNIPINEIYSPLFTADLLIIDDFGAEFYSDFSKKQLFEVINTRLQEHKKIILSTNLTMPQILENYDERLTSRIRGNFLNIVFAGDDIRLIKKRLG
>NZ_CP019962.1|WP_038353435.1|863703_864723_-|DnaD-domain-protein
MNQFKFIIDNDNMAMTPVENIFINHYMPRARGDYVKVYLFGLKHCFNHSLEPIDNLALSKLFDLTEGDVIKAWEYWEKEGILSLEYVGTKDVIVTYYNISAKLMSHHTKTEAETKKTEVLQREDPDSMEARVAHMYSKIQQMYGSRTITQKETQMFKNWITEYHFTPETVILLVEYSMNLIGKKEKPFTAKQIINYLKSVAEGWYKADIREAAEADAYIRKSAGEQKLVYDVFKYLGLRRAPIAWEKEMIIRWADDYHFDSDIITAAMQRSSKQDIRYIDAILKRWFQKGYTSLEEINAEPKKGHHQSKGDVVISEDRKKVYEELDQLDEAWLWSDDNE
>NZ_CP019962.1|WP_013378507.1|864913_866191_+|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MDTFIIEGGHPLNGEVAISGAKNAVLGIIPAAILCSCSSKIDNVPDIKDVNKIVAILEKMGAEIYRENDTLIINTDKPINYDCSEYEEETGKMRASYYLLGALLGRYHKAIVPLPGGCNIGDRPIDQHIKGFEALGAKVLIEHGQVKMTADRLIGADIYLDVVSVGATINIMLAATRAEGMTIIENAAKEPHIVDVANFLNLMGANIKGAGTDTIKIKGVDEMHGCEYSVVPDQITAGTYMMAAAATCGNVLVKNVIPKHMEAVTAKMREMGVEIIEEDNGIRVIGKENIKGCKVKTLPYPGFPTDLQQPMAVLMSIASGQSVITESIFENRFKYVDELRKMGAEIAINGRVANITGVPTLSGTKIKATDLRAGAAMVIAGLIAEGETRITDIQYIDRGYEKLESNIRSLGGIIRREAIEKKVED
>NZ_CP019962.1|WP_038353436.1|866193_867069_+|polysaccharide-deacetylase
MKTRKRRRIRFKPRFYVWVAALAAVLMTAVFFIATHPAKKLEKNSQTALQAVETLQTALSNAAEKGSSALQSEESKEQEAIKERIRNGDTDGLKVVFMTFDDGPSEHTNEVLDILKKYHIKATFFTNGRDNEVARAAYKRIVDEGHTLGNHSWSHKYDLYKNPPAFYEDVEKLDAFQLEVTGKAEISHMFRFPGGSLNANAKCIQGILDRGYNYVDWNSSAGDGGGNPASTDAVVNKIMSEVHQHNVSTVLCHAELRDTTRAALPQLFETLKAEGYTFLPMESDLSYPRQV
>NZ_CP019962.1|WP_038353437.1|867251_868040_+|MBL-fold-metallo-hydrolase
MKFCSLYSGSSGNSLFVSHSKTKLLIDAGLSGKRIEQALCSIDELPAQLGGILVTHEHRDHIHGVGVLSRRYDLPVYANFATWESMRDSLGKIAEHNVRVFETGRAFVIGDLQIEAFNTSHDAVESVGFTIDSGCSSVGVATDTGVITPRIMEALKGRDLVVLESNHDPAMLEAGRYPFPLKQRIKGNHGHLSNEICGETVCTLVKEGLDKVVLAHLSEENNYPLLAYQTTARILEAEGIQPGEDLSLVVASRKNSSEIYEL
>NZ_CP019962.1|WP_038353438.1|868078_869191_+|PDZ-domain-containing-protein
MYENNEKPKRGSHVPAAIAGGVVGGIIVAIILVAVLYFTGTLGGGTRTETVAGQKVIVNDVNVDSQVEAVAQVVPESVAGIETTMTENTMMGTQEAVGVGSGFIVTSDGYIVTNQHVISDNPKEIKVSLADGNNYTAQKVWADSSLDMAIIKIDAKNLPAVTLGDSDNLKVGEVAIAIGNPLGLQFERSVTAGIISALNRSLVVDSSLVAEDLIQTDATINKGNSGGPLVNASGEVIGINTYKNAQGEGMGFAIPINVVKPILNQVVTSGSFTPTVIGISGYDKQQAAYYNDAEPIDKGIYVASVQAGGGAANAGIQKGDILLTIDGKDVNTMLKMKEILYGHKPGDTVKITYERGGQTKEADVTLQAGN
>NZ_CP019962.1|WP_038353512.1|869595_869958_+|VOC-family-protein
MKFSFVTIHVNHLGESIRFYEEILGLKVLRRFEAGPEREIAFMGGDGAELELIGDARGSEMNVNEKISLGFEIASVEECMETLQKKGVPVFSGPFQPNPKTRFFFIQDPDGVMLELIEQN
>NZ_CP019962.1|WP_038353439.1|870033_870291_+|transcriptional-regulator
MEKFCQSCGMPMSEEVCGTNADGSANSDYCQYCYEKGAFTAPDMSMEEMIEICVGPMVESNAEMTEEQARGMMKEFFPGLKRWRA

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Crispr_ID: NZ_CP019962_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019962_2

1198713-1199725

Orphan

III-B

Consensus_repeat	Method
GTTGAAGATTAACATGAGATGTATTTAAAT	PILER-CR
GTTGAAGATTAACATGAGATGTATTTAAAT	CRISPRCasFinder
GTTGAAGATTAACATGAGATGTATTTAAAT	CRT

15 spacers

The CRISPR arrays of NZ_CP019962_2

>merge|NZ_CP019962|2|1198713-1199725|PILER-CR,CRISPRCasFinder,CRT
GTTGAAGATTAACATGAGATGTATTTAAATTTAATCCTGTTAATAAACTGCTGTTTTTTAGTCATCGTTGAAGATTAACATGAGATGTATTTAAATGAATGGAGGTAAGGATTGATGGACAAAATTAATTGGGTTGAAGATTAACATGAGATGTATTTAAATTAACCCACGGCTCCCATAGCATTACAATCGAACGCTGTTGAAGATTAACATGAGATGTATTTAAATCTGAAAGGGGAAACCGGGCCGCAAGGCGAACGTGGTTGAAGATTAACATGAGATGTATTTAAATGCAAAGAAGATGAAGGCTATACCCTGTCGGGCTTGTTGAAGATTAACATGAGATGTATTTAAATCTATCATTATAATATAAAAGATAAATAAAAAGACGAGTTGAAGATTAACATGAGATGTATTTAAATAAAGCCATGGGAAAGTCAAGGGGCTTGGTAAGTTGAGTTGAAGATTAACATGAGATGTATTTAAATCTGGATGTTTTGAATGCCTTTGAAAATGGACAACTTGTTGAAGATTAACATGAGATGTATTTAAATGCAACAGCAAACGTAACAAGTATCGGACTTAGACAAGTTGAAGATTAACATGAGATGTATTTAAATATAGCAAATAGATAGTTTAAAAATTCATCCATAGGTTGAAGATTAACATGAGATGTATTTAAATACGTTATCCCTGATCTGGCGGTCGAGCTGACGCAGTTGAAGATTAACATGAGATGTATTTAAATAAGTCACCAGAAGCCGTTAAACAGGCATTGGACGAGCGTTGAAGATTAACATGAGATGTATTTAAATTGTTGGTGACAATATTGACGGTTTTACGCACAAGTGGTTGAAGATTAACATGAGATGTATTTAAATGCTTTTTTATACTCTAAATCTGCATCAAGTTTTGTAGGTTGAAGATTAACATGAGATGTATTTAAATTTGCTTTAAACATTTTATTGTCTCTTTTTCATTTCGTTGAAGATTAACATGAGATGTCGCCATTG

>NZ_CP019962|2|2|1198713-1199660|PILER-CR
GTTGAAGATTAACATGAGATGTATTTAAAT	TTAATCCTGTTAATAAACTGCTGTTTTTTAGTCATC
GTTGAAGATTAACATGAGATGTATTTAAAT	GAATGGAGGTAAGGATTGATGGACAAAATTAATTGG
GTTGAAGATTAACATGAGATGTATTTAAAT	TAACCCACGGCTCCCATAGCATTACAATCGAACGCT
GTTGAAGATTAACATGAGATGTATTTAAAT	CTGAAAGGGGAAACCGGGCCGCAAGGCGAACGTG
GTTGAAGATTAACATGAGATGTATTTAAAT	GCAAAGAAGATGAAGGCTATACCCTGTCGGGCTT
GTTGAAGATTAACATGAGATGTATTTAAAT	CTATCATTATAATATAAAAGATAAATAAAAAGACGA
GTTGAAGATTAACATGAGATGTATTTAAAT	AAAGCCATGGGAAAGTCAAGGGGCTTGGTAAGTTGA
GTTGAAGATTAACATGAGATGTATTTAAAT	CTGGATGTTTTGAATGCCTTTGAAAATGGACAACTT
GTTGAAGATTAACATGAGATGTATTTAAAT	GCAACAGCAAACGTAACAAGTATCGGACTTAGACAA
GTTGAAGATTAACATGAGATGTATTTAAAT	ATAGCAAATAGATAGTTTAAAAATTCATCCATAG
GTTGAAGATTAACATGAGATGTATTTAAAT	ACGTTATCCCTGATCTGGCGGTCGAGCTGACGCA
GTTGAAGATTAACATGAGATGTATTTAAAT	AAGTCACCAGAAGCCGTTAAACAGGCATTGGACGAGC
GTTGAAGATTAACATGAGATGTATTTAAAT	TGTTGGTGACAATATTGACGGTTTTACGCACAAGTG
GTTGAAGATTAACATGAGATGTATTTAAAT	GCTTTTTTATACTCTAAATCTGCATCAAGTTTTGTAG
GTTGAAGATTAACATGAGATGTATTTAAAT

>NZ_CP019962|2|2|1198713-1199725|CRISPRCasFinder
GTTGAAGATTAACATGAGATGTATTTAAAT	TTAATCCTGTTAATAAACTGCTGTTTTTTAGTCATC
GTTGAAGATTAACATGAGATGTATTTAAAT	GAATGGAGGTAAGGATTGATGGACAAAATTAATTGG
GTTGAAGATTAACATGAGATGTATTTAAAT	TAACCCACGGCTCCCATAGCATTACAATCGAACGCT
GTTGAAGATTAACATGAGATGTATTTAAAT	CTGAAAGGGGAAACCGGGCCGCAAGGCGAACGTG
GTTGAAGATTAACATGAGATGTATTTAAAT	GCAAAGAAGATGAAGGCTATACCCTGTCGGGCTT
GTTGAAGATTAACATGAGATGTATTTAAAT	CTATCATTATAATATAAAAGATAAATAAAAAGACGA
GTTGAAGATTAACATGAGATGTATTTAAAT	AAAGCCATGGGAAAGTCAAGGGGCTTGGTAAGTTGA
GTTGAAGATTAACATGAGATGTATTTAAAT	CTGGATGTTTTGAATGCCTTTGAAAATGGACAACTT
GTTGAAGATTAACATGAGATGTATTTAAAT	GCAACAGCAAACGTAACAAGTATCGGACTTAGACAA
GTTGAAGATTAACATGAGATGTATTTAAAT	ATAGCAAATAGATAGTTTAAAAATTCATCCATAG
GTTGAAGATTAACATGAGATGTATTTAAAT	ACGTTATCCCTGATCTGGCGGTCGAGCTGACGCA
GTTGAAGATTAACATGAGATGTATTTAAAT	AAGTCACCAGAAGCCGTTAAACAGGCATTGGACGAGC
GTTGAAGATTAACATGAGATGTATTTAAAT	TGTTGGTGACAATATTGACGGTTTTACGCACAAGTG
GTTGAAGATTAACATGAGATGTATTTAAAT	GCTTTTTTATACTCTAAATCTGCATCAAGTTTTGTAG
GTTGAAGATTAACATGAGATGTATTTAAAT	TTGCTTTAAACATTTTATTGTCTCTTTTTCATTTC
GTTGAAGATTAACATGAGATGTCGCCATTG

>NZ_CP019962|2|2|1198713-1199725|CRT
GTTGAAGATTAACATGAGATGTATTTAAAT	TTAATCCTGTTAATAAACTGCTGTTTTTTAGTCATC
GTTGAAGATTAACATGAGATGTATTTAAAT	GAATGGAGGTAAGGATTGATGGACAAAATTAATTGG
GTTGAAGATTAACATGAGATGTATTTAAAT	TAACCCACGGCTCCCATAGCATTACAATCGAACGCT
GTTGAAGATTAACATGAGATGTATTTAAAT	CTGAAAGGGGAAACCGGGCCGCAAGGCGAACGTG
GTTGAAGATTAACATGAGATGTATTTAAAT	GCAAAGAAGATGAAGGCTATACCCTGTCGGGCTT
GTTGAAGATTAACATGAGATGTATTTAAAT	CTATCATTATAATATAAAAGATAAATAAAAAGACGA
GTTGAAGATTAACATGAGATGTATTTAAAT	AAAGCCATGGGAAAGTCAAGGGGCTTGGTAAGTTGA
GTTGAAGATTAACATGAGATGTATTTAAAT	CTGGATGTTTTGAATGCCTTTGAAAATGGACAACTT
GTTGAAGATTAACATGAGATGTATTTAAAT	GCAACAGCAAACGTAACAAGTATCGGACTTAGACAA
GTTGAAGATTAACATGAGATGTATTTAAAT	ATAGCAAATAGATAGTTTAAAAATTCATCCATAG
GTTGAAGATTAACATGAGATGTATTTAAAT	ACGTTATCCCTGATCTGGCGGTCGAGCTGACGCA
GTTGAAGATTAACATGAGATGTATTTAAAT	AAGTCACCAGAAGCCGTTAAACAGGCATTGGACGAGC
GTTGAAGATTAACATGAGATGTATTTAAAT	TGTTGGTGACAATATTGACGGTTTTACGCACAAGTG
GTTGAAGATTAACATGAGATGTATTTAAAT	GCTTTTTTATACTCTAAATCTGCATCAAGTTTTGTAG
GTTGAAGATTAACATGAGATGTATTTAAAT	TTGCTTTAAACATTTTATTGTCTCTTTTTCATTTC
GTTGAAGATTAACATGAGATGTCGCCATTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019962.1\|WP_038352042.1\|1206499_1207753_-\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
NZ_CP019962.1\|WP_038352053.1\|1191309_1192635_-\|B12-lower-ligand-biosynthesis-radical-SAM-protein-BzaD	unknown	unknown	gnl\|CDD\|275178
NZ_CP019962.1\|WP_038352041.1\|1207933_1208272_-\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NZ_CP019962.1\|WP_038352121.1\|1189051_1189726_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
NZ_CP019962.1\|WP_052237199.1\|1184269_1184980_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP019962.1\|WP_038352045.1\|1203479_1204751_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NZ_CP019962.1\|WP_052237198.1\|1187989_1188802_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378820
NZ_CP019962.1\|WP_038352051.1\|1194190_1195267_-\|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|376752
NZ_CP019962.1\|WP_038352050.1\|1195385_1196669_-\|B12-lower-ligand-biosynthesis-ThiC-like-protein-BzaB	unknown	unknown	gnl\|CDD\|275179
NZ_CP019962.1\|WP_038352046.1\|1202469_1203300_+\|phosphoenolpyruvate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|378168
NZ_CP019962.1\|WP_038352040.1\|1211309_1212413_+\|glutamine-amidotransferase-family-protein	unknown	unknown	gnl\|CDD\|238888
NZ_CP019962.1\|WP_038352049.1\|1196682_1197966_-\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|376689
NZ_CP019962.1\|WP_038352052.1\|1192647_1194204_-\|5-hydroxy-benzimidazole-O-methyltransferase-BzaC	unknown	unknown	gnl\|CDD\|378368
NZ_CP019962.1\|WP_038352054.1\|1189787_1191287_-\|B12-binding-domain-containing-radical-SAM-protein	unknown	unknown	gnl\|CDD\|223963
NZ_CP019962.1\|WP_038352044.1\|1204896_1205772_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP019962.1\|WP_052237197.1\|1208389_1210510_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|226477
NZ_CP019962.1\|WP_038352055.1\|1185264_1187931_+\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319781
NZ_CP019962.1\|WP_038352043.1\|1205778_1206360_-\|septum-formation-inhibitor-Maf	unknown	unknown	gnl\|CDD\|376812
NZ_CP019962.1\|WP_038352120.1\|1201229_1202444_+\|Tm-1-like-ATP-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|377709
NZ_CP019962.1\|WP_038352047.1\|1199896_1201084_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378168

Protein	Function_ID	Function_description	E-value
NZ_CP019962.1\|WP_038352042.1\|1206499_1207753_-\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	1.1478e-135
NZ_CP019962.1\|WP_038352053.1\|1191309_1192635_-\|B12-lower-ligand-biosynthesis-radical-SAM-protein-BzaD	gnl\|CDD\|275178	TIGR04385, radical_SAM_superfamily_protein, putative variant cofactor biosynthesis B12-binding domain/radical SAM domain protein 1. Members of this protein family are one of two tandem B12-binding domain/radical SAM domain proteins that occur in a genome context with a pair of homologs to ThiC (phosphomethylpyrimidine synthase, EC 4.1.99.17), an enzyme that performs a complex rearrangement involved in thiamin biosynthesis, and a putative CobT (nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase), an enzyme of cobalamin biosynthesis.	0
NZ_CP019962.1\|WP_038352041.1\|1207933_1208272_-\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	1.64182e-37
NZ_CP019962.1\|WP_038352121.1\|1189051_1189726_+\|HAD-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	3.07897e-18
NZ_CP019962.1\|WP_052237199.1\|1184269_1184980_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.9783e-11
NZ_CP019962.1\|WP_038352045.1\|1203479_1204751_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	6.55022e-12
NZ_CP019962.1\|WP_052237198.1\|1187989_1188802_-\|alpha/beta-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	1.68683e-76
NZ_CP019962.1\|WP_038352051.1\|1194190_1195267_-\|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	gnl\|CDD\|376752	pfam02277, DBI_PRT, Phosphoribosyltransferase. This family of proteins represent the nicotinate-nucleotide- dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) enzymes involved in dimethylbenzimidazole synthesis. This function is essential to de novo cobalamin (vitamin B12) production in bacteria. Nicotinate mononucleotide (NaMN):5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase (CobT) from Salmonella enterica plays a central role in the synthesis of alpha-ribazole-5'-phosphate, an intermediate for the lower ligand of cobalamin.	1.5431e-166
NZ_CP019962.1\|WP_038352050.1\|1195385_1196669_-\|B12-lower-ligand-biosynthesis-ThiC-like-protein-BzaB	gnl\|CDD\|275179	TIGR04386, thiamine_biosynthesis_protein_ThiC, ThiC-like protein 1. Members of this protein family closely resemble ThiC, an enzyme that performs a complex rearrangement during thiamin biosynthesis, but instead occur as one of two adjacent additional paralogs to bona fide ThiC, in a conserved gene neighborhood with a pair of B12 binding domain/radical SAM domain proteins. Members of the ThiC family are non-canonical radical SAM enzymes, using a C-terminal Cys-rich motif to ligand a 4Fe-4S cluster that cleaves S-adenosylmethionine (SAM), but that sequence region does not belong to pfam04055.	0
NZ_CP019962.1\|WP_038352046.1\|1202469_1203300_+\|phosphoenolpyruvate-hydrolase-family-protein	gnl\|CDD\|378168	pfam09370, PEP_hydrolase, Phosphoenolpyruvate hydrolase-like. This domain has a TIM barrel fold related to IGPS and to phosphoenolpyruvate mutase/aldolase/carboxylase.	0
NZ_CP019962.1\|WP_038352040.1\|1211309_1212413_+\|glutamine-amidotransferase-family-protein	gnl\|CDD\|238888	cd01907, GlxB, Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.	4.52396e-89
NZ_CP019962.1\|WP_038352049.1\|1196682_1197966_-\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|376689	pfam01964, ThiC_Rad_SAM, Radical SAM ThiC family. ThiC is found within the thiamine biosynthesis operon. ThiC is involved in pyrimidine biosynthesis. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis. Thic is a member of the radical SAM superfamily.	0
NZ_CP019962.1\|WP_038352052.1\|1192647_1194204_-\|5-hydroxy-benzimidazole-O-methyltransferase-BzaC	gnl\|CDD\|378368	pfam10050, DUF2284, Predicted metal-binding protein (DUF2284). Members of this family of metal-binding hypothetical bacterial proteins have no known function.	1.1971e-32
NZ_CP019962.1\|WP_038352054.1\|1189787_1191287_-\|B12-binding-domain-containing-radical-SAM-protein	gnl\|CDD\|223963	COG1032, COG1032, Fe-S oxidoreductase [Energy production and conversion].	2.63787e-30
NZ_CP019962.1\|WP_038352044.1\|1204896_1205772_+\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	6.45354e-14
NZ_CP019962.1\|WP_052237197.1\|1208389_1210510_-\|glutamine-synthetase	gnl\|CDD\|226477	COG3968, COG3968, Uncharacterized protein related to glutamine synthetase [General function prediction only].	0
NZ_CP019962.1\|WP_038352055.1\|1185264_1187931_+\|cation-translocating-P-type-ATPase	gnl\|CDD\|319781	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp. strain PCC 7942 PacL and Listeria monocytogenes LMCA1. Ca(2+) transport ATPase is a plasma membrane protein which pumps Ca(2+) ion out of the cytoplasm. This prokaryotic subfamily includes the Ca(2+)-ATPase Synechococcus elongatus PacL, Listeria monocytogenes Ca(2+)-ATPase 1 (LMCA1) which has a low Ca(2+) affinity and a high pH optimum (pH about 9) and may remove Ca(2+) from the microorganism in environmental conditions when e.g. stressed by high Ca(2+) and alkaline pH, and the Bacillus subtilis putative P-type Ca(2+)-transport ATPase encoded by the yloB gene, which is expressed during sporulation. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP019962.1\|WP_038352043.1\|1205778_1206360_-\|septum-formation-inhibitor-Maf	gnl\|CDD\|376812	pfam02545, Maf, Maf-like protein. Maf is a putative inhibitor of septum formation in eukaryotes, bacteria, and archaea.	3.58783e-95
NZ_CP019962.1\|WP_038352120.1\|1201229_1202444_+\|Tm-1-like-ATP-binding-domain-containing-protein	gnl\|CDD\|377709	pfam06792, UPF0261, Uncharacterized protein family (UPF0261).	0
NZ_CP019962.1\|WP_038352047.1\|1199896_1201084_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378168	pfam09370, PEP_hydrolase, Phosphoenolpyruvate hydrolase-like. This domain has a TIM barrel fold related to IGPS and to phosphoenolpyruvate mutase/aldolase/carboxylase.	3.43483e-145

>NZ_CP019962.1|WP_038352049.1|1196682_1197966_-|phosphomethylpyrimidine-synthase-ThiC
MTLLEKAKRGEITAEMQYVAEKEGVTPEFICEGVAKGEIVILHSSRENIHPVAVGKGLFTKVSASVGMYEADDTIDGEMAKIDAAVKAHADTLMDLSVRGPIEEMREKVLSTVDRPVGTLPMYETLSSAEAKYGTALDMTPDDLFDMIEKQASQGVAFIALHPGTTLSVIHRAKDEGRIDPLVSYGGSHLIGWMLYNNTENPLYTEFDRLIEICKKHDVVLSFADGMRPGCIADSLDHAQVEELVILGGLVRRAREAGVQVMVKGPGHVPLDEIATTVQLEKKLCYGAPYFVFGCLPTDAAAGYDHITSAIGGAVAAYAGADFLCYVTPAEHIGMPNVDDVYQGVMASRIAAHAGDVAKGHPQAVKWDLDMSVARRAMNWKEQFKLSIDPETAERVWRERSTSFTSECTMCGKYCAMKIVEKYLRAE
>NZ_CP019962.1|WP_038352050.1|1195385_1196669_-|B12-lower-ligand-biosynthesis-ThiC-like-protein-BzaB
MTQMLEARKGHITEEMEKVALIEGVTPEFVREGVAKGHIVIPKNKFRSRNKICGIGGGLDIKVNGLMGTSSDRNDMEMEAKKLQILEECGANAFMDLSTGDDIDAMRKQSLAISNIAAGCVPVYQASVEAIEKHGSMVAMTEDDLFDTVEKQCQEGMDFMAIHSALNWSVLNALKKSGRVTDVVSRGGSFLTAWMFHNEKENPLYEHFDRLLEILKATDTVLSIGDAIRPGANADSLDAAQVQGLVVAGELTKRALEAGVQVMIEGPGHVPLNQIATTMQLQKQLCYGVPYYILGFLATDVAPGYDNITGAIGGAFAGMHGADFLCYLTPAEHLGLPNEDDVRMGVRTTKIAADAANVLKRGGNAWNRSLAMSKARVARDEKAQIANALDPEYLESKLKSEPESHGCAACGKSKCPADIAAEFFGIA
>NZ_CP019962.1|WP_038352051.1|1194190_1195267_-|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase
MSALTLKDVIENIEPKDPDWESKACAHVESLAIPPWSLGQVLTLGVQLAGIKRTIHPCVDKKMILTMAADHGIAEEGVSAFPQEVTMQMVANIVAGGAGVNVLGKASGAEVRLVDMGVKEDMPDLVKKGAIIDAKIAHGSENFHKGPAMSREQAIAALEAGINIAAKMIQEEGVELLGTGDLGIGNTTPSAAILAVMGEYPLTSITGRGTGLNNAGLMHKIKIIRESIALNNPDKNDALDVLSKVGGYDIAGIAGMILGAAYNKVPVVVDGFISTAGALIAKGLCPTCADYMIASHQSEEPGHQMMWQTLGMHPLLNLNFRLGEGTGAAVAMHLVECAARCMNDMLTFEDAGVTNGLA
>NZ_CP019962.1|WP_038352052.1|1192647_1194204_-|5-hydroxy-benzimidazole-O-methyltransferase-BzaC
MASLKWDPNTSGGQYLEDLSTAYWYSESLFTALDMGLFELLEKGSAPLPELAKALNCNESSLARYLHLLKTLDLVDCYENSWYNTTLSSTYLIKGKPLYQGNSILWRREIKADWDTLKPALEAGRRVHFPPENISDTEMDARREEYITAMDNIVRLKVPEILECFGNSLKPGARILDVGAGSGAFALGFLEKFQDAQATLVDIRQVLPQTRKLVEKSPLDTKNRVLFHEQNILEPDWQLEGSYDIVILSNIVHAYAEEEISGILKTASQLLSEDGILLIHDFFLDHWDIKAAFSDINMFINTYNGKVFDSKWVDQALKNSGLSTTGLIPLQTDTAVIFAARESAALDSLTITPVQKILQPIKAIGFDKVMPYDPKDVVVAPFAKNKCKFGCRSWDKKHCSSNQEMSADETKAFVNSFSKALLLKSEPPTGDFQRKALRAETLAFKAGYYKAFVFWAGPCSICPDCDLTAPCNNHAHSRPSMEGSGIDVFATVKKAGESLKTLSERGEVIKYYALLLLE
>NZ_CP019962.1|WP_038352053.1|1191309_1192635_-|B12-lower-ligand-biosynthesis-radical-SAM-protein-BzaD
MKRILLIQAISMEGMDIERVYPIGIVTLASCIEKAGRYSLEIFDMNMAADPYSELREKLLSYQPDIIGISLRNVDPLGNRTTSLIVPFAITLSFIRHYLPDITLMAGGTAFSLFPERLMREFPEIDLGVAGEAEEIILPLLDSIDNPPKLPGLVYRENGEVKMVPPVGKFDMGSYTMPNRELLDPREYLRVNKYVESVGVETKRGCCYNCGYCSYPLLSGCGMRCREPASVVDEIEFLHKEYGVSRIHLTDSIVNFPANHLDDICKELIRRKLDIHWSGFFRENLLTPENAPLYRDSGCECFSLSPDGLSQTALDILDKHLTVDEILHTAKVLSDVGITTVYHFLVNTPGDTWKTVDEGKALIDQIYDIHAASKTIGTIVLNLIRIMPNTKVEKLALENGVITPKTDLLFPTYYNPDPFKTVRYDLEIYHNKRNIFMWQDA
>NZ_CP019962.1|WP_038352054.1|1189787_1191287_-|B12-binding-domain-containing-radical-SAM-protein
MKRILLLEHPRTPGEDRQNDIANTTLSSCLNSGYLAAVLLEKGYQPAIVEGYMENLSYEAIEARIAAHKPEVLGIHLVYNWEDNHTLYDFIARVKAKYQISHVTVYGYYPTFAYEEILDRCPDIDTCMLGENEITIINLMANLPDYRGLKGLAYRGKDGYKASRGELVRDLDSLPFPLRKAASYPGGEVNIFGSRGCYGGCTFCYINPYYGADEMHCPKWRGRSPENIIAEIDQIIAQTDYRYFYFTDPNFYGPGKAGKERVLKLAALLKERNIRFGIEARANDIEPETTRALVDAGLQNILVGLESGKDESLKRLNKYTTVADNENALRVLREAGIEPSVGFIMFEPDSTINDLKINLEFLKRNALLETLEISVNVLYHHQIILAGSSSYHDLLAAGRLNISEHSTYEANTNYVNPSVATMAKMMRDITNHIFDYMHDTWQKSASGDPETVARYQAINHLLVDGFENALKLLEKGDITEAERQDWVRCFNAEIDKITA
>NZ_CP019962.1|WP_038352121.1|1189051_1189726_+|HAD-family-hydrolase
MLRAVFIDYTGTIMKEAGKDVEEMTMRLYKNSDIESPQAMLNYWWGKLKKYENESFGDAFLTEDEIVDKLLADCVEELNLQENLEEAHELCRRFWMYAPAFEDAKPFFENCPLPIYVITNNGVRYVGEGMRHKALEPAGIICGDMARAYKPHRELFEKALEISGCSAQEVIHIGDSMASDVAGARAAGIRPILLDRKGTQETDGVMVVRSLDEALAFIVKELEQ
>NZ_CP019962.1|WP_052237198.1|1187989_1188802_-|alpha/beta-hydrolase
MKKEKIMQMIQAYDGLNLYMTTDTPESPRAVVIISHGMCEHSGRYAAVTQKLFDRGFKVYRYDLRGHGKSEGERGFYSAPDEITEDLHRIVDIASEENPGLKRFLLGYSMGGFAVADFCTKYPDKAEGAILFDAATRDNLGGFSRISQSLDPLTRFPNKLAKRLTSDPEVTAAYKTDPLNASYFTAGLSQRLTLGIQQLTANPTFCLPVLLLHGEKDTLVDPSDSTDFFAQIASEDKQLKIYGNTQHEIFNESVKNQVMADVTRWIENRL
>NZ_CP019962.1|WP_038352055.1|1185264_1187931_+|cation-translocating-P-type-ATPase
MDNHRQKPWHALPAKDVFAGLQTSEEGLSDAEAAERLRKNGRNVLRSKPPRSIAQMLWSQITDPMVLILIGAAIFSAVLREWTEAGVIFTIVVLNALIGIVQEKKAQSSLEALKNMSAPTARVLREDEESVVPASELVTGDIVFLSDGDMVPADLRLIDSANLKVQEASLTGESVPSEKDADELFPERCVLGDRGNMAYTSSIVTYGRATGVVVATGMNTEVGNIAGMLDSQDETDTPLKRKLGAVGKTLTIIGVIVCVLIFAIGAIYHRPLIPQFLVAISLAISIIPEGLPATATIVMALGVQRMAKRNALIRKLPAVETLGSATVICSDKTGTLTLNQMTVTQVAVNGDFEAGQAVMVDAAAEAHPEVYRELMVAADLCNDASFDPDQEGAIIGDPTEGALLYMTKAFGLDHDKMEDTYPRVFENPFDSDRKRMTTVHPVGGQLTAYTKGAVDELLPFCTRMLTEQGVRPMTETDRKNIQRLCLELSEKALRVLGFATRQLEEIPEDEEENIEHDLTFIGVVGMIDPPRKEVAESVRTCRKAGIRTVMITGDHKVTAIAIARELDIFQEGNTVLTGDELERLSECELEEAVKTTTVYARVSPADKLRIIKALKRSGEIAAMTGDGVNDSPALKAADIGVAMGVTGTDVAKEAADMILLDDSFTTIAYAIKEGRRVYRNIQKVIQFLLAGNIAEILTLFVATVFNWDAPLLAVHILWVNLATATLPALALGVDPASKNIMRHPPVKSGTLFERDLIFRVIRQGVFVAAMTLVAYWIGFKTDSHITGQTMAFCVLALSQMLRAFNQRSNTEPVWVRAEGANPWLILSFVVSAALMACILFIPPLQAAFKVTLLSGSQWLTVIGLSLLSVVQIEVVKWIKRMRGSKASR
>NZ_CP019962.1|WP_052237199.1|1184269_1184980_+|TetR/AcrR-family-transcriptional-regulator
MMCYNREKIRKNGRLREGSDRITYKKSKETNDRIVAVARKLFYEKGFKKTSVRQICKDAGINHSLIYYYFKSGKYGIAQYLINEHIRKCIKALSKHYSYQSDYLLYHLLLLRFLFREISQDPIELECYINAWEEEQIDRPFSIETYTIAKGLGMNVSYTDVQTAVLMSDYVWKGLYEAKQNGILELTDSEIRKRTDLTRWMNIGLDKAFILEKIAVAEELLRDIPIYHIHLILEDG
>NZ_CP019962.1|WP_038352047.1|1199896_1201084_+|helix-turn-helix-domain-containing-protein
MLSREVFLEKLRREIEAENHLIAVASGTGLTAKYAIQGGADFLLALNSGIFRGMGRGSLGGLLPYANSNDMVYEFGIRELIPLVGDFPVVFGLNATDPTRDMAAYLDEIRQSGFIGINNYPTIGLIDGKFREALEENGSAFEHEVEVFRMAHERGMVTVAFVFDENQAGAMLDAGTDILCVHLGLTQGGMLGAAKALSLVASKDRIEAIYALCDRQRPEVIKMLYGGPVKTPVDVQYMYQNTSAHGYIGGSAFDRIPTEKSLMNITKAFKTTDDIDESDLMSKMLNGITKYYDYTGFIKEYVKENYMNEISFLDLAKVCHVSRSHLSALFKKEVGCSFPEYLVNFRIHKAAKLLKEENLRVSEVAELVGYQDVAHFSKIFKKYMGVSPKTVKHKT
>NZ_CP019962.1|WP_038352120.1|1201229_1202444_+|Tm-1-like-ATP-binding-domain-containing-protein
MKTIAIAGTFDSKGHEYAYVKDLIESLGLNTLTINTGVFEPVFEADVSNEEVAKAAGADIKEIAAKGDRAYATEILSKGMEILVPKLYQEGKFDGIISFGGSGGTSLVTPGMRKLPIGVPKVMVSTMASGDVSNYVGTSDIVMMPSVVDVAGLNSISTKIFANAAFAIAGMVKFEDTHVIEKKPLVAATMFGVTTPCLTAAQEYLEARGYEVLIFHATGTGGQSMEALVEGGFIEGVLDITTTEWADELVGGILAAGPHRLEAAGKMGVPQVVSVGAVDMVNFGPMDSVPEKFRGRNLYKHNPMITLMRTTTLENKEIGHVIAEKLSAAKGPATIMLPLKGVSGIDAEGEPFYGPEEDKMLFDAIRSEVNRDVVDLEEFDLHVNDKEFAEAAAQKLIDLMQAAK
>NZ_CP019962.1|WP_038352046.1|1202469_1203300_+|phosphoenolpyruvate-hydrolase-family-protein
MNQQTRAEIVKMYKEQRAKGDILVGVGAGTGITAKSSERGGADMLIIYNSGRYRMAGRGSLAGLLSYGDANQIVVEMASEVLPVVKDTPVLAGVCGTDPFRVMDVFLKELKDMGFSGVQNFPTVGLIDGVFRQNLEETDMGYDLEVEMIRKAHELELLTTPYVFDPDQARKMAEAGADILVAHMGLTTKGTIGAKTALTLDDCVVKVRDIMEAGREVNPDIMVICHGGPIAEPEDAKYVIDRIDGIDGFFGASSIERFAAEKGITAQTEAFKEIKK
>NZ_CP019962.1|WP_038352045.1|1203479_1204751_+|hypothetical-protein
MKKKSMATTVAVMSVIALFVFGCVQYVSANDTNEPVTAADGSVTLTSNERIQGDMTIREGSAEGDIYVRNTQVDGDIFVIPDADSKTVHLENTSFQALVVNKTGTIVTLDKTSHGNSFYVSSPAAAEIGGKIPEVKISQVAGGSNLTITPDAGVDQMVIDGQQTEVTINSSMKKVVVSPGAAGCRLNINAPVETLDLNARVDAVVGANIQTMLLTDSAKGSNVTLANGAVIDNFASEAQMTLGGDGSINTMYVNSPANITGSVTTGKINVLNHPIERKAEGNAINMDPNASPFQMSQPPLPMITQSLEQPENRKAEPSSASQSTENAAPRQEVTAAPEQTVTPSAPETPAATPTPEPAPAPAPTPEPTPEPAPEPEPAPEPAPEPEPTPEPAPTPDQTPSNDESEAAPQPTAVVVETDDATVR
>NZ_CP019962.1|WP_038352044.1|1204896_1205772_+|DMT-family-transporter
MMRNSKSIIYGSFIILQCMFWGLGNPVAKIGMETISPFYCLALRFLIAFIICYGLFRKKIKTQVNKNNFKDAVAISIFNAAAFIFSTLALIYSSATIAGFLMALAVIFTPFMAYIVLGRKLKKRTLIFVGLVVLGLYFLCGSQGGFSFGIGELLALMSSISYAATITYSSKHVTNIGPEVLSTIQAGVAAVICFVFAFLLEDGQVLTQVGLTGWFAVVYLALGCTVIAYLLQNVALKHLSAVFVSLALCSEPIFTAFFSFFLLGERLTLSGVFGAALIMASIVLASLFNGE
>NZ_CP019962.1|WP_038352043.1|1205778_1206360_-|septum-formation-inhibitor-Maf
MKIILASASPRRRELMTLAGIPFEARPVDADETIICCTPPEGAVMMLATRKAQLAAEQFPDDLIIGADTVVAAGKHIYGKPATKEDAFEMLSALSGKTHQVFTGVCIYTKSGERNAFCTRTDVSFFPLSEDEIRAYIATGEPMDKAGAYGIQGKGALLVEKINGDYYNVVGLPISRLIRELKSFEAQISPPQR
>NZ_CP019962.1|WP_038352042.1|1206499_1207753_-|ammonium-transporter
MEMQQLADIVWVFLAACLVMFMQPGFAMVETGFTRAKNAGNIIMKNFVDFMVGSVLFLCVGFAVMFGGDSAFIGTSGFFNPTSLSLEQFDAVTPELFIFFQTVFCATAATIVSGAVAGRTKFTAYCICSAFVSLIIYPVSGHWIWGGGWLAQMGFIDFAGSTAVHSVGGWVALMGAVMVGPRIGKYNKDGSANAIPGHSLTLGALGVFILWFAWFGFNCGSTLAVNGDIGHIAMTTNLAACAGGLTVMFFTWLRYGKPDVSMTLNGVLAGLVGITAGCQVITLWGALLVGLICGITVSLLVPFIDAKLKIDDPVGAISVHGGCGVMGTLLVGLLANYAPGTEDAVTGLLYGGGASLLGVQLLGIIAVAAWALVTSGVMFFIIKKCHGLRVPRVVEIEGLDVHEHGCEAYADFVSRIQ
>NZ_CP019962.1|WP_038352041.1|1207933_1208272_-|P-II-family-nitrogen-regulator
MKKLEIVVKPDMLEDLKDLLNTCDVQGMMITNIMGYGNQKGFKKSYRGTSYTVNFLPKIKVETITDDETADIIIKLVTDRLTTDEIGGGKIFVYDVSDVIRIRTGETGSDAL
>NZ_CP019962.1|WP_052237197.1|1208389_1210510_-|glutamine-synthetase
MSEELEVKDCKNDVIDLFGSKVFNITVMRKRLPKHIYKSMMSTIKEDTPLDENVAEVVANAMKDWALEQGATHFTHWFQPMTGITAEKHDAFISPTEEGKVIMEFSGKELIKGEPDASSFPSGGLRATFEARGYTAWDPTSFAFVKGTTLYIPTTFISYSGEILDKKTPLLRSMKVISDEAIRILRLFGKTDVKKVTTTVGAEQEYFLIERDMYKKRKDLILTGRTLFGSKAPKGQEKEDHYFGRIRGRVCHFMRDVDRELWELGIPSKTRHNEVAPAQHELAPVFSTSNLATDNNQLIMETLQRVAFRHDLQCLLHEKPFAGVNGSGKHNNWALSTDTGENLLNPGKTPSENLQFLTFLVAVIEAVDRYPELLRCTVASAGNDHRLGANEAPPAIVSIFLGDQLTPALKSLETGKPVEEAKDLVMDLGVDAVPNFIVDATDRNRTSPFAFTGNKFEFRMLGSNQSIAGPNIALNTMVAEVLGEFADKLEAADDFETALIDLLRESLKEHKRVVFNGNNYSEEWVEEAERRGLPNLKATPDAFATYCEPKNVELFDKHGIYTHGELDARQEIHFEDYSKTLNIEALTMLTMAKREILPAVLDYTKDLANILTQKKALGDFIDATAEETVLQNVSKLSGSLVKKVEILDKTVIEAQGIEDVQEQARFYQSKVIEAMESLRATADELETMVGEKYWPFPIYEDLLFYV
>NZ_CP019962.1|WP_038352040.1|1211309_1212413_+|glutamine-amidotransferase-family-protein
MLKKEGQIRIPSGCAISGIIHKKGKPVINGSQIVDSIAVMHDRSNGLGGGFAGYGIYPEYADSYAFHVFYDDFKARQETERYLDKYFDVVNLSRIPVRKNKNIKDEPLIWRYFVDPIFTKIQEEKGEIDEEKFIVDTVFYINTYIDGAYIFSSGKNMGVFKAVGFPEDVGDFYKLEEYDGYCWTAHGRYPTNTPGWWGGAHPFALLDYSIVHNGEISSYDANRRFIEMFDYKCTLLTDTEVITYIIDFLNRKQGFDFEDIASIIAAPFWEEIEKMQPERARRFKTLRNTFASLLITGPFSIMCGFTDGLMALNDRLKLRSMVAGEKDDVVYIASEESAIRAVCPDVGNIWAPKGGEPIIVRVNREGE

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Crispr_ID: NZ_CP019962_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019962_3

2905417-2905513

Orphan

Consensus_repeat	Method
GAGGGCAGAAAAACAAAGATAACCAGCGAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019962_3

>merge|NZ_CP019962|3|2905417-2905513|CRISPRCasFinder
GAGGGCAGAAAAACAAAGATAACCAGCGAACCATTATGGCCAACTGGAATGCGGATTTTAACGGAAGAGGGCAGAAAAACAAAGATAACCAGCGAAC

>NZ_CP019962|3|3|2905417-2905513|CRISPRCasFinder
GAGGGCAGAAAAACAAAGATAACCAGCGAAC	CATTATGGCCAACTGGAATGCGGATTTTAACGGAA
GAGGGCAGAAAAACAAAGATAACCAGCGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019962.1\|WP_038350721.1\|2914461_2915331_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|225544
NZ_CP019962.1\|WP_052237028.1\|2908395_2909682_+\|chloride-channel-protein	unknown	unknown	gnl\|CDD\|238233
NZ_CP019962.1\|WP_013379507.1\|2901020_2901515_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|376377
NZ_CP019962.1\|WP_167617982.1\|2909739_2910624_-\|Ig-domain-containing-protein	unknown	unknown	gnl\|CDD\|227779
NZ_CP019962.1\|WP_038350727.1\|2902404_2903793_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235611
NZ_CP019962.1\|WP_038350720.1\|2915921_2917622_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|274983
NZ_CP019962.1\|WP_133964781.1\|2895247_2895652_-\|BTAD-domain-containing-protein	unknown	unknown	gnl\|CDD\|198111
NZ_CP019962.1\|WP_038350732.1\|2893777_2894566_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
NZ_CP019962.1\|WP_038350722.1\|2912993_2913692_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP019962.1\|WP_013379511.1\|2903806_2904835_+\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP019962.1\|WP_038350725.1\|2907115_2908372_+\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856
NZ_CP019962.1\|WP_038350723.1\|2911743_2912967_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP019962.1\|WP_038350726.1\|2905564_2907097_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NZ_CP019962.1\|WP_013379522.1\|2915683_2915935_+\|(2Fe-2S)-ferredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239278
NZ_CP019962.1\|WP_013379519.1\|2913675_2914383_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|227008
NZ_CP019962.1\|WP_013379508.1\|2901549_2902257_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|181800
NZ_CP019962.1\|WP_038350731.1\|2894633_2895233_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019962.1\|WP_038350729.1\|2896392_2897088_-\|hydrolase	unknown	unknown	gnl\|CDD\|234811
NZ_CP019962.1\|WP_038350728.1\|2897288_2901002_+\|phosphoribosylformylglycinamidine-synthase	unknown	unknown	gnl\|CDD\|130916
NZ_CP019962.1\|WP_013379499.1\|2893038_2893656_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357

Protein	Function_ID	Function_description	E-value
NZ_CP019962.1\|WP_038350721.1\|2914461_2915331_-\|extracellular-solute-binding-protein	gnl\|CDD\|225544	COG2998, TupA, tungsten ABC transporter substrate-binding protein [Coenzyme metabolism].	2.40475e-110
NZ_CP019962.1\|WP_052237028.1\|2908395_2909682_+\|chloride-channel-protein	gnl\|CDD\|238233	cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore homodimers with one pore per subunit without axial symmetry. Although lacking the typical voltage-sensor found in cation channels, all studied ClC channels are gated (opened and closed) by transmembrane voltage. The gating is conferred by the permeating ion itself, acting as the gating charge. In addition, eukaryotic and some prokaryotic ClC channels have two additional C-terminal CBS (cystathionine beta synthase) domains of putative regulatory function.	1.25511e-49
NZ_CP019962.1\|WP_013379507.1\|2901020_2901515_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	2.96018e-83
NZ_CP019962.1\|WP_038350727.1\|2902404_2903793_+\|amidophosphoribosyltransferase	gnl\|CDD\|235611	PRK05793, PRK05793, amidophosphoribosyltransferase; Provisional.	0
NZ_CP019962.1\|WP_038350720.1\|2915921_2917622_+\|4Fe-4S-binding-protein	gnl\|CDD\|274983	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3. See for descriptions of different groups.	3.24503e-58
NZ_CP019962.1\|WP_133964781.1\|2895247_2895652_-\|BTAD-domain-containing-protein	gnl\|CDD\|198111	smart01043, BTAD, Bacterial transcriptional activator domain. Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.	0.00257024
NZ_CP019962.1\|WP_038350732.1\|2893777_2894566_+\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	2.07383e-66
NZ_CP019962.1\|WP_038350722.1\|2912993_2913692_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	7.51583e-62
NZ_CP019962.1\|WP_013379511.1\|2903806_2904835_+\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP019962.1\|WP_038350725.1\|2907115_2908372_+\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
NZ_CP019962.1\|WP_038350723.1\|2911743_2912967_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.14674e-67
NZ_CP019962.1\|WP_038350726.1\|2905564_2907097_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NZ_CP019962.1\|WP_013379522.1\|2915683_2915935_+\|(2Fe-2S)-ferredoxin-domain-containing-protein	gnl\|CDD\|239278	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.	3.59767e-13
NZ_CP019962.1\|WP_013379519.1\|2913675_2914383_-\|ABC-transporter-permease	gnl\|CDD\|227008	COG4662, TupA, ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism].	3.48914e-56
NZ_CP019962.1\|WP_013379508.1\|2901549_2902257_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|181800	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed.	1.22885e-150
NZ_CP019962.1\|WP_167617982.1\|2909739_2910624_-\|Ig-domain-containing-protein	gnl\|CDD\|227779	COG5492, COG5492, Bacterial surface proteins containing Ig-like domains [Cell motility and secretion].	3.62849e-11
NZ_CP019962.1\|WP_038350729.1\|2896392_2897088_-\|hydrolase	gnl\|CDD\|234811	PRK00685, PRK00685, metal-dependent hydrolase; Provisional.	2.54441e-08
NZ_CP019962.1\|WP_038350728.1\|2897288_2901002_+\|phosphoribosylformylglycinamidine-synthase	gnl\|CDD\|130916	TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis].	0
NZ_CP019962.1\|WP_013379499.1\|2893038_2893656_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	2.12035e-13

>NZ_CP019962.1|WP_013379511.1|2903806_2904835_+|phosphoribosylformylglycinamidine-cyclo-ligase
MAQTDAYKAAGVDVEAGYESVKLMKADVQRTFNQYVLSHLGGFGGLIELPEGYKKPVLVSGTDGVGTKLMIAFMMDKHDTIGIDAVAMCVNDILCQGAKPLFFLDYIACGKNYPEKIAQIVSGVAEGCVQGGMALIGGETAEMPDMYSLDDYDLAGFAVGVVEKDEIITGQSIAEGDVLVGLPSSGVHSNGFSLVRKLLFKDLKMDVHTKVDELGGTLGEALLTPTRIYVKAVEDLLAPYGVKGMSHVTGGGFYENIPRMIPEGLCAKVDTAAIDTLPIFKFIQEAGNITDEAMYSTFNMGIGLVSALPADQADGFVQALKDKGEKPVVLGEVVRGDEKIIL
>NZ_CP019962.1|WP_038350727.1|2902404_2903793_+|amidophosphoribosyltransferase
MREDKFHDECGVVGVYCKSRETNCASYIYYGLYALQHRGQESAGISVNRDGRITTHKDLGLVADVFKGNVLKSMKGNLGIGHVRYSTSGEGGVTNAQPLTVSLKSTQIALAHNGNLVNDKALRDMLEDSGVVFQTTIDTEVMVDILARGLRHGVIEAIQRMVEIIKGGFALVITLEDKLIGVRDPYGLRPICLGKKDDMYMLASESCAIDAIGGELIRDLNPGEIVVIDENGIQSYGQNNWASKRACIFEQIYFARPDSVMEGRSVYQARHTAGRILARESPVEADVVIGVPDSGIPAAIGYAEESGIPYGMGLIKNKYSGRTFIQPNQKLREEGVRLKLNPLRDTIEGKRVVIIDDSIVRGTTSKRLVEILRSGGAKEVHFRVTSPPVSHTCHFGIDTPKRKYLIGAKKSVEEIRGILGADSLAYISLDGLNESVGGGTEYCRACFDGDYPMEVPVLKKDD
>NZ_CP019962.1|WP_013379508.1|2901549_2902257_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MQKLEQLYEGKAKKVFKTEDPDQFIIEYKDDATAGNGEKKGTIVGKGVINNKMTATIFKMLEEKGIPTHFIELLSDNEQLVKAVTIFPLEVIIRNTAAGSICKRLPFEEGQALEAPIFEFCYKNDDYGDPVINDNHATALKLATQEELDAIREMTMKINEILKAYFLEKGINLIDFKIEFGKTNDGQIVLADEISPDTCRFWDVNTGEKLDKDRFRRDLGGIEEAYEEMLKRVNG
>NZ_CP019962.1|WP_013379507.1|2901020_2901515_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MPKVAVIMGSDSDFDVVKKCLIALEKFDIEYDAEVISAHRNPDKIFSYVRSAEENGIELIIGAAGKAAHLPGVMAGLTPLPVIGIPIQTSFQGGLDSLLSIVQMPSGVPVATVAVNGAENAGILAAQMLSIKYPEIREKMKAYKETLDEEVAAKNEKLQAKING
>NZ_CP019962.1|WP_038350728.1|2897288_2901002_+|phosphoribosylformylglycinamidine-synthase
MIKRIFVEKKAGFNTEAQELAQTFQRILGIKGLSSIRIIYRYDVEGLEGELLENVKRTIFSEPNVDNIYEDTMAFGPEEQVFATSYLPGQYDQHADSAAQCIQILAGEKPLIKVAKVVAVKGDVSTEELGKIKQYMINPVDSQETDLGPRDTLTDKIKQPADIERIEGFTDFSAEALEAYRKKMGFAMSGADIAFVQKYYKEDEKRDPSLTELKVIDTYWSDHCRHTTFSTCIEAIDFERGPVTEAVEKAFESYDATRDALYGEDTDRPMTLMDMAVIGTKEIKKRGLIPDLDESEEINACSVNMTVDHDGVDEDWLLMFKNETHNHPTEIEPFGGAATCLGGAIRDPLSGRSYVYQAMRLTGAWDPRTPIEDTLPGKLPQRKISQEAAHGYSSYGNQIGLATGQVVEVYDPGFLAKRMEVGAVIAAAPKENVVRERPQPGDVILLVGGKTGRDGCGGATGSSKAHTEESIHESGAEVQKGNPVEERKIQRLFRNGDLARMIKRCNDFGAGGVSVAIGELADSLDIDLDKVPKKYEGLDGTELAISESQERMAVVVAAEDVDHFIEMGNAENLEVTQVAVVTDTGRLVMKWRGEEILNLSRDFLNTNGAAQYADVLVKEPETLCEEAETIDFTRKTKEVLSSLNAASQKGLAEMFDSTIGAGTVVMPYGGKYQLTPQDGMAAKIPVIHGDTTTCSIMTYGYTPELSKWSPFHGGIYCVLESLSKMVAMGGDFRKARLSFQEYFERLNKDPEKWGKPFAALLGAFEAQKAFGIPAIGGKDSMSGTFEDMTVPPTIISFAVEADKVQNVLSNELKKTGSSLYLFEVEQDDNKLIDYDKVMAMYDRIRGLNLEGKLLSAKAVSANGLVDALAKMAFGNKIGVDIADIDEARLFAPLYGSIIVETTETLDDAELIGKTTDASAITCKGESVDMDELIEVWESAMRSVYPESKTTEGKVQKIEYTGGPVTFAKEKFAAPQVFIPVFPGTNCEYDTAKAFENAGAKPEIVVFRNRTADDIAASVKEMADAIRQSQMIMIPGGFSAGDQPDGSGKFIAAVFRNPEIRDAVMELIKNRDGLMLGICNGFQALIKLGLVPYGEIVDIEPEMPTLTYNTIGRHVSTIPMTKVVSNLSPWLAGAKVGETYRIPMSHGEGRFIASDAVMEELIAKGQVATQYVDFDGNATMDGAFNPNGSTCAVEGITSADGRILGKMGHSERIGKGLYKNIPGEKDQLIFKSGVEYFK
>NZ_CP019962.1|WP_038350729.1|2896392_2897088_-|hydrolase
MKIIYLHHSGFIVELERMTLIFDAITNIPPHFLRKGRKNYFFVTHSHQDHFSQKILSYGSDYDTTYIFSDDIPEKGGRDIHYIAPYQKISFPGIEIETFGSTDLGVSFFVQAEGKNIFHSGDLNWWDWDTASHPNINPEVEERDFKAVIQKIEEQIGKHKMDVAFVPVDSRLGGSACRAAEYFIDKLHPKVLIPMHFWEDFSVIRTLADRETGSGTEIPLFEDRNTVIGNY
>NZ_CP019962.1|WP_133964781.1|2895247_2895652_-|BTAD-domain-containing-protein
MAETIWPGRSESQAMCNLYKTLEWFKNLRQKDIDIPIISKRGTIGLDSRQIYSDLWEFDTHYYNRSQLQNCQRAVELYTGSVLSGAPYDWIAAYEAYYELSCAEMLELLSQQLEKDKTGQFNFYQRKLKILTET
>NZ_CP019962.1|WP_038350731.1|2894633_2895233_-|hypothetical-protein
MPKYTQQNQASNCGAFSIAYLLWELEKAAYQYDHPEDALAFIDAIYNAVKFGDSIYKFDDPVKSIMSSEHCSPVKMVNYLENQGIKTTCLIPVDPPFIAFIRAVNTSTLKPLFNFTYEDPLKALRPNQYTISMAVNTFDITDSDMLLHYVLIKKHAKNATCTVYDPSDGEENTDQSLSVGSPIAGSPWLYTGILIAVAS
>NZ_CP019962.1|WP_038350732.1|2893777_2894566_+|SDR-family-oxidoreductase
MKKLEDKVAIVTAATAGIGLASAKKLAQNGALVYIAGLEDELAEKALAECSEEKLNVKFHPFNAFDYEGYHVMVEHVAKEEGRLDILVNNFGIGIPTKDFDILTGDPYAFFDILQKNIGSVYLPCKPAIRYMASHGGGNIVNISSIGGLLPDVSRLGYGVSKAAINYLTKAIALQFGSKNIRCNAVAPGMIGTDAVKKSMTGDFQKAFLRHVPLGRVGEPEDIAKAVLFLASDDSSFITGHILDVAGGFGIGTPEYADAVKG
>NZ_CP019962.1|WP_013379499.1|2893038_2893656_+|sigma-70-family-RNA-polymerase-sigma-factor
MDYKEIDRWVLRAQKGDGEAMAFLERMFRPLMLASADKARPENYSFEDCLQDARLFFLEGIRCYDGTRGSGFAAYIKTYLYRSLQNKRRKCWRRLVRDISGDGASREEDEGTLFDTLPDLSADIMGNYTHREELAALSEALGELTPEELALLRAVYGQGQTIRGASQSLGVGYSTVQYRHRRLLDILRKRLTGVPSKKELVKKRT
>NZ_CP019962.1|WP_038350726.1|2905564_2907097_+|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MRALISVSDKTGIVEFAQKLAGMGWEILSTGGTAKALREAGVDVIGVSDVTGFPECLDGRVKTLHPKIHGGILNIRDNEDHQRQIKELGITPIDLLVINLYPFKNTILKEGVAFEDCIENIDIGGPTMLRSAAKNFNDVTVVVDPEDYDVVLNELEKDGATSYDTRYRLALKVFETTAAYDTMISDFLRKRVGGDVLKDTVTMTYEKVQDLRYGENPHQKAAFYKEIGVTRGALTAAEQLQGKELSYNNINDTNGALEILKEYTDEPTIVAVKHANPCGVASAETISEAYRKAYEADPTSIFGGIIASNREIDADTAKQMVEIFLEVIVAPAYTDEALEVLGTKENLRVLKLDDILYSEPGYETKKVLGGLLIQERDTKDYEKLEVVTDRKPTDKEMEDLLFAWKAVKNTKSNAITLAKDKCMVANGPGQVNRIWPLENCIEHGGEKVKGAVLASDAFFPFDDCATAAAKAGITAIIQPGGAGRDADSIKVCNENGIAMVFTGMRHFKHS
>NZ_CP019962.1|WP_038350725.1|2907115_2908372_+|phosphoribosylamine--glycine-ligase
MKVLVIGSGGREHVLTWKIAQSPKVDKIYCAPGNGGMAKIAECVDLSVEDIDGCVKFAREKGIDLTVVGPEVPLVMGMTDAFEKEGMRVFGPNAKCAEFEGSKAFTKDFLLRHNIPTAAYKEYTDLNEIMKDIGVYGFPMVIKADGLAAGKGVLIVENEQEAKDGINMIMADHEFGAAGDKVVVEEFLTGREASMLCFVDGNVIVPMESAQDYKRAYDNDEGLNTGGMGTYSPNVLFDNAVLNKRIEETILTPIIEGFKADGMDFKGILFIGLMIENDMPKVLEFNVRFGDPEAQSVLMRMDSDLVDIMEACIDGKLADCDIKWKDEAAVTVVLASGGYPGPYEKGLEITGIEDVEGCEVFHAGTALRDGKLVTAGGRVLCVSALGDDREAARAKVYSQIDKIKFDGARYRTDIAKMD
>NZ_CP019962.1|WP_052237028.1|2908395_2909682_+|chloride-channel-protein
MGFACLFLNNLEESTVWNKIKKNIALGIFIAVLGAVVGAVVWFLLWLMNLGIDFLWIGLPGKFNIPVYNLIICGVGGLLVGLLQTKFGPCPSELSEDMAAIKQGKRLPYNNLPVIAVCALVPLIFGGSLGPEAGLTGVIAGLCFWLADRFKYAYEEVEDLAQVGIAATLGVIFHAPLFGFVNQVEDEKGGQAIPKNSKILLYFIAIFAGFGIYILLSGLFGGGMGLGRFGHITVGRNELLAMLPLALVGALCGILYFYFAKGVKVITAPLEKHKVLLGIIGGLVLGGVGMLLPFTMFAGEHQMGEMMEIWQTLPIWLLFLTGIVKLLMINICIGTGWRGGNIFPIIFSAVCIGYGFAALFPMVDATFCVAVVTAAVAGAIMRKPIAVVMLLIICFPVDAIIPMCVGAIIAASIPLPKRFRQMADAQGE
>NZ_CP019962.1|WP_167617982.1|2909739_2910624_-|Ig-domain-containing-protein
MDGTQVKVSADSKVLPDAELKVSSVSDEVKNKADQAVKNKLDPEAEILEILDIKAVDKTTNEEKQPEGGTVSVELDLNEKYKDNGDIKIVHFDDSKDEVNVVDNAVADKDSKTVSFEAPHFSYYAAVKTPVAATDVKLSNDYLKIQPDASTTLKATVKPVNVTNADVTWSSSDASVVTVDENGKVTAIKEGTASVTATTANGKTATCEIEVKALDSNEGAGTTQTYNDGGSGDGNIIKKLAATVTGTNPDTSIRQAALMNGDVPAWMIPSIIGLFAGGGILIGVIALIKRKRSE
>NZ_CP019962.1|WP_038350723.1|2911743_2912967_-|MFS-transporter
MNQQASTRDKDWKKRIILFLTSQTVSLLGSSLTQYAIIWYVTLTTTSGIMLTISTLVTFIPQVLISLFAGVWADRYNRKYLIICADALVALSTLGLAFSFFVGYRELWIIFLVSAIRSVGTGIQTPTVNALIPQITPKSMLMRVTGFNGSLQNMTMIVAPAVSGALLATVSVESTFFIDVVTAIIGISLLSFLKIPPHKRAESAKDTGTVSDLKTGILYAYRHSFIKVLLIFYALLMFLVTPTAFLTPLLIARTFGGEVWYLTANEVIYSVGAMIGGLLIAAWGGFKSRVTTIMVFSTLCGIFSLGLGLSPVFLVFLGFMLFVGLTVPFITAPITVLLQERVEEAMQGRVFSLVQIMAATAFPIGMTVFGPLADMVDVRLIIIATGILTALCGFVVYHNKILRSQEN
>NZ_CP019962.1|WP_038350722.1|2912993_2913692_-|ABC-transporter-ATP-binding-protein
MQIAIDKLTKTYHGKTVLSLDSLCLESGKIHGILGPNGSGKTTLMKSVAGLLAPTSGAITYNGLPGDEAVLKKLTYASHTPYLFAMSVYDNIAYPLKIRKYGKAAAAPIVEGLLQEFKIEEIAKQNAKKLSGGESQKTALARALSFSPDTLLLDEPTANIDPQSLKIIEAALIKRNREAGLTVIIITHNPSQAYRICDTLSFMDSGRLLFNGSVEAFKASDNPVIQDFITLN
>NZ_CP019962.1|WP_013379519.1|2913675_2914383_-|ABC-transporter-permease
MDYIINGFIEAFHLLISGDPEIYQIVGLSLYVSFSSTIYSTVLGVPLGILLGIKEFRGKRIVSRLLYTFMSFPPVIIGLFTSLVLARSGPLGHLKLMYTPTAMIIAQVILVTPIIMGIVFNDTTVNGQVVVTMGKTLGAGGRDILFLLIRELKASIMIALVTGFGRAVSEVGAVMIVGGNIKNYTRVMTTFIAMNNNMGEYAVSIAMGIILLVISFVTNSILYKYMVGDPYANRD
>NZ_CP019962.1|WP_038350721.1|2914461_2915331_-|extracellular-solute-binding-protein
MKKKLTLVLAALLTLAMVIGLAGCSSNNTAKTEKLEPGSNGEIIMATTTSTQDSGLLDVLLPKFEEETGIAVKVVAVGTGKAIEMGKNGEADVLLVHAKSQEEDFVKEGYGIERFDVMYNDFIVLGSKDDPAKLKEVAPNDAVKAFQTIAETQSEFVSRGDKSGTHTKELGLWEKAGVTPAGQPWYIESGSGMGDTLKMANEKLAYTLSDRATWLNMKDNLDLEVVVEKDDNLYNQYGVIVVNPDKVSAELNTDGAKKFQEWILSDEAQKAIADYKINGEPTFVPNASK
>NZ_CP019962.1|WP_013379522.1|2915683_2915935_+|(2Fe-2S)-ferredoxin-domain-containing-protein
MKEIHICIGSACHVKGSYQVVQRFKELVAERGLENEVELMGTFCLDACSDGVAVKVDDHIYTVKPEGVDQLFDQIMEGNNGCH
>NZ_CP019962.1|WP_038350720.1|2915921_2917622_+|4Fe-4S-binding-protein
MGVINFTKASCRNCYKCIRYCPVKAIKLMDNQAQIVEDLCIGCGNCFRICPQNAKYVASDVDSIRQWLEEGPVVLSLAPSFPAGFNAEDPLQVLSGLRALGFTVIEETAIGAEQVSKYYAKDYWGTKRHVITTSCPTVNMMIEKYYPDVVEYLSEVVSPMTAHGMMLKEKYPNAKVVFAGPCISKKMEAVDAARPIIDGVLTFDELDVWFKEEGINVSDMPTGGFDAAGCNVARFYPLAGGVEKTSIPGVQGVRRVIKIDGLKNCRDFLDDIGKLEGQYWIEMNACVEGCVNGPGNTHSPLVKYERIERVTDYINNNARKDPEAAEQAPDFSRGFAVEKKDPFAGVPEEAIEEILRQTGKFTPKDELNCGTCGYDSCREKAAAVYCGMAELDMCLPFMRNRNEAISNLIIASTPNAIAVLDKDFRIVDFNGAAEKLFKTAKTDVLHKNFVEVFDYNPFKKLDNVEGNYYSGRGLYTRGNIHFMEILTYIPGQKMYMGIFVDISREIKKERAYQKMQEETLDMAQKVIDKQMRVAHEIAELLGETTAETKVTLTRLQKVVGTREEEQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP019962_1	1.1\|857776\|36\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	857776-857811	36	NZ_CP019962.1	337646-337681	0	1.0

1. spacer 1.1|857776|36|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to position: 337646-337681, mismatch: 0, identity: 1.0

tttatcattggagagatttacgcccgcctgttcaag	CRISPR spacer
tttatcattggagagatttacgcccgcctgttcaag	Protospacer
************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019962_1	1.15\|858695\|35\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	858695-858729	35	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	166407-166441	6	0.829
NZ_CP019962_2	2.11\|1199397\|34\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199397-1199430	34	NZ_CP017565	Paraburkholderia sprentiae WSM5005 plasmid pl2WSM5005, complete sequence	190623-190656	8	0.765
NZ_CP019962_2	2.12\|1199461\|37\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199461-1199497	37	MN694200	Marine virus AFVG_250M858, complete genome	20140-20176	8	0.784
NZ_CP019962_2	2.4\|1198941\|34\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1198941-1198974	34	NC_022775	Lactobacillus phage phiJB, complete genome	1204-1237	9	0.735
NZ_CP019962_2	2.4\|1198941\|34\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1198941-1198974	34	NZ_CP017943	Phyllobacterium zundukense strain Tri-48 plasmid unnamed2, complete sequence	68626-68659	9	0.735
NZ_CP019962_2	2.6\|1199069\|36\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199069-1199104	36	NZ_MF547664	Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence	63170-63205	9	0.75
NZ_CP019962_2	2.14\|1199594\|37\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199594-1199630	37	MG065692	UNVERIFIED: Campylobacter phage C13, complete genome	52818-52854	9	0.757
NZ_CP019962_2	2.14\|1199594\|37\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199594-1199630	37	MK373796	Escherichia phage vB_EcoS_HdH2, complete genome	72530-72566	9	0.757
NZ_CP019962_2	2.14\|1199594\|37\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199594-1199630	37	MG387042	Salmonella phage SP3, partial genome	71293-71329	9	0.757
NZ_CP019962_2	2.14\|1199594\|37\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199594-1199630	37	NC_047754	Escherichia phage APCEc03, complete genome	68929-68965	9	0.757
NZ_CP019962_2	2.4\|1198941\|34\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1198941-1198974	34	NZ_CP017942	Phyllobacterium zundukense strain Tri-48 plasmid unnamed3, complete sequence	223810-223843	10	0.706
NZ_CP019962_2	2.10\|1199333\|34\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199333-1199366	34	NZ_CP006684	Melissococcus plutonius S1 plasmid pMEPL_178, complete sequence	14804-14837	10	0.706
NZ_CP019962_2	2.10\|1199333\|34\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199333-1199366	34	NZ_AP021886	Melissococcus plutonius strain DAT1033 plasmid pMP1, complete sequence	14804-14837	10	0.706
NZ_CP019962_2	2.10\|1199333\|34\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199333-1199366	34	NZ_AP018525	Melissococcus plutonius strain DAT585 plasmid pMP1, complete sequence	14821-14854	10	0.706
NZ_CP019962_2	2.10\|1199333\|34\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199333-1199366	34	NC_018265	Melissococcus plutonius DAT561 plasmid 1, complete sequence	184214-184247	10	0.706
NZ_CP019962_2	2.11\|1199397\|34\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199397-1199430	34	NZ_LT969519	Pseudomonas aeruginosa isolate RW109 genome assembly, plasmid: RW109 plasmid 1	539419-539452	10	0.706
NZ_CP019962_2	2.11\|1199397\|34\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199397-1199430	34	NZ_CP029357	Azospirillum sp. CFH 70021 plasmid unnamed2	354043-354076	10	0.706
NZ_CP019962_2	2.11\|1199397\|34\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199397-1199430	34	NZ_CP029730	Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed2, complete sequence	14494-14527	10	0.706
NZ_CP019962_2	2.14\|1199594\|37\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199594-1199630	37	NC_047835	Escherichia phage OSYSP, complete genome	45785-45821	10	0.73
NZ_CP019962_2	2.14\|1199594\|37\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199594-1199630	37	NC_048855	Phage NBEco002, complete genome	71380-71416	10	0.73
NZ_CP019962_2	2.14\|1199594\|37\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199594-1199630	37	AP019559	Escherichia phage SP15 DNA, complete genome	73201-73237	10	0.73
NZ_CP019962_2	2.14\|1199594\|37\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199594-1199630	37	MK373792	Escherichia phage vB_EcoS_VAH1, complete genome	67031-67067	10	0.73
NZ_CP019962_2	2.14\|1199594\|37\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199594-1199630	37	MN026741	Salmonella phage Th1, complete genome	72593-72629	10	0.73
NZ_CP019962_2	2.14\|1199594\|37\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199594-1199630	37	NC_015269	Enterobacteria phage SPC35, complete genome	71397-71433	10	0.73
NZ_CP019962_2	2.14\|1199594\|37\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199594-1199630	37	KY775453	Salmonella phage Stp1 contig.00003 genomic sequence	68910-68946	10	0.73
NZ_CP019962_2	2.14\|1199594\|37\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199594-1199630	37	MG969412	UNVERIFIED: Salmonella phage GE_vB_N5, complete genome	46002-46038	10	0.73
NZ_CP019962_2	2.14\|1199594\|37\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199594-1199630	37	MN994502	Phage NBSal003, complete genome	47784-47820	10	0.73
NZ_CP019962_2	2.14\|1199594\|37\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199594-1199630	37	NC_048010	Salmonella phage S132, complete genome	34563-34599	10	0.73
NZ_CP019962_2	2.14\|1199594\|37\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199594-1199630	37	LN887948	Escherichia phage slur09 genome assembly slu09, chromosome : 1	59758-59794	10	0.73
NZ_CP019962_2	2.14\|1199594\|37\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199594-1199630	37	MF774687	Salmonella phage SP1a clone contig.00001 genomic sequence	21822-21858	10	0.73
NZ_CP019962_2	2.14\|1199594\|37\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199594-1199630	37	MK972707	Salmonella phage SE24, complete genome	80084-80120	10	0.73
NZ_CP019962_2	2.14\|1199594\|37\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199594-1199630	37	NC_048869	Salmonella phage fuchur, complete genome	45072-45108	10	0.73
NZ_CP019962_2	2.14\|1199594\|37\|NZ_CP019962\|PILER-CR,CRISPRCasFinder,CRT	1199594-1199630	37	MN022787	Salmonella virus VSe12, complete genome	73585-73621	11	0.703
NZ_CP019962_2	2.15\|1199661\|35\|NZ_CP019962\|CRISPRCasFinder,CRT	1199661-1199695	35	NC_017543	Paenibacillus polymyxa M1 plasmid pPPM1a, complete sequence	295633-295667	11	0.686

1. spacer 1.15|858695|35|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 6, identity: 0.829

ggcttcaagggtttccagattattt---atttgaaaag	CRISPR spacer
ggcttcaagggtttccagatagttttaaatttgca---	Protospacer
******************** .***   ***** *

2. spacer 2.11|1199397|34|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017565 (Paraburkholderia sprentiae WSM5005 plasmid pl2WSM5005, complete sequence) position: , mismatch: 8, identity: 0.765

acgttatccctgatctggcggtcgagctgacgca	CRISPR spacer
agctggctactgatctggcggtcgagctggcgca	Protospacer
*  * ... ********************.****

3. spacer 2.12|1199461|37|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to MN694200 (Marine virus AFVG_250M858, complete genome) position: , mismatch: 8, identity: 0.784

aagtcaccagaagccgttaaacaggcattggacgagc--	CRISPR spacer
tggtcaccagcagccgttaaataggcatt--cctagcag	Protospacer
 .******** **********.*******   * ***

4. spacer 2.4|1198941|34|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to NC_022775 (Lactobacillus phage phiJB, complete genome) position: , mismatch: 9, identity: 0.735

ctgaaaggggaaaccgggccgcaaggcgaacgtg	CRISPR spacer
atcaaaggtgaaacggggccgcaaggcgctacag	Protospacer
 * ***** ***** *************     *

5. spacer 2.4|1198941|34|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017943 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

ctgaaaggggaaaccgggccgcaaggcgaacgtg	CRISPR spacer
ttggccgaggaacccgtgccgcaaggcgaacgat	Protospacer
.**.  *.**** *** ***************

6. spacer 2.6|1199069|36|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 9, identity: 0.75

ctatcattataatataaaagataaataaaaagacga	CRISPR spacer
ttttcattataatattaaaaataaataaaatttgaa	Protospacer
.* ************ ***.**********    .*

7. spacer 2.14|1199594|37|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to MG065692 (UNVERIFIED: Campylobacter phage C13, complete genome) position: , mismatch: 9, identity: 0.757

gcttttttatactctaaatctgcatcaagttttgtag	CRISPR spacer
aatttcttatactcgaaatctgcatcaagtaatacac	Protospacer
. ***.******** ***************  *..*

8. spacer 2.14|1199594|37|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to MK373796 (Escherichia phage vB_EcoS_HdH2, complete genome) position: , mismatch: 9, identity: 0.757

gcttttttatactctaaatctgcatcaagttttgtag	CRISPR spacer
aatttcttatactcgaaatctgcatcaagtaatacac	Protospacer
. ***.******** ***************  *..*

9. spacer 2.14|1199594|37|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to MG387042 (Salmonella phage SP3, partial genome) position: , mismatch: 9, identity: 0.757

gcttttttatactctaaatctgcatcaagttttgtag	CRISPR spacer
agtttcttatactcgaaatctgcatcaagtaatacac	Protospacer
. ***.******** ***************  *..*

10. spacer 2.14|1199594|37|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to NC_047754 (Escherichia phage APCEc03, complete genome) position: , mismatch: 9, identity: 0.757

gcttttttatactctaaatctgcatcaagttttgtag	CRISPR spacer
aatttcttatactcgaaatctgcatcaagtaatacac	Protospacer
. ***.******** ***************  *..*

11. spacer 2.4|1198941|34|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017942 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.706

ctgaaaggggaaaccgggccgcaaggcgaacgtg	CRISPR spacer
attgaagggcaaacggggccgcaaggcgggggaa	Protospacer
 * .***** **** *************.. * .

12. spacer 2.10|1199333|34|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006684 (Melissococcus plutonius S1 plasmid pMEPL_178, complete sequence) position: , mismatch: 10, identity: 0.706

atagcaaatagatagtttaaaaattcatccatag	CRISPR spacer
ttatcaaatagatactttaaaaatttttatcttc	Protospacer
 ** ********** **********. * . *

13. spacer 2.10|1199333|34|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP021886 (Melissococcus plutonius strain DAT1033 plasmid pMP1, complete sequence) position: , mismatch: 10, identity: 0.706

atagcaaatagatagtttaaaaattcatccatag	CRISPR spacer
ttatcaaatagatactttaaaaatttttatcttc	Protospacer
 ** ********** **********. * . *

14. spacer 2.10|1199333|34|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018525 (Melissococcus plutonius strain DAT585 plasmid pMP1, complete sequence) position: , mismatch: 10, identity: 0.706

atagcaaatagatagtttaaaaattcatccatag	CRISPR spacer
ttatcaaatagatactttaaaaatttttatcttc	Protospacer
 ** ********** **********. * . *

15. spacer 2.10|1199333|34|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to NC_018265 (Melissococcus plutonius DAT561 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.706

atagcaaatagatagtttaaaaattcatccatag	CRISPR spacer
ttatcaaatagatactttaaaaatttttatcttc	Protospacer
 ** ********** **********. * . *

16. spacer 2.11|1199397|34|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT969519 (Pseudomonas aeruginosa isolate RW109 genome assembly, plasmid: RW109 plasmid 1) position: , mismatch: 10, identity: 0.706

acgttatccctgatctggcggtcgagctgacgca	CRISPR spacer
aactggctgttgatctgccggtcgagctggcgca	Protospacer
*  * ... .******* ***********.****

17. spacer 2.11|1199397|34|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 10, identity: 0.706

acgttatccctgatctggcggtcgagctgacgca	CRISPR spacer
gcagcatctccgatctggcggtcgagctgggggt	Protospacer
.*. .***.*.******************. *

18. spacer 2.11|1199397|34|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029730 (Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.706

acgttatccctgatctggcggtcgagctgacgca	CRISPR spacer
aactggctgttgatctggcgatcgagctggcgca	Protospacer
*  * ... .**********.********.****

19. spacer 2.14|1199594|37|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to NC_047835 (Escherichia phage OSYSP, complete genome) position: , mismatch: 10, identity: 0.73

gcttttttatactctaaatctgcatcaagttttgtag	CRISPR spacer
aatttcttatactcgaaatctgcatcaagtagcattt	Protospacer
. ***.******** ***************  ..*

20. spacer 2.14|1199594|37|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to NC_048855 (Phage NBEco002, complete genome) position: , mismatch: 10, identity: 0.73

gcttttttatactctaaatctgcatcaagttttgtag	CRISPR spacer
agtttcttatactcgaaatctgcatcaagtagcattt	Protospacer
. ***.******** ***************  ..*

21. spacer 2.14|1199594|37|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to AP019559 (Escherichia phage SP15 DNA, complete genome) position: , mismatch: 10, identity: 0.73

gcttttttatactctaaatctgcatcaagttttgtag	CRISPR spacer
aatttcttatactcgaaatctgcatcaagtagcattt	Protospacer
. ***.******** ***************  ..*

22. spacer 2.14|1199594|37|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to MK373792 (Escherichia phage vB_EcoS_VAH1, complete genome) position: , mismatch: 10, identity: 0.73

gcttttttatactctaaatctgcatcaagttttgtag	CRISPR spacer
agtttcttatactcgaaatctgcatcaagtagcattt	Protospacer
. ***.******** ***************  ..*

23. spacer 2.14|1199594|37|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to MN026741 (Salmonella phage Th1, complete genome) position: , mismatch: 10, identity: 0.73

gcttttttatactctaaatctgcatcaagttttgtag	CRISPR spacer
agtttcttatactcgaaatctgcatcaagtaacacac	Protospacer
. ***.******** ***************  ...*

24. spacer 2.14|1199594|37|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to NC_015269 (Enterobacteria phage SPC35, complete genome) position: , mismatch: 10, identity: 0.73

gcttttttatactctaaatctgcatcaagttttgtag	CRISPR spacer
agtttcttatactcgaaatctgcatcaagtaacacac	Protospacer
. ***.******** ***************  ...*

25. spacer 2.14|1199594|37|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to KY775453 (Salmonella phage Stp1 contig.00003 genomic sequence) position: , mismatch: 10, identity: 0.73

gcttttttatactctaaatctgcatcaagttttgtag	CRISPR spacer
agtttcttatactcgaaatctgcatcaagtaacacac	Protospacer
. ***.******** ***************  ...*

26. spacer 2.14|1199594|37|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to MG969412 (UNVERIFIED: Salmonella phage GE_vB_N5, complete genome) position: , mismatch: 10, identity: 0.73

gcttttttatactctaaatctgcatcaagttttgtag	CRISPR spacer
aatttcttatactcgaaatctgcatcaagtagcattt	Protospacer
. ***.******** ***************  ..*

27. spacer 2.14|1199594|37|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to MN994502 (Phage NBSal003, complete genome) position: , mismatch: 10, identity: 0.73

gcttttttatactctaaatctgcatcaagttttgtag	CRISPR spacer
agtttcttatactcgaaatctgcatcaagtagcattt	Protospacer
. ***.******** ***************  ..*

28. spacer 2.14|1199594|37|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to NC_048010 (Salmonella phage S132, complete genome) position: , mismatch: 10, identity: 0.73

gcttttttatactctaaatctgcatcaagttttgtag	CRISPR spacer
agtttcttatactcgaaatctgcatcaagtaacacac	Protospacer
. ***.******** ***************  ...*

29. spacer 2.14|1199594|37|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to LN887948 (Escherichia phage slur09 genome assembly slu09, chromosome : 1) position: , mismatch: 10, identity: 0.73

gcttttttatactctaaatctgcatcaagttttgtag	CRISPR spacer
agtttcttatactcgaaatctgcatcaagtaacacac	Protospacer
. ***.******** ***************  ...*

30. spacer 2.14|1199594|37|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to MF774687 (Salmonella phage SP1a clone contig.00001 genomic sequence) position: , mismatch: 10, identity: 0.73

gcttttttatactctaaatctgcatcaagttttgtag	CRISPR spacer
agtttcttatactcgaaatctgcatcaagtaacacac	Protospacer
. ***.******** ***************  ...*

31. spacer 2.14|1199594|37|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to MK972707 (Salmonella phage SE24, complete genome) position: , mismatch: 10, identity: 0.73

gcttttttatactctaaatctgcatcaagttttgtag	CRISPR spacer
aacttcttatactcgaaatctgcatcaagtaatacac	Protospacer
. .**.******** ***************  *..*

32. spacer 2.14|1199594|37|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to NC_048869 (Salmonella phage fuchur, complete genome) position: , mismatch: 10, identity: 0.73

gcttttttatactctaaatctgcatcaagttttgtag	CRISPR spacer
aacttcttatactcgaaatctgcatcaagtaatacac	Protospacer
. .**.******** ***************  *..*

33. spacer 2.14|1199594|37|NZ_CP019962|PILER-CR,CRISPRCasFinder,CRT matches to MN022787 (Salmonella virus VSe12, complete genome) position: , mismatch: 11, identity: 0.703

gcttttttatactctaaatctgcatcaagttttgtag	CRISPR spacer
aatttcttatactcgaaatctgcatcaagcagcattt	Protospacer
. ***.******** **************.  ..*

34. spacer 2.15|1199661|35|NZ_CP019962|CRISPRCasFinder,CRT matches to NC_017543 (Paenibacillus polymyxa M1 plasmid pPPM1a, complete sequence) position: , mismatch: 11, identity: 0.686

ttgctttaaacattttattgtctctttttcatttc	CRISPR spacer
accgtttaaacattttattgtttctttttgtgaat	Protospacer
 .  *****************.*******     .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

56 : 8127

Propionibacterium_phage(44.44%)

capsid,portal,terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038354092.1\|56_449_-	hypothetical protein	A0A1D8ETI1	Propionibacterium_phage	2.2e-09	36.0
WP_167617707.1\|460_610_-	hypothetical protein	NA	NA	NA	NA
WP_038354093.1\|624_1503_-\|capsid	phage major capsid protein	G9FHJ8	Rhodococcus_virus	1.2e-28	31.5
WP_052237488.1\|1521_2016_-	DUF4355 domain-containing protein	A0A088F7K2	Mycobacterium_phage	6.3e-14	39.4
WP_052237489.1\|2113_2833_-	hypothetical protein	A0A1D8ETG0	Propionibacterium_phage	2.4e-14	36.5
WP_052237490.1\|2813_4241_-\|portal	phage portal protein	A0A1D8ETM3	Propionibacterium_phage	1.2e-94	42.2
WP_152025447.1\|4237_5695_-\|terminase	terminase	K4HNA2	Propionibacterium_phage	1.5e-66	34.4
WP_038354094.1\|5666_6044_-	hypothetical protein	NA	NA	NA	NA
WP_038354095.1\|6188_6488_-	HNH endonuclease	V5R8P9	Arthrobacter_phage	1.9e-21	53.5
WP_038354096.1\|6561_7215_-	site-specific DNA-methyltransferase	A0A1P8CMS8	Staphylococcus_phage	8.3e-38	39.7
WP_038354097.1\|7318_7729_-	hypothetical protein	NA	NA	NA	NA
WP_038354098.1\|7899_8127_-	hypothetical protein	A0A090D7Z7	Clostridium_phage	1.2e-12	42.2

DBSCAN-SWA_2

1077309 : 1137590

Clostridium_phage(57.14%)

transposase,protease,terminase,tRNA,integrase

attL 1104888:1104903|attR 1139025:1139040

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038351843.1\|1077309_1078176_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_038351842.1\|1078191_1081560_-	S8 family serine peptidase	NA	NA	NA	NA
WP_038351841.1\|1081801_1083121_+	ATP-binding protein	NA	NA	NA	NA
WP_038351840.1\|1083267_1086330_-\|protease	M6 family metalloprotease domain-containing protein	NA	NA	NA	NA
WP_038351839.1\|1086583_1087327_+	hypothetical protein	NA	NA	NA	NA
WP_038351838.1\|1087415_1087922_+	DUF2589 domain-containing protein	NA	NA	NA	NA
WP_038351837.1\|1087940_1088612_+	DUF2589 domain-containing protein	NA	NA	NA	NA
WP_038351836.1\|1088618_1088879_+	hypothetical protein	NA	NA	NA	NA
WP_038351835.1\|1088901_1089621_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_081571101.1\|1090456_1091536_+\|integrase	site-specific integrase	A0A090EUH1	Clostridium_phage	1.2e-17	26.0
WP_038351833.1\|1092014_1096394_+	leucine-rich repeat protein	NA	NA	NA	NA
WP_038351832.1\|1096495_1097059_+	hypothetical protein	NA	NA	NA	NA
WP_152025449.1\|1097184_1097745_+	hypothetical protein	NA	NA	NA	NA
WP_038351830.1\|1097888_1098326_+	hypothetical protein	NA	NA	NA	NA
WP_038351829.1\|1098322_1098934_+	hypothetical protein	NA	NA	NA	NA
WP_038351828.1\|1098938_1099139_+	hypothetical protein	NA	NA	NA	NA
WP_038351827.1\|1099149_1099725_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_038351826.1\|1099930_1100164_+	hypothetical protein	NA	NA	NA	NA
WP_038351825.1\|1100178_1100406_+	DUF2922 domain-containing protein	NA	NA	NA	NA
WP_081571349.1\|1100525_1101017_+	peptidase M15	A0A1X9Q0V8	Human_gokushovirus	4.2e-10	45.2
WP_038351824.1\|1101443_1101743_-	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_038351823.1\|1101898_1103755_+	hypothetical protein	NA	NA	NA	NA
WP_038351822.1\|1103852_1105160_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
1104888:1104903	attL	NA	NA	NA	NA
WP_052237174.1\|1105270_1105744_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_038351821.1\|1105908_1106100_+	transcriptional regulator	Q8SBM7	Clostridium_phage	7.6e-08	44.4
WP_038351820.1\|1106099_1107173_+\|integrase	site-specific integrase	Q8SBN2	Clostridium_phage	2.9e-88	45.3
WP_038351819.1\|1107174_1107495_+	hypothetical protein	NA	NA	NA	NA
WP_038351818.1\|1107495_1108617_+	AAA family ATPase	NA	NA	NA	NA
WP_013381100.1\|1108967_1109309_+	hypothetical protein	NA	NA	NA	NA
WP_081571104.1\|1109256_1110621_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_038352117.1\|1111325_1111985_+	corrinoid protein	NA	NA	NA	NA
WP_110060315.1\|1113765_1116489_+	DUF4445 domain-containing protein	NA	NA	NA	NA
WP_038352114.1\|1116504_1117353_+\|tRNA	pyrrolysine--tRNA(Pyl) ligase large subunit	NA	NA	NA	NA
WP_038352113.1\|1117360_1118413_+	methylornithine synthase PylB	NA	NA	NA	NA
WP_038352112.1\|1118412_1119552_+	3-methylornithine--L-lysine ligase PylC	NA	NA	NA	NA
WP_038352111.1\|1119548_1120334_+	3-methylornithyl-N6-L-lysine dehydrogenase PylD	NA	NA	NA	NA
WP_052237210.1\|1120345_1120705_+	hypothetical protein	NA	NA	NA	NA
WP_038352110.1\|1120860_1122213_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA
WP_038352109.1\|1122213_1123131_+	GTP-binding protein	NA	NA	NA	NA
WP_038352108.1\|1123153_1124407_+	ammonium transporter	NA	NA	NA	NA
WP_038352107.1\|1124772_1125111_+	P-II family nitrogen regulator	NA	NA	NA	NA
WP_052237209.1\|1126391_1126766_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_038352106.1\|1126948_1127161_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_038352105.1\|1127174_1127381_+	hypothetical protein	NA	NA	NA	NA
WP_038352104.1\|1127455_1127740_+	hypothetical protein	NA	NA	NA	NA
WP_038352103.1\|1127718_1127925_-	hypothetical protein	NA	NA	NA	NA
WP_038352102.1\|1128085_1128301_+	hypothetical protein	NA	NA	NA	NA
WP_038352101.1\|1128403_1130416_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0N7ACC7	Bacillus_phage	1.9e-104	36.9
WP_081571351.1\|1130457_1131369_+	AAA family ATPase	A0A0N7ACA6	Bacillus_phage	1.4e-35	35.3
WP_038352099.1\|1131478_1131733_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_038352098.1\|1131734_1132385_+	hypothetical protein	NA	NA	NA	NA
WP_038352097.1\|1132501_1132792_+	hypothetical protein	NA	NA	NA	NA
WP_038352096.1\|1132788_1133127_+	hypothetical protein	NA	NA	NA	NA
WP_038352095.1\|1133149_1133662_+	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_110060319.1\|1133669_1133975_+	DNA-binding protein	NA	NA	NA	NA
WP_038352093.1\|1134078_1134426_+	hypothetical protein	NA	NA	NA	NA
WP_038352092.1\|1134418_1134745_+	hypothetical protein	NA	NA	NA	NA
WP_038352091.1\|1134749_1135298_+	DUF3486 family protein	NA	NA	NA	NA
WP_038352090.1\|1135294_1135786_+	hypothetical protein	NA	NA	NA	NA
WP_110060318.1\|1136159_1137590_+\|terminase	phage terminase large subunit	A0A090EUA8	Clostridium_phage	1.2e-195	73.5
1139025:1139040	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1651763 : 1659100

Bacillus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038353010.1\|1651763_1652201_+	rhodanese-like domain-containing protein	A0A0P0BYG5	Ostreococcus_lucimarinus_virus	1.5e-06	34.1
WP_038353009.1\|1652206_1652623_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_038353008.1\|1652644_1654009_+	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.5e-105	45.9
WP_038353007.1\|1654046_1654364_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	6.0e-18	44.9
WP_038353006.1\|1654547_1654898_+	Hpt domain-containing protein	NA	NA	NA	NA
WP_038353005.1\|1654961_1655417_-	peptide deformylase	E3SLL2	Synechococcus_phage	1.5e-14	39.2
WP_038353004.1\|1655547_1656405_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_038353003.1\|1656609_1657290_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.0e-26	33.0
WP_052237337.1\|1657261_1658329_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	6.3e-27	27.5
WP_038353002.1\|1658428_1659100_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-34	38.0

DBSCAN-SWA_4

2389516 : 2410144

Propionibacterium_phage(29.41%)

capsid,portal,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038354098.1\|2389516_2389744_+	hypothetical protein	A0A090D7Z7	Clostridium_phage	1.2e-12	42.2
WP_038354097.1\|2389914_2390325_+	hypothetical protein	NA	NA	NA	NA
WP_038354096.1\|2390428_2391082_+	site-specific DNA-methyltransferase	A0A1P8CMS8	Staphylococcus_phage	8.3e-38	39.7
WP_038354095.1\|2391155_2391455_+	HNH endonuclease	V5R8P9	Arthrobacter_phage	1.9e-21	53.5
WP_038354094.1\|2391599_2391977_+	hypothetical protein	NA	NA	NA	NA
WP_081571194.1\|2392117_2392654_+	hypothetical protein	A0A0S1S2I3	Propionibacterium_phage	4.3e-08	30.1
WP_081571195.1\|2392619_2392907_+	hypothetical protein	NA	NA	NA	NA
WP_152025450.1\|2393184_2393730_+	hypothetical protein	NA	NA	NA	NA
WP_081571197.1\|2393746_2394418_+\|portal	phage portal protein	A0A1D8ETN4	Propionibacterium_phage	1.4e-27	42.9
WP_167617875.1\|2394345_2395146_+\|portal	phage portal protein	A0A1D8ETN4	Propionibacterium_phage	1.6e-27	45.8
WP_152025451.1\|2395233_2395533_+	hypothetical protein	A0A1D8ETG0	Propionibacterium_phage	3.2e-13	47.4
WP_052237488.1\|2395630_2396125_+	DUF4355 domain-containing protein	A0A088F7K2	Mycobacterium_phage	6.3e-14	39.4
WP_038354093.1\|2396143_2397022_+\|capsid	phage major capsid protein	G9FHJ8	Rhodococcus_virus	1.2e-28	31.5
WP_167617707.1\|2397036_2397186_+	hypothetical protein	NA	NA	NA	NA
WP_038354092.1\|2397197_2397590_+	hypothetical protein	A0A1D8ETI1	Propionibacterium_phage	2.2e-09	36.0
WP_038354091.1\|2397586_2397928_+	hypothetical protein	NA	NA	NA	NA
WP_038354090.1\|2397920_2398181_+	hypothetical protein	NA	NA	NA	NA
WP_052237487.1\|2398177_2398516_+	hypothetical protein	NA	NA	NA	NA
WP_038354089.1\|2398529_2399087_+	hypothetical protein	A0A0B5A550	Streptococcus_phage	2.4e-38	49.2
WP_038354088.1\|2399095_2399374_+	hypothetical protein	NA	NA	NA	NA
WP_167617877.1\|2399502_2399769_+	DUF5361 domain-containing protein	NA	NA	NA	NA
WP_052237486.1\|2399758_2401894_+	tape measure protein	A0A1P8VVL4	Streptococcus_phage	6.5e-39	32.1
WP_038354086.1\|2401886_2403365_+	hypothetical protein	Q9AZL3	Lactococcus_phage	5.1e-59	34.2
WP_052237485.1\|2403368_2407640_+	hypothetical protein	M1IFB6	Streptococcus_phage	4.2e-106	40.9
WP_038352278.1\|2407898_2408159_+	hypothetical protein	NA	NA	NA	NA
WP_038352277.1\|2408158_2408500_+	hypothetical protein	NA	NA	NA	NA
WP_052237235.1\|2408531_2408858_+	hypothetical protein	A0A0P0IZF9	Lactobacillus_phage	6.9e-09	33.7
WP_052237234.1\|2408847_2409129_+\|holin	phage holin	A0A1J0MFI9	Staphylococcus_phage	4.5e-09	47.1
WP_052237233.1\|2409130_2410144_+	hypothetical protein	F0PIJ7	Enterococcus_phage	8.9e-47	48.8

DBSCAN-SWA_5

2897288 : 2907097

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038350728.1\|2897288_2901002_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	2.1e-29	25.0
WP_013379507.1\|2901020_2901515_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.1e-29	47.7
WP_013379508.1\|2901549_2902257_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3HI61	Synechococcus_phage	1.6e-47	43.5
WP_038350727.1\|2902404_2903793_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.8e-58	34.5
WP_013379511.1\|2903806_2904835_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FC27	Synechococcus_phage	7.3e-73	44.7
WP_038350726.1\|2905564_2907097_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	7.4e-69	46.4

DBSCAN-SWA_6

3368195 : 3375601

Catovirus(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052237451.1\|3368195_3369200_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	1.1e-12	35.8
WP_052237450.1\|3369253_3370084_+	glycosyltransferase	A0A1V0SAH6	Catovirus	7.4e-07	38.1
WP_038353843.1\|3370080_3371514_+	mannose-1-phosphate guanylyltransferase	A0A1V0SH58	Hokovirus	5.5e-50	29.8
WP_038353842.1\|3371517_3372570_+	GDP-mannose 4,6-dehydratase	A0A0E3I398	Synechococcus_phage	1.3e-120	63.9
WP_038353841.1\|3372572_3373745_+	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A218MN59	uncultured_virus	1.9e-48	33.1
WP_038353840.1\|3373737_3374664_+	GDP-L-fucose synthase	M1HWW2	Paramecium_bursaria_Chlorella_virus	2.3e-94	54.1
WP_038353839.1\|3374656_3375601_+	GDP-L-fucose synthase	M1I463	Paramecium_bursaria_Chlorella_virus	7.0e-78	45.8

DBSCAN-SWA_7

4410100 : 4421956

Streptococcus_phage(62.5%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052237509.1\|4410100_4411093_-	hypothetical protein	A0A2R3ZZV6	Microbacterium_phage	6.5e-10	41.6
WP_167617968.1\|4411092_4411353_-\|holin	phage holin	NA	NA	NA	NA
WP_038354252.1\|4411366_4411630_-	hypothetical protein	NA	NA	NA	NA
WP_038354251.1\|4411673_4412084_-	hypothetical protein	NA	NA	NA	NA
WP_038354250.1\|4412087_4412423_-	hypothetical protein	NA	NA	NA	NA
WP_038354249.1\|4412422_4412683_-	hypothetical protein	NA	NA	NA	NA
WP_038354248.1\|4412684_4412930_-	hypothetical protein	NA	NA	NA	NA
WP_052237485.1\|4412944_4417216_-	hypothetical protein	M1IFB6	Streptococcus_phage	4.2e-106	40.9
WP_167617970.1\|4417219_4417399_-	hypothetical protein	L0P522	Streptococcus_phage	1.2e-07	39.0
WP_152025457.1\|4417391_4417937_-	hypothetical protein	Q9AZL3	Lactococcus_phage	1.8e-22	40.3
WP_081571334.1\|4417988_4418234_-	hypothetical protein	A0A1S5SEJ1	Streptococcus_phage	1.0e-09	52.6
WP_081571335.1\|4418280_4418583_-	hypothetical protein	NA	NA	NA	NA
WP_081571336.1\|4418682_4419018_-	hypothetical protein	NA	NA	NA	NA
WP_081571337.1\|4419306_4419672_-	hypothetical protein	NA	NA	NA	NA
WP_167617972.1\|4419955_4420327_-	tape measure protein	C0LZY8	Enterococcus_phage	5.1e-16	44.0
WP_167617974.1\|4420343_4420535_-	hypothetical protein	A0A1P8VVL4	Streptococcus_phage	1.6e-05	42.6
WP_167617976.1\|4420795_4420972_-	DUF5361 domain-containing protein	NA	NA	NA	NA
WP_038354089.1\|4421398_4421956_-	hypothetical protein	A0A0B5A550	Streptococcus_phage	2.4e-38	49.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019962

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection