CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014328	Halocynthiibacter arcticus strain PAMC 20958 plasmid unnamed, complete sequence	0 crisprs	WYL	0	0	4	0
NZ_CP014327	Halocynthiibacter arcticus strain PAMC 20958 chromosome, complete genome	1 crisprs	csa3,DEDDh,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,RT	0	7	9	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 2556

Ralstonia_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039003166.1\|1195_1501_-	hypothetical protein	NA	NA	NA	NA
WP_062628418.1\|2001_2556_+	recombinase family protein	A0A1W5LU24	Ralstonia_phage	8.3e-39	53.1

DBSCAN-SWA_2

12015 : 14467

Shigella_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_156477579.1\|12015_13150_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	7.7e-23	31.5
WP_039000072.1\|13215_13482_+	hypothetical protein	NA	NA	NA	NA
WP_039000070.1\|13867_14467_+	recombinase family protein	A0A219YB42	Aeromonas_phage	4.8e-24	40.9

DBSCAN-SWA_3

24039 : 32764

Halorubrum_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052274563.1\|24039_25767_-	Eco57I restriction-modification methylase domain-containing protein	Q8V6N5	Halorubrum_phage	2.3e-18	23.3
WP_039000029.1\|26134_27310_-	hypothetical protein	NA	NA	NA	NA
WP_169798778.1\|27312_28683_-	AAA family ATPase	O03951	Escherichia_phage	5.5e-15	26.2
WP_039000028.1\|28723_29635_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_039000027.1\|30114_30888_-	hypothetical protein	NA	NA	NA	NA
WP_039000026.1\|31208_31418_+	hypothetical protein	NA	NA	NA	NA
WP_039002321.1\|31516_32764_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	3.4e-88	43.8

DBSCAN-SWA_4

45158 : 46310

Staphylococcus_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039002466.1\|45158_46310_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.0e-38	36.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP014327

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014327_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014327_1

2479656-2481395

TypeI

I-C

Consensus_repeat	Method
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CRISPRCasFinder
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CRT
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	PILER-CR

26 spacers

cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP014327_1

>merge|NZ_CP014327|1|2479656-2481395|CRISPRCasFinder,CRT,PILER-CR
GTCGCCCCCTTCACGGGGGCGTGGATCGAAACGTAGAGTTCCGCGACACGTCAAAGCTATCACCCCGTCGCCCCCTTCACGGGGGCGTGGATCGAAACTCAGCAAATACCTCCCGACGCTCATAGTCGCGGCGTCGCCCCCTTCACGGGGGCGTGGATCGAAACCGTTGCACGGCATTGCAGTTGTCGAAAGCACGGCGTCGCCCCCTTCACGGGGGCGTGGATCGAAACAGGCCGCTTGCAGGTTGGTTCTGTGTCTGTCCGTCGCCCCCTTCACGGGGGCGTGGATCGAAACAGCCTCAGTCTTTCCTCCTCGGATGGTATGCGACGTCGCCCCCTTCACGGGGGCGTGGATCGAAACCGGCTCTACCACTAGCTACGCGTACTTGCATAAAGTCGCCCCCTTCACGGGGGCGTGGATCGAAACTCAGCAACGGCGGGCGGCTATCAAGCGTTTATGTCGCCCCCTTCACGGGGGCGTGGATCGAAACACATGCTTCAACTCGGCGTAGGTGATGCCACTATGTCGCCCCCTTCACGGGGGCGTGGATCGAAACCTGCAAGCACAGTCACACCGTCAGGGACTGGACTGTCGCCCCCTTCACGGGGGCGTGGATCGAAACTCCGGAGCATCAAGTTGTCGCTCCGGCAACGCGCGTCGCCCCCTTCACGGGGGCGTGGATCGAAACGTCACACCAGCCCGACCTGTCAGAAGGCTGTACGTCGCCCCCTTCACGGGGGCGTGGATCGAAACTGAATAACCTTGTTGTGCGAAATTCGATTGTTTCGTCGCCCCCTTCACGGGGGCGTGGATCGAAACACCCTTGGATATGATCAAGTCCATCGCCCCGCACGTCGCCCCCTTCACGGGGGCGTGGATCGAAACACGTCAATGACGGTATGCCGGAGAATGACGTCGCGTCGCCCCCTTCACGGGGGCGTGGATCGAAACTTTCCAAGGCAATCGCTGAACGACAAGCGGGGAAGTCGCCCCCTTCACGGGGGCGTGGATCGAAACACGCCATTGGCCGATACTGTTCAACTTGATGTGCGTCGCCCCCTTCACGGGGGCGTGGATCGAAACCTATTGTCGCGGGCGAGTGGCTTGAGGCGAGTTGGTCGCCCCCTTCACGGGGGCGTGGATCGAAACCTAAGCAAGACATACATCTTGGAGGTGGTCGAATGTCGCCCCCTTCACGGGGGCGTGGATCGAAACCACAGTCCAGCCTTTTAGCGCTCCGGACGTCACAGTCGCCCCCTTCACGGGGGCGTGGATCGAAACCCGCACCAACTGCGAAGAAAACATTCATCATGCGTCGCCCCCTTCACGGGGGCGTGGATCGAAACAACCAAAAGACGGCGCTTGCAACCGAACGCACGAGTCGCCCCCTTCACGGGGGCGTGGATCGAAACACGTTTGCTTGGTGTCGGTGGCGGTGCTGGTGCGTCGCCCCCTTCACGGGGGCGTGGATCGAAACTGACGATTGGCGAGGGTATCGCTTATTCCGAGGGCGTCGCCCCCTTCACGGGGGCGTGGATCGAAACAGCAGCGGCAACCCCTGTATTAGGCTGTCCAACTGTCGCCCCCTTCACGGGGGCGTGGATCGAAACCGGCACTCGCGGTCGGGCGGTGATGCGCTCGTCGTCGCCCCCTTCACGGGGGCGTGGATCGAAACAAGAGAAGAGGCTGCCCCACCATACAATTGCCCGTCGCCCCCTTCACGGGGGCGTGGATCGAAAC

>NZ_CP014327|1|1|2479656-2481395|CRISPRCasFinder
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	GTAGAGTTCCGCGACACGTCAAAGCTATCACCCC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	TCAGCAAATACCTCCCGACGCTCATAGTCGCGGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CGTTGCACGGCATTGCAGTTGTCGAAAGCACGGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	AGGCCGCTTGCAGGTTGGTTCTGTGTCTGTCC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	AGCCTCAGTCTTTCCTCCTCGGATGGTATGCGAC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CGGCTCTACCACTAGCTACGCGTACTTGCATAAA
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	TCAGCAACGGCGGGCGGCTATCAAGCGTTTAT
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	ACATGCTTCAACTCGGCGTAGGTGATGCCACTAT
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CTGCAAGCACAGTCACACCGTCAGGGACTGGACT
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	TCCGGAGCATCAAGTTGTCGCTCCGGCAACGCGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	GTCACACCAGCCCGACCTGTCAGAAGGCTGTAC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	TGAATAACCTTGTTGTGCGAAATTCGATTGTTTC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	ACCCTTGGATATGATCAAGTCCATCGCCCCGCAC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	ACGTCAATGACGGTATGCCGGAGAATGACGTCGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	TTTCCAAGGCAATCGCTGAACGACAAGCGGGGAA
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	ACGCCATTGGCCGATACTGTTCAACTTGATGTGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CTATTGTCGCGGGCGAGTGGCTTGAGGCGAGTTG
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CTAAGCAAGACATACATCTTGGAGGTGGTCGAAT
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CACAGTCCAGCCTTTTAGCGCTCCGGACGTCACA
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CCGCACCAACTGCGAAGAAAACATTCATCATGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	AACCAAAAGACGGCGCTTGCAACCGAACGCACGA
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	ACGTTTGCTTGGTGTCGGTGGCGGTGCTGGTGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	TGACGATTGGCGAGGGTATCGCTTATTCCGAGGGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	AGCAGCGGCAACCCCTGTATTAGGCTGTCCAACT
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CGGCACTCGCGGTCGGGCGGTGATGCGCTCGTC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	AAGAGAAGAGGCTGCCCCACCATACAATTGCCC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC

>NZ_CP014327|1|1|2479656-2481395|CRT
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	GTAGAGTTCCGCGACACGTCAAAGCTATCACCCC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	TCAGCAAATACCTCCCGACGCTCATAGTCGCGGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CGTTGCACGGCATTGCAGTTGTCGAAAGCACGGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	AGGCCGCTTGCAGGTTGGTTCTGTGTCTGTCC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	AGCCTCAGTCTTTCCTCCTCGGATGGTATGCGAC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CGGCTCTACCACTAGCTACGCGTACTTGCATAAA
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	TCAGCAACGGCGGGCGGCTATCAAGCGTTTAT
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	ACATGCTTCAACTCGGCGTAGGTGATGCCACTAT
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CTGCAAGCACAGTCACACCGTCAGGGACTGGACT
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	TCCGGAGCATCAAGTTGTCGCTCCGGCAACGCGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	GTCACACCAGCCCGACCTGTCAGAAGGCTGTAC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	TGAATAACCTTGTTGTGCGAAATTCGATTGTTTC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	ACCCTTGGATATGATCAAGTCCATCGCCCCGCAC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	ACGTCAATGACGGTATGCCGGAGAATGACGTCGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	TTTCCAAGGCAATCGCTGAACGACAAGCGGGGAA
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	ACGCCATTGGCCGATACTGTTCAACTTGATGTGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CTATTGTCGCGGGCGAGTGGCTTGAGGCGAGTTG
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CTAAGCAAGACATACATCTTGGAGGTGGTCGAAT
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CACAGTCCAGCCTTTTAGCGCTCCGGACGTCACA
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CCGCACCAACTGCGAAGAAAACATTCATCATGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	AACCAAAAGACGGCGCTTGCAACCGAACGCACGA
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	ACGTTTGCTTGGTGTCGGTGGCGGTGCTGGTGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	TGACGATTGGCGAGGGTATCGCTTATTCCGAGGGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	AGCAGCGGCAACCCCTGTATTAGGCTGTCCAACT
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CGGCACTCGCGGTCGGGCGGTGATGCGCTCGTC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	AAGAGAAGAGGCTGCCCCACCATACAATTGCCC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC

>NZ_CP014327|1|1|2479788-2481395|PILER-CR
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CGTTGCACGGCATTGCAGTTGTCGAAAGCACGGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	AGGCCGCTTGCAGGTTGGTTCTGTGTCTGTCC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	AGCCTCAGTCTTTCCTCCTCGGATGGTATGCGAC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CGGCTCTACCACTAGCTACGCGTACTTGCATAAA
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	TCAGCAACGGCGGGCGGCTATCAAGCGTTTAT
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	ACATGCTTCAACTCGGCGTAGGTGATGCCACTAT
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CTGCAAGCACAGTCACACCGTCAGGGACTGGACT
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	TCCGGAGCATCAAGTTGTCGCTCCGGCAACGCGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	GTCACACCAGCCCGACCTGTCAGAAGGCTGTAC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	TGAATAACCTTGTTGTGCGAAATTCGATTGTTTC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	ACCCTTGGATATGATCAAGTCCATCGCCCCGCAC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	ACGTCAATGACGGTATGCCGGAGAATGACGTCGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	TTTCCAAGGCAATCGCTGAACGACAAGCGGGGAA
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	ACGCCATTGGCCGATACTGTTCAACTTGATGTGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CTATTGTCGCGGGCGAGTGGCTTGAGGCGAGTTG
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CTAAGCAAGACATACATCTTGGAGGTGGTCGAAT
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CACAGTCCAGCCTTTTAGCGCTCCGGACGTCACA
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CCGCACCAACTGCGAAGAAAACATTCATCATGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	AACCAAAAGACGGCGCTTGCAACCGAACGCACGA
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	ACGTTTGCTTGGTGTCGGTGGCGGTGCTGGTGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	TGACGATTGGCGAGGGTATCGCTTATTCCGAGGGC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	AGCAGCGGCAACCCCTGTATTAGGCTGTCCAACT
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	CGGCACTCGCGGTCGGGCGGTGATGCGCTCGTC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	AAGAGAAGAGGCTGCCCCACCATACAATTGCCC
GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014327.1\|WP_039004713.1\|2476560_2477511_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP014327.1\|WP_039004710.1\|2474806_2476564_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP014327.1\|WP_039004701.1\|2466397_2467930_-\|phage-tail-sheath-family-protein	unknown	unknown	gnl\|CDD\|226028
NZ_CP014327.1\|WP_039004700.1\|2465882_2466368_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377718
NZ_CP014327.1\|WP_039004704.1\|2468423_2469131_+\|IS6-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_CP014327.1\|WP_039002462.1\|2487759_2487948_+\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	unknown
NZ_CP014327.1\|WP_039004707.1\|2471848_2474077_+\|CRISPR-associated-endonuclease-Cas3''	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP014327.1\|WP_039004705.1\|2469301_2470636_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014327.1\|WP_156477466.1\|2487135_2487324_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014327.1\|WP_039004709.1\|2474141_2474810_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP014327.1\|WP_062628249.1\|2488104_2488623_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014327.1\|WP_039004714.1\|2477510_2478137_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP014327.1\|WP_062628246.1\|2483881_2485972_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273520
NZ_CP014327.1\|WP_156477465.1\|2483180_2483336_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014327.1\|WP_062628248.1\|2487376_2487646_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014327.1\|WP_052274910.1\|2491874_2492588_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|99777
NZ_CP014327.1\|WP_179946738.1\|2478133_2479459_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP014327.1\|WP_039000386.1\|2489770_2491150_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP014327.1\|WP_052275161.1\|2481445_2483158_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|214861
NZ_CP014327.1\|WP_156477561.1\|2486065_2486977_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP014327.1\|WP_039004713.1\|2476560_2477511_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	3.83862e-145
NZ_CP014327.1\|WP_039004710.1\|2474806_2476564_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP014327.1\|WP_039004701.1\|2466397_2467930_-\|phage-tail-sheath-family-protein	gnl\|CDD\|226028	COG3497, COG3497, Phage tail sheath protein FI [General function prediction only].	6.42086e-20
NZ_CP014327.1\|WP_039004700.1\|2465882_2466368_-\|phage-tail-protein	gnl\|CDD\|377718	pfam06841, Phage_T4_gp19, T4-like virus tail tube protein gp19. This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.	3.43339e-20
NZ_CP014327.1\|WP_039004704.1\|2468423_2469131_+\|IS6-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.01298e-45
NZ_CP014327.1\|WP_039004707.1\|2471848_2474077_+\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	7.20061e-54
NZ_CP014327.1\|WP_039000386.1\|2489770_2491150_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.16858e-99
NZ_CP014327.1\|WP_039004709.1\|2474141_2474810_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	9.91555e-105
NZ_CP014327.1\|WP_039004714.1\|2477510_2478137_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	8.92245e-44
NZ_CP014327.1\|WP_062628246.1\|2483881_2485972_-\|AAA-family-ATPase	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	8.48174e-55
NZ_CP014327.1\|WP_052274910.1\|2491874_2492588_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|99777	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.	2.97199e-12
NZ_CP014327.1\|WP_179946738.1\|2478133_2479459_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP014327.1\|WP_052275161.1\|2481445_2483158_-\|recombinase-family-protein	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	1.56652e-37

>NZ_CP014327.1|WP_179946738.1|2478133_2479459_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTVYVTTEGSALRKDGENLVAEFEGAVKARVPLHMLASVVAFGPIMVSPALIGACAGAGITIVLLERNGRFAARIEGPVTGNVLLRRAQYRANEAPDEIIRSLLLGKVANQRSVLMRALRDYGNDYTPAAREGLSGACKRMVQILRNIELMPADPDALRGMEGEAAALYFSVFDHLIRAPDPEFRWSGRSRRPPLDPMNALLSFLYTLLTHDCRSAAEAVGLDPAVGFLHRDRPGRPSLALDLMEELRPVLVDRLALSLVNRRQLRAADFDTRDGGAVVMSDDARKTVLTAWQERKKEERLHPFLAEKIPFGLVPFVQAQMLARHLRGDLEGYPHGSGNSMLVLVAYDVNTIEDGGKKRLRKVARACQDYGQRVQNSVFEIEVDPAQWAKLKARLEAIIRPEFDSLRFYYLGANWTRKIEHVGAKPSADLGGPIIV
>NZ_CP014327.1|WP_039004714.1|2477510_2478137_+|CRISPR-associated-protein-Cas4
MQAAEPIPISALQHATYCLRQAALIHLERLWADNRFTAEGDVLHAVTDKGGKRLARGVRRVMALPVSSQVLGIAGICDMVEFNGDLAHPVEYKRGKPKLHRADEVQLCAQALCLEEMTGQTIPQGALYYAETHRRVVVPFDEDLRSITLAVIEDLRAALASGVTPPPTTHKSRCRACSLHELCRPAQYGRPVVAWRAARLREILGDAI
>NZ_CP014327.1|WP_039004713.1|2476560_2477511_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTAITQRHDFMLIFEVTNGNPNGDPDSGNMPRMDPETGHGLVSDVSLKRKIRNYVDLARTGEDGHHIYVQESSILNDQHRKAYRALRPDDPKVDKDAKLNPKSDDEAIKLRDWMCANFFDVRTFGAVMSTGVNCGQVKGPVQITFATSVEPIMPAEISITRMAATNEAERKQKAEGDDSDDRKENRTMGRKHIVPYGLYVAHGFISAKFAERTGFSDADLALLTEALSSMFEHDHSAARGHMSSRKLILFRHASALGNAPAHKLFDIVKIGRSVDGEFRAIDARLDNLPPARKFGDYSVKIDHDALPAGVDLIEVL
>NZ_CP014327.1|WP_039004710.1|2474806_2476564_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSVLASLARAYDRLPDAPPYGFSTEKIGFCVLLGLDGSLRDIIDLRDSDKKRTPRSMGVPASPKRSGSMPRPNFLWDNINYALGAGKISNPDDRRFDAFRNKHLEYLETVKSDELVAFCRFLTVWNPDQLTPHFDIEKLPQEGVIFGLETTYRDRFIHQVNEAREIWASQGDRWKAVAGKNAANAICLVTGQSSSIARTHPAIKGVWNAQPAGAALVSFNSDAYESYGHKQGDNASISEAAAFAYTTVLNHFLPKDSGHSIQIGDASTVFWADGSAVAAEHLFFGAFGGGDTAGKDEKATREIKTRLEMIQQGTALAQVVPDLDPSVRFHVLGLAPNAARLSVRFHYEDDFGTLIANYQNHIANLSLDPPPRDGFPPLWRYLLELAVLGKRENVPPNLAGDWMRAILTGQKYPLTLLTSTLMRLRGDGDVNALRASILKSVLIRNLKLEVPVALDPTSQNKGYVLGRLFAVYEEVQRAALGGKVNATIKDKFYGAASATPQKVFPVLDRGSANHFAKLRKQSPGRAVNLEKLLTAIMEVMEPEQEPIPVALTSAEQAMFGIGYYHQRAEAFRKRETDNDTVEIIQ
>NZ_CP014327.1|WP_039004709.1|2474141_2474810_+|type-I-C-CRISPR-associated-protein-Cas5
MTYGVRLKVWGDYGLFTRPELKVERLTYDVMTPSAARGVLEAVHWKPAIRWVIDAIHVLAPIRHQSIRRNEVGHKAPAGSLKRAMNRGDLEGLGIVADLDRQQRASTVLVRPAYLIEAHFDMTEKAGLEDNAGKHLDIFNRRAQKGQCFHQPCLGTREFAAHFEGLALDAPLPPAISETRDLGLMLWDIDHAQTSRPSMFFRAKLEQGVMQVPAPGSAGVLR
>NZ_CP014327.1|WP_039004707.1|2471848_2474077_+|CRISPR-associated-endonuclease-Cas3''
MGKNYAHSVKDRSEEQWQSLVDHLTQVAELTTFRASPLGLKQAAYAAGLYHDLGKYDPAFQRKLRGEQNRVDHSTAGASVLMASTLSQEAIPREMIAYAILGHHAGLPDRNTSAPSSMGRRLEGYADALHAGWRDDVPQTLPGLSNELMSLLESGRSNENTGAFDISVATRMLFSCLVDADYRDTEAFYAEFDGAKDREWPLLAQVLPQMITQFDTHMDQFQPTGEINALRRDILSHVRRGAGMAPGVFTLTVPTGGGKTLASLGFALDHASLHGHRRIIYAIPFTSIIDQTAAVFRDIFGQQNILEHHSAIEADKNHEGRDKLRLAMEDWAAPVVVTTNVQLFESLFAARPGRARKLHNIAGSVIILDEAQTIPRPLLLPCLAMLDSLARVFGCSIVLCTATQPAVGETLKGGLALAGRELAPDPSGLARRLKRVEIGHGGIMDNTALVSALRGVDQGLVVVNSRAHALDLWREATGLEGLFHLSTRQYAAHRRRILAQIRQRLAQGLPCRVISTSLIEAGVDVSFPMAWRAEAGLDQIVQVAGRVNRNGELLPALGQVTVFTPDGYAPPAEIAGLIGDMARMRAEVEDLQSPEAIQRYFEEVYWRVDAGLDAKGICKSFSLLGNSTNFNFRTVAEQFRMIESGMVPVIIPRDEEAIKAVAQLHEPQISSGQIARILQTHLVTVPPKARERMRACGKGDFVRPDLRADQFFVLGPELDLYAEQTGLLWEDSEYLDLSQSIL
>NZ_CP014327.1|WP_039004705.1|2469301_2470636_-|hypothetical-protein
MRNDISDLITFISQDDLWSGRLQEVVAEHLMPALDEFDLEYDDLPEVLGEPWPGVLWGCGFEDFLSRQYEDDNIVDLYLKRRGWNEPAANREYFGALRDTPVRLYEVSGVQPGVSMVLGDLLGDTKPVTVLEGSATQSLKQWDRIVVRVIAENDAHVISGALLAFSQEAVAFLIDGLSTVLSVDKNDELSLTTKQLLKCAPIFTNAWLFTALPRALSEELPELSNADGEDIMFHDLRFPFETGVTQKEVSLCLNEANFFAADGARCWTWLAPHSSKAPRERDGLMLESQTDGRTVLGHLELKGKALLINVNSSARADRVRNLVMNAAGQHLKQPLTTIRTVEQMMAEEQVESDLEDADEIPPEIARQIVQEHMDQHYRETLDAPIPALGGKSPNQAVRSKAGRAKVVDWLKKLENNSAKHRNDAIEEYDFGWMWAELGLQEHRK
>NZ_CP014327.1|WP_039004704.1|2468423_2469131_+|IS6-family-transposase
MTKRSPFRYFKTSPEIIRLAVMLYVRFPLSLRNVEDLLHERGIDVSHETVRFWWNRFGPMFASEIRRRRVKQLRSYSNWQWHLDEVFVKINGERHYLWRAVDHEGEVLESIVTKRQDKVASLKFMKKSMKRYGLPDVIVTDKLRSYGAAMKVIVNVAKQETGRWKNNRAENSHLPFRRRERAMHRFRRMRSLQKFVSVHASVFNHFNQERSLSQRDHFKNNRTAALAEWRGLCAA
>NZ_CP014327.1|WP_039004701.1|2466397_2467930_-|phage-tail-sheath-family-protein
MSYQAPGVYIKYVTDGPLTIRAASTSVAVFIGATKIGGSVAADKSVKATSITNARDYANAFTTLGSSTGPVSLPTTNDQAVDHMGMAIAGFYANGGGLAYVVSTKSDVASVAASGDFKLVNGAIELAFTAIALSAGAWGNDAAIAFSASDSGAGYVDIEITLSCHSDATTPAPKVERYLGIAIEDVADLQSSIVTFTSITTDPATELDTAVAAASATLALEDGTNSAAGAASYAEIFEELKGIDDISLITLPDLEWNTAGKPSIQAGIAHAQFMKDRMVLAQTEDAVADWANAGLPTIEYASYYHPKGTVVLKNGAGESVTATTGLTGHLAGIIARTDADKGAWTAAAGTHADVRGIAALTKSISQSRQGAINSNNVNAVRYINGTPTVWGARTRHVSGIYEYQPVMRTAFLIADSLRGALQQAVFAKNTEVLWANLKASVSGFLTGLYSQGAFQGNTPSQAFEVACGLGESMTQAEIDTGLLRVTVRFRAAKPAEFIEVQVEQLFADSL
>NZ_CP014327.1|WP_039004700.1|2465882_2466368_-|phage-tail-protein
MPDVLQLPPLPTFKFQIYFVEDGDQPIAGVTKMGALKQKTQNVAFRTGGHAWNSAAQIAAGVEYDPVTFEQGLGLDDGRFENWALAANNWKDGQAGHKPEAFRKDLRVDIMNLSGEVKLTYILASCWVSEYQAMPEFDAGNTNTLGVSSFTVQLEGWRRAS
>NZ_CP014327.1|WP_052275161.1|2481445_2483158_-|recombinase-family-protein
MTTARLRAAIYARYSSDMQNAASIEDQIRLCRIHAEREGWEIVGSYEDRAISGASILRPGIQKLLRDAEEQGFDIVVSEALDRLSRNQADIAQLYQTLSFTGVGIETLSEGTVNEMHIGLKGTMNALFLKDLAAKTWRGLDGRVEKGKSAGGKSFGYDVVRSLREDGELNRGDLAINQDEAAVILRIFEAYRDGQSPGRIADLLNREGVIGPRTPNWNKSTIHGNPKRGTGILNNMLYVGERHWNRQAYKTDPRNGKRQSRPKEVSELRIVQVPDLRIVSQDLWEAVKARQKSQALKQSDSKAWQRRKPRFLFTGLIKCGCCGGGFSTIAKDRFGCSSSRNKGTSVCTNRTTVARKDMERQILDLLSGHLMEPDLVATFAKEYIAERNRLAASKTDTRATKQKELTKVIKDQDVLVNALLAGTPAARINDRMSQLEARQKQLEQDLASTPAPASNLRIHPQMAHTYHARIKTIVAELGEPNSESEARDEIRGLIDKITVTPLPTGGKRMQPQLELHGALANILALSLGVKGKPEQQITSCEQEVMQSIVFMVAGARLGHCLREISQTQIN
>NZ_CP014327.1|WP_156477465.1|2483180_2483336_-|hypothetical-protein
MASPVVVSDGIAEQTRHDQMQALIRALARDAARVDHEEDENRNHQHHRPRT
>NZ_CP014327.1|WP_062628246.1|2483881_2485972_-|AAA-family-ATPase
MPNSKINTPAWNDFASTLIERLRHHHGAPSDASHTPSDLDELFTKFESGKDVERFGQVTRSPLRYVPARQVLIAIRLAATFKSPTAIDIALQCGALTVVRDIGVVDLTILKDVLSICFPRAPWQILAPDIVDGALSKNAQARLASAITDSFDLIEPVLIMQTHGLSLPKHLTAMVPPVFPMAPICGDVLATLLHSGHLSDQITDPVALRAALPHDDVLSGLETVTACAALRAPTLQDALIKLNAITKRDVHSTGPRLEDMTGDTLALSAARRIVDDLKLWKAGKAGWDEISRSLLLYGPPGTGKTYLARAVGNSAGLSTVNASFGAWQSAGHLGDMLREMRASFAEARRNAPCVLIIDEIDAVGSRDSDDRHGSGYRLQVINAFLAELDAISRDAGVILIGTSNHADKMDPAVLRAGRMDLKVAVPLPDAGALLAILRHHLSEDLADANLQTLARLSLGKSAADIDAAIRAARSDARHSGKRLTLAMLQDHLHIGAGSENHALLWRIAIHEAGHAIIAAALNLGAVTSLRISTDGGQVSCQFNTNESLLSDFEAQMAYSLAGRAAERLVLGDISAGAGGSDTSDLALATKAAIQIETTLGLGETGPVWHSQPNEVIRATPRLRDLVRQRVDRTEQRAATLLIQHLEPLEALARELLHHRSMRAAEIEPWLREVMPITAKPQTTAPDQPPREPLRLG
>NZ_CP014327.1|WP_156477561.1|2486065_2486977_-|GIY-YIG-nuclease-family-protein
MMTIQNTLLPIHKGSLQPHWIATAKSKGFDIVARVVDRLHLALRCHQCGALNKVRLFTLMNSQPNCSACIEQVWASDAAAAGLEFLSRDPKNRHYGLYRAACGHQLRRQFELIKRVAALQTGVRCETCHAASEIGVAQARGWHLLCPDPEGDQNYRLYKHMDCGHEQRVARVNMQTGRFGCGGCSEDWVAAPSFLYAMSFTLSNGRELVKLGFSRDPGSRLRYQLQRDMDMPCAILRQIPMSTGQDAIRLEKRLHAKLLREHADCVVDPECYRTQIRVKSEIYDARLTKTILGHLDKIEVQAA
>NZ_CP014327.1|WP_156477466.1|2487135_2487324_-|hypothetical-protein
MHFSFFSQFQIAGIGAIAMQRNAMLIQARHLMTALVALPLFDSAPEVLDDKRDQDEPPAPAF
>NZ_CP014327.1|WP_062628248.1|2487376_2487646_-|hypothetical-protein
MTKHTPITPFSAHKDPLQTPASLTFPLLLAHVADFIGAERDLEGVGHSQDPAYRLWLRDAERAQTRLTDGLRHFRDPFRSTAVSHGTAH
>NZ_CP014327.1|WP_039002462.1|2487759_2487948_+|ribbon-helix-helix-protein,-CopG-family
MSEKSKKGRPRLDTEAVNLRLPRDMIEAIDDRRRAETDLPTRPEMIRRALAQWLTMTDAPKS
>NZ_CP014327.1|WP_062628249.1|2488104_2488623_-|hypothetical-protein
MKQAPKKNRITKSTLDKVKADLERLATTPPDNFSVKESLRQSLPSINKALTNGHTLELINKTLVQNGIHISDSTLGTYLRTIQREADASTEDLSADLQESETQKDTTPSNPDTLDDGPVSDIKFTSLDEEKEPFPEIEFANEAPRSPDDDLLDKLHEKRHHKTHGDPNENEG
>NZ_CP014327.1|WP_039000386.1|2489770_2491150_+|FAD-binding-oxidoreductase
MSDIANRLRTELGVDVVPLDVPERNHHDWSGLPPVSPLALVRACSTEQVAIALRLCHETETPVVPQGGLTGISGGAHPVAGAVVLSLERMNRVLAFDAQMATLTVEAGCVLQTAQEAAQDGGLMLAVDLGARGSCTIGGVIATNAGGNQVLRYGMAREHVLGLEVVLADGTVLNSMNNMIKNNAGLDLKQLFIGTEGLMGIITKAVMRLQPRPSHSATAFCGCTDTAAAVAFLKRARADLGPALISFEVMWPSFYDLMRAGINAKHPLSEPHGVYVVIEAGGFDDNLRGQFENCLGVALEEGALNDAVIAASVREERELWAVREAVAEYGHILGPLTAFDVGLPLESIAEAVSRLEAEIAERWPGARALSYGHMGDSNLHLVVNVPQAGTDQPASALKTLVYGIVRDLGGTISAEHGIGAVKRDYLGYSRTEAEIDTMRRLKFTLDPRGILNPGKGFAP
>NZ_CP014327.1|WP_052274910.1|2491874_2492588_-|helix-turn-helix-transcriptional-regulator
MSLIRSLADTMDAGSTPLQIWKSAIECLPQFGLSKVIFMDLSQRDTPLILTNACDTWANRYRHAVLAGLDPFARNCLTGTTTQTTGIGHFEDHEHLTQVELDQIAQGSASLGVRTGMSVTIRPDINGAGVGLNLMTDYNRADFSQLRAEHEDTWRAWCQLLYAGLNAQSAKNQPLTLTKKQLDCLAYFSDGLRTSEVAYKMGLSESTVELHVRNARLSLNARTRDQAVAIAVRAKFI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	KX349284	Synechococcus phage S-RIM2 isolate W2_39_0910, complete genome	58828-58860	6	0.818
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	KX349231	Synechococcus phage S-RIM2 isolate LIS_06_1010, complete genome	58932-58964	6	0.818
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	KX349274	Synechococcus phage S-RIM2 isolate W1_03_0709, complete genome	59146-59178	6	0.818
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	KX349277	Synechococcus phage S-RIM2 isolate W1_12_0909, complete genome	58804-58836	6	0.818
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	KJ019064	Synechococcus phage ACG-2014c isolate Syn7803C98, complete genome	8037-8069	6	0.818
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	KF156339	Synechococcus phage S-MbCM25, complete genome	8037-8069	6	0.818
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NC_019444	Synechococcus phage S-MbCM6, complete genome	8038-8070	6	0.818
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP054616	Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence	285260-285292	6	0.818
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP009695	Bacillus anthracis strain RA3 plasmid pXO2, complete sequence	62206-62238	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP009542	Bacillus anthracis strain BA1015 plasmid pXO2, complete sequence	87767-87799	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP010320	Bacillus anthracis strain Canadian Bison isolate A0369 plasmid 2, complete sequence	58943-58975	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP009326	Bacillus anthracis strain Vollum 1B plasmid 2, complete sequence	87736-87768	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP009979	Bacillus anthracis strain Ames isolate BACI008 plasmid unnamed2, complete sequence	31910-31942	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_KU525621	Bacillus anthracis strain P.NO2 plasmid pXO2, complete sequence	41353-41385	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NC_014332	Bacillus cereus biovar anthracis str. CI plasmid pCI-XO2, complete sequence	42090-42122	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NC_012577	Bacillus anthracis str. CDC 684 plasmid pX02, complete sequence	39996-40028	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP015778	Bacillus anthracis strain Tangail-1 plasmid pXO2, complete sequence	41568-41600	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP018905	Bacillus anthracis strain Tyrol 4675 plasmid pXO2, complete sequence	41922-41954	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP023003	Bacillus anthracis strain 14RA5914 plasmid pX02, complete sequence	71777-71809	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_AP019733	Bacillus anthracis strain PCr plasmid PCr-pXO2	77574-77606	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_AP018445	Bacillus anthracis strain CZC5 plasmid pXO2, complete sequence	41573-41605	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP029325	Bacillus anthracis strain 17OD930 plasmid pXO2, complete sequence	29867-29899	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NC_012655	Bacillus anthracis str. A0248 plasmid pXO2, complete sequence	42611-42643	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NC_007323	Bacillus anthracis str. 'Ames Ancestor' plasmid pXO2, complete sequence	41568-41600	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP010854	Bacillus anthracis strain A1144 plasmid pXO2, complete sequence	41736-41768	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP007617	Bacillus anthracis strain 2000031021 plasmid pXO2, complete sequence	17117-17149	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP008848	Bacillus anthracis strain HYU01 plasmid pX02, complete sequence	41501-41533	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP006744	Bacillus anthracis str. SVA11 plasmid pXO2, complete sequence	41533-41565	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_AP014835	Bacillus anthracis strain Shikan-NIID plasmid pXO2	41565-41597	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP029807	Bacillus anthracis strain London_499 plasmid pX02, complete sequence	41566-41598	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NC_002146	Bacillus anthracis plasmid pXO2, complete sequence	42066-42098	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NC_017727	Bacillus anthracis str. H9401 plasmid BAP2, complete sequence	41576-41608	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP009314	Bacillus anthracis str. Turkey32 strain 35 plasmid unnamed, complete sequence	48423-48455	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP014178	Bacillus anthracis strain Stendal plasmid pXO2, complete sequence	41568-41600	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP009475	Bacillus anthracis strain Pasteur plasmid pXO2, complete sequence	64082-64114	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP009900	Bacillus anthracis strain 2002013094 plasmid pXO2, complete sequence	26574-26606	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP009339	Bacillus anthracis strain Ohio ACB plasmid 2, complete sequence	60858-60890	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP009462	Bacillus anthracis strain SK-102 plasmid pXO2, complete sequence	69169-69201	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP009698	Bacillus anthracis strain BA1035 plasmid pXO2, complete sequence	38781-38813	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP009329	Bacillus anthracis strain K3 plasmid 2, complete sequence	75849-75881	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP001972	Bacillus anthracis str. A16 plasmid pXO2, complete sequence	41566-41598	7	0.788
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP047133	Bacillus anthracis str. BF1 plasmid pXO2, complete sequence	41509-41541	7	0.788
NZ_CP014327_1	1.7\|2480082\|32\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2480082-2480113	32	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	103794-103825	8	0.75
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP020084	Blastomonas fulva strain T2 plasmid unnamed, complete sequence	131941-131973	8	0.758
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	485027-485059	8	0.758
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	MN693539	Marine virus AFVG_25M73, complete genome	31220-31252	8	0.758
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	MT276994	Aeromonas phage AhyVDH1, complete genome	12797-12829	8	0.758
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	736746-736778	8	0.758
NZ_CP014327_1	1.7\|2480082\|32\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2480082-2480113	32	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	734220-734251	9	0.719
NZ_CP014327_1	1.7\|2480082\|32\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2480082-2480113	32	NZ_CP046574	Rhodococcus sp. WAY2 plasmid pRWAY02, complete sequence	108174-108205	9	0.719
NZ_CP014327_1	1.21\|2481002\|34\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481002-2481035	34	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	526260-526293	9	0.735
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP029831	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence	364262-364294	9	0.727
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	MN693299	Marine virus AFVG_25M439, complete genome	20504-20536	9	0.727
NZ_CP014327_1	1.25\|2481266\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481266-2481298	33	NZ_CP035000	Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence	387020-387052	9	0.727
NZ_CP014327_1	1.3\|2479820\|34\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2479820-2479853	34	MN693327	Marine virus AFVG_25M484, complete genome	17387-17420	10	0.706
NZ_CP014327_1	1.13\|2480475\|34\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2480475-2480508	34	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	419621-419654	10	0.706
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	709400-709432	10	0.697
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	MN694113	Marine virus AFVG_250M153, complete genome	2028-2060	10	0.697
NZ_CP014327_1	1.8\|2480146\|34\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2480146-2480179	34	NC_020548	Azoarcus sp. KH32C plasmid pAZKH, complete sequence	378625-378658	11	0.676
NZ_CP014327_1	1.22\|2481068\|33\|NZ_CP014327\|CRISPRCasFinder,CRT,PILER-CR	2481068-2481100	33	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	95665-95697	12	0.636

1. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to KX349284 (Synechococcus phage S-RIM2 isolate W2_39_0910, complete genome) position: , mismatch: 6, identity: 0.818

acgt-ttgcttggtgtcggtggcggtgctggtgc	CRISPR spacer
-tgtatcgattgttggcggtggcggtgctggtgc	Protospacer
 .** *.* *** ** ******************

2. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to KX349231 (Synechococcus phage S-RIM2 isolate LIS_06_1010, complete genome) position: , mismatch: 6, identity: 0.818

acgt-ttgcttggtgtcggtggcggtgctggtgc	CRISPR spacer
-tgtatcgattgttggcggtggcggtgctggtgc	Protospacer
 .** *.* *** ** ******************

3. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to KX349274 (Synechococcus phage S-RIM2 isolate W1_03_0709, complete genome) position: , mismatch: 6, identity: 0.818

acgt-ttgcttggtgtcggtggcggtgctggtgc	CRISPR spacer
-tgtatcgattgttggcggtggcggtgctggtgc	Protospacer
 .** *.* *** ** ******************

4. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to KX349277 (Synechococcus phage S-RIM2 isolate W1_12_0909, complete genome) position: , mismatch: 6, identity: 0.818

acgt-ttgcttggtgtcggtggcggtgctggtgc	CRISPR spacer
-tgtatcgattgttggcggtggcggtgctggtgc	Protospacer
 .** *.* *** ** ******************

5. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to KJ019064 (Synechococcus phage ACG-2014c isolate Syn7803C98, complete genome) position: , mismatch: 6, identity: 0.818

acgtttgcttggtgtcggtggcggtgctggtgc	CRISPR spacer
aggatttgttggtggcggtggcggtggtggtgc	Protospacer
* * **  ****** *********** ******

6. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to KF156339 (Synechococcus phage S-MbCM25, complete genome) position: , mismatch: 6, identity: 0.818

acgtttgcttggtgtcggtggcggtgctggtgc	CRISPR spacer
aggatttgttggtggcggtggcggtggtggtgc	Protospacer
* * **  ****** *********** ******

7. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NC_019444 (Synechococcus phage S-MbCM6, complete genome) position: , mismatch: 6, identity: 0.818

acgtttgcttggtgtcggtggcggtgctggtgc	CRISPR spacer
aggatttgttggtggcggtggcggtggtggtgc	Protospacer
* * **  ****** *********** ******

8. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054616 (Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.818

acgtttgct--tggtgtcggtggcggtgctggtgc	CRISPR spacer
--ggctgctgctggtgacggtggcggtgctggcgc	Protospacer
  * .****  ***** ***************.**

9. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009695 (Bacillus anthracis strain RA3 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

10. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009542 (Bacillus anthracis strain BA1015 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

11. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010320 (Bacillus anthracis strain Canadian Bison isolate A0369 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

12. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009326 (Bacillus anthracis strain Vollum 1B plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

13. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009979 (Bacillus anthracis strain Ames isolate BACI008 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

14. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU525621 (Bacillus anthracis strain P.NO2 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

15. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NC_014332 (Bacillus cereus biovar anthracis str. CI plasmid pCI-XO2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

16. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NC_012577 (Bacillus anthracis str. CDC 684 plasmid pX02, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

17. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015778 (Bacillus anthracis strain Tangail-1 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

18. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018905 (Bacillus anthracis strain Tyrol 4675 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

19. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023003 (Bacillus anthracis strain 14RA5914 plasmid pX02, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

20. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019733 (Bacillus anthracis strain PCr plasmid PCr-pXO2) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

21. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018445 (Bacillus anthracis strain CZC5 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

22. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029325 (Bacillus anthracis strain 17OD930 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

23. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NC_012655 (Bacillus anthracis str. A0248 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

24. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NC_007323 (Bacillus anthracis str. 'Ames Ancestor' plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

25. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010854 (Bacillus anthracis strain A1144 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

26. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007617 (Bacillus anthracis strain 2000031021 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

27. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP008848 (Bacillus anthracis strain HYU01 plasmid pX02, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

28. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006744 (Bacillus anthracis str. SVA11 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

29. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014835 (Bacillus anthracis strain Shikan-NIID plasmid pXO2) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

30. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029807 (Bacillus anthracis strain London_499 plasmid pX02, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

31. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NC_002146 (Bacillus anthracis plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

32. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NC_017727 (Bacillus anthracis str. H9401 plasmid BAP2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

33. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009314 (Bacillus anthracis str. Turkey32 strain 35 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

34. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014178 (Bacillus anthracis strain Stendal plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

35. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009475 (Bacillus anthracis strain Pasteur plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

36. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009900 (Bacillus anthracis strain 2002013094 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

37. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009339 (Bacillus anthracis strain Ohio ACB plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

38. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009462 (Bacillus anthracis strain SK-102 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

39. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009698 (Bacillus anthracis strain BA1035 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

40. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009329 (Bacillus anthracis strain K3 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

41. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP001972 (Bacillus anthracis str. A16 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

42. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047133 (Bacillus anthracis str. BF1 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.788

acgtttgc-ttggtgtcggtggcggtgctggtgc	CRISPR spacer
-agttcgtgatgttgtcggtggccgtgctggtgc	Protospacer
  ***.*.  ** ********** **********

43. spacer 1.7|2480082|32|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 8, identity: 0.75

tcagcaacggcgggcggctatcaagcgtttat	CRISPR spacer
ggcgcaacggcgggcggcgatcgagcgtctcg	Protospacer
   *************** ***.*****.*

44. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020084 (Blastomonas fulva strain T2 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

acgtttgcttggtgtcggtggcggtgctggtgc	CRISPR spacer
tggcggggctggtgtcggtggcgatgctggtgc	Protospacer
  *.  * .**************.*********

45. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 8, identity: 0.758

acgtttgcttggtgtcggtggcggtgctggtgc	CRISPR spacer
agggcagggtggtgacggtggcgatgctggtgc	Protospacer
* * . *  ***** ********.*********

46. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to MN693539 (Marine virus AFVG_25M73, complete genome) position: , mismatch: 8, identity: 0.758

acgtttgcttggtgtcggtggcggtgctggtgc	CRISPR spacer
tcgcggtcctggtggtggtggcggtgctggtgc	Protospacer
 **.   *.***** .*****************

47. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to MT276994 (Aeromonas phage AhyVDH1, complete genome) position: , mismatch: 8, identity: 0.758

acgtt-tgcttggtgtcggtggcggtgctggtgc	CRISPR spacer
-catcaagcttggagccggtggcggtgctggggt	Protospacer
 *.*.  ****** *.*************** *.

48. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 8, identity: 0.758

--acgtttgcttggtgtcggtggcggtgctggtgc	CRISPR spacer
cggggctgg--tggtgtcggtgtcgctgctggtgc	Protospacer
  . *.* *  *********** ** *********

49. spacer 1.7|2480082|32|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 9, identity: 0.719

tcagcaacggcgggcggctatcaagcgtttat	CRISPR spacer
ggcgcaacggcgggcggcgatcgagcgcctcg	Protospacer
   *************** ***.****..*

50. spacer 1.7|2480082|32|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046574 (Rhodococcus sp. WAY2 plasmid pRWAY02, complete sequence) position: , mismatch: 9, identity: 0.719

tcagcaacggcgggcggctatcaagcgtttat	CRISPR spacer
ggcgcaacggcgggcggcgatcgagcgcctcg	Protospacer
   *************** ***.****..*

51. spacer 1.21|2481002|34|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 9, identity: 0.735

aaccaaaagacggcgcttgcaaccgaacgcacga	CRISPR spacer
atcgtgacatcggcgcttgcaaccgagcgcatga	Protospacer
* *  .* . ****************.****.**

52. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 9, identity: 0.727

acgtttgcttggtgtcggtggcggtgctggtgc	CRISPR spacer
gggggcgggtggtgacggtggcgatgctggtgc	Protospacer
. *  .*  ***** ********.*********

53. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to MN693299 (Marine virus AFVG_25M439, complete genome) position: , mismatch: 9, identity: 0.727

acgtttgcttggtgtcggtggcggtgctggtgc	CRISPR spacer
aagaactattggtggcggtggaggtgctggtgg	Protospacer
* *  .  ****** ****** **********

54. spacer 1.25|2481266|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035000 (Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence) position: , mismatch: 9, identity: 0.727

cggcactcgcggtcgggcggtgatgcgctcgtc	CRISPR spacer
aagcggccgcggtcgggcgttgatgcgatcgat	Protospacer
 .**. .************ ******* *** .

55. spacer 1.3|2479820|34|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to MN693327 (Marine virus AFVG_25M484, complete genome) position: , mismatch: 10, identity: 0.706

cgttgcacggcattgcagttgtcgaaagcacggc	CRISPR spacer
atcagcacggcgttggagttgtcgaaagcatcaa	Protospacer
  . *******.*** **************. .

56. spacer 1.13|2480475|34|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 10, identity: 0.706

acccttggatatgatcaagtccatcgccccgcac	CRISPR spacer
gcgtcgaatcatgatcaactccatcgccccgcac	Protospacer
.* .. .. .******** ***************

57. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

acgtttgcttggtgtcggtggcggtgctggtgc	CRISPR spacer
gggagatctcggtgtcgatggcggtgctggtca	Protospacer
. *    **.*******.*************

58. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to MN694113 (Marine virus AFVG_250M153, complete genome) position: , mismatch: 10, identity: 0.697

acgtttgcttggtgtcggtggcggtgctggtgc	CRISPR spacer
tgtctcatctggtgtcggtgttggtgctggtgc	Protospacer
   .*....*********** .***********

59. spacer 1.8|2480146|34|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NC_020548 (Azoarcus sp. KH32C plasmid pAZKH, complete sequence) position: , mismatch: 11, identity: 0.676

acatgcttcaactcggcgtaggtgatgccactat	CRISPR spacer
cgttgcatcaactcggcataggtgatgatccgcg	Protospacer
   *** **********.********* . *

60. spacer 1.22|2481068|33|NZ_CP014327|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 12, identity: 0.636

acgtttgcttggtgtcggtggcggtgctggtgc------	CRISPR spacer
------ggtaggtattggtgccggtgccggtgctggtgc	Protospacer
      * * ***.*.**** ******.*****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

340786 : 402763

Bacillus_virus(18.18%)

transposase,integrase

attL 371401:371449|attR 400172:400220

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082802155.1\|340786_340894_+\|transposase	transposase	NA	NA	NA	NA
WP_039004561.1\|342938_343256_-	L-rhamnose mutarotase	NA	NA	NA	NA
WP_039004490.1\|343252_344257_-	ABC transporter permease	NA	NA	NA	NA
WP_039004491.1\|344253_345237_-	ABC transporter permease	NA	NA	NA	NA
WP_039004492.1\|345241_346777_-	sugar ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.7e-15	29.1
WP_039004493.1\|346861_347857_-	rhamnose ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_039004495.1\|348884_350987_+	bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenase	NA	NA	NA	NA
WP_039004496.1\|350999_352274_+	L-rhamnose catabolism isomerase	NA	NA	NA	NA
WP_039004499.1\|353086_353803_-	amino acid ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.2e-18	28.1
WP_039004500.1\|353796_354501_-	ABC transporter permease	NA	NA	NA	NA
WP_039004501.1\|354628_355333_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_039004502.1\|355446_356295_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_039004504.1\|357817_358708_+	NAD(P)-dependent oxidoreductase	L7RCI0	Acanthamoeba_polyphaga_moumouvirus	1.5e-10	22.5
WP_039004562.1\|358983_359232_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_082802156.1\|359599_359806_-	30S ribosomal protein S21	M1HLV7	Pelagibacter_phage	1.1e-07	58.7
WP_039004507.1\|360526_360814_-	hypothetical protein	NA	NA	NA	NA
WP_156477396.1\|361548_361704_+	hypothetical protein	NA	NA	NA	NA
WP_039004508.1\|361866_363123_+	Hint domain-containing protein	NA	NA	NA	NA
WP_039004509.1\|363288_363804_+	hypothetical protein	NA	NA	NA	NA
WP_039004510.1\|363904_364318_-	VOC family protein	NA	NA	NA	NA
WP_082802157.1\|364711_364894_-	DNA gyrase inhibitor YacG	NA	NA	NA	NA
WP_039004511.1\|364894_365923_-	ribonuclease E/G	NA	NA	NA	NA
WP_039004512.1\|365919_366492_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_039004513.1\|366495_366714_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_039004514.1\|366825_367287_-	low molecular weight phosphatase family protein	NA	NA	NA	NA
WP_039004515.1\|367287_367773_-	UPF0262 family protein	NA	NA	NA	NA
WP_039004516.1\|367781_369083_-	histidinol dehydrogenase	NA	NA	NA	NA
WP_039004517.1\|369087_369567_-	DUF2948 family protein	NA	NA	NA	NA
WP_039004518.1\|369563_370829_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_039004519.1\|370846_371026_-	hypothetical protein	NA	NA	NA	NA
371401:371449	attL	NA	NA	NA	NA
WP_039004520.1\|371596_372763_-\|integrase	integrase family protein	A0A0R6PHM8	Moraxella_phage	1.7e-49	32.5
WP_039004521.1\|373179_373596_-	hypothetical protein	NA	NA	NA	NA
WP_052275131.1\|373604_376715_-	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	4.1e-18	22.8
WP_156477397.1\|376725_377319_-	hypothetical protein	NA	NA	NA	NA
WP_052275133.1\|377366_378692_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_039004522.1\|378688_380878_-	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	4.6e-24	28.9
WP_039004523.1\|381377_382013_+	hypothetical protein	NA	NA	NA	NA
WP_156477398.1\|382196_383945_-	hypothetical protein	Q4ZD27	Staphylococcus_phage	1.6e-43	37.8
WP_062628110.1\|384058_384490_-	hypothetical protein	NA	NA	NA	NA
WP_039004525.1\|384479_384686_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_039004526.1\|385272_385647_-	hypothetical protein	NA	NA	NA	NA
WP_082802159.1\|387008_387668_+	hypothetical protein	NA	NA	NA	NA
WP_156477400.1\|387908_388866_+\|transposase	IS630 family transposase	A0A2P0VP61	Tetraselmis_virus	2.1e-13	24.7
WP_039001699.1\|388994_390047_-	hypothetical protein	NA	NA	NA	NA
WP_052274773.1\|390288_391695_-	hypothetical protein	NA	NA	NA	NA
WP_039001698.1\|391963_395356_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_039001697.1\|395709_396060_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_052274772.1\|396031_397288_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_062628112.1\|397503_399075_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	7.2e-96	39.3
WP_039000107.1\|399129_399483_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_039000108.1\|399479_399863_-\|transposase	transposase	NA	NA	NA	NA
WP_062628113.1\|400514_401267_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	3.8e-42	38.5
400172:400220	attR	NA	NA	NA	NA
WP_062628114.1\|401263_402763_-\|transposase	IS21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

983739 : 1018721

uncultured_Caudovirales_phage(25.0%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039002372.1\|983739_985080_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_039002371.1\|985112_986564_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_039002370.1\|986572_986875_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_039002369.1\|986871_987486_-	hypothetical protein	NA	NA	NA	NA
WP_062628143.1\|987498_989061_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.4e-19	29.6
WP_062628144.1\|989021_989597_-	hypothetical protein	NA	NA	NA	NA
WP_039002367.1\|989719_992473_-	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	1.2e-77	28.6
WP_156477414.1\|992517_993510_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_039002365.1\|993506_995381_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_039002364.1\|995390_995885_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_039002363.1\|995877_996702_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_039002362.1\|996781_997267_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_039002361.1\|997347_998835_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_039002360.1\|998838_999351_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_052274836.1\|999428_1000475_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_039002446.1\|1000809_1001196_+	hypothetical protein	NA	NA	NA	NA
WP_039002358.1\|1001199_1001820_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_039002357.1\|1001853_1002276_+	biopolymer transporter ExbD	NA	NA	NA	NA
WP_039002356.1\|1002272_1002677_+	biopolymer transporter ExbD	NA	NA	NA	NA
WP_039002355.1\|1002673_1004098_+	DUF4384 domain-containing protein	NA	NA	NA	NA
WP_052274849.1\|1004120_1005572_-	caspase family protein	NA	NA	NA	NA
WP_052274835.1\|1005650_1006727_-	OmpA family protein	NA	NA	NA	NA
WP_039002354.1\|1007134_1008508_-	glutamine synthetase	NA	NA	NA	NA
WP_052274834.1\|1008847_1010200_+	glutamine synthetase	NA	NA	NA	NA
WP_039002353.1\|1010295_1011924_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	2.4e-17	23.8
WP_039002352.1\|1012104_1012725_-	YdeI/OmpD-associated family protein	NA	NA	NA	NA
WP_039002351.1\|1012893_1013436_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_039002350.1\|1013432_1014131_+	anti-sigma factor	NA	NA	NA	NA
WP_039002442.1\|1014303_1014873_+	fasciclin domain-containing protein	NA	NA	NA	NA
WP_052274833.1\|1014943_1015450_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_169798699.1\|1015511_1015904_+	hypothetical protein	NA	NA	NA	NA
WP_062628145.1\|1016361_1017933_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	7.2e-96	39.3
WP_039000107.1\|1017987_1018341_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_039000108.1\|1018337_1018721_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

2176232 : 2223964

Ralstonia_phage(16.67%)

terminase,transposase,integrase

attL 2171387:2171401|attR 2183213:2183227

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2171387:2171401	attL	NA	NA	NA	NA
WP_039001030.1\|2176232_2177432_-\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	2.9e-68	39.3
WP_039001029.1\|2177737_2179072_+	hypothetical protein	NA	NA	NA	NA
WP_156477450.1\|2179109_2179394_-	hypothetical protein	NA	NA	NA	NA
WP_082802250.1\|2180154_2181327_-	AAA family ATPase	G8DDJ2	Micromonas_pusilla_virus	5.9e-26	28.2
WP_156477558.1\|2182337_2183249_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
2183213:2183227	attR	NA	NA	NA	NA
WP_038999946.1\|2183407_2183932_-	hypothetical protein	NA	NA	NA	NA
WP_156477559.1\|2184101_2184245_+	hypothetical protein	NA	NA	NA	NA
WP_038999945.1\|2184363_2186238_-	hypothetical protein	NA	NA	NA	NA
WP_082802252.1\|2186746_2188624_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_038999941.1\|2189346_2190441_+	PQQ-dependent sugar dehydrogenase	NA	NA	NA	NA
WP_062628210.1\|2190803_2191199_-	hypothetical protein	NA	NA	NA	NA
WP_039004122.1\|2191407_2192460_-	response regulator	NA	NA	NA	NA
WP_082802253.1\|2192456_2194256_-	PAS domain-containing protein	B5LWN0	Feldmannia_species_virus	5.7e-12	28.4
WP_156477451.1\|2194225_2194702_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_039004124.1\|2194884_2195253_+	hypothetical protein	NA	NA	NA	NA
WP_039004126.1\|2196314_2197415_+	hypothetical protein	NA	NA	NA	NA
WP_062628211.1\|2197483_2199772_+	VWA domain-containing protein	NA	NA	NA	NA
WP_039004129.1\|2199768_2200545_+	hypothetical protein	NA	NA	NA	NA
WP_039004130.1\|2200701_2202876_+	hypothetical protein	NA	NA	NA	NA
WP_052275095.1\|2203253_2203451_+	hypothetical protein	NA	NA	NA	NA
WP_156477452.1\|2203516_2203756_+	hypothetical protein	NA	NA	NA	NA
WP_052275097.1\|2203966_2204617_-	SH3 domain-containing protein	NA	NA	NA	NA
WP_052275098.1\|2204709_2205690_-	hypothetical protein	NA	NA	NA	NA
WP_039004133.1\|2205745_2206510_-	hypothetical protein	NA	NA	NA	NA
WP_062628212.1\|2206965_2207262_+\|transposase	transposase	NA	NA	NA	NA
WP_039004322.1\|2208237_2209299_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_039004323.1\|2209585_2210566_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_039004324.1\|2210664_2211996_+	histidinol dehydrogenase	NA	NA	NA	NA
WP_039004325.1\|2212022_2212871_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_082802255.1\|2212867_2214382_+	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.3e-14	29.0
WP_039004327.1\|2214378_2215353_+	ABC transporter permease	NA	NA	NA	NA
WP_039004328.1\|2215349_2216336_+	ABC transporter permease	NA	NA	NA	NA
WP_052275119.1\|2216391_2217519_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_169798730.1\|2217822_2218515_+	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA
WP_039004331.1\|2218561_2219131_+	hypothetical protein	NA	NA	NA	NA
WP_039004332.1\|2219997_2220225_-	hypothetical protein	NA	NA	NA	NA
WP_082802256.1\|2220221_2220329_-\|transposase	transposase	NA	NA	NA	NA
WP_082802257.1\|2220444_2220702_-	DUF4389 domain-containing protein	NA	NA	NA	NA
WP_062628125.1\|2220741_2222238_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_062628126.1\|2222234_2222987_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.2e-42	37.9
WP_039004181.1\|2223496_2223964_+\|terminase	phage terminase small subunit P27 family	Q6DMU4	Streptococcus_phage	4.0e-34	48.9

DBSCAN-SWA_4

2375390 : 2422779

Staphylococcus_phage(14.29%)

terminase,transposase,integrase

attL 2389048:2389107|attR 2421111:2421172

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062628233.1\|2375390_2376551_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.0e-38	34.8
WP_039002951.1\|2376633_2378019_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_062628234.1\|2379198_2380104_+	AEC family transporter	NA	NA	NA	NA
WP_062628235.1\|2380221_2380647_-	hypothetical protein	NA	NA	NA	NA
WP_039003153.1\|2382716_2384216_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_052274934.1\|2384295_2384733_+	cupin domain-containing protein	NA	NA	NA	NA
WP_062628125.1\|2384784_2386281_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_062628126.1\|2386277_2387030_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.2e-42	37.9
WP_062628237.1\|2387396_2388071_+	hypothetical protein	NA	NA	NA	NA
2389048:2389107	attL	NA	NA	NA	NA
WP_039001685.1\|2389530_2390262_+	YrhK family protein	NA	NA	NA	NA
WP_039001684.1\|2390527_2390803_-	hypothetical protein	NA	NA	NA	NA
WP_039001683.1\|2391122_2392640_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA
WP_039001695.1\|2392636_2393386_-	hypothetical protein	NA	NA	NA	NA
WP_039001682.1\|2393477_2394485_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_039001681.1\|2394627_2395713_+	isocitrate/isopropylmalate dehydrogenase family protein	NA	NA	NA	NA
WP_039001680.1\|2395709_2396720_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_039001679.1\|2396724_2397402_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_082802269.1\|2397522_2397762_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_039001694.1\|2398236_2399244_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_039001678.1\|2399683_2400616_+	aldo/keto reductase	NA	NA	NA	NA
WP_082802270.1\|2400675_2401083_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_082802271.1\|2401060_2402101_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA
WP_039001677.1\|2402133_2403000_+	dioxygenase	NA	NA	NA	NA
WP_039001676.1\|2403009_2404059_+	DUF475 domain-containing protein	K4JUR1	Caulobacter_phage	1.9e-63	42.8
WP_052274770.1\|2404534_2404987_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_039001675.1\|2404986_2406222_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_039001674.1\|2406581_2407115_+	hypothetical protein	NA	NA	NA	NA
WP_052274768.1\|2407627_2409574_+	PAS domain-containing hybrid sensor histidine kinase/response regulator	NA	NA	NA	NA
WP_082802272.1\|2409806_2410151_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_082802273.1\|2410132_2410747_-	hypothetical protein	NA	NA	NA	NA
WP_039001673.1\|2411804_2412101_-	DUF2218 domain-containing protein	NA	NA	NA	NA
WP_052274767.1\|2412202_2413105_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_039001672.1\|2413114_2414059_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4IY97	uncultured_Caudovirales_phage	4.0e-41	34.4
WP_039001671.1\|2414051_2414999_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_039001670.1\|2414991_2415753_+	ATP-binding cassette domain-containing protein	W5SAS9	Pithovirus	2.0e-11	30.5
WP_039001669.1\|2416519_2416981_-	hypothetical protein	NA	NA	NA	NA
WP_039001668.1\|2417032_2417512_+	hypothetical protein	NA	NA	NA	NA
WP_052274766.1\|2417805_2419320_+	DNA modification methylase	E9P620	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.9e-53	31.4
WP_052274765.1\|2419319_2419739_+	hypothetical protein	NA	NA	NA	NA
WP_052274764.1\|2419725_2421126_+\|terminase	phage terminase large subunit	A0A1B1IUW7	uncultured_Mediterranean_phage	8.8e-61	33.2
WP_062628238.1\|2421279_2422779_+\|transposase	IS21 family transposase	NA	NA	NA	NA
2421111:2421172	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2432327 : 2469131

Acidithiobacillus_phage(37.5%)

terminase,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082802277.1\|2432327_2432738_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_062628145.1\|2432738_2434310_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	7.2e-96	39.3
WP_039000107.1\|2434364_2434718_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_039000108.1\|2434714_2435098_-\|transposase	transposase	NA	NA	NA	NA
WP_062628239.1\|2435183_2435558_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	9.6e-23	44.0
WP_039004683.1\|2436830_2437127_+	DUF3489 domain-containing protein	NA	NA	NA	NA
WP_039004684.1\|2437123_2437549_+	DUF2924 domain-containing protein	K4I3X1	Acidithiobacillus_phage	6.6e-12	37.2
WP_062628241.1\|2437545_2439192_+	recombinase family protein	K4ICM1	Acidithiobacillus_phage	4.9e-87	47.8
WP_062628242.1\|2439660_2440548_+	hypothetical protein	NA	NA	NA	NA
WP_082802279.1\|2440673_2442134_+	ParB N-terminal domain-containing protein	K4HZA5	Acidithiobacillus_phage	6.8e-72	38.1
WP_052275155.1\|2442130_2442673_+	hypothetical protein	NA	NA	NA	NA
WP_082802280.1\|2442650_2444099_+\|terminase	phage terminase large subunit	A0A218MNA2	uncultured_virus	9.4e-50	31.7
WP_062628243.1\|2445062_2449154_-	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_169798737.1\|2449165_2451364_-	hypothetical protein	NA	NA	NA	NA
WP_039004689.1\|2452497_2454204_-	hypothetical protein	NA	NA	NA	NA
WP_039004690.1\|2454200_2457128_-	hypothetical protein	NA	NA	NA	NA
WP_039004691.1\|2457124_2458378_-	hypothetical protein	NA	NA	NA	NA
WP_052275157.1\|2458378_2458813_-	GPW/gp25 family protein	NA	NA	NA	NA
WP_039004692.1\|2458816_2459644_-	hypothetical protein	NA	NA	NA	NA
WP_052275158.1\|2459647_2460760_-	hypothetical protein	NA	NA	NA	NA
WP_156477464.1\|2460756_2461086_-	hypothetical protein	NA	NA	NA	NA
WP_052275159.1\|2461089_2461752_-	hypothetical protein	NA	NA	NA	NA
WP_039004693.1\|2461748_2461982_-	hypothetical protein	NA	NA	NA	NA
WP_052275160.1\|2461978_2463334_-	ATP-binding protein	NA	NA	NA	NA
WP_039004694.1\|2463330_2464335_-	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_039004695.1\|2464338_2465139_-	hypothetical protein	NA	NA	NA	NA
WP_039004698.1\|2465135_2465870_-	hypothetical protein	NA	NA	NA	NA
WP_039004700.1\|2465882_2466368_-\|tail	phage tail protein	NA	NA	NA	NA
WP_039004701.1\|2466397_2467930_-\|tail	phage tail sheath family protein	J9PVC2	Bacillus_phage	3.3e-21	24.0
WP_039004704.1\|2468423_2469131_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	1.2e-21	30.5

DBSCAN-SWA_6

3136253 : 3147004

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039004347.1\|3136253_3137294_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.4e-92	52.4
WP_039004346.1\|3137290_3138130_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	7.4e-39	40.1
WP_039004345.1\|3138132_3139005_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.2e-94	58.9
WP_039004344.1\|3139663_3143356_+	vitamin B12-dependent ribonucleotide reductase	A0A1X9SGV9	Bradyrhizobium_phage	0.0e+00	55.6
WP_039004343.1\|3143623_3144190_-	acetolactate synthase small subunit	NA	NA	NA	NA
WP_039004342.1\|3144203_3145958_-	acetolactate synthase 3 large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	3.1e-47	28.2
WP_039004341.1\|3146254_3147004_-	hypothetical protein	A0A2H4J162	uncultured_Caudovirales_phage	3.7e-05	42.2

DBSCAN-SWA_7

3551357 : 3603866

Enterobacteria_phage(42.86%)

transposase,integrase

attL 3567571:3567592|attR 3601575:3601596

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039003157.1\|3551357_3552269_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_169798750.1\|3552301_3552799_-	hypothetical protein	NA	NA	NA	NA
WP_062628334.1\|3552869_3553244_-	hypothetical protein	NA	NA	NA	NA
WP_156477507.1\|3553276_3553648_-	hypothetical protein	NA	NA	NA	NA
WP_062628336.1\|3554014_3554392_-	hypothetical protein	NA	NA	NA	NA
WP_062628337.1\|3554680_3555061_-	hypothetical protein	NA	NA	NA	NA
WP_052274659.1\|3555592_3555904_+	hypothetical protein	NA	NA	NA	NA
WP_052274658.1\|3556548_3556848_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_039000938.1\|3556884_3558309_-	gamma-aminobutyraldehyde dehydrogenase	NA	NA	NA	NA
WP_039000937.1\|3558331_3559138_-	ABC transporter permease	NA	NA	NA	NA
WP_082802349.1\|3559127_3560039_-	ABC transporter permease	NA	NA	NA	NA
WP_039000933.1\|3561076_3562237_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_039000931.1\|3562379_3563288_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_062628338.1\|3563703_3564510_-	hypothetical protein	NA	NA	NA	NA
WP_039000928.1\|3564544_3565939_-	hypothetical protein	NA	NA	NA	NA
WP_156477508.1\|3565935_3567162_-	hypothetical protein	NA	NA	NA	NA
3567571:3567592	attL	NA	NA	NA	NA
WP_062628126.1\|3567616_3568369_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.2e-42	37.9
WP_062628125.1\|3568365_3569862_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_062628339.1\|3570192_3574266_-	DUF1998 domain-containing protein	A0A1B1IUF6	uncultured_Mediterranean_phage	2.3e-24	27.0
WP_082802350.1\|3574346_3576380_-	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	3.4e-21	26.2
WP_156477509.1\|3576270_3579444_-	hypothetical protein	NA	NA	NA	NA
WP_156477510.1\|3580766_3581789_+	hypothetical protein	NA	NA	NA	NA
WP_062628112.1\|3581875_3583447_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	7.2e-96	39.3
WP_039000107.1\|3583501_3583855_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_039000108.1\|3583851_3584235_-\|transposase	transposase	NA	NA	NA	NA
WP_039001013.1\|3584961_3585330_+	thermonuclease family protein	NA	NA	NA	NA
WP_039001006.1\|3585494_3586643_-	hypothetical protein	NA	NA	NA	NA
WP_052274672.1\|3587582_3588098_-	hypothetical protein	NA	NA	NA	NA
WP_052274673.1\|3588174_3588690_-	hypothetical protein	NA	NA	NA	NA
WP_039001007.1\|3589160_3589586_+	hypothetical protein	NA	NA	NA	NA
WP_039001008.1\|3590019_3593412_+	DEAD/DEAH box helicase	J2YAJ8	Acanthamoeba_polyphaga_lentillevirus	1.2e-39	29.2
WP_039001009.1\|3593419_3593914_+	hypothetical protein	NA	NA	NA	NA
WP_039001010.1\|3594306_3595362_-	RNA-directed DNA polymerase	Q7M2A9	Enterobacteria_phage	1.4e-15	29.4
WP_156477511.1\|3597718_3599179_+	multidrug transporter	NA	NA	NA	NA
WP_062628342.1\|3599676_3600318_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_169798751.1\|3600758_3601046_+	hypothetical protein	NA	NA	NA	NA
WP_082802439.1\|3601301_3601409_+	topoisomerase DNA-binding C4 zinc finger domain-containing protein	NA	NA	NA	NA
WP_062628126.1\|3601620_3602373_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.2e-42	37.9
3601575:3601596	attR	NA	NA	NA	NA
WP_062628125.1\|3602369_3603866_-\|transposase	IS21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

3868070 : 3904206

Tetraselmis_virus(20.0%)

transposase,integrase

attL 3862922:3862936|attR 3914556:3914570

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3862922:3862936	attL	NA	NA	NA	NA
WP_082802443.1\|3868070_3869831_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_052274661.1\|3869831_3871667_-	hypothetical protein	NA	NA	NA	NA
WP_169798759.1\|3872146_3872518_-	hypothetical protein	NA	NA	NA	NA
WP_169798760.1\|3872491_3873265_+	AAA family ATPase	A0A0R6PGP8	Moraxella_phage	2.5e-09	25.8
WP_156477400.1\|3873651_3874609_+\|transposase	IS630 family transposase	A0A2P0VP61	Tetraselmis_virus	2.1e-13	24.7
WP_052274663.1\|3875093_3876884_-	SLC13 family permease	NA	NA	NA	NA
WP_039000970.1\|3877060_3879523_-	protein translocase subunit SecD	A0A1B1IVP7	uncultured_Mediterranean_phage	1.0e-43	37.5
WP_039000969.1\|3879569_3879926_-	hypothetical protein	NA	NA	NA	NA
WP_039000968.1\|3879922_3880843_-	calcium/sodium antiporter	NA	NA	NA	NA
WP_039000973.1\|3881112_3882057_+	hypothetical protein	NA	NA	NA	NA
WP_039000967.1\|3882143_3883421_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_052274662.1\|3883714_3884263_+	hypothetical protein	A0A1D7XFL1	Escherichia_phage	8.6e-12	33.1
WP_039000966.1\|3884190_3884904_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.2e-19	31.8
WP_156477400.1\|3885316_3886274_+\|transposase	IS630 family transposase	A0A2P0VP61	Tetraselmis_virus	2.1e-13	24.7
WP_169798761.1\|3886271_3886409_-\|transposase	transposase	NA	NA	NA	NA
WP_039000978.1\|3886640_3886931_+	hypothetical protein	NA	NA	NA	NA
WP_039000977.1\|3886927_3887593_-	L,D-transpeptidase	NA	NA	NA	NA
WP_052274667.1\|3888170_3888491_+	HD domain-containing protein	NA	NA	NA	NA
WP_156477525.1\|3888788_3889382_+	hypothetical protein	NA	NA	NA	NA
WP_052274666.1\|3889326_3889851_-	hypothetical protein	NA	NA	NA	NA
WP_039002764.1\|3891480_3893097_-	GMC family oxidoreductase	NA	NA	NA	NA
WP_082802444.1\|3893140_3893551_-	hypothetical protein	NA	NA	NA	NA
WP_039002763.1\|3893973_3894879_-	hypothetical protein	NA	NA	NA	NA
WP_052274893.1\|3894875_3895787_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_179946770.1\|3895943_3897059_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	8.3e-38	29.9
WP_039002760.1\|3897119_3897959_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_039002759.1\|3897978_3898476_+	GreA/GreB family elongation factor	NA	NA	NA	NA
WP_062628364.1\|3898886_3900014_+	alanine--glyoxylate aminotransferase family protein	A0A0N9QIZ2	Chrysochromulina_ericina_virus	2.2e-78	41.0
WP_039003726.1\|3901051_3902695_-	chaperonin GroEL	A0A240F779	uncultured_virus	7.2e-171	58.2
WP_039003725.1\|3902739_3903027_-	co-chaperone GroES	A0A221S4G8	uncultured_virus	2.6e-20	56.5
WP_156477526.1\|3903260_3903407_-	hypothetical protein	NA	NA	NA	NA
WP_156477527.1\|3903588_3903828_+	hypothetical protein	NA	NA	NA	NA
WP_156477528.1\|3903915_3904206_+\|integrase	integrase	NA	NA	NA	NA
3914556:3914570	attR	NA	NA	NA	NA

DBSCAN-SWA_9

4145705 : 4215238

Planktothrix_phage(22.22%)

transposase,integrase

attL 4184313:4184372|attR 4211415:4211516

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062628194.1\|4145705_4146761_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_039003277.1\|4146844_4147573_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_039003278.1\|4147577_4148711_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
WP_052274949.1\|4148707_4149658_-	ROK family protein	NA	NA	NA	NA
WP_039003279.1\|4149654_4150722_-	SIS domain-containing protein	NA	NA	NA	NA
WP_039003280.1\|4151718_4152855_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_039003281.1\|4152851_4153949_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.4e-26	33.8
WP_179946750.1\|4155250_4156750_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_039003282.1\|4156917_4157673_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_039003283.1\|4157673_4159458_+	family 20 glycosylhydrolase	NA	NA	NA	NA
WP_039003305.1\|4160519_4161644_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_039003284.1\|4161653_4162364_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_039003306.1\|4162476_4163631_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_039003285.1\|4163630_4164521_+	aldo/keto reductase	NA	NA	NA	NA
WP_039003286.1\|4164520_4165024_+	flavin reductase family protein	NA	NA	NA	NA
WP_039003287.1\|4165070_4165661_+	TRAP transporter small permease subunit	NA	NA	NA	NA
WP_039003288.1\|4165660_4166950_+	TRAP transporter large permease	NA	NA	NA	NA
WP_039003289.1\|4166976_4168035_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA
WP_039003290.1\|4168088_4168559_-	sel1 repeat family protein	NA	NA	NA	NA
WP_039003291.1\|4168571_4169849_+	methylamine utilization protein MauG	NA	NA	NA	NA
WP_039003292.1\|4170178_4171483_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_039003293.1\|4171547_4172429_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_039003294.1\|4172437_4173322_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_039003295.1\|4173332_4174379_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	2.9e-24	35.0
WP_039003296.1\|4174375_4175368_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_156477534.1\|4175456_4175615_+	hypothetical protein	NA	NA	NA	NA
WP_039003299.1\|4176572_4176932_-	nitronate monooxygenase	NA	NA	NA	NA
WP_039003307.1\|4176928_4177138_-	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA
WP_062628146.1\|4177630_4178791_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	38.0
WP_052275048.1\|4178787_4179984_-	alkaline phosphatase family protein	NA	NA	NA	NA
WP_052275049.1\|4180107_4180332_+	hypothetical protein	NA	NA	NA	NA
WP_039003817.1\|4181207_4181387_-	hypothetical protein	NA	NA	NA	NA
WP_052275051.1\|4181897_4182440_-	acetyltransferase	NA	NA	NA	NA
WP_039003820.1\|4182703_4183252_+	YaeQ family protein	NA	NA	NA	NA
WP_052275050.1\|4183656_4184358_-	hypothetical protein	NA	NA	NA	NA
4184313:4184372	attL	NA	NA	NA	NA
WP_156477535.1\|4184657_4184900_-	hypothetical protein	NA	NA	NA	NA
WP_062628384.1\|4185078_4185831_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	2.9e-42	38.5
WP_039000982.1\|4188748_4189639_-	restriction endonuclease	NA	NA	NA	NA
WP_039000990.1\|4189653_4193097_-	class I SAM-dependent DNA methyltransferase	Q6NE04	Leptospira_phage	4.6e-26	22.2
WP_039000983.1\|4193284_4194307_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_039000984.1\|4194359_4194785_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_039000985.1\|4194777_4194984_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_039000986.1\|4195076_4195997_-	hypothetical protein	NA	NA	NA	NA
WP_082802379.1\|4196777_4197203_+	GFA family protein	NA	NA	NA	NA
WP_052274668.1\|4197600_4198041_+	hypothetical protein	NA	NA	NA	NA
WP_039000989.1\|4198285_4198807_+	DUF1775 domain-containing protein	NA	NA	NA	NA
WP_052274669.1\|4198912_4200472_+	copper resistance protein CopC	NA	NA	NA	NA
WP_062628388.1\|4200777_4201965_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.4e-80	43.4
WP_062628389.1\|4202372_4203587_+\|integrase	site-specific integrase	Q5QF66	Pseudomonas_virus	6.8e-09	24.6
WP_062628390.1\|4203702_4204791_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_039000370.1\|4204871_4206134_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_039000371.1\|4206130_4207687_+	hypothetical protein	NA	NA	NA	NA
WP_039000372.1\|4207722_4208985_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_039000373.1\|4209055_4210003_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_039000374.1\|4209999_4210830_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_039000375.1\|4210833_4211841_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-25	37.7
4211415:4211516	attR	NA	NA	NA	NA
WP_039000376.1\|4211849_4212860_+	SIS domain-containing protein	NA	NA	NA	NA
WP_082802380.1\|4212972_4213773_+	hypothetical protein	NA	NA	NA	NA
WP_039000377.1\|4214302_4215238_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	2.8e-26	35.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014328

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP014327

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection