CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP008915	Burkholderia thailandensis strain 2003015869 chromosome 2, complete sequence	1 crisprs	csa3,cas3,DinG	0	0	5	0
NZ_CP008914	Burkholderia thailandensis strain 2003015869 chromosome 1, complete sequence	1 crisprs	WYL,PD-DExK,DEDDh,DinG,csa3	0	0	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP008915_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008915_1

1288282-1288373

Orphan

Consensus_repeat	Method
GCGACGCGCGCAAGGCCGAAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008915_1

>merge|NZ_CP008915|1|1288282-1288373|CRISPRCasFinder
GCGACGCGCGCAAGGCCGAAGCGGGCGCGAAGCGCACGGCCGACGACGACAGGCACCGCAAGCACGACGGCGACGCGCGCAAGGCGGAAGCG

>NZ_CP008915|1|1|1288282-1288373|CRISPRCasFinder
GCGACGCGCGCAAGGCCGAAGCG	GGCGCGAAGCGCACGGCCGACGACGACAGGCACCGCAAGCACGACG
GCGACGCGCGCAAGGCGGAAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008915.2\|WP_009899924.1\|1292096_1292822_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP008915.2\|WP_009899920.1\|1294230_1295121_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|226145
NZ_CP008915.2\|WP_009899936.1\|1283995_1284637_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008915.2\|WP_009899922.1\|1292871_1294179_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP008915.2\|WP_009899933.1\|1285728_1286745_-\|1-aminocyclopropane-1-carboxylate-deaminase	unknown	unknown	gnl\|CDD\|183494
NZ_CP008915.2\|WP_009899917.1\|1296815_1298441_+\|cytochrome-c-methylamine-utilization-protein	unknown	unknown	gnl\|CDD\|224771
NZ_CP008915.2\|WP_127446982.1\|1282014_1282311_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008915.2\|WP_029227226.1\|1280265_1281474_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP008915.2\|WP_025405556.1\|1295340_1296819_+\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|277318
NZ_CP008915.2\|WP_009899941.1\|1277978_1280009_+\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|376718
NZ_CP008915.2\|WP_011401139.1\|1300383_1300596_+\|DUF3079-domain-containing-protein	unknown	unknown	gnl\|CDD\|337966
NZ_CP008915.2\|WP_009899916.1\|1298603_1299464_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|377216
NZ_CP008915.2\|WP_025987468.1\|1282426_1283818_+\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|293737
NZ_CP008915.2\|WP_009896602.1\|1281648_1281990_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008915.2\|WP_019255458.1\|1290633_1291896_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP008915.2\|WP_009899935.1\|1284721_1285075_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008915.2\|WP_009899928.1\|1289675_1290296_-\|HAD-hydrolase-like-protein	unknown	unknown	gnl\|CDD\|319799
NZ_CP008915.2\|WP_009899942.1\|1276694_1277639_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP008915.2\|WP_009899914.1\|1299795_1300068_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008915.2\|WP_009896595.1\|1286937_1287447_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009

Protein	Function_ID	Function_description	E-value
NZ_CP008915.2\|WP_009899924.1\|1292096_1292822_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	3.20406e-58
NZ_CP008915.2\|WP_009899920.1\|1294230_1295121_+\|amidohydrolase-family-protein	gnl\|CDD\|226145	COG3618, COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	3.73384e-69
NZ_CP008915.2\|WP_025405556.1\|1295340_1296819_+\|serine/threonine-protein-phosphatase	gnl\|CDD\|277318	cd00839, MPP_PAPs, purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	6.97841e-09
NZ_CP008915.2\|WP_009899928.1\|1289675_1290296_-\|HAD-hydrolase-like-protein	gnl\|CDD\|319799	cd04303, HAD_PGPase, phosphoglycolate phosphatase, similar to Synechococcus elongates phosphoglycolate phosphatase PGP/CbbZ. Phosphoglycolate phosphatase catalyzes the dephosphorylation of phosphoglycolate; its activity requires divalent cations, especially Mg++. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.54494e-68
NZ_CP008915.2\|WP_009899933.1\|1285728_1286745_-\|1-aminocyclopropane-1-carboxylate-deaminase	gnl\|CDD\|183494	PRK12390, PRK12390, 1-aminocyclopropane-1-carboxylate deaminase; Provisional.	0
NZ_CP008915.2\|WP_009899917.1\|1296815_1298441_+\|cytochrome-c-methylamine-utilization-protein	gnl\|CDD\|224771	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism].	3.57407e-82
NZ_CP008915.2\|WP_011401139.1\|1300383_1300596_+\|DUF3079-domain-containing-protein	gnl\|CDD\|337966	pfam11278, DUF3079, Protein of unknown function (DUF3079). This family of proteins with unknown function appears to be restricted to Proteobacteria.	1.88329e-34
NZ_CP008915.2\|WP_029227226.1\|1280265_1281474_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	4.21559e-55
NZ_CP008915.2\|WP_009899941.1\|1277978_1280009_+\|BCCT-family-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	0
NZ_CP008915.2\|WP_009899916.1\|1298603_1299464_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|377216	pfam04072, LCM, Leucine carboxyl methyltransferase. Family of leucine carboxyl methyltransferases EC:2.1.1.-. This family may need divides a the full alignment contains a significantly shorter mouse sequence.	4.17989e-52
NZ_CP008915.2\|WP_025987468.1\|1282426_1283818_+\|alkaline-phosphatase-family-protein	gnl\|CDD\|293737	cd16013, AcpA, acid phosphatase A. Acid phosphatase A catalyzes the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at low pH. AcpA hydrolyzes a variety of substrates, including p-nitrophenylphosphate (pNPP), p-nitrophenylphosphorylcholine (pNPPC), peptides containing phosphotyrosine, inositol phosphates, AMP, ATP, fructose 1,6-bisphosphate, glucose and fructose 6-phosphates, NADP, and ribose 5-phosphate. AcpA is distinct from histidine ACPs and purple ACPs, as well as class A, B, and C bacterial nonspecific ACPs.	5.01657e-100
NZ_CP008915.2\|WP_019255458.1\|1290633_1291896_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.64768e-73
NZ_CP008915.2\|WP_009899922.1\|1292871_1294179_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.46405e-132
NZ_CP008915.2\|WP_009899942.1\|1276694_1277639_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	2.72797e-56
NZ_CP008915.2\|WP_009896595.1\|1286937_1287447_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	6.18054e-47

>NZ_CP008915.2|WP_009896595.1|1286937_1287447_+|winged-helix-turn-helix-transcriptional-regulator
MCATKKSAPKAAAQPAGADIDRVDRAILRMLQRDASISNVALAAKVNLSAPACLRRVERLKEMGLIRGIVALLEPKALNAGMLVMIGVVLDRSTPDSFGAFEQAAQKVSGCMECHVVTGEFDYIMLIRTRDSDTFNRLHAEQLLYLPGVRQIRTFVVLKEILSTTSFPI
>NZ_CP008915.2|WP_009899933.1|1285728_1286745_-|1-aminocyclopropane-1-carboxylate-deaminase
MNLQKFPRYPLTFGPTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLVPDGFDIGFRKSWEDALADVRARGGKPYAIPAGCSDHPLGGLGFVGFAEEVRVQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGIDASAKPAQTREQILRIARNTADRVELGRDIASGDVVLDERFGGPEYGLPNEGTLEAIRLCAKLEGVLTDPVYEGKSMHGMIEKVRLGEFPAGSKVLYAHLGGVPALNAYSFLFRDG
>NZ_CP008915.2|WP_009899935.1|1284721_1285075_-|hypothetical-protein
MGFVGGERRRARIAESNEIDGAMLITEVASEPLAALGGARSEATPPLTLYGAYRQGFADYLAGRPNPYRIGSRLAGVWHEGHAEAASNDALDFTARARTCGGARTAANPVAFFRRRR
>NZ_CP008915.2|WP_009899936.1|1283995_1284637_+|hypothetical-protein
MKIRSGLVAELTVNLLLPWAAYRAAVPHWGETGGLIASAVPPLAWSVIELARFRRIDALSAVVLFGIVLSIAAALAGGSPRMLLMRESLASGAIGVAFLGSLALRKPLVFHLARATIAREAHDGAARIDALWAERPAFVSAMRLMTLVWGSGLVAENLLRAWMVWNWPVERVLVVAPFVGYGIYGALMLWTLWYRKVMRAHALAGLPRGGALG
>NZ_CP008915.2|WP_025987468.1|1282426_1283818_+|alkaline-phosphatase-family-protein
MAKILENVEHIVVVMFENRSFDTMLGWLYPPGTQPAHVLPARGSPQFDGLKPDMSNPSRAGKTIAVTREATNNVIPDPQETFVNVTSQILGPGGAGNPWPPMQGFVVNYETTQTTDPGHVMQCHSVAQLPTLTALARAYAVSDAWFASVPSQTWPNRAFAHAGTSNGHVNNGAIPDPLEWDVPTIFDVLSSIGASWAVYSDTAVTPSLTHTMFPSLWNDKYADNFKRFPDFVAACKNDALPRYAFVEPSFLFEPNDQHPPHDVLAGDKFLHDIWTAISTSPGWPRTLLVVTYDEHGGCFDHVLPPANATPPDAASNPGDETFEFDRFGVRVPAVVVSPYIEAGTVFRSPTNVPYDHTSILATLRDWLAIAPDKMLKSARIANAPTLAQLFTRSVPRGDLPAIAAPSADFVQPPPSAPLNDLQKSLVTGTSRRDGNDPAASVAPIATRQHALDFFTRRATAKPT
>NZ_CP008915.2|WP_127446982.1|1282014_1282311_+|hypothetical-protein
MTTEPAHASGGARSFTHRADRAAIRRHDGRRHRQRHLRHQRGYRRNESVFMGRGANSAPGDKFAAMIETAPARAPPPARRVAGTPAAPPCFSRNIGYT
>NZ_CP008915.2|WP_009896602.1|1281648_1281990_+|hypothetical-protein
MIAPATPAALAAGATTFAEWAALGTLALLYLFGLGWSLRGALARSRGRAYWLACAALIAGGTACALLAKPSAPNSGEMPPGFGLGVLVVMLGIAGTTAGCAWQAIARLRHGQR
>NZ_CP008915.2|WP_029227226.1|1280265_1281474_-|serine-hydrolase
MNPESVTPATAAAAATAAAAATDHAALAGRLDRVFATALAERRVVGAVALVARGGELVYRRAHGFAERETQRPMREDTLFRLSSITKPIVTVAVLRLVAAGRMALDAPITRWLPEFAPALPDGRAPALTVHQLLTHTAGLSYWLLEAPGSAYHTLGISDGIDLVDFDLAENLRRIAAAPLAFEPGSAWRYSLALDVLGAAIERETGLALPDAVAQLVTTPLGLRDTGFVAADPARFAAAYANAAPQPVRITDNLDVPLPEGHGVAVRFAPSRVFDATAFASGGAGMYGSADDVLRVLETIRTGGDGFLPAALAAAMRTDHTGPAAETRGPGWGFGYGGAVLSDPARAQSPQSAGTLQWGGVYGHSWFVDAARGLTVLLMTNTAYEGMSGPLTVEVRDAVYAV
>NZ_CP008915.2|WP_009899941.1|1277978_1280009_+|BCCT-family-transporter
MPSSRSAPRTTLKPQVVVPSLAVIGALLAVCALLPNEAGALFGTGQQWIVERFDWFYVLAITTFLIFIVLIAASRFGNIKLGPDDAEPEFSFVSWTAMLFAAGMGIGLMYFGVGEPIQHYLKPPTALGGTPAAAREAMLMSFFHWGLHAWATYGVMGLVLAYFGFRYNLPLTLRSGLYPVLREGVNGWIGHTVDAFALVGTVAGIAVTLGYGVLQLSAGLHTIAGWQTDSDAFRIGLVAVVVALAGLSAASGLDKGVRRLSELNLMLAFALLAFVVVAGPTSFLLRAFGDNVGEYLSKLVSLSFRTYAYEAPNDKGWFGGWTLLYWAWWVSWSPFVGMFIARISRGRTIREFVIGVLLVPTAFNLVWMTAFGNSAIWLDTHAAAGALAQTATNVDALLFRFFDYLPLTQLLSVAAIVLIAVFFVTSADSGAFVIDAIATRGAPHSPVWQRLFWAAVLGVTASVLLVAGGLKALQALTLVAALPVALVMLALCYGLWRGLKADHAHYSQEMAPATSFWTGQHWRQRLSQILRHTTGADARRFIAQTVEPALRKVADELKAGGVDAHVARDDDDAVRLTVPAPAQRDFVYGARVSRKSAPAFRIREAAEPEPQREHVCEVLTFFADGRLGYDIEYLRGDEIIADVLRQYERYVSLAADTRTHLLNRAPEHAGPDGLTQ
>NZ_CP008915.2|WP_009899942.1|1276694_1277639_-|MurR/RpiR-family-transcriptional-regulator
MSDSPDSPPDAEPSIAARIAAALPSLTPIHRRMGEYVLANPFRAATMRIDELANAVDASIATANRFARALGFDGYPALRAALVRGFEATLAPVERLRSAQEHEAGARGGELIDASFEQALANLERTRARLDRANVEAAVDSLLAARRIFIVGMGASAFLAGLMEHGLSVYRDNVQSLALLGGPTDAARRLFSARGDDLVVAIAFPRYVHDTIELTRRAAERGAPVLAITDGPDSPVAPFAARALFVHAERRLAATSEAAVLALVEALIDAVAHRSQRSARAAAEVTEFMLPWLEARGACAAPPHPPRRSRKTDR
>NZ_CP008915.2|WP_009899928.1|1289675_1290296_-|HAD-hydrolase-like-protein
MAYKLIAFDFDGTLADSLACFLLALSESARQHGFRAIDGALLPQVRGMSAHEIVKLLGVPPWKVPLIAADVRRRMHARASDVRLFAGIDATLRALAQRGTRVAIATSNSEAVVRAIAGPATCAHIRHFSCGISLFGKARRLRALAHASGFACADVLYVGDEVRDAQAADRAGIAFRGVAWGYTAPDALRAHCRMPLIERPEELLAL
>NZ_CP008915.2|WP_019255458.1|1290633_1291896_-|MFS-transporter
MTKIARRLMPLLVIMFLIAFIDRQNVGFAKLQMVHALGMTETSYGLGASLFFIGYLLFEVPSTLALHRFGARLWLARIMMTWGVITVLLGFTHSTSVFYVFRFLLGVAEAGFYPGVIYYLTLWFPQSHRTRVLGLFTLGSALANMLGSLAGGLLLSLDGRLGLAGWQWVFVATGLPAVAVAFVALRYLPESVERATFLADDEKRVVLAALKREASPEAVSESPWRALVDPRVLMFALAYMLMSTSLYGVTYWLPTLLKSSGVPASLNGLLNMIPWAIAALLLLWLPARLKRERLVLKAMAIVAGVGVAGFALSLALPGLPLRFAALVLGGACIPLLYPCFWSLPPRFFSGARAAASIAAINSIGNLGGFFAQNLMPYVGKAAGSTSAPMLVPVVCLAALGVGMLAAASVAGRRRAAGMAA
>NZ_CP008915.2|WP_009899924.1|1292096_1292822_+|GntR-family-transcriptional-regulator
MHATDDRLPRYQRLRDELAALIAARHWRPGEAIPTEQALAKRYDVAIGTVRKAVDLLVADGMLERFQGRGTFVRRASFDSSLFRFFRFQSKHGERRIPESRILRREVVEATSAVAAALQIPARAPVIEMTRVRLIDGAPMLAEEIWLPYDRFAAFSRLELDSIGDLLYPVYEAHCNQIVASATETLTVEAIGPVHARLLRIEPGTPAVVIERLAYGYDRRPLEWRRSRGPASEFIYQAEIR
>NZ_CP008915.2|WP_009899922.1|1292871_1294179_+|MFS-transporter
MFEWFATVSLRERRTFWACFGGWALDALDMQMFSLVIPAIVAEWSLSRTQAGFVGGATLVASAIGGWVAGMLSDRFGRVRTLQWTIACFAVGTFACAFATSYPQFVVLKALQGAGFGGEWAAGAVLMAETIRAEHRGKAMGAVQSAWALGWAAAVLLYALAFSLMPAALAWRAMFAIGLLPALLIVYVRRGIVEPSVSPSSPSNTPAAARASVPLVGIFSRDTRRMTLIGALLGVGAHGGYYALMTWLPTYLKVERHLSVLGTGGYLAVIIVAFFCGCIASAQLLDRIGRHGTILAFAACCIATVIAYLFLPLGNAAMLVLGFPLGFFAAGIPASMGALFNELYPRGTRGTGVGFCYNFGRVASAGFPVLVGHMSADMPLGTAIGIDAAIAYSIVVVAVLLLPETRARALDDLAGAHATADARADRIGAPDARHR
>NZ_CP008915.2|WP_009899920.1|1294230_1295121_+|amidohydrolase-family-protein
MSEQEWSTCAHAAEMRCAAGGITAIDAHAHVFETGLPLAGRRRYAPDYDAPLDAYLAQLDAHRVSHGVLVQPSFLGSDCRYLLRALAQQPRRLRGVAVIDAGCEPQVLDTLDRAGVVGIRLNLIGMPDPALDGPAWRATLERIAALRWHVELHAQAQRLGRLIAPLLAHRVNVVVDHFGRPNPACGIADAGFRDLLRTAATRRVWVKVSGVYRNWPLAPGEANARAQEAFDALAAEFGAERLVWGSDWPHTQFERTETFGRAFTLARQWMRDDAMRRAIFVETPARLFRFGEIHGA
>NZ_CP008915.2|WP_025405556.1|1295340_1296819_+|serine/threonine-protein-phosphatase
MPRPILRRAAALLPTLASAALLQACTSSIDNQPDAASASANIQAAWVEIGDANQAIARVITSYAPPAAAPGEAAPAVCPQLNADGKIARMTLRAAAGTAAQRPTASDPADSKPSGFPVSVCEATVPANAKDVTVAGRALPLPKAEPQRVAIIADTGCRMKKADNAFQACSDATVWPFATIAASVAKLNPDLVLHVGDYHYRENACPPDIAGCKNSPWGYGWDAWRADLFEPAAPLLAKAPWVVVRGNHEECARAGQGWFRFLDPRPYSDARSCNDPANDGNANYSEPYAVPLGTGSQVIVFDTAKVGRAALKTTDVQFQIYQKQFQTVAALANKPGMSTTIFTNHHPILAFAPIPGSTPAPGNLALQSVMSSLYAQAYYPPGVQVALHGHVHDFQAINFASGHPATIVSGNGGDNLDVALPDPFPANLTPAPGVVIDKLSHNNSFGFLIMERRAAPARGWTFKAYTAAGKLLASCDQAGTTLTCDKTGFVAP
>NZ_CP008915.2|WP_009899917.1|1296815_1298441_+|cytochrome-c-methylamine-utilization-protein
MTGRRRSSAARRAVPAAALAVRASVTAFALGTARTRRAVLTLSTIARAACGALAACASAIALASGPAAPAATHSTHSTHAARPASAASSTSPMNPTSTPGASGPAHAKAALDAARAKAAPPSSPTTVLLPGAPPERVVDTIGRGTPQVASKVDPTAAVFRPDPTLAALGKRVFFDPALSEPRGTSCASCHDPGRAFAPTLSPAALAGPRVPQGSRPGHFSRRNAPSLLYVRYVPRRHFYQDDDALAPAPFGGLFSDGRADTLAEQLRGPLFDPDEMNNASAAALMRKIGRTGLGAALAGRFGPSVRRDPERMVRALGEAMQAYLQSDEMAPFSSRYDAYVTKRAPLTPQEMRGLALFRNPDKGNCMSCHTLSDTASRPERSLFTDFGYDAIAVPRNRALPANRDPRHFDNGLCDTAAKLRWPEPTQWCAYLRTPGLRNVAIKESFMHNGVFDTLRDAVAFYNTRSTDPARWYHGRDTFDDVPRAYRGNVNVNSTPMNRRPGTPPAMTDADVDDLVAFLRTLTDARYVGLMPAAPDGKAARP
>NZ_CP008915.2|WP_009899916.1|1298603_1299464_+|class-I-SAM-dependent-methyltransferase
MSNQSIAAPDSTAVRVALWRALHVEIDAPPHVLDDGIGLELAAPDDDWRSRPDMAPQATRGYRASIVGRARFVEDLIGEQAERGVAQYVVLGAGLDTFAQRRAKLAAHLRVFEIDQPGTQAWKRQRLIALGYGVPEWLRLVPVDFEASDAWRAQLSAAGFDDSRPAVVSSTGVSMYLTRDAIAGTLRQIATLAPGSTLAMTFLLPLELIDDPAERAQHAAVYERARAAGTPFVSFFSPAEMLALAREAGFREVRHVSTDDLVRRYFEGRPDGLRPSSGEAFLVAST
>NZ_CP008915.2|WP_009899914.1|1299795_1300068_+|hypothetical-protein
MEHLVRIVNDTDRQILAWLRNQVGDERVERAAQHMGRVRKPYLSAICRYLGVWPPISLRYQTRRAEVDHAVGDRYLTLIRQHLATHAASR
>NZ_CP008915.2|WP_011401139.1|1300383_1300596_+|DUF3079-domain-containing-protein
MAKKFPLHPKHPERNCWGCDRYCSVDALSCGNGSDRTQHPVELLGDDWYEWEQENEAAQKQMQQTQAAAR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

380033 : 421486

Burkholderia_virus(43.24%)

integrase,tail,transposase,tRNA,plate

attL 392104:392123|attR 425713:425732

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009895739.1\|380033_381074_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.7e-93	54.0
WP_009899222.1\|381204_382428_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_009895742.1\|382507_382720_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_019254422.1\|382886_383333_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	3.3e-22	48.6
WP_009899227.1\|383429_385307_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.9e-67	36.2
WP_009895748.1\|385353_385692_-	hypothetical protein	NA	NA	NA	NA
WP_009899229.1\|385750_387793_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	4.2e-35	32.0
WP_144410555.1\|388132_388348_-	hypothetical protein	NA	NA	NA	NA
WP_009899231.1\|388441_388732_-	hypothetical protein	NA	NA	NA	NA
WP_127446954.1\|388712_389111_+	hypothetical protein	NA	NA	NA	NA
WP_009899232.1\|389202_389703_-	hypothetical protein	A0A2H4N7D9	Pectobacterium_phage	2.0e-31	54.3
WP_009899233.1\|390036_390393_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	1.1e-44	76.8
WP_009899234.1\|390483_391098_-	DUF3164 family protein	A4JWM8	Burkholderia_virus	2.2e-93	83.4
WP_009899237.1\|391194_391527_-	hypothetical protein	Q6QIE2	Burkholderia_phage	2.5e-22	58.2
WP_009899239.1\|391558_392812_-	AAA family ATPase	Q6QIE1	Burkholderia_phage	7.2e-155	69.1
392104:392123	attL	NA	NA	NA	NA
WP_009899242.1\|392808_394605_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6QIE0	Burkholderia_phage	4.3e-278	80.2
WP_009899243.1\|394619_395585_-	hypothetical protein	A4JWN3	Burkholderia_virus	1.4e-102	70.3
WP_009899245.1\|395598_395910_-	helix-turn-helix domain-containing protein	A4JWN4	Burkholderia_virus	1.7e-33	80.0
WP_155772941.1\|395906_396350_-	hypothetical protein	NA	NA	NA	NA
WP_009906820.1\|396424_396667_-	DNA-binding protein	Q6QID3	Burkholderia_phage	7.3e-32	90.0
WP_050789956.1\|396797_397217_+	helix-turn-helix transcriptional regulator	A4JWR8	Burkholderia_virus	6.7e-25	51.4
WP_052689340.1\|397282_398146_+	hypothetical protein	A4JWN9	Burkholderia_virus	2.4e-24	29.3
WP_009906937.1\|398648_398996_+	membrane protein	Q6QIC8	Burkholderia_phage	1.2e-43	79.1
WP_025405408.1\|398998_399607_+	transglycosylase SLT domain-containing protein	Q6QIC7	Burkholderia_phage	3.9e-90	79.8
WP_155275021.1\|399771_400206_+	hypothetical protein	A4JWP5	Burkholderia_virus	4.4e-43	69.3
WP_009906940.1\|400202_400541_+	hypothetical protein	A4JWP6	Burkholderia_virus	4.0e-44	82.7
WP_009906941.1\|400537_400870_+	hypothetical protein	Q6QIC3	Burkholderia_phage	1.9e-46	77.8
WP_025405411.1\|401202_401517_-	hypothetical protein	NA	NA	NA	NA
WP_009906942.1\|401687_402152_+	hypothetical protein	Q6QIB2	Burkholderia_phage	3.9e-42	60.1
WP_009906943.1\|402148_402394_+	hypothetical protein	Q6QIB1	Burkholderia_phage	1.7e-20	62.5
WP_009906944.1\|402397_403831_+\|tail	tail protein	A4JWK5	Burkholderia_virus	4.7e-243	87.2
WP_009906945.1\|403832_404357_+\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	2.9e-86	90.2
WP_009906946.1\|404661_404991_+\|tail	phage tail assembly protein	Q6QIA8	Burkholderia_phage	1.8e-25	65.7
WP_009906947.1\|404962_405121_+	hypothetical protein	Q6QIA7	Burkholderia_phage	2.5e-17	80.8
WP_039339607.1\|405271_407830_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.4e-186	49.8
WP_009906887.1\|407831_408734_+\|tail	phage tail protein	Q6QIA4	Burkholderia_phage	3.5e-71	72.1
WP_009906886.1\|408733_408940_+	membrane protein	A4JWL2	Burkholderia_virus	1.5e-25	78.3
WP_099975756.1\|408936_410133_+	phage protein D	A4JWL3	Burkholderia_virus	1.2e-135	70.3
WP_009906884.1\|410129_410732_+\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	4.3e-65	69.0
WP_135351490.1\|410745_410955_-	hypothetical protein	NA	NA	NA	NA
WP_009906962.1\|412247_413342_+\|transposase	IS5-like element ISButh6 family transposase	NA	NA	NA	NA
WP_009907016.1\|413624_414068_+\|tail	phage tail protein	NA	NA	NA	NA
WP_009907015.1\|414362_414716_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	4.2e-52	82.9
WP_009907014.1\|414712_415864_+\|plate	baseplate protein	A4JWL6	Burkholderia_virus	2.3e-168	79.9
WP_009907013.1\|415856_416438_+\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	1.5e-91	86.5
WP_009907012.1\|416437_418402_+\|tail	tail fiber protein	Q45YG3	Burkholderia_virus	3.9e-131	58.1
WP_009907011.1\|418417_419119_+\|tail	tail assembly chaperone	E5E3Q6	Burkholderia_phage	1.1e-59	59.7
WP_080558217.1\|420217_421486_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.3e-39	42.8
425713:425732	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1876395 : 1943143

Aeromonas_phage(25.0%)

holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009900960.1\|1876395_1877346_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009900964.1\|1877613_1878558_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_009900966.1\|1879031_1880735_+	peptidase	NA	NA	NA	NA
WP_009900968.1\|1880853_1882080_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_009907969.1\|1882138_1883281_-	porin	NA	NA	NA	NA
WP_019254804.1\|1883508_1884546_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009900970.1\|1884542_1886096_-\|holin	choline-sulfatase	NA	NA	NA	NA
WP_009900971.1\|1886258_1887131_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009900972.1\|1887274_1888150_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_009898039.1\|1888236_1889892_-	APC family permease	NA	NA	NA	NA
WP_009900973.1\|1890071_1890935_-	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_019254807.1\|1891044_1892184_-	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_009898044.1\|1892204_1893446_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_009900977.1\|1893497_1894283_-	drug:proton antiporter	NA	NA	NA	NA
WP_009900978.1\|1894279_1895461_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_009900979.1\|1895465_1897391_-	(Fe-S)-binding protein	NA	NA	NA	NA
WP_009900980.1\|1897393_1899457_-	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_009898053.1\|1899517_1900051_-	4-vinyl reductase	NA	NA	NA	NA
WP_009900981.1\|1900198_1901170_-	membrane dipeptidase	NA	NA	NA	NA
WP_009898057.1\|1901241_1902516_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	6.9e-105	53.4
WP_009898058.1\|1902924_1903950_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_009900982.1\|1904142_1905342_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	1.4e-11	26.8
WP_009900983.1\|1905687_1906704_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_025405822.1\|1906977_1908462_+	glycoside hydrolase 68 family protein	NA	NA	NA	NA
WP_025987348.1\|1908580_1910254_+	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	1.0e-55	31.0
WP_039339746.1\|1910705_1911974_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_025405551.1\|1912239_1913802_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_009906874.1\|1913854_1914820_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_009896564.1\|1914952_1916524_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_039339117.1\|1916520_1917798_-	glycosyltransferase	NA	NA	NA	NA
WP_009896560.1\|1918077_1918977_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_019255885.1\|1919549_1919825_-	hypothetical protein	NA	NA	NA	NA
WP_009900992.1\|1920134_1920440_-	hypothetical protein	NA	NA	NA	NA
WP_009893756.1\|1920595_1920955_-	hypothetical protein	NA	NA	NA	NA
WP_009893757.1\|1921013_1924508_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_009893758.1\|1924504_1926232_-	OmpA family protein	NA	NA	NA	NA
WP_009893759.1\|1926314_1927676_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_009900994.1\|1927672_1928266_-	hypothetical protein	NA	NA	NA	NA
WP_009893761.1\|1928271_1928661_-	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_009893763.1\|1928700_1929417_-	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_009900995.1\|1929419_1930490_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_009900996.1\|1930489_1932706_-	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_039339121.1\|1932709_1934998_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_025405827.1\|1935166_1937458_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_009901009.1\|1937448_1940292_-	type VI secretion system ATPase TssH	A0A2I7REQ1	Vibrio_phage	1.2e-61	27.0
WP_009901010.1\|1940294_1941284_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_009901011.1\|1941280_1943143_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_3

2037151 : 2149312

100

Burkholderia_virus(78.46%)

portal,integrase,tail,transposase,capsid,holin,protease,head,terminase

attL 2088230:2088259|attR 2144683:2144712

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009901105.1\|2037151_2037535_+\|transposase	transposase	NA	NA	NA	NA
WP_009901107.1\|2038007_2038961_+	hypothetical protein	NA	NA	NA	NA
WP_009901108.1\|2039252_2040302_-	hypothetical protein	NA	NA	NA	NA
WP_011401450.1\|2040305_2041352_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_025405852.1\|2041364_2041934_-	acetyltransferase	NA	NA	NA	NA
WP_029227266.1\|2041926_2042958_-	glycosyltransferase family 9 protein	NA	NA	NA	NA
WP_019254319.1\|2042887_2044096_-	glycosyltransferase family 9 protein	NA	NA	NA	NA
WP_009901115.1\|2044317_2045361_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_009901116.1\|2045376_2046732_-	membrane protein	NA	NA	NA	NA
WP_009901117.1\|2047010_2048771_-	GNAT family N-acetyltransferase	A0A2K9L470	Tupanvirus	1.5e-36	37.0
WP_009901118.1\|2048796_2050149_-	lipopolysaccharide biosynthesis protein RfbH	A0A0P0YLZ6	Yellowstone_lake_phycodnavirus	1.0e-50	36.1
WP_009901119.1\|2050152_2051238_-	CDP-glucose 4,6-dehydratase	J7Q7J8	Aeropyrum_coil-shaped_virus	1.1e-13	29.6
WP_009901121.1\|2051228_2052005_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_009901124.1\|2052001_2053219_-	chain-length determining protein	NA	NA	NA	NA
WP_009901125.1\|2053223_2055776_-	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_162096848.1\|2056541_2056940_+	hypothetical protein	NA	NA	NA	NA
WP_009901126.1\|2057025_2057670_+	hypothetical protein	NA	NA	NA	NA
WP_009901127.1\|2057671_2060659_+	YjbH domain-containing protein	NA	NA	NA	NA
WP_080558076.1\|2061017_2062730_-	thiamine pyrophosphate-binding protein	M4QSI1	Ostreococcus_lucimarinus_virus	3.2e-65	31.7
WP_009893910.1\|2062962_2063370_-	hypothetical protein	NA	NA	NA	NA
WP_162486559.1\|2063556_2063922_+	hypothetical protein	NA	NA	NA	NA
WP_009901130.1\|2064072_2064765_+	hypothetical protein	NA	NA	NA	NA
WP_009901131.1\|2064897_2068461_+	hypothetical protein	NA	NA	NA	NA
WP_009901132.1\|2068474_2080843_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_009901133.1\|2080833_2081568_+	hypothetical protein	NA	NA	NA	NA
WP_144410512.1\|2081818_2082939_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.8e-49	39.9
WP_144410526.1\|2083214_2084452_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	9.9e-157	95.1
WP_038709965.1\|2085631_2086051_+	hypothetical protein	NA	NA	NA	NA
WP_144410567.1\|2086108_2086291_+	hypothetical protein	NA	NA	NA	NA
WP_009899900.1\|2086309_2088166_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
2088230:2088259	attL	NA	NA	NA	NA
WP_144410568.1\|2088596_2089145_-	hypothetical protein	NA	NA	NA	NA
WP_009899898.1\|2089141_2089423_-	hypothetical protein	NA	NA	NA	NA
WP_009899897.1\|2090278_2090965_-	DUF159 family protein	Q8W6R8	Burkholderia_virus	1.3e-121	92.2
WP_029227221.1\|2091049_2091691_+	hypothetical protein	Q8W6R9	Burkholderia_virus	2.0e-108	90.1
WP_025990442.1\|2091820_2092915_-	DUF3396 domain-containing protein	Q8W6S0	Burkholderia_virus	5.2e-202	95.5
WP_010109969.1\|2092942_2093677_-	VRR-NUC domain-containing protein	Q8W6S1	Burkholderia_virus	7.0e-134	96.3
WP_009899893.1\|2093673_2094234_-	hypothetical protein	A4JX23	Burkholderia_virus	6.1e-98	94.1
WP_009899892.1\|2094429_2095311_-	hypothetical protein	Q8W6S3	Burkholderia_virus	2.4e-117	81.6
WP_009899891.1\|2095474_2096017_-	lysozyme	A4JX21	Burkholderia_virus	1.3e-73	86.7
WP_038709960.1\|2096016_2096508_-	lysozyme	Q6JIK8	Burkholderia_virus	4.7e-78	87.7
WP_004552929.1\|2096500_2096713_-\|holin	class II holin gp23	Q8W6S7	Burkholderia_virus	6.6e-29	100.0
WP_009899887.1\|2096755_2097499_-	hypothetical protein	Q8W6S8	Burkholderia_virus	1.4e-102	72.0
WP_099975702.1\|2097498_2097726_-	hypothetical protein	Q8W6S9	Burkholderia_virus	4.6e-28	73.3
WP_009899885.1\|2097803_2101118_-	DUF1983 domain-containing protein	Q8W6T0	Burkholderia_virus	0.0e+00	94.6
WP_029227219.1\|2101114_2101699_-\|tail	tail assembly protein	Q6JIL3	Burkholderia_virus	1.5e-94	93.8
WP_009899883.1\|2101695_2102448_-	C40 family peptidase	Q6JIL4	Burkholderia_virus	8.4e-135	89.6
WP_009899882.1\|2102497_2103181_-\|tail	phage minor tail protein L	Q6JIL5	Burkholderia_virus	3.4e-127	94.7
WP_029227218.1\|2103177_2104566_-\|tail	tail fiber domain-containing protein	Q8W6T4	Burkholderia_virus	3.7e-245	89.6
WP_009899880.1\|2104574_2104913_-\|tail	phage tail protein	Q8W6T5	Burkholderia_virus	4.4e-59	96.4
WP_039339132.1\|2104909_2108974_-\|tail	phage tail tape measure protein	Q6JIL8	Burkholderia_virus	0.0e+00	90.0
WP_009901135.1\|2108987_2109266_-	DUF4035 domain-containing protein	Q8W6T7	Burkholderia_virus	2.4e-39	94.7
WP_029227267.1\|2109265_2109730_-\|tail	tail assembly protein	A4JX08	Burkholderia_virus	1.8e-79	96.1
WP_009901137.1\|2109756_2110212_-	hypothetical protein	Q8W6T9	Burkholderia_virus	1.1e-73	95.3
WP_009901138.1\|2110274_2110622_-	DUF3168 domain-containing protein	Q6JIM2	Burkholderia_virus	6.8e-55	92.2
WP_009901139.1\|2110618_2111041_-	HK97 gp10 family phage protein	Q6JIM3	Burkholderia_virus	5.5e-67	96.4
WP_038710370.1\|2111033_2111363_-\|head	phage head closure protein	Q6JIM4	Burkholderia_virus	2.1e-45	79.8
WP_029227269.1\|2111365_2111728_-\|head,tail	phage gp6-like head-tail connector protein	Q6JIM5	Burkholderia_virus	1.2e-46	80.0
WP_038710381.1\|2111731_2111956_-	hypothetical protein	Q6JIM6	Burkholderia_virus	6.1e-25	75.3
WP_029227270.1\|2112018_2113275_-\|capsid	phage major capsid protein	Q6JIM7	Burkholderia_virus	8.1e-215	94.5
WP_009901144.1\|2113277_2113964_-\|head,protease	HK97 family phage prohead protease	Q6JIM8	Burkholderia_virus	3.7e-121	95.2
WP_009901146.1\|2113944_2115258_-\|portal	phage portal protein	Q6JIM9	Burkholderia_virus	1.0e-204	81.2
WP_029227271.1\|2115254_2116928_-\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	2.7e-266	80.8
WP_029227272.1\|2116927_2117407_-\|terminase	terminase small subunit	Q3HQS6	Burkholderia_phage	9.0e-58	82.1
WP_009901149.1\|2117526_2117736_-	HNH endonuclease	NA	NA	NA	NA
WP_059601806.1\|2117978_2118236_+	type II toxin-antitoxin system RelE/ParE family toxin	Q8W6N1	Burkholderia_virus	7.0e-41	98.8
WP_009901152.1\|2118232_2118628_+	helix-turn-helix transcriptional regulator	Q8W6N2	Burkholderia_virus	5.0e-62	96.1
WP_009901154.1\|2118661_2119141_-	hypothetical protein	Q3HQX5	Burkholderia_phage	6.3e-19	78.6
WP_144410569.1\|2119624_2119960_+	hypothetical protein	NA	NA	NA	NA
WP_144410570.1\|2119949_2120360_+	hypothetical protein	NA	NA	NA	NA
WP_009901158.1\|2120522_2121047_+	hypothetical protein	NA	NA	NA	NA
WP_144410571.1\|2121758_2123777_+	hypothetical protein	NA	NA	NA	NA
WP_102869147.1\|2124173_2125373_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-43	43.2
WP_009901163.1\|2125517_2126165_-	hypothetical protein	Q8W6N4	Burkholderia_virus	9.2e-106	93.0
WP_009901164.1\|2126173_2126434_-	hypothetical protein	Q8W6N5	Burkholderia_virus	9.9e-43	95.3
WP_009901165.1\|2126409_2126691_-	hypothetical protein	Q3HR03	Burkholderia_phage	1.1e-31	77.9
WP_038710377.1\|2126744_2127167_-	DUF1364 family protein	Q6JIF7	Burkholderia_virus	2.2e-52	71.1
WP_009901169.1\|2127163_2127538_-	hypothetical protein	A4JX57	Burkholderia_virus	1.8e-53	85.5
WP_029227276.1\|2127534_2128086_-	DUF1064 domain-containing protein	A4JX56	Burkholderia_virus	1.8e-86	89.1
WP_029227277.1\|2128082_2129075_-	hypothetical protein	Q6JIG0	Burkholderia_virus	5.5e-174	97.6
WP_009901173.1\|2129228_2129489_-	helix-turn-helix domain-containing protein	Q6JIG2	Burkholderia_virus	3.8e-34	86.0
WP_029227278.1\|2129485_2130307_-	hypothetical protein	Q8W6P2	Burkholderia_virus	9.2e-143	97.8
WP_009901176.1\|2130341_2131316_-	phosphoadenosine phosphosulfate reductase family protein	A4JX51	Burkholderia_virus	2.0e-149	77.4
WP_009901177.1\|2131753_2132044_+	DUF4145 domain-containing protein	A4JX50	Burkholderia_virus	4.3e-47	97.9
WP_009901178.1\|2132214_2132655_-	hypothetical protein	Q8W6P5	Burkholderia_virus	8.8e-76	97.9
WP_009901179.1\|2132838_2133075_+	hypothetical protein	NA	NA	NA	NA
WP_009901180.1\|2133287_2133530_-	Cro/Cl family transcriptional regulator	C7BGF8	Burkholderia_phage	5.4e-27	71.4
WP_009901181.1\|2133615_2134008_+	hypothetical protein	Q8W6P8	Burkholderia_virus	6.9e-64	94.6
WP_025987318.1\|2134904_2135180_+	hypothetical protein	Q8W6Q1	Burkholderia_virus	2.0e-41	91.2
WP_009901186.1\|2135918_2136731_+	prohibitin family protein	Q8W6Q7	Burkholderia_virus	2.0e-142	97.0
WP_009901187.1\|2137003_2137711_+	hypothetical protein	Q6JII4	Burkholderia_virus	1.2e-109	84.7
WP_009901188.1\|2137836_2138511_+	hypothetical protein	Q8W6Q9	Burkholderia_virus	1.8e-112	89.5
WP_009901192.1\|2140279_2141230_+	phage Gp37/Gp68 family protein	Q6JIJ3	Burkholderia_virus	3.2e-123	67.5
WP_009901193.1\|2141226_2141889_+	hypothetical protein	A0A059VF56	Pseudomonas_phage	4.3e-34	42.0
WP_009901194.1\|2141891_2142221_-	hypothetical protein	NA	NA	NA	NA
WP_025987319.1\|2142269_2142512_-	hypothetical protein	Q6JIJ4	Burkholderia_virus	3.1e-30	84.6
WP_009901196.1\|2142520_2142730_-	hypothetical protein	Q6JIJ5	Burkholderia_virus	1.8e-31	91.3
WP_009901198.1\|2143370_2144570_+\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	1.1e-107	52.6
WP_009901199.1\|2144842_2146858_-	VC_2705 family sodium/solute symporter	NA	NA	NA	NA
2144683:2144712	attR	NA	NA	NA	NA
WP_045143316.1\|2146851_2147232_-	DUF4212 domain-containing protein	NA	NA	NA	NA
WP_009901201.1\|2147329_2149312_-	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	8.9e-83	44.3

DBSCAN-SWA_4

2649018 : 2673417

uncultured_virus(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080558217.1\|2649018_2650287_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.3e-39	42.8
WP_157779363.1\|2650361_2650895_-	DUF2326 domain-containing protein	NA	NA	NA	NA
WP_144410512.1\|2650966_2652087_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.8e-49	39.9
WP_144410514.1\|2652211_2653445_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	2.4e-102	65.9
WP_009906959.1\|2654072_2654303_+	hypothetical protein	NA	NA	NA	NA
WP_009906958.1\|2654400_2654718_+	hypothetical protein	NA	NA	NA	NA
WP_099975758.1\|2654805_2654955_+	hypothetical protein	NA	NA	NA	NA
WP_009906957.1\|2655289_2655574_+	hypothetical protein	NA	NA	NA	NA
WP_009906956.1\|2655863_2656076_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_080558217.1\|2656165_2657434_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.3e-39	42.8
WP_034175064.1\|2658731_2658917_+	hypothetical protein	NA	NA	NA	NA
WP_009907020.1\|2658917_2659184_+	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_029227483.1\|2659275_2660874_+	SagB/ThcOx family dehydrogenase	NA	NA	NA	NA
WP_006480091.1\|2661241_2661973_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_080001171.1\|2662209_2662413_+	hypothetical protein	NA	NA	NA	NA
WP_029227484.1\|2662608_2663031_-	HicB family protein	NA	NA	NA	NA
WP_009907027.1\|2663155_2663977_+	fatty acid desaturase	NA	NA	NA	NA
WP_029227485.1\|2664073_2664253_-	hypothetical protein	NA	NA	NA	NA
WP_009907030.1\|2665239_2665527_-	hypothetical protein	NA	NA	NA	NA
WP_009907031.1\|2665575_2665848_-	hypothetical protein	NA	NA	NA	NA
WP_012339007.1\|2665911_2666109_-	hypothetical protein	NA	NA	NA	NA
WP_009907033.1\|2666645_2666963_+	hypothetical protein	NA	NA	NA	NA
WP_009907034.1\|2667125_2667386_+	hypothetical protein	NA	NA	NA	NA
WP_012339006.1\|2667657_2667897_-	hypothetical protein	NA	NA	NA	NA
WP_012339005.1\|2667965_2668205_-	hypothetical protein	NA	NA	NA	NA
WP_009907039.1\|2668928_2669132_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	5.9e-19	70.1
WP_155772935.1\|2669360_2669516_-	hypothetical protein	NA	NA	NA	NA
WP_009907041.1\|2669673_2669919_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_038711778.1\|2670013_2670298_+	hypothetical protein	NA	NA	NA	NA
WP_009907043.1\|2670546_2670744_-	hypothetical protein	NA	NA	NA	NA
WP_039336681.1\|2671115_2671478_+\|transposase	transposase	NA	NA	NA	NA
WP_029227479.1\|2671477_2671825_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	70.1
WP_009906954.1\|2671854_2673417_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.1e-143	52.1

DBSCAN-SWA_5

2723710 : 2782141

Leptospira_phage(25.0%)

holin,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009898227.1\|2723710_2725906_+\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA
WP_144410576.1\|2725986_2727074_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.4e-44	37.2
WP_004523721.1\|2727393_2727813_-	YjbQ family protein	NA	NA	NA	NA
WP_004523720.1\|2727832_2728159_-	thioredoxin family protein	NA	NA	NA	NA
WP_004523719.1\|2728631_2729324_+	hypothetical protein	NA	NA	NA	NA
WP_080558009.1\|2730146_2730503_-	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_009898259.1\|2730979_2732122_-	porin	NA	NA	NA	NA
WP_009898264.1\|2732754_2733678_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009898267.1\|2734295_2734598_-	hypothetical protein	NA	NA	NA	NA
WP_155275044.1\|2735244_2735478_+	hypothetical protein	NA	NA	NA	NA
WP_019255401.1\|2735591_2736791_-	transcriptional regulator CynR	NA	NA	NA	NA
WP_019255400.1\|2736790_2738215_-	TolC family protein	NA	NA	NA	NA
WP_009898285.1\|2738208_2739108_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_009894707.1\|2739109_2739334_-	DUF1656 domain-containing protein	NA	NA	NA	NA
WP_038708432.1\|2739330_2741397_-	FUSC family protein	NA	NA	NA	NA
WP_009898294.1\|2742406_2743948_-	membrane protein	NA	NA	NA	NA
WP_155275045.1\|2744295_2744652_-	hypothetical protein	NA	NA	NA	NA
WP_039339343.1\|2745496_2747392_+	hypothetical protein	K4F7R4	Cronobacter_phage	6.9e-08	46.1
WP_009898304.1\|2747467_2748919_-	PhoPQ-regulated protein	NA	NA	NA	NA
WP_080558013.1\|2748990_2749197_+	hypothetical protein	NA	NA	NA	NA
WP_025987413.1\|2749169_2749763_-	membrane protein	NA	NA	NA	NA
WP_009898306.1\|2750348_2750903_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_038708388.1\|2750984_2751710_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_009898310.1\|2751869_2754566_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_009898312.1\|2754585_2755131_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_025987410.1\|2755161_2755851_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_029227146.1\|2755853_2757530_+	OmpA family protein	NA	NA	NA	NA
WP_009898320.1\|2757873_2758413_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_009898321.1\|2758446_2759946_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_009894730.1\|2760146_2760629_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_019255186.1\|2760756_2761299_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_025405980.1\|2761304_2762654_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_009898325.1\|2762650_2763952_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_009898327.1\|2763966_2767875_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_009898329.1\|2768065_2768635_+	hypothetical protein	NA	NA	NA	NA
WP_039339348.1\|2768735_2771429_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.9e-35	26.0
WP_004523693.1\|2771503_2771773_+	PAAR motif protein	NA	NA	NA	NA
WP_029227147.1\|2771785_2775238_+	RHS repeat protein	NA	NA	NA	NA
WP_038709601.1\|2775130_2776489_-	hypothetical protein	A0A292GJ55	Xanthomonas_phage	7.6e-110	49.6
WP_009894750.1\|2776521_2777550_-	fimbrial protein	NA	NA	NA	NA
WP_009898344.1\|2777605_2778676_-	type VI secretion protein ImpA	NA	NA	NA	NA
WP_009898345.1\|2778694_2779744_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_009894755.1\|2779740_2781621_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_009894757.1\|2781622_2782141_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP008914

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP008914_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008914_1

1661428-1661519

Orphan

Consensus_repeat	Method
TGTCGCTCGATGCGCTCGAGCGGCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008914_1

>merge|NZ_CP008914|1|1661428-1661519|CRISPRCasFinder
TGTCGCTCGATGCGCTCGAGCGGCTCGTCGGTGTGAATCTCGCGCGGCTGCGCGCGGAACGCCAGCTGTCGCTCGATGCGCTCGCGCGGCTC

>NZ_CP008914|1|1|1661428-1661519|CRISPRCasFinder
TGTCGCTCGATGCGCTCGAGCGGCTC	GTCGGTGTGAATCTCGCGCGGCTGCGCGCGGAACGCCAGC
TGTCGCTCGATGCGCTCGCGCGGCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008914.2\|WP_009902993.1\|1656203_1657274_-\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|376820
NZ_CP008914.2\|WP_009903009.1\|1668469_1668841_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008914.2\|WP_009903007.1\|1666769_1668302_-\|glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237027
NZ_CP008914.2\|WP_009892892.1\|1652809_1653697_-\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|226910
NZ_CP008914.2\|WP_009902997.1\|1658973_1659906_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP008914.2\|WP_025405339.1\|1651052_1652768_-\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|234721
NZ_CP008914.2\|WP_009902999.1\|1660051_1661224_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP008914.2\|WP_009902991.1\|1654841_1655639_-\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|237573
NZ_CP008914.2\|WP_009903005.1\|1665161_1666664_-\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|234594
NZ_CP008914.2\|WP_009903002.1\|1663218_1663905_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319828
NZ_CP008914.2\|WP_009902979.1\|1649749_1650757_-\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
NZ_CP008914.2\|WP_009892890.1\|1654152_1654785_-\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|226226
NZ_CP008914.2\|WP_009903011.1\|1670442_1672107_+\|gamma-glutamyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223482
NZ_CP008914.2\|WP_004189182.1\|1668907_1669105_-\|phage-tail-assembly-chaperone	unknown	unknown	unknown
NZ_CP008914.2\|WP_009903001.1\|1662425_1663148_+\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	unknown	unknown	gnl\|CDD\|235119
NZ_CP008914.2\|WP_009903013.1\|1672412_1673246_+\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|153097
NZ_CP008914.2\|WP_009892864.1\|1669424_1670204_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP008914.2\|WP_009902995.1\|1657297_1658671_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673
NZ_CP008914.2\|WP_009902977.1\|1647633_1649733_-\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NZ_CP008914.2\|WP_009892878.1\|1664331_1665048_-\|aquaporin-family-protein	unknown	unknown	gnl\|CDD\|223653

Protein	Function_ID	Function_description	E-value
NZ_CP008914.2\|WP_009902993.1\|1656203_1657274_-\|PhoH-family-protein	gnl\|CDD\|376820	pfam02562, PhoH, PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.	3.45214e-140
NZ_CP008914.2\|WP_009903007.1\|1666769_1668302_-\|glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|237027	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed.	0
NZ_CP008914.2\|WP_009892892.1\|1652809_1653697_-\|HlyC/CorC-family-transporter	gnl\|CDD\|226910	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism].	9.20756e-141
NZ_CP008914.2\|WP_009902997.1\|1658973_1659906_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.58465e-69
NZ_CP008914.2\|WP_025405339.1\|1651052_1652768_-\|apolipoprotein-N-acyltransferase	gnl\|CDD\|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	0
NZ_CP008914.2\|WP_009902999.1\|1660051_1661224_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	2.12007e-99
NZ_CP008914.2\|WP_009902991.1\|1654841_1655639_-\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|237573	PRK13963, PRK13963, rRNA maturation RNase YbeY.	2.1871e-153
NZ_CP008914.2\|WP_009903005.1\|1665161_1666664_-\|glycerol-kinase-GlpK	gnl\|CDD\|234594	PRK00047, glpK, glycerol kinase GlpK.	0
NZ_CP008914.2\|WP_009903002.1\|1663218_1663905_-\|HAD-family-hydrolase	gnl\|CDD\|319828	cd07526, HAD_BPGM_like, subfamily of beta-phosphoglucomutase-like family, similar to Escherichia coli 6-phosphogluconate phosphatase YieH. This subfamily includes Escherichia coli YieH/HAD3 an 6-phosphogluconate phosphatase, which can hydrolyzed purines and pyrimidines as secondary substrates. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate, and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.27987e-48
NZ_CP008914.2\|WP_009902979.1\|1649749_1650757_-\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP008914.2\|WP_009892890.1\|1654152_1654785_-\|gamma-glutamylcyclotransferase	gnl\|CDD\|226226	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism].	1.09506e-57
NZ_CP008914.2\|WP_009903011.1\|1670442_1672107_+\|gamma-glutamyltransferase-family-protein	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
NZ_CP008914.2\|WP_009903001.1\|1662425_1663148_+\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	gnl\|CDD\|235119	PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional.	7.72323e-122
NZ_CP008914.2\|WP_009903013.1\|1672412_1673246_+\|ferritin-like-domain-containing-protein	gnl\|CDD\|153097	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyubiquinone hydroxylases (DMQH), DNA protecting proteins (DPS), and ubiquinol oxidases (AOX), and the aerobic cyclase system, Fe-containing subunit (ACSF).	1.43579e-10
NZ_CP008914.2\|WP_009892864.1\|1669424_1670204_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	3.83635e-99
NZ_CP008914.2\|WP_009902995.1\|1657297_1658671_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NZ_CP008914.2\|WP_009902977.1\|1647633_1649733_-\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NZ_CP008914.2\|WP_009892878.1\|1664331_1665048_-\|aquaporin-family-protein	gnl\|CDD\|223653	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism].	1.57915e-71

>NZ_CP008914.2|WP_009902999.1|1660051_1661224_+|MFS-transporter
MPLPLLALAISAFAIGTTEFVIMGLLPDVARDLAVTLPSAGLLVSGYALGVAAGAPLLAVLTSRMPRKAALQLLMAIFIAGNVLCALAQSYGMLMFARVVTSFAHGSFFGIGAVVAASLVSVDKRASAIALMFTGLTLANVLGVPFGTFVGQTLGWRATFWIVAALGVASLAGVAALVPKQRDAGRAALGRELRVLKEPQVWLALAMTVLGFGGVFVVFTYIAPILEDVTGFSPHAVSLVLVLFGVGLTIGNAIGGRLADRALMPSLIAILVALIAVMAVFAKTSHLPAAAAVTVFVWGIAAFATVPPLQSRVVEKAAHAPNLASTLNIGAFNVGNAGGAWLGGVALSHGAPLDALPWVAAVVTLAALAVTVLAARLDTRVSPGAAAAAQ
>NZ_CP008914.2|WP_009902997.1|1658973_1659906_-|LysR-family-transcriptional-regulator
MDRLGDIRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAQVSTRLFERSTRRLRLTDEGRLYLNCCRQALQALDDADAMLQEGRNVVSGKVRLSSTADFGRNQLLDWLDEFNARYPDVTFSVTASDSSSNLWQDEIDLAIRFAAPPDGALIARPLAANRRVLCASPAFVDKYGTPKDPLDLARFPCNVITVASGPINVWRFTRGGDTQTYTVPLANAHETNDGGLTREWTIRGHGIALKSIWDIARDVRAGRLKVLLPEWRHQDAPLHAIHHSKRYMAPRVRVLLDFLVERFAQEEKALEDLLNACR
>NZ_CP008914.2|WP_009902995.1|1657297_1658671_-|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDTPEDADIILFNTCSVREKAQEKVFSDLGRVRELKEAKPDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDARRESGRAQVDITFPEIEKFDHLPPARVEGPSAFVSIMEGCSKYCSYCVVPYTRGDEVSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTAGAHEIADFATLIEYVADIPGIERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSLIRKLRAIRPNLSLSTDIIVGFPGETEADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANLADDTPREVKLERLQHLQATIEENVARISQSMLGKVERILVEGPSRKDPNELAGRTENNRVVNFPAPLAAHARLIGQMIDVKINHAYPHSLRGELVLAHDDASAATH
>NZ_CP008914.2|WP_009902993.1|1656203_1657274_-|PhoH-family-protein
MKTAQALEFTAPRDDNARLANLCGPLDENLRQIEQALDVTLSRRGHRIAIRGRGARIALAALEDFYNRARDPLSVDDIQLALVEARHPGNPRRNGNGDGSGQPEVDVRFRGDPDHPFDEPVVRIGDEPHADEAAPKLYTRRADLRGRTPAQREYLKQILSHDVTFGVGPAGTGKTYLAVACAVDALERDQVKRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDKTAKMFERQMIEIAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVVTGDTSQVDLPRGHKSGLVEAQQVLGGVRGIALTRFTSADVVRHPLVARIVEAYDEFHAQHKDE
>NZ_CP008914.2|WP_009902991.1|1654841_1655639_-|rRNA-maturation-RNase-YbeY
MKSSRSSKSARAEAAQPEFPRLSLFDAKGKVKTVEAQALRVDFADGRSLMFDLSGSSGDAAVAIVAQHTDPSLRATIALRPEHYDSVTVEAGADENPDFAHDATDDAGEDAPDREPELDLAVQYGDEIGDAQRRSLPKRKVIAEWLEPAIFSDAQFTVRFVGADEGRTLNHSYRHKDYATNVLTFAYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAHLLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR
>NZ_CP008914.2|WP_009892890.1|1654152_1654785_-|gamma-glutamylcyclotransferase
MSRPAPARCPYPPSLGEARYLSDDELAASLDATLAGWDRTSDLWLFGYGSLIWNPGMPAVEALRGKVHGYHRGLYLWSRVNRGTPEQPGLVLALDRGGSCTGLAFRLAGGTAMPHLEALWRREMAMGSYRPAWLPCALAGGERVSALAFVMRRDVPTYTGKLTDDVVKAVFGCASGRYGTTLDYVSRTVAALRDSGMPDRALEALLARCR
>NZ_CP008914.2|WP_009892892.1|1652809_1653697_-|HlyC/CorC-family-transporter
MNDSYPSRKSSDKPHEKRSLLERLTDFISPEPDSRAELLEILQDAHERNLIDADSLSMIEGVFQVSDLCARDIMVPRAQMDALNIADKPEDFIPFVLEKAHSRYPVYEDNRDNVIGVLLAKDLLRFYAEEEFDVRGMLRPAVFIPESKRLNVLLHDFRVNRNHLAIVVDEYGGVAGLITIEDVLEQIVGDIEDEYDFDEEAGNIIAAPDGRYRVRALTEIEQFNETFGTDFSDEEVDTIGGLITHHFGRVPHRGEKVRLGDLLFEIQRGDARQIHVLLVRRAPLAGRRSGSAGED
>NZ_CP008914.2|WP_025405339.1|1651052_1652768_-|apolipoprotein-N-acyltransferase
MAEPISTRSQSSVSPTAAGRALPIWHYPSALLAGAANTLTFAPTPHGGWLQLAVFAWLFAQLTRTTSWKHAAATGGAFGFGNFISGIWWLYISMHVYGEMAAPLAGGALVLFCLYLSIYPAFSAGLWSFCAGHARNGKAADPRPFSPTWHGAFAFASAWAVGEWLRGTVLTGFPWLASGYAQVDGPLAGYASIVGVYGIGWVLALVAALGVQAIARAREGSNGRGGDRNNGGGNGRTDAPAGAVPLALRSPRVAAPALAAAALVALGPLLALVPWTVPANAPLTVRLLQGNVKQDIKFEEAGIQAAIAMYQKMITEKPADLVVTPETAIAVLIQELPEPFARAVRNFSDATDTAVLFGAVGGTVTNDGRIVDYTNSLYGVTPHSRDIYRYDKHHLVPFGEFIPWGFHWFVDLMKMPLGDFARGAPVQQPFIVRNQPVMADVCYEDIFGEEIAATIRDNPVSPGVLVNVTNLAWFGDTIALDQHLQIARMRSLETGRPMLRATNTGMTAAIDAHGRVIGRLKPFTIGSLDVRIEGTAGRTPYVTSGNATVLAMSLLLLAFGFAFGPRLRRRG
>NZ_CP008914.2|WP_009902979.1|1649749_1650757_-|glycine--tRNA-ligase-subunit-alpha
MLTFQQIILTLQSYWDRQGCALLQPIDMEVGAGTSHVHTFLRAIGPEPWRAAYVQPSRRPKDGRYGENPNRLQHYYQYQVVLKPAPENILDLYLGSLAALGFDLKQNDVRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLDCKPVLGEITYGLERLAMYLQKVENVYDLIWTEWEEQGPNGPEIRRLTYGDVYHQNEVEQSTYNFEQANVELLFTFFNSYEAEARRMIEAQLALPAYELVLKAGHTFNLLDARGAISVTERAAYIGRIRALSRLVAQAYYDSREKLGFPMIGNPVPGVPGLTTDAQEAAQPAWAPPLKAERKIDQD
>NZ_CP008914.2|WP_009902977.1|1647633_1649733_-|glycine--tRNA-ligase-subunit-beta
MTQNHSASLLVELLTEELPPKALARLSDAFAEGIAQRLAARDLIEGELAFERYATPRRLAVVVQNVRAVAPERQVREKVLPVSVALDAQGKPTAPLAKKLAALGHPNLSIADLERAHDGKAEAFFVNYASPGATLAEGLQAALDETLAKLPIPKVMTYQRPDGTDVQFVRPVHRLSALHDDRIVPVCAFGIDAGDTTLGHRFLSDGLVAIQHANAYADTLRDKGRVLAHFAGRKEAIRAQLEANADGDQVVMPEALLDEVTSLVEWPVVYPCRFEDEFLQVPQECLILTMQTNQKYFALTDAAGKLRSRFLIVSNIETKTPDEIVEGNERVVRPRLADAKFFFEQDKKKPLADRVPLLANVVYHNKLGSQLARIERLETLAGEIAPAIGADATVAIRAARLAKADLLTDMVGEFPELQGTMGTYYARHDGEPEDIAIACSEHYQPRFSGDALPTTPVSTAVALADKLETIVGIWGIGLAPTGEKDPFALRRHALGVLRLLLEKQLPLDLVWLLRTTYERFAAVPDVAESTDAIHAFFVERLRGLLRERGYTAGEVDAVLSLNPTRLDDIVARLDAVREFTRLAEAEALAAANKRISNILKKSESGANGAVQPALFVEAAEKALAEQLAEVTPRVQSQLEARAYTGALSALAALRAPVDAFFDGVMVNAEDPALRANRLALLSALHQQMNCVADISKLAA
>NZ_CP008914.2|WP_009903001.1|1662425_1663148_+|3,4-dihydroxy-2-butanone-4-phosphate-synthase
MSFPLPSKSAPADAFSDLPLLDAEPVPPRIAAALAALREGRAVVLQDDHDRENEADLIVAAERLTDETMALLIRECSGIVCLCLTDEKVRALALPPMAQLNESKNGTAFTVSIEARAGVTTGVSAADRVTTIRAAIADDAQPHDIVRPGHVFPLRAAPGGVLARRGHTEGTVDLAILAGLKPAGVLCELMNPDGTMTRGADVERFAAQHGLPMLTIAELVEFRERLASLRERDACCEGVA
>NZ_CP008914.2|WP_009903002.1|1663218_1663905_-|HAD-family-hydrolase
MLDHLICDCDGVLVDSEVIADRVLFDTLSAAFPAIDFTADAKAAFGQQTSRFLADLEARHGIAMPEDFLDTIEHNIETGLAQWLAPITGVRDALTKIALPAAVVSNSRLARVRNSLKRAALTDVFGERVFSAEQVARPKPYPDVYLHAARTLGVEPARCIVVEDSVSGLNAARAAGMKTIAFVGASHIPGGYEDALRKMGITRIMRSMDELPALVSAGMRGEFGDVQS
>NZ_CP008914.2|WP_009892878.1|1664331_1665048_-|aquaporin-family-protein
MSPYIAEFIGTALLVLLGNGAVANVLLAKTKGKGADLIVIVMGWAMAVFVAVYVTASFSGAHLNPIVTISLALAGKFAWAKVGGYIAAQMLGGMAGALLVWLAYRQHFAKETDPDLKLAVFCTAPAIRSVTHNVLTEAICTFVLILGVLYLASPQVGLGALDALPVGLLVLGIGISLGGPTGYAMSPARDLSPRIMHALLPIPGKRDSDWRYAWVPVLGPLVGGVLAANLYLYLHTAH
>NZ_CP008914.2|WP_009903005.1|1665161_1666664_-|glycerol-kinase-GlpK
MQDQYILALDQGTTSSRAMLFDRQGNIVSIAQKEFEQIYPRPGWVEHDPQEIWSTQAGVAAEAVTRVGLNGTSIAAIGITNQRETTIVWDRETGHPIYNAIVWQDRRTADFCDQLKAQGLSEKVRAKTGLPIDSYFSATKIRWILDNVEGAREKARQGKLAFGTVDSWLVWNFTKHELHVTDVTNASRTMLFNIHTLDWDDELLDALEIPRSMLPQVRASSEIYGPTKTTVFASKIPLAGIAGDQQAALFGQMCTSSGMVKNTYGTGCFLMMNTGETPIESQNNLVTTIAWQVDGKVNYALEGSIFIAGAVVQWLRDGLGIIKSASEIEALAAGVPHTDGVYLVPAFAGLGAPHWNARARGSLFGVTRGTTSAHLARAALDSIAYQSLDVLKAMEADSGIRIGELRVDGGASANNLLMQFQADLLGVDAVRPRVTETTALGAAYLAGLAIGYWKNVDELHSQWQLERRFAPSMQREQVSSCLSGWQRAVRAAKAWADDTQ
>NZ_CP008914.2|WP_009903007.1|1666769_1668302_-|glycerol-3-phosphate-dehydrogenase
MTQQNRYDLLVVGGGINGAGIARDAAGRGLSVLLCEQDDLASHTSSSSTKLIHGGLRYLEYKEFGLVRKALQERETLLRAAPHIIWPLRFVMPHMPNLRPAWLIRIGLFLYDHLAKRELLPGSRGIDMRRHPAGAPLVDSIKRGFVYSDGWVDDARLVVLNALDAQERGARILTRTKLVSAERRDGQWHARLQRADGSTLDVCARAVANAAGPWVGDVLHGALGRGAQHSVRLVKGSHIVTRRLFDHDHAYIFQNPDKRIIFAIPYERDFTLIGTTDVEYRDDPSRVAIDRDETRYLCESINRYFKRKISPADVCWTYSGVRPLLEDENADNPSAVTRDYRLELDGGDGAPLLSVFGGKITTFRKLAEEATDMLGGALGASRGAWTAGVPLPGGDIADARFAPFAEAFAKRHPWLPAALARRYARAYGTRAERVIGGAKSLAELGAELSPGLYEAELRYLRDAEWASCADDVLWRRSKLGLHVAPGTLDAVTAALDAWFGAAREAASAAH
>NZ_CP008914.2|WP_009903009.1|1668469_1668841_+|hypothetical-protein
MRTMIAAGALALLAGCAGGPAMFGGWGGPSFAELQRSCGDVRDYGEDAQAVYSAVFDAWVAKRHGKLTDARFCAFENELAQHRAALGTSTDPAERGRWVSYLNDARARALSWRAAVDPSLRGG
>NZ_CP008914.2|WP_004189182.1|1668907_1669105_-|phage-tail-assembly-chaperone
MLSPHEFATLLLVKDAPDQADMDRDELDALLERQLVKLEALGSGRKYCVTEIGDAALRSIKLRYS
>NZ_CP008914.2|WP_009892864.1|1669424_1670204_-|DeoR/GlpR-transcriptional-regulator
MTRDPRLTLNARQQELLEWVQRDGFVTVDDLAAHFNVTPQTIRRDVNWLADLNLLRRYHGGASLPTSSENVSYTARQRMFHDEKRRIAALAASHIPDQASLFINLGTTTEEVARALNRHRGLRVITNNLNVASMMSGYPECEVLITGGIVRPWDKGIVGELAIDFIRQFRVDYAIIGTSSIESDGTLRDFDTREVRVAEAIIQHARTVYLVTDHSKFGRPALVRQGHLNQIHALFTDKPLPDEMAETIAQAGTQVYVAD
>NZ_CP008914.2|WP_009903011.1|1670442_1672107_+|gamma-glutamyltransferase-family-protein
MTLHSNISGVPFSWRNPYLTTRVPVFARNVVSTSHPLAAQAGLRMLWKGGNAVDAAIAAAAAITVVEPVSCGLGGDAFALVWDGAKLHGLNASGVAPAAWSVDYFRRRHGDAGNGLARQPTRGWDTVTVPGVIAGWEALHAKFGSLPFADLLEPAIELAERGHAVAAVVAHKWAAAVPELNGQPGFAETFMPRGRAPEVSELVRLPGHAKTLRTIAAEGARAFYEGSIAESIAGFFRDGGGALTADDLRAYRPEWVEPIGKDFHGYTVHEIPPNGQGIAALIALGIVERFGLDDLPLDSAEAQHVQIEAMKLAFADVYRYVADPRAMALKPAQMLDDAYLDARAKLIDVTRATHFSFGMPRAGGTIYLSAADERGMMVSFIQSNYMGFGSGLVVPGTGIALQNRGCGFSMDPTSPNVVEGGKRPFHTIIPAFVTQQAGGARHAVMSFGVMGGDMQPQGHLQTIVRMLGYGQQPQAACDAPRWKVSRSFTLDVEAALGASVVDALAARGHTIQAIDDPYMDFGSGQFIWRLDRDEPDRGYVAASDSRRDGLAAGF
>NZ_CP008914.2|WP_009903013.1|1672412_1673246_+|ferritin-like-domain-containing-protein
MLADSGTTHEMPWRIEDIDLTRIDRQRAAANEDLLLLLCAASFIESGSDLYTSNLSQFFDDDPEVSAWLNTEWEHEELQHGRALKAYIAHVWPEFDWDLAFANFFDEYSKTCSLEAFEKTRALEMVARCVVETGTATLYRAINECSDEPVLKEITDNIRTDEVRHYKHFFRYFKKYNKVEGNGRLAVLGALMRRVLEIRNEDSEIALRHVFAIRYPDRAGDSAYCRERTARVNALVRRNLSADMCVKMLLKPLDLPAKIQPGVHYPLTKLTQHVFFR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

17341 : 76757

Bacillus_virus(11.11%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009904317.1\|17341_18643_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.6e-93	44.0
WP_009904316.1\|18800_19067_+	DUF2164 domain-containing protein	NA	NA	NA	NA
WP_009904315.1\|19107_20418_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.3e-79	39.8
WP_009889706.1\|20638_21349_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_009889704.1\|21420_23727_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	7.1e-84	49.9
WP_009904313.1\|24057_25020_+	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	3.2e-62	44.6
WP_025404821.1\|25183_25927_+	DNA mismatch repair protein MutS	NA	NA	NA	NA
WP_009904310.1\|25952_26573_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA
WP_009889694.1\|26833_27952_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	2.2e-22	34.5
WP_080554737.1\|28057_28903_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_009889690.1\|28904_29843_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_009904308.1\|29998_31246_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009904306.1\|31706_33176_+	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	1.4e-72	34.1
WP_009889688.1\|33267_33948_+	6-phosphogluconolactonase	NA	NA	NA	NA
WP_019254651.1\|33925_35851_+	bifunctional transcriptional regulator/glucokinase	NA	NA	NA	NA
WP_009904302.1\|36679_36889_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009889686.1\|37334_38135_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_009904300.1\|38211_38871_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_009889682.1\|38929_39655_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.4e-30	37.2
WP_009904298.1\|39681_40917_-	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	6.9e-25	25.5
WP_009904296.1\|41703_42162_+	hypothetical protein	NA	NA	NA	NA
WP_009904294.1\|43693_44830_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	7.4e-42	32.9
WP_009904292.1\|44844_45459_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	8.1e-27	36.7
WP_009889661.1\|45922_47059_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.7e-49	36.0
WP_004186056.1\|47138_47660_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2I2L4Y7	Orpheovirus	5.6e-13	36.8
WP_004185707.1\|47656_48094_+	transcription antitermination factor NusB	NA	NA	NA	NA
WP_009904291.1\|48157_49351_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_019254645.1\|49907_51011_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_009904289.1\|51591_53151_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_038708302.1\|53191_53866_+	LysE family transporter	NA	NA	NA	NA
WP_019254643.1\|53940_54924_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA
WP_009904286.1\|55033_55327_-	hypothetical protein	NA	NA	NA	NA
WP_009904284.1\|55752_56751_+	DUF2520 domain-containing protein	NA	NA	NA	NA
WP_009889645.1\|56835_57399_+	YggT family protein	NA	NA	NA	NA
WP_009889644.1\|57414_57771_-	DUF190 domain-containing protein	NA	NA	NA	NA
WP_009889642.1\|57792_58179_-	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	1.7e-22	49.5
WP_009904282.1\|58793_60014_+\|protease	serine protease	NA	NA	NA	NA
WP_009904281.1\|60282_61125_-	NAD-dependent protein deacetylase	S5M4R0	Bacillus_phage	7.5e-07	24.3
WP_009904279.1\|61361_62246_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009904278.1\|62378_63353_+	quinone oxidoreductase	NA	NA	NA	NA
WP_009904277.1\|63541_65479_-	hypothetical protein	NA	NA	NA	NA
WP_155772925.1\|65622_66645_+	hypothetical protein	NA	NA	NA	NA
WP_009904271.1\|67379_68102_+	DUF5343 domain-containing protein	NA	NA	NA	NA
WP_011544796.1\|68172_68475_+	hypothetical protein	NA	NA	NA	NA
WP_029227358.1\|68535_68853_-	hypothetical protein	NA	NA	NA	NA
WP_039336678.1\|69187_70444_-	hypothetical protein	NA	NA	NA	NA
WP_039336681.1\|70560_70923_+\|transposase	transposase	NA	NA	NA	NA
WP_029227479.1\|70922_71270_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	70.1
WP_009906954.1\|71299_72862_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.1e-143	52.1
WP_144410512.1\|73257_74378_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.8e-49	39.9
WP_052689349.1\|74408_74780_-\|transposase	transposase	NA	NA	NA	NA
WP_144410513.1\|74862_75363_-	hypothetical protein	NA	NA	NA	NA
WP_144410514.1\|75522_76757_-\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	2.4e-102	65.9

DBSCAN-SWA_2

290796 : 301340

unidentified_phage(14.29%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009904055.1\|290796_292341_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	2.5e-24	31.2
WP_009889265.1\|292376_292904_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_009889263.1\|292900_293584_+	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	3.3e-05	26.0
WP_009904054.1\|293648_294464_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	3.3e-36	32.9
WP_045143256.1\|294665_295886_+\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	1.7e-225	92.4
WP_039336891.1\|295952_297962_-	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	4.8e-52	34.9
WP_009889258.1\|297993_299124_-	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	1.8e-24	38.0
WP_009904051.1\|299387_301340_-	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	6.6e-147	50.3

DBSCAN-SWA_3

603388 : 649974

Burkholderia_virus(25.0%)

plate,transposase,integrase

attL 613811:613852|attR 657409:657450

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019255984.1\|603388_604489_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_009906861.1\|604452_606291_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_009888597.1\|606371_606854_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_009906860.1\|606911_607415_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_009888594.1\|607487_608978_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_009888592.1\|608994_609513_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_043036367.1\|609549_610239_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_025404121.1\|610612_611227_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_009906858.1\|611335_612682_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_009888580.1\|612678_613464_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
613811:613852	attL	NA	NA	NA	NA
WP_029227469.1\|614036_615401_+\|integrase	integrase arm-type DNA-binding domain-containing protein	NA	NA	NA	NA
WP_009906856.1\|615431_615815_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_009906855.1\|615798_616122_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_009906854.1\|616503_617031_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	7.9e-55	60.5
WP_009906853.1\|617027_617777_+	VRR-NUC domain-containing protein	A4JWV4	Burkholderia_virus	1.0e-60	57.5
WP_009906852.1\|617787_619002_+	DUF3396 domain-containing protein	E5E3X7	Burkholderia_phage	5.5e-144	68.2
WP_144410517.1\|619330_621895_-	hypothetical protein	NA	NA	NA	NA
WP_144410518.1\|621904_623146_-	hypothetical protein	NA	NA	NA	NA
WP_009906848.1\|623475_624678_-	DUF4338 domain-containing protein	NA	NA	NA	NA
WP_029227466.1\|624674_630038_-	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	5.4e-42	22.1
WP_144410519.1\|629925_630885_-	hypothetical protein	NA	NA	NA	NA
WP_009906846.1\|631323_633126_-	hypothetical protein	NA	NA	NA	NA
WP_009906845.1\|633122_633602_-	hypothetical protein	NA	NA	NA	NA
WP_029227464.1\|633598_634765_-	DUF4297 domain-containing protein	NA	NA	NA	NA
WP_080558212.1\|635433_635775_+	hypothetical protein	NA	NA	NA	NA
WP_009906843.1\|635883_636852_+	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	4.1e-57	42.0
WP_045143258.1\|636924_637920_+	endonuclease	A6XMH8	Bacillus_virus	9.4e-49	37.8
WP_009906841.1\|637931_638159_+	hypothetical protein	NA	NA	NA	NA
WP_009906840.1\|638225_639152_+	hypothetical protein	NA	NA	NA	NA
WP_029227462.1\|639148_640171_+	hypothetical protein	NA	NA	NA	NA
WP_029227461.1\|640232_641039_+	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_029227460.1\|641173_641473_+	hypothetical protein	NA	NA	NA	NA
WP_009906835.1\|641474_642128_+	hypothetical protein	NA	NA	NA	NA
WP_029227459.1\|642105_642447_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_069246059.1\|642623_643943_+	hypothetical protein	A0A0A8J8N7	Ralstonia_phage	1.2e-88	49.4
WP_069246068.1\|644010_645120_+	hypothetical protein	NA	NA	NA	NA
WP_009906830.1\|645635_647972_+	hypothetical protein	NA	NA	NA	NA
WP_144410520.1\|648051_648702_-	hypothetical protein	NA	NA	NA	NA
WP_144410514.1\|648739_649974_-\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	2.4e-102	65.9
657409:657450	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1072346 : 1128461

Burkholderia_virus(13.33%)

protease,transposase,tRNA,portal,integrase

attL 1064117:1064133|attR 1094691:1094707

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1064117:1064133	attL	NA	NA	NA	NA
WP_009906631.1\|1072346_1073750_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_009906630.1\|1073918_1075148_+\|integrase	tyrosine-type recombinase/integrase	Q858E8	Salmonella_phage	1.2e-66	38.7
WP_038711569.1\|1075246_1075846_+	DNA damage-inducible protein D	A0A1W6JPJ7	Morganella_phage	1.1e-47	66.0
WP_144410526.1\|1075877_1077115_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	9.9e-157	95.1
WP_009907005.1\|1078117_1080970_-	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	6.6e-71	35.2
WP_009907004.1\|1081114_1081456_-	hypothetical protein	NA	NA	NA	NA
WP_025405247.1\|1081452_1081710_-	hypothetical protein	NA	NA	NA	NA
WP_009907001.1\|1082249_1082729_-	hypothetical protein	NA	NA	NA	NA
WP_004525824.1\|1082728_1082899_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_009906999.1\|1083129_1083642_-	hypothetical protein	NA	NA	NA	NA
WP_025405250.1\|1084050_1084992_-	hypothetical protein	NA	NA	NA	NA
WP_025405251.1\|1084960_1086061_-	hypothetical protein	NA	NA	NA	NA
WP_158345901.1\|1086087_1086216_-	hypothetical protein	NA	NA	NA	NA
WP_009906996.1\|1086691_1087267_+	recombinase family protein	A0A219Y9V9	Aeromonas_phage	1.0e-23	41.2
WP_144410514.1\|1087414_1088648_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	2.4e-102	65.9
WP_144410527.1\|1088760_1089423_-	hypothetical protein	NA	NA	NA	NA
WP_009902046.1\|1089415_1090429_-	ParA family protein	Q7M293	Enterobacteria_phage	1.8e-31	31.5
WP_009902049.1\|1091927_1092152_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_009902051.1\|1092564_1093725_+	DUF4382 domain-containing protein	NA	NA	NA	NA
WP_009902052.1\|1093789_1093945_+	lipoprotein	NA	NA	NA	NA
WP_009902063.1\|1094609_1095170_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
1094691:1094707	attR	NA	NA	NA	NA
WP_009902065.1\|1095656_1096004_+	hypothetical protein	NA	NA	NA	NA
WP_009902068.1\|1096224_1096779_+	YaeQ family protein	NA	NA	NA	NA
WP_009902070.1\|1096906_1097323_-	lactoylglutathione lyase	NA	NA	NA	NA
WP_009902073.1\|1097725_1098820_+	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	1.0e-19	38.1
WP_019256023.1\|1098816_1099758_+	3-methyladenine DNA glycosylase 2	NA	NA	NA	NA
WP_009902082.1\|1099907_1101521_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_009902084.1\|1101536_1102985_-	RNA polymerase sigma factor RpoD/SigA	A0A2I7SAT0	Vibrio_phage	3.4e-31	34.4
WP_009902086.1\|1103227_1103776_-	hypothetical protein	NA	NA	NA	NA
WP_009902090.1\|1104569_1105151_-	periplasmic heavy metal sensor	NA	NA	NA	NA
WP_162486552.1\|1105307_1106153_+\|portal	phage portal protein	A4JWQ2	Burkholderia_virus	3.0e-133	85.1
WP_009902093.1\|1106225_1106510_-	hypothetical protein	NA	NA	NA	NA
WP_019254355.1\|1107194_1107677_-	hypothetical protein	NA	NA	NA	NA
WP_009902097.1\|1107783_1109817_-	hypothetical protein	NA	NA	NA	NA
WP_009902099.1\|1110458_1110959_+	hypothetical protein	NA	NA	NA	NA
WP_009902101.1\|1111316_1112363_+	HNH endonuclease	NA	NA	NA	NA
WP_144410528.1\|1112496_1113021_+	hypothetical protein	NA	NA	NA	NA
WP_144410512.1\|1114128_1115248_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.8e-49	39.9
WP_045143286.1\|1115551_1115884_+	hypothetical protein	NA	NA	NA	NA
WP_009893658.1\|1116376_1116781_+	PaaI family thioesterase	NA	NA	NA	NA
WP_009902108.1\|1116819_1117689_+	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_009902110.1\|1117808_1118825_-	D-2-hydroxyacid dehydrogenase family protein	NA	NA	NA	NA
WP_009893648.1\|1119262_1120318_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009902112.1\|1120546_1123156_-	DNA topoisomerase III	A0A2P1ELA0	Moumouvirus	3.8e-17	25.6
WP_009902114.1\|1123365_1123737_-	thioredoxin family protein	NA	NA	NA	NA
WP_009902115.1\|1123797_1124985_-	DNA-protecting protein DprA	S6BFL3	Thermus_phage	2.3e-22	39.2
WP_009893641.1\|1125217_1125721_+	peptide deformylase	A0A067XQZ3	Caulobacter_phage	3.2e-13	31.5
WP_009902117.1\|1125752_1126739_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	3.9e-07	36.5
WP_009893639.1\|1126859_1127495_+	LysE family translocator	NA	NA	NA	NA
WP_009902119.1\|1127603_1128461_+\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA

DBSCAN-SWA_5

1854465 : 1865346

Streptococcus_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009903323.1\|1854465_1856580_-	elongation factor G	E4ZFJ7	Streptococcus_phage	2.3e-57	27.0
WP_019256450.1\|1856845_1857355_-	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	5.0e-14	42.2
WP_080555088.1\|1857550_1857766_-	hypothetical protein	NA	NA	NA	NA
WP_009892615.1\|1858026_1858605_-	pseudouridine synthase	NA	NA	NA	NA
WP_009903329.1\|1858869_1860129_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	6.8e-12	63.0
WP_039337770.1\|1860293_1861889_+	multicopper oxidase family protein	NA	NA	NA	NA
WP_004196460.1\|1862000_1862204_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_009892611.1\|1862734_1863049_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	2.6e-13	44.6
WP_025405293.1\|1863045_1865346_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.6e-168	41.9

DBSCAN-SWA_6

1992215 : 2050902

Bacillus_virus(18.18%)

protease,transposase,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011401892.1\|1992215_1992734_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_029227331.1\|1993128_1994139_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_009903493.1\|1994245_1995061_-	transcriptional regulator	NA	NA	NA	NA
WP_009903496.1\|1995248_1996004_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_009903498.1\|1996272_1999257_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
WP_039337803.1\|1999575_2000565_+	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_009903508.1\|2000564_2002544_+	fused uroporphyrinogen-III synthase HemD/membrane protein HemX	NA	NA	NA	NA
WP_009903510.1\|2002548_2003739_+	heme biosynthesis protein HemY	NA	NA	NA	NA
WP_009903511.1\|2003871_2005179_-	MFS transporter	NA	NA	NA	NA
WP_009903513.1\|2005216_2005975_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_019254930.1\|2006065_2007505_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_009892455.1\|2007665_2008193_+	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	5.3e-51	53.2
WP_009903525.1\|2008352_2008850_-	GIY-YIG nuclease family protein	W8W2G4	Invertebrate_iridovirus	8.0e-09	45.8
WP_127447052.1\|2008946_2010533_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_162486542.1\|2010445_2010670_-	hypothetical protein	NA	NA	NA	NA
WP_009903529.1\|2011068_2012247_-	N-acetyltransferase	NA	NA	NA	NA
WP_009903531.1\|2012393_2014079_+	NAD+ synthase	A0A2L0UZF5	Agrobacterium_phage	1.0e-92	37.8
WP_004193987.1\|2014139_2014478_+	P-II family nitrogen regulator	NA	NA	NA	NA
WP_009892446.1\|2014734_2015823_-	porin	NA	NA	NA	NA
WP_009903535.1\|2016436_2017417_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009892444.1\|2017508_2018006_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_039337815.1\|2018076_2018856_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-16	30.8
WP_009907008.1\|2018878_2019592_-	ABC transporter permease	NA	NA	NA	NA
WP_009892440.1\|2019588_2020278_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_009903541.1\|2020488_2021265_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009903542.1\|2021647_2022346_+	pirin family protein	NA	NA	NA	NA
WP_009892437.1\|2022568_2023114_-	periplasmic heavy metal sensor	NA	NA	NA	NA
WP_009892436.1\|2023356_2024082_+	response regulator	W8CYM9	Bacillus_phage	1.9e-30	35.4
WP_009903549.1\|2024065_2025379_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_009892434.1\|2025442_2025709_-	hypothetical protein	NA	NA	NA	NA
WP_009892433.1\|2026203_2027961_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_009903552.1\|2028014_2029355_+	nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.3e-32	37.7
WP_025405256.1\|2029539_2030046_-	hypothetical protein	NA	NA	NA	NA
WP_025405255.1\|2030042_2030594_-	hypothetical protein	NA	NA	NA	NA
WP_009892428.1\|2030881_2031079_+	hypothetical protein	NA	NA	NA	NA
WP_009903562.1\|2031210_2032629_+	alpha,alpha-trehalose-phosphate synthase (UDP-forming)	NA	NA	NA	NA
WP_009903564.1\|2032621_2033215_+	AAA family ATPase	A0A219VHB7	Ochrobactrum_phage	7.3e-25	60.5
WP_009903568.1\|2033377_2033989_-	membrane protein	NA	NA	NA	NA
WP_009903571.1\|2034532_2035906_-	MFS transporter	NA	NA	NA	NA
WP_009903573.1\|2036024_2036528_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_009903574.1\|2036738_2037119_-	DUF5594 family protein	NA	NA	NA	NA
WP_009892420.1\|2037277_2037649_+	hypothetical protein	NA	NA	NA	NA
WP_009903575.1\|2038164_2038545_-	hypothetical protein	NA	NA	NA	NA
WP_019254695.1\|2038716_2039256_+\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_019254694.1\|2039355_2040507_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_025405253.1\|2040697_2040922_-	hypothetical protein	NA	NA	NA	NA
WP_025405252.1\|2042511_2042997_+	hypothetical protein	NA	NA	NA	NA
WP_080940519.1\|2043351_2044005_+	hypothetical protein	NA	NA	NA	NA
WP_144410514.1\|2044021_2045255_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	2.4e-102	65.9
WP_080558216.1\|2045271_2045757_+	hypothetical protein	NA	NA	NA	NA
WP_144410533.1\|2045751_2046309_-	sce7726 family protein	A0A2K9VCS3	Lactobacillus_phage	7.9e-05	30.9
WP_144410534.1\|2046500_2047587_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	9.9e-44	36.8
WP_009906756.1\|2048527_2049373_-	hypothetical protein	NA	NA	NA	NA
WP_144410526.1\|2049665_2050902_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	9.9e-157	95.1

DBSCAN-SWA_7

2123149 : 2171885

Pseudomonas_phage(30.77%)

head,tail,transposase,tRNA,portal,integrase,terminase,capsid

attL 2153873:2153899|attR 2172058:2172084

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009903714.1\|2123149_2124043_-\|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	NA	NA	NA	NA
WP_009903716.1\|2124085_2124976_-	sulfurtransferase	NA	NA	NA	NA
WP_039337842.1\|2125300_2128825_+	DNA polymerase III subunit alpha	A0A291AVG1	Streptomyces_phage	6.0e-183	36.0
WP_009892328.1\|2128862_2130653_+	lipid A export permease/ATP-binding protein MsbA	W8CYL7	Bacillus_phage	6.8e-50	28.3
WP_009903733.1\|2130706_2131798_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_009903737.1\|2132114_2133257_+	glycosyltransferase family 9 protein	NA	NA	NA	NA
WP_009903739.1\|2133256_2134555_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_025405191.1\|2134551_2135799_+	glycosyltransferase	NA	NA	NA	NA
WP_009903742.1\|2135885_2137061_+	putative lipopolysaccharide heptosyltransferase III	NA	NA	NA	NA
WP_009892318.1\|2137332_2138097_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_009892315.1\|2138537_2138921_+	hypothetical protein	NA	NA	NA	NA
WP_009903745.1\|2139161_2139719_-	FUSC family protein	NA	NA	NA	NA
WP_009903746.1\|2140005_2141268_-	MFS transporter	NA	NA	NA	NA
WP_025405189.1\|2141264_2142254_-	photosystem reaction center subunit H	NA	NA	NA	NA
WP_009903749.1\|2142839_2143292_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_009903751.1\|2143754_2144648_-	RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_039337845.1\|2145992_2147246_+	MFS transporter	NA	NA	NA	NA
WP_009903765.1\|2147312_2147777_-	lipocalin-like domain-containing protein	NA	NA	NA	NA
WP_009903767.1\|2147868_2148198_-	cold-shock protein	NA	NA	NA	NA
WP_009892299.1\|2148715_2149009_-	hypothetical protein	NA	NA	NA	NA
WP_039337846.1\|2149365_2149635_+	hypothetical protein	NA	NA	NA	NA
WP_019255668.1\|2149941_2150655_+	phospholipase C accessory protein PlcR	NA	NA	NA	NA
WP_025369481.1\|2150726_2152103_+	hypothetical protein	NA	NA	NA	NA
WP_009903769.1\|2152271_2153660_-	purine permease	H9YQ34	environmental_Halophage	1.1e-26	52.4
2153873:2153899	attL	NA	NA	NA	NA
WP_009903778.1\|2154376_2154829_-	hypothetical protein	NA	NA	NA	NA
WP_144410538.1\|2155063_2155552_+	hypothetical protein	NA	NA	NA	NA
WP_144410539.1\|2155615_2156233_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_009903782.1\|2156238_2156499_-	hypothetical protein	I6NSR8	Burkholderia_phage	4.2e-25	73.2
WP_009903783.1\|2156639_2157215_+	SocA family protein	NA	NA	NA	NA
WP_009903786.1\|2158342_2158660_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_039337850.1\|2158649_2159939_-\|portal	phage portal protein	F8TVA0	EBPR_siphovirus	2.2e-90	45.9
WP_039337852.1\|2159938_2160118_-	hypothetical protein	NA	NA	NA	NA
WP_045143274.1\|2160130_2162023_-\|capsid	phage major capsid protein	S4TNE3	Salmonella_phage	5.2e-133	44.9
WP_009906764.1\|2162079_2163600_-\|terminase	terminase	B5WZR8	Pseudomonas_phage	1.1e-229	79.2
WP_009906765.1\|2163581_2164022_-	hypothetical protein	A0A286S1P9	Klebsiella_phage	1.2e-40	60.4
WP_029227453.1\|2164123_2164375_-	HNH endonuclease	NA	NA	NA	NA
WP_085955234.1\|2164902_2166112_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	9.2e-99	63.4
WP_009903789.1\|2166765_2167314_-	hypothetical protein	NA	NA	NA	NA
WP_009903790.1\|2167313_2167541_-	hypothetical protein	NA	NA	NA	NA
WP_009903792.1\|2167537_2167774_-	hypothetical protein	NA	NA	NA	NA
WP_009903794.1\|2167766_2168045_-	hypothetical protein	Q3HQY6	Burkholderia_phage	6.7e-21	67.1
WP_009903795.1\|2168037_2168289_-	hypothetical protein	NA	NA	NA	NA
WP_009903797.1\|2168281_2168476_-	hypothetical protein	A0A1W6JTA7	Pseudomonas_phage	6.1e-05	49.0
WP_080558124.1\|2168468_2168654_-	hypothetical protein	NA	NA	NA	NA
WP_009903800.1\|2168947_2169235_-	hypothetical protein	A0A1B0VRK7	Pseudomonas_phage	3.7e-06	47.9
WP_009903802.1\|2169314_2169545_-	transcriptional regulator	NA	NA	NA	NA
WP_144410540.1\|2169793_2170552_-	hypothetical protein	NA	NA	NA	NA
WP_029227343.1\|2170643_2171885_-\|integrase	site-specific integrase	Q6J1Q2	Burkholderia_virus	1.0e-81	45.1
2172058:2172084	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2435760 : 2564810

100

Burkholderia_virus(19.23%)

plate,transposase,tRNA,integrase,coat

attL 2435706:2435753|attR 2449238:2449285

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2435706:2435753	attL	NA	NA	NA	NA
WP_029227432.1\|2435760_2436855_-\|integrase	site-specific integrase	K7PKD7	Enterobacteria_phage	2.6e-60	36.9
WP_009905983.1\|2437370_2437910_-	hypothetical protein	A0A127KN88	Pseudomonas_phage	7.1e-11	66.7
WP_038711425.1\|2438865_2439171_+	hypothetical protein	NA	NA	NA	NA
WP_080558189.1\|2440547_2441144_+	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_144410542.1\|2442490_2442691_+	hypothetical protein	NA	NA	NA	NA
WP_144410526.1\|2442890_2444128_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	9.9e-157	95.1
WP_080940521.1\|2444140_2445175_-	acyltransferase	A0A166XZF2	Gordonia_phage	5.8e-17	31.2
WP_099975745.1\|2445240_2445978_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_009905961.1\|2445980_2446265_-	hypothetical protein	NA	NA	NA	NA
WP_009905959.1\|2446443_2446626_+	hypothetical protein	NA	NA	NA	NA
WP_029227429.1\|2446618_2447116_+	lysozyme	Q3HQU9	Burkholderia_phage	1.3e-83	93.3
WP_009905952.1\|2447112_2447658_+	hypothetical protein	NA	NA	NA	NA
WP_009905951.1\|2447654_2448134_+	DUF2514 family protein	Q6J1Q4	Burkholderia_virus	2.0e-57	81.3
WP_144410543.1\|2448103_2448367_-	hypothetical protein	NA	NA	NA	NA
WP_009905950.1\|2448448_2449093_+	DUF159 family protein	C7BGE4	Burkholderia_phage	1.6e-113	89.5
WP_025405127.1\|2450937_2451843_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	4.9e-129	75.1
2449238:2449285	attR	NA	NA	NA	NA
WP_009905947.1\|2451975_2453262_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.7e-172	72.0
WP_009905946.1\|2453578_2453914_+	H-NS histone family protein	NA	NA	NA	NA
WP_009905945.1\|2454217_2455696_-	PHB depolymerase family esterase	NA	NA	NA	NA
WP_009910381.1\|2456456_2456675_-	hypothetical protein	NA	NA	NA	NA
WP_009905942.1\|2458166_2460017_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_025405123.1\|2460045_2461473_-	hypothetical protein	NA	NA	NA	NA
WP_009891791.1\|2461496_2461763_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_009905937.1\|2462288_2465087_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.0e-27	24.1
WP_009905935.1\|2465089_2465923_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_025987447.1\|2466059_2466617_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_009906995.1\|2466613_2467213_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_009906968.1\|2467700_2468300_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_009906969.1\|2468296_2470702_+	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_039338284.1\|2470808_2471387_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_025405119.1\|2472747_2476083_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_009906870.1\|2476060_2476555_+	hypothetical protein	NA	NA	NA	NA
WP_038708366.1\|2477313_2477805_+	hypothetical protein	NA	NA	NA	NA
WP_085955234.1\|2477919_2479129_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	9.2e-99	63.4
WP_009905926.1\|2480170_2480503_+	hypothetical protein	NA	NA	NA	NA
WP_009905925.1\|2480520_2480826_+	hypothetical protein	NA	NA	NA	NA
WP_009905924.1\|2480838_2483661_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.5e-30	24.7
WP_009905923.1\|2483664_2484681_+	hypothetical protein	NA	NA	NA	NA
WP_019255073.1\|2484683_2487707_+	hypothetical protein	NA	NA	NA	NA
WP_050807625.1\|2487988_2488435_+	hypothetical protein	NA	NA	NA	NA
WP_144410544.1\|2489386_2490506_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	5.2e-48	39.5
WP_155772931.1\|2490813_2491533_+	hypothetical protein	NA	NA	NA	NA
WP_144410514.1\|2491598_2492833_-\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	2.4e-102	65.9
WP_085952127.1\|2492912_2494150_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	5.8e-157	95.1
WP_144410546.1\|2494222_2495276_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.5e-44	37.2
WP_009891742.1\|2496263_2496527_+	hypothetical protein	NA	NA	NA	NA
WP_009891740.1\|2496726_2497008_-	H-NS histone family protein	NA	NA	NA	NA
WP_009905907.1\|2497493_2498420_-	amidohydrolase family protein	NA	NA	NA	NA
WP_038708373.1\|2498464_2499754_-	MFS transporter	NA	NA	NA	NA
WP_009891734.1\|2500169_2501063_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_019255106.1\|2501871_2502417_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_009905900.1\|2502469_2503030_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_038708375.1\|2503112_2503637_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_009905896.1\|2503654_2504494_+	molecular chaperone	NA	NA	NA	NA
WP_039337972.1\|2504538_2506950_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_009905886.1\|2506965_2507931_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_025987396.1\|2508341_2510414_+	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	1.2e-29	28.0
WP_009891722.1\|2510414_2511047_+	response regulator transcription factor	NA	NA	NA	NA
WP_009905880.1\|2511756_2512599_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_009905879.1\|2512616_2513810_-	trans-2-enoyl-CoA reductase family protein	NA	NA	NA	NA
WP_009905877.1\|2514034_2515618_-	acid phosphatase	NA	NA	NA	NA
WP_009905875.1\|2515851_2517279_+	cytochrome-c peroxidase	NA	NA	NA	NA
WP_009905874.1\|2517324_2518185_-	M15 family metallopeptidase	NA	NA	NA	NA
WP_009905872.1\|2518181_2518361_-	hypothetical protein	NA	NA	NA	NA
WP_009905871.1\|2518286_2520386_+	glycoside hydrolase family 3 protein	NA	NA	NA	NA
WP_009905870.1\|2520672_2521059_+	hypothetical protein	NA	NA	NA	NA
WP_009905869.1\|2521077_2521554_+	NUDIX hydrolase	A0A2I6PFL2	Proteus_phage	2.0e-20	41.3
WP_009891706.1\|2521839_2523549_-\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	2.8e-186	56.9
WP_038709125.1\|2523829_2524039_+	ornithine acetyltransferase	NA	NA	NA	NA
WP_009905865.1\|2524568_2525375_-	hypothetical protein	NA	NA	NA	NA
WP_009905864.1\|2525468_2526689_-	CoA transferase	NA	NA	NA	NA
WP_009905863.1\|2527131_2529756_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	7.1e-80	39.2
WP_009905862.1\|2530184_2531150_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_080940522.1\|2531234_2532833_+	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA
WP_025405102.1\|2533384_2534923_+	PDZ domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	5.0e-09	24.8
WP_009905853.1\|2535387_2535942_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_009891685.1\|2536034_2536370_-	YbjQ family protein	NA	NA	NA	NA
WP_009891683.1\|2536559_2537708_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_019255838.1\|2537967_2538417_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_009905849.1\|2538421_2539357_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_025405101.1\|2539349_2541587_+	branched-chain amino acid ABC transporter ATP-binding protein/permease	A0A2R8FFL6	Cedratvirus	1.2e-08	27.5
WP_009891678.1\|2541583_2542288_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.7e-09	31.8
WP_009905842.1\|2542352_2543156_-	5-deoxy-glucuronate isomerase	NA	NA	NA	NA
WP_009905840.1\|2543155_2544076_-	myo-inosose-2 dehydratase	NA	NA	NA	NA
WP_045143295.1\|2544072_2546076_-	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)	NA	NA	NA	NA
WP_025405099.1\|2546086_2548087_-	5-dehydro-2-deoxygluconokinase	NA	NA	NA	NA
WP_009891669.1\|2548100_2548901_-	sugar ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-14	29.4
WP_009891668.1\|2548913_2550059_-	ABC transporter permease	NA	NA	NA	NA
WP_009891666.1\|2550159_2551209_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009905831.1\|2551458_2552340_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_009905830.1\|2552332_2553352_+	inositol 2-dehydrogenase	NA	NA	NA	NA
WP_025405098.1\|2553364_2554402_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_004193727.1\|2554563_2554794_+	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_009905819.1\|2555051_2555438_+	hypothetical protein	NA	NA	NA	NA
WP_004193573.1\|2555728_2556433_+	response regulator transcription factor	NA	NA	NA	NA
WP_009891653.1\|2556429_2557794_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_009891650.1\|2557804_2560198_+	CHASE2 domain-containing protein	NA	NA	NA	NA
WP_009905817.1\|2560289_2560895_+	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_009891646.1\|2560971_2561856_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.1e-69	48.3
WP_009905815.1\|2561942_2564810_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	6.7e-148	39.3

DBSCAN-SWA_9

3672998 : 3681749

Tanapox_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009904406.1\|3672998_3673910_+	alpha/beta hydrolase	A7XCB7	Tanapox_virus	9.2e-19	26.8
WP_009889864.1\|3674279_3675203_-	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	3.2e-43	36.2
WP_009889862.1\|3675381_3676623_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_009904404.1\|3676717_3677620_-	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	4.3e-53	39.9
WP_009889858.1\|3677954_3678272_-	competence protein ComE	NA	NA	NA	NA
WP_009904403.1\|3678343_3679336_-	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	9.1e-28	30.9
WP_009889854.1\|3679393_3680380_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	6.7e-15	27.9
WP_009904402.1\|3680348_3681749_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.4e-79	38.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP008915

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP008914

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection