CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010323	Bordetella pertussis 137 chromosome, complete genome	5 crisprs	cas3,DinG,DEDDh,csa3	0	0	23	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010323_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010323_1

924648-924742

Orphan

Consensus_repeat	Method
TAAAAGGGCACCCGCAAGGGTGTCCTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010323_1

>merge|NZ_CP010323|1|924648-924742|CRISPRCasFinder
TAAAAGGGCACCCGCAAGGGTGTCCTTTTATTGCGAAAAGATATCTGGAAGAAAGCCTTTTCAGAGTAAAAGGGCACCCGCAAGGGTGCCTTTTT

>NZ_CP010323|1|1|924648-924742|CRISPRCasFinder
TAAAAGGGCACCCGCAAGGGTGTCCTTTT	ATTGCGAAAAGATATCTGGAAGAAAGCCTTTTCAGAG
TAAAAGGGCACCCGCAAGGGTGCCTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010323.1\|WP_010930111.1\|910128_911058_+\|electron-transfer-flavoprotein-subunit-alpha	unknown	unknown	gnl\|CDD\|224936
NZ_CP010323.1\|WP_010930121.1\|932470_935650_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335
NZ_CP010323.1\|WP_010930123.1\|937098_937350_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NZ_CP010323.1\|WP_010930124.1\|937495_938110_-\|SCO-family-protein	unknown	unknown	gnl\|CDD\|239266
NZ_CP010323.1\|WP_003813314.1\|924791_925517_+\|CoA-pyrophosphatase	unknown	unknown	gnl\|CDD\|239518
NZ_CP010323.1\|WP_010930118.1\|925618_926668_+\|NADP(H)-dependent-aldo-keto-reductase	unknown	unknown	gnl\|CDD\|381320
NZ_CP010323.1\|WP_010930119.1\|929962_930694_+\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP010323.1\|WP_023852693.1\|921206_922481_+\|PA0069-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
NZ_CP010323.1\|WP_014905652.1\|923022_923895_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|274527
NZ_CP010323.1\|WP_010929632.1\|926805_927822_-\|IS110-like-element-IS1663-family-transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP010323.1\|WP_003813315.1\|924200_924581_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_CP010323.1\|WP_023852686.1\|922634_923015_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010323.1\|WP_010930125.1\|938296_940357_-\|M3-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341051
NZ_CP010323.1\|WP_003821528.1\|914041_915076_+\|sulfate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224529
NZ_CP010323.1\|WP_010926548.1\|929330_929903_-\|chorismate-lyase	unknown	unknown	gnl\|CDD\|225703
NZ_CP010323.1\|WP_029443805.1\|930745_931663_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP010323.1\|WP_010930112.1\|916948_918013_+\|sulfate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213263
NZ_CP010323.1\|WP_010930113.1\|918810_919719_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP010323.1\|WP_003821527.1\|911301_913128_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173842
NZ_CP010323.1\|WP_003813333.1\|913210_913852_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239314

Protein	Function_ID	Function_description	E-value
NZ_CP010323.1\|WP_010930121.1\|932470_935650_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
NZ_CP010323.1\|WP_010930123.1\|937098_937350_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	2.42408e-12
NZ_CP010323.1\|WP_010930124.1\|937495_938110_-\|SCO-family-protein	gnl\|CDD\|239266	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II.	2.62796e-54
NZ_CP010323.1\|WP_003813315.1\|924200_924581_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	1.34063e-62
NZ_CP010323.1\|WP_010930118.1\|925618_926668_+\|NADP(H)-dependent-aldo-keto-reductase	gnl\|CDD\|381320	cd19094, AKR_Tas-like, Escherichia coli Tas protein and similar proteins. Escherichia coli Tas protein is the prototype of this family. It is an NADP(H)-dependent aldo-keto reductase that catalyzes the reversible reduction of ketones to the respective alcohols using NADP(H) as a hydride donor.	0
NZ_CP010323.1\|WP_010930119.1\|929962_930694_+\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	7.73356e-72
NZ_CP010323.1\|WP_023852693.1\|921206_922481_+\|PA0069-family-radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	4.71758e-24
NZ_CP010323.1\|WP_014905652.1\|923022_923895_-\|EamA-family-transporter	gnl\|CDD\|274527	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.	3.74356e-26
NZ_CP010323.1\|WP_010929632.1\|926805_927822_-\|IS110-like-element-IS1663-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	2.74666e-23
NZ_CP010323.1\|WP_003813314.1\|924791_925517_+\|CoA-pyrophosphatase	gnl\|CDD\|239518	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.	5.50907e-72
NZ_CP010323.1\|WP_010930125.1\|938296_940357_-\|M3-family-metallopeptidase	gnl\|CDD\|341051	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP). Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70). DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from Escherichia coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). OpdA may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala. This family also includes Arabidopsis thaliana organellar oligopeptidase OOP (At5g65620), which plays a role in targeting peptide degradation in mitochondria and chloroplasts; it degrades peptide substrates that are between 8 to 23 amino acid residues, and shows a weak preference for hydrophobic residues (F/L) at the P1 position.	0
NZ_CP010323.1\|WP_010930111.1\|910128_911058_+\|electron-transfer-flavoprotein-subunit-alpha	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	1.05379e-120
NZ_CP010323.1\|WP_010926548.1\|929330_929903_-\|chorismate-lyase	gnl\|CDD\|225703	COG3161, UbiC, 4-hydroxybenzoate synthetase (chorismate lyase) [Coenzyme metabolism].	1.05194e-17
NZ_CP010323.1\|WP_029443805.1\|930745_931663_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.56316e-67
NZ_CP010323.1\|WP_010930112.1\|916948_918013_+\|sulfate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213263	cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter. Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	3.07125e-165
NZ_CP010323.1\|WP_003813333.1\|913210_913852_+\|peroxiredoxin	gnl\|CDD\|239314	cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes and lung. The seed-specific plant 1-cys PRXs protect tissues from reactive oxygen species during desiccation and are also called rehydrins.	3.35179e-132
NZ_CP010323.1\|WP_010930113.1\|918810_919719_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP010323.1\|WP_003821527.1\|911301_913128_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173842	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	6.94362e-153
NZ_CP010323.1\|WP_003821528.1\|914041_915076_+\|sulfate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224529	COG1613, Sbp, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism].	0

>NZ_CP010323.1|WP_003813315.1|924200_924581_+|50S-ribosomal-protein-L19
MNLIAILEQEEIARLTGGNAVTEFAPGDTVVVSVNVVEGTRKRVQAFEGVVIAKRNRGLNSSFIVRKISSGEAVERTFQLYSPQIAGIEVKRRGDVRRAKLYYLRSRSGKSARIKEKLVLKKAKSA
>NZ_CP010323.1|WP_014905652.1|923022_923895_-|EamA-family-transporter
MSYTSLILVVLAAMAHAAWNLLAKRAAMVGPMFVFAYGLAATILYAPWVIWVLAHDGMVWSWPVVLCILASSMLHLGYSLCLQRGYQVADLSVVYPIARGTGPLLSTMGAFTLLSEPATTTGIAGMLCVVGGVLLIATQGRLGMFRQAQAWIGVRWGVVIGLFIAAYTVVDAYGVKILLIMPVLFDWFTCATRTLMMTPHVLRRRAQYWPAMRGYWHLAIAVGVLSPLGYILVLYALRNGAPLSLVAPAREMSMMLGTLAGMFLLREKVGIGRLAGCLAILAGVVLLGSS
>NZ_CP010323.1|WP_023852686.1|922634_923015_+|hypothetical-protein
MTIATTLDAATSLPTAVPGRTLGALRRLARAWAGAAVPQRKWPFPPTPPGQAQPCTPCTDSQPRSVQAVQPAQARALHAQAELSGAATQAATQVLSTKAKIIDVLLVAVWGAMIPALMWLGAAGGF
>NZ_CP010323.1|WP_023852693.1|921206_922481_+|PA0069-family-radical-SAM-protein
MASTEHSFSAGFGSPAAAPAALRGRGAVTNVPHRFQQADRVRVDDGWANPDYTAGSDAAALPSVAEALGQGGRRAIPIAVEGADASPNTCAQAPAPRTIVQAEEARKMLSRNDSPDIPFDVAANPYRGCEHGCVYCYARPTHAYLGYSPGLDFETRLVAKANAVAALRAELARPGYRASPINIGSATDAYQPIERTWRLTRGMLELLLQTRHPLTVVTKNALVERDLDLLQDLARQKLVTVFVSITTLDAAMARTLEPRASAPYRRLQTVRTLAQAGVPVGVLVAPVIPFINDESLEHILQEASAAGACYASYTVLRLPWEVKEVFETWLQAHFPDRAQRVLHRIEDLRNGRRNDTAFGSRMRGTGIWADLLRQRFALATRKLDLNRHRPELDTHRFVPPLEPGLPPARGRREARAQPGQLALF
>NZ_CP010323.1|WP_010930113.1|918810_919719_+|sulfate-adenylyltransferase-subunit-CysD
MSAVMTRSHLDWLESEAIFILREVAAECARPALLFSGGKDSVVLLRLAEKAFRPGRFPFPLLHIDTGHNYDEVISFRDARAAELGETLLVRSVEDSIARGSVALRRETDSRNAAQAVTLLEAIEELGLDACIGGARRDEEKARAKERIFSFRDEFGQWDPKAQRPELWNLFNTRVHRGENMWVFPISNWTELDVWQYIQRERLALPSIYYSHTREVVRRKGLLVPVTRLTPPAEGETVEQLAVRFRTVGDISCTCPVASDAADPAAIIAETAVTDITERGATRMDDQTSEASMERRKREGYF
>NZ_CP010323.1|WP_010930112.1|916948_918013_+|sulfate-ABC-transporter-ATP-binding-protein
MSIEVRGLSKRFGAFRALDEVSLHIETGELVALLGPSGCGKTTLLRIIAGLESADAGSVLFAGEDATEVDVRQRQVGFVFQHYALFKHMTVFENVAFGLRVRHRSQRPSEARIRAKVLDLLGLVQLDWLADRYPAQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHVASVFVTHDQEEALEVTDRVVLMNAGRIEQVGSPREVWERPATPFVYGFLGDVNQLHGHATRGVWRLGEVALPAPDLPEADNQRAIAYVRPHDIDLARAGTAAPGIPVRLNHVYLAGPSAYLELARQDDQAIIEAQVPEPLFRSLGLKEGEALLAQPRRARVFAVQP
>NZ_CP010323.1|WP_003821528.1|914041_915076_+|sulfate-ABC-transporter-substrate-binding-protein
MPRNTAGIRGAIVALATVFSLGLPWAVQAQDKQTLLNVSYDPTRELYRAVDEAFIKEYQARAGVDLTVRQSHGGSGRQARSVIDGLDADVVTLALAYDIDAIADRGLLPQDWQKRLPRNSSPYTSTIVFLVRKGNPRQIHDWDDLVKDGVQVITPNPKTSGGARWNYLAAWAYALARNEGSEAKAREFVGQLLSHVPVLDTGARGSTTTFVERGVGDVLLAWENEAFLAREELGPDKFDIVVPSLSILAEPPVAVVDKVVDRKGTRAAAQAYLEYLYTPAAQEIIARNFYRPTDAGVAAKYASRFPKLKLVTIDDPIFGGWRKAQKDHFSDGGTFDQVYQPQRK
>NZ_CP010323.1|WP_003813333.1|913210_913852_+|peroxiredoxin
MGQLRLGDTAPDFEQKSSIGPLRLYDYLGDSWGVLFSHPADFTPVCTTELGYTAKLAGEFAKRNVKVLALSVDPVDSHTKWIDDINDTQSTTVNFPILADDDRKVSELYDMIHPNANATLTVRSVFVIDPAKKVRLTITYPASTGRNFDEILRVIDSLQLTDSHSVATPVNWKDGEDVIIVPSLKDEAVIKEKFPKGYKALRPYLRITPQPNK
>NZ_CP010323.1|WP_003821527.1|911301_913128_+|acyl-CoA-dehydrogenase
MTYATPLQDFRFALNELAGLEEILKLPGFEEVTPDLVDAILEENARFVQQAIAPLNVAGDTKPPVWNDGQVTTTPGFSQGFADYTAGGWQGLQHPQKWGGQGLPKVVAAPAGENIQAASLAFSLCPMLTDGVIEALLTVGSEAQRQTYVPKLIGGQWTGTMNLTEPQAGSDLAQVATRAVRQDDGSYRLSGQKIFITYGEHDLAENIIHLVLARTPDAPAGVKGISLFIVPKYLVNEDGSRGKRNDVWCASLEHKLGIHGSPTAVLLYGAGKGEVGEGAVGYLVGEANRGLEYMFIMMNAARYSVGQQGIGVSERAYQHAQAYARERVQGRAIEGSAAPVTIAHHPDVQRMLLTMRALTEAARAVSYVAAAAHDKGTHHPDAEVRARNRAFYEYLVPIVKGFSTESAVEVASLGIQVHGGMGFIEETGAAQHYRDARILPIYEGTTAIQANDLVGRKTLRDGGATAHASIAAMRDTLKAVAAEAQRADTADHTALRVLRDNFDQAIQSYEGAVEFILAHAASNVRAVYSSSVPYLMLAGVVHGGWQMARAALACRRHLAAGSGDAFHRHKLGTALFYGAHILPRALALAAAVRAGDVADSCGSMADIA
>NZ_CP010323.1|WP_010930111.1|910128_911058_+|electron-transfer-flavoprotein-subunit-alpha
MTTLVIAEHDNAQLKGATLNTIAAASRLGGEVHVLVAGSGAQAVAEQAAQAARVSKVLLADAPQLAEGLAENLAAQVLAVAGGYSHILFAATASGKNVAPRVAAKLDVAQISDIIGVESADTFQRPIYAGNAIATVQSGDAVKVITVRTTGFDAVAAQGGSAAVEALDAVADSGLSRFVGREVAKSDRPELAGARVVVSGGRGLGSAENFKILDPLADKLGAALGASRAAVDAGYAPNDWQVGQTGKIVAPQLYVAVGISGAIQHLAGMKDSKVIVAINKDPEAPIFGVADYGLVGDLFQVVPELTGAL
>NZ_CP010323.1|WP_003813314.1|924791_925517_+|CoA-pyrophosphatase
MSDSAPSRPRRTPVRPLFDPMAQPWETANQGLARVDERLLTPPELRSSLRPADHWRLDPLCAAEPRAPGREGSLVAAAVLIPLVMRADGVRVMLTQRAAHLHDHAGQVSFPGGRIEVSDATPVAAALREAQEETGLPVQQVEVLGSMPQYFTATGFAITPVVSLVQPDFELAPDAFEVAEVFEVPLSFLMDPANHRLYRAALPDGYVRQYYAMPWQRYFIWGATAGMLRNLYQTVREALPG
>NZ_CP010323.1|WP_010930118.1|925618_926668_+|NADP(H)-dependent-aldo-keto-reductase
MKYRKLGHTDLDVSLIGLGTMTWGEQNTEAQAHEQLDYALAHGINLVDAAEMYPVPPKPETQGRTESCIGSWLARTGRRHEVVLASKAAGPVRDAKRPSHIRDGKTFLDRKNLTQALDASLKRLQTDYLDLYQLHWPDRTTNTFGKLAYPWVDDAHTVPIEETLEVLQDFVRAGKVRHVGLSNETPWGVARFLQAAEKHGLPKVATIQNPYNLLNRIFEIGLAEFSHREGVGLLAYSPLAMGILSGKYLDGARPEGSRLALFTRFTRYSNPQAEAAARDYVMLARDHGLAPAQMALAWVNQRPFVSSNLMGATTLAQLKENIESVEVTLSDEVLQGIEAIHARQPNPAP
>NZ_CP010323.1|WP_010929632.1|926805_927822_-|IS110-like-element-IS1663-family-transposase
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELNRKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLCFGVLKNRIPYQPNYAMNG
>NZ_CP010323.1|WP_010926548.1|929330_929903_-|chorismate-lyase
MTTPIPLARGWLPAAPSTLDPLRKYWLFRPGALTAGLRQLGHVRLRVLAEYPTGAPRDEADGMRIAAQSPVWVREVLMSIDGVDSVVARSLTPLRASHGVWQGMRRLLTRPLADMLYHDPGIHRSVFVCRRLAAGVPFHATAIARAPAGGPEPALWARRSAFWRAGQPLLVAECFLPAFWSLARAPVAPR
>NZ_CP010323.1|WP_010930119.1|929962_930694_+|rRNA-pseudouridine-synthase
MEKVRISKLMSERGLCSRREADSYIERGWVRVDGVVVSELGARALPDQVITLERAAAARQTARVTILLHKPVGYVSGQAEKGYTPAVALIDARSRYAGDRAPQRFERGQLQGLAVAGRLDIDSQGLLVLTQDGRIAKKLIGEDSEVDKEYLVRVQGRLSEAGLALLNHGLSLDGKPLRPAQVRWQNADQLRFVLREGKKRQIRRMCELVGLRVVGLKRVRIGRVSLGDLPAGQWRYLRADERF
>NZ_CP010323.1|WP_029443805.1|930745_931663_-|LysR-family-transcriptional-regulator
MELFVEVARTLSFGRAAENLAIPKSTLSRQVAELERSVGLRLLSRTTRRVELTEAGQLYFERCQRIVAEARIAHEELQNLVETPSGPLRVNMPADFGTDFLSEAFTEFSRRYPEVTFYLDLASPEHAERVFQTCDVSIEIGDLPDSTHIARLLGVLPAHLYASPDYLARHGEPQHPDDLPRHECIQFRAGTGRVTRWPLNSGERHVEITPGNRFSVNSVSMVRNLATLGAGIAILAPMGNVREDIESGRLKRILPDWLAGPFPVYAVTDTRMLPAKTRIFVEFLMERLSNKTLAGQNNPAFLNLR
>NZ_CP010323.1|WP_010930121.1|932470_935650_+|efflux-RND-transporter-permease-subunit
MAKFFIDRPVFAWVIAIVLMMAGALSILSLPVAQYPNIAPPAISINVTYPGASAQTVQDTVVQVIEQQMNGIDNLQYISSESNSDGSMSITLTFSQGTNPDTAQVQVQNKLAVAQPLLPLEVQQQGIRVTKATKNFLIVAGFVSTDGTMDKSDLADYVASYIQDPISRTPGVGNFQLFGAPYAMRIWISPEKLVNFGLTASDVTTAIREQNVQVSSGQLGGQPAVRGQQLNATVIGPSRLQTPEAFGRILLKVNRDGSQVRLKDVASIELGAQTYAIDSYYNGKPASGLAIKLASGANALDTAQAVRETINGLKPYFPPGMDVVYPYDTTPFVSLSIEGVVKTLFEAVLLVFLVMYLFLQNVRATLIPTLAVPVVLLGTFGVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLSPRQATRKSMGQITGALIGIAMVLAAVFVPMAFFGGSTGVIYRQFSITIVSSMVLSVVVAIVFTPALCATMLKPIPKGHHGSKKGFFGWFNRTFERSSQAYANNVARSMGRTKRLLLIYVVILLGMAWMFMRIPTAFLPDEDQGILFAQVQAPAGATSERTQATIDAAVKYLLEDEKESVASVFAVNGFSFGGRGQNAAILFIKLRDWNERKGAEHRAAAVAARANAKFRAELRDAQAAVFAPPAVMELGNATGFDFQLQDRAGVGHEKLLAARNQLLQEAGASPMLVAVRPNGIEDAPQYQLDIDREKARALGVSITEINNTLATAWGSSYVNDFIDRGRVKKVFVQGEASSRMLPQDLDKWYVRNNAGDMVPFSAFSSAQWTFGPQKLNRYNGVPSYNIQGQAAPGYSSGDAMAEMERLADKLPLGIGYDWTGLSFEERLSGAQAPALYAISLIVVFLCLAALYESWSIPTAVMLVVPLGVVGALLATMTRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKEHYEEGASLTEAAVHAARQRLRPILMTSLAFILGVVPLAISTGAGSGSQNAIGTGVIGGMLTGTFLAIFFVPLFFVLTLRLFKVKRASENREDDDPHGGAQPATHGGQPQ
>NZ_CP010323.1|WP_010930123.1|937098_937350_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MNIIIMIIVGFVVGLITRAIMPGDQNMGYIMTTILGIIGSVVAGFLGQQLGWYAPGEPAGWIGSVVGAIIVLFVVGLVAKKRA
>NZ_CP010323.1|WP_010930124.1|937495_938110_-|SCO-family-protein
MYSPLSGRAWRGLLLAMLMLLAACSERSADWSLYNVKGHLPDLKFSLPGAHGKTVSSDDLKGKTVLLFFGYASCPDVCPTTMAQLTAVLQQLGEQARDVRILFVSVDPHRDTPDILQAYVNEFNSNAIGVTGNEKQIADLARRYRVAYQIEKPKPGDDADIYDVTHSRGVYIFDNQGKARLLASDTDTIDTMVKDLRQLIAQTQ
>NZ_CP010323.1|WP_010930125.1|938296_940357_-|M3-family-metallopeptidase
MTQNPLLAPVADLVDYAAVKPEHIVPAVQALVDIARAAVEHAADPALPATWDAVVAPLDSASERLWRAWSVAGHLNAVVNTPVLREAYNAALPLVTEFSTWVGLHEGLYRQYQRLQAAEDFAAWPPVRRRVVELALRDFRLSGVELQGAARERYAEISDREAQASQKFSENVLDAIDAWSLLVDDQARLDGIPADVLAAARKAAEDDGATGWKLTLKMPCYLPVMQYARDRALRETLYRAYGTVASEHGDAAYDNSPLIEELLQLRADEAGLLQYPTFAALRLQTRMARDATEVVDFLRDLARRAKPYAERDLAELQAFAAGELGLAELQPWDVPFAAERLRESRYAYSEDEIKQYFTEPRVLAGLFEVIETLFDVRLREVPVSSWHADVRGVRVESPDGATLGHLYLDLYARAGKQSGAWVDSERSRRRVQGDLQTPVAYLTCNFSRPNGDKAALLTHDDVITLFHETGHALHALLSEVDEPGAAAFASVEWDAIELPSQFMENFCWEWSVVQKLSAHVETGQPLPRDLYDRLVAARNFQSGMQTVRQIEFALFDMMLHDRPQGAPIADVLALLQQVRQEVAVLFPPAWHRLPHSFSHLFAGGYGAGYYSYKWAEVLSADAYEAFEEAARQGEPAATTLDGATGARFRKEILAVGGARPAADSFRAFRGREPRIDALLRHSGMQA

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Crispr_ID: NZ_CP010323_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010323_2

2071956-2072083

Orphan

Consensus_repeat	Method
AAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCATAGCGGGCGCAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010323_2

>merge|NZ_CP010323|2|2071956-2072083|CRISPRCasFinder
AAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCATAGCGGGCGCAGCGTGGGGGCACTACTTTGCCGCTGGGCCGCCCCAAGGCAAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCGTAGCGGGCGCAGCG

>NZ_CP010323|2|2|2071956-2072083|CRISPRCasFinder
AAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCATAGCGGGCGCAGCG	TGGGGGCACTACTTTGCCGCTGGGCCGCCCCAAGGC
AAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCGTAGCGGGCGCAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010323.1\|WP_019247934.1\|2068815_2069028_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP010323.1\|WP_010930565.1\|2066729_2067398_+\|3-oxoacid-CoA-transferase-subunit-A	unknown	unknown	gnl\|CDD\|131482
NZ_CP010323.1\|WP_003812458.1\|2079352_2079676_+\|iron-sulfur-cluster-assembly-protein-IscA	unknown	unknown	gnl\|CDD\|213674
NZ_CP010323.1\|WP_010930566.1\|2072106_2072757_-\|transcriptional-repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NZ_CP010323.1\|WP_003812478.1\|2067390_2068032_+\|CoA-transferase-subunit-B	unknown	unknown	gnl\|CDD\|188219
NZ_CP010323.1\|WP_010930568.1\|2074165_2076202_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NZ_CP010323.1\|WP_010930571.1\|2080320_2082183_+\|Fe-S-protein-assembly-chaperone-HscA	unknown	unknown	gnl\|CDD\|235360
NZ_CP010323.1\|WP_003812463.1\|2077161_2077674_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	unknown	unknown	gnl\|CDD\|273927
NZ_CP010323.1\|WP_010930561.1\|2060918_2061320_+\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239534
NZ_CP010323.1\|WP_010930567.1\|2072885_2074088_-\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NZ_CP010323.1\|WP_003812456.1\|2079678_2080191_+\|Fe-S-protein-assembly-co-chaperone-HscB	unknown	unknown	gnl\|CDD\|235133
NZ_CP010323.1\|WP_019248062.1\|2061333_2062137_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|223955
NZ_CP010323.1\|WP_003812460.1\|2078940_2079351_+\|Fe-S-cluster-assembly-scaffold-IscU	unknown	unknown	gnl\|CDD\|183087
NZ_CP010323.1\|WP_010930563.1\|2062561_2063719_+\|thiolase	unknown	unknown	gnl\|CDD\|180434
NZ_CP010323.1\|WP_003812491.1\|2062133_2062565_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224462
NZ_CP010323.1\|WP_010930569.1\|2076454_2076946_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|319971
NZ_CP010323.1\|WP_005012067.1\|2069598_2070549_+\|IS481-like-element-IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP010323.1\|WP_019248063.1\|2068066_2068798_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP010323.1\|WP_010930564.1\|2063740_2064517_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
NZ_CP010323.1\|WP_010930570.1\|2077691_2078903_+\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450

Protein	Function_ID	Function_description	E-value
NZ_CP010323.1\|WP_019247934.1\|2068815_2069028_+\|hypothetical-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	1.69368e-19
NZ_CP010323.1\|WP_010930565.1\|2066729_2067398_+\|3-oxoacid-CoA-transferase-subunit-A	gnl\|CDD\|131482	TIGR02429, 3-oxoadipate_CoA-transferase_subunit_A, 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.	1.07744e-141
NZ_CP010323.1\|WP_003812458.1\|2079352_2079676_+\|iron-sulfur-cluster-assembly-protein-IscA	gnl\|CDD\|213674	TIGR02011, Protein_yfhF., iron-sulfur cluster assembly protein IscA. This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	4.04388e-54
NZ_CP010323.1\|WP_010930566.1\|2072106_2072757_-\|transcriptional-repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	1.25833e-105
NZ_CP010323.1\|WP_003812478.1\|2067390_2068032_+\|CoA-transferase-subunit-B	gnl\|CDD\|188219	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144.	3.32577e-117
NZ_CP010323.1\|WP_010930568.1\|2074165_2076202_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP010323.1\|WP_010930571.1\|2080320_2082183_+\|Fe-S-protein-assembly-chaperone-HscA	gnl\|CDD\|235360	PRK05183, hscA, chaperone protein HscA; Provisional.	0
NZ_CP010323.1\|WP_003812463.1\|2077161_2077674_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	gnl\|CDD\|273927	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Regulatory functions, DNA interactions].	1.00126e-77
NZ_CP010323.1\|WP_010930561.1\|2060918_2061320_+\|MaoC-family-dehydratase	gnl\|CDD\|239534	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.	1.90882e-68
NZ_CP010323.1\|WP_010930567.1\|2072885_2074088_-\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_CP010323.1\|WP_003812456.1\|2079678_2080191_+\|Fe-S-protein-assembly-co-chaperone-HscB	gnl\|CDD\|235133	PRK03578, hscB, Fe-S protein assembly co-chaperone HscB.	2.55481e-79
NZ_CP010323.1\|WP_019248062.1\|2061333_2062137_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|223955	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism].	4.07846e-62
NZ_CP010323.1\|WP_003812460.1\|2078940_2079351_+\|Fe-S-cluster-assembly-scaffold-IscU	gnl\|CDD\|183087	PRK11325, PRK11325, scaffold protein; Provisional.	5.84746e-99
NZ_CP010323.1\|WP_010930563.1\|2062561_2063719_+\|thiolase	gnl\|CDD\|180434	PRK06158, PRK06158, thiolase; Provisional.	0
NZ_CP010323.1\|WP_003812491.1\|2062133_2062565_+\|hypothetical-protein	gnl\|CDD\|224462	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only].	1.42164e-21
NZ_CP010323.1\|WP_010930569.1\|2076454_2076946_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	1.04407e-74
NZ_CP010323.1\|WP_005012067.1\|2069598_2070549_+\|IS481-like-element-IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	8.66858e-23
NZ_CP010323.1\|WP_019248063.1\|2068066_2068798_+\|hypothetical-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	6.98498e-108
NZ_CP010323.1\|WP_010930564.1\|2063740_2064517_+\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	4.84544e-78
NZ_CP010323.1\|WP_010930570.1\|2077691_2078903_+\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0

>NZ_CP010323.1|WP_005012067.1|2069598_2070549_+|IS481-like-element-IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>NZ_CP010323.1|WP_019247934.1|2068815_2069028_+|hypothetical-protein
MGPAGIPADITAAWAKEIARVAALPDVSEKLATLGVESVSSTPQQFSAFVESEIRKWEKVVQDAHIPPVQ
>NZ_CP010323.1|WP_019248063.1|2068066_2068798_+|hypothetical-protein
MKTKIKIVTLALCAFSSAVFASSFPSKPINLIVPYPPGGAVDPIARLYAEKISQSWGVPVIVLNRPGAGTTIGLNQAARAEPDGYTVVLGTASITSNAPLYRSLPYDTLKDFTYLSMAGMIPLAITANPRTAVNSMDELVGQLKKKPGSLTYSSSGNGTIIHLGGELFKSLAGVDMVHVPYKGSGPSVMAGVAGEVDLTFDSVFLMDPQVKAGKLKYIAVASEKRLKSLPEVPAIGESILVIS
>NZ_CP010323.1|WP_003812478.1|2067390_2068032_+|CoA-transferase-subunit-B
MSKGWSNDEIAARIAVDLPEHAIVNLGIGLPILVANHIPEGKTIFFHSENGIIGLGPVPAPGQEDPDIVNAAKKHATLIAGASIVHHADSFSLIRGGRLDYSVLGGLQVSSGGDIANWKVPGQKGGGGVGGAMDLAVGARNVLVMMRHQDKTGASKLVKSCTFPLTAVSAVTRVYTELGIFECAGDAFIVRESAPGIGKDELLRKTEAALTFP
>NZ_CP010323.1|WP_010930565.1|2066729_2067398_+|3-oxoacid-CoA-transferase-subunit-A
MLNKTCESADEAVSVVESGATILISGFGDIGLPFELLHALARTSVKDLTIVSNNAGTGELGLSRLFRNRQVSRLIASFPSQPDSHHYFAAYQEGLVDLELVPQGTLAERIRAAGAGLAGFFTPTGYGTELAQGKECRMFKGKGYVFEEALPGDFAFIKAHVADAYGNFRYRRASRTFNPIMAMAARTTIAEAKQMVPVGSIDPDDVHTPGVFVDRIVEVRDE
>NZ_CP010323.1|WP_010930564.1|2063740_2064517_+|SDR-family-oxidoreductase
MQDKLLTLENRQVIVTGAGQGIGRALASAIAGLGGRVVAVDLNADALAALREALGHERCVTVAGNVADPSLAQQAVDAGVTAFGGVNGLVNNAGVTRTAMIDKMSISDWQQVIDVHLSGSFYFLQALGRHLLGRAKAGGDGAGAIVNISSDAGRRGTIGQINYGAAKAGVLGLTMCAAREWARYGIRTNTVGFGVVETPMTETIRGEKFRDTYLSQIPLGRWGEADEVVRPVCFLLSDADSYVTGQHLSVNGGYTIGL
>NZ_CP010323.1|WP_010930563.1|2062561_2063719_+|thiolase
MIQERFPRGKTAIVACATYGIGESPGLSSLDLAVRASVQALDSVGLTPADVDGLFIGLPDDFVSGLSFTEYLGISPRLTDNNRTGGSSFLTHAIHAALALEAGLCDVALIAYGSNQRSGAGKLVSSMRPSPYEGAYKLARPVGAYALAASRYAAQYGLQKEQLGAVALAARQWAQKNPEAYMRAPLTMDECLASRLVCDPFSVRDCCLVTDGAAAVVMVRADRARDLAARPAYLLGGAAAAWHKDITNMPDLTVTAASLSGPRAMAQAGVTPADIDVLELYDAFTLNTILFLEDLGFCAKGEGGAFVEDGRIAPGGALPVNTNGGGLSCVHPGMYGLFTMVEAAQQLAGAAGERQVAQARLALAHGNGGELSSQATLILGTEETI
>NZ_CP010323.1|WP_003812491.1|2062133_2062565_+|hypothetical-protein
MTEHPQAASALLPQQEYFAHLADGRFMIQRSRSSGEYVFYPRVAAPRTGAQDLEWVAASGRGTVYATTVMRVRPPAAPYNVCLVELEEGPRMMSRVEGIGPEDVQVGMAVRARIIRDDAGEPLVVFEPAGPSDAGIGQGRAAQ
>NZ_CP010323.1|WP_019248062.1|2061333_2062137_+|enoyl-CoA-hydratase/isomerase-family-protein
MIMSVLEISRVGACAVLTLNRPAARNALDMDLRNALAKALPEIRDDATVRAVVLTGAGGHFCAGGDIRAIAAGQGNADVFEGRNRILSMQRWFDGLVDLEKPVIAAVDGVAFGADLSLALAADFVLASPRATFCAVFARLGYVPDLGGMYLLPRAVGLARAKALAFSARVVGAPEALEMGIAHQLVDDRPVLDAALELAGRFEQAPAGALGIVKSVMNHAFESDRRTVYMQEALAQALCRESAFHQEAARRFLDKQAPLYQWPQEQQ
>NZ_CP010323.1|WP_010930561.1|2060918_2061320_+|MaoC-family-dehydratase
MGQPIVVDQSAIDTFGDVVHDRQWIHVDPVRAAAESPFGTTIAHGLLTLSLITGWYHQLFEFPGRKLALNYGFDKVRFPAPVPSGSALVGSFRLARVDELGPDEARCLWEVDVRVAGAERPAMVAEWLMQLRY
>NZ_CP010323.1|WP_010930566.1|2072106_2072757_-|transcriptional-repressor-LexA
MATKLTERQQEILDLIRQTVARTGFPPTRAEIAQALGFRSPNAAEDHLKALARKGAIELTAGASRGIRLKVPDSATPSAQLTHPLLAQLVLPLVGRVAAGSPILASEHVEREVGVDPGLFAQTPDYLLKVRGMSMRDAGILEGDLLAVKRAAEARNGQIVVARLGDEVTVKRLQRQNGRIELLPENPDFAPIVVANTDEFALEGIAVGLIRTQPLH
>NZ_CP010323.1|WP_010930567.1|2072885_2074088_-|aspartate/tyrosine/aromatic-aminotransferase
MSTLFASVELAPRDPILGLNEQYNADTRPGKVNLGVGVYYDDEGRIPLLQAVRKAEVARIEAAAARGYLPIEGIAGYNKGAQALLLGADSPLAAEGRVLTAQALGGTGALKIGADFLRQLLPQSKVLISDPSWENHRALFERAGFPVETYAYYDAATHGLNFEAMLAALQAAPEQTIVVLHACCHNPTGVDPTPQQWEQIAAVVKARNLVPFLDIAYQGFGEGLEQDAAVVRMFAALDLTMFISSSFSKSFSLYGERVGALTVVAGSKDEAARVLSQLKRVIRTNYSNPPTHGGTVVSTVLNTPELFALWENELAGMRDRIRLMRKELVEKIKTQGVAQDFSFVLAQRGMFSYSGLTAAQVDRLREEHGIYAVSSGRICVAALNSRNIDAVAAGIAAVLK
>NZ_CP010323.1|WP_010930568.1|2074165_2076202_+|excinuclease-ABC-subunit-UvrB
MTAPGFVEFPDSPFHLYQPYPPAGDQPGAIDALTEGVSDGLMFQTLLGVTGSGKTYTMANMIARLGRPALVLAPNKTLAAQLYAEMREFFPRNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQMRLSATKSLLERRDTVIVGTVSCIYGIGNPGDYHAMVLILRTGDRISRREVLARLVAMQYTRNDADFTRGVFRVRCETIDIFPAESPELALRLTLFDDEIESLELFDPLTGRVRQKLPRFTVYPGSHYVTPRETVLRAIETIKEELRERLAQLIADGKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTIGQLGGMYRGDRSRKETLVQYGFRLPSALDNRPLRLEEFEARMRQCVFVSATPAAYEQEHADNVVEQVVRPTGLVDPIVEVRPAHTQVDDLLGEIHKRAALQERVLVTTLTKRMAEDLTDFLSEHGVRVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGRAILYADRITDSMRRAIDETERRRAKQIQHNTDHGITARGVSKAVRELIDGVVAPAGHDALESAVPAEVLTDEKAMAREIRRLEKLMMDHARNLEFEQAAAARDALNALKSRLLLDGVGWSG
>NZ_CP010323.1|WP_010930569.1|2076454_2076946_+|low-molecular-weight-phosphotyrosine-protein-phosphatase
MMTKVLFVCMGNICRSPSAEGVFRYLVNDAGMGDVVRVDSAGTHAFHIGEAPDARAQAAARKRGYDLTHCAARQVTADDFREFDLILAMDWDNLAALQQQCPKAYQHKLMLLMRFANEFEEATVPDPYYGGPEGFGKVLDYLEDACQGVLELVRKRATQYQAA
>NZ_CP010323.1|WP_003812463.1|2077161_2077674_+|Fe-S-cluster-assembly-transcriptional-regulator-IscR
MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRGPGGGYSLARLARNVTVADIIFAVDEPLDATSCGGKRDCTSGNDGKPGKCMTHELWTTLNRKMVDYLDSVSLQDLVDQQRVRQLQEAANQAQGCSAVRVNRSTPVAANATA
>NZ_CP010323.1|WP_010930570.1|2077691_2078903_+|IscS-subfamily-cysteine-desulfurase
MSNRPIYLDYSATTPVDPSVVEKMIPWLYESFGNPASRSHAFGWEAEDAVEKAREEVAKLVNADPREIVWTSGATESDNLAIKGAANFYAERGKHIITVKTEHKAVLDTCRELERQGFEVTYLDVQDDGLLSLDAFKAALRPDTILVSVMMVNNEIGVIQDIAALGEICREKGIIFHVDAAQATGKVEIDLQKLKVDLMSFSAHKTYGPKGIGALYVRRKPRVRIEAQMHGGGHERGFRSGTLATHQIVGMGEAFRLAREEMGTENERVRMLRDRLLAGLTQIEEVYVNGSMEHRVPHNLNISFNYVEGESLIMAIKELAVSSGSACTSASLEPSYVLRALGRNDELAHSSIRFTLGRFTTEQEIDFTIELIKSRVGKLRDMSPLWEMAQEGIDLNSVQWAAH
>NZ_CP010323.1|WP_003812460.1|2078940_2079351_+|Fe-S-cluster-assembly-scaffold-IscU
MAYSSKVLDHYENPRNVGSFDKGDDSVGTGMVGAPACGDVMKLQIKVNEAGVIEDARFKTYGCGSAIASSSLVTEWVKGKTLDEAMNIRNTQIAEELALPPVKIHCSILAEDAIKAAVQDYKTKHGAETPEAVAAN
>NZ_CP010323.1|WP_003812458.1|2079352_2079676_+|iron-sulfur-cluster-assembly-protein-IscA
MAVTLTQSAANHVGRYLQKRGKGIGLRLGVRTTGCSGMAYKLEYVDEQAADDVVFDSFGVKVFIDPKSLAYLDGTELDYAREGLNEGFRFSNPNEKATCGCGESFTV
>NZ_CP010323.1|WP_003812456.1|2079678_2080191_+|Fe-S-protein-assembly-co-chaperone-HscB
MAADDHFSLFGLPTRFALDPVQLEQAWRAVAARVHPDRYATASAAERRVAMQWAARANEAYRQLRDPMLRARYLCEQAGVDLQTESNTAMDPAFLMQQMEWREMLDDARRDPAAFAALRAELEQARLRMQQTLSELIDERGDYQQAGTKVREWMFVEKLAQELSAAQPMQ
>NZ_CP010323.1|WP_010930571.1|2080320_2082183_+|Fe-S-protein-assembly-chaperone-HscA
MALLQISEPGDSPAPHQRKLAVGIDLGTTNSLVAAVRSSVPEVLADAQGQVLLPSAVRYLDGGAVRIGREALLEQARDPLNTIVSVKRFMGRSAADAAASGAPYEFVDAPGMVRLRTVQGDLSPVEVSAQILAVLRQRAEDVLGDDLVGAVITVPAYFDDAQRQATRDAARLAGLNVLRLLNEPTAAAIAYGLDQAAEGIYAVYDLGGGTFDISILRLTQGVFEVIATGGDTALGGDDFDSAIVAHACAGEDVAALPVADRRALLVAARAAREALTDQAQAPFEVTLRDGRAIQATLTRAQFEQLAEPLVGRTLDSARRALRDAGLAVGDVRGVVMVGGATRMPVVRQQVGALFGTEPLTNLDPDQVVALGAALQANLLAGNRALGEDWLLLDVIPLSLGLETMGGLVERIIPRNSTIPVARAQEFTTFKDGQTAMSVHVVQGERDLVSDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLSVTAREQSTGVEAAVAVKPSYGLSDDEIARMLADSVTQADSDARARMLREQQVEARQLVESVGAALAADGDLLDPAERATVDQRLQAAAQAQSLDDVEAVRAAVQALSDATEEFAARRMDRSIRSALAGRKLDELA

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Crispr_ID: NZ_CP010323_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010323_3

3367557-3367666

Orphan

Consensus_repeat	Method
TTGACTGCCAAGACGGTATCTGTCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010323_3

>merge|NZ_CP010323|3|3367557-3367666|CRISPRCasFinder
TTGACTGCCAAGACGGTATCTGTCCCCGCAGGGAGGGTGCCTGTCCCCGCCGGGACAGGCACACTGCTGTACGCCATCGACGCTTGACGGCCAAGACGGTATCTGTCCCC

>NZ_CP010323|3|3|3367557-3367666|CRISPRCasFinder
TTGACTGCCAAGACGGTATCTGTCCCC	GCAGGGAGGGTGCCTGTCCCCGCCGGGACAGGCACACTGCTGTACGCCATCGACGC
TTGACGGCCAAGACGGTATCTGTCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010323.1\|WP_010931353.1\|3351834_3352923_+\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187652
NZ_CP010323.1\|WP_003814239.1\|3372404_3373106_+\|response-regulator	unknown	unknown	gnl\|CDD\|181883
NZ_CP010323.1\|WP_014905422.1\|3369949_3370900_-\|IS481-like-element-IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP010323.1\|WP_023994844.1\|3368882_3369854_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP010323.1\|WP_010931355.1\|3362412_3363183_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NZ_CP010323.1\|WP_003818344.1\|3358128_3359007_+\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|366126
NZ_CP010323.1\|WP_010931357.1\|3368197_3368878_+\|tellurite-resistance-TerB-family-protein	unknown	unknown	gnl\|CDD\|377342
NZ_CP010323.1\|WP_003814739.1\|3365518_3366304_+\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|180789
NZ_CP010323.1\|WP_010931360.1\|3374546_3375602_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|376764
NZ_CP010323.1\|WP_003820957.1\|3377054_3378818_+\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	unknown	unknown	gnl\|CDD\|235424
NZ_CP010323.1\|WP_010931354.1\|3361902_3362370_-\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|178927
NZ_CP010323.1\|WP_019247959.1\|3354223_3357202_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375438
NZ_CP010323.1\|WP_003814742.1\|3367667_3368060_-\|OsmC-family-protein	unknown	unknown	gnl\|CDD\|224679
NZ_CP010323.1\|WP_005013747.1\|3360955_3361906_+\|IS481-like-element-IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP010323.1\|WP_010927010.1\|3373105_3374530_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236531
NZ_CP010323.1\|WP_010931361.1\|3375598_3376939_-\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_CP010323.1\|WP_005013747.1\|3352919_3353870_-\|IS481-like-element-IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP010323.1\|WP_010927090.1\|3363203_3364004_+\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|274569
NZ_CP010323.1\|WP_010931362.1\|3378929_3379808_+\|septum-site-determining-protein-MinC	unknown	unknown	gnl\|CDD\|178806
NZ_CP010323.1\|WP_010931356.1\|3364014_3365424_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|182727

Protein	Function_ID	Function_description	E-value
NZ_CP010323.1\|WP_010931353.1\|3351834_3352923_+\|NAD(P)H-binding-protein	gnl\|CDD\|187652	cd08948, 5beta-POR_like_SDR_a, progesterone 5-beta-reductase-like proteins (5beta-POR), atypical (a) SDRs. 5beta-POR catalyzes the reduction of progesterone to 5beta-pregnane-3,20-dione in Digitalis plants. This subgroup of atypical-extended SDRs, shares the structure of an extended SDR, but has a different glycine-rich nucleotide binding motif (GXXGXXG) and lacks the YXXXK active site motif of classical and extended SDRs. Tyr-179 and Lys 147 are present in the active site, but not in the usual SDR configuration. Given these differences, it has been proposed that this subfamily represents a new SDR class. Other atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.76863e-97
NZ_CP010323.1\|WP_003814239.1\|3372404_3373106_+\|response-regulator	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	4.05363e-90
NZ_CP010323.1\|WP_014905422.1\|3369949_3370900_-\|IS481-like-element-IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	8.10991e-23
NZ_CP010323.1\|WP_023994844.1\|3368882_3369854_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	2.71001e-129
NZ_CP010323.1\|WP_010931355.1\|3362412_3363183_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	9.0439e-10
NZ_CP010323.1\|WP_003818344.1\|3358128_3359007_+\|fatty-acid-desaturase	gnl\|CDD\|366126	pfam00487, FA_desaturase, Fatty acid desaturase.	2.20669e-12
NZ_CP010323.1\|WP_010931357.1\|3368197_3368878_+\|tellurite-resistance-TerB-family-protein	gnl\|CDD\|377342	pfam04391, DUF533, Protein of unknown function (DUF533). Some family members may be secreted or integral membrane proteins.	5.6465e-62
NZ_CP010323.1\|WP_003814739.1\|3365518_3366304_+\|enoyl-ACP-reductase-FabI	gnl\|CDD\|180789	PRK06997, PRK06997, enoyl-[acyl-carrier-protein] reductase FabI.	1.22848e-177
NZ_CP010323.1\|WP_010931360.1\|3374546_3375602_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|376764	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II. This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.	1.57809e-49
NZ_CP010323.1\|WP_003820957.1\|3377054_3378818_+\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	gnl\|CDD\|235424	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.	0
NZ_CP010323.1\|WP_010931354.1\|3361902_3362370_-\|ribonuclease-HI	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	4.07937e-102
NZ_CP010323.1\|WP_019247959.1\|3354223_3357202_+\|hypothetical-protein	gnl\|CDD\|375438	pfam17936, Big_6, Bacterial Ig domain. This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.	1.32844e-07
NZ_CP010323.1\|WP_003814742.1\|3367667_3368060_-\|OsmC-family-protein	gnl\|CDD\|224679	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones].	4.86152e-16
NZ_CP010323.1\|WP_005013747.1\|3360955_3361906_+\|IS481-like-element-IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.05216e-23
NZ_CP010323.1\|WP_010927010.1\|3373105_3374530_+\|HAMP-domain-containing-protein	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	3.78414e-42
NZ_CP010323.1\|WP_010931361.1\|3375598_3376939_-\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	2.21087e-123
NZ_CP010323.1\|WP_005013747.1\|3352919_3353870_-\|IS481-like-element-IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.05216e-23
NZ_CP010323.1\|WP_010927090.1\|3363203_3364004_+\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|274569	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). [Cellular processes, Detoxification].	2.85848e-146
NZ_CP010323.1\|WP_010931362.1\|3378929_3379808_+\|septum-site-determining-protein-MinC	gnl\|CDD\|178806	PRK00030, minC, septum site-determining protein MinC.	3.47756e-166
NZ_CP010323.1\|WP_010931356.1\|3364014_3365424_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|182727	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional.	5.28635e-76

>NZ_CP010323.1|WP_003814739.1|3365518_3366304_+|enoyl-ACP-reductase-FabI
MGFLAGKRILMTGVLSNRSIAYGIARACRDQGADLAFTYVGDRFKERITEFAASFGSDIVLPCDVAEDSQIDAAFAELGKRWDGLDGLVHAIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPAMAKAALPLMEGRKGSVLTLSYLGSERVVANYNTMGLAKASLEASVRYLATALGPRGIRANAISAGPIKTLAASGIKDFSSILKFVEANAPLRRNVTIEDVGNVAAFMLSDLAAGITGEITHVDAGFSTVVPGMEN
>NZ_CP010323.1|WP_010931356.1|3364014_3365424_+|transglycosylase-SLT-domain-containing-protein
MRFLRLLLPLFLAVLAGCAGTAKQNQAAGPSSNRYIAQDTSRTVDLTSPPSDAWDRIRRGFAIPNLNTDLAQEWTDYYASHPESVQRMAERAGKYLYFIVDEINRRGLPTELALLPFVESAYNPTALSRSQASGLWQFIPTTGQHFNLKQDWWRDERRDPIASTYAALDYLEKLFEMQGDWYLALASYNWGEGSVQRAMAKNEAAGLSTDYLSLNMPDETRNYVPKLQAIKNIIANPRKFAVVLPPVENTPYFVAVQKNRDIDIELAARLAEMPLDEFKALNPAFNRPLIRGEHAPTLLLPADRADRFNANLQNYKGDLSSWKVYHTRRGESYAAIAKRFGISEAKLRASNDIGSKRKVAADQALLIPGVPSGDGAANIQLASLSPPVGALDNVGEPRAAAAPRGKAPARVASARPNVRTHKVSSGDTLFGLARKYGTSVGALRALNNLKGNNLKLGSQLRIPGTGTRG
>NZ_CP010323.1|WP_010927090.1|3363203_3364004_+|hydroxyacylglutathione-hydrolase
MQTAPPLSAVVPLPAFSDNYIWALAHEGQAAVVDPGDAAPVLRWLRATGATLRAILLTHHHPDHVGGVLELVQATGATVYGPAGETLPHCDVRLAEGDRVTLPELALALEVLDVPGHTAGHIAYTGRAAGVERVLFCGDTLFAGGCGRLFEGTPAQMLDSLEKLSALPADTQVCCAHEYTLANLRWALAVEPANRTLQQWYQRAQELRNEGTPTLPSTIGQERETNPFLRTPHAAVAHAAAVWSGRSLATPVEVFAALRQWKNNFK
>NZ_CP010323.1|WP_010931355.1|3362412_3363183_-|methyltransferase-domain-containing-protein
MAEETPPIVELAEWFQTPPGQYVLAWEQAQFDEAVADIFGYYAWQVGLAEPNLLRANRMPFKAWVGAGVPPPELAQGWQACVAAAPEALPFESQSVDLLVLPHAFECAEAPHLVLREVERVLVPEGRVVISGFNPWSLWGARNLMPGMEAWLPLPLSAQVALPRLKDWFKLLSFEVERGRFGCYAPACRTDKWLRRWRFMERYGQRWWGLGGAVYVVTATKKVAAMRLIGPAWKTRRKRAQAASVVVNRQADDPGR
>NZ_CP010323.1|WP_010931354.1|3361902_3362370_-|ribonuclease-HI
MQNLEGSGDGQQVEMWTDGACKGNPGPGGWGVLMRAGQHEKTMHGGERQTTNNRMELMAVIEGLRALKRPCRVTIHTDSQYVMKGMTEWLANWKRRGWRTADKKPVKNVELWQALDEQVGRHQVQWRWVRGHAGDPGNERADALANQGMEAARGR
>NZ_CP010323.1|WP_005013747.1|3360955_3361906_+|IS481-like-element-IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>NZ_CP010323.1|WP_003818344.1|3358128_3359007_+|fatty-acid-desaturase
MVRPAEWLRHRRDWQSVLYLAALPALAAWQWVHGWHWALYAPMLFLTLGVGVIHHNHAHRRMWRPRWLNRLTDFWLTLLQGHPTFVFHAAHNANHHRYKHGPRDVARTYRFGGDTNHLAGYLLHPLQAVVVLYPLFLASLRRLRSRRPGVWRYCLRQYAAWLGLWGGLLALDPGKAFWLVIVPQLHGLHWLLATNYLQHAHADGGPGRHAALSYARNFEGWVNPLLFNIGLHTAHHENPRAHWSELRALHWQHYRDRVPSRLNERGLAPYMARVFVLGLFSRRCRTHTLMRP
>NZ_CP010323.1|WP_019247959.1|3354223_3357202_+|hypothetical-protein
MQLWLPDGTATSVRANAAGGFEASSAGDMTSGLIRARATDRYGDTSQEVTYAYTDTVDKTAPVLSIAGVATDEATGRVTVTGRSEPDAQVTIRFPGGGRKTVRADANGAYRVRSDGDLPAGVIVVQAADAAGNSTQAQQAYQDTVDRTAPEPVQIALDTDAATGRLTVSGQAEPGGSVTVTWPDGTTQTVRVDADGGFRVTSAGDAAQGDVVVVVADQAGNRAAPVRAHYADPVDRTAPMTPTVRHATDAQTGRVTVMGRTEAGALVTVQFPDGSSKTVRAQNDGGYAATSDTDMVSGPIVVSAGDADGNRTPAQQVMYTDTLDKTAPASPSLTVREDAASGRATVTGQAEPGAAVRVVFPNGEAQTVTAGSDGAYSVTSTADMVAGEITVVAADASGNQSAPARTVFADAVDKTAPAAPTLALSEAADSGRLTVSGRTEPGASVRVTFPDGETVTVTAKADGTYTATSRADMIGGNVTVVATDTAGNAAAPVRAAYADTVDRTPPVLDTPVLNVASDSGRVTVTGVTEPGARVQVAIPGESLQTVTADSAGRYRAVSPGDVLQSGTVRVIATDAHGNASAPRDVPYQDAVDRTAPPLTIEAAVEQARTGVVNVSGKTEPNLMVSATFPDGQTAQARADGQGRYQLASPADVARSGRIAVSASDAAGNRAAARAEFTDQVDKTAPAVTIRAVTEQAGTGVATVSGATEPGATVSVTFPDGQVARATADRSGAYTVHSARDVTARGNISVIATDAAGNASPSVSRQFSNTVADTVPPSLTIAMVTTDPGNGRITVSGVTEAGARVHVVFPGGASDTVTADSKGGYRATSAGDVGSGAVTAQATDASANRSPLKTYAYTDAWQPRQLSAKDFSQSRYFVPLTTRGGTDNEPLLRITTNQQIPTAELRVALKPYKTEDRAGRLVREAITLKWGNAPGVGGDARALHFYVPDSAKAKLRKELTEVERSNDYKFWIEFTDTRFGGVARLYIKVISTL
>NZ_CP010323.1|WP_005013747.1|3352919_3353870_-|IS481-like-element-IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>NZ_CP010323.1|WP_010931353.1|3351834_3352923_+|NAD(P)H-binding-protein
MTGSTAGKVLVVGALGVVGRAALEHFGQRPGLARVGLSRHAPDFAPEASWVSADLRDAQATRAALAAHGDATHVVYAALNEQPDLLKGWRDSGNVDLNTGMLRNTLDALREAPLRHVTLLQGTKAYGVHTGRPMPVPARETDAVRDHANFYFDQQDLLAERAAAQGFGWTIFRPQIVLGVALGSAMNPVATLGAYAALSREAGQPLRYPGHPHLLTECTDARLIARAIAWAWDEPRAHGEAFNIANGDVVLWQPVFERLAALFGMPLGEPVDTRMREAMPQLAERWRAIAERERLAVPELRDLIGLSWQYADATWAARHPLPVPPLVSTIKLRQAGFGDCIDTQDCIVEHLREMQRLRYLPR
>NZ_CP010323.1|WP_003814742.1|3367667_3368060_-|OsmC-family-protein
MTIQVRANTPGGLQYTATAEGHELPLAMPQPQGEGPDPHDYFDTALGGCKALTLMVYAQRKGLPLQAVDVDVVRDASEERKGIYRLTAKLKLHGDLDDAQIDELLKVADKCPLHKLMTATDIQVSTIVVE
>NZ_CP010323.1|WP_010931357.1|3368197_3368878_+|tellurite-resistance-TerB-family-protein
MSARQLLDQLLQSGQSLMQGAGAQAQQATQGGKGTFLAGLGGGALGAGALGLLLGSKKARKIGGKVAMYGGMAALGALAYRAYDQYQRNQAGGAAAPAPQTLDRLPPAPAEQHSNAVLVAMIGAAKADGHIGPDERQLLETELAKLSGDAGDRAWLEAELARPLDPAVIAQQARTPEMGAEMYLASLLVADEQSFMERAYLDELARQLKLPAELKQQLEAQVPAAA
>NZ_CP010323.1|WP_023994844.1|3368882_3369854_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MKSQVSILLAGCLLGAGAAAAQAPATYPDHAITIVVTFPPGGGTDLLARKLGAAMQQRLGQPVVVENRPGASGNIGARAVAEARPDGYTLLMVNSSFAVNPGVFRNLDFSPTRDFTAVINVAYVPSVIVTAEPAGDAGLPERLRQADTQSRTLAFASCGNGTPQHLAGEMLRQASGAWLQHVPYRGCGPALTDVLSRQVPLGIVTASSAAPFIHAGKLRALAVTSAQRSPLLPDVPTVAEQGAPGYELDQWHGLLAPAGTPPAVIQRLYEALSAIVAEPAMRRELESLGFNPVSEGPERFEALVQADIARFAALTARMGLRAD
>NZ_CP010323.1|WP_014905422.1|3369949_3370900_-|IS481-like-element-IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVRS
>NZ_CP010323.1|WP_003814239.1|3372404_3373106_+|response-regulator
MDNPHTKLLVVDDDPALRQLLADYLNRHGYDTLLAPDASDLAARITRYAPDLLVLDRMLPGGDGADACRRLRDQGEDIPVILLTARDEAVDRIIGLEAGADDYLGKPFDPRELLARIEAVLRRKRGPSALTKDAPVSFGPFVFDPATRQLLRDDTPVKLTGGEINLLEALVRNAGKPLSRERLLALARDDDGGERNDRAIDIAILRLRRAIEEDPKQPRWIQTVWGIGYRFSP
>NZ_CP010323.1|WP_010927010.1|3373105_3374530_+|HAMP-domain-containing-protein
MKLLRLPAPRSLRMRLILLVLGSVLLAQAATLATVSYFRHKFMEDVAIDYIATTIRTLRASLSQVPTDERAEFVRQASGNQWRLWSRSLPADARLQRWHRGPQEDEAERERMRREYERRHPPPDDIRRDLRGLVSELNERLSDGTRVALSRGPRPEIFISLAPSPSPDDAPPLREWLVIPLERLDPPVATPLIAFWVGGIGLVLLLAAWFSWHITRPLTRLADAADQLAAGQPQRVEPSGPHETRVLGERFNAMLDALAESDSVRRTLLSGLPHDLKGPLSRMWLRIEMADDPTLKEGLRKDLQDMQHMVDQFIGFVRGTDPAAYRYAPLALGEWLAERVGAWQGAGTDIRLQAPDNGALGIQADAVALGRLLDNLIGNALHHGAPPVEVSLRRDADMAVLEVSDHGPGIAPERRTEALRPFARLDDARTRTGNVGLGLALAEAIARAHGGGLELRQAPSGGLLVRITLPLAKA
>NZ_CP010323.1|WP_010931360.1|3374546_3375602_-|cytochrome-d-ubiquinol-oxidase-subunit-II
MIATLAASLGLSPDDPSFWMPLVFVGLLLLLMAAGIVLDGFDIGVGLLLQLAPSEERGRMMGLLSPWRDANEFWPLLGLGLFVSAFPFAWGGVLGKLFGPLTVMALGMVLRSVSFEFRIRARTEIKPRWIFGFWVGSLLTALGQGMVLGRIATDYQADSGYGWFAFFVGLCVMAAYALLGACWLVMRVDGELQRRAAGWARHSIRWTAAGMVAIAVTLGLANAGIFYKWSNTAHLGVAAMVWALMLLGFVAAEMLLARLPGKADGFSWLPFVLCVMLFVLMLCGLAYSFFPYLILDDMTIWDGSGALDSMRLVLAGTVIGVPVVLVFNILAYRSVFGKERRPVPLLPPPGA
>NZ_CP010323.1|WP_010931361.1|3375598_3376939_-|cytochrome-ubiquinol-oxidase-subunit-I
MNIPPLLLARAQFTASLGFLALFLAISLALAWLLLFFKLRARWSGQSGWTAAYRFWVRIFALAFVLALACAVPVLIQLGSLWSGLMDKIGNLAGPLLGYGVLSIFIVKSCFLGVMLFGQRRVSDAAHTLAVLMVAIGQLVAVGWVLALFSWLQTPDGAVLIDGRYQVYDWRAVVLNPSFGWRLGLTVLGAFLTAGFLMLGVTAMQALRRPLDDGERHAFRAGLTVALLASLLLGPVAAGMGEVTARLQPAKAAAAAGFWHSGAEPELVVFGWPSARAQANLAAVSLAGAGGRWLHRDASLGYLGLDKFSGMQPPVAFTFWSLRLALGLGLLMLAASCATLALTCRRGFDPVALPRWWLRVLSLLMFAGALGVVATWCYDLAGMQPYAVNRAVTQSEVLGPVTTPALLYSLAGHIALYAVLLAAFVGMLFHAARYGVVPVRKTGGSS
>NZ_CP010323.1|WP_003820957.1|3377054_3378818_+|glutamine--tRNA-ligase/YqeY-domain-fusion-protein
MTHAPTPPAASNFLRPIIEDDLQANRFQGKLWAGKPGPAALQAQGQPDPARIRTRFPPEPNGYLHIGHAKSICVNFGLARDYGGVCHLRFDDTNPEKEEQEYVDAIIEAVHWLGFDWQADGNDNLYFASDYFEFMYEFAEALVQAGHAYVDEQSAEEIRASRGTLTEPGTDSPWRDRPADESLLRLREMRDGKHPDGSLVLRARIDMASPNINLRDPVMYRVRHATHHRTGNAWCIYPMYSWAHPVEDALEGITHSICTLEFEDQRPFYDWILARLAELGKLARPLPHQYEFARLNLTYVVTSKRKLLQLVREGYVDGWDDPRMPTLFGLRRRGYTPSSIRLFCDRTAVSKSDSRIDYSLLEQAVRDDLDPVAPRSVAVLDPLKLVITNYPEGRSETCSAPRNPHDPQAGVREFPFTRELWIEQDDFREEPPKKYFRLFPGNTVRLKYGYVVRCTGFTKDESGKVVEVQAEYLPDTKSGTPGADSVKVKGNITWVSAAHAVPAQVHLYDRLFADAHPDGGDKDFLACLNPNSKQTVQAWLEPGIEAVPGATWQFERLGYFTVDSKDSRPEAPVLNRIVTLRDSWQAA
>NZ_CP010323.1|WP_010931362.1|3378929_3379808_+|septum-site-determining-protein-MinC
MNTESLALDFKSATLYAIRVVLHDADTTRLRAALDKRMADAGSFFENEPVVIDATRVDAPVDWPALLQALADHNLPPIGVVAEGANLQGARDAGLVPVELSTSVARAPQVIDTAPPNDVATPVPSVPEATAEATAKAGPQDDEADGEQADEAPAHNPESVPTRAARETTEANRPTATPPQSSSALVITKPLRSGQRVYARHTDLIVIGMVSQGAEVIADGNVHVYGPLRGKAMAGARGDTSARIFTTQLDAELLAVAGVYRVVEDKLDRALHNQPALVRLDGDTLRIEALKG

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Crispr_ID: NZ_CP010323_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010323_4

3601856-3601949

Orphan

Consensus_repeat	Method
GTGCCTGTCCCGGCGGGGACAGGCAC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP010323_4

>merge|NZ_CP010323|4|3601856-3601949|CRISPRCasFinder
GTGCCTGTCCCGGCGGGGACAGGCACGCCCGCACAGCGGGCGCAGCGTGGGGGTTTTCCTGGGCCCGGGTGCCTGTCCCGGCGGGGACAGGCAC

>NZ_CP010323|4|4|3601856-3601949|CRISPRCasFinder
GTGCCTGTCCCGGCGGGGACAGGCAC	GCCCGCACAGCGGGCGCAGCGTGGGGGTTTTCCTGGGCCCGG
GTGCCTGTCCCGGCGGGGACAGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010323.1\|WP_003814720.1\|3613550_3614609_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NZ_CP010323.1\|WP_003814726.1\|3607618_3608932_+\|short-chain-fatty-acid-transporter	unknown	unknown	gnl\|CDD\|224942
NZ_CP010323.1\|WP_003814681.1\|3591960_3592938_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106
NZ_CP010323.1\|WP_003820700.1\|3600865_3601210_+\|TIGR01244-family-phosphatase	unknown	unknown	gnl\|CDD\|225984
NZ_CP010323.1\|WP_019247419.1\|3590662_3591835_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173841
NZ_CP010323.1\|WP_019247421.1\|3602179_3602578_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|234569
NZ_CP010323.1\|WP_010929577.1\|3602709_3603660_-\|IS481-like-element-IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP010323.1\|WP_003814728.1\|3607248_3607428_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377342
NZ_CP010323.1\|WP_003814685.1\|3592948_3593920_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234
NZ_CP010323.1\|WP_003814691.1\|3594764_3595997_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NZ_CP010323.1\|WP_003814701.1\|3601298_3601769_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP010323.1\|WP_010929785.1\|3610455_3611661_-\|sodium/glutamate-symporter	unknown	unknown	gnl\|CDD\|129314
NZ_CP010323.1\|WP_010929789.1\|3597058_3597577_+\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|224204
NZ_CP010323.1\|WP_022997984.1\|3611856_3612834_-\|IS481-like-element-IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP010323.1\|WP_033446199.1\|3612926_3613421_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP010323.1\|WP_010929791.1\|3593986_3594772_-\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|181723
NZ_CP010323.1\|WP_003814730.1\|3606104_3606839_+\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235574
NZ_CP010323.1\|WP_003814694.1\|3596192_3596948_-\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930
NZ_CP010323.1\|WP_010929788.1\|3599365_3600766_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP010323.1\|WP_010929786.1\|3608947_3610459_-\|TAXI-family-TRAP-transporter-solute-binding-subunit	unknown	unknown	gnl\|CDD\|270238

Protein	Function_ID	Function_description	E-value
NZ_CP010323.1\|WP_003814720.1\|3613550_3614609_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	4.18053e-89
NZ_CP010323.1\|WP_003814726.1\|3607618_3608932_+\|short-chain-fatty-acid-transporter	gnl\|CDD\|224942	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism].	6.57351e-166
NZ_CP010323.1\|WP_003814681.1\|3591960_3592938_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.33368e-60
NZ_CP010323.1\|WP_003820700.1\|3600865_3601210_+\|TIGR01244-family-phosphatase	gnl\|CDD\|225984	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown].	3.40043e-35
NZ_CP010323.1\|WP_019247419.1\|3590662_3591835_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	4.27565e-82
NZ_CP010323.1\|WP_019247421.1\|3602179_3602578_+\|GTP-binding-protein	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	1.37761e-90
NZ_CP010323.1\|WP_010929577.1\|3602709_3603660_-\|IS481-like-element-IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.02206e-23
NZ_CP010323.1\|WP_003814728.1\|3607248_3607428_+\|hypothetical-protein	gnl\|CDD\|377342	pfam04391, DUF533, Protein of unknown function (DUF533). Some family members may be secreted or integral membrane proteins.	0.00323203
NZ_CP010323.1\|WP_003814685.1\|3592948_3593920_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	2.06741e-117
NZ_CP010323.1\|WP_003814691.1\|3594764_3595997_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	8.36236e-118
NZ_CP010323.1\|WP_003814701.1\|3601298_3601769_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.38587e-30
NZ_CP010323.1\|WP_010929785.1\|3610455_3611661_-\|sodium/glutamate-symporter	gnl\|CDD\|129314	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS). [Transport and binding proteins, Amino acids, peptides and amines].	1.2444e-106
NZ_CP010323.1\|WP_010929789.1\|3597058_3597577_+\|MgtC/SapB-family-protein	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	1.12064e-44
NZ_CP010323.1\|WP_022997984.1\|3611856_3612834_-\|IS481-like-element-IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.0826e-23
NZ_CP010323.1\|WP_033446199.1\|3612926_3613421_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.34959e-07
NZ_CP010323.1\|WP_010929791.1\|3593986_3594772_-\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|181723	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein.	5.15941e-155
NZ_CP010323.1\|WP_003814730.1\|3606104_3606839_+\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|235574	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional.	2.40573e-142
NZ_CP010323.1\|WP_003814694.1\|3596192_3596948_-\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.14565e-78
NZ_CP010323.1\|WP_010929788.1\|3599365_3600766_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	3.43796e-109
NZ_CP010323.1\|WP_010929786.1\|3608947_3610459_-\|TAXI-family-TRAP-transporter-solute-binding-subunit	gnl\|CDD\|270238	cd13520, PBP2_TAXI_TRAP, Substrate binding domain of TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold. This group includes Thermus thermophilus GluBP (TtGluBP) of TAXI-TRAP family and closely related proteins. TRAP transporters are ubiquitous in prokaryotes, but absent from eukaryotes. They are comprised of an SBP (substrate-binding protein) of the DctP or TAXI families and two unequally sized integral membrane components. Although TtGluBP is predicted to be an L-glutamate and/or an L-glutamine-binding protein, the substrate spectrum of TAXI proteins remains to be defined. A sequence-homology search also shows that TtGluBP shares low sequence homology with putative immunogenic proteins of uncharacterized function. The substrate-binding domain of TAXI proteins belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and tworeceptor cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.13066e-82

>NZ_CP010323.1|WP_003814701.1|3601298_3601769_+|universal-stress-protein
MFKKILIPTDGSPLSAQAANAGICFARSTGAEVVALHVTQPFAATIGFDGMAAAYAITDEDYEKASAEQAEKYLKLILDRAETAGVKAESRAVSNFNVADGIVQAAGEAGCDLIFIGSHGRSGLSRLLLGSVTAKVLSLAHTAVLVYRVKEDKDKK
>NZ_CP010323.1|WP_003820700.1|3600865_3601210_+|TIGR01244-family-phosphatase
MSAAIKPLTENFAVAPQLGPADMADVAAAGYKSVIINRPDFEGGPDQPTAADVSQAAQALGLQVEYQPVVGSAMTAADVARFAELLRTMPGPVLAYCRTGTRCTNLFAAAQQLG
>NZ_CP010323.1|WP_010929788.1|3599365_3600766_+|PLP-dependent-aminotransferase-family-protein
MRQADATLVTQLADDLARRIDEHGLRPGTRLPSIRRMAEQSGVSRFTVVEAYDRLVARGLVQSRHGAGFFVRARSASLTALASARVPQAAPETPVRVDVSWLLRNMFRETAAGMPGGAGLLPPEWLDPDMVAAAVRAVGRTVRGNLVSYGSPQGYAPLRQQLASMLQADGVPAHPERNLLTTNGVTHGLDIVARHLIKPGDTVLVEDPAWFVIFGRLAAFGARPVGVPRGPDGPDLAMLDRLAAEHKPRLYIINGAVHNPIGHTLSAGAAYDILRLAERHDFMVVEDDTYADLHPGGAMKLAALDRLERVILVGGFSKMLAASLRVGYIAAGAETLQRLTDLKMLAGLTSPELGERVVHRVLVEGQYQRHIERVRARVNEARLRSIQALQQLGLSVPHEPHAGMFVWADCGRDSEPVARNAAERGMLLAPGTLFSPSGAPSTMLRFSVAMVDTPGIWQSIAAVMAQ
>NZ_CP010323.1|WP_010929789.1|3597058_3597577_+|MgtC/SapB-family-protein
MDTVWMEIWTTVRNEFADIPDVAEATRIVLRLGMAVALGGLLGYERERSGKAAGLRTHMLVALGAALFVLVPLQGGMEVGDLSRVLQGVIAGIGFLGAGVIIKLGNEGEIRGLTTSAGIWLTAAIGVAAGMGREATALASTLIALFVLAALRRLEKRIAARDDKRVVAQPPP
>NZ_CP010323.1|WP_003814694.1|3596192_3596948_-|TerC-family-protein
MDYLVSLAQQPAAWAALATLIAMEVVLGIDNLIFISILTNKLPPQHQTKARRIGIGMALILRLALLGTVAFIVQLTQPVFELFGHGFSWRDVILVAGGLFLVWKATKEIHHHVDPNPGDDMFGGKAATLGFAAAVAQILMLDLVFSIDSIITAVGMTEHIPIMFVAVIVAVAVMLLAAEPLARFIERNPTVVMLALAFLMMIGMTLIAEGFGAHVPKGYIYAAMAFSALVEGLNMMARRAREGRGAGAAGG
>NZ_CP010323.1|WP_003814691.1|3594764_3595997_-|CoA-transferase
MSGPLEGVRILDVTTVLMGPYATQILGDLGADVIKVEPPAGDNVRGIGPGRHADMGGIFLHANRSKRSIALDLKNPAGREALLKVAATCDVLVYNVRPQAMARLGLSYAEVAQANPSILYVGMYGYDQRGPYAARAAYDDLIQGAVGIPSLSVEAGSDIPRYAPSAMVDRIVGISAANAVTAGLYHRARTGQGQAIDVPMFETMAHLILGDHMMGQTFEPPLGPPGYPRILNADRRPYATRNGHICVLLYADKHWKAFFELIGQPGRDAADPRFRDIGTRTQHIHAIYRLVSDAIASRTTEEWLAAFEAADIPAMPVHTMASLLRDPHLEAIGFFGMVDHPSEGAVRMMAVPSRWSGTPPQPRGHAPRLGEHSVDVLKEAGYDDEAIAALVRNGAAIAAARQLPEGTDHD
>NZ_CP010323.1|WP_010929791.1|3593986_3594772_-|crotonase/enoyl-CoA-hydratase-family-protein
MTDFLRHERHGGVLLLTMDRERTRNALSDADAVEALVQACARIGADLSVRAVVLTGSHGVFSSGGNLKTLSDTVGAGLGEPVHSLQAYRSGIQRIPLALYNLEVPTIAAVNGPAIGAGCDLACMCDIRLAARQASFAESFVKLGLTPGDGGAWLLPRIVGMSRACELAFTGRSIDAARARELGLVSEVFDADALLPAALALAQEIAQHSGHALRLTKRLLREGQHTRLDTLLELSAGFQALAHHTQEHAGALDAHLSRKRG
>NZ_CP010323.1|WP_003814685.1|3592948_3593920_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MHSRTLALALLSVAALAQGGSARAASDYPAHPVKIIVSLPPGSGADTTARFLSKHLAERFKQPFVVENRPGGNSFIAAQAVATAPPDGYTLFVASNSPMTTNAAVFKNLPYDAVKDFAPVAPIARFPMALVVPANSPYRSVADLVAAARAAPGQLNFASGTATYQVVLELFHEQNGIKATHVPYKGTSAALADVAGGVVQYSVADVSAALPLIRGGKLRPLAVTSTRRIKDLPDVPTMQESGNKGFEAYAWTAAFFPAKVDPAIVARVSDAVQALVRSQEGKAFMEQLGGEPFVGGPDTLAAFQRDELASMRRIAKLANIQQE
>NZ_CP010323.1|WP_003814681.1|3591960_3592938_+|LysR-family-transcriptional-regulator
MWTGQYIVHIASPAHHWRRAVELRQLKQLLVLSETLNFHRAAERLHMAQPPLSTAIKKLEQELGVQLFERLPAGLQPTPAAEVVLRYARATLFYADEIQRAAQEGASGKQGMLKVGFVGSSIYSLMPQLLSAFRKDYPRVDLVIEESTTVDLLRRLDAHTLDVALVRFPVLEPSTARITLLQADHLMLAVPAGSRYAQRDDVALDELADEPFIGYSRTHVPGMHALIMYAFQQYGVVPHIAQEAIQVQTILSLVESGLGLAIVPKVACRQAGSGVRLVNVPQLAETIKVGIALAVHPDNATPTTANFVDMACRLMQTEPAAGQAR
>NZ_CP010323.1|WP_019247419.1|3590662_3591835_-|acyl-CoA-dehydrogenase
MGAILGTIIEALQLAAIPAHDEALRPAVRAFLDEALREMPADRRARSWMGHDAEFSRALARQGWLGLTLPVEYGGAGRSNFARFVLSEELLAVGAPVSAHWVADRQTAPLILRFGSPAQRAFYLPRIIRGEAFFAIGMSEPDTGSDLASVRTRATPVADGWLLNGRKIWTTNAHRSHYMCALVRTSGAPEDRHRGLSQMIFDLALPGIEIRPIRDIAGDAHFCEVLFDNVLLPHDALVGEEGSGWRQVMAELALERSGPERIYSSMVLLDGWLAHLRCDAAPQRAQVCLAGRLAARLAVLRSMSLAVSQRLEQGADASLAAVLVKDLGTEFEQAVPELIGQALHASPQPAPDDVLMRTLAYLTLINPTFSLRGGTRHILRGIIARELGLR
>NZ_CP010323.1|WP_019247421.1|3602179_3602578_+|GTP-binding-protein
MTRRTSIERYRNIGISAHIDAGKATTTERILFYTGITHKLGEVHEGAATMDWMEQEQGRGITITSAATTAFWRGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGACMVYDSVGGVQEVATVMVVLPGQ
>NZ_CP010323.1|WP_010929577.1|3602709_3603660_-|IS481-like-element-IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
>NZ_CP010323.1|WP_003814730.1|3606104_3606839_+|DNA-polymerase-III-subunit-epsilon
MRQIIFDTETTGLDPAQGHRIVEIGCVEIVNRMVTGNNLHLYLNPDRDSDPEALAVHGLTTEFLADKPRFAEVAEQFLAFIADAELIAHNAAFDVKFFNAELQRIGRDPLNTHCENIVDSLLHARSLHPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLIDVDDQGANANGALVLGKFDASVLTVLAASEAELAEHAAYLQALDKAVGGACAWRAIEPLPAESGQPG
>NZ_CP010323.1|WP_003814728.1|3607248_3607428_+|hypothetical-protein
MHPDTNTMLIIIAAAVALMIVGFGLRDRNLGLGLLGIGLIAALATIAYKAYITFNSFYY
>NZ_CP010323.1|WP_003814726.1|3607618_3608932_+|short-chain-fatty-acid-transporter
MFKLMSRSAVKMVERYLPDPYVFVVLLTLVAAGAAMIIEGQTPMAVVRWWGNGFWGLLTFAMQMLLVLVTGYMLASTPLVKRMLARLASLATSAGGAIILVSVVSLAASWINWGFGLVVGALFAKQIARQVRVDYRLLVASAYSGFIIWHGGLAGSIPLTIATEGHFSADKIGIIPTGDTIFAVFNLVIVVAMFILVPLVNRLMLPDEKESVYVDPARLEEASVPASDDDKRPAARLENSRLLAWLIAAGGLAYMFDYYVVRGAGLNLNVINFSFLILAILLHGTPRRLLASLDEAIKGGAGIVIQFPFYAGIMAIMMDSGLAATLSEWFVSIASAATLPFWTFISAGIVNIFIPSGGGQWAVQSPIVISAAQALGADMPRVAMAVAWGDAWTNMLQPFWALPVLAIAGLKAKDIMGYCIIQLLVTGVIISVGLSFF
>NZ_CP010323.1|WP_010929786.1|3608947_3610459_-|TAXI-family-TRAP-transporter-solute-binding-subunit
MTMFIRWLILSACLLLAACSRAPDTEILQRDVGQTLAATYGPDLFDIVALRRMGSATDSTAPPGQTRRVVYYDVVLGLKKDLTLGAWDQPGAAALVSLLGAGPRSISGVKSSGNAAGDQIVAHASAIYQRDAEQWVHVAPASFTATEAPSLDTGAPPPVTRQLLQTLEQITRSVPYSASSTAQHVVQQELERSVARINGRLARLQKGYPLATGPDKGEYLAFGQALAAIGRNEQVRVIPLITGGSADNMAMLRSGAAVAALSQADIAQLAYEGKGPFESQGPFSGLRALGSLYPELVHIVVRQGDGIATVGALRGKKIALGPSGSAVRTTLETVLAAHGLQPGRDYAVIDTPAAAALPQLSEGRVDAVAQVIGTPAAPLRAALTQARLALLPLDRAAIDKLVQADPTLMALDIPANTYPSQAAAIPTVGMAALLVTTADLTRDEAAHMVDVVYRAGQDLLAAGSAQGAQVSAANAGRGLSIPLHDGAVEAFEKLGAPPLPEGR
>NZ_CP010323.1|WP_010929785.1|3610455_3611661_-|sodium/glutamate-symporter
MISLTPVQSLLACCLVLVAGRILTTRIGVLSRYSIPDPIVGGLLFAVLATALDTWGGIQISLETNIKPTLLLIFFGCIGLTADLKLLARGGPRLIAFLLALIPFLVLQNAVGLGLAWLLDMHPLMGLIGGTITLVGGHGTGAAYAARFADINNIQDVMALAMTAATIGLVLGGIIGGPVAEWLIRRHKLDPRMAGKDANQVLPEVETTAEAPTATSFITSLTAVFVTVVVGTYLAGLVEDAPISLPNFLWCLATGAIIRNFGGYVGIRLDDRVSEIIGSISLSLFLGLTMMTLDLSSVVRLAGPLALMLVAQALVCALYAGWAVFRMLKRDYEAAVMAAAFCGFAMGATATAIANMQALTRRHGPAPESFIVVPVTGAFLVDILNVIVLTSLIALPFVGGM
>NZ_CP010323.1|WP_022997984.1|3611856_3612834_-|IS481-like-element-IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHSYMVRADLAG
>NZ_CP010323.1|WP_033446199.1|3612926_3613421_-|GNAT-family-N-acetyltransferase
MPQSYIVRTMRPADVEAVLRVQAAVYPASLLESAALFQNRIEIAPATCQVALDGQDLIGYLIAYPWDAGLPPALDRSLERLPGAADTWFVHDCAVLPAAQGGGVAAALLAGGRAQARRLGLRRASLVALAQAVGYWLRHGYQPLADSDALRAKLAGYGDGARYM
>NZ_CP010323.1|WP_003814720.1|3613550_3614609_+|glycosyltransferase-family-2-protein
MFMYTEFRSQLLAGAGTSAAGQSARMAVLAGDGATGVQVSCVVPGLNEAANLRVLVPALRACLEQWCASWEIIVVDDGSTDDTAELMAQWSAVEGIRYVQLSRNFGKEAALTAGLEAADGDAVICLDADMQHPPELIGDMLAAWRNGADMVYAVRRQRDDEPWFKRVGARAFYRLLSTARGVEVPPHAGDFRLMDRRVVEALVALPERTRFMKGLYAWVGFKSQAVPYTPQARRHGASHFSAWKLFRLACDGLTAFTTWPLRLVSLIGVLFALLSLSYGGYLVADYLISGNAVSGWTTIVTALLFFAGINLISLGVVGEYVARIFDEVKGRPLFIARQRRGRAKRAAKARSQ

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Crispr_ID: NZ_CP010323_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010323_5

3877872-3877956

Orphan

Consensus_repeat	Method
CTGTCCCCGCGGGGACAGGCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010323_5

>merge|NZ_CP010323|5|3877872-3877956|CRISPRCasFinder
CTGTCCCCGCGGGGACAGGCACCCTGTCATACGCCATGAACGCTTGACGGCCAAGACGGTATCTGTCCCCGCGGGGACAGGCACC

>NZ_CP010323|5|5|3877872-3877956|CRISPRCasFinder
CTGTCCCCGCGGGGACAGGCACC	CTGTCATACGCCATGAACGCTTGACGGCCAAGACGGTAT
CTGTCCCCGCGGGGACAGGCACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010323.1\|WP_010929708.1\|3869773_3870754_+\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NZ_CP010323.1\|WP_010929701.1\|3882017_3882509_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|172582
NZ_CP010323.1\|WP_003814321.1\|3865829_3867584_-\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|223482
NZ_CP010323.1\|WP_003814332.1\|3874308_3874947_-\|membrane-protein	unknown	unknown	gnl\|CDD\|182775
NZ_CP010323.1\|WP_010929703.1\|3879966_3880665_+\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
NZ_CP010323.1\|WP_003814324.1\|3868654_3869638_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugE	unknown	unknown	gnl\|CDD\|270295
NZ_CP010323.1\|WP_003814337.1\|3876919_3877861_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NZ_CP010323.1\|WP_003814339.1\|3877966_3879016_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP010323.1\|WP_019247543.1\|3872780_3874166_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|182376
NZ_CP010323.1\|WP_010929704.1\|3879268_3879970_+\|DnaA-regulatory-inactivator-Hda	unknown	unknown	gnl\|CDD\|236347
NZ_CP010323.1\|WP_003814355.1\|3884894_3886997_-\|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl\|CDD\|129868
NZ_CP010323.1\|WP_003814363.1\|3890019_3890430_-\|4-carboxymuconolactone-decarboxylase	unknown	unknown	gnl\|CDD\|131478
NZ_CP010323.1\|WP_003814356.1\|3887167_3888211_+\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270320
NZ_CP010323.1\|WP_003814358.1\|3888254_3888998_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP010323.1\|WP_033461782.1\|3875033_3876923_+\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NZ_CP010323.1\|WP_010929706.1\|3872313_3872850_+\|bifunctional-alanine-racemase/tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|223873
NZ_CP010323.1\|WP_010929709.1\|3867690_3868590_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176107
NZ_CP010323.1\|WP_010929707.1\|3870770_3872162_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NZ_CP010323.1\|WP_010929702.1\|3880665_3882021_+\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|130997
NZ_CP010323.1\|WP_003814351.1\|3882527_3883484_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296

Protein	Function_ID	Function_description	E-value
NZ_CP010323.1\|WP_010929708.1\|3869773_3870754_+\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	1.13912e-41
NZ_CP010323.1\|WP_010929701.1\|3882017_3882509_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|172582	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase.	2.78166e-87
NZ_CP010323.1\|WP_003814321.1\|3865829_3867584_-\|gamma-glutamyltransferase	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
NZ_CP010323.1\|WP_003814332.1\|3874308_3874947_-\|membrane-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	1.10927e-69
NZ_CP010323.1\|WP_010929703.1\|3879966_3880665_+\|HAD-IB-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.91431e-64
NZ_CP010323.1\|WP_003814324.1\|3868654_3869638_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugE	gnl\|CDD\|270295	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	4.35876e-158
NZ_CP010323.1\|WP_003814337.1\|3876919_3877861_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	4.17279e-156
NZ_CP010323.1\|WP_003814339.1\|3877966_3879016_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP010323.1\|WP_019247543.1\|3872780_3874166_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|182376	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA.	1.25625e-84
NZ_CP010323.1\|WP_010929704.1\|3879268_3879970_+\|DnaA-regulatory-inactivator-Hda	gnl\|CDD\|236347	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated.	2.81236e-100
NZ_CP010323.1\|WP_003814355.1\|3884894_3886997_-\|TRAP-transporter-large-permease-subunit	gnl\|CDD\|129868	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit. The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family (TC 2.A.56)- DctM subunit TRAP-T family permeases generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterized. This system is the DctPQM system of Rhodobacter capsulatus (Forward et al., 1997). DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterized. DctQ is an integral cytoplasmic membrane protein with 4 putative transmembrane a-helical spanners (TMSs). DctM is a second integral cytoplasmic membrane protein with 12 putative TMSs. These proteins have been shown to be both necessary and sufficient for the proton motive force-dependent uptake of dicarboxylates into R. capsulatus. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.77055e-96
NZ_CP010323.1\|WP_003814363.1\|3890019_3890430_-\|4-carboxymuconolactone-decarboxylase	gnl\|CDD\|131478	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus. [Energy metabolism, Other].	1.36265e-47
NZ_CP010323.1\|WP_003814356.1\|3887167_3888211_+\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270320	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold. DctP6 and DctP7 groups of the TRAP transporters that involved in pyroglutamic acid transport. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.99378e-85
NZ_CP010323.1\|WP_003814358.1\|3888254_3888998_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	5.58304e-45
NZ_CP010323.1\|WP_033461782.1\|3875033_3876923_+\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NZ_CP010323.1\|WP_010929706.1\|3872313_3872850_+\|bifunctional-alanine-racemase/tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|223873	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only].	2.28113e-54
NZ_CP010323.1\|WP_010929709.1\|3867690_3868590_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176107	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate-domain of LysR-type transcriptional regulators, OccR and NocR, involved in the catabolism of opines and that of LysR for lysine biosynthesis which clustered together in phylogenetic trees. Opines, such as octopine and nopaline, are low molecular weight compounds found in plant crown gall tumors that are produced by the parasitic bacterium Agrobacterium. There are at least 30 different opines identified so far. Opines are utilized by tumor-colonizing bacteria as a source of carbon, nitrogen, and energy. NocR and OccR belong to the family of LysR-type transcriptional regulators that positively regulates the catabolism of nopaline and octopine, respectively. Both nopaline and octopalin are arginine derivatives. In Agrobacterium tumefaciens, NocR regulates expression of the divergently transcribed nocB and nocR genes of the nopaline catabolism (noc) region. OccR protein activates the occQ operon of the Ti plasmid in response to octopine. This operon encodes proteins required for the uptake and catabolism of octopine. The occ operon also encodes the TraR protein, which is a quorum-sensing transcriptional regulator of the Ti plasmid tra regulon. LysR is the transcriptional activator of lysA gene encoding diaminopimelate decarboxylase, an enzyme that catalyses the decarboxylation of diaminopimelate to produce lysine. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.62875e-38
NZ_CP010323.1\|WP_010929707.1\|3870770_3872162_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP010323.1\|WP_010929702.1\|3880665_3882021_+\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|130997	TIGR01942, pcnB, poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).	4.58369e-147
NZ_CP010323.1\|WP_003814351.1\|3882527_3883484_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	6.01101e-118

>NZ_CP010323.1|WP_003814337.1|3876919_3877861_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MTPRAIICLAGPTAAGKSASTLALAQRWPLEIINVDSATIYRGMDIGTAKPSAAERAQVPQHLLDIRDPAQSYSAAEFRADALRLIAEIHARGRIPLLAGGTMLYYKALREGLDDLPQADPALRAELEARAARLGWPALHAELALLDPATAARLSPNDSQRIQRALEICRLAGQPMSALLQGERRGDAPSPYRYVTLSLEPSERAALHARIAQRFDAMLAAGLVEEVRGLHARPDLHPGLPSVRCVGYRQMWSYLDGDIDLDTAREQGVAATRQLAKRQLTWLRAQPERVIIDCLAGDAVARTVDAMARALPD
>NZ_CP010323.1|WP_033461782.1|3875033_3876923_+|DNA-mismatch-repair-endonuclease-MutL
MSDRRPIATLPDLLISQIAAGEVIERPASVLKEILENAIDAGARAIEVRLEGGGIRRIAVTDDGSGIPPEELPLALTRHATSKIRSLDELESVASMGFRGEALASIASVADLTIISRTRGAEHAWQIDGGSLQVSPASGPPGTTIDVRQLFDRVPARRKFLRSEATEFGHCVDAMERIALAHPEVAFRLFHHDRAQRQWLPADHGQRIRDVLGAEFVGHVLPVLAAAGAIALMGMVTRPTAARARADRQYLYVNGRFVRDRTVSHALRSAYADVLHGDRQPAYVLYLDIDPGAVDVNVHPAKHEVRFRDSGAVHRFVSQVVGQTLAQTGGAEAVPAGVPDGAAPDTAYAGEPAAAAPGLAEPRAPYPAAYPSPGQSPYQGSPARPHTQVPFRLHGEPAGIPATDWQSLYRPLPGDAAPATTALRAAPATPLPTADEHPLGQALAQLHGIYILAQNSRGLVLVDMHAAHERVVYEQLKRALDDRALPRQDLLVPVVFHAAEKDVALVEEHETQLNELGFEMRPSGPASIAVRSVPALLARGDIESLARAVLRDLGAVGVSRLLTEQRNELLSTMACHGSVRANRRLTLEEMNALLRQMEITERADQCNHGRPTWVQWSVNDLDKLFLRGQ
>NZ_CP010323.1|WP_003814332.1|3874308_3874947_-|membrane-protein
MLDFFNMVLHIDQTLGIWVEQYGVWVYLVLFLIVFAETGLVVLPFLPGDSLLFIAGAFGATGHMDPVLTAALLIVAAISGNTVNYTIGRYIGPRVFSMNLRFLDRNALMRTHAFYEKHGGKTIVMSRFIPVIRTFAPFVAGVADMRLARFQLFNIGGALLWVISLVAAGYFFGNIPLVREHLNTIVLIGLGAAIVPVVIGALVRLLQVRRGQ
>NZ_CP010323.1|WP_019247543.1|3872780_3874166_+|N-acetylmuramoyl-L-alanine-amidase
MVERDCPPAHGALSPRAAARRRLISVAATLLVLPVVPRLAHAATILAVRTWPADEYTRVTLELDSELKAEHFTLENPHRLVVDIEGLSVNAALNDLVSKVRHDDPYIQGLRVAQNRPNVVRLVFDLKQSVAPQVFTLKPVADYQYRLVLDLYPKVAQDPLMAILNKQSGPDVDDPLARVLDEIARNQPAPDQPAAPLARGQEPAPALPAPPIKPLPAPGRSASRKRMLTIALDPGHGGEDPGAIGRSGLREKDVVLRIARRLKTLIDAQPYMRAYLTRDDDYFVPLHVRVQKARRVRADLFVSIHADAFIKPTANGSSVFALSERGASSTQARWLADKENAADLIGGVNLGSHDRQVAKVLLDLSTTAQINDSLKVGSAFLDEIKKINRLHKNRVEQAGFAVLKAPDIPSILVETAFISNPKEEALLRSAAHQEKLAQAMMTGIDRYFTANPPLARVGDVS
>NZ_CP010323.1|WP_010929706.1|3872313_3872850_+|bifunctional-alanine-racemase/tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MSAPPTTLCLHLPDEAATENLARQLAPLVDGRRGGQPGGQIHLQGDLGAGKTAFTRALLRECGIQGRIKSPSYALLESYKVSNLYFYHLDFYRFSDSREWLDAGFRDLLRDDAVVLIEWPERAAGLLPPPDLLISLAYADQGRDASLTAHTARGQTWLNAIVPPPTARSLPAPPPADA
>NZ_CP010323.1|WP_010929707.1|3870770_3872162_-|class-II-fumarate-hydratase
MKTRTEKDTFGPIEVPEQHLWGAQTQRSLHFFAISTEKMPVPLVAAMARLKRAAAKVNAELGELDPQVADAIMRAADEVIAGKWPDEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGERGEGRKVHPNDHVNRGQSSNDTFPTAMHVAAAVEVEHRVLPALKALRGTLAAKSAAFYDIVKIGRTHLQDATPLTLGQEISGYVAQLDLAEQQIRATLAGLHQLAIGGTAVGTGLNAHPQFSAKVSAELAHDTGSAFVSAPNKFQALASHEALLFAHGALKTLAAGLMKIANDVRWLASGPRSGLGEISIPENEPGSSIMPGKVNPTQCEAVTMLAAQVMGNDVAINVGGASGNFELNVFKPLVIHNFLQSVRLLADGMVSFDKHCAAGIEPNRERITELVERSLMLVTALNPHIGYDKAAQIAKKAHKENLSLKEAALALGHLTEAQFAEWVVPGDMTNARR
>NZ_CP010323.1|WP_010929708.1|3869773_3870754_+|AEC-family-transporter
MSENSSLRRDAEAPLLSIFLPGSMSVALLVLPDFMLVALGWALRHKLGFSREFFAGTERMVYFVLFPALLFQSILRTPISAGHAMQLLQATAALMACGVALAWLAGPVLRPAPVALASAAQCGYRFNTYIGLALAASLAGGPGQTIMALIVGFAVPMANVAAVYGLARHSGNGLLRELARNPLLVSTLLSLACNLAGLSLPGPIDTVMARLGAAALALGIMCVGASLAWEGGKGHGRLIGWMLAVKLAAMPSAALGIAWALGLPALETRMLVLFSALPTASAAYVLAMRMGGDGRMVAVLISLGTLASAATIPLWLTAAAGLGAPN
>NZ_CP010323.1|WP_003814324.1|3868654_3869638_-|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugE
MNKVRTLVQAIAVATGLVAAAGAQAADAYPSKAIRVIVPFAPGGSTDIIARLVTQRMSQELGQPMVVENKGGAGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRPKDLPYDPIKDFQPVTNFANTANVVAVNPKFPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNLPSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQGSAPSGNTPEEFAKEIKEQYDWAQDVVKKQNIKLD
>NZ_CP010323.1|WP_010929709.1|3867690_3868590_+|LysR-family-transcriptional-regulator
MRLRHIEIFEAIRRTGSLTEAAAALHISQPAASKLLAHAEAQLGFKLFERVKGRLVATREAEILAPEVARLNQDLGSVRRLAASLRDRPHGHLRLGCAPALGLGLLPGVVRASRDAQPGITFDIHTHHSAELVQGLLAHELDLAITFDANNHPGLTRTSLGHTELVHLSRLPGAGTTRLQELGGETLIVLDARDASGSLLQMALDAQGLAPRVAIQVQTHYVACALAEAGCGDAVVDAITARAMLRPGMALRRLEPALRVPISVMTRSQDALSTLHHDFIERLRQACSVLQAQPAPQPE
>NZ_CP010323.1|WP_003814321.1|3865829_3867584_-|gamma-glutamyltransferase
MPLRTLLAALCAAAICQAPAWAREAPGVAREDVNPEIASARSERAQAHAQRYMIATANPLASEAGYRILRAGGSATDAIIAAQLVLNLVEPQSSGIGGGAFMVHYDRGAGELRVYDSRETAPAAARPDRFLREGKPLSYAESVNNGRAVGTPGLLRGLELAHRQHGKLPWQALFEPAIAMAEQGFAVSPRLHESIAGDKALAAQPAAARYFYGPDGQAWPVGHRLRNPEFAATLRSIAREGADAFYRGPIARDIVAAVRAHPTPGDLAEADLAGYRAVVREPVCGLYRGYRLCGAPPPSSGPLAVLQMLGELEQYPLARMRPGSVEAVHYFSEAGRLAFADRDFYVADPAFVDVPVRALLDPAYLRQRGALIRPDRSMKTALPGDPQGLLAERARDDAIEVPSTSHLVAVDAAGNVVSMTSTIEAAFGSKIFVRGFLLNNEMTDFSSSYRDPEGRLVANRVEPGKRPRSSMAPMIVFRAGKPVLALGSPGGSAIINYVAKTLVGVLDWKLDVQQAIALPNLGSRNKETELERGTALEALAPALRRMGHEVRITDFPSGIQGIVIGPHGLAGGADPRREGLALGD
>NZ_CP010323.1|WP_003814339.1|3877966_3879016_-|phosphoribosylformylglycinamidine-cyclo-ligase
MTNQHSAPLTYRDAGVDIDAGDALVDRIKPLAARTMRPGVLAGIGGFGALFEVPKKFREPVLVSGTDGVGTKLRLAFDWNRHDTVGIDLVAMSVNDILVQGAEPLYFLDYFACGKLSVDTAAAVVGGIARGCELAGCALIGGETAEMPGMYPDGEYDLAGFAVGAVDKSAIIDGKSIQPGDVVLGLASSGAHSNGYSLVRKILERAGARPDQDFHGQPLVDVVMAPTRIYVKQVLAALDRHGPAIKGLAHITGGGLLDNVPRILQPGMAAQLQRDGWEMPKLFQWLQQQGSVADAEMHRVFNCGIGMVLVVAADQADAVAATLREQGEIVNRIGEIVPQQDGMAQTVVV
>NZ_CP010323.1|WP_010929704.1|3879268_3879970_+|DnaA-regulatory-inactivator-Hda
MNRQLLLDVLPAPAPALNNYIAGPNGQALAAAHALTAGRAIYLWGPAGCGRTHLLRGLSARPEAIYIDAARAAQSLRELAEADSTAPMPRLVAVDDVHRMDDARQAGLFALYNRWRESAATGRAFALAVSGDRAPMSLPLREDLRTRLGWDLVFRLDPLSDADKLAALTAQAAERGLQLAPEVINWMLTHHERDIRKLAALLDALDRYSLATGRPITIPLLRAMLADPHSQAT
>NZ_CP010323.1|WP_010929703.1|3879966_3880665_+|HAD-IB-family-hydrolase
MTTRRLALFDLDHTLLPLDSDYQWADFLARTGRAGDPAEARRRNDDLMERYNRGELTAEQAAEFMLGLLAAHSPVELAAWHEEFMRDVIRPSLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGKVVRVNQWLAGMGLALGDFAESYFYSDSVNDVPLLEAVTRPIAANPSPGLREIAQARGWQVIDLFDHLEDAKS
>NZ_CP010323.1|WP_010929702.1|3880665_3882021_+|polynucleotide-adenylyltransferase-PcnB
MITETIRKFVGRLFAPALRGPQRIGAERHGIDRRNVSRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGRILRDNVFGSQEEDAARRDFTMNALYYDPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLNGSIDTATRQPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLRNDGLHHGLLPLLDVVLEQPGGENFVELALERTDARVRAGKTISPSFLFAALLWQLVDVRWKQLRAQGEHNIPALVQAADSVLDEQTEKLAIQRRFSSDMREIWFMQPRFERRAGKTIYRMLEQPRFRAACDFLQLRAAAGEFDSVLAQWWMDLANGDDATRAEMIEETAHLPRETGDAPAQKRRRPRRRPSNRPREPQ
>NZ_CP010323.1|WP_010929701.1|3882017_3882509_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MNGSPASTLAYVGLGASLGDAAATLRSVLAELAAAPGILACKASRLYRTAPVEAQGPDFVNAVAALDTTLAPLDLLDLLQALEQRHGRERPYRNAPRTLDLDLLLYGEQAIDHPRLSVPHPRMHERAFVLAPLCELVPALRLAQGDCAALLAALEDQAIEPLR
>NZ_CP010323.1|WP_003814351.1|3882527_3883484_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MKKRIWGTLLAAAMTVGSGAAHAGYPDKAVRIVVPFAAGGGVDALARPFAKELGDILGQSIVVENKPSNTGQIGATDVARAAADGYTLLLSSAAFATTPAFYPQVPYDPVKDFSPVMIMAAAPQVLVASNRFKAASLPDVLAQARQSDRINFALSASTGIQALATAMLAGQGGVTFMTIPYKGAGAAFMDLISGEVDLMIDNPASSLVHVRAGKLRVLATTGSKRMAILPDVPTVAETLPGFEARNWFVLAAPQGTPPAVIQKLNEASARALNTPAMRQMLERDGIDLVADSPAHAAAFLQDEIAKWGKVVKEGNLQP
>NZ_CP010323.1|WP_003814355.1|3884894_3886997_-|TRAP-transporter-large-permease-subunit
MSSIEMPAPVMPIEPAELAGASPYPLAIDQDFCLIRWMAAISRACGALATVALLLMALSMCYEIFSRYLFNAPTAWATEISGYLLVATVFFGLAAAQASNSHVQVELWIDRLSAPVRLRVELLCQWLALLFCVVLGWQMASFNVREYLNDTRDWGLLSTPQWMPELAVSVGMVVFCMSILVDIYRLSPPAQAWRRWLTPALLALLAAALVALGANAVPMAAGGRFDWGMALIVAALLACAWAWSGVRTLAHVVLVVGGCAVLYGLARGQSLGWVAFLLVASMMLLLFLGVRIGVALGLVGLFGVYFLLSRPQLSLLAERAWSSTNTFTLTAVPMFIFMGGLLLRSGITAGMFDALVRWFGRAPGGLAHASAGASAVFAAVSGSSLATAATLGKVACPDMIERGYSPRLTYGVAAAGATLGILIPPSIPMIIYGTTVGASVTHLFLAGMLPGLLLMACFMLGALVWALAVPGSAPVARAYTLREKLSASRGMVPFVAIIGAVLGSMYTGVATPTEAAAIGAVSAFVLCLVRRQLSWRALFEIAHDSAKVTALLLLIVVGAGIFSWVFDYLRLPREVVNLIQGADLSPALIVAAMVLAYLVLGMFVESIAMMLMTLPVTYPIAMSLGLDPIWFGVFLVLMIELGLITPPVGMVLFVLRSMNEKARFTDIIRGALPFVLIILLFLCLIYIYPQIVMWLPQQVK
>NZ_CP010323.1|WP_003814356.1|3887167_3888211_+|TRAP-transporter-substrate-binding-protein
MSQRFPLPRGFQAALAAAALCTASWSGAAAAQTYDLTMAVITSPGDGYSILTASVPERVAKATDGKVKVTVSDSLVPPAQIATAVREGRVDMSAALHTYLAADEPRMGIFNLPGLINNIQEYKQVCDAFWCEDTRKIWKDKWNAIVLAEGAWCTQQLFSKDPIHKVEDFKGKRLRVHNPQTAEVVNALGGKPVAMPTTEIFPALERGVIDGLFISTCVGGSLEFWRIAKNVQNWSLGPINGWAILANPDSWQKLPADVQKQVQGAMDALQQEAFGNYDTFVSNAQQEMMKKGVTFWVAPEEERAKLMQQQYIGPSYEAWNKRAKQVGFDGPAYLDRVRTTLGKSASN
>NZ_CP010323.1|WP_003814358.1|3888254_3888998_+|GntR-family-transcriptional-regulator
MPFPFCNTNRMTSPAAPEGEFKVQRVASVLRHSVTESIRNAILVGRFRPGERLPERELCEMTGVSRTLVREALRQLESEGLIVVIPHRGPVVERLSPEQARGIYQVREELEGLACQLFAEHATEPQLAALQEAFQALKRALTRGTPLEQIAAKNAFYQQLLDGAGNEALTTTLRLLNSRVMLLRSTSMQAPGRAKHSVAELSNLLQALVARDGKAARKAGSLHVRNAASVAIAILQDSLADAAATAE
>NZ_CP010323.1|WP_003814363.1|3890019_3890430_-|4-carboxymuconolactone-decarboxylase
MALRPEFQTEQFQKGLAVRRAVVGDAYVDKSLNSADDLTASLQKLVTEYCWGEVWTRPGLERKTRSFLNLAMLIALNRPNELRLHLRGAINNGVTKDEIVEVVLQAAIYCGVPAALDAMKAVREVVETMEKEGAFA

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

27381 : 70136

Synechococcus_phage(50.0%)

tRNA,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010929577.1\|27381_28332_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023995007.1\|28413_28749_-	CoA transferase	NA	NA	NA	NA
WP_010929578.1\|28773_29208_-	hypothetical protein	NA	NA	NA	NA
WP_019247164.1\|29240_30458_-	thiolase family protein	NA	NA	NA	NA
WP_010929580.1\|30463_30961_-	MaoC family dehydratase	NA	NA	NA	NA
WP_019247165.1\|31168_32104_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010929582.1\|32313_33105_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_010929583.1\|33147_34569_+	MmgE/PrpD family protein	NA	NA	NA	NA
WP_005012067.1\|34724_35675_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003814398.1\|35671_36862_-	MFS transporter	NA	NA	NA	NA
WP_010929585.1\|37111_38023_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_010929586.1\|38024_40163_+\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_003814404.1\|40159_40699_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_003814405.1\|40702_41431_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_010929587.1\|41417_42311_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_003814410.1\|42381_42777_+	lactoylglutathione lyase	NA	NA	NA	NA
WP_003814412.1\|42786_43317_+	peptide deformylase	E3SLL2	Synechococcus_phage	3.7e-12	35.4
WP_023997043.1\|43445_43745_-	DUF1974 domain-containing protein	NA	NA	NA	NA
WP_010930208.1\|43762_44713_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929589.1\|45298_45847_+	hypothetical protein	NA	NA	NA	NA
WP_003815265.1\|45818_46055_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003815255.1\|46182_47076_+	membrane protein	NA	NA	NA	NA
WP_010929590.1\|48245_49493_+	homoserine O-acetyltransferase	NA	NA	NA	NA
WP_003817748.1\|49489_50104_+	methionine biosynthesis protein MetW	NA	NA	NA	NA
WP_005012067.1\|50239_51190_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_029443813.1\|51232_52489_+	muropeptide transporter	NA	NA	NA	NA
WP_014906036.1\|52600_53665_+	porin	NA	NA	NA	NA
WP_010929592.1\|53722_54457_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA
WP_019247224.1\|54462_55053_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.2e-20	33.6
WP_003817737.1\|55077_55767_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_023852650.1\|55763_56525_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_010929594.1\|56604_57504_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005012808.1\|57597_58548_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929595.1\|59348_60575_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_010929596.1\|60574_60994_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010929597.1\|61177_62119_-	hypothetical protein	NA	NA	NA	NA
WP_019248755.1\|62542_63517_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010929599.1\|63573_64155_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_010929600.1\|64167_64470_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_029443770.1\|64588_65647_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_019247832.1\|65681_66953_-	TRAP transporter large permease	NA	NA	NA	NA
WP_010929603.1\|67582_68764_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_005012808.1\|69185_70136_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

185440 : 243944

Planktothrix_phage(22.22%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014486111.1\|185440_186391_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929608.1\|186387_188262_-	polysaccharide biosynthesis protein	A0A2P1ELS8	Moumouvirus	2.0e-23	26.9
WP_003807102.1\|189609_190314_-	DUF2837 family protein	NA	NA	NA	NA
WP_003807104.1\|190310_191417_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_010929610.1\|191678_192272_-	sugar transferase	NA	NA	NA	NA
WP_023853419.1\|192268_193456_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA
WP_010929612.1\|193518_194778_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_010929613.1\|194801_195890_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A0N9R0B2	Chrysochromulina_ericina_virus	4.8e-46	36.3
WP_010929614.1\|195897_196998_-	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2K9L0G1	Tupanvirus	3.3e-31	29.7
WP_003807114.1\|197001_197577_-	N-acetyltransferase	NA	NA	NA	NA
WP_003807115.1\|197580_198633_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_010929615.1\|198763_199771_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA
WP_010929616.1\|199772_201059_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA
WP_010929617.1\|201255_202059_-	type III pantothenate kinase	NA	NA	NA	NA
WP_010929618.1\|202055_202922_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_010929619.1\|202996_204127_+	ABC transporter permease	NA	NA	NA	NA
WP_003807131.1\|204126_204966_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	9.1e-21	32.4
WP_010930208.1\|205079_206030_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929620.1\|206947_207550_+	hypothetical protein	NA	NA	NA	NA
WP_010929621.1\|207579_208233_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003807138.1\|208365_209622_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	6.2e-66	40.5
WP_023853421.1\|209702_210569_+	D-amino acid aminotransferase	NA	NA	NA	NA
WP_003818417.1\|210644_210920_+	YbeD family protein	NA	NA	NA	NA
WP_010929623.1\|210927_211590_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_003807146.1\|211651_212653_+	lipoyl synthase	NA	NA	NA	NA
WP_003807148.1\|212667_213216_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	3.7e-47	53.4
WP_010929624.1\|213273_214170_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_010929625.1\|214166_215228_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.6e-78	44.8
WP_010929626.1\|215263_216214_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010929627.1\|217113_218307_+	cystathionine beta-lyase	NA	NA	NA	NA
WP_010929628.1\|218388_219018_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA
WP_010927242.1\|219079_219763_-	SPOR domain-containing protein	NA	NA	NA	NA
WP_023853376.1\|219772_221455_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_003815933.1\|221742_222090_+	DUF1840 domain-containing protein	NA	NA	NA	NA
WP_003815930.1\|222180_222498_+	hypothetical protein	NA	NA	NA	NA
WP_010930525.1\|222780_223797_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_003815929.1\|223872_224673_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_003815927.1\|224669_225545_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_019248181.1\|225555_226848_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010929634.1\|226890_227931_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.0e-22	33.7
WP_010929635.1\|228036_228858_-	phosphodiesterase	NA	NA	NA	NA
WP_005012067.1\|228958_229909_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_014905488.1\|230007_230913_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.8e-21	31.7
WP_003815918.1\|230909_231743_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_010929637.1\|232579_233590_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_019247800.1\|233586_233976_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_010929638.1\|234869_236123_+	amidase	NA	NA	NA	NA
WP_010929639.1\|236213_237914_-	2-isopropylmalate synthase	NA	NA	NA	NA
WP_010929640.1\|238340_238988_-	hypothetical protein	NA	NA	NA	NA
WP_050457416.1\|238986_240426_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_023853394.1\|240536_240821_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_010929512.1\|240848_241727_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005012067.1\|242993_243944_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

272726 : 318707

Diachasmimorpha_longicaudata_entomopoxvirus(14.29%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010930892.1\|272726_273677_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929659.1\|275120_276023_-	YgcG family protein	NA	NA	NA	NA
WP_003815889.1\|276000_276630_-	LemA family protein	NA	NA	NA	NA
WP_010929660.1\|276912_278343_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	5.8e-44	29.8
WP_010929661.1\|278376_279006_+	LysE family transporter	NA	NA	NA	NA
WP_003815895.1\|279054_280662_+	peptide chain release factor 3	A0A2K9L6L3	Tupanvirus	9.3e-14	37.8
WP_010929663.1\|280686_281370_+	hypothetical protein	NA	NA	NA	NA
WP_003815898.1\|281451_281928_-	bacterioferritin	NA	NA	NA	NA
WP_010929664.1\|284201_284729_+	META domain-containing protein	NA	NA	NA	NA
WP_010929665.1\|284820_285636_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA
WP_003808370.1\|285696_286431_+	sulfurtransferase	NA	NA	NA	NA
WP_010929666.1\|286468_288547_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	1.5e-27	23.6
WP_003808374.1\|288796_289069_-	hypothetical protein	NA	NA	NA	NA
WP_033446322.1\|289170_290256_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_010929668.1\|290259_292164_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA
WP_014486044.1\|292160_295835_+	DUF490 domain-containing protein	NA	NA	NA	NA
WP_010929670.1\|295895_296459_+	dCTP deaminase	S5VM63	Pseudomonas_phage	2.6e-72	75.3
WP_003808385.1\|296466_296889_-	glyoxalase	NA	NA	NA	NA
WP_010929671.1\|296916_297336_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA
WP_077274090.1\|297364_297811_-	GNAT family N-acetyltransferase	Q9AZG4	Lactococcus_phage	1.2e-08	29.4
WP_003808391.1\|297937_298435_+	hypothetical protein	NA	NA	NA	NA
WP_003808393.1\|298589_300860_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA
WP_019249381.1\|300935_302141_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_005012067.1\|302239_303190_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005012067.1\|303288_304239_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929673.1\|304341_304977_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	2.8e-83	73.8
WP_010929674.1\|304973_305867_+	ZIP family metal transporter	NA	NA	NA	NA
WP_010929675.1\|306261_307362_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_010929676.1\|307443_307818_+	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_010929677.1\|307877_310742_+	aminomethyl-transferring glycine dehydrogenase	E3SN07	Prochlorococcus_phage	1.2e-261	51.4
WP_010929678.1\|310886_311627_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_010929679.1\|311696_312908_+	CoA transferase	NA	NA	NA	NA
WP_162483239.1\|313276_313579_+	MerR family DNA-binding protein	NA	NA	NA	NA
WP_005012067.1\|313677_314628_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930048.1\|314726_315677_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003818201.1\|316225_316600_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_010929807.1\|316674_317733_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_005012067.1\|317756_318707_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

340996 : 347345

Acinetobacter_phage(16.67%)

integrase

attL 338284:338306|attR 353100:353122

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
338284:338306	attL	NA	NA	NA	NA
WP_010929843.1\|340996_341986_+\|integrase	site-specific integrase	A0A1B1P9F9	Acinetobacter_phage	4.4e-75	44.4
WP_010926403.1\|341982_342183_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010929845.1\|342295_342637_-	hypothetical protein	A0A0H5ARN8	Pseudomonas_phage	1.0e-10	45.3
WP_019247983.1\|342647_343832_-	hypothetical protein	A0A291L9X3	Bordetella_phage	1.5e-24	37.8
WP_010929847.1\|343868_344396_-	hypothetical protein	NA	NA	NA	NA
WP_010929848.1\|344453_345101_-	YqaJ viral recombinase family protein	A0A0U2BXF3	Paracoccus_phage	2.0e-31	41.4
WP_010929849.1\|345097_346084_-	DNA recombinase	H9C0R8	Aeromonas_phage	2.0e-67	57.3
WP_010926410.1\|346087_346270_-	hypothetical protein	NA	NA	NA	NA
WP_010926411.1\|346266_346644_-	hypothetical protein	NA	NA	NA	NA
WP_010929850.1\|346877_347345_-	hypothetical protein	Q3HQX1	Burkholderia_phage	2.1e-43	71.3
353100:353122	attR	NA	NA	NA	NA

DBSCAN-SWA_5

449874 : 495474

uncultured_Caudovirales_phage(25.0%)

tail,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|449874_450825_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929970.1\|452258_453545_+	membrane protein	NA	NA	NA	NA
WP_010929971.1\|453710_454019_+	FmdB family transcriptional regulator	NA	NA	NA	NA
WP_033446243.1\|454040_454685_+	DUF502 domain-containing protein	A0A2I7S9X1	Vibrio_phage	8.5e-11	28.4
WP_003807038.1\|454725_456516_+\|tRNA	aspartate--tRNA ligase	A0A1V0SAC0	Catovirus	6.5e-08	25.5
WP_010929972.1\|456628_457489_+	endonuclease	NA	NA	NA	NA
WP_077598842.1\|457485_458565_+	cardiolipin synthase ClsB	NA	NA	NA	NA
WP_005015810.1\|458544_459495_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_033461521.1\|459512_459740_+	hypothetical protein	NA	NA	NA	NA
WP_010929974.1\|459736_460621_-	DMT family transporter	NA	NA	NA	NA
WP_033446233.1\|462137_462572_-	carbon monoxide dehydrogenase	NA	NA	NA	NA
WP_039249767.1\|462534_463533_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_019247922.1\|464662_465220_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_019247923.1\|465195_465546_-	hypothetical protein	NA	NA	NA	NA
WP_003814657.1\|465714_466509_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-15	30.6
WP_010931416.1\|466505_467555_-	iron ABC transporter permease	NA	NA	NA	NA
WP_003814652.1\|467554_468244_-	tol-pal system protein YbgF	NA	NA	NA	NA
WP_003814650.1\|468330_468828_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA
WP_010931417.1\|468859_470176_-	Tol-Pal system protein TolB	NA	NA	NA	NA
WP_010931418.1\|470192_471167_-	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_003814643.1\|471203_471662_-	protein TolR	NA	NA	NA	NA
WP_003814641.1\|471661_472342_-	protein TolQ	NA	NA	NA	NA
WP_010931419.1\|472344_472773_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA
WP_003814636.1\|472825_474556_-\|tRNA	proline--tRNA ligase	A0A2K9L3R9	Tupanvirus	4.6e-11	29.4
WP_003814635.1\|474621_475194_+	RNA pyrophosphohydrolase	NA	NA	NA	NA
WP_010931420.1\|475174_475861_+	response regulator	NA	NA	NA	NA
WP_010931421.1\|476216_476888_+	SOS response-associated peptidase	Q5QF62	Pseudomonas_virus	4.7e-36	39.9
WP_010931422.1\|477216_477438_+	hypothetical protein	NA	NA	NA	NA
WP_010926433.1\|477437_477719_+	hypothetical protein	NA	NA	NA	NA
WP_010931423.1\|477715_478231_-	DUF2514 family protein	NA	NA	NA	NA
WP_010931424.1\|478230_478782_-	lysozyme	NA	NA	NA	NA
WP_010931425.1\|478760_479003_-	hypothetical protein	NA	NA	NA	NA
WP_010931426.1\|479007_479820_-	hypothetical protein	NA	NA	NA	NA
WP_010926428.1\|479819_480083_-	hypothetical protein	NA	NA	NA	NA
WP_124740660.1\|480123_480321_-	hypothetical protein	NA	NA	NA	NA
WP_010931428.1\|480301_480718_-	hypothetical protein	NA	NA	NA	NA
WP_010931429.1\|480722_484679_-	DUF1983 domain-containing protein	A0A0B5A1N2	Achromobacter_phage	3.9e-215	40.8
WP_010931430.1\|484671_485061_-	C40 family peptidase	A0A0G3EYJ9	Achromobacter_phage	3.0e-35	50.0
WP_010931431.1\|485057_485591_-	DUF1833 family protein	A5A3Q9	Burkholderia_phage	1.1e-40	46.9
WP_010931432.1\|485658_486018_-	hypothetical protein	NA	NA	NA	NA
WP_010931433.1\|486027_488640_-\|tail	phage tail tape measure protein	A0A2H4J107	uncultured_Caudovirales_phage	4.9e-105	38.6
WP_010931434.1\|488665_488956_-	DUF1799 domain-containing protein	A0A2H4JBP7	uncultured_Caudovirales_phage	3.7e-14	45.2
WP_003813412.1\|488973_489303_-	hypothetical protein	A0A2H4J121	uncultured_Caudovirales_phage	2.9e-15	44.0
WP_010931435.1\|489312_489831_-	hypothetical protein	A0A1S5R1H0	Pseudomonas_phage	5.4e-24	38.3
WP_010931436.1\|490085_490586_-	HNH endonuclease	A0A1I9SEX5	Klebsiella_phage	4.4e-31	45.1
WP_010931437.1\|490593_491016_-	DUF4128 domain-containing protein	NA	NA	NA	NA
WP_010931438.1\|491012_491411_-	hypothetical protein	I6PCW1	Cronobacter_phage	4.2e-16	38.0
WP_010931439.1\|491407_491803_-	hypothetical protein	A0A2D2W284	Stenotrophomonas_phage	7.8e-07	35.0
WP_162096760.1\|491802_491991_-	hypothetical protein	NA	NA	NA	NA
WP_019247789.1\|492004_492487_-	hypothetical protein	A0A2H4JE38	uncultured_Caudovirales_phage	1.8e-13	37.1
WP_010931442.1\|492549_492801_-	hypothetical protein	NA	NA	NA	NA
WP_010929956.1\|493475_494426_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_005013747.1\|494523_495474_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

617991 : 729556

105

Bacillus_phage(17.65%)

tRNA,protease,transposase,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076879541.1\|617991_618942_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_033446133.1\|619417_620308_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_010931496.1\|620304_621126_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_019247235.1\|621325_621817_+	CYTH domain-containing protein	NA	NA	NA	NA
WP_019247236.1\|621835_622909_+	CHAD domain-containing protein	NA	NA	NA	NA
WP_023853086.1\|622955_624059_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA
WP_003808577.1\|624134_624755_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_003808574.1\|624775_625285_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.2e-28	42.1
WP_003808570.1\|625339_625591_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.6e-18	53.4
WP_010931494.1\|625654_626788_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA
WP_003808567.1\|626795_627182_-	hypothetical protein	NA	NA	NA	NA
WP_010931493.1\|627178_629698_-	AsmA family protein	NA	NA	NA	NA
WP_003808563.1\|630126_630465_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003808562.1\|630461_630968_+	SRPBCC family protein	NA	NA	NA	NA
WP_010931492.1\|631029_631830_-	hypothetical protein	NA	NA	NA	NA
WP_010931491.1\|631940_632882_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010931490.1\|632975_634511_-	M81 family metallopeptidase	NA	NA	NA	NA
WP_010931489.1\|636190_638041_-	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-17	29.2
WP_003808549.1\|638044_638878_-	ABC transporter permease	NA	NA	NA	NA
WP_010931488.1\|638877_639819_-	ABC transporter permease	NA	NA	NA	NA
WP_010929956.1\|640129_641080_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010931487.1\|641119_642091_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_039249903.1\|642232_644521_+	NADP-dependent malic enzyme	NA	NA	NA	NA
WP_003808542.1\|644827_645736_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_010931485.1\|645790_646756_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010931484.1\|646830_648492_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA
WP_010931483.1\|648563_649274_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_005012067.1\|649422_650373_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003814152.1\|651071_651455_+	membrane protein	NA	NA	NA	NA
WP_010927005.1\|651512_652115_+	DUF2946 family protein	NA	NA	NA	NA
WP_003820995.1\|652132_652534_-	DoxX family protein	NA	NA	NA	NA
WP_010931482.1\|652649_653561_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003814161.1\|653557_654139_+	NUDIX hydrolase	NA	NA	NA	NA
WP_003814165.1\|654933_655668_+	arginyltransferase	NA	NA	NA	NA
WP_010931480.1\|655708_656758_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_003814172.1\|656905_657484_-	TIGR01841 family phasin	NA	NA	NA	NA
WP_010931479.1\|657870_658848_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA
WP_019248367.1\|658941_663336_-	dermonecrotic toxin	NA	NA	NA	NA
WP_003814178.1\|663536_664385_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_010931477.1\|664543_665356_-	competence/damage-inducible protein A	NA	NA	NA	NA
WP_005015810.1\|665411_666362_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931453.1\|666460_667261_-	EI24 domain-containing protein	NA	NA	NA	NA
WP_003814185.1\|667322_667706_+	thioredoxin family protein	NA	NA	NA	NA
WP_033446148.1\|667717_669070_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.1e-51	34.4
WP_003814188.1\|669357_669687_-	AzlD domain-containing protein	NA	NA	NA	NA
WP_033462323.1\|669689_670439_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_010931456.1\|670621_671542_+	branched-chain amino acid transaminase	NA	NA	NA	NA
WP_003814195.1\|671588_671801_+	zinc-finger domain-containing protein	NA	NA	NA	NA
WP_010931457.1\|671823_672246_+	SnoaL-like domain-containing protein	NA	NA	NA	NA
WP_010931458.1\|672262_673363_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_010931459.1\|673459_674977_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_003814203.1\|675052_675892_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.1e-66	48.9
WP_033446149.1\|675913_676786_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_003814206.1\|676876_677971_-	porin	NA	NA	NA	NA
WP_010931401.1\|678231_679182_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_005013747.1\|679280_680231_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003814209.1\|680314_680674_-	hypothetical protein	NA	NA	NA	NA
WP_010931461.1\|681055_682093_-	sodium:calcium antiporter	NA	NA	NA	NA
WP_010931462.1\|682409_683750_+	M24 family metallopeptidase	NA	NA	NA	NA
WP_010931463.1\|683759_684212_-	membrane protein	NA	NA	NA	NA
WP_003814217.1\|684308_685490_+	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA
WP_023995141.1\|685555_686581_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_003814221.1\|686621_686861_+	DNA-binding protein	NA	NA	NA	NA
WP_010931464.1\|686930_688520_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	8.7e-65	47.2
WP_010931465.1\|688519_689068_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_003814226.1\|689148_689721_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_010927008.1\|689739_690651_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA
WP_003814230.1\|690724_691693_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA
WP_010931466.1\|691815_692889_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	2.3e-08	25.7
WP_010931467.1\|692893_694714_-	DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	3.1e-74	35.3
WP_005015810.1\|694790_695741_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_033446132.1\|695829_696165_+	ASCH domain-containing protein	NA	NA	NA	NA
WP_003819076.1\|696298_696949_+	carbonic anhydrase	NA	NA	NA	NA
WP_010931468.1\|696970_698389_-	amidase	NA	NA	NA	NA
WP_019248554.1\|698458_699214_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_019247734.1\|699182_699941_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_014905407.1\|699951_700833_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_010931472.1\|700849_701557_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	8.2e-07	25.4
WP_010931473.1\|701559_702318_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.4e-14	24.4
WP_010931474.1\|702527_704270_+	nitrite/sulfite reductase	NA	NA	NA	NA
WP_010925795.1\|704262_704787_+	DUF934 domain-containing protein	NA	NA	NA	NA
WP_010931475.1\|704826_705621_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_019248926.1\|705788_706862_+	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|706960_707911_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_019247378.1\|708162_708369_-	hypothetical protein	NA	NA	NA	NA
WP_010931451.1\|708440_709052_-	S24 family peptidase	NA	NA	NA	NA
WP_023853179.1\|709606_709858_+	transcriptional regulator	NA	NA	NA	NA
WP_161633094.1\|709850_710540_+	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|710796_711747_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_019247942.1\|712386_712872_+\|transposase	transposase	C7U0W1	Enterobacteria_phage	7.3e-39	61.5
WP_010931447.1\|712858_714136_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	2.4e-150	64.7
WP_010931446.1\|714138_715557_+	DUF4055 domain-containing protein	R9TF43	Synechococcus_phage	2.2e-99	42.1
WP_010931445.1\|715585_716641_+	hypothetical protein	A0A0H5BBX3	Pseudomonas_phage	2.6e-97	50.6
WP_010931444.1\|716646_716889_+	hypothetical protein	A0A0H5AUE5	Pseudomonas_phage	5.6e-16	53.2
WP_010931443.1\|717011_717614_+	hypothetical protein	R9TF81	Synechococcus_phage	7.9e-27	43.6
WP_019248169.1\|720156_721872_+	acetolactate synthase 3 catalytic subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	9.1e-60	30.1
WP_003814006.1\|721882_722374_+	acetolactate synthase small subunit	NA	NA	NA	NA
WP_010930015.1\|722446_723463_+	ketol-acid reductoisomerase	NA	NA	NA	NA
WP_003814004.1\|723630_724410_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_003814003.1\|724428_724956_-	lipoprotein	NA	NA	NA	NA
WP_005019401.1\|724954_725161_+	hypothetical protein	NA	NA	NA	NA
WP_003814002.1\|725249_725519_+	30S ribosomal protein S15	NA	NA	NA	NA
WP_003821234.1\|725609_727769_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_003814000.1\|727889_728609_+	lipoprotein	NA	NA	NA	NA
WP_005013747.1\|728605_729556_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

970645 : 1020241

uncultured_Mediterranean_phage(50.0%)

holin,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|970645_971596_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003811933.1\|971894_972632_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA
WP_010930143.1\|973067_973391_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_003811929.1\|973425_973986_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_003811927.1\|974106_974982_+	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_003817154.1\|974994_975942_+	flagellar motor protein MotB	NA	NA	NA	NA
WP_019247393.1\|976043_976337_+	response regulator	NA	NA	NA	NA
WP_039250083.1\|976363_978421_+	chemotaxis protein CheA	NA	NA	NA	NA
WP_003811919.1\|978435_978936_+	chemotaxis protein CheW	NA	NA	NA	NA
WP_010930145.1\|979009_980716_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.4e-12	41.7
WP_010930146.1\|981579_982632_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA
WP_003811911.1\|982684_983074_+	chemotaxis protein CheY	Q56AR1	Bacillus_thuringiensis_phage	5.7e-10	33.3
WP_003817162.1\|983082_983715_+	protein phosphatase CheZ	NA	NA	NA	NA
WP_010930525.1\|983814_984831_-\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_003819773.1\|985661_986669_+	aldo/keto reductase	NA	NA	NA	NA
WP_014486064.1\|986665_988309_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA
WP_010930149.1\|988305_989193_-	CBS domain-containing protein	NA	NA	NA	NA
WP_003809396.1\|989333_989807_-	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_010930151.1\|989796_990819_-	PhoH family protein	A0A0S0MVD6	Pseudomonas_phage	8.7e-50	45.4
WP_015041211.1\|990815_992243_-\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_010930525.1\|993180_994197_-\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_003809411.1\|994528_995464_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	3.0e-41	35.5
WP_010930154.1\|995513_997394_-	protein translocase subunit SecD	NA	NA	NA	NA
WP_003809416.1\|997460_997805_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	1.0e-10	40.4
WP_010930155.1\|997949_999086_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.9e-85	44.4
WP_023853534.1\|999082_1000156_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_003809423.1\|1000313_1001750_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA
WP_010930157.1\|1001840_1002482_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_010930525.1\|1002816_1003833_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_033461720.1\|1004165_1006898_+	pertactin autotransporter	NA	NA	NA	NA
WP_010930160.1\|1006964_1008386_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003809431.1\|1008649_1009366_+	hypothetical protein	NA	NA	NA	NA
WP_003809432.1\|1009450_1009768_+	DUF883 domain-containing protein	NA	NA	NA	NA
WP_003819794.1\|1009808_1010222_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_010930161.1\|1010223_1010583_+	hypothetical protein	NA	NA	NA	NA
WP_023853525.1\|1010625_1012170_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA
WP_010930163.1\|1012253_1013084_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_010930164.1\|1013118_1014273_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_010930165.1\|1014315_1015188_+	hypothetical protein	NA	NA	NA	NA
WP_003809441.1\|1018799_1019264_+	barstar family protein	NA	NA	NA	NA
WP_005013747.1\|1019290_1020241_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

1035494 : 1102833

Catovirus(28.57%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|1035494_1036445_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_161633091.1\|1037025_1037733_+	DUF192 domain-containing protein	NA	NA	NA	NA
WP_003812707.1\|1038091_1039078_-	homoserine kinase	NA	NA	NA	NA
WP_010930178.1\|1039217_1040231_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_005012067.1\|1040227_1041178_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003812703.1\|1041290_1041749_-	CBS domain-containing protein	NA	NA	NA	NA
WP_003812701.1\|1041785_1043099_-	YihY family inner membrane protein	NA	NA	NA	NA
WP_010930180.1\|1043116_1043488_+	DUF2069 domain-containing protein	NA	NA	NA	NA
WP_010930182.1\|1045089_1045818_+	response regulator transcription factor	NA	NA	NA	NA
WP_019248112.1\|1045799_1048649_-	EAL domain-containing protein	NA	NA	NA	NA
WP_005012067.1\|1048861_1049812_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_019248175.1\|1049979_1050804_+	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.0e-08	22.7
WP_010930185.1\|1050803_1051682_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_010930186.1\|1052586_1053702_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_020699602.1\|1053730_1054525_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.2e-11	23.3
WP_010930188.1\|1054521_1056387_+	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	9.3e-50	23.3
WP_003812436.1\|1056465_1057098_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_010930189.1\|1057094_1057397_-	membrane protein	NA	NA	NA	NA
WP_010930190.1\|1057439_1058960_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	1.2e-82	36.0
WP_010926447.1\|1058966_1059722_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010926448.1\|1059751_1060856_-	peptide chain release factor 2	NA	NA	NA	NA
WP_010930191.1\|1060958_1062659_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.3e-50	28.3
WP_010930192.1\|1062640_1063618_-	hypothetical protein	NA	NA	NA	NA
WP_019247537.1\|1063627_1064908_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_003812422.1\|1064900_1065596_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	7.0e-35	38.6
WP_010928340.1\|1065629_1066457_+	TatD family hydrolase	NA	NA	NA	NA
WP_019248079.1\|1066738_1069969_+	autotransporter SphB3	NA	NA	NA	NA
WP_010930196.1\|1070704_1074631_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA
WP_029443925.1\|1074803_1077278_+	DNA internalization-related competence protein ComEC/Rec2	NA	NA	NA	NA
WP_019248398.1\|1077277_1078246_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003816844.1\|1078315_1079161_+	PHP domain-containing protein	NA	NA	NA	NA
WP_003812405.1\|1079228_1079783_+	transcription elongation factor GreB	NA	NA	NA	NA
WP_010930198.1\|1079829_1080780_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_095585339.1\|1080878_1081511_-	fimbrial protein	NA	NA	NA	NA
WP_010930200.1\|1081682_1083965_-	NADP-dependent malic enzyme	NA	NA	NA	NA
WP_010930201.1\|1084119_1086816_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA
WP_010930202.1\|1086941_1087430_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_003813631.1\|1089840_1092711_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA
WP_010930204.1\|1092756_1093971_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA
WP_003813626.1\|1094200_1095628_+	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	2.1e-41	28.1
WP_023853245.1\|1095725_1096817_+	cell division protein ZapE	NA	NA	NA	NA
WP_010930206.1\|1096829_1097588_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_003813621.1\|1097675_1098578_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005012067.1\|1098574_1099525_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930207.1\|1099654_1100638_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003813618.1\|1100692_1101415_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930208.1\|1101882_1102833_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

1457518 : 1513012

Streptococcus_virus(16.67%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010930416.1\|1457518_1458007_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_010930417.1\|1458124_1458703_+	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_010930418.1\|1458808_1459177_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_023994932.1\|1459183_1460296_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_010930419.1\|1460982_1462185_+	MFS transporter	NA	NA	NA	NA
WP_010930420.1\|1462388_1465049_+	hypothetical protein	NA	NA	NA	NA
WP_010930421.1\|1465061_1468466_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_023995689.1\|1469132_1471358_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	1.2e-43	38.5
WP_010930423.1\|1471404_1471731_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_010930424.1\|1471781_1472390_+	recombination protein RecR	NA	NA	NA	NA
WP_010931070.1\|1472488_1473439_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_005013747.1\|1473536_1474487_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930425.1\|1474556_1475321_-	hypothetical protein	NA	NA	NA	NA
WP_033446226.1\|1475317_1475854_-	hypothetical protein	NA	NA	NA	NA
WP_010930427.1\|1476020_1476872_-	membrane protein	A0A1I9SA48	Rhodococcus_phage	7.0e-37	35.3
WP_010928449.1\|1476931_1477558_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_010929577.1\|1477554_1478505_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003809954.1\|1479397_1480303_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_023994740.1\|1480320_1481442_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_010930436.1\|1481530_1482145_-	serotype 3 fimbrial subunit	NA	NA	NA	NA
WP_010930435.1\|1482804_1483992_-	cupin	NA	NA	NA	NA
WP_033446228.1\|1483988_1486586_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	1.5e-21	22.6
WP_010930433.1\|1486840_1487056_+	dodecin domain-containing protein	NA	NA	NA	NA
WP_010930432.1\|1487511_1488066_-	NAD(P)H-dependent oxidoreductase	A0A2P0ZL82	Lactobacillus_phage	1.7e-15	32.0
WP_010930431.1\|1488333_1488894_+	membrane protein	NA	NA	NA	NA
WP_023853587.1\|1489005_1490310_+	imelysin	NA	NA	NA	NA
WP_019247498.1\|1490306_1491818_+	c-type cytochrome	NA	NA	NA	NA
WP_019248041.1\|1491923_1492925_+	imelysin family protein	NA	NA	NA	NA
WP_019249265.1\|1492914_1494027_+	DUF1513 domain-containing protein	NA	NA	NA	NA
WP_005013747.1\|1494125_1495076_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003809983.1\|1495181_1496015_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_010930623.1\|1496028_1496787_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010930624.1\|1496948_1497941_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010930625.1\|1498158_1498935_-	RNA methyltransferase	NA	NA	NA	NA
WP_010930626.1\|1499042_1499825_+	inositol monophosphatase	NA	NA	NA	NA
WP_003809992.1\|1499951_1501538_+	TerC family protein	A0A0R6PEZ3	Moraxella_phage	1.9e-35	42.0
WP_010930627.1\|1501562_1502426_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_020699633.1\|1502633_1503413_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_003809999.1\|1503405_1503915_-	cyclophilin	NA	NA	NA	NA
WP_010930629.1\|1504043_1504727_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_010930630.1\|1504966_1506427_+\|tRNA	cysteine--tRNA ligase	A0A2K9L6B7	Tupanvirus	2.5e-34	27.9
WP_003820119.1\|1506446_1507091_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA
WP_003810007.1\|1507127_1508093_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_010930742.1\|1508191_1509142_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_029443761.1\|1509202_1510237_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_010930633.1\|1510336_1511602_+	aspartate kinase	NA	NA	NA	NA
WP_010929632.1\|1511995_1513012_-\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA

DBSCAN-SWA_10

1913695 : 1970993

Pseudomonas_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012808.1\|1913695_1914646_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930483.1\|1914744_1915482_-	TerC family protein	A0A0S4KZH7	Pseudomonas_phage	4.1e-41	46.6
WP_010926609.1\|1915671_1916430_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930482.1\|1916476_1917466_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010930481.1\|1917643_1918612_-	transporter	NA	NA	NA	NA
WP_010930480.1\|1920151_1921120_+	AAA family ATPase	NA	NA	NA	NA
WP_010930479.1\|1921128_1922070_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_010930478.1\|1922543_1923554_+	VWA domain-containing protein	NA	NA	NA	NA
WP_010930477.1\|1923544_1925059_+	VWA domain-containing protein	NA	NA	NA	NA
WP_039250293.1\|1925055_1926402_+	hypothetical protein	NA	NA	NA	NA
WP_010930475.1\|1926404_1927439_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA
WP_023852967.1\|1927488_1929114_+	arylsulfatase	A0A2P0VMN7	Tetraselmis_virus	2.0e-149	52.2
WP_010929591.1\|1929666_1930617_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930487.1\|1930721_1931669_+	hypothetical protein	NA	NA	NA	NA
WP_019247865.1\|1931722_1933537_-	sensor histidine kinase	NA	NA	NA	NA
WP_010930489.1\|1933529_1934204_-	response regulator transcription factor	NA	NA	NA	NA
WP_023995112.1\|1934333_1937408_+	autotransporter SphB2	NA	NA	NA	NA
WP_019247905.1\|1937421_1937721_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010930492.1\|1938035_1938659_-	glutathione S-transferase	NA	NA	NA	NA
WP_010930493.1\|1938902_1939772_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_010930494.1\|1939749_1940694_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_019247909.1\|1940779_1941706_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_019247910.1\|1941818_1942598_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930497.1\|1942588_1943785_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_019248077.1\|1943815_1944766_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_010930499.1\|1944987_1945677_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930500.1\|1945741_1946497_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930501.1\|1946548_1947541_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010930502.1\|1947550_1948504_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003811538.1\|1948619_1949582_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_019249376.1\|1950983_1951412_+	hypothetical protein	NA	NA	NA	NA
WP_005013747.1\|1951408_1952359_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930503.1\|1952652_1953375_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.3e-87	68.2
WP_010930504.1\|1953813_1955001_-	MFS transporter	NA	NA	NA	NA
WP_010930505.1\|1955004_1955355_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010930506.1\|1957104_1958076_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010930507.1\|1958089_1958803_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930508.1\|1958807_1959725_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003811452.1\|1959831_1960128_+	hypothetical protein	NA	NA	NA	NA
WP_065465821.1\|1960226_1961177_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930509.1\|1962335_1965269_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA
WP_003810969.1\|1965268_1965613_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA
WP_004568496.1\|1965609_1967238_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA
WP_010930510.1\|1967234_1967714_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA
WP_033446177.1\|1967713_1967995_+	K+/H+ antiporter subunit F	NA	NA	NA	NA
WP_010930511.1\|1967991_1968318_+	cation:proton antiporter	NA	NA	NA	NA
WP_005013747.1\|1968473_1969424_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_019247780.1\|1969467_1970010_+	hypothetical protein	NA	NA	NA	NA
WP_005012808.1\|1970042_1970993_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

2021221 : 2086778

Lake_Baikal_phage(20.0%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076879559.1\|2021221_2022172_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010930538.1\|2022168_2022642_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_033446178.1\|2022803_2023742_+	membrane protein	NA	NA	NA	NA
WP_010930540.1\|2023743_2024952_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	3.8e-36	30.0
WP_010930541.1\|2025056_2025563_-	lipoprotein signal peptidase	NA	NA	NA	NA
WP_010930542.1\|2025565_2028427_-\|tRNA	isoleucine--tRNA ligase	A0A1V0SJ93	Klosneuvirus	1.0e-71	25.5
WP_010930543.1\|2028416_2029382_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_076879560.1\|2029441_2031442_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	9.7e-21	33.0
WP_005012067.1\|2031540_2032491_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930545.1\|2032487_2032862_-	hypothetical protein	NA	NA	NA	NA
WP_003812548.1\|2033123_2034332_+	aminotransferase	NA	NA	NA	NA
WP_003812546.1\|2034328_2036629_+	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	9.9e-110	35.9
WP_010926400.1\|2036681_2039294_-	TonB-dependent receptor	NA	NA	NA	NA
WP_033446179.1\|2039653_2041561_-	ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	1.1e-66	31.8
WP_010930547.1\|2041575_2042472_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_010930548.1\|2042478_2043618_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
WP_003812536.1\|2043617_2044439_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_010930549.1\|2046009_2046339_-	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_010930550.1\|2046721_2047978_+	autotransporter Phg	NA	NA	NA	NA
WP_003812526.1\|2048054_2048336_+	membrane protein	NA	NA	NA	NA
WP_003812524.1\|2048377_2048698_+	hypothetical protein	NA	NA	NA	NA
WP_010930551.1\|2049004_2049208_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.6e-16	62.1
WP_003812519.1\|2049291_2049858_+	DUF924 family protein	NA	NA	NA	NA
WP_010930553.1\|2050203_2050404_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	7.4e-14	64.4
WP_076879561.1\|2050515_2051094_-	TIGR00645 family protein	K4K6D8	Caulobacter_phage	1.0e-23	33.7
WP_010930555.1\|2051272_2052583_+	trigger factor	NA	NA	NA	NA
WP_003812508.1\|2052585_2053239_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	6.8e-56	57.5
WP_010930556.1\|2053343_2054648_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.2e-129	53.8
WP_010930557.1\|2054836_2057290_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.5e-220	52.0
WP_019247936.1\|2057413_2058364_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010930559.1\|2058591_2059815_+	CoA transferase	NA	NA	NA	NA
WP_010930560.1\|2059880_2060852_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010930561.1\|2060918_2061320_+	MaoC family dehydratase	NA	NA	NA	NA
WP_019248062.1\|2061333_2062137_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_003812491.1\|2062133_2062565_+	hypothetical protein	NA	NA	NA	NA
WP_010930563.1\|2062561_2063719_+	thiolase	NA	NA	NA	NA
WP_010930564.1\|2063740_2064517_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930565.1\|2066729_2067398_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA
WP_003812478.1\|2067390_2068032_+	CoA transferase subunit B	NA	NA	NA	NA
WP_019248063.1\|2068066_2068798_+	hypothetical protein	NA	NA	NA	NA
WP_019247934.1\|2068815_2069028_+	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|2069598_2070549_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930566.1\|2072106_2072757_-	transcriptional repressor LexA	A0A2H4JG58	uncultured_Caudovirales_phage	3.3e-10	50.7
WP_010930567.1\|2072885_2074088_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_010930568.1\|2074165_2076202_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_010930569.1\|2076454_2076946_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_003812463.1\|2077161_2077674_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
WP_010930570.1\|2077691_2078903_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA
WP_003812460.1\|2078940_2079351_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	7.5e-53	79.0
WP_003812458.1\|2079352_2079676_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	6.8e-25	52.8
WP_003812456.1\|2079678_2080191_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_010930571.1\|2080320_2082183_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	3.0e-101	42.4
WP_003812453.1\|2082192_2082534_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_003812452.1\|2082533_2082728_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_010930572.1\|2082852_2083746_+	methylglyoxal synthase	NA	NA	NA	NA
WP_005013747.1\|2083742_2084693_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930573.1\|2084817_2085627_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_005015810.1\|2085827_2086778_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_12

2129946 : 2149841

Salmonella_phage(33.33%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|2129946_2130897_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931011.1\|2130893_2131928_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_003816758.1\|2132036_2132675_+	DedA family protein	NA	NA	NA	NA
WP_019247724.1\|2132969_2133197_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003820420.1\|2133319_2134033_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_010931070.1\|2134277_2135228_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_003816756.1\|2135422_2135872_+	dUTP diphosphatase	S4TNT3	Salmonella_phage	3.7e-45	67.2
WP_010929584.1\|2135868_2136819_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010931008.1\|2136929_2138378_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_023853496.1\|2138492_2138738_-	hypothetical protein	NA	NA	NA	NA
WP_076879566.1\|2138877_2139828_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929584.1\|2139925_2140876_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_003812834.1\|2141211_2141409_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_003812832.1\|2141424_2141784_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_010926359.1\|2141858_2142881_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.0e-26	38.6
WP_010931007.1\|2142893_2145311_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_023852697.1\|2145328_2145658_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	2.7e-13	42.2
WP_003812822.1\|2145716_2146127_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_010931005.1\|2146626_2147718_-	hypothetical protein	NA	NA	NA	NA
WP_010931004.1\|2147901_2148498_+	lipoprotein	NA	NA	NA	NA
WP_004567479.1\|2148597_2148780_-	hypothetical protein	NA	NA	NA	NA
WP_010929591.1\|2148890_2149841_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_13

2466893 : 2530958

Pseudomonas_phage(30.0%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|2466893_2467844_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931247.1\|2467942_2468806_-	shikimate dehydrogenase	NA	NA	NA	NA
WP_010931246.1\|2468802_2469702_-	TonB family protein	NA	NA	NA	NA
WP_019248069.1\|2469739_2471623_-	RNB domain-containing ribonuclease	NA	NA	NA	NA
WP_010931244.1\|2471694_2472288_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_003814955.1\|2472298_2473669_-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
WP_023853327.1\|2473751_2474300_+	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_003814953.1\|2474378_2474813_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_003814952.1\|2474902_2475352_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_003814951.1\|2475361_2476708_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_010931242.1\|2477673_2478771_+	DUF3426 domain-containing protein	NA	NA	NA	NA
WP_010931241.1\|2478782_2479724_+	carbohydrate kinase family protein	NA	NA	NA	NA
WP_010931240.1\|2479896_2480400_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_003814943.1\|2480680_2480920_+	acyl carrier protein	NA	NA	NA	NA
WP_080478561.1\|2480897_2482307_+	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA
WP_010931239.1\|2482436_2483564_+	membrane-bound O-acyltransferase	A0A125RNP0	Pseudomonas_phage	3.7e-25	30.8
WP_023853325.1\|2483583_2485038_+	D-alanine--poly(phosphoribitol) ligase	A0A2K9L3I8	Tupanvirus	7.3e-26	25.1
WP_023853329.1\|2485045_2485606_-	YggT family protein	NA	NA	NA	NA
WP_010931236.1\|2485759_2486287_-	histone H1-like DNA-binding protein	NA	NA	NA	NA
WP_003814929.1\|2486604_2487801_-	ribonucleotide-diphosphate reductase subunit beta	A0A2H4P762	Pseudomonas_phage	1.0e-33	28.9
WP_010931235.1\|2487822_2490750_-	ribonucleoside-diphosphate reductase subunit alpha	A0A2H4P767	Pseudomonas_phage	3.4e-171	43.9
WP_019247415.1\|2491055_2494118_-	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA
WP_003814925.1\|2494679_2495132_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_023998238.1\|2495333_2495843_+	lipoprotein	NA	NA	NA	NA
WP_010931233.1\|2495911_2497099_+	MFS transporter	NA	NA	NA	NA
WP_033446281.1\|2497102_2498509_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_010931231.1\|2498644_2501104_+	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_005012067.1\|2501100_2502051_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931230.1\|2502149_2502824_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010931229.1\|2503120_2504617_+	membrane protein	NA	NA	NA	NA
WP_003820592.1\|2504733_2506122_+	ATP-dependent RNA helicase DbpA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	4.6e-54	33.5
WP_003820593.1\|2506227_2506617_+	VOC family protein	NA	NA	NA	NA
WP_019248167.1\|2506628_2507321_-	cysteine hydrolase	NA	NA	NA	NA
WP_010931228.1\|2507335_2508172_-	ABC transporter permease	NA	NA	NA	NA
WP_010931227.1\|2508174_2508984_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.6e-33	37.9
WP_010931226.1\|2510240_2510915_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_023853313.1\|2510928_2511480_-	ribosome-associated protein	NA	NA	NA	NA
WP_004567741.1\|2511538_2512903_+\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_004567739.1\|2513244_2514342_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_010927106.1\|2514637_2515066_+	50S ribosomal protein L13	NA	NA	NA	NA
WP_010931224.1\|2515075_2515468_+	30S ribosomal protein S9	NA	NA	NA	NA
WP_003820599.1\|2515656_2516721_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_010931223.1\|2516757_2517504_+	membrane protein	NA	NA	NA	NA
WP_003814883.1\|2517591_2517963_+	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	4.7e-30	56.9
WP_010931222.1\|2518032_2519169_-	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_010931221.1\|2519174_2520590_-	M23 family metallopeptidase	A8ATH6	Listeria_phage	1.9e-18	46.9
WP_005012067.1\|2520681_2521632_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003814877.1\|2521899_2523129_+\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA
WP_003820605.1\|2523164_2523821_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_003814873.1\|2524037_2525285_+	serine hydroxymethyltransferase	A0A219YCZ0	Aeromonas_phage	1.1e-99	52.7
WP_003814871.1\|2525442_2525925_+	transcriptional repressor NrdR	NA	NA	NA	NA
WP_023853315.1\|2526919_2527483_-	isochorismatase family protein	NA	NA	NA	NA
WP_047122802.1\|2527688_2528813_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	3.8e-38	33.3
WP_005015810.1\|2528958_2529909_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005012067.1\|2530007_2530958_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_14

2595925 : 2729851

121

Bacillus_virus(20.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003813026.1\|2595925_2597041_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_003813022.1\|2597141_2597960_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_010931185.1\|2598057_2598669_-	glutathione S-transferase	NA	NA	NA	NA
WP_010931184.1\|2598828_2600205_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	2.2e-109	47.5
WP_003813017.1\|2600267_2600726_+	cytochrome c	NA	NA	NA	NA
WP_003813013.1\|2600810_2601506_-	cytochrome b561	NA	NA	NA	NA
WP_003813010.1\|2601567_2601849_-	hypothetical protein	NA	NA	NA	NA
WP_010931182.1\|2602411_2603164_+	DUF3053 domain-containing protein	NA	NA	NA	NA
WP_003813006.1\|2603208_2604285_+	AI-2E family transporter	NA	NA	NA	NA
WP_005012067.1\|2604281_2605232_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_014486100.1\|2605334_2605997_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_019249309.1\|2606091_2606262_+	hypothetical protein	NA	NA	NA	NA
WP_019247599.1\|2606614_2607616_+	amidase	NA	NA	NA	NA
WP_003818702.1\|2607618_2608815_+	CoA transferase	NA	NA	NA	NA
WP_014486098.1\|2608835_2609639_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_019247598.1\|2609719_2610016_+	hypothetical protein	NA	NA	NA	NA
WP_019247597.1\|2610046_2610610_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014486097.1\|2610650_2611508_+	ABC transporter permease	NA	NA	NA	NA
WP_003818698.1\|2611515_2612265_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.2e-29	33.5
WP_014486096.1\|2612286_2613159_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_014486095.1\|2613187_2613967_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_014486094.1\|2614000_2614798_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003808978.1\|2617452_2617845_+	hypothetical protein	NA	NA	NA	NA
WP_014486091.1\|2617838_2618699_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_003818691.1\|2618702_2619665_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_014486089.1\|2620441_2621131_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.8e-12	28.8
WP_010930208.1\|2621991_2622942_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931181.1\|2623054_2623924_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010926062.1\|2623994_2624690_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_010931179.1\|2624679_2625189_+	nucleoside deaminase	NA	NA	NA	NA
WP_010931178.1\|2625185_2626406_+	MFS transporter	NA	NA	NA	NA
WP_010931177.1\|2626353_2627256_-	transcriptional regulator GcvA	NA	NA	NA	NA
WP_023997744.1\|2628141_2629428_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010931176.1\|2629466_2630840_+	amidase	NA	NA	NA	NA
WP_010931175.1\|2630878_2631580_-	riboflavin synthase	NA	NA	NA	NA
WP_010931174.1\|2631878_2632868_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003809010.1\|2632968_2633430_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_010931173.1\|2633445_2633994_-	hypothetical protein	NA	NA	NA	NA
WP_010931172.1\|2634135_2635611_-	acyl--CoA ligase	Q75ZG1	Hepacivirus	3.0e-35	25.6
WP_010931171.1\|2635716_2636808_+	DUF2817 domain-containing protein	NA	NA	NA	NA
WP_010931170.1\|2636811_2637594_-	ABC transporter permease	NA	NA	NA	NA
WP_019248105.1\|2637603_2638392_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.7e-34	40.0
WP_010931168.1\|2639517_2639952_-	PaaI family thioesterase	NA	NA	NA	NA
WP_010931167.1\|2639948_2640959_-	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_003809025.1\|2641002_2641929_-	VOC family protein	NA	NA	NA	NA
WP_003809026.1\|2642215_2642584_+	DUF861 domain-containing protein	NA	NA	NA	NA
WP_005013747.1\|2642800_2643751_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931165.1\|2643795_2646222_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.2e-86	33.8
WP_010931164.1\|2646270_2646963_+	HD domain-containing protein	A0A1D6Y7U0	Golden_Marseillevirus	4.7e-07	29.9
WP_010931163.1\|2647035_2648235_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_003819549.1\|2648252_2649158_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010931162.1\|2649273_2650203_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_010931161.1\|2650228_2651575_+	MFS transporter	NA	NA	NA	NA
WP_019247888.1\|2651587_2652352_+	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	3.1e-12	26.5
WP_010931159.1\|2652365_2653148_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_005012067.1\|2653340_2654291_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931158.1\|2654351_2655461_-	porin	NA	NA	NA	NA
WP_003815281.1\|2655973_2656810_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	1.6e-33	33.3
WP_010931157.1\|2656936_2657845_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005012067.1\|2657841_2658792_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_019247492.1\|2659177_2659720_+	hypothetical protein	NA	NA	NA	NA
WP_010930176.1\|2660755_2661706_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_019247402.1\|2661947_2662316_+	hypothetical protein	NA	NA	NA	NA
WP_019248356.1\|2662361_2663486_+	hypothetical protein	NA	NA	NA	NA
WP_003820818.1\|2664620_2665361_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010931155.1\|2665464_2666085_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_010931154.1\|2666086_2668195_-	AsmA family protein	NA	NA	NA	NA
WP_003820814.1\|2668339_2668999_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_003820813.1\|2669030_2669495_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA
WP_019248355.1\|2669770_2669956_+	hypothetical protein	NA	NA	NA	NA
WP_010931153.1\|2670007_2670760_-	DNA-binding protein	NA	NA	NA	NA
WP_010931152.1\|2670766_2672029_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_023852748.1\|2672070_2673309_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_003820806.1\|2674386_2675514_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.2e-23	32.3
WP_003814524.1\|2675524_2676352_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_010931150.1\|2676338_2677205_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_010931149.1\|2678571_2678976_-	hypothetical protein	NA	NA	NA	NA
WP_033446288.1\|2679338_2680250_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003820799.1\|2680264_2680975_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_010931147.1\|2680971_2682216_+	DUF521 domain-containing protein	NA	NA	NA	NA
WP_003820797.1\|2682217_2682652_+	DUF126 domain-containing protein	NA	NA	NA	NA
WP_003814535.1\|2682680_2682986_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_010930176.1\|2683350_2684301_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931144.1\|2684832_2685630_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_019248416.1\|2685677_2686331_-	ABC transporter permease	NA	NA	NA	NA
WP_003814544.1\|2686287_2687376_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	8.7e-32	36.4
WP_003814547.1\|2687540_2689766_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA
WP_023852715.1\|2692043_2692940_+	inositol monophosphatase	NA	NA	NA	NA
WP_005012067.1\|2693060_2694011_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931141.1\|2694007_2695699_-	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	9.4e-33	28.1
WP_010931140.1\|2695760_2696957_+	amidohydrolase	NA	NA	NA	NA
WP_003814552.1\|2696970_2697849_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010929220.1\|2697955_2699002_+	YeiH family putative sulfate export transporter	NA	NA	NA	NA
WP_003814554.1\|2699065_2699476_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003814555.1\|2699486_2700959_+	magnesium transporter	NA	NA	NA	NA
WP_010931139.1\|2702101_2703253_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_003813114.1\|2703400_2704411_-	acyltransferase family protein	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	3.6e-16	24.6
WP_010931138.1\|2704581_2705547_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_033446289.1\|2705721_2706552_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_003813109.1\|2706638_2706905_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_003820295.1\|2706909_2707821_+	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_010931136.1\|2707870_2709733_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA
WP_003813103.1\|2709889_2710687_+	GTP cyclohydrolase I FolE2	NA	NA	NA	NA
WP_010926331.1\|2710906_2711287_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_003813095.1\|2711334_2711658_+	primosomal replication protein N	NA	NA	NA	NA
WP_003813094.1\|2711750_2712023_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_010931135.1\|2712038_2712494_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_019248136.1\|2712610_2713447_+	hypothetical protein	NA	NA	NA	NA
WP_003813089.1\|2713443_2714817_+	replicative DNA helicase	C7BGG1	Burkholderia_phage	4.0e-135	58.2
WP_019248137.1\|2714837_2715806_-	bile acid:sodium symporter	NA	NA	NA	NA
WP_003813085.1\|2715885_2716863_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_003813082.1\|2716967_2718647_-	PhoH family protein	A0A2I7SAD7	Vibrio_phage	1.5e-70	36.9
WP_003813079.1\|2718726_2719191_-	peroxiredoxin	NA	NA	NA	NA
WP_003813077.1\|2719193_2719646_-	Xcc1710-like domain-containing protein	NA	NA	NA	NA
WP_010931132.1\|2719862_2721050_+	alanine transaminase	NA	NA	NA	NA
WP_003813074.1\|2721046_2722351_+	homoserine dehydrogenase	NA	NA	NA	NA
WP_010931131.1\|2722347_2723754_+	threonine synthase	NA	NA	NA	NA
WP_003813070.1\|2723967_2724189_+	YgdI/YgdR family lipoprotein	NA	NA	NA	NA
WP_005012808.1\|2724397_2725348_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003812917.1\|2725404_2726517_+	Ldh family oxidoreductase	NA	NA	NA	NA
WP_005012067.1\|2728900_2729851_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_15

2739497 : 2790159

uncultured_Mediterranean_phage(28.57%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|2739497_2740448_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931120.1\|2740615_2742007_+	exodeoxyribonuclease VII large subunit	A0A1V0SD82	Indivirus	1.4e-29	32.0
WP_010931119.1\|2742079_2742658_+	superoxide dismutase [Fe]	NA	NA	NA	NA
WP_019247560.1\|2742774_2744172_+	chloride channel protein	NA	NA	NA	NA
WP_010931117.1\|2744287_2745493_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
WP_003820399.1\|2745592_2746111_-	hypothetical protein	A0A1B1IUW8	uncultured_Mediterranean_phage	5.1e-14	42.2
WP_003812875.1\|2746205_2746451_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-20	76.6
WP_003820400.1\|2746678_2746993_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.2e-10	43.8
WP_023853340.1\|2747091_2752272_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA
WP_010931115.1\|2752268_2754437_+	penicillin-binding protein 1C	NA	NA	NA	NA
WP_010931114.1\|2754492_2756808_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	4.1e-164	41.9
WP_003820402.1\|2756812_2758132_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA
WP_014905522.1\|2758150_2759824_+	MCE family protein	NA	NA	NA	NA
WP_010931111.1\|2759828_2760497_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_010931110.1\|2760653_2764475_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_005015810.1\|2764805_2765756_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003812857.1\|2765777_2766923_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003820410.1\|2767071_2768001_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_003812851.1\|2767997_2769086_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_010931109.1\|2769082_2769886_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.9e-14	23.5
WP_003812846.1\|2769882_2770614_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-12	31.0
WP_010931108.1\|2770671_2771961_-	MFS transporter	NA	NA	NA	NA
WP_010931107.1\|2772057_2772660_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003812839.1\|2777213_2777552_-	P-II family nitrogen regulator	NA	NA	NA	NA
WP_010931105.1\|2778259_2778526_+	accessory factor UbiK family protein	NA	NA	NA	NA
WP_005012067.1\|2780232_2781183_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931103.1\|2781179_2782511_-	MFS transporter	NA	NA	NA	NA
WP_010931102.1\|2783771_2785772_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_003819722.1\|2785764_2786406_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA
WP_003809276.1\|2786402_2786810_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA
WP_010931101.1\|2786806_2787607_+	SURF1 family protein	NA	NA	NA	NA
WP_010931100.1\|2787681_2788386_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010931099.1\|2788417_2789212_+	N-formylglutamate deformylase	NA	NA	NA	NA
WP_010929956.1\|2789208_2790159_-\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_16

2891236 : 2960792

Planktothrix_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076879576.1\|2891236_2892187_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_003811244.1\|2892285_2892897_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_010930290.1\|2893131_2894259_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010930289.1\|2894369_2895458_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	2.2e-19	31.2
WP_003811259.1\|2895510_2896362_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA
WP_003811262.1\|2896381_2897263_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA
WP_010930288.1\|2897439_2898753_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA
WP_003811267.1\|2898963_2899797_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_010930287.1\|2899793_2900375_+	queuosine precursor transporter	A0A2I7SAW6	Vibrio_phage	9.4e-17	37.3
WP_005015810.1\|2900728_2901679_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930286.1\|2901694_2902810_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003811272.1\|2902912_2903839_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA
WP_010930285.1\|2903838_2905077_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA
WP_003811277.1\|2905073_2905841_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-14	26.4
WP_003811279.1\|2905841_2906543_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.8e-18	30.4
WP_019247793.1\|2906624_2907071_-	glutamate racemase	NA	NA	NA	NA
WP_010930283.1\|2907960_2908599_+	glutathione S-transferase	NA	NA	NA	NA
WP_005012808.1\|2909367_2910318_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003811293.1\|2910539_2910917_-	DUF423 domain-containing protein	NA	NA	NA	NA
WP_003811295.1\|2911064_2911562_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_010930291.1\|2911558_2912086_+	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_003811298.1\|2912219_2913035_+	exported protein	NA	NA	NA	NA
WP_010930292.1\|2913047_2914229_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_003811301.1\|2914276_2915170_-	phosphatidylserine decarboxylase	NA	NA	NA	NA
WP_010930293.1\|2915296_2915767_-	hypothetical protein	NA	NA	NA	NA
WP_010930294.1\|2915892_2916720_-	DUF3298 domain-containing protein	NA	NA	NA	NA
WP_003811306.1\|2916748_2917525_-	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_023852802.1\|2917521_2917797_-	hypothetical protein	NA	NA	NA	NA
WP_010930295.1\|2917811_2918276_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010930296.1\|2918287_2918989_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA
WP_003811310.1\|2919098_2919599_-	glutathione peroxidase	Q6VZR0	Canarypox_virus	4.7e-25	38.4
WP_010930297.1\|2919681_2920860_-	DUF1501 domain-containing protein	NA	NA	NA	NA
WP_003811313.1\|2922487_2922823_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_010930298.1\|2923010_2924459_+	CoA transferase	NA	NA	NA	NA
WP_023852799.1\|2924516_2924861_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	3.0e-31	58.4
WP_003811316.1\|2924967_2925507_-	peroxiredoxin	NA	NA	NA	NA
WP_023852768.1\|2926647_2927055_-	hypothetical protein	NA	NA	NA	NA
WP_019247530.1\|2927287_2927719_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA
WP_010930300.1\|2927900_2928305_-	DoxX family protein	NA	NA	NA	NA
WP_010930301.1\|2929541_2929865_+	hypothetical protein	NA	NA	NA	NA
WP_010926674.1\|2929867_2930755_-	aldo/keto reductase	NA	NA	NA	NA
WP_003811322.1\|2930787_2931213_-	universal stress protein	NA	NA	NA	NA
WP_019247534.1\|2931284_2931638_-	hypothetical protein	NA	NA	NA	NA
WP_003811324.1\|2931877_2932384_-	hypothetical protein	NA	NA	NA	NA
WP_010930302.1\|2932422_2933754_-	transcriptional regulator PtsJ	NA	NA	NA	NA
WP_003811326.1\|2933813_2934629_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_010930303.1\|2934625_2935480_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA
WP_019248253.1\|2938542_2941107_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA
WP_010930305.1\|2942473_2944228_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA
WP_010930306.1\|2944224_2946345_-	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_010930307.1\|2946349_2948545_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA
WP_010930308.1\|2948541_2951883_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA
WP_010930208.1\|2954685_2955636_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003811361.1\|2955701_2955881_-	hypothetical protein	NA	NA	NA	NA
WP_019247449.1\|2955997_2956753_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_010930310.1\|2956739_2957885_-	DUF3182 family protein	NA	NA	NA	NA
WP_005012067.1\|2958792_2959743_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929577.1\|2959841_2960792_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_17

3149933 : 3267173

Staphylococcus_phage(12.5%)

tRNA,protease,holin,integrase,transposase

attL 3213743:3213761|attR 3268441:3268459

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|3149933_3150884_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_033446265.1\|3152447_3153599_+	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_003810297.1\|3153967_3154204_+	50S ribosomal protein L28	NA	NA	NA	NA
WP_010930711.1\|3154267_3154435_+	50S ribosomal protein L33	NA	NA	NA	NA
WP_023853105.1\|3154548_3156444_-	STAS domain-containing protein	A0A2H4J153	uncultured_Caudovirales_phage	2.3e-19	27.5
WP_010931070.1\|3156607_3157558_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_019247822.1\|3157834_3158272_+	DNA-binding protein	NA	NA	NA	NA
WP_003810260.1\|3158394_3158907_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_010930709.1\|3158903_3160106_+	MFS transporter	NA	NA	NA	NA
WP_003818515.1\|3160183_3162841_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	3.3e-173	39.0
WP_003810254.1\|3162856_3163516_+	lipoprotein	NA	NA	NA	NA
WP_003818514.1\|3163518_3164574_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_010930708.1\|3164695_3165955_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.1e-91	45.7
WP_003810249.1\|3165951_3166347_+	hypothetical protein	NA	NA	NA	NA
WP_010930707.1\|3166369_3167764_-	amidase family protein	NA	NA	NA	NA
WP_010930706.1\|3167945_3168893_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA
WP_003810239.1\|3168889_3169162_+	N-acetyltransferase	NA	NA	NA	NA
WP_047122782.1\|3169226_3169670_+	hypothetical protein	NA	NA	NA	NA
WP_003820758.1\|3176199_3176676_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_010931267.1\|3176828_3177941_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA
WP_010931268.1\|3178008_3178569_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_010929235.1\|3178592_3178925_-	c-type cytochrome	NA	NA	NA	NA
WP_010931269.1\|3178908_3180597_-	dihydroxy-acid dehydratase	NA	NA	NA	NA
WP_003820749.1\|3180716_3181505_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_005012808.1\|3182212_3183163_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003814611.1\|3183607_3183919_-	cell division protein ZapA	NA	NA	NA	NA
WP_003820745.1\|3183918_3184449_-	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|3184611_3185562_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003820744.1\|3185851_3186316_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA
WP_010931270.1\|3186330_3187836_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA
WP_010931271.1\|3188089_3189697_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA
WP_003814620.1\|3189752_3190658_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_005013747.1\|3191098_3192049_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003818450.1\|3192187_3192940_+	uracil-DNA glycosylase	A0A1Y0B680	Bovine_alphaherpesvirus	2.5e-46	47.5
WP_023853440.1\|3193214_3194903_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.6e-48	32.9
WP_004566001.1\|3194922_3196182_+	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_010931274.1\|3196196_3197291_-\|tRNA	CCA tRNA nucleotidyltransferase	A0A0F6YPT7	Sinorhizobium_phage	2.4e-50	50.5
WP_010931275.1\|3197287_3199351_-	lytic transglycosylase domain-containing protein	A0A0S2SXL7	Bacillus_phage	5.3e-14	36.6
WP_010931276.1\|3199426_3200107_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_003807204.1\|3200384_3201758_+	MHS family MFS transporter	NA	NA	NA	NA
WP_003818444.1\|3201759_3202779_+	histone deacetylase family protein	A0A2K9L473	Tupanvirus	3.4e-22	31.7
WP_003818443.1\|3202842_3203814_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005013747.1\|3203878_3204829_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005013747.1\|3204927_3205878_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003807199.1\|3205976_3206819_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA
WP_010931277.1\|3206818_3207154_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_010931278.1\|3207224_3208643_-	adenosylhomocysteinase	S4VPF6	Pandoravirus	8.7e-40	29.4
WP_003807194.1\|3208922_3209963_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_003818441.1\|3210042_3210294_-	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_010925730.1\|3210404_3211568_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	5.0e-126	60.8
WP_010931279.1\|3211851_3212706_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA
WP_010931280.1\|3212702_3213593_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA
WP_003807183.1\|3213635_3214547_+	diaminopimelate epimerase	NA	NA	NA	NA
3213743:3213761	attL	NA	NA	NA	NA
WP_010931281.1\|3214573_3215266_+	DUF484 family protein	NA	NA	NA	NA
WP_010931282.1\|3215280_3216261_+	tyrosine recombinase XerC	A0A166YH27	Gordonia_phage	3.3e-14	30.5
WP_019248128.1\|3216273_3218415_-	TonB-dependent receptor	NA	NA	NA	NA
WP_003818434.1\|3218463_3219432_-	putative membrane protein	NA	NA	NA	NA
WP_019247300.1\|3219422_3220091_-	DUF1007 family protein	NA	NA	NA	NA
WP_010931286.1\|3220051_3220987_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010931287.1\|3220983_3221880_-	metal ABC transporter permease	NA	NA	NA	NA
WP_010931288.1\|3221876_3222599_-	metal ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.1e-11	30.0
WP_019248127.1\|3222589_3222754_-	hypothetical protein	NA	NA	NA	NA
WP_003807166.1\|3222927_3223431_+	transcriptional repressor	NA	NA	NA	NA
WP_010931290.1\|3223707_3224823_+	GTP-binding protein	NA	NA	NA	NA
WP_003807164.1\|3224965_3225430_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA
WP_010931291.1\|3225577_3226117_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_003807162.1\|3226138_3227473_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	3.5e-43	29.6
WP_003807161.1\|3227486_3227792_-	copper-binding protein	NA	NA	NA	NA
WP_003807159.1\|3228216_3228777_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_005012067.1\|3228875_3229826_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003808356.1\|3229841_3230345_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_023853362.1\|3230341_3231778_+	TonB-dependent receptor	NA	NA	NA	NA
WP_010931296.1\|3232497_3232977_+	membrane protein	NA	NA	NA	NA
WP_004566249.1\|3233128_3233428_+	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_010931294.1\|3233688_3234270_-	CGNR zinc finger domain-containing protein	NA	NA	NA	NA
WP_010925959.1\|3234357_3235242_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003808340.1\|3235377_3236133_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003808339.1\|3236154_3236835_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_010931293.1\|3236846_3237956_+	molybdenum ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.5e-23	34.5
WP_029443900.1\|3237962_3239441_-	phospholipase D family protein	NA	NA	NA	NA
WP_005012808.1\|3239753_3240704_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_014905963.1\|3242145_3243717_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_019247179.1\|3244049_3245903_+	hypothetical protein	NA	NA	NA	NA
WP_019248316.1\|3245947_3248512_+	autotransporter domain-containing protein	NA	NA	NA	NA
WP_010929577.1\|3248930_3249881_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_077274087.1\|3252746_3253241_-	DUF4276 family protein	NA	NA	NA	NA
WP_005013747.1\|3253257_3254208_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_076879586.1\|3254194_3254395_-	hypothetical protein	NA	NA	NA	NA
WP_010931301.1\|3254391_3255603_-	AAA family ATPase	NA	NA	NA	NA
WP_010931302.1\|3255618_3258570_-	restriction endonuclease subunit M	G8I4P9	Mycobacterium_phage	2.9e-21	25.1
WP_019247951.1\|3258571_3261328_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_010931304.1\|3261838_3262885_-	Fic family protein	NA	NA	NA	NA
WP_010931305.1\|3263226_3264354_-\|integrase	site-specific integrase	A0A1B0VMI6	Pseudomonas_phage	1.4e-48	33.6
WP_010931306.1\|3264633_3265725_-	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_010931307.1\|3265797_3266580_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_010931308.1\|3266576_3267173_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
3268441:3268459	attR	NA	NA	NA	NA

DBSCAN-SWA_18

3311331 : 3370900

Staphylococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012808.1\|3311331_3312282_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931334.1\|3313111_3313999_+	ABC transporter permease	NA	NA	NA	NA
WP_010931335.1\|3315586_3317062_+	M81 family metallopeptidase	NA	NA	NA	NA
WP_005013747.1\|3317160_3318111_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931336.1\|3318515_3319160_-	urease accessory protein UreG	NA	NA	NA	NA
WP_019247677.1\|3319184_3319769_-	urease accessory protein UreF	NA	NA	NA	NA
WP_014905506.1\|3319869_3320487_-	urease accessory protein UreE	NA	NA	NA	NA
WP_010931337.1\|3320489_3322205_-	urease subunit alpha	NA	NA	NA	NA
WP_010931338.1\|3322201_3322510_-	urease subunit beta	NA	NA	NA	NA
WP_003814828.1\|3322526_3323144_-	HupE/UreJ family protein	NA	NA	NA	NA
WP_010931340.1\|3323188_3323491_-	urease subunit gamma	NA	NA	NA	NA
WP_003814832.1\|3323591_3324446_-	urease accessory protein UreD	NA	NA	NA	NA
WP_124740609.1\|3324633_3324858_-	hypothetical protein	NA	NA	NA	NA
WP_010929281.1\|3325027_3325300_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_010929282.1\|3325717_3326125_-	GFA family protein	NA	NA	NA	NA
WP_010931341.1\|3326494_3327289_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010927102.1\|3327389_3328625_+	methylaspartate ammonia-lyase	NA	NA	NA	NA
WP_003814852.1\|3328693_3329710_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010931342.1\|3329721_3331098_+	MmgE/PrpD family protein	NA	NA	NA	NA
WP_003814856.1\|3331094_3332291_+	MFS transporter	NA	NA	NA	NA
WP_003814858.1\|3332287_3333826_-	SpoVR family protein	NA	NA	NA	NA
WP_010931343.1\|3333822_3335082_-	YeaH/YhbH family protein	NA	NA	NA	NA
WP_010931344.1\|3338738_3339833_-	CoA transferase	NA	NA	NA	NA
WP_019248373.1\|3339825_3341160_-	AMP-binding protein	NA	NA	NA	NA
WP_003808193.1\|3341113_3341797_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_019248372.1\|3341822_3342986_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_004566224.1\|3342982_3343984_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_010931346.1\|3343983_3344856_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_010931347.1\|3344852_3345602_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.9e-09	27.8
WP_010931348.1\|3345598_3346390_-	ATP-binding cassette domain-containing protein	A0A1M7XV31	Cedratvirus	1.7e-08	29.4
WP_010931349.1\|3346386_3347526_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_047122778.1\|3347801_3348587_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_014486103.1\|3348620_3349403_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_010931351.1\|3349406_3349796_+	hypothetical protein	NA	NA	NA	NA
WP_010931352.1\|3350935_3351799_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA
WP_010931353.1\|3351834_3352923_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_005013747.1\|3352919_3353870_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_019247959.1\|3354223_3357202_+	hypothetical protein	NA	NA	NA	NA
WP_003818344.1\|3358128_3359007_+	fatty acid desaturase	NA	NA	NA	NA
WP_005013747.1\|3360955_3361906_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931354.1\|3361902_3362370_-	ribonuclease HI	J9Q745	Salmonella_phage	5.6e-36	50.7
WP_010931355.1\|3362412_3363183_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_010927090.1\|3363203_3364004_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_010931356.1\|3364014_3365424_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_003814739.1\|3365518_3366304_+	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_010929632.1\|3366543_3367560_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_003814742.1\|3367667_3368060_-	OsmC family protein	NA	NA	NA	NA
WP_010931357.1\|3368197_3368878_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_023994844.1\|3368882_3369854_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_014905422.1\|3369949_3370900_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_19

3377054 : 3436352

Acinetobacter_phage(27.27%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003820957.1\|3377054_3378818_+\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	5.0e-162	50.0
WP_010931362.1\|3378929_3379808_+	septum site-determining protein MinC	NA	NA	NA	NA
WP_003814250.1\|3379920_3380736_+	septum site-determining protein MinD	NA	NA	NA	NA
WP_003814252.1\|3380739_3380991_+	cell division topological specificity factor MinE	NA	NA	NA	NA
WP_010930158.1\|3381075_3382092_-\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_003814254.1\|3382422_3382644_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_019247693.1\|3385004_3385922_-	DMT family transporter	NA	NA	NA	NA
WP_019247692.1\|3386419_3387628_-	ABC transporter permease	NA	NA	NA	NA
WP_010931365.1\|3387707_3389279_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003814275.1\|3389396_3390332_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_003814277.1\|3390520_3391465_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	8.4e-07	23.2
WP_003814283.1\|3392032_3397750_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.0e-195	39.5
WP_010931367.1\|3397755_3398883_+	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	3.8e-38	37.8
WP_003814287.1\|3398938_3399565_+	hypothetical protein	NA	NA	NA	NA
WP_010929632.1\|3399836_3400853_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_010927020.1\|3400948_3401659_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010931368.1\|3401655_3402645_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010931369.1\|3402740_3404372_+	AMP-binding protein	NA	NA	NA	NA
WP_010931370.1\|3404374_3405112_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_019247745.1\|3405267_3406140_-\|tRNA	tRNA threonylcarbamoyladenosine dehydratase	NA	NA	NA	NA
WP_023852703.1\|3406489_3407629_+	MFS transporter	NA	NA	NA	NA
WP_003814300.1\|3407625_3408285_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_003814302.1\|3408356_3408989_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_010931372.1\|3409018_3409537_+	flavin reductase family protein	NA	NA	NA	NA
WP_010931373.1\|3409547_3410657_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_003814312.1\|3410703_3411558_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_010931374.1\|3411559_3412462_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_039250731.1\|3413698_3414634_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_014905441.1\|3416389_3417379_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931375.1\|3417554_3418343_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	5.1e-66	53.0
WP_003817833.1\|3418339_3419371_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	7.4e-73	42.7
WP_003815390.1\|3419389_3419953_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.1e-65	62.1
WP_019248071.1\|3420008_3421529_-	anthranilate synthase component I	S4VNU7	Pandoravirus	3.1e-43	32.0
WP_010931377.1\|3421792_3422497_-	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_023852620.1\|3422504_3423233_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_003815381.1\|3423347_3423722_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_003815379.1\|3423764_3425054_+	murein transglycosylase A	NA	NA	NA	NA
WP_010931378.1\|3425050_3426220_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA
WP_010931379.1\|3426216_3427056_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA
WP_010931380.1\|3427115_3428051_+	D-2-hydroxyacid dehydrogenase family protein	A0A1J0F959	Only_Syngen_Nebraska_virus	6.4e-15	27.7
WP_005012067.1\|3428063_3429014_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931381.1\|3429112_3430075_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	4.6e-93	64.5
WP_003817821.1\|3430106_3430466_-	dihydroneopterin aldolase	NA	NA	NA	NA
WP_010931382.1\|3430590_3431493_+	NAD(P)/FAD-dependent oxidoreductase	G3MA85	Bacillus_virus	1.9e-08	24.0
WP_010931383.1\|3431494_3433267_-	M61 family metallopeptidase	NA	NA	NA	NA
WP_003815367.1\|3433301_3434078_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_005012808.1\|3435401_3436352_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_20

3451289 : 3516704

Planktothrix_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|3451289_3452240_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931392.1\|3452369_3453503_-	M20 family metallopeptidase	NA	NA	NA	NA
WP_010931393.1\|3453546_3454452_-	hydrolase	NA	NA	NA	NA
WP_023852622.1\|3454454_3456155_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-15	32.7
WP_010931394.1\|3456151_3457072_-	ABC transporter permease	NA	NA	NA	NA
WP_003817805.1\|3457079_3458057_-	ABC transporter permease	NA	NA	NA	NA
WP_014905459.1\|3458115_3459159_-	hypothetical protein	NA	NA	NA	NA
WP_003815317.1\|3461133_3461370_-	hypothetical protein	NA	NA	NA	NA
WP_010931396.1\|3461496_3462360_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
WP_003815315.1\|3462448_3463270_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_003815313.1\|3463349_3464087_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_010931397.1\|3464083_3465076_-	nitronate monooxygenase	NA	NA	NA	NA
WP_010931398.1\|3465228_3465852_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_010931399.1\|3465896_3467045_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_005012067.1\|3469368_3470319_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_080320275.1\|3470417_3471368_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_005012808.1\|3473797_3474748_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929184.1\|3476885_3478115_+	spore maturation protein	NA	NA	NA	NA
WP_003814419.1\|3478117_3479560_-	pyruvate kinase	NA	NA	NA	NA
WP_010931414.1\|3479664_3480810_+	glycerate kinase	W6LM47	Streptococcus_phage	1.7e-41	42.2
WP_010931413.1\|3480841_3481639_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_010931412.1\|3481663_3483223_-	chaperone SurA	NA	NA	NA	NA
WP_010931411.1\|3483219_3485592_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_010931410.1\|3485701_3486805_+	phosphotransferase	NA	NA	NA	NA
WP_010931409.1\|3486804_3487497_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_003814436.1\|3487640_3488342_+	membrane protein	NA	NA	NA	NA
WP_003814437.1\|3488326_3488704_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA
WP_005012067.1\|3489435_3490386_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003814441.1\|3490545_3491418_-	oxaloacetate decarboxylase	NA	NA	NA	NA
WP_003814443.1\|3491758_3491977_+	DUF1059 domain-containing protein	NA	NA	NA	NA
WP_010929975.1\|3492016_3493396_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_010929976.1\|3493437_3494835_-	amidase family protein	NA	NA	NA	NA
WP_010927038.1\|3494874_3496527_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.0e-16	30.8
WP_010929977.1\|3496530_3497415_-	ABC transporter permease	NA	NA	NA	NA
WP_010929978.1\|3497414_3498356_-	ABC transporter permease	NA	NA	NA	NA
WP_010929980.1\|3500220_3501036_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_003814459.1\|3501103_3501673_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_005013747.1\|3501673_3502624_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003814461.1\|3503278_3504376_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA
WP_003814462.1\|3504409_3505675_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA
WP_005012067.1\|3505832_3506783_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929982.1\|3507026_3507617_+	polyisoprenoid-binding protein	NA	NA	NA	NA
WP_010929983.1\|3507632_3510077_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_003814467.1\|3510196_3511168_-	FecR family protein	NA	NA	NA	NA
WP_023852739.1\|3511299_3511824_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_005012067.1\|3511783_3512734_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929984.1\|3512955_3515151_-	DUF1156 domain-containing protein	NA	NA	NA	NA
WP_020699729.1\|3515223_3515631_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005012808.1\|3515753_3516704_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_21

3567248 : 3622645

Lake_Baikal_phage(14.29%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|3567248_3568199_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929806.1\|3568320_3569574_+	CoA transferase	NA	NA	NA	NA
WP_010929805.1\|3569551_3570514_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010929804.1\|3570645_3571140_+	MaoC family dehydratase	NA	NA	NA	NA
WP_010929803.1\|3571139_3572372_+	dehydratase	NA	NA	NA	NA
WP_019247316.1\|3573117_3573399_+	hypothetical protein	NA	NA	NA	NA
WP_010929802.1\|3573385_3574372_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010929801.1\|3574515_3574920_+	RidA family protein	NA	NA	NA	NA
WP_010929800.1\|3575061_3578448_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_010929799.1\|3578478_3579942_+	short-chain fatty acid transporter	NA	NA	NA	NA
WP_019247315.1\|3579950_3581579_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_010929797.1\|3581664_3582324_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010929796.1\|3582353_3582794_-	hypothetical protein	NA	NA	NA	NA
WP_010929795.1\|3583304_3583508_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	5.8e-14	58.2
WP_010929794.1\|3583683_3584589_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005013747.1\|3588558_3589509_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929793.1\|3589607_3590636_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_019247419.1\|3590662_3591835_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_003814681.1\|3591960_3592938_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003814685.1\|3592948_3593920_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010929791.1\|3593986_3594772_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_003814691.1\|3594764_3595997_-	CoA transferase	NA	NA	NA	NA
WP_003814694.1\|3596192_3596948_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	2.9e-42	40.8
WP_010929789.1\|3597058_3597577_+	MgtC/SapB family protein	G3MA03	Bacillus_virus	2.1e-12	38.9
WP_010929788.1\|3599365_3600766_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_003820700.1\|3600865_3601210_+	TIGR01244 family phosphatase	NA	NA	NA	NA
WP_003814701.1\|3601298_3601769_+	universal stress protein	NA	NA	NA	NA
WP_019247421.1\|3602179_3602578_+	GTP-binding protein	E4ZFJ7	Streptococcus_phage	9.0e-19	44.3
WP_010929577.1\|3602709_3603660_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003814730.1\|3606104_3606839_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.4e-41	43.8
WP_003814728.1\|3607248_3607428_+	hypothetical protein	NA	NA	NA	NA
WP_003814726.1\|3607618_3608932_+	short-chain fatty acid transporter	NA	NA	NA	NA
WP_010929786.1\|3608947_3610459_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_010929785.1\|3610455_3611661_-	sodium/glutamate symporter	NA	NA	NA	NA
WP_022997984.1\|3611856_3612834_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_033446199.1\|3612926_3613421_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003814720.1\|3613550_3614609_+	glycosyltransferase family 2 protein	I1TED8	Salmonella_phage	2.8e-59	40.5
WP_010927086.1\|3614605_3616225_+	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_157734656.1\|3616184_3616454_-	hypothetical protein	NA	NA	NA	NA
WP_010929784.1\|3616412_3617516_+	ChbG/HpnK family deacetylase	NA	NA	NA	NA
WP_010929783.1\|3617512_3617968_+	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA
WP_003814709.1\|3617973_3618897_-	alpha/beta fold hydrolase	A0A1C9C5K3	Heterosigma_akashiwo_virus	4.8e-07	27.2
WP_010929782.1\|3618986_3619646_-	LysE family translocator	NA	NA	NA	NA
WP_047122777.1\|3619642_3620557_-	DMT family transporter	NA	NA	NA	NA
WP_010929577.1\|3620645_3621596_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005012067.1\|3621694_3622645_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_22

3848901 : 3905019

Bacillus_phage(28.57%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003815821.1\|3848901_3849351_+\|protease	ClpXP protease specificity-enhancing factor	NA	NA	NA	NA
WP_010929718.1\|3850017_3850179_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_076879590.1\|3850254_3850470_+	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|3850456_3851407_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929717.1\|3852450_3852729_-	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_010929716.1\|3853871_3854420_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.3e-28	43.1
WP_010929715.1\|3854482_3856162_-	thiol reductant ABC exporter subunit CydC	W8CYL7	Bacillus_phage	3.6e-16	27.6
WP_010929714.1\|3856158_3857910_-	thiol reductant ABC exporter subunit CydD	W8CYL7	Bacillus_phage	3.4e-09	23.8
WP_003817696.1\|3857906_3858032_-	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA
WP_004567834.1\|3858045_3859200_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_023852659.1\|3859215_3860793_-	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_010929712.1\|3860918_3861464_-	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA
WP_010929711.1\|3863703_3864684_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010929710.1\|3864697_3865822_+	CoA transferase	NA	NA	NA	NA
WP_003814321.1\|3865829_3867584_-	gamma-glutamyltransferase	NA	NA	NA	NA
WP_010929709.1\|3867690_3868590_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003814324.1\|3868654_3869638_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA
WP_010929708.1\|3869773_3870754_+	AEC family transporter	NA	NA	NA	NA
WP_010929707.1\|3870770_3872162_-	class II fumarate hydratase	NA	NA	NA	NA
WP_010929706.1\|3872313_3872850_+\|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_019247543.1\|3872780_3874166_+	N-acetylmuramoyl-L-alanine amidase	A0A2H4JCM7	uncultured_Caudovirales_phage	4.5e-17	30.3
WP_003814332.1\|3874308_3874947_-	membrane protein	NA	NA	NA	NA
WP_033461782.1\|3875033_3876923_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	2.5e-79	32.8
WP_003814337.1\|3876919_3877861_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_003814339.1\|3877966_3879016_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	5.6e-68	43.6
WP_010929704.1\|3879268_3879970_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA
WP_010929703.1\|3879966_3880665_+	HAD-IB family hydrolase	NA	NA	NA	NA
WP_010929702.1\|3880665_3882021_+	polynucleotide adenylyltransferase PcnB	A0A1B1IVF3	uncultured_Mediterranean_phage	3.4e-25	36.8
WP_010929701.1\|3882017_3882509_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_003814351.1\|3882527_3883484_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003814355.1\|3884894_3886997_-	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_003814356.1\|3887167_3888211_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_003814358.1\|3888254_3888998_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_003814363.1\|3890019_3890430_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA
WP_010929700.1\|3891379_3892177_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_005012808.1\|3892275_3893226_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_039251057.1\|3893198_3894140_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_005012067.1\|3894136_3895087_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929681.1\|3895201_3896203_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA
WP_010929682.1\|3896293_3896860_-	preprotein translocase subunit SecD	NA	NA	NA	NA
WP_010929683.1\|3897178_3899092_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA
WP_010929684.1\|3899133_3900564_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_019247308.1\|3900676_3902089_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_003818947.1\|3902105_3902801_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_005012067.1\|3903019_3903970_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005012067.1\|3904068_3905019_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_23

4036974 : 4110295

uncultured_Mediterranean_phage(16.67%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|4036974_4037925_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931563.1\|4037921_4039112_-	voltage-gated potassium channel protein	NA	NA	NA	NA
WP_010931562.1\|4039233_4039998_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA
WP_003807735.1\|4040084_4041188_-	AI-2E family transporter	NA	NA	NA	NA
WP_010930158.1\|4041379_4042396_-\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_003815102.1\|4042677_4043166_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	A0A1B1IUK5	uncultured_Mediterranean_phage	1.6e-17	34.1
WP_003817656.1\|4044509_4045190_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.5e-15	34.8
WP_010931560.1\|4045251_4046103_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_010931559.1\|4046099_4046897_-	thiazole synthase	NA	NA	NA	NA
WP_010931558.1\|4047000_4047894_-	cobalamin-binding protein	NA	NA	NA	NA
WP_010931557.1\|4047905_4049795_-	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	7.6e-07	30.8
WP_010931556.1\|4050131_4053905_+	methionine synthase	A0A140XBC7	Dickeya_phage	8.6e-10	50.8
WP_005012067.1\|4053901_4054852_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929826.1\|4055160_4055853_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	6.3e-36	41.6
WP_003818232.1\|4056226_4056727_-	SET domain-containing protein	NA	NA	NA	NA
WP_023853391.1\|4056833_4057754_+	bestrophin	NA	NA	NA	NA
WP_010929823.1\|4057770_4058247_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_010929822.1\|4058340_4060191_+	biosynthetic-type acetolactate synthase large subunit	E4WLQ6	Ostreococcus_tauri_virus	2.2e-59	30.4
WP_010929821.1\|4060246_4061005_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010929820.1\|4061032_4062466_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_003818225.1\|4062539_4063319_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010929819.1\|4063331_4064165_-	ABC transporter permease	NA	NA	NA	NA
WP_020699616.1\|4064173_4064944_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.1e-24	33.9
WP_010929818.1\|4064943_4066008_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010929817.1\|4066159_4068787_-	DNA topoisomerase III	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	6.1e-23	25.4
WP_010929816.1\|4068850_4071472_+	DUF4401 domain-containing protein	NA	NA	NA	NA
WP_003815964.1\|4072399_4072858_-	DUF494 domain-containing protein	NA	NA	NA	NA
WP_010929815.1\|4073136_4075380_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_010929814.1\|4075576_4077601_-	TRAP transporter permease	NA	NA	NA	NA
WP_019248007.1\|4077724_4078687_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_010929812.1\|4078898_4080038_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA
WP_010929811.1\|4080060_4081026_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_004565905.1\|4081221_4082412_+	acetylornithine transaminase	A0A1V0SKB7	Klosneuvirus	4.4e-21	26.7
WP_003815955.1\|4082425_4082671_+	DUF1653 domain-containing protein	NA	NA	NA	NA
WP_010929810.1\|4082699_4084721_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA
WP_003815953.1\|4084767_4086375_-	methylcrotonoyl-CoA carboxylase	A0A1B2ITV7	Pike_perch_iridovirus	5.4e-22	57.3
WP_010929808.1\|4086475_4087645_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA
WP_005013747.1\|4090526_4091477_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929699.1\|4091633_4091957_+	phosphate starvation-inducible protein	NA	NA	NA	NA
WP_023853200.1\|4092061_4093102_-	cyclase	NA	NA	NA	NA
WP_010929697.1\|4093107_4093887_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA
WP_003807672.1\|4093932_4094229_-	YciI family protein	NA	NA	NA	NA
WP_003807674.1\|4094254_4094530_-	muconolactone Delta-isomerase	NA	NA	NA	NA
WP_003819086.1\|4094586_4095231_-	CoA transferase subunit B	NA	NA	NA	NA
WP_010929696.1\|4095230_4095917_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA
WP_033446325.1\|4096115_4096898_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_010929694.1\|4096948_4097674_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010929693.1\|4097705_4099055_-	short-chain fatty acid transporter	NA	NA	NA	NA
WP_010929692.1\|4099166_4100099_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_033454003.1\|4100556_4103352_-\|protease	serine protease autotransporter SphB1	NA	NA	NA	NA
WP_023994893.1\|4103945_4106789_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
WP_010929689.1\|4106959_4107679_+	7-cyano-7-deazaguanine synthase QueC	A0A0A0RPC6	Escherichia_phage	8.0e-50	43.9
WP_010929688.1\|4107717_4108266_-	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	1.2e-21	41.7
WP_019248089.1\|4108420_4109320_+	virginiamycin B lyase	NA	NA	NA	NA
WP_005012808.1\|4109344_4110295_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010323

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection