CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP010374	Enterobacter hormaechei subsp. steigerwaltii strain 34977 plasmid p34977-43.621kb, complete sequence	0 crisprs	NA	4
NZ_CP010376	Enterobacter hormaechei subsp. steigerwaltii strain 34977 chromosome, complete genome	3 crisprs	csa3,cas3,DEDDh,WYL,DinG,RT,PD-DExK	4
NZ_CP012170	Enterobacter hormaechei subsp. steigerwaltii strain 34977 plasmid p34977-263.138kb, complete sequence	0 crisprs	csa3	3
NZ_CP010375	Enterobacter hormaechei subsp. steigerwaltii strain 34977 plasmid p34977-5.006kb, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 4710

Bacillus_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043053774.1\|3672_4023_-	trbM family protein	NA	NA	NA	NA
WP_032420226.1\|4023_4710_-	lytic transglycosylase domain-containing protein	A0A1P8CWQ1	Bacillus_phage	4.6e-23	53.1

DBSCAN-SWA_2

21297 : 27662

Pseudomonas_phage(20.0%)

integrase

attL 22344:22372|attR 26314:26342

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032420263.1\|21297_21663_-	antirestriction protein	A9J566	Pseudomonas_phage	3.7e-11	31.7
WP_002353166.1\|21898_22267_-	hypothetical protein	NA	NA	NA	NA
22344:22372	attL	NA	NA	NA	NA
WP_032420243.1\|22666_23131_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	9.5e-20	41.5
WP_002353172.1\|23228_23477_+	post-segregation antitoxin CcdA family protein	NA	NA	NA	NA
WP_002353175.1\|23476_23800_+	CcdB family protein	NA	NA	NA	NA
WP_002353195.1\|23961_24153_+	ribbon-helix-helix domain-containing protein	A0A0A7RUX5	Clostridium_phage	7.8e-05	55.6
WP_002353184.1\|24403_24793_-	hypothetical protein	NA	NA	NA	NA
WP_032420248.1\|25406_26174_+\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	2.0e-14	42.7
WP_020316843.1\|26409_26853_+	antirestriction protein	NA	NA	NA	NA
26314:26342	attR	NA	NA	NA	NA
WP_002353182.1\|27014_27662_+	ParA family protein	J9Q7R7	Salmonella_phage	4.1e-05	28.3

DBSCAN-SWA_3

32226 : 33827

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000027057.1\|32226_33087_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001217881.1\|33269_33827_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4

DBSCAN-SWA_4

39901 : 42971

Escherichia_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004199214.1\|39901_40927_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-87	50.3
WP_004152394.1\|40923_41703_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.5e-89	61.8
WP_004199234.1\|42089_42971_+	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP010376

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010376_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010376_1

588244-588374

Orphan

Consensus_repeat	Method
ATATACGGGAAAAACCCGTATGTT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP010376_1

>merge|NZ_CP010376|1|588244-588374|CRISPRCasFinder
ATATACGGGAAAAACCCGTATGTTCAGATGTTGGTTAACTGGATATACAGGAAAAACCCGTATGTCTGCATGATGATATACAGGAAAAACCCGTATGTTTCGGCATGATATACGGGAAAAACCTGTACTAT

>NZ_CP010376|1|1|588244-588374|CRISPRCasFinder
ATATACGGGAAAAACCCGTATGTT	CAGATGTTGGTTAACTGG
ATATACAGGAAAAACCCGTATGTC	TGCATGATGATATACAGGAAAAACCCGTATGTTTCGGCATG
ATATACGGGAAAAACCTGTACTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010376.2\|WP_017383897.1\|580881_581316_-\|DUF3828-domain-containing-protein	unknown	unknown	gnl\|CDD\|372360
NZ_CP010376.2\|WP_040117152.1\|592110_592338_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010376.2\|WP_040117146.1\|584388_585111_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010376.2\|WP_045336163.1\|592737_593775_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010376.2\|WP_029497222.1\|585843_586212_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010376.2\|WP_040117157.1\|596686_597358_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|225110
NZ_CP010376.2\|WP_040117155.1\|594103_595975_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|130214
NZ_CP010376.2\|WP_040117149.1\|589562_590396_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236768
NZ_CP010376.2\|WP_040117156.1\|595975_596653_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010376.2\|WP_017383896.1\|581317_581680_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010376.2\|WP_040117154.1\|593912_594104_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010376.2\|WP_040117148.1\|586806_587415_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271192
NZ_CP010376.2\|WP_040117151.1\|591178_591535_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010376.2\|WP_131631753.1\|590952_591186_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010376.2\|WP_017694625.1\|583126_583552_+\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
NZ_CP010376.2\|WP_040117153.1\|592341_592719_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010376.2\|WP_040117143.1\|579915_580674_-\|DNA-binding-transcriptional-repressor-XynR	unknown	unknown	gnl\|CDD\|224332
NZ_CP010376.2\|WP_040117144.1\|581957_582962_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
NZ_CP010376.2\|WP_040117145.1\|583599_584358_+\|tRNA-isopentenyl-2-thiomethyl-A-37-hydroxylase-MiaE	unknown	unknown	gnl\|CDD\|114868
NZ_CP010376.2\|WP_052876720.1\|578300_579911_+\|glycoside-hydrolase-family-43-protein	unknown	unknown	gnl\|CDD\|226038

Protein	Function_ID	Function_description	E-value
NZ_CP010376.2\|WP_017383897.1\|580881_581316_-\|DUF3828-domain-containing-protein	gnl\|CDD\|372360	pfam12883, DUF3828, Protein of unknown function (DUF3828). This is a family of bacterial proteins of unknown function.	0.0069196
NZ_CP010376.2\|WP_040117149.1\|589562_590396_+\|hypothetical-protein	gnl\|CDD\|236768	PRK10819, PRK10819, transport protein TonB; Provisional.	0.000240718
NZ_CP010376.2\|WP_040117157.1\|596686_597358_-\|EAL-domain-containing-protein	gnl\|CDD\|225110	COG2200, Rtn, c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms].	1.99096e-28
NZ_CP010376.2\|WP_017694625.1\|583126_583552_+\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	6.67437e-65
NZ_CP010376.2\|WP_040117155.1\|594103_595975_+\|hypothetical-protein	gnl\|CDD\|130214	TIGR01144, ATP_synthase_subunit_b, ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase. [Energy metabolism, ATP-proton motive force interconversion].	0.00435925
NZ_CP010376.2\|WP_040117143.1\|579915_580674_-\|DNA-binding-transcriptional-repressor-XynR	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	7.9131e-89
NZ_CP010376.2\|WP_040117144.1\|581957_582962_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NZ_CP010376.2\|WP_040117148.1\|586806_587415_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271192	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	5.91431e-21
NZ_CP010376.2\|WP_040117145.1\|583599_584358_+\|tRNA-isopentenyl-2-thiomethyl-A-37-hydroxylase-MiaE	gnl\|CDD\|114868	pfam06175, MiaE, tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE). This family consists of several bacterial tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.	4.23365e-102
NZ_CP010376.2\|WP_052876720.1\|578300_579911_+\|glycoside-hydrolase-family-43-protein	gnl\|CDD\|226038	COG3507, XynB, Beta-xylosidase [Carbohydrate transport and metabolism].	0

>NZ_CP010376.2|WP_040117148.1|586806_587415_-|tyrosine-type-recombinase/integrase
MEGIAVALKSAEDVKAVAAELRRNTRTNLFYCAWVMQYESALRISDLLTLTWSQFSAGKTHIEVKQQKSKRKADPNKKVKPLRIKITDTMRKIVEMRREEQSTMPVKTDFIFSKGDLRSRGNAVTRNTVFTEFSKIGRRVGFSNVGCHTPRKSKGRILFRAGVPVEQIALLLGHADPRSTLFYIGYTLEVGDELTEEFSLEI
>NZ_CP010376.2|WP_029497222.1|585843_586212_+|hypothetical-protein
MSDKESIRRELTLLLEILALTGEQRDFVESMYQDNANSRGMVMTNKQLRIRYGFHGKHMEKNVAWDGNDQVNSVLAVLIEELSLPIGEKPVNLIEHGVDDVFFYDEESQKWLEIPPKWLIKA
>NZ_CP010376.2|WP_040117146.1|584388_585111_+|hypothetical-protein
MKKTWISTVVVIVAVAAVAFWIFFDRQRAPEAQIDTTLNAMPAWQVIKEQEPVLHQRILDQMAALQKAGEPEQQIIDTIQPQILHLQMSRLQNAPDANVVNYMTINMEQTAAIQKVSDDACFRFLYPMVKGGVNPMRMLDKDLMARRMQADADMMRAAYGKNRHTVTQAEREAAVEDVRPIMKALADKYGEDIQLLQMPEKAVGKEKLSCDMVQDMWAKVLALPEQKVAGVIRLAVSELE
>NZ_CP010376.2|WP_040117145.1|583599_584358_+|tRNA-isopentenyl-2-thiomethyl-A-37-hydroxylase-MiaE
MDYPQILAPVLNFLQCPTPQAWIDKARDPANLPLLLTDHMVCELKAAQTALLLVRKYVADESGADALLDWLKPYEQFTFRDGPEPDFIALHKQIGKIVMPKTDDPWGQALIDSMVLLIKEELHHFWQVREAMLARDIPYVKITASRYAKGMLKEVRTHEPLTLIDKLICGAYIEARSCERFAALAPFLDDDLQKFYLSLLRSEARHYQDYLTLAREVSDDDISPRIQLFGEIEATLISTPDHEFRFHSGVPV
>NZ_CP010376.2|WP_017694625.1|583126_583552_+|ribonuclease-E-inhibitor-RraB
MANPELLEEQREETRLIIEELLEDGSDPDALYTIEHHFSADDFEALEKMAVEAFKLGYEVTEPEELEVEEGDTVICCDILSEGALKAELIDAQVEQLMNLAEKFEVEYDGWGTYFEDPNGEDGEEGDDEDYVDEDDDGVRH
>NZ_CP010376.2|WP_040117144.1|581957_582962_-|ornithine-carbamoyltransferase
MSDLYKKHFLKLLDFTPAQFTSLLTLAAQLKADKKNGKEVQKLTGKNIALIFEKDSTRTRCSFEVAAFDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGHGQEVVETLAQYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPKACWPVESLVAECSALAEKHGGKITLTEDVAAGVKGADFIYTDVWVSMGEAKEKWAERIALLRGYQVNAQMMALTGNPDVKFLHCLPAFHNDQTTLGKQMAKEFDLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLGE
>NZ_CP010376.2|WP_017383896.1|581317_581680_-|hypothetical-protein
MSWNKHEAVSYARSHALTHTGHYCARAIAAAIRAGGLKIEGANAKDFWRSLEKAGFSKVYGTPIEGDIAVIDALPGPNQYGHVCIYDGAGTWYSDFKQRTLYPGPTYRQLQPAITLYRHY
>NZ_CP010376.2|WP_017383897.1|580881_581316_-|DUF3828-domain-containing-protein
MNKLILIVLFSTAALGAEDFQIPMQRALEFNRWYIKQVNNDRYPIQQGNEIDKFVTASTMKKLRHADDPRYADAEFYEADFFMKSQYIGEDWAENVAIDSYDSDPVCVNVNITFGKKTQHTVIDCMVKEDGIWKIQSVAARDNN
>NZ_CP010376.2|WP_040117143.1|579915_580674_-|DNA-binding-transcriptional-repressor-XynR
MPIIQSVERALQILDLFNEQATELKITDISKLMGLSKSTLHSLLKTLQLHGYIDQNPENGKYRLGMKLVERGHFVVGSIDIRQKAKGWLTELSQRTGQTTHLGILDGREGVYIEKIEGKLAAIAYSRIGRRLPVHATAIGKVLIAWLGEAELNVLLEGYQYTTFTPATLASREALMSALAQTREQGYALDSEENEQGVRCVAVPVWNHESRVIAALSLSTLTSRVDDAELADFREQLQQAGLQLSRALGYPA
>NZ_CP010376.2|WP_052876720.1|578300_579911_+|glycoside-hydrolase-family-43-protein
MEITNPILTGFNPDPSLCRQGEDYYIATSTFEWFPGVRIYHSRDLKNWTLVSTPLDRVSMLDMKGNPDSGGIWAPCLSYADGKFWLLYTDVKIVDSPWKNGRNFLVTAPSIEGPWSEPIPMGNGGFDPSLFHDDDGRKYYLYRPWGPRHHSNPHNTIVMQEFDPQTGTLSPERKTLFTGTPLCYTEGAHLYRHAGWYYLMVAEGGTSYEHAVVVLRAKTIDGPYELHPDVTMMTSWHLPENPLQKSGHGSLLQTHTGEWYMAYLTSRPLRLPGVPLLASGGRGYCPLGRETGIARIEWRDGWPYVEGGKHAQLTVKGPQVAEQPGAAQGSWRDEFDGSTLDPELQTLRIPFDDTLGSLTARPGYLRLYGNDSLNSTFTQSTVARRWQHFTFRAETRMQFSPVHFQQSAGLTCYYNSKNWSYCFVDYEEGQGRTIKVIQLDHNVPSWPLHEQPIPVPEQAESVWLRVDVDRLVYRYSYSFDGETWHAVPVTYEAWKLSDDYIGRRGFFTGAFVGLHCEDISGDGCHADFDYFTYEPA
>NZ_CP010376.2|WP_040117149.1|589562_590396_+|hypothetical-protein
MTDIINSKVFSFTNTEDAFNECTRITNLKTGVTVSLSPTNKQLFVRIRHRFHNFVKKRGGKYYDNIDQLGESVGVKYDAASDGIKKLKAVGLISGTIKGRSYQWESVADLTPEDFLFERDINAMKRKTAPEWVDCLKHPVFGNAKEDVAPEVQEEKQQSVPEADPMCEFDDTPEEEAPAPEKVEPAPKPKPTKKPAARKAPDKQQTLSPFEFKTPRDERFDGITFNRLNDASDRFLVFQDYDLPYLVLFESQGKLTNPKAIEHLKMKRNLFERTGRL
>NZ_CP010376.2|WP_131631753.1|590952_591186_+|hypothetical-protein
MPVGAEFELLQDVLASSDNVYYKPRRRREYRVDSSNLKKWQLYAENYIDWVGYSQTNGLSHHIQDFGILFDDKENNE
>NZ_CP010376.2|WP_040117151.1|591178_591535_+|hypothetical-protein
MNNKTMDTVNIVNTLINSFHDIWHLPALRLVNKAWCERTPSALLEAIQYTEEAITALEHWNAAVEHLVQMNGDTVTVDQAWRIANDLEELACSLQYITAELAELAGAIAEKYAVSEFE
>NZ_CP010376.2|WP_040117152.1|592110_592338_+|hypothetical-protein
MFLMNYDRVITHKGASLVLSEKMMKQAANVLGVSVEEIREATEKFWPAASITKSKEGSHPSSGLEKKLKLLAKGK
>NZ_CP010376.2|WP_040117153.1|592341_592719_+|hypothetical-protein
MQFGTFQTLNGNNSHARYKVVAYASDAIMQDKLIRVESGIPADLIVGDLVDATGAKAAAPGDIAYVVVEPARAGDKAFIVASPEHTILALVGVEFGSLDKSLAQAQLATLGFTFTDYDTVALRTT
>NZ_CP010376.2|WP_045336163.1|592737_593775_+|hypothetical-protein
MAYSDLFSGNMYDFASPFTFSTQLNQIVTNLGLFRVEHHDVNSIALEKITDVKNLVAPEKMPYAQSDWNSAERPEFTNSLYQLKYTNSLNSVSSLDLAQFKARGVGDTADQITLAINDFSDAQYAQVSNTVEVDLVEALLGLRVQSQFAGQGDLDFLAGGSKTTYTMDISAGANVFQQLSEIGRIQNVKLGSGLAQAKQGAVILASGKAAVALRYHPSVKDFMVYTLPLESGDNFYTRTKGANPAFETWTLNGVTVIDVTGYSLITDKIGVDGFVSLPVMAENSNAYVLHSGVGVRHATQGKGAELYHQYVVVDQRWGFPEIATECSYLPIVAIPQAIIFGSVSE
>NZ_CP010376.2|WP_040117154.1|593912_594104_+|hypothetical-protein
MQVVLKSAGIHLQVNADTAEELLNLAGLCRVLEIDHGHLRQLLHRGRSVSEALNYLVSKKGGE
>NZ_CP010376.2|WP_040117155.1|594103_595975_+|hypothetical-protein
MSGGLIVNTSTIRNTVEFVVDRNSMKEAMDAFDQIQKKAKGIKDPTLNMKKFSQGLKSAERELDRLNKKASKPRDNSQREAERAAKAKARAEAQAAKEAARNAQRRERAELKLLDTASSFKSMQHLTNVELTQAALAASRITKAYAAGTISLQRQNSEIKRLQQSYRRINAERRAAAKAGGANVLGGGGKATGAISGSLMGLGTGALAGAGIGAAAYGAYSWGKEAVTAQEERSEIVQRAKLGGVDYNVLQALSQYATANGIDSGMGIQGQRKLLDSGKDVSEKLADSYTNSTFDKKSGQWKGGNAAVDTALNMGFTKEDLKSYQSNSFGFVSAYTNTMQGKGYSQEQILHNLEDLADDLGLYHKAFSNQGKAITDQVDVLKRNGQWLNQEQQDQLVAYRKFNQEMDILNDSQKLAFFEGFMESLDPATVKEFKEAMQDALPFFKGIGRAAGDAAVGLLKLTNWITGKLNLLNGDNTSKEAVSQHYGTTSAPAQHGSNPVANAYGASQPKADGHEHNVFDTMREWWNGTSDAKDVSSYAQSTNGDYSPVSMLKQSAAAPAKPASAPIMQPVVLQNQLPEGLIHLTISPDPTFGNMLNATVDQRISDNNQRMVLAVSSGQGTGG
>NZ_CP010376.2|WP_040117156.1|595975_596653_+|hypothetical-protein
MATPGSLTIGGGDASRINSTQNSNNSSATRTKGENGFTILASVYNSSSDSYIQNYQAIVFDAVTDTGVRRQADITSYPVESGAEVSDHVQIRNNTFKLSGIISETPVRLEKDLLYSAGVNGTRISQAIEYLDKMFDSRQPITLVTEHKVYENVILSGISYDYKSEYAMQFDLEFEQIRLVSKATVNVIATKTQGNKSVGGTVKQKVVNNAPKKTESDTVTTEFKK
>NZ_CP010376.2|WP_040117157.1|596686_597358_-|EAL-domain-containing-protein
MDTTFIAEPIVSIDERLLGVELLTRFITSDGRHLHPEFVISSWDLDRKRLFLYEQCGNIATMQTWFERKNLFCTLNIDQQMAFLIRHDYILRQTFESMPFIKLELSEHFPGLDKGLKSPLLKSLSQGVNGLWLDDLGAGNSNVVSLIEGYFEVVKVDRCFFNEQVQKPTFNQLIASIKKYCDKIIIEGIENRDHMGLLREVGIWGLQGYLFKSVPFKNMDSLL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP010376_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010376_2

1443605-1443881

Orphan

Consensus_repeat	Method
GGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP010376_2

>merge|NZ_CP010376|2|1443605-1443881|PILER-CR
GGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTTATTGGTTCCGAGTGATAATTCAGGCAACACCCGAACGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGCCTGAATAGATTTGAAGTACATCCCGCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGG

>NZ_CP010376|2|1|1443605-1443881|PILER-CR
GGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGG	TTCGAATCCTGCACGACCCACCAATTTTATTGGTTCCGAGTGATAATTCAGGCAACACCCGAAC
GGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGG	TTCGAATCCTGCACGACCCACCAGCCTGAATAGATTTGAAGTACATCCCGCAAG
GGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010376.2\|WP_040117389.1\|1449756_1450800_-\|galactose-1-epimerase	unknown	unknown	gnl\|CDD\|182931
NZ_CP010376.2\|WP_023324336.1\|1450793_1451942_-\|galactokinase	unknown	unknown	gnl\|CDD\|179937
NZ_CP010376.2\|WP_003858590.1\|1438113_1438806_+\|Tol-Pal-system-protein-TolQ	unknown	unknown	gnl\|CDD\|182743
NZ_CP010376.2\|WP_017694131.1\|1445200_1445920_+\|nicotinamide-riboside-transporter-PnuC	unknown	unknown	gnl\|CDD\|185295
NZ_CP010376.2\|WP_040117387.1\|1444134_1445178_+\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NZ_CP010376.2\|WP_003858593.1\|1437712_1438117_+\|tol-pal-system-associated-acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|182742
NZ_CP010376.2\|WP_003858574.1\|1442472_1443261_+\|cell-division-protein-CpoB	unknown	unknown	gnl\|CDD\|182745
NZ_CP010376.2\|WP_003858554.1\|1453000_1454017_-\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|182639
NZ_CP010376.2\|WP_003858566.1\|1446960_1447320_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372863
NZ_CP010376.2\|WP_017384962.1\|1440614_1441907_+\|Tol-Pal-system-protein-TolB	unknown	unknown	gnl\|CDD\|235143
NZ_CP010376.2\|WP_006809557.1\|1448738_1449491_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|184516
NZ_CP010376.2\|WP_040117388.1\|1445916_1446861_-\|CDF-family-zinc-transporter-ZitB	unknown	unknown	gnl\|CDD\|235130
NZ_CP010376.2\|WP_017694130.1\|1447624_1448677_+\|3-deoxy-7-phosphoheptulonate-synthase-AroG	unknown	unknown	gnl\|CDD\|236435
NZ_CP010376.2\|WP_003858598.1\|1437160_1437274_+\|cytochrome-bd-I-oxidase-subunit-CydX	unknown	unknown	gnl\|CDD\|227227
NZ_CP010376.2\|WP_003858578.1\|1441941_1442463_+\|peptidoglycan-associated-lipoprotein-Pal	unknown	unknown	gnl\|CDD\|182744
NZ_CP010376.2\|WP_023303309.1\|1436006_1437146_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|184965
NZ_CP010376.2\|WP_026094363.1\|1439266_1440514_+\|cell-envelope-integrity-protein-TolA	unknown	unknown	gnl\|CDD\|236545
NZ_CP010376.2\|WP_003858596.1\|1437273_1437564_+\|cyd-operon-protein-YbgE	unknown	unknown	gnl\|CDD\|236721
NZ_CP010376.2\|WP_017694127.1\|1451944_1452991_-\|galactose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|236963
NZ_CP010376.2\|WP_003858589.1\|1438809_1439238_+\|colicin-uptake-protein-TolR	unknown	unknown	gnl\|CDD\|236824

Protein	Function_ID	Function_description	E-value
NZ_CP010376.2\|WP_040117389.1\|1449756_1450800_-\|galactose-1-epimerase	gnl\|CDD\|182931	PRK11055, galM, galactose-1-epimerase; Provisional.	0
NZ_CP010376.2\|WP_023324336.1\|1450793_1451942_-\|galactokinase	gnl\|CDD\|179937	PRK05101, PRK05101, galactokinase; Provisional.	0
NZ_CP010376.2\|WP_003858590.1\|1438113_1438806_+\|Tol-Pal-system-protein-TolQ	gnl\|CDD\|182743	PRK10801, PRK10801, Tol-Pal system protein TolQ.	9.08981e-166
NZ_CP010376.2\|WP_017694131.1\|1445200_1445920_+\|nicotinamide-riboside-transporter-PnuC	gnl\|CDD\|185295	PRK15397, PRK15397, nicotinamide riboside transporter PnuC; Provisional.	1.37815e-169
NZ_CP010376.2\|WP_040117387.1\|1444134_1445178_+\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	0
NZ_CP010376.2\|WP_003858593.1\|1437712_1438117_+\|tol-pal-system-associated-acyl-CoA-thioesterase	gnl\|CDD\|182742	PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional.	1.00309e-89
NZ_CP010376.2\|WP_003858574.1\|1442472_1443261_+\|cell-division-protein-CpoB	gnl\|CDD\|182745	PRK10803, PRK10803, tol-pal system protein YbgF; Provisional.	1.10798e-165
NZ_CP010376.2\|WP_003858554.1\|1453000_1454017_-\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|182639	PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional.	0
NZ_CP010376.2\|WP_003858566.1\|1446960_1447320_-\|hypothetical-protein	gnl\|CDD\|372863	pfam13985, YbgS, YbgS-like protein. This family of proteins is functionally uncharacterized. The family includes the YbgS protein from E. coli. This family of proteins is found in bacteria. Proteins in this family are approximately 130 amino acids in length. Some members of this family are annotated as homeobox protein, but this annotation cannot be verified.	4.36002e-29
NZ_CP010376.2\|WP_017384962.1\|1440614_1441907_+\|Tol-Pal-system-protein-TolB	gnl\|CDD\|235143	PRK03629, tolB, Tol-Pal system protein TolB.	0
NZ_CP010376.2\|WP_006809557.1\|1448738_1449491_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|184516	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase.	0
NZ_CP010376.2\|WP_040117388.1\|1445916_1446861_-\|CDF-family-zinc-transporter-ZitB	gnl\|CDD\|235130	PRK03557, PRK03557, CDF family zinc transporter ZitB.	0
NZ_CP010376.2\|WP_017694130.1\|1447624_1448677_+\|3-deoxy-7-phosphoheptulonate-synthase-AroG	gnl\|CDD\|236435	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated.	0
NZ_CP010376.2\|WP_003858598.1\|1437160_1437274_+\|cytochrome-bd-I-oxidase-subunit-CydX	gnl\|CDD\|227227	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown].	5.94507e-11
NZ_CP010376.2\|WP_003858578.1\|1441941_1442463_+\|peptidoglycan-associated-lipoprotein-Pal	gnl\|CDD\|182744	PRK10802, PRK10802, peptidoglycan-associated lipoprotein Pal.	1.38395e-116
NZ_CP010376.2\|WP_023303309.1\|1436006_1437146_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|184965	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II.	0
NZ_CP010376.2\|WP_026094363.1\|1439266_1440514_+\|cell-envelope-integrity-protein-TolA	gnl\|CDD\|236545	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional.	2.52606e-54
NZ_CP010376.2\|WP_003858596.1\|1437273_1437564_+\|cyd-operon-protein-YbgE	gnl\|CDD\|236721	PRK10588, PRK10588, hypothetical protein; Provisional.	2.79913e-55
NZ_CP010376.2\|WP_017694127.1\|1451944_1452991_-\|galactose-1-phosphate-uridylyltransferase	gnl\|CDD\|236963	PRK11720, PRK11720, UDP-glucose--hexose-1-phosphate uridylyltransferase.	0
NZ_CP010376.2\|WP_003858589.1\|1438809_1439238_+\|colicin-uptake-protein-TolR	gnl\|CDD\|236824	PRK11024, PRK11024, colicin uptake protein TolR; Provisional.	1.31294e-95

>NZ_CP010376.2|WP_003858574.1|1442472_1443261_+|cell-division-protein-CpoB
MSSNFRHHLMSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQNDIDSLRGQIQESQYQLNQVVERQKQILLQMDSLNSGGAAAQPAAGDQSGAATPAPAADASASSGAPVQSGDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAFYFASVVKNYPKSPKAPDAMYKVGVIMQDKGDTAKAKAVYQQVVAKFPGTDGAKQAQKRLSSMG
>NZ_CP010376.2|WP_003858578.1|1441941_1442463_+|peptidoglycan-associated-lipoprotein-Pal
MQLNKVLKGLMIALPVMAIAACSSNKNASNDQSGEGMMGAGTGMDANGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVY
>NZ_CP010376.2|WP_017384962.1|1440614_1441907_+|Tol-Pal-system-protein-TolB
MKQALRLAFGFLVLLTSAVHATVSIDITDWNDSARPIGVVPFQWAGPGAAPEDIGGIVAADLRNSGKFNPLDRSRLPQQPGTAQEVQPAAWSALGIDAVVVGQVTPAPDGGYNVAYQLVDTGGAPGTVLAQNTYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFTVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLSNGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAAQRITWEGSQNQDADVSADGKTMVMVSTAGGQQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSPYL
>NZ_CP010376.2|WP_026094363.1|1439266_1440514_+|cell-envelope-integrity-protein-TolA
MSKATEQNDKLKRAIIVSAVLHVILFAALIWSSFDEHLDASGGGGGSSIDAVMVDPGAVVQNYNRQQQQQASAKRAEEQREKQAQQQAEELREKQAAEQERLKQLEKERLQAQEAAKEQAEQQKQAEAAAKKAQEQQKQAEEAAAKAAADAKAQADAQAKLAADAAKKAAADAQKKAEAEAAKKAAADAKKKAEAEAAKKAAADAQKKAEAEAAKKAAQEAEKKAAADAAKKAAAAEKAAAEKAAAAEKAAADKKAAAEKAAADKKAAAEKAAAKKAAAAEKAAAAGVDDLLGDLSSGKNAPKTGGGAKGSNAAPAGSGNTKNNGASGAEINDYKNQIAAAIASRLNDKSLYTGKTCRLHIKLATDGMVLSVESEGGDEALCQAALVAVNQAKLPKPPSQAVYEVFKDASLNFKP
>NZ_CP010376.2|WP_003858589.1|1438809_1439238_+|colicin-uptake-protein-TolR
MARSRGRGRRELKSEINIVPLLDVLLVLLLIFMATAPIITQSVEVDLPDATESQAVSTNDDPPVIIEVSGVGQYSVVVEKDRMDQLPPEQVIAEAQRRLESNPKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLMTQPI
>NZ_CP010376.2|WP_003858590.1|1438113_1438806_+|Tol-Pal-system-protein-TolQ
MTDMNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNAAGREAEAFEDKFWSGIELSRLYQESQGRRDNLSGSEQIFYSGFKEFARLHRANSHAPEAVVEGASRAMRISMNRELENLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILHRQAFTSTESNKG
>NZ_CP010376.2|WP_003858593.1|1437712_1438117_+|tol-pal-system-associated-acyl-CoA-thioesterase
MNTTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQVLLAERVAFVVRKMTLEYFAPARLDDMLEVQTEITSMRGTSLVFTQRIVNAENTVLNSAEVLIVCVDPTIMKPRALPKSIVAEFKQ
>NZ_CP010376.2|WP_003858596.1|1437273_1437564_+|cyd-operon-protein-YbgE
MNIIATLYAVMDKRPLRALSLIMALLLAGCIFWDPSRFAAKTSELEIWHGFLIMWAVCAGVIHGVGFRPKALHWQGIFCPLIADLVLLAGLIFFFF
>NZ_CP010376.2|WP_003858598.1|1437160_1437274_+|cytochrome-bd-I-oxidase-subunit-CydX
MWYFAWILGTLLACAFGVITALALEHVEATKAGEEKH
>NZ_CP010376.2|WP_023303309.1|1436006_1437146_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MIDYEVLRFIWWLLIGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEDTRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFHVDEYMRLFYTGNFFQLLNPFGLLAGVVSVAMIITQGATYLQMRTVGELHLRSRATAQVAALVTLVCFALAGVWVVYGIDGYVVTSAINHAAPSNPLTKEVARQAGAWLVNFNNTPVLWAIPALGVLLPLLTVLTSRLEKGALAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSHMTLNLMTYVACVFVPIVLAYTIWCYWKMFGRITKEHIESNTHSMY
>NZ_CP010376.2|WP_040117387.1|1444134_1445178_+|quinolinate-synthase-NadA
MSVMFDPETAIYPFPPKPAPLSRDEKQFYREKIKRLLKERDAVMVAHYYTDPEIQQLAEETGGCISDSLEMARFGAKHPASTLLVAGVRFMGETAKILSPEKTILMPTLNAECSLDLGCPIDEFTAFCDAHPDRTVVVYANTSAAVKARADWVVTSSIAVELIEHLDSLGEKIIWAPDRHLGNYVQKQTGADVLCWQGACIVHDEFKTQALTRMRGLYPDAAILVHPESPQSIVDMADAVGSTSQLIHAAKTLPNKQLIVATDRGIFYKMQQAVPEKTLLEAPTAGEGATCRSCAHCPWMAMNGLKAIAEGLENGGAAHEIHVDATLREGALIPLNRMLDFAATLRT
>NZ_CP010376.2|WP_017694131.1|1445200_1445920_+|nicotinamide-riboside-transporter-PnuC
MDFFSTQNILVHIPIGAGGYDLSWIEAVGTLAGLLCIWLASLEKISNYAFGLINVTLFAIIFFQIQLYASLLLQLFFFAANIYGWYAWSRQNSQQEAELQIRWLPLPKAITWFAACVVAIGFMTVFIDPVFAFLTRVAVSVMSGLGLNVTMPELQPDAFPFWDSCMMVLSIAAMILMTRKYVENWLLWVVINVISVVIFARQGVYAMSLEYMLLTVIALNGSRMWINSARERGSRALSR
>NZ_CP010376.2|WP_040117388.1|1445916_1446861_-|CDF-family-zinc-transporter-ZitB
MAHSHSHSHSHSTGDENAKRLLLAFGVTATFMIIEVTGGLISGSLALLADAGHMLTDAAALLFALLAVQFARRPPNTRHTFGWLRLTTLAAFVNAIALVVITLLIVWEAFQRFRHPQPIAGTTMMVIAIAGLVANILAFWILHRGSSEKNLNVRAAALHVLGDLLGSVGAIVAALIIMGTGWTPIDPILSVLVSCLVLRSAWRLLKESVNELLEGAPTSLDIGELKRNLCRSIPEVRNVHHVHVWLVGEKPLMTLHVQVIPPHDHDALLERIRHFLEHHYEIAHATIQMEYQPCNGPDCHLNEAQSGHSHAHHH
>NZ_CP010376.2|WP_003858566.1|1446960_1447320_-|hypothetical-protein
MKMTKLTTLFLTATLTLASGSVLAADAGSSGSNGDANAAAEAGQVAPDAKQNIAPNNVDNSNINTGNTNTGGTNTGTMNHEGMTTDEVHKNSVCKDGKCPDPNDKVGSDANTKTDGTTQ
>NZ_CP010376.2|WP_017694130.1|1447624_1448677_+|3-deoxy-7-phosphoheptulonate-synthase-AroG
MNYQNDDLRIKEINELLPPVALLEKFPATENAANTVSHARKAIHKILKGSDDRLLVVIGPCSIHDPAAAKEYASRLLALREELKGELEIVMRVYFEKPRTTVGWKGLINDPHMDNSFQINDGLRIARKLLLEINDSGLPAAGEFLDMITPQYLADLMSWGAIGARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHSAIVNTSGNGDCHIILRGGKEPNYSAKHVAEVKAGLEKAGLAPQVMIDFSHANSSKQFKKQMEVGADVCQQIASGERAVIGVMIESHLVEGNQNLEGSEPLVYGKSVTDACIGWDDTDAILHQLADAVKARRG
>NZ_CP010376.2|WP_006809557.1|1448738_1449491_-|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase
MANTKLVLVRHGESQWNNENRFTGWYDVDLSEKGVSEAKAAGKLLKEEGFTFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELSKDDERYPGHDPRYAKLTEAELPQTESLALTIDRVVPYWNETILPRLKSGERVIIAAHGNSLRALVKYLDNMGEDEILELNIPTGVPLVYEFDENFKPVKHYYLGNADEIAAKAAAVANQGKAK
>NZ_CP010376.2|WP_040117389.1|1449756_1450800_-|galactose-1-epimerase
MLNETPTLAPDGLPYRLLTLRNSAGMVVTLMDWGATLLSARVPMPDGSVRETLLGCASPEQYIEQTAFLGASIGRYANRIARSQFTLDGVTYSLLASQGENQLHGGPEGFDKRRWKIVQQNDGEVWFSLDSLDGDQGFPGNLTATARFTLTEDNRIAIEYRATVDKPCPVNLTNHAYFNLDGNQTDVRSHKLQILADEYLPVDEMGIPYQALKPVSGNSFDFRQPKTIAQDFLSDDDQRKVKGYDHAFLLQAKGDLSQPAAQVWSADEKLQMTVYTTAPALQFYSGNYLEGTTAREHDAYGAWQGLALESEFLPDTPNHPEWPQPDCVLRPGEEYVSVTEYHFIPRA
>NZ_CP010376.2|WP_023324336.1|1450793_1451942_-|galactokinase
MSLKDKTQSLFAEKFGYPATHVIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAKRDDRHVRVIAADYGNEIDEFSLDAPIVTHDSQQWSNYVRGVVKHLQKRNKNFGGADLVISGNVPQGAGLSSSASLEVAVGTVFQQLYHLPLDGAQIALNGQEAENQFVGCNCGIMDQLISALGKKEHALLIDCRSLGTKAVPLPKGAAVVIINSNFKRTLVGSEYNTRREQCETGARFFQQPALRDVSLDEFNKVAHELDPVVTKRVRHILTENARTVEAASALAKGDLKRMGELMAESHASMRDDFEITVPQIDTLVEIVKATIGDKGGVRMTGGGFGGCVVALVPEELVPAIQDAVAKQYEAKTGIKETFYVCKASQGAGQC
>NZ_CP010376.2|WP_017694127.1|1451944_1452991_-|galactose-1-phosphate-uridylyltransferase
MTQFNPVDHPHRRFNPLSGQWILVSPHRAKRPWQGAQETPAKQTLPQHDPDCFLCPGNTRVTGDKNPDYQGTFVFTNDFAALMTDTPDAPESHDPLMRCESARGTSRVICFSPDHSKTLPELSVEALKEVVSTWQAQTAELGQSYPWVQVFENKGAAMGCSNPHPHGQIWANSFLPNEAEREDRLQKAYFTQNGSPMLVDYTQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVQRITELSDAQRDDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRDLTAEQAAERLRAVSDVHYRESGV
>NZ_CP010376.2|WP_003858554.1|1453000_1454017_-|UDP-glucose-4-epimerase-GalE
MRVLVTGGSGYIGSHTCVQLLQSGHDVVILDNLCNSKRSVLPVIERLSGKQPTFVEGDIRNEALMTEILHDHAIETVIHFAGLKAVGESVAKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPEWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVAAMQQLADKPGVHIYNLGAGIGSSVLDVVNAFSKACGKPVKYHFAPRRDGDLPAYWADATKADKELNWRVTRTLDEMAQDTWHWQSRHPQGYPD

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Crispr_ID: NZ_CP010376_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010376_3

1624514-1624626

Orphan

Consensus_repeat	Method
AAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010376_3

>merge|NZ_CP010376|3|1624514-1624626|CRISPRCasFinder
AAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACAGGAGTTTCAAAGGCAAATGAGCTGGCCTGCACGGACAAAAAAGCCCGGTGGCGCTGATGCTTACCGGGCCTACAGG

>NZ_CP010376|3|2|1624514-1624626|CRISPRCasFinder
AAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACAGG	AGTTTCAAAGGCAAATGAGCTGGCCTGCACGGACA
AAAAAGCCCGGTGGCGCTGATGCTTACCGGGCCTACAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010376.2\|WP_040117442.1\|1620130_1621567_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187556
NZ_CP010376.2\|WP_015570984.1\|1633365_1635306_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP010376.2\|WP_040117443.1\|1621577_1622579_-\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710
NZ_CP010376.2\|WP_040117444.1\|1624640_1625609_-\|NADH-oxidoreductase	unknown	unknown	gnl\|CDD\|236735
NZ_CP010376.2\|WP_017384852.1\|1619024_1620038_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_CP010376.2\|WP_017693708.1\|1629482_1631141_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP010376.2\|WP_040117445.1\|1625619_1627272_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP010376.2\|WP_040117446.1\|1631137_1632094_-\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|377343
NZ_CP010376.2\|WP_032103428.1\|1628495_1629191_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP010376.2\|WP_040117439.1\|1612642_1613440_+\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|224900
NZ_CP010376.2\|WP_040117438.1\|1612160_1612646_+\|type-II-secretion-system-protein-M	unknown	unknown	gnl\|CDD\|377391
NZ_CP010376.2\|WP_006809408.1\|1635376_1635598_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NZ_CP010376.2\|WP_017693713.1\|1617074_1618886_+\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|381595
NZ_CP010376.2\|WP_154817112.1\|1632083_1632257_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010376.2\|WP_032653119.1\|1622617_1624336_-\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
NZ_CP010376.2\|WP_040117441.1\|1616499_1616940_+\|type-III-secretion-system-invasion-protein-IagB	unknown	unknown	gnl\|CDD\|185228
NZ_CP010376.2\|WP_040117440.1\|1613694_1616397_+\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|119365
NZ_CP010376.2\|WP_040117437.1\|1611030_1612164_+\|general-secretion-pathway-protein-GspL	unknown	unknown	gnl\|CDD\|273768
NZ_CP010376.2\|WP_017384842.1\|1632253_1633369_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP010376.2\|WP_015570988.1\|1627416_1628316_-\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287

Protein	Function_ID	Function_description	E-value
NZ_CP010376.2\|WP_040117442.1\|1620130_1621567_-\|SDR-family-oxidoreductase	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.39567e-137
NZ_CP010376.2\|WP_015570984.1\|1633365_1635306_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP010376.2\|WP_040117443.1\|1621577_1622579_-\|low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	0
NZ_CP010376.2\|WP_040117444.1\|1624640_1625609_-\|NADH-oxidoreductase	gnl\|CDD\|236735	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional.	0
NZ_CP010376.2\|WP_017384852.1\|1619024_1620038_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	1.05058e-52
NZ_CP010376.2\|WP_017693708.1\|1629482_1631141_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP010376.2\|WP_040117445.1\|1625619_1627272_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP010376.2\|WP_040117446.1\|1631137_1632094_-\|DUF535-domain-containing-protein	gnl\|CDD\|377343	pfam04393, DUF535, Protein of unknown function (DUF535). Family member Shigella flexneri VirK is a virulence protein required for the expression, or correct membrane localization of IcsA (VirG) on the bacterial cell surface,. This family also includes Pasteurella haemolytica lapB, which is thought to be membrane-associated.	4.36909e-127
NZ_CP010376.2\|WP_032103428.1\|1628495_1629191_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	8.80388e-146
NZ_CP010376.2\|WP_040117439.1\|1612642_1613440_+\|prepilin-peptidase	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	1.2341e-39
NZ_CP010376.2\|WP_040117438.1\|1612160_1612646_+\|type-II-secretion-system-protein-M	gnl\|CDD\|377391	pfam04612, T2SSM, Type II secretion system (T2SS), protein M. This family of membrane proteins consists of Type II secretion system protein M sequences from several Gram-negative (diderm) bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the T2SM (EpsM) protein interacts with the T2SL (EpsL) protein, and also forms homodimers.	1.06533e-28
NZ_CP010376.2\|WP_006809408.1\|1635376_1635598_-\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	9.14248e-48
NZ_CP010376.2\|WP_017693713.1\|1617074_1618886_+\|PKD-domain-containing-protein	gnl\|CDD\|381595	cd00325, chitinase_GH19, Glycoside hydrolase family 19, chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Glycoside hydrolase family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases, but they are smaller in size due to certain deletions. Despite lacking any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the prokaryotic/eukaryotic divergence.	2.7565e-72
NZ_CP010376.2\|WP_032653119.1\|1622617_1624336_-\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP010376.2\|WP_040117441.1\|1616499_1616940_+\|type-III-secretion-system-invasion-protein-IagB	gnl\|CDD\|185228	PRK15328, PRK15328, type III secretion system invasion protein IagB.	1.78279e-87
NZ_CP010376.2\|WP_040117440.1\|1613694_1616397_+\|PKD-domain-containing-protein	gnl\|CDD\|119365	cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.	1.29264e-124
NZ_CP010376.2\|WP_040117437.1\|1611030_1612164_+\|general-secretion-pathway-protein-GspL	gnl\|CDD\|273768	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L. This model represents GspL, protein L of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	1.35539e-39
NZ_CP010376.2\|WP_017384842.1\|1632253_1633369_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP010376.2\|WP_015570988.1\|1627416_1628316_-\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	2.69399e-117

>NZ_CP010376.2|WP_032653119.1|1622617_1624336_-|ubiquinone-dependent-pyruvate-dehydrogenase
MKQTVAAYIAKTLEQAGVKRIWGVTGDSLNGLSDSLNKMKTIEWMPTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAILNRGVSVVVLPGDVALKAAPETATTHWYSAPQPTITPADEELKKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKLKAPVVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLILLGTQFPYRAFYPTDAKIIQIDINPGSIGAHSKVDMALIGDIKSTLAALLPLLEEKTDRKFLDKALSDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFADDDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAKATAPERQVVAMCGDGGFSMLMGDFLSVAQMKLPLKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVDDALQRAFAIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELAKTNWLR
>NZ_CP010376.2|WP_040117443.1|1621577_1622579_-|low-specificity-L-threonine-aldolase
MIDLRSDTVTRPSRAMLEEMMAAPVGDDVYGDDPTVNELQRYAAELSGKDAALFLPTGTQANLVALLSHCERGEEYIVGQGAHNYLYEAGGAAVLGSIQPQPIDAAPDGTLPLDKVAAKIKADDIHFARTKLLSLENTHNGKVLPREYLKAAWDFTRERKLGLHVDGARIFNAVVEYGCELKAITQYCDSFTICLSKGLGTPVGSLLVGSADYIRRANRWRKMTGGGMRQAGILAAAGLYALKNNVSRLKDDHDNAAWMAAQLREIGADVMRHDTNMLFVRVGDEHAAALGDFMKARGVLINASPVVRLVMHLDVNREQLTEVVKHWQAFLQR
>NZ_CP010376.2|WP_040117442.1|1620130_1621567_-|SDR-family-oxidoreductase
MPQRILVLGASGYIGQHLTTALSQQGHQVLAAARNTERLQKLHLPGVTCHNVDLSWPKALPALLEGVDTLYYLVHSMGEGGDFIAHERQVAMNVRDALLQTPVKQVIFLSSLQAPEHEQSDHLRARQLTAETLRSARIPVTELRAGIIVGAGSAAFEVMRDMVYNLSVLTPPCWVRSRTTPIALANLLHYLVALLDHPAEQHRVLEAAGPEVLSYQAQFEHFMRVSGRHRWLIPIPFPTRWISVWFLNVITSVPPTTAKALIQGLKHDLLADDRALRALIPQELIRFDDAVRNTLKEEEKLVNSSDWGYDAQAFARWRPEYGYYPKQAGCTVKTTASLAALWEVVNQIGGKERYFFGNILWQTRGALDLLVGHRLAKGRPAHPWLKVGDTVDSWKVIIVEPEKQLALLFGMKAPGLGRLCFTLKDNGDHRELDVRAWWHPHGMPGLFYWLLMIPAHLFIFRGMAKRIAQLAEEKRENN
>NZ_CP010376.2|WP_017384852.1|1619024_1620038_-|NAD(P)-dependent-oxidoreductase
MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLQKMGAEFVHADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQEAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIQEDFRPARFACEFARSKAAGEEVIDLLAQSNPHTRFTVLRPQSLFGPHDKVFIPRLAQMMHHYGSVLLPRGGDALVDMTYYENAVHAMWLASQPECDKLVSGRAYNITNGEPCTLRSIVQRLIDELKIDCRIRSVPYPMLDMIARSMERFGSKSAKEPALTHYGVSKLNFDFTLDISRAENELGYKPIVSLDEGIVRTAAWLRDHGKLHR
>NZ_CP010376.2|WP_017693713.1|1617074_1618886_+|PKD-domain-containing-protein
MNKRTLLSVLIAGACVAPLMAQAANLKETSSEPYTIKASDLAKKEKELTDFPLMASVKETIQTLDNAQVELIEPGRAANPDNVKRVEGIVKASDWEYLFPLRAQAYTYSNFLKAVGKFPALCKTYNDGRDSDAICRKELATMFAHFAQETGGHESWRPEAEWRQALVHVREMGWSEGQKGGYNGECNPDVWQGQTWPCGKDKDGDFLSYFGRGAKQLSYNYNYGPFSEAMYGDVRTLLDKPELVADTWLNLASAIFFFAYPQPPKPSMLQVIDGTWQPNDHDKANGLVPGFGVTTQIINGGVECGGPTEIAQSQNRIKYYKEFANYLKVPVPANEVLGCANMKQFDEGGAGALKIYWEQDWGWSADTPDGKTYSCQLVGYQTPFSAFKDGDYSKCVQHFFNVKIVNDEGSSETPDETPVTPTPTPSDDETPAPTPTPDETPVVVNHAPVAQIAGPIGAVEAGAQVSLSAEGSTDPDGNTLTYTWRSQDGQTVTGQDKAVVTFTAPESATAQQYEVSLTVSDGELSSTTSYLLNVKAKAATPSGEDTSYPAWSANSKYNAGDIVNNHGKLFQCKPFPYSGWCNNAPTYYEPGAGLAWAEAWTAL
>NZ_CP010376.2|WP_040117441.1|1616499_1616940_+|type-III-secretion-system-invasion-protein-IagB
MKKLILLLLIISQSALANCWDKAAHYYHVDPYLLYAIANVESGMNPYAVGQNRDGTRDVGLMQINSSHFTALESRGIDEYRLITEPCTSIMVGASILAGMIRVYGYNWEAVGAYNAGLKKENYPQRMKYAHKVWAKYQQLKLAARY
>NZ_CP010376.2|WP_040117440.1|1613694_1616397_+|PKD-domain-containing-protein
MKFMKPKYLALFIAAATSSAFAAAPGAPTIGYGNDKFALVEVDQAAQDYNNLVKVHNDGVDVKVEWNVWSGDAPTSAKVLLDGQTVWTGAAGATGSATFKVKKGGRYQEQVEVCNASGCAKSASKLIIVADTDGSHLLPLNTSLKENNKAFAKHTDKVVAAYFPEWGVYDRNFPVDKIPAANLNHILYGFIPICGGDGINDGLKTIEGGNSFRVLQNDCKGRPDYTVAIHDPWAALQKPQAGVSGWDDPYKGNFGQLMALKKAHPDLKVLPSIGGWTLSDPFFHMGDPAIRARFVSSVKEFLQTWKFFDGVDIDWEFPGGGGVSENLGNPQQDKATYTALMHDLRTMLNELSAQTGRTYELTSAIGAGRDKIEDVDYTAAQQYLDHIFLMSYDFYGGWSNTVLGHQAALRAPAWRPDTDYTTENGVNALLSQGVQPGKIVVGAGMYGRGWTGVHGYTGNNPFTGTATGMVKGTWEPGVVDYRQIVNEYKGKPGWEYGYDADAEAPYVFNKTTGDLITYEDARSTTAKGKYVLANKLGGLFAWSIDSDTGDILNAMNESLLGGDATPVDPEVTNHAPIASSADQNVSGPITVTLDGSASSDPDGDAITYKWTQVSGPSVTITNSTKAKATFNVAAATSDQTMVFRLTVTDAKGLSNAIDVQVVNKAPKANQAPVLNPMEAITLESGETYALHAQAADPDGDALTYAWSVPADMHATGTDSANVNITAPEVSSTSTYTLSVVVSDGKTSVQSNVQVTVNPKAAPAPVPDDEDTNPADDVTPPADDVTPPSDKGSCDAPVDANASKYAAWESSKIYNGGDTVSFDHLVWKAKYWTQGNQPGFGVDAWELVSNVKMNWRSDLVYNGGDTTTYEGNVYRAKWWTRGDNPANSDVWVKEGASTDCK
>NZ_CP010376.2|WP_040117439.1|1612642_1613440_+|prepilin-peptidase
MNTFSLMRDAFPVGFPIMSAILGGIVGSFLGVVAERVPGMVMDEEGSGNLLFPASYCPVCQHALAAWENIPLLSWLLLRGRCHQCGSAIPLRLFLVELISALFFGITAWCMPDVQALFSLWLLAAFLLPLAMIDWQHQLLPDCLTQPLLWAGLVLHAFDHTLPLRDALFGAVAGYLSLWLLYWAFRLITGREGLGYGDFKLLAALGAWCGWQALPSIELAAALSGIVGYFAVNNLNKNNLTISFGPYLAFAGIGVFMSQQFAFTF
>NZ_CP010376.2|WP_040117438.1|1612160_1612646_+|type-II-secretion-system-protein-M
MKERIAQLKARYQNYSAREKIILKICAVAIVGVAVYYTGVIPLDNMIQNSKSTLKRQKETLNWMRSEIDKNHLQVQIVKTNNPRTVVENSAHEINLSLTDMRQEGQTLSFVLNRVNVYELRSWLREINQTSGVRLQKINLTPVDHLSDVKAQVQLTWSKNA
>NZ_CP010376.2|WP_040117437.1|1611030_1612164_+|general-secretion-pathway-protein-GspL
MKQVLFVRPDSREGGKIMWCESGSERVEVVDSLEMLAEHPLATRVCLLLPASDMIFRHFTLPKKMASQAMAFSWMAEETLIGDVDNLHWTVLHKKGADVDAVAIDADRLRAALTRCQEAGLNVIQALPDAWLLPVTTGGSTLVAQDDSYWLRLSPHVAGEMEATLLPLLMQKAGVGEVWCYGDAPAKVHVDVQHAWQHPLALIQPRWQTCRVNLLHGEFSLKAGHGRAAKSMKAAMVAAGVLSVGLLLGPRIAMAWMLVQQENRVQEEIVQVYQHHFPSMRQQTNIKYHFGQSLKKQSKGFFLQLDELEKARQAVPAMEIDLLEYDAQQNTLTLSVSAQNQPALQAFVNQTRENFDFTLQPVSTTEPYTAMIAGKHK
>NZ_CP010376.2|WP_040117444.1|1624640_1625609_-|NADH-oxidoreductase
MTMPTSQCPWRMQVHHIHQETPDVWTLSLLCHDYYPYRAGQYALVSVRNSADTLRAYTISSTPGVSEYITLTVRRIDDGAGSEWLTRDVKRGDYIWLSDAQGEFTCDDKTEDKFLLLAAGCGVTPIMSMRRWLAKYRPQADVQVIFSVRSPEDVIFAEEWRNYPVTLVAEHNATHAFVAGRLSRELLQSVPDIANRIVMTCGPAPYMEIVEKEVKALGVTRFFKEQFFTPVAEAATSGMKFTKLQPAQTFFGRVGTTLLEALESNNVPVAAACRAGVCGCCKTKVVSGEYTVTSTMTLTDAEIAEGYVLACSCHPQGDLVLA
>NZ_CP010376.2|WP_040117445.1|1625619_1627272_-|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAFKAREYGIVDHYADSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLNADASARVDNPMAELQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNAIYAQYHKIMAWLGTWPSDMNALLECSMEIGQMNFKVMSILDAGETSTYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLKQTEGTGVNVYTHGEMLPAHGYPELRKFKHLIGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVSHLEGDDFGPVIAQAQQMAGFPYSEIPHLITVGFGRETLLGAADSLIDLVSREKLRHIFLIGGCDGARGERNYFTDFATRVPEDCLILTLACGKYRFNKLDFGNIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVTNIVTGPTAPGFLTPDLLAILNEKFGLRSVTNVEDDMKQLLSA
>NZ_CP010376.2|WP_015570988.1|1627416_1628316_-|lysine-exporter-LysO-family-protein
MFSGLLIILLPLIVGYLIPLRHESALKLINRFLSWIVYVILFFMGISLAFLDNLATNLLSILHYSAVTVVVILLCNIAALFWLERTIPWKNHHHQEKLPSRIAMALESLKLCGVVVLGFLLGLTGWAFLQHATEASEYTLIFLLFLIGIQLRNNGMTLKQIVLNRRGMMVAVIVVASSLAGGVINAFILDLPLKTSLAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGLEMVPAAIVHGFILSLLVPILMAFFSA
>NZ_CP010376.2|WP_032103428.1|1628495_1629191_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFVGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKDIIGYIIAQVIGGIIAAAVLYVIASGKAGFDAAASGFASNGFGEHSPGGYSMLSAIVIEIVLTAGFLLVIHGATDKYAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWLFWVMPIIGGILGGVLYRTLLEKHD
>NZ_CP010376.2|WP_017693708.1|1629482_1631141_+|ATP-dependent-endonuclease
MLLERVEIVGFRGINRLSLQLEQNNVLIGENAWGKSSLLDALTLLLSPEENLYHFVHDDFWFPPGDVNGREKHLHIILTFRESEPGRHRVRRFRPMSPCWVPCEDGFQRIFYRLEGEMAQNDGVLTLREFLDEKGNPIPLDNIDELARHLIRLSPVLRLRDARFMRRIRNGTVPNMPEVEVTARELDFLARELVSRPQNLTDGQIRQGLSAMVQLLEHYFSEQGTGQARHRLMRRRSHDEQRSWRYLDIINRMIDRPGGRTHRVILLGLFSTLLQAKGTVRLDRDARPLLLVEDPETRLHPIMLSVAWHLLNLLPLQRVTTTNSGELLSLTPVEYVCRLVRESSRVTAYRLGPGGLNAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLIKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPAMDMEHFMYRQGFDDVFHRVAMIPVDVPMNMRRVIAKAIHRSSKPDLAIEVATEAGRRGVESVPTLLRKMFSRVLWLARGRAD
>NZ_CP010376.2|WP_040117446.1|1631137_1632094_-|DUF535-domain-containing-protein
MSSIVDTPYSTLPQPKSGWQLFKSLASGSLTPGLAWQNPAYRRKFMLRSLATPFTTARLLGNLAKQPRLMQILRVQPGLPCRLHRPWLTVNMGRQTTLGALNDHYEMMSRHLPASLLNGYLSSQGITLVTLTGKEEQQFSVRLSADAFLDKEGEATLTFCDHQNTVLAELTFTLCTYQGKPTLFIGGMQGAKAHVPHEHIQLATKACHGLFPKRLLVEAVMTLAGAFPVEQILAVSNATHIYRSWRYRKKKEGKLLADYDSFWRSLGGQQQDNGNFALPLTMPRKPMEEIASKKRSEYRRRYALLDSLIQQVSQATAR
>NZ_CP010376.2|WP_154817112.1|1632083_1632257_+|hypothetical-protein
MEDMLDPASGGISLFQQALYQHRVNNSRRLRGSGVSLRSGLDKINGDDSQNNYLEYL
>NZ_CP010376.2|WP_017384842.1|1632253_1633369_+|macrolide-transporter-subunit-MacA
MNLKGKRRKLFLLLAVVVLAGGFWLWKVLNAPVPQYQTLIVRPGELQQNVLATGKLDALRKVDVGAQVSGQLKTLSVEIGDKVKKGQLLGVIDPEQAQNQIREVEATLMELRAQRAQAQAERNLAQVTLTRQQALAKTQAISKQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTQIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPQTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPQGVLRLDMTAQVHIQLTGVKNVLTVPLSALGESAGDNRYKVKVLRNGETREREVVIGARNDTDVVVVKGLEEGEEVVTSETLPGAAQ
>NZ_CP010376.2|WP_015570984.1|1633365_1635306_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTALLELNDIRRSYPSGDGPVEVLKGISLRVEAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVSTLDGDALAKLRREHFGFIFQRYHLLSHLSAAQNVEVPAVYAGVERKKRLERAKALLTRLGLAERVDYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDQGHTVIIVTHDPQVAAQAERIIEIHDGELVSNPPPRQSRAAAPKEALPASTGWGQFSSGFREALTMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPGKDFGDDEPQYQQALKYDDLAAIQKQPWVNSATPAVSQNLRLRYGNIDVAASANGVSGDYFNVYGMTFSEGATFNAEQLAGRAQVVVLDANSRRQLFPNKTRVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYSTISGRIMGQSWLNSITVRVKEGYDSALAEQQLERLLTLRHGKKDFFTWNMDGLLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAMGIALSMMIAFALQLFLPGWEIGFSPMAILTAFLCSTFTGILFGWLPARNAARLDPVDALARE
>NZ_CP010376.2|WP_006809408.1|1635376_1635598_-|cold-shock-like-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASLIVPVEAETVA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1183963 : 1231596

Enterobacteria_phage(21.82%)

tail,terminase,head,integrase,holin

attL 1183904:1183950|attR 1231938:1231984

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1183904:1183950	attL	NA	NA	NA	NA
WP_040117279.1\|1183963_1185127_-\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	2.0e-228	99.0
WP_071887069.1\|1185003_1185339_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_040117280.1\|1185347_1185548_-	hypothetical protein	G8C7S1	Escherichia_phage	2.0e-27	84.8
WP_040117281.1\|1185739_1185970_-	hypothetical protein	G8C7S3	Escherichia_phage	7.4e-34	94.7
WP_040117282.1\|1185978_1186218_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	6.3e-28	74.4
WP_052686657.1\|1186195_1186894_-	hypothetical protein	R9VWB9	Serratia_phage	3.6e-39	43.2
WP_040117284.1\|1186908_1187127_-	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	2.7e-17	63.9
WP_040117285.1\|1187221_1187530_-	hypothetical protein	A0A222YY67	Escherichia_phage	4.0e-35	65.6
WP_023300422.1\|1187526_1187745_-	hypothetical protein	NA	NA	NA	NA
WP_040117286.1\|1187741_1188293_-	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	1.8e-54	57.7
WP_040117287.1\|1188453_1188882_-	hypothetical protein	M9NYX4	Enterobacteria_phage	3.2e-70	93.0
WP_040117288.1\|1188878_1189502_-	YqaJ-like viral recombinase	S0A2A9	Cellulophaga_phage	9.3e-47	49.5
WP_162184608.1\|1189498_1189807_-	hypothetical protein	A0A0F7L7F5	uncultured_marine_virus	3.8e-09	33.3
WP_040117289.1\|1190013_1190298_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	3.5e-49	97.9
WP_040117290.1\|1190369_1190567_-	DUF1482 family protein	NA	NA	NA	NA
WP_040117291.1\|1190844_1191063_-	hypothetical protein	NA	NA	NA	NA
WP_040118278.1\|1191470_1191680_+	hypothetical protein	G8C7T7	Escherichia_phage	1.2e-19	78.1
WP_040117292.1\|1191719_1192100_-	lipoprotein	NA	NA	NA	NA
WP_040118279.1\|1192147_1192852_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.6e-103	79.1
WP_040117293.1\|1192963_1193191_+	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.5e-23	70.4
WP_040117294.1\|1193220_1193766_+	hypothetical protein	G8C7U3	Escherichia_phage	4.3e-96	98.9
WP_017383042.1\|1193950_1194886_+	replication protein	K7PGZ0	Enterobacteria_phage	4.9e-76	90.7
WP_040117295.1\|1194882_1195572_+	phage replication protein P	G8C7U6	Escherichia_phage	5.5e-125	95.2
WP_040117296.1\|1195573_1195918_+	winged helix-turn-helix transcriptional regulator	K7PHG5	Enterobacteria_phage	3.6e-56	96.5
WP_040117297.1\|1195914_1196163_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_040117298.1\|1196159_1196456_+	DUF4406 domain-containing protein	A0A222YYT7	Escherichia_phage	3.5e-28	62.0
WP_022651090.1\|1196452_1196656_+	restriction alleviation protein, Lar family	NA	NA	NA	NA
WP_040117299.1\|1196652_1196949_+	hypothetical protein	NA	NA	NA	NA
WP_024242389.1\|1197620_1197947_+	hypothetical protein	NA	NA	NA	NA
WP_001514173.1\|1197946_1198201_+	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	2.3e-28	75.0
WP_001514174.1\|1198217_1198478_+	hypothetical protein	NA	NA	NA	NA
WP_032634774.1\|1198997_1199453_+	hypothetical protein	I6PD71	Cronobacter_phage	7.0e-60	66.2
WP_040117301.1\|1199452_1199623_+	NinE family protein	K7P7K0	Enterobacteria_phage	3.8e-19	90.6
WP_015964709.1\|1199615_1199906_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	6.3e-46	91.7
WP_040117302.1\|1200374_1201064_+	antiterminator	I6PDF8	Cronobacter_phage	4.2e-56	50.2
WP_040117303.1\|1201253_1201496_+	hypothetical protein	NA	NA	NA	NA
WP_001514183.1\|1201930_1202332_+	hypothetical protein	NA	NA	NA	NA
WP_001514184.1\|1202328_1202604_+\|holin	phage holin family protein	S4TNV9	Salmonella_phage	5.8e-09	41.0
WP_040117304.1\|1202607_1203084_+	glycoside hydrolase family 104 protein	S5FV07	Shigella_phage	3.0e-69	79.4
WP_040117305.1\|1203080_1203467_+	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	1.2e-12	36.4
WP_040117307.1\|1203890_1204409_+	Rha family transcriptional regulator	Q38450	Enterobacteria_phage	5.1e-91	96.5
WP_131631759.1\|1204457_1204739_+	hypothetical protein	NA	NA	NA	NA
WP_040117308.1\|1204854_1205073_+	hypothetical protein	NA	NA	NA	NA
WP_040117310.1\|1205238_1205658_+\|terminase	terminase small subunit	A0A1V0E5Q4	Salmonella_phage	7.9e-58	86.9
WP_040117311.1\|1205654_1206902_+\|terminase	terminase	I6RSK1	Salmonella_phage	2.0e-213	97.0
WP_040117312.1\|1206975_1207164_+	hypothetical protein	NA	NA	NA	NA
WP_158003163.1\|1207234_1207411_+	hypothetical protein	NA	NA	NA	NA
WP_040117313.1\|1207421_1208771_+	DUF1073 domain-containing protein	A0A1V0E5Q5	Salmonella_phage	4.0e-228	85.7
WP_040117314.1\|1208730_1209657_+\|head	SPP1 gp7 family phage head morphogenesis protein	Q5G8Y3	Enterobacteria_phage	1.5e-162	92.5
WP_040117315.1\|1209659_1210925_+	hypothetical protein	Q5G8Y2	Enterobacteria_phage	3.1e-222	91.9
WP_040117316.1\|1210937_1211387_+	hypothetical protein	H6WRT3	Salmonella_phage	8.4e-66	85.9
WP_040117317.1\|1211404_1212481_+	hypothetical protein	A0A1V0E5P6	Salmonella_phage	6.3e-184	87.2
WP_040117318.1\|1212490_1212784_+	hypothetical protein	A0A1V0E5P8	Salmonella_phage	4.5e-44	90.7
WP_023300381.1\|1212845_1213247_+	glycoprotein	A0A1V0E5R0	Salmonella_phage	7.1e-56	81.5
WP_023300380.1\|1213246_1213420_+	hypothetical protein	I6R0P9	Salmonella_phage	5.1e-11	48.2
WP_040117319.1\|1213419_1213770_+	hypothetical protein	G0ZNE2	Cronobacter_phage	9.9e-38	63.5
WP_040117320.1\|1213772_1214237_+	hypothetical protein	A0A2P1MXA4	Escherichia_phage	2.0e-30	44.8
WP_040117321.1\|1214233_1214617_+	hypothetical protein	F1C5E4	Cronobacter_phage	5.2e-40	63.8
WP_040117322.1\|1214680_1215424_+	Ig domain-containing protein	F1C5E5	Cronobacter_phage	6.5e-71	86.0
WP_040117323.1\|1215481_1216153_+	hypothetical protein	G0ZNE7	Cronobacter_phage	1.2e-55	50.0
WP_045336471.1\|1216331_1216964_+	NYN domain-containing protein	A4JWQ6	Burkholderia_virus	1.4e-18	36.9
WP_040117324.1\|1217021_1219952_+\|tail	tail protein (tape measure)	F1C5E9	Cronobacter_phage	9.2e-137	42.7
WP_040117325.1\|1219962_1220190_+	hypothetical protein	NA	NA	NA	NA
WP_040117326.1\|1220728_1221199_+	hypothetical protein	F1C5F1	Cronobacter_phage	2.4e-79	93.6
WP_040117327.1\|1221212_1221578_+	C40 family peptidase	F1C5F2	Cronobacter_phage	7.1e-63	90.8
WP_040117328.1\|1221564_1224042_+\|tail	phage tail protein	F1C5A7	Cronobacter_phage	0.0e+00	92.6
WP_071887071.1\|1226552_1227965_-	hypothetical protein	A8CG94	Salmonella_phage	2.9e-11	25.6
WP_040117331.1\|1227961_1228885_-	glycosyltransferase family 2 protein	U5P087	Shigella_phage	5.6e-157	91.1
WP_040117332.1\|1228881_1229244_-	GtrA family protein	U5P0S6	Shigella_phage	9.9e-49	82.5
WP_040117333.1\|1229356_1229662_+	hypothetical protein	K7PGV5	Enterobacterial_phage	6.0e-15	43.6
WP_040117334.1\|1229663_1230932_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	9.0e-230	91.5
WP_040117335.1\|1230924_1231596_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	3.7e-81	59.9
1231938:1231984	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1871425 : 1931813

Enterobacterial_phage(32.0%)

tail,terminase,integrase,holin,portal,head,capsid,tRNA

attL 1883066:1883081|attR 1906337:1906352

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032103856.1\|1871425_1872538_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_032619915.1\|1872578_1873052_-	NUDIX hydrolase	NA	NA	NA	NA
WP_017693618.1\|1873051_1873714_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_003857898.1\|1873831_1875082_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	7.9e-21	94.4
WP_040117504.1\|1875157_1875403_+	YmjA family protein	NA	NA	NA	NA
WP_023296321.1\|1875407_1876907_-	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
WP_071524166.1\|1877031_1877124_-	stress response membrane protein YncL	NA	NA	NA	NA
WP_003857896.1\|1877493_1877742_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_015570794.1\|1877795_1877870_-	protein YoaJ	NA	NA	NA	NA
WP_015570793.1\|1877870_1877969_-	YoaK family small membrane protein	NA	NA	NA	NA
WP_040117505.1\|1878014_1879043_-	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	3.2e-12	31.6
WP_015570791.1\|1879354_1879609_+	DUF333 domain-containing protein	NA	NA	NA	NA
WP_015570790.1\|1879689_1879995_+	hypothetical protein	NA	NA	NA	NA
WP_015570789.1\|1879995_1880340_-	DUF488 domain-containing protein	NA	NA	NA	NA
WP_040117506.1\|1880491_1881199_+	CTP synthase	NA	NA	NA	NA
WP_040117507.1\|1881230_1882418_-	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_017384695.1\|1882517_1883309_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
1883066:1883081	attL	NA	NA	NA	NA
WP_003857881.1\|1883292_1883739_-	DUF441 domain-containing protein	NA	NA	NA	NA
WP_040117508.1\|1883845_1885882_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA
WP_045336308.1\|1885897_1887229_-	hypothetical protein	NA	NA	NA	NA
WP_040117509.1\|1887637_1888138_-\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_032103854.1\|1888357_1889500_-\|integrase	tyrosine-type recombinase/integrase	O21929	Phage_21	6.4e-94	49.3
WP_071887073.1\|1889474_1889738_-	hypothetical protein	NA	NA	NA	NA
WP_040117510.1\|1890119_1890902_-	DUF551 domain-containing protein	M9NZE4	Enterobacteria_phage	5.1e-26	45.8
WP_040117511.1\|1890905_1891115_-	hypothetical protein	NA	NA	NA	NA
WP_052686656.1\|1891117_1891708_-	hypothetical protein	NA	NA	NA	NA
WP_040117512.1\|1891704_1891938_-	hypothetical protein	S4TVX5	Salmonella_phage	1.8e-11	47.7
WP_131631755.1\|1891934_1892531_-	hypothetical protein	K7P6H6	Enterobacteria_phage	9.0e-39	96.5
WP_065186935.1\|1892517_1893543_-	chromosome partitioning protein ParB	K7PKM7	Enterobacterial_phage	7.1e-169	90.7
WP_040118292.1\|1893539_1893953_-	hypothetical protein	K7PJS4	Enterobacterial_phage	8.1e-55	85.3
WP_040117514.1\|1894649_1895369_-	LexA family transcriptional regulator	A0A2R2X2B0	Escherichia_phage	2.6e-77	62.1
WP_023305900.1\|1895467_1895686_+	hypothetical protein	A0A2K8HL98	Pseudomonas_phage	4.9e-11	60.3
WP_032634711.1\|1895727_1896198_+	hypothetical protein	K7PJS5	Enterobacterial_phage	1.4e-74	92.9
WP_063945205.1\|1896438_1896618_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	5.1e-14	69.2
WP_040117516.1\|1896607_1897486_+	GntR family transcriptional regulator	U5P0A0	Shigella_phage	3.1e-40	82.6
WP_040117517.1\|1897482_1897977_+	hypothetical protein	NA	NA	NA	NA
WP_040117518.1\|1897976_1898636_+	DNA methyltransferase	I6PDF5	Cronobacter_phage	7.2e-98	78.9
WP_040117519.1\|1898632_1898860_+	hypothetical protein	NA	NA	NA	NA
WP_040117520.1\|1898856_1899177_+	LexA family transcriptional regulator	K7PHB4	Enterobacterial_phage	5.5e-43	77.4
WP_040117521.1\|1899173_1899563_+	RusA family crossover junction endodeoxyribonuclease	K7PKN5	Enterobacterial_phage	8.4e-62	88.1
WP_080338061.1\|1899578_1900304_+	phage regulatory protein/antirepressor Ant	G0ZND1	Cronobacter_phage	2.2e-55	52.2
WP_040117522.1\|1900300_1901290_+	DUF968 domain-containing protein	K7PJS6	Enterobacterial_phage	1.6e-165	84.5
WP_040118294.1\|1901304_1901670_+	DUF1133 family protein	K7PGW2	Enterobacterial_phage	9.6e-60	95.8
WP_040117523.1\|1901707_1902484_-	hypothetical protein	NA	NA	NA	NA
WP_022648767.1\|1902671_1903067_+	phage membrane protein	K7PHB9	Enterobacterial_phage	9.1e-64	99.2
WP_022648766.1\|1903053_1903335_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	4.1e-42	93.5
WP_040117524.1\|1903334_1903961_+	glycoside hydrolase family 19 protein	K7PJS7	Enterobacterial_phage	1.0e-109	92.8
WP_040117525.1\|1903968_1904244_+	hypothetical protein	G8C7W1	Escherichia_phage	1.2e-25	72.2
WP_162230615.1\|1904212_1904371_+	hypothetical protein	K7PM01	Enterobacterial_phage	2.3e-18	93.2
WP_032622383.1\|1904428_1905022_-	hypothetical protein	NA	NA	NA	NA
WP_040117527.1\|1905091_1906549_+	glycosyltransferase family 2 protein	S4TSQ9	Salmonella_phage	2.9e-264	89.1
1906337:1906352	attR	NA	NA	NA	NA
WP_040117528.1\|1906560_1906896_+	hypothetical protein	NA	NA	NA	NA
WP_040117529.1\|1906849_1907107_-	hypothetical protein	K7P7V5	Enterobacteria_phage	1.1e-33	97.5
WP_040118295.1\|1907272_1907866_+	hypothetical protein	S4TR53	Salmonella_phage	8.8e-95	79.2
WP_040117530.1\|1907858_1908227_+	HNH endonuclease	S4TTG9	Salmonella_phage	4.5e-57	89.3
WP_040117531.1\|1908332_1908827_+\|terminase	terminase small subunit	S4TNN3	Salmonella_phage	8.4e-83	99.4
WP_100134848.1\|1908823_1910485_+\|terminase	terminase large subunit	S4TSQ6	Salmonella_phage	0.0e+00	98.2
WP_040117533.1\|1910543_1912478_+\|capsid	phage major capsid protein	S4TNE3	Salmonella_phage	0.0e+00	93.2
WP_040117534.1\|1912681_1914043_+\|portal	phage portal protein	S4TTG7	Salmonella_phage	2.1e-245	93.2
WP_040117535.1\|1914039_1915083_+\|portal	phage portal protein	S4TNN1	Salmonella_phage	2.4e-103	84.1
WP_040117536.1\|1915079_1915406_+\|head,tail	phage gp6-like head-tail connector protein	S4TSQ3	Salmonella_phage	2.9e-47	88.9
WP_040117537.1\|1915414_1915765_+\|head	phage head closure protein	S4TND9	Salmonella_phage	1.4e-47	83.6
WP_040117538.1\|1915761_1916211_+	HK97 gp10 family phage protein	K7P6X4	Enterobacteria_phage	2.2e-74	99.3
WP_023337468.1\|1916207_1916555_+	DUF3168 domain-containing protein	K7PM93	Enterobacterial_phage	1.4e-47	80.7
WP_040117539.1\|1916728_1917259_+	KilA-N domain-containing protein	A0A1V0E5P7	Salmonella_phage	8.4e-81	85.7
WP_040117540.1\|1917386_1917830_+	hypothetical protein	K7PHL2	Enterobacterial_phage	1.5e-70	92.4
WP_040117541.1\|1917838_1918222_+\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	7.4e-63	93.7
WP_023305929.1\|1918230_1918509_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	8.1e-43	96.7
WP_032648715.1\|1918555_1918921_+	hypothetical protein	NA	NA	NA	NA
WP_040117542.1\|1918982_1922474_+\|tail	phage tail tape measure protein	A0A2H4JHR1	uncultured_Caudovirales_phage	0.0e+00	85.6
WP_022650857.1\|1922476_1922815_+\|tail	phage tail protein	K7PKL8	Enterobacterial_phage	1.1e-38	60.7
WP_040117543.1\|1922811_1923570_+\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	7.8e-96	64.0
WP_022648880.1\|1923572_1924283_+	C40 family peptidase	F1C573	Cronobacter_phage	1.5e-96	69.8
WP_032648711.1\|1924282_1924870_+\|tail	tail assembly protein	A0A1P8DTG7	Proteus_phage	6.1e-48	47.4
WP_040117544.1\|1924922_1928804_+\|tail	phage tail protein	Q9MCR7	Enterobacteria_phage	0.0e+00	58.3
WP_040117545.1\|1928805_1929771_+	hypothetical protein	G1CSU0	Cronobacter_virus	2.2e-58	39.9
WP_040117546.1\|1929830_1931171_+	hypothetical protein	K7P6I4	Enterobacteria_phage	4.8e-125	56.7
WP_154232874.1\|1931265_1931505_-	hypothetical protein	NA	NA	NA	NA
WP_022650865.1\|1931492_1931813_+	hypothetical protein	K7PGV5	Enterobacterial_phage	1.0e-25	53.8

DBSCAN-SWA_3

3383369 : 3419266

Salmonella_phage(32.43%)

terminase,tail,integrase

attL 3385532:3385547|attR 3428778:3428793

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040117941.1\|3383369_3385844_-	phage protein	A0A0F6TK45	Escherichia_coli_O157_typing_phage	0.0e+00	86.5
3385532:3385547	attL	NA	NA	NA	NA
WP_040117942.1\|3385847_3387650_-	hypothetical protein	A0A0F6TJQ3	Escherichia_coli_O157_typing_phage	5.9e-243	74.5
WP_040117943.1\|3387646_3390157_-	bacteriophage protein	A0A193GYI3	Enterobacter_phage	0.0e+00	83.9
WP_040117944.1\|3390169_3390709_-	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	3.4e-61	73.3
WP_040117945.1\|3390708_3391173_-	hypothetical protein	T1SA73	Salmonella_phage	1.4e-79	90.9
WP_040117946.1\|3391172_3393650_-	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	95.5
WP_040117947.1\|3393649_3394255_-	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	3.2e-100	86.6
WP_040117948.1\|3394254_3394578_-	hypothetical protein	A0A0F6R8M8	Escherichia_coli_O157_typing_phage	1.3e-36	71.8
WP_032634950.1\|3394629_3394995_-	hypothetical protein	G9L6C7	Escherichia_phage	2.2e-35	68.6
WP_032634949.1\|3394999_3395440_-	hypothetical protein	A0A193GYT9	Enterobacter_phage	1.8e-65	90.4
WP_040117949.1\|3395491_3396478_-	phage protein	G9L6C5	Escherichia_phage	1.5e-163	86.9
WP_040117950.1\|3396495_3397182_-	peptidase	G9L6C4	Escherichia_phage	5.1e-78	87.0
WP_045336058.1\|3397193_3397517_-	hypothetical protein	NA	NA	NA	NA
WP_040117951.1\|3397513_3397813_-	hypothetical protein	T1SBI9	Salmonella_phage	1.0e-30	69.8
WP_040117952.1\|3397809_3399480_-\|tail	tail protein	T1S9Z7	Salmonella_phage	7.2e-304	95.0
WP_032636549.1\|3399494_3399701_-	hypothetical protein	T1SA67	Salmonella_phage	1.3e-08	95.6
WP_040117953.1\|3400672_3400942_+	hypothetical protein	A0A248SKZ7	Klebsiella_phage	1.0e-10	47.0
WP_040117954.1\|3400985_3402461_-	hypothetical protein	Q858H3	Salmonella_phage	3.2e-295	99.0
WP_131631750.1\|3402457_3403054_-\|terminase	terminase small subunit	A0A193GYG6	Enterobacter_phage	5.5e-97	92.9
WP_040117956.1\|3403110_3403440_-	hypothetical protein	K7PGV5	Enterobacterial_phage	1.3e-28	60.8
WP_040117957.1\|3403517_3403856_-	hypothetical protein	Q858C6	Salmonella_phage	3.0e-47	82.1
WP_040117960.1\|3404414_3404687_-	hypothetical protein	NA	NA	NA	NA
WP_052686648.1\|3405723_3406272_-	ead/Ea22-like family protein	NA	NA	NA	NA
WP_131631748.1\|3406552_3407011_-	hypothetical protein	T1SBJ7	Salmonella_phage	1.3e-21	47.1
WP_040117962.1\|3407079_3407544_-	crossover junction endodeoxyribonuclease	A0A193GYM2	Enterobacter_phage	9.0e-79	96.1
WP_040117963.1\|3407661_3408447_-	replication protein	A0A193GYX1	Enterobacter_phage	2.2e-133	87.4
WP_040117964.1\|3408443_3409220_-	hypothetical protein	G9L6A8	Escherichia_phage	2.3e-87	66.4
WP_023242720.1\|3409219_3409429_-	hypothetical protein	A0A193GYW4	Enterobacter_phage	6.3e-24	73.9
WP_032634928.1\|3409578_3409809_-	hypothetical protein	A0A193GYK6	Enterobacter_phage	1.5e-31	84.0
WP_040117965.1\|3409963_3410554_+	transcriptional regulator	G9L6A6	Escherichia_phage	6.1e-80	75.5
WP_040117966.1\|3410851_3411151_+	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	8.8e-19	53.5
WP_040117967.1\|3411147_3412047_+	endonuclease	Q858E0	Salmonella_phage	1.5e-162	95.0
WP_040117968.1\|3412056_3413079_+	recombination protein RecT	Q858E1	Salmonella_phage	6.0e-184	97.4
WP_032634922.1\|3413127_3413376_+	AlpA family phage regulatory protein	A0A193GYW1	Enterobacter_phage	1.2e-32	79.3
WP_040117969.1\|3413484_3413784_+	PerC family transcriptional regulator	A0A2R9YJK3	Escherichia_phage	1.1e-34	73.7
WP_032634920.1\|3413776_3413935_+	DUF1317 family protein	T1SAR0	Salmonella_phage	2.8e-16	76.9
WP_040117970.1\|3413931_3414123_+	DUF1382 family protein	G9L698	Escherichia_phage	8.9e-17	76.3
WP_040117971.1\|3414119_3414713_+	adenine methylase	T1SA14	Salmonella_phage	6.7e-111	92.9
WP_040117972.1\|3414709_3415963_-\|integrase	site-specific integrase	G9L697	Escherichia_phage	8.0e-215	88.9
WP_006811514.1\|3416154_3417732_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_040117973.1\|3417799_3419266_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	6.1e-89	39.1
3428778:3428793	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3904090 : 3957898

Burkholderia_phage(25.0%)

integrase,transposase,tRNA,protease

attL 3953854:3953869|attR 3957950:3957965

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015571833.1\|3904090_3904588_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_003860034.1\|3904682_3905390_+	deoxyribonuclease I	NA	NA	NA	NA
WP_017692692.1\|3905441_3906173_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_015571835.1\|3906204_3907152_+	glutathione synthase	NA	NA	NA	NA
WP_006811924.1\|3907226_3907787_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_033487645.1\|3907786_3908203_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_017692691.1\|3908212_3909193_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_040118082.1\|3909210_3909912_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_015571838.1\|3909933_3910500_+	YggT family protein	NA	NA	NA	NA
WP_023304404.1\|3910496_3910793_+	YggU family protein	NA	NA	NA	NA
WP_040118083.1\|3910796_3911390_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_017382926.1\|3911382_3912531_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_023304405.1\|3912587_3912926_+	endonuclease domain-containing protein	NA	NA	NA	NA
WP_023304406.1\|3913009_3913726_-	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_023304407.1\|3913783_3914110_-	YggL family protein	NA	NA	NA	NA
WP_015571843.1\|3914109_3914829_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_032649487.1\|3914967_3916026_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_003862425.1\|3916052_3916325_+	oxidative damage protection protein	NA	NA	NA	NA
WP_017382930.1\|3916449_3917526_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_015571846.1\|3917797_3919054_+	nucleoside permease	NA	NA	NA	NA
WP_040118084.1\|3919132_3919936_-	triphosphoribosyl-dephospho-CoA synthase CitG	NA	NA	NA	NA
WP_040118085.1\|3919913_3920453_-	citrate lyase holo-[acyl-carrier protein] synthase	NA	NA	NA	NA
WP_023304410.1\|3920449_3921973_-	citrate lyase subunit alpha	NA	NA	NA	NA
WP_023306921.1\|3921983_3922859_-	citrate (pro-3S)-lyase subunit beta	NA	NA	NA	NA
WP_040118086.1\|3922855_3923149_-	citrate lyase acyl carrier protein	NA	NA	NA	NA
WP_015571850.1\|3923165_3924188_-	[citrate (pro-3S)-lyase] ligase	NA	NA	NA	NA
WP_015571851.1\|3924201_3925065_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_015571852.1\|3925082_3926444_-	2-hydroxycarboxylate transporter family protein	NA	NA	NA	NA
WP_017382937.1\|3926789_3928427_+	sensor histidine kinase	NA	NA	NA	NA
WP_015571854.1\|3928416_3929109_+	response regulator	NA	NA	NA	NA
WP_040118319.1\|3929185_3931324_-	ornithine decarboxylase	NA	NA	NA	NA
WP_017692680.1\|3931505_3932219_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_004115409.1\|3932585_3933617_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_004115412.1\|3933676_3935296_-	DNA-binding domain-containing protein	NA	NA	NA	NA
WP_004115414.1\|3935362_3936838_-	AAA family ATPase	A0A075DXT4	Acinetobacter_phage	2.6e-47	31.5
WP_004115417.1\|3936998_3938384_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_025760278.1\|3939240_3939492_+	hypothetical protein	NA	NA	NA	NA
WP_032742914.1\|3939566_3941000_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.1e-103	50.5
WP_025760317.1\|3941041_3942241_-	restriction endonuclease	E5E3X4	Burkholderia_phage	1.1e-32	39.1
WP_077254457.1\|3942376_3942973_-	toll/interleukin-1 receptor domain-containing protein	A0A097BYB4	Enterococcus_phage	2.8e-08	26.6
WP_053287147.1\|3942968_3943196_+	hypothetical protein	NA	NA	NA	NA
WP_053287146.1\|3943212_3943938_-	hypothetical protein	NA	NA	NA	NA
WP_032742913.1\|3944028_3944961_-	AAA family ATPase	NA	NA	NA	NA
WP_025760314.1\|3944957_3945476_-	hypothetical protein	NA	NA	NA	NA
WP_025760313.1\|3945483_3946449_-	nucleotidyltransferase	NA	NA	NA	NA
WP_001515173.1\|3946631_3946955_+	helix-turn-helix transcriptional regulator	F8TVE5	EBPR_siphovirus	7.5e-08	41.7
WP_025760312.1\|3946957_3947824_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_000427623.1\|3948318_3949323_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_003100847.1\|3949401_3949959_-	recombinase family protein	A0A0C4UR34	Shigella_phage	3.3e-59	63.2
WP_003100853.1\|3949952_3950324_-	hypothetical protein	NA	NA	NA	NA
WP_003100856.1\|3950320_3950821_-	hypothetical protein	NA	NA	NA	NA
WP_003100858.1\|3950817_3951144_-	hypothetical protein	NA	NA	NA	NA
WP_000215515.1\|3951398_3951755_-	cupin domain-containing protein	NA	NA	NA	NA
WP_001293886.1\|3951744_3952146_-	DUF86 domain-containing protein	NA	NA	NA	NA
WP_001247892.1\|3952142_3952433_-	nucleotidyltransferase	NA	NA	NA	NA
WP_032742911.1\|3952741_3953722_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	2.0e-184	98.5
3953854:3953869	attL	NA	NA	NA	NA
WP_040118087.1\|3953894_3954254_-	hypothetical protein	NA	NA	NA	NA
WP_049101629.1\|3954509_3954734_+	hypothetical protein	NA	NA	NA	NA
WP_032742891.1\|3954910_3955810_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_004115425.1\|3956917_3957898_-\|transposase	IS5 family transposase	Q38213	Escherichia_phage	1.6e-149	79.1
3957950:3957965	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP012170

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2179 : 37701

Acinetobacter_phage(22.22%)

integrase,transposase,protease

attL 1048:1059|attR 7099:7110

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1048:1059	attL	NA	NA	NA	NA
WP_000795949.1\|2179_3355_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_001285422.1\|3524_3737_+	hypothetical protein	NA	NA	NA	NA
WP_001232447.1\|4097_5180_+	hypothetical protein	NA	NA	NA	NA
WP_001284318.1\|5345_6845_-	kinase	NA	NA	NA	NA
WP_000081059.1\|6870_8508_-	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
7099:7110	attR	NA	NA	NA	NA
WP_001253656.1\|8507_9548_-	VWA domain-containing protein	NA	NA	NA	NA
WP_001253658.1\|9632_10271_-	VWA domain-containing protein	NA	NA	NA	NA
WP_000116681.1\|10270_10912_-	TerD family protein	NA	NA	NA	NA
WP_001253657.1\|10934_11573_-	VWA domain-containing protein	NA	NA	NA	NA
WP_001176767.1\|12035_12503_-	tellurium resistance protein TerW	NA	NA	NA	NA
WP_011152964.1\|12520_13729_-	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_011152965.1\|13739_14696_-	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA
WP_001585166.1\|14695_15775_-\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	2.8e-38	34.1
WP_001040058.1\|15776_16550_-	hypothetical protein	NA	NA	NA	NA
WP_001280115.1\|16542_17685_-	hypothetical protein	A0A172Q0Y1	Acinetobacter_phage	6.5e-30	34.5
WP_012695441.1\|17694_18753_-	hypothetical protein	NA	NA	NA	NA
WP_000254137.1\|19073_19655_+	tellurium resistance-associated protein TerZ	K4JRX3	Caulobacter_phage	6.3e-13	30.0
WP_001054786.1\|19654_20812_+	tellurium resistance protein TerA	NA	NA	NA	NA
WP_000007449.1\|20834_21290_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_000255079.1\|21312_22353_+	tellurium resistance membrane protein TerC	K7QKE8	Escherichia_phage	2.2e-77	48.0
WP_000116680.1\|22401_22980_+	tellurium resistance membrane protein TerD	A0A2P1N0L4	Streptomyces_phage	2.5e-06	40.0
WP_000301247.1\|23048_23624_+	TerD family protein	K4JRX3	Caulobacter_phage	8.7e-31	41.6
WP_001053340.1\|24052_25294_+	tellurium resistance protein TerF	NA	NA	NA	NA
WP_001067855.1\|25403_26108_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000252081.1\|26417_27311_+	hypothetical protein	NA	NA	NA	NA
WP_001371935.1\|27482_27713_+	hypothetical protein	NA	NA	NA	NA
WP_000071366.1\|27891_28212_+	hypothetical protein	NA	NA	NA	NA
WP_001165367.1\|28728_29040_+	DUF957 domain-containing protein	NA	NA	NA	NA
WP_001371932.1\|29044_29536_+	DUF3085 domain-containing protein	NA	NA	NA	NA
WP_000781547.1\|30088_30292_+	hypothetical protein	NA	NA	NA	NA
WP_000551490.1\|30346_30571_+	hypothetical protein	NA	NA	NA	NA
WP_000814953.1\|30610_30811_+	hypothetical protein	NA	NA	NA	NA
WP_000633161.1\|31033_31345_+	hypothetical protein	NA	NA	NA	NA
WP_000703842.1\|31720_32002_+	hypothetical protein	NA	NA	NA	NA
WP_000137794.1\|32218_32824_+	hypothetical protein	NA	NA	NA	NA
WP_085949440.1\|33156_34525_+\|transposase	IS3-like element ISKpn8 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	9.4e-108	95.5
WP_000589001.1\|34700_36041_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_000219087.1\|36462_37701_+\|transposase	IS110 family transposase	A0A0U3ULR1	Bacillus_phage	2.5e-11	23.1

DBSCAN-SWA_2

80856 : 100188

uncultured_Caudovirales_phage(54.55%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100185530.1\|80856_81771_+\|transposase	IS5 family transposase	A0A077SK28	Escherichia_phage	3.6e-172	98.4
WP_000900745.1\|81936_82254_+	hypothetical protein	NA	NA	NA	NA
WP_001371904.1\|82304_82712_-	hypothetical protein	NA	NA	NA	NA
WP_000285959.1\|83169_83841_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_001100610.1\|83885_84191_-	hypothetical protein	NA	NA	NA	NA
WP_000785965.1\|84213_84531_-	hypothetical protein	NA	NA	NA	NA
WP_001567368.1\|84744_86148_+\|transposase	ISNCY-like element ISKpn21 family transposase	NA	NA	NA	NA
WP_001567369.1\|86176_86809_-	hypothetical protein	NA	NA	NA	NA
WP_072034961.1\|86883_87285_+\|transposase	IS5/IS1182 family transposase	A0A1B0VFY5	Salmonella_phage	2.9e-65	98.4
WP_013815099.1\|87286_88255_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	1.0e-185	99.1
WP_012695470.1\|88415_89231_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	7.4e-161	98.2
WP_012695469.1\|89367_90261_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_021243026.1\|90454_91612_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_012695467.1\|91689_92274_+	MFS transporter	NA	NA	NA	NA
WP_022652343.1\|92295_93264_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	3.7e-183	98.1
WP_000125668.1\|93483_94887_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_000130816.1\|94919_95624_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	8.8e-86	72.9
WP_000941305.1\|95710_96031_+	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.7e-20	53.7
WP_000922628.1\|96076_97366_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	9.9e-168	71.4
WP_000065802.1\|97378_97804_+	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	1.6e-50	70.7
WP_001066652.1\|97863_98691_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	4.9e-43	37.2
WP_000927306.1\|98709_100188_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	7.3e-199	74.4

DBSCAN-SWA_3

114169 : 168862

Escherichia_phage(33.33%)

transposase,integrase,protease

attL 137351:137410|attR 159035:160392

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072196614.1\|114169_115138_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	1.1e-184	98.8
WP_001572373.1\|115326_116946_+	phosphoethanolamine--lipid A transferase MCR-9.1	NA	NA	NA	NA
WP_001572372.1\|117022_117499_+	WbuC family cupin fold metalloprotein	NA	NA	NA	NA
WP_001067855.1\|117664_118369_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000057569.1\|118824_119166_+	hypothetical protein	NA	NA	NA	NA
WP_004248792.1\|119180_119972_-\|protease	zinc metalloprotease	NA	NA	NA	NA
WP_000480968.1\|120152_120989_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_001082319.1\|120988_121792_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_000845039.1\|121949_122963_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_048228299.1\|122949_123555_-	hypothetical protein	NA	NA	NA	NA
WP_000019304.1\|123565_124135_-	trimethoprim-resistant dihydrofolate reductase DfrA19	A0A1V0SD48	Indivirus	3.5e-08	27.2
WP_002008781.1\|124134_124635_-	hypothetical protein	A0A1V0SB21	Catovirus	3.3e-10	31.7
WP_000050481.1\|124900_126442_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000259031.1\|126846_127686_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_012695489.1\|128176_128821_+	quinolone resistance pentapeptide repeat protein QnrB2	NA	NA	NA	NA
WP_003833285.1\|128862_129315_-	SgcJ/EcaC family oxidoreductase	NA	NA	NA	NA
WP_000050481.1\|130621_132163_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000259031.1\|132567_133407_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|133400_133748_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001261740.1\|133911_134703_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_000845048.1\|134848_135862_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001173919.1\|136204_136780_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	5.6e-46	52.7
WP_011191340.1\|136906_137155_-	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
137351:137410	attL	NA	NA	NA	NA
WP_001067855.1\|137413_138118_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001044210.1\|138123_138264_+	hypothetical protein	NA	NA	NA	NA
WP_000845048.1\|138910_139924_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_012695484.1\|140086_140668_+	aminoglycoside N-acetyltransferase AAC(6')-IIc	NA	NA	NA	NA
WP_006473457.1\|141155_142511_+\|transposase	IS1380-like element IS1247 family transposase	A0A1X9I6F6	Streptococcus_phage	2.2e-45	29.7
WP_012695485.1\|142752_143562_+	AAC(3)-II family aminoglycoside N-acetyltransferase	O64018	Bacillus_phage	1.2e-17	29.3
WP_012695486.1\|143689_144103_+	NAD(+)--rifampin ADP-ribosyltransferase	NA	NA	NA	NA
WP_012695487.1\|144465_144897_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_000679427.1\|146206_146554_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|146547_147387_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000376623.1\|147514_148015_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001067855.1\|148090_148795_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001138070.1\|148915_151882_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.9
WP_000427619.1\|151960_152965_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000954592.1\|153146_153323_-	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_001043260.1\|153652_154468_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_000251875.1\|154554_154857_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_001445143.1\|154750_155002_-	hypothetical protein	NA	NA	NA	NA
WP_001120888.1\|155032_156526_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000743213.1\|156736_156961_-	hypothetical protein	NA	NA	NA	NA
WP_001446887.1\|156957_157695_-	recombinase family protein	NA	NA	NA	NA
WP_001044210.1\|158180_158321_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|158326_159031_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_002904004.1\|159167_160028_+	class A extended-spectrum beta-lactamase SHV-12	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|160048_160810_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
159035:160392	attR	NA	NA	NA	NA
WP_002903955.1\|161071_161974_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_001067855.1\|163607_164312_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000159617.1\|164827_165022_-	hypothetical protein	NA	NA	NA	NA
WP_000172888.1\|165018_165330_-	hypothetical protein	NA	NA	NA	NA
WP_001180999.1\|165392_165632_-	hypothetical protein	NA	NA	NA	NA
WP_000140246.1\|167447_167777_-	hypothetical protein	NA	NA	NA	NA
WP_072223036.1\|167893_168862_-\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	1.8e-185	99.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010374

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP010376

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP012170

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection