CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP010379	Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-43.621kb, complete sequence	0 crisprs	NA	0	0
NZ_CP010380	Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-328.905kb, complete sequence	0 crisprs	PD-DExK,csa3	0	17
NZ_CP010377	Enterobacter hormaechei subsp. hormaechei strain 34983 chromosome, complete genome	5 crisprs	csa3,cas3,DEDDh,WYL,DinG,RT	5	8
NZ_CP010378	Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-59.134kb, complete sequence	1 crisprs	NA	1	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 10746

Bacillus_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015063134.1\|1204_1426_-	hypothetical protein	NA	NA	NA	NA
WP_015063133.1\|1496_3509_-	VWA domain-containing protein	NA	NA	NA	NA
WP_015063132.1\|3586_4714_-	DUF3150 domain-containing protein	NA	NA	NA	NA
WP_032610391.1\|4785_5055_-	hypothetical protein	NA	NA	NA	NA
WP_022652173.1\|5093_6146_-	AAA domain-containing protein	NA	NA	NA	NA
WP_022652172.1\|6205_7192_-	hypothetical protein	NA	NA	NA	NA
WP_022652171.1\|7252_7630_-	hypothetical protein	NA	NA	NA	NA
WP_040115163.1\|7688_8564_-	hypothetical protein	NA	NA	NA	NA
WP_015063127.1\|8937_10746_-	ATP-dependent helicase	S5MMD7	Bacillus_phage	9.7e-20	25.9

DBSCAN-SWA_2

25634 : 26669

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015063116.1\|25634_26669_-	ParM	A0A0A7NPX4	Enterobacteria_phage	6.7e-42	34.7

DBSCAN-SWA_3

29916 : 30921

Aeromonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040115168.1\|29916_30921_-	peptide transporter	A0A1I9KFW9	Aeromonas_phage	1.6e-11	31.1

DBSCAN-SWA_4

45682 : 54490

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015063098.1\|45682_46558_-	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.0e-59	42.8
WP_022652149.1\|47099_48173_+	hypothetical protein	A0A1P8DTT7	Salmonella_phage	2.9e-11	34.1
WP_022652148.1\|48190_48391_+	hypothetical protein	NA	NA	NA	NA
WP_015063095.1\|48387_49107_+	hypothetical protein	NA	NA	NA	NA
WP_015063094.1\|49373_50195_+	hypothetical protein	NA	NA	NA	NA
WP_015063093.1\|50209_51055_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	3.5e-44	37.8
WP_040115173.1\|51394_52549_+	hypothetical protein	A0A060D5B2	Salmonella_phage	3.1e-19	27.8
WP_040115175.1\|52813_54490_+	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	4.4e-67	31.0

DBSCAN-SWA_5

61786 : 66429

Wolbachia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004883035.1\|61786_62854_+	DUF1016 domain-containing protein	Q9JMP5	Wolbachia_phage	3.7e-35	32.9
WP_004883036.1\|63093_64341_-	hypothetical protein	NA	NA	NA	NA
WP_004883039.1\|64629_66429_-	ATP-dependent helicase	S5M596	Bacillus_phage	1.8e-29	23.5

DBSCAN-SWA_6

71017 : 79667

Cronobacter_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004883049.1\|71017_71848_+	DUF945 domain-containing protein	K4F5L3	Cronobacter_phage	8.4e-43	39.6
WP_040115180.1\|71928_73995_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	4.8e-23	27.0
WP_004883051.1\|74805_75120_+	DUF736 domain-containing protein	NA	NA	NA	NA
WP_034138236.1\|75159_75426_+	hypothetical protein	NA	NA	NA	NA
WP_064717570.1\|75422_75716_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_028699139.1\|76035_76386_+	DUF2958 domain-containing protein	A0A1W6DX76	Sphingobium_phage	1.3e-18	45.1
WP_004883055.1\|76729_77497_+	DUF2285 domain-containing protein	NA	NA	NA	NA
WP_004883058.1\|77609_77894_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004883059.1\|77920_78763_+	RepA replication protein	NA	NA	NA	NA
WP_071526700.1\|78777_79032_+	hypothetical protein	NA	NA	NA	NA
WP_004883061.1\|79028_79667_+	AAA family ATPase	B0ZSI1	Halomonas_phage	1.1e-31	40.1

DBSCAN-SWA_7

106901 : 110372

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022652139.1\|106901_107294_-	hypothetical protein	Q71TH9	Escherichia_phage	1.0e-43	62.6
WP_022652138.1\|107286_107559_-	hypothetical protein	NA	NA	NA	NA
WP_015063087.1\|107872_108199_-	hypothetical protein	NA	NA	NA	NA
WP_015063086.1\|108387_108903_+	hypothetical protein	NA	NA	NA	NA
WP_040115182.1\|109490_110372_-	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	5.0e-54	41.3

DBSCAN-SWA_8

114860 : 116548

Cronobacter_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015063081.1\|114860_115565_-	hypothetical protein	M1EZB9	Cronobacter_phage	1.8e-17	27.9
WP_032610385.1\|115643_115943_-	hypothetical protein	A0A2P1JU39	Erwinia_phage	9.4e-05	60.0
WP_022652133.1\|115978_116233_-	hypothetical protein	NA	NA	NA	NA
WP_022652132.1\|116284_116548_-	hypothetical protein	A0A076YMQ7	Citrobacter_phage	1.8e-07	42.3

DBSCAN-SWA_9

120498 : 125068

Caulobacter_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015063076.1\|120498_120795_+	hypothetical protein	A0A222YWE2	Escherichia_phage	8.4e-06	36.2
WP_015063075.1\|120803_121985_+	hypothetical protein	NA	NA	NA	NA
WP_015063074.1\|122375_122753_+	hypothetical protein	NA	NA	NA	NA
WP_015063073.1\|122888_123323_+	hypothetical protein	NA	NA	NA	NA
WP_077258061.1\|123323_123644_+	hypothetical protein	NA	NA	NA	NA
WP_015063032.1\|123759_124395_+	hypothetical protein	K4JV11	Caulobacter_phage	1.9e-26	40.4
WP_022652124.1\|124456_125068_+	hypothetical protein	K4JV11	Caulobacter_phage	5.2e-26	40.3

DBSCAN-SWA_10

135227 : 137537

Stx2-converting_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015060490.1\|135227_135605_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	2.7e-57	91.3
WP_040115192.1\|135601_135949_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	5.3e-60	96.5
WP_015060488.1\|135998_137537_+\|transposase	IS66-like element ISSgsp1 family transposase	A0A0P0ZBS5	Stx2-converting_phage	5.9e-276	92.0

DBSCAN-SWA_11

141152 : 144949

Shigella_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085949497.1\|141152_142299_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.3e-147	92.6
WP_012561110.1\|142496_143333_-	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_012561111.1\|143397_143796_-	VOC family protein	NA	NA	NA	NA
WP_017384070.1\|143839_144949_-	S-(hydroxymethyl)glutathione dehydrogenase	E3SJ82	Synechococcus_phage	4.9e-30	28.3

DBSCAN-SWA_12

155349 : 157975

Salmonella_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015063024.1\|155349_156081_+	hypothetical protein	Q71T76	Escherichia_phage	7.3e-67	56.0
WP_022652358.1\|156077_156386_+	hypothetical protein	NA	NA	NA	NA
WP_022652357.1\|156419_156944_+	HNH endonuclease	C6ZR29	Salmonella_phage	2.8e-44	62.7
WP_022652356.1\|156974_157583_+	hypothetical protein	NA	NA	NA	NA
WP_022652355.1\|157738_157975_+	hypothetical protein	S4TRP7	Salmonella_phage	1.1e-05	40.3

DBSCAN-SWA_13

165779 : 168556

Pectobacterium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040115203.1\|165779_166190_-	hypothetical protein	A0A2D2W6B4	Pectobacterium_phage	1.9e-11	45.1
WP_032610479.1\|166189_166444_-	hypothetical protein	NA	NA	NA	NA
WP_040115206.1\|167350_168556_+	DNA-binding protein	A0A2P9HXK7	Yersinia_phage	4.5e-13	27.8

DBSCAN-SWA_14

172309 : 175822

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039273855.1\|172309_173290_+\|transposase	IS5 family transposase	Q38213	Escherichia_phage	6.8e-185	98.5
WP_015063010.1\|173518_173878_+	hypothetical protein	NA	NA	NA	NA
WP_015063009.1\|173910_174639_-	NERD domain-containing protein	A0A2R2ZH57	Clostridioides_phage	3.4e-08	37.7
WP_040113315.1\|174640_175822_-	S49 family peptidase	A0A2I6UG67	Salinibacter_virus	7.8e-10	29.5

DBSCAN-SWA_15

207625 : 263900

Escherichia_phage(29.41%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032610457.1\|207625_208705_-\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	5.6e-39	34.4
WP_032610456.1\|208706_209480_-	hypothetical protein	NA	NA	NA	NA
WP_032610455.1\|209472_210615_-	adenine/guanine phosphoribosyltransferase	A0A172Q0Y1	Acinetobacter_phage	2.5e-29	34.1
WP_015062980.1\|210624_211683_-	hypothetical protein	NA	NA	NA	NA
WP_015062979.1\|212005_212587_+	tellurium resistance protein TerZ	K4JRX3	Caulobacter_phage	5.3e-12	29.6
WP_015062978.1\|212586_213744_+	terA	NA	NA	NA	NA
WP_000007448.1\|213766_214222_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_000255079.1\|214244_215285_+	tellurium resistance membrane protein TerC	K7QKE8	Escherichia_phage	2.2e-77	48.0
WP_015062976.1\|215333_215912_+	tellurium resistance membrane protein TerD	A0A2P1N0L4	Streptomyces_phage	1.5e-06	40.0
WP_015062975.1\|215981_216557_+	TerD family protein	K4JRX3	Caulobacter_phage	5.6e-30	39.6
WP_032610453.1\|216615_217266_+	hypothetical protein	NA	NA	NA	NA
WP_015062974.1\|217281_218523_+	terF	NA	NA	NA	NA
WP_032610522.1\|218670_219351_-	HAD-IB family hydrolase	NA	NA	NA	NA
WP_032610449.1\|219664_220294_+	hypothetical protein	NA	NA	NA	NA
WP_032610521.1\|220442_220796_+	hypothetical protein	NA	NA	NA	NA
WP_039273855.1\|221163_222144_+\|transposase	IS5 family transposase	Q38213	Escherichia_phage	6.8e-185	98.5
WP_040115229.1\|222275_223373_-	hypothetical protein	NA	NA	NA	NA
WP_103216141.1\|223687_223945_+	hypothetical protein	NA	NA	NA	NA
WP_016246546.1\|224334_224628_-	hypothetical protein	NA	NA	NA	NA
WP_016246547.1\|224648_224948_-	hypothetical protein	NA	NA	NA	NA
WP_015062961.1\|225263_226202_-	hypothetical protein	NA	NA	NA	NA
WP_015062960.1\|226207_226723_-	thermonuclease family protein	V5UN65	Mycobacterium_phage	3.2e-08	28.9
WP_015062959.1\|226945_228373_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	9.5e-103	49.4
WP_032610439.1\|228692_230012_+	DUF1173 family protein	NA	NA	NA	NA
WP_024191726.1\|230025_230229_+	hypothetical protein	NA	NA	NA	NA
WP_032610436.1\|230283_231504_-	hypothetical protein	NA	NA	NA	NA
WP_015062955.1\|231506_232319_-	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_040113341.1\|232819_233485_+	hypothetical protein	NA	NA	NA	NA
WP_040115233.1\|233522_233975_+	hypothetical protein	NA	NA	NA	NA
WP_040115235.1\|234086_234491_+	H-NS histone family protein	NA	NA	NA	NA
WP_040115239.1\|235151_238160_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	64.2
WP_040115241.1\|238319_238877_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	3.8e-39	46.1
WP_040115243.1\|238893_239757_+	DUF4231 domain-containing protein	NA	NA	NA	NA
WP_043495618.1\|239797_240202_-	hypothetical protein	NA	NA	NA	NA
WP_043495620.1\|240478_240877_-	TIR domain-containing protein	NA	NA	NA	NA
WP_045284274.1\|240881_242090_-	DUF4071 domain-containing protein	NA	NA	NA	NA
WP_080198910.1\|242408_242969_+	hypothetical protein	NA	NA	NA	NA
WP_040115250.1\|242980_243430_+	H-NS histone family protein	NA	NA	NA	NA
WP_040115252.1\|243491_243896_+	hypothetical protein	NA	NA	NA	NA
WP_001243598.1\|244355_244820_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_040115255.1\|245065_246724_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_040115257.1\|246884_247235_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_072259269.1\|247526_248003_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA
WP_016241611.1\|248117_248555_-	PaaI family thioesterase	NA	NA	NA	NA
WP_000626969.1\|248715_249177_-	hypothetical protein	NA	NA	NA	NA
WP_001137910.1\|249151_249472_-	DUF134 domain-containing protein	NA	NA	NA	NA
WP_000427614.1\|249931_250936_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_004393997.1\|251556_252267_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.7e-31	38.3
WP_040115262.1\|252268_253474_-	ABC transporter permease	NA	NA	NA	NA
WP_032430843.1\|253470_254622_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004393990.1\|254618_255227_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_022542389.1\|255414_256419_+\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_000493286.1\|257022_257352_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	2.4e-09	44.2
WP_000780222.1\|257332_257614_+	helix-turn-helix transcriptional regulator	A0A2I6TC97	Escherichia_phage	1.3e-08	38.0
WP_040115270.1\|257891_258872_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.5e-184	98.5
WP_001752509.1\|259188_259689_-	non-heme ferritin-like protein	NA	NA	NA	NA
WP_001067855.1\|260015_260720_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_040115271.1\|261860_263900_+	ATP-dependent helicase	E3T5J8	Cafeteria_roenbergensis_virus	4.6e-26	26.4

DBSCAN-SWA_16

275367 : 289049

Wolbachia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003092331.1\|275367_276432_+	DUF1016 domain-containing protein	Q9JMP5	Wolbachia_phage	7.7e-33	31.3
WP_003092330.1\|276783_277293_+	DNA repair protein RadC	A0A1B2LRS6	Wolbachia_phage	1.7e-17	34.8
WP_006379607.1\|277359_279663_-	AAA family ATPase	NA	NA	NA	NA
WP_003092327.1\|280208_281036_+	DUF945 domain-containing protein	A0A2C9CYF8	Yersinia_phage	1.6e-46	39.6
WP_000994919.1\|281116_283186_+	ParB N-terminal domain-containing protein	G8DH78	Emiliania_huxleyi_virus	7.7e-21	26.1
WP_022580212.1\|283247_283457_+	hypothetical protein	NA	NA	NA	NA
WP_001273857.1\|284232_284547_+	DUF736 domain-containing protein	NA	NA	NA	NA
WP_006379425.1\|284859_285153_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_016487838.1\|285440_285788_+	DUF2958 domain-containing protein	A0A1W6DX76	Sphingobium_phage	6.6e-18	46.8
WP_003092318.1\|286130_286901_+	DUF2285 domain-containing protein	NA	NA	NA	NA
WP_001247107.1\|287012_287297_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_022652188.1\|287323_288169_+	hypothetical protein	NA	NA	NA	NA
WP_071534288.1\|288183_288414_+	hypothetical protein	NA	NA	NA	NA
WP_003092312.1\|288410_289049_+	AAA family ATPase	A0A2H4JGZ2	uncultured_Caudovirales_phage	3.5e-33	40.0

DBSCAN-SWA_17

294678 : 295500

Pithovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023093371.1\|294678_295500_-	ATP-binding cassette domain-containing protein	W5SAS9	Pithovirus	4.1e-10	29.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP010377

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010377_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010377_1

1581650-1581917

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGTACAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	CRT

4 spacers

The CRISPR arrays of NZ_CP010377_1

>merge|NZ_CP010377|1|1581650-1581917|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTACAGGCAGCTTAGAAATGATGGTTAAGACCGACATTAACAACAAGAAGGTTCACTGCCGTACAGGCAGCTTAGAAAGGAGGCCGAGGCGGAGTGGCTCGACAACCTGCGTTCACTGCCGTACAGGCAGCTTAGAAAACACGCCATCGCTCTCTGAACTAATGGCTTTCGTTCACTGCCGTACAGGCAGCTTAGAAATGAAATGTCTTGCATAGTGAGTCCTTAAATAAGTTCACTGTCGTACAGGCAGTAGGCTCA

>NZ_CP010377|1|1|1581650-1581857|PILER-CR
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGATGGTTAAGACCGACATTAACAACAAGAAG
GTTCACTGCCGTACAGGCAGCTTAGAAA	GGAGGCCGAGGCGGAGTGGCTCGACAACCTGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACACGCCATCGCTCTCTGAACTAATGGCTTTC
GTTCACTGCCGTACAGGCAGCTTAGAAA

>NZ_CP010377|1|1|1581650-1581917|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGATGGTTAAGACCGACATTAACAACAAGAAG
GTTCACTGCCGTACAGGCAGCTTAGAAA	GGAGGCCGAGGCGGAGTGGCTCGACAACCTGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACACGCCATCGCTCTCTGAACTAATGGCTTTC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGAAATGTCTTGCATAGTGAGTCCTTAAATAA
GTTCACTGTCGTACAGGCAGTAGGCTCA

>NZ_CP010377|1|1|1581650-1581917|CRT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGATGGTTAAGACCGACATTAACAACAAGAAG
GTTCACTGCCGTACAGGCAGCTTAGAAA	GGAGGCCGAGGCGGAGTGGCTCGACAACCTGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACACGCCATCGCTCTCTGAACTAATGGCTTTC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGAAATGTCTTGCATAGTGAGTCCTTAAATAA
GTTCACTGTCGTACAGGCAGTAGGCTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010377.1\|WP_006809416.1\|1582151_1583120_-\|NADH-oxidoreductase	unknown	unknown	gnl\|CDD\|236735
NZ_CP010377.1\|WP_006809410.1\|1589761_1590877_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP010377.1\|WP_006809419.1\|1578424_1579426_-\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710
NZ_CP010377.1\|WP_154817112.1\|1589591_1589765_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010377.1\|WP_039273496.1\|1569477_1570275_+\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|224900
NZ_CP010377.1\|WP_026080729.1\|1586003_1586699_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP010377.1\|WP_006809420.1\|1576977_1578414_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187556
NZ_CP010377.1\|WP_006809408.1\|1592884_1593106_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NZ_CP010377.1\|WP_039273498.1\|1570534_1573246_+\|glycoside-hydrolase	unknown	unknown	gnl\|CDD\|119365
NZ_CP010377.1\|WP_039273501.1\|1586990_1588649_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP010377.1\|WP_000664395.1\|1568995_1569481_+\|type-II-secretion-system-protein-M	unknown	unknown	gnl\|CDD\|377391
NZ_CP010377.1\|WP_006809415.1\|1583130_1584783_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP010377.1\|WP_006809426.1\|1566839_1567850_+\|type-II-secretion-system-minor-pseudopilin-GspK	unknown	unknown	gnl\|CDD\|377165
NZ_CP010377.1\|WP_006809418.1\|1579464_1581183_-\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
NZ_CP010377.1\|WP_006809423.1\|1573350_1573791_+\|type-III-secretion-system-invasion-protein-IagB	unknown	unknown	gnl\|CDD\|185228
NZ_CP010377.1\|WP_006809409.1\|1590873_1592814_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP010377.1\|WP_006809414.1\|1584927_1585827_-\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287
NZ_CP010377.1\|WP_032673746.1\|1575871_1576885_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_CP010377.1\|WP_006174393.1\|1593373_1593694_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP010377.1\|WP_000815757.1\|1567865_1568999_+\|general-secretion-pathway-protein-GspL	unknown	unknown	gnl\|CDD\|273768

Protein	Function_ID	Function_description	E-value
NZ_CP010377.1\|WP_006809416.1\|1582151_1583120_-\|NADH-oxidoreductase	gnl\|CDD\|236735	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional.	0
NZ_CP010377.1\|WP_006809410.1\|1589761_1590877_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP010377.1\|WP_006809419.1\|1578424_1579426_-\|low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	0
NZ_CP010377.1\|WP_039273496.1\|1569477_1570275_+\|prepilin-peptidase	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	7.89757e-42
NZ_CP010377.1\|WP_026080729.1\|1586003_1586699_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	1.82782e-146
NZ_CP010377.1\|WP_006809420.1\|1576977_1578414_-\|SDR-family-oxidoreductase	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	7.45379e-142
NZ_CP010377.1\|WP_006809408.1\|1592884_1593106_-\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	9.14248e-48
NZ_CP010377.1\|WP_039273498.1\|1570534_1573246_+\|glycoside-hydrolase	gnl\|CDD\|119365	cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.	7.49587e-124
NZ_CP010377.1\|WP_039273501.1\|1586990_1588649_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP010377.1\|WP_000664395.1\|1568995_1569481_+\|type-II-secretion-system-protein-M	gnl\|CDD\|377391	pfam04612, T2SSM, Type II secretion system (T2SS), protein M. This family of membrane proteins consists of Type II secretion system protein M sequences from several Gram-negative (diderm) bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the T2SM (EpsM) protein interacts with the T2SL (EpsL) protein, and also forms homodimers.	1.4198e-28
NZ_CP010377.1\|WP_006809415.1\|1583130_1584783_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP010377.1\|WP_006809426.1\|1566839_1567850_+\|type-II-secretion-system-minor-pseudopilin-GspK	gnl\|CDD\|377165	pfam03934, T2SSK, Type II secretion system (T2SS), protein K. Members of this family are involved in the Type II protein secretion system. The T2SK family includes proteins such as ExeK, PulK, OutX and XcpX.	4.02029e-60
NZ_CP010377.1\|WP_006809418.1\|1579464_1581183_-\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP010377.1\|WP_006809423.1\|1573350_1573791_+\|type-III-secretion-system-invasion-protein-IagB	gnl\|CDD\|185228	PRK15328, PRK15328, type III secretion system invasion protein IagB.	6.17962e-89
NZ_CP010377.1\|WP_006809409.1\|1590873_1592814_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP010377.1\|WP_006809414.1\|1584927_1585827_-\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	1.20691e-116
NZ_CP010377.1\|WP_032673746.1\|1575871_1576885_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	8.07531e-53
NZ_CP010377.1\|WP_006174393.1\|1593373_1593694_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	9.90991e-48
NZ_CP010377.1\|WP_000815757.1\|1567865_1568999_+\|general-secretion-pathway-protein-GspL	gnl\|CDD\|273768	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L. This model represents GspL, protein L of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	4.05954e-40

>NZ_CP010377.1|WP_006809418.1|1579464_1581183_-|ubiquinone-dependent-pyruvate-dehydrogenase
MKQTVAAYIAKTLEQAGVKRIWGVTGDSLNGLSDSLNKMKTIEWMPTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGDVALKAAPETATTHWYSAPQPTITPADEELKKLAQLLRYSSNIALMCGSGCAGAHTELVEFAGKLKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLILLGTQFPYRAFYPTDAKIIQIDINPGSIGAHSKVDMALIGDIKSTLAALLPLLEEKTDRKFLDKALSDYRDARKGLDDLAKPSDKAIHPQYLAQQISHFADDDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAKATAPERQVVAMCGDGGFSMLMGDFLSVAQMKLPLKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVDDALQRAFAIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELAKTNWLR
>NZ_CP010377.1|WP_006809419.1|1578424_1579426_-|low-specificity-L-threonine-aldolase
MIDLRSDTVTRPGRAMLEEMMAAPVGDDVYGDDPTVNELQRYAAELSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQGAHNYLYEAGGAAVLGSIQPQPIDAAPDGSLPLDKVAAKIKADDIHFARTKLLSLENTHNGKVLPREYLKAAWDFTRERKLGLHVDGARIFNAVVEYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNADYIRRANRWRKMTGGGMRQAGILAAAGLYALKNNVSRLKDDHDNAAWMATQLREIGADVMRHDTNMLFVRVGDEHAAALGEFMKARGVLINASPVVRLVMHLDVNREQLTEVVKHWQAFLQR
>NZ_CP010377.1|WP_006809420.1|1576977_1578414_-|SDR-family-oxidoreductase
MPQRILVLGASGYIGQHLTTALSQQGHQVLAAARNTERLQKRHLPGVTCHNVDLNWPKELPALLEGVDTLYYLVHSMGEGGDFIAHERQVAMNVRDALLQTPVKQVIFLSSLQAPEHEQSDHLRARQLTADTLRSANIPVTELRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPAEQHRVLEAAGPEVLSYQAQFEHFMRVSGRRRWLIPVPFPTRWISVWFLNVITSVPPTTAKALIQGLKHDLLADDRALRTLIPQELIRFDDAVRNTLKEEEKLVNSSDWGYDAQAFARWRPEYGYYPKQAGCTVKTSASLHALWEVVNQIGGKERYFFGNILWQTRGALDLLVGHRLAKGRPAHPYLQVGDAVDSWKVIIVEPEKQLALLFGMKAPGLGRLCFTLKDKGDHRELDVRAWWHPHGMPGLFYWLLMIPAHLFIFRGMAKRIAQLAEQKQEGK
>NZ_CP010377.1|WP_032673746.1|1575871_1576885_-|NAD(P)-dependent-oxidoreductase
MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLQKMGAEFVHADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQEAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIQEDFRPARFACEFARSKAAGEEVIDLLAQSNPHTRFTVLRPQSLFGPHDKVFIPRLAQMMHHYGSVLLPRGGDALVDMTYYENAVHAMWLASQPDCDKLVSGRAYNITNGEPCTLRSIVQRLIDELKIDCRIRSVPYPMLDMIARSMERFGSKSAKEPALTHYGVSKLNFDFTLDISRAENELGYKPIVSLDEGIVRTAAWLRDHGKLHR
>NZ_CP010377.1|WP_006809423.1|1573350_1573791_+|type-III-secretion-system-invasion-protein-IagB
MKKLILLLLIISQSALANCWDKAAHYYHVDPYLLYAIANVESGMNPYAVGQNRDGTRDVGLMQINSSHFTALESRGIDEYRLMTEPCTSIMVGASILSGMIKVYGYNWEAVGAYNAGLKKENYPQRMKYARKVWTKYQQLKLAARY
>NZ_CP010377.1|WP_039273498.1|1570534_1573246_+|glycoside-hydrolase
MKFMKPKYLALFIAAATSSAFAAAPGAPTIGYGNDKFALVEVDQAAQDYNNLVKVHNDGVDVKVEWNVWSGDAPTSAKVLLDGQTVWTGAGGATGSATFKVKKGGRYQEQVEVCNASGCAKSASKLIIVADTDGSHLLPLNTTMQENNKAFAKHTDKVVAAYFPEWGVYDRNFPVDKIPAANLNHILYGFIPICGGDGINDGLKTVEGGNSFRVLQNDCKGRPDYTVAIHDPWAALQKPQAGVSNWDDPYKGNFGQLMALKKAHPDLKVLPSIGGWTLSDPFFHMGDPAIRARFVSSVKEFLQTWKFFDGVDIDWEFPGGGGVSENLGNPQQDKATYTALMHDLRTMLNELSAQTGRTYELTSAIGAGRDKIEDVDYTAAQQYLDHIFLMSYDFYGGWSNTVLGHQAALRAPAWRPDTDYTTENGVNALLSQGVQPGKIVVGAGMYGRGWTGVHGYTGNNPFTGTATGMVKGTWEPGVVDYRQIVNEYKGKPGWEYGYDADAEAPYVFNKTTGDLITYEDARSTTAKGKYVLANKLGGLFAWSIDSDTGDILNAMNESLLGGSTPVDPVVTNHASIASSADQNVSGPATVTLDGSASSDPDGDAITYKWTQVSGPSVTINNSTKAKATFNVAAATTDQTMTFRLTVTDAKGLSNAIDVQVVNKAPKANQAPVVNAMEAVTLQAGETYSLHAQAADPDGDALTYAWSVPADMHATGTDTANVSITAPDVTSTSTYTLSVVVGDGKTSVQSNVQVTVNPKPADVTPPADDVTPPADDVTPPADDVTPPSDEGSATNSCDAPVDANASKYAAWDASKIYNNGDTVSFDHLVWKAKYWTQGNQPGFGVDAWELVSNVKMNWRSDMVYNGGDTTTYEGNVYRAKWWTSGDNPANSDVWVKEGPSTDCK
>NZ_CP010377.1|WP_039273496.1|1569477_1570275_+|prepilin-peptidase
MNTVVLMWDTCPLGFPIMSAILGGIAGSFLGVVAERVPGMVMEVEGSGNLLFPASHCPVCKHTLAAWENIPLVSWLLLRGRCHQCGTAIPLRIFLVELFSALFCGVTAWVMPDLQSLFSLWLLAAFLLPLAMIDWQHQLLPDCLTQPLLWAGLVLHAFDHTLPLRDALFGAVAGYLSLWLLYWAFRLMAGREGLGYGDFKLLAALGAWCGWQALPSIELAAALSGIVGYFAANNLNKNNLTISFGPYLAFAGIVVFISQQLTFTF
>NZ_CP010377.1|WP_000664395.1|1568995_1569481_+|type-II-secretion-system-protein-M
MKERIAQLKSRYQNYSAREKVILKLCAVAIFGAAVYYAGVIPLDNMIQNSKSTLKRQKETLNWMRSEIDKNHLQVQLVKTDNPRTVVENSAHEINLSLTDVRQEGQTLSFVVNRVNVYELKSWLREINQTSGVRLQKMNLTPVDHLSDVKAQVELTWSKSA
>NZ_CP010377.1|WP_000815757.1|1567865_1568999_+|general-secretion-pathway-protein-GspL
MKQVLFVRPDSREGGKIMWCESGSERVEVLDTLEALADHPLAARVCLLLPASDMIFRHFTLPKKVASQAMAFSWMAEETLIGDVDNLHWTVLHKKGAEVDAVAMDADRLRAALARCQDAGLKVIQALPDAWLLPVTAGGSTLVAQEGSYWLRFSPHVAGEMEASLLPLLMQKTGEGEVCCYGDAPAGVNVDVQYAWQHPLVLIQPQWQSCRVNMLHSEFSPKASNGRAAKSMKVAMATAGLLSVGLLLGPRIAMAWMLVQQENQLQEEIVQVYQHHFPSMRQQTNIKYHFGQNLKKQSKGIFLQLEELESARQAVPAMEIDLLEYDAQQNRLTLSVSAQNQPALQAFVNQTSENFDFSLQPVSTTEPYTAMIAGKHK
>NZ_CP010377.1|WP_006809426.1|1566839_1567850_+|type-II-secretion-system-minor-pseudopilin-GspK
MSRIHKQKGVALLVVLILLVMMSALAAKISQQFCRNLQKTHYQVSQQQLRWAMLAQEKVVKDRLQTDASGESKPLSLDGDWHQPLETRGEDYTVVSQVEDAQDCFNVNNLLTADAAPQGQSAPAVPEKPRKAQIIEQLLTESGLSQSTAEEVYFQLVDYLDGDSTTAKEGAESDAWAGVVPARQPANQMMRNIAEIKRLPAFPVAAYPKVSKLLCALPDAASKVDVNTLQPEQAAVLAAMFPGKLTRDDAVRLLDSRPESGWENLEAFSKALEQTFPQLKDDLPQVADQFSLNSRYFRVNYSGNTDELTLRVVSQLQVNNEAGEIVTWQRRYRMIE
>NZ_CP010377.1|WP_006809416.1|1582151_1583120_-|NADH-oxidoreductase
MTMPTSQCPWRMQVHHIHQETPDVWTLSLLCHDYYPYRAGQYALVSIRNSADTLRAYTISSTPGVSEYITLTVRRIDDGAGSRWLTRDVKRGDYLWLSDAQGEFTCDDKPEDKFLLLAAGCGVTPIMSMRRWLAKNRPQADVQVIFSVRSPEDVIFAEEWRNYPVTLVAENNATHGFVAGRLSRELLQSVPDIANRTVMTCGPAPYMEIVEKEVKALGVTRFFKEQFFTPVAEAATSGMKFTKLQPTQTFFGRVGTTLLEALESNNVPVVAACRAGVCGCCKTKVVSGEYTVTSTMTLTDAEIAEGYVLACSCHPQGDLVLA
>NZ_CP010377.1|WP_006809415.1|1583130_1584783_-|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAFKAREYGIVDHYVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLNADASARVDNPMAELQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNAIYAQYHKIMAWLGTWPSDMNALLECSMEIGQMNFRVMSILDAGETSTYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLKQTEGTGVNVYTHGEMLPAHGYPELRKFKHLIGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVSHLEGDDFGPVIAQAQQMAGFPYSEIPHLITVGFGRETLLGAADSLIDLVSREKLRHIFLIGGCDGARGERNYFTDFATRVPEDCLILTLACGKYRFNKLDFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVTNIVTGPTAPGFLTPDLLAVLNEKFGLRSVTNVEDDMKQLLSA
>NZ_CP010377.1|WP_006809414.1|1584927_1585827_-|lysine-exporter-LysO-family-protein
MFSGLLIILLPLIVGYLIPLRHESALKLINRFLSWIVYVILFFMGISLAFLDNLATNLLSILHYSAVTVVVILLCNIAALFWLERTIPWKNHHHQEKLPSRIAMALESLKLCGVVVLGFLLGLTGWAFLQHATEASEYTLIFLLFLIGIQLRNNGMTLKQIVLNRRGMIVAVIVVASSMVGGVINAFILDLPLKTSLAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGLEMVPAAIVHGFILSLLVPILMAFFSA
>NZ_CP010377.1|WP_026080729.1|1586003_1586699_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFVGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKDIIGYIIAQVIGGIIAAAVLYVIASGKAGFDAAASGFASNGFGEHSPGGYSMLSAIVIEIVLTAGFLLVIHGATDKYAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWLFWVMPIIGGILGGVLYRTLLEKRD
>NZ_CP010377.1|WP_039273501.1|1586990_1588649_+|ATP-dependent-endonuclease
MLLERVEIVGFRGINRLSLQLEQNNVLIGENAWGKSSLLDALTLLLSPEENLYHFVHDDFWFPPGDVNGREKHLHIILTFRESEPGRHRVRRFRPMSPCWVPCEDGFHRIFYRLEGEMAQNDGVLTLREFLDEKGNPIPLDNIDELARHLIRLSPVLRLRDARFMRRIRNGTVPNMPEVEVTARELDFLARELVSRPQNLTDGQIRQGLSAMVQLLEHYFSEQGTGQARHRLMRRRSHDEQRSWRYLDIINRMIDRPGGRTHRVILLGLFSTLLQAKGTVRLDRDARPLLLVEDPETRLHPIMLSVAWHLLNLLPLQRVTTTNSGELLSLTPVEYVCRLVRESSRVTAYRLGPGGLNAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLIKFARRMGIELHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPAMDMEHFMYRQGFDDVFHRVAMIPVDVPMNMRRVIAKAIHRSSKPDLAIEVATEAGRRGVESVPTLLRKMFSRVLWLARGRAD
>NZ_CP010377.1|WP_154817112.1|1589591_1589765_+|hypothetical-protein
MEDMLDPASGGISLFQQALYQHRVNNSRRLRGSGVSLRSGLDKINGDDSQNNYLEYL
>NZ_CP010377.1|WP_006809410.1|1589761_1590877_+|macrolide-transporter-subunit-MacA
MNLKGKRRKLFLLLAVVVLAGGFWLWKVLNAPVPQYQTLIVRPGELQQNVLATGKLDALRKVDVGAQVSGQLKTLSVEIGDKVKKGQLLGVIDPEQAQNQIREVEATLMELRAQRAQAQAERNLAQVTLTRQQALAKTQAISKQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTQIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPQTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPQGVLRLDMTAQVHIQLTGVKNVLTVPLSALGESAGDNRYKVKVLRNGEIREREVVIGARNDTDVVVVKGLEEGEEVVTSESLPGAAQ
>NZ_CP010377.1|WP_006809409.1|1590873_1592814_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTALLELNDIRRNYPSGDGPVEVLKGISLRVEAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVSTLDGDALARLRREHFGFIFQRYHLLSHLSAAQNVEVPAVYAGVERKKRLERAKGLLTRLGLAERVDYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDQGHTVIIVTHDPQVAAQAERIIEIRDGELVSNPPPRQSRAAAPKEALPASTGWGQFSSGFREALTMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPGKDFGDDEPQYQQALKYDDLAAIQKQPWVNSATPAVSQNLRLRYGNIDVAASANGVSGDYFNVYGMTFSEGATFNAEQLAGRAQVVVLDANSRRQLFPNKTRVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYSTISGRIMGQSWLNSITVRVKEGYDSALAEQQLERLLTLRHGKKDFFTWNMDGLLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAMGIALSMMIAFALQLFLPGWEIGFSPMAILTAFLCSTFTGILFGWLPARNAARLDPVDALARE
>NZ_CP010377.1|WP_006809408.1|1592884_1593106_-|cold-shock-like-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASLIVPVEAETVA
>NZ_CP010377.1|WP_006174393.1|1593373_1593694_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEDKVRDALKPPSMYKVMLMNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYRGKAICGIFTAEVAETKVAMVNDYARENEHPLLCTLEKA

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Crispr_ID: NZ_CP010377_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010377_2

1597096-1597249

Orphan

I-F

Consensus_repeat	Method
CGTTTATGTTCACTGCCGTACAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP010377_2

>merge|NZ_CP010377|2|1597096-1597249|PILER-CR,CRISPRCasFinder
GTTTCTGTTCACTGCCGTACAGGCAGCTTAGAAACGACCGTAAGCGGATGGATTCAGGGCGTTAAGGTTCACTGCCGTACAGGCAGCTTAGAAAATGAAGATTGCATTGAACATGTTCACGTCTGTGTTCACTGCCGTACAGGCAGCTTAGAAA

>NZ_CP010377|2|2|1597096-1597249|PILER-CR
GTTTCTGTTCACTGCCGTACAGGCAGCTTAGAAAC	GACCGTAAGCGGATGGATTCAGGGC
GTTAAGGTTCACTGCCGTACAGGCAGCTTAGAAAA	TGAAGATTGCATTGAACATGTTCAC
GTCTGTGTTCACTGCCGTACAGGCAGCTTAGAAA

>NZ_CP010377|2|2|1597102-1597249|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	CGACCGTAAGCGGATGGATTCAGGGCGTTAAG
GTTCACTGCCGTACAGGCAGCTTAGAAA	ATGAAGATTGCATTGAACATGTTCACGTCTGT
GTTCACTGCCGTACAGGCAGCTTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010377.1\|WP_006809400.1\|1602276_1603245_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP010377.1\|WP_006809407.1\|1593721_1596001_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP010377.1\|WP_039273503.1\|1598674_1600396_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP010377.1\|WP_154817112.1\|1589591_1589765_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010377.1\|WP_006809397.1\|1608208_1608823_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP010377.1\|WP_039273507.1\|1604418_1608081_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236669
NZ_CP010377.1\|WP_006809408.1\|1592884_1593106_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NZ_CP010377.1\|WP_006809395.1\|1610268_1611561_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP010377.1\|WP_000228469.1\|1603788_1604283_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP010377.1\|WP_006809403.1\|1597924_1598629_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP010377.1\|WP_039273501.1\|1586990_1588649_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP010377.1\|WP_006809396.1\|1608832_1610176_+\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355
NZ_CP010377.1\|WP_039274736.1\|1596481_1596925_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010377.1\|WP_006809410.1\|1589761_1590877_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP010377.1\|WP_006809409.1\|1590873_1592814_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP010377.1\|WP_006809414.1\|1584927_1585827_-\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287
NZ_CP010377.1\|WP_002211347.1\|1597421_1597640_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP010377.1\|WP_006174393.1\|1593373_1593694_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP010377.1\|WP_039273505.1\|1600395_1602162_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP010377.1\|WP_026080729.1\|1586003_1586699_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453

Protein	Function_ID	Function_description	E-value
NZ_CP010377.1\|WP_006809400.1\|1602276_1603245_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP010377.1\|WP_039273503.1\|1598674_1600396_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP010377.1\|WP_006809395.1\|1610268_1611561_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP010377.1\|WP_006809397.1\|1608208_1608823_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	3.03181e-116
NZ_CP010377.1\|WP_039273507.1\|1604418_1608081_+\|hypothetical-protein	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP010377.1\|WP_006809408.1\|1592884_1593106_-\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	9.14248e-48
NZ_CP010377.1\|WP_006809407.1\|1593721_1596001_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP010377.1\|WP_000228469.1\|1603788_1604283_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	1.61477e-117
NZ_CP010377.1\|WP_006809403.1\|1597924_1598629_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	7.24811e-138
NZ_CP010377.1\|WP_039273501.1\|1586990_1588649_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP010377.1\|WP_006809396.1\|1608832_1610176_+\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP010377.1\|WP_006809410.1\|1589761_1590877_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP010377.1\|WP_006809409.1\|1590873_1592814_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP010377.1\|WP_026080729.1\|1586003_1586699_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	1.82782e-146
NZ_CP010377.1\|WP_002211347.1\|1597421_1597640_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	2.9822e-48
NZ_CP010377.1\|WP_006174393.1\|1593373_1593694_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	9.90991e-48
NZ_CP010377.1\|WP_039273505.1\|1600395_1602162_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP010377.1\|WP_006809414.1\|1584927_1585827_-\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	1.20691e-116

>NZ_CP010377.1|WP_039274736.1|1596481_1596925_+|hypothetical-protein
MNMENQTISQLYSELSLTPDLPTLVERCNLLTEILLDCHSLPQTQPICRCLGAYLDVVKTELAESMCDFQVVEFDDEAERLKEKEWLLEDTETKCDYCRALNHVLLVSHFDREMLPHLTGLLHDITHSMAADVAAPECGKPAIHIIN
>NZ_CP010377.1|WP_006809407.1|1593721_1596001_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPNQASDPSGQINSNEEQAGGEDRMENFTTNLNQLARVGGIDPLIGRDKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVIADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVMGSTTYQEFSNIFEKDRALARRFQKIDVTEPSVDETVQIINGLKTKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPASKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLRTLGNRLKMLVFGQDKAIEALTEAIKMARAGLGHDHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTEVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVGLDQAKNELTYDFQSAAKHKPEAAH
>NZ_CP010377.1|WP_006174393.1|1593373_1593694_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEDKVRDALKPPSMYKVMLMNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYRGKAICGIFTAEVAETKVAMVNDYARENEHPLLCTLEKA
>NZ_CP010377.1|WP_006809408.1|1592884_1593106_-|cold-shock-like-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASLIVPVEAETVA
>NZ_CP010377.1|WP_006809409.1|1590873_1592814_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTALLELNDIRRNYPSGDGPVEVLKGISLRVEAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVSTLDGDALARLRREHFGFIFQRYHLLSHLSAAQNVEVPAVYAGVERKKRLERAKGLLTRLGLAERVDYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDQGHTVIIVTHDPQVAAQAERIIEIRDGELVSNPPPRQSRAAAPKEALPASTGWGQFSSGFREALTMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPGKDFGDDEPQYQQALKYDDLAAIQKQPWVNSATPAVSQNLRLRYGNIDVAASANGVSGDYFNVYGMTFSEGATFNAEQLAGRAQVVVLDANSRRQLFPNKTRVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYSTISGRIMGQSWLNSITVRVKEGYDSALAEQQLERLLTLRHGKKDFFTWNMDGLLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAMGIALSMMIAFALQLFLPGWEIGFSPMAILTAFLCSTFTGILFGWLPARNAARLDPVDALARE
>NZ_CP010377.1|WP_006809410.1|1589761_1590877_+|macrolide-transporter-subunit-MacA
MNLKGKRRKLFLLLAVVVLAGGFWLWKVLNAPVPQYQTLIVRPGELQQNVLATGKLDALRKVDVGAQVSGQLKTLSVEIGDKVKKGQLLGVIDPEQAQNQIREVEATLMELRAQRAQAQAERNLAQVTLTRQQALAKTQAISKQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTQIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPQTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPQGVLRLDMTAQVHIQLTGVKNVLTVPLSALGESAGDNRYKVKVLRNGEIREREVVIGARNDTDVVVVKGLEEGEEVVTSESLPGAAQ
>NZ_CP010377.1|WP_154817112.1|1589591_1589765_+|hypothetical-protein
MEDMLDPASGGISLFQQALYQHRVNNSRRLRGSGVSLRSGLDKINGDDSQNNYLEYL
>NZ_CP010377.1|WP_039273501.1|1586990_1588649_+|ATP-dependent-endonuclease
MLLERVEIVGFRGINRLSLQLEQNNVLIGENAWGKSSLLDALTLLLSPEENLYHFVHDDFWFPPGDVNGREKHLHIILTFRESEPGRHRVRRFRPMSPCWVPCEDGFHRIFYRLEGEMAQNDGVLTLREFLDEKGNPIPLDNIDELARHLIRLSPVLRLRDARFMRRIRNGTVPNMPEVEVTARELDFLARELVSRPQNLTDGQIRQGLSAMVQLLEHYFSEQGTGQARHRLMRRRSHDEQRSWRYLDIINRMIDRPGGRTHRVILLGLFSTLLQAKGTVRLDRDARPLLLVEDPETRLHPIMLSVAWHLLNLLPLQRVTTTNSGELLSLTPVEYVCRLVRESSRVTAYRLGPGGLNAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLIKFARRMGIELHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPAMDMEHFMYRQGFDDVFHRVAMIPVDVPMNMRRVIAKAIHRSSKPDLAIEVATEAGRRGVESVPTLLRKMFSRVLWLARGRAD
>NZ_CP010377.1|WP_026080729.1|1586003_1586699_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFVGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKDIIGYIIAQVIGGIIAAAVLYVIASGKAGFDAAASGFASNGFGEHSPGGYSMLSAIVIEIVLTAGFLLVIHGATDKYAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWLFWVMPIIGGILGGVLYRTLLEKRD
>NZ_CP010377.1|WP_006809414.1|1584927_1585827_-|lysine-exporter-LysO-family-protein
MFSGLLIILLPLIVGYLIPLRHESALKLINRFLSWIVYVILFFMGISLAFLDNLATNLLSILHYSAVTVVVILLCNIAALFWLERTIPWKNHHHQEKLPSRIAMALESLKLCGVVVLGFLLGLTGWAFLQHATEASEYTLIFLLFLIGIQLRNNGMTLKQIVLNRRGMIVAVIVVASSMVGGVINAFILDLPLKTSLAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGLEMVPAAIVHGFILSLLVPILMAFFSA
>NZ_CP010377.1|WP_002211347.1|1597421_1597640_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLDTLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP010377.1|WP_006809403.1|1597924_1598629_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHNIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPGQFHLSRSMKRFHAKSPFRVTLNHAFGQVIEGCAEDRHEGTWITRDIIIAYHQLHELGYAHSIEVWDGSNLVGGMYGVAQGTLFCGESMFSRATNASKTALLVFSQEFARRGGQLMDCQVLNEHTASLGAVEISRRHYIEHLEQCRKETLPRDFWVPRTLFMPNA
>NZ_CP010377.1|WP_039273503.1|1598674_1600396_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLTLGIVLAIVTLLASIGLLTLSGWFLSASAAAGFAGLYSFNYMLPAAGVRGTAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARFRQGELLNRVVADVDTLDHLYLRVISPMVGAFVVIVVVTLGLSFLDVPIALTLGGIMLMTLIILPPLFYRAGKTTGENLTRLRGEYRQQLTAWLQGQAELTIFGASKRYRARMENTELNWHEAQRRQSELTAFSQALMMLIGGIAVIAMLWMASGGVGGNAQPGPLIALFVFCALAAFEALAQVTGAFQHLGQVIASALRITDIAEQEPEVTFSAGHTAVPEQVALTLSNVTFAYNNQAQNALEEISLSVDAGQRIAILGRTGCGKSTLLQLLTRAWDPQQGEIRFNDIPLSGFSEAALRKTVSVVPQRVHLFSATLRDNLLLAAPDASDDTLRAMLEQVGLHKLLEDDGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLMLLDEPTEGLDATTESQILDLLATVMKGKTVLMVTHRLRGLVNFDQIIVMDNGHIIEQGSHAELLAKQGRYYQFKQRL
>NZ_CP010377.1|WP_039273505.1|1600395_1602162_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MEKTRQQELTRWLKQQSVLSRRWLMISRILGFISGLLIVAQAWLLARILNHMIMENIPREALLLPFIVLVLVFVLRAWVVWLRERVGFHVGQHIRYEIRRKVLDRLSEAGPAWIQGKPAGSWATLILEQIDDMHDYYARYLPQMALAVFVPLLIVIAIFPVNWVAALILLGTAPLIPLFMAMVGMGAADANRRNFLALGRLSGHFLDRLRGMETLRIFGRGEAETENIRLASQDFRQRTMEVLRMAFLSSGVLEFFTSLSIALVAVYFGFSYLGALDFGHYGTAVTLSAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFLETPLAHPERGEVTLNTNDPVIVEAQDFSVLSPEGKVLAGPLNFTLPAGQRVVLVGTSGSGKSSLLNALSGFMAYTGSLRINKTELRELDPDAWRKQLSWVGQNPQLPAPTLRENVLLARPDARENELQSVLDRAWVSEFLPLLAQGVDTVIGDQSAGLSVGQAQRVAVARALLNPCSLMLLDEPAASLDAHSEQRVMDALNAASRQQTTLMVTHQLEGIADWDQIWVMENGHIVEQGDYAALVAAQGPFATLLANRQEDI
>NZ_CP010377.1|WP_006809400.1|1602276_1603245_-|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEILFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLANIASEVHLIHRRDTFRAEKILIKRLMDKVASGNIVLHTNRTLEEVTGDQMGVAGLRIRDTQNTDNVETLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLAEQGK
>NZ_CP010377.1|WP_000228469.1|1603788_1604283_+|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNAAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP010377.1|WP_039273507.1|1604418_1608081_+|hypothetical-protein
MSQEYTEDKEVTLSKLSSGRRLLEALLIVIALFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGVPGAWLADTLFFIFGVMAYTLPVIIIGGCWFAWRHRQNDDYIDYFAVSLRLIGALALILTSCGLAAINADDIWYFASGGVIGSLLSSALQPMLHSSGGTLALLCIWAAGLTLFTGWSWVSIAEKIGSFILTLLTFASNRTRRDDTWVDEDEYEDEYEEDDAPDERRESRRARILRGALARRQRVAEKFANPLGRKTDAALFSGKRMDEDEQIEYRGAAVDPDDVLFSGHRATPGEYDEYDPLLNGHSVTEPVAAAAAATTAAQAHVAPVEAVMPSSPVPAPESAIQQPQVDWQTAPGVHTPEPTIAPEPESYIPVQQEQWQQPYQPPEPASEPQQPYQAYTPEPAVSEQPYVAPAPEPEAVEEAKPSRPPLYYFEEVEERRAREREQLAAWYQPVPEPVQEPVAKAPSASVAPVDPTPAVASGAETVKQATAAAAASAPLFSPVTDGAPRPQVKEGIGPQLPRPNRVRVPTRRELASYGIKLPSQRMAEEKARESDYEDDADELHQDELARQFAAQQTQRYGNEYQHDVHSQQDEDDAAEAELARQFAATQQQRYSGEQPSGATPFSLSDFEFSPMKDLVDDGPSEPLFTPSVMPEAEPVHQSPAPQAYAQPQQPALQAYAQPQTPAQPPQPQYQQPAPQPQESLIHPLLMRNGDSRPLQRPSTPLPSLDLLTPPPAEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNTKFRDNPSPLTVVLGKDIAGDPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWSVNEMERRYKLMSALGVRNLAGYNEKIAEAARMGRPIPDPYWKPGDSMDAQHPVLEKLPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQGGAESLLGMGDMLYSGPNSTSPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGGGGFDGGEELDPLFDQAVNFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP010377.1|WP_006809397.1|1608208_1608823_+|outer-membrane-lipoprotein-chaperone-LolA
MKKIAIACALLSSFVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGNAVQEGQGDLWVKRPNLFNWHMTQPDESVLVSDGKTLWFYNPFVEQATATWLKDATSNTPFMLIARNQSSDWQQYNIKQNGDEFVLTPKGSNGNLKQFTINVSSNGTINQFGAVEQDDQHSSYQLKSQQNGAVDASKFTFTPPQGVTVDDQRNK
>NZ_CP010377.1|WP_006809396.1|1608832_1610176_+|replication-associated-recombination-protein-RarA
MSNLSLDFSDNAFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTIFFIGATTENPSFELNSALLSRARVYLLKSLTTEDIEKVLTQAMEDKARGYGGQDIVLPDDTRRAIAELVNGDARRALNTLEMMADMAEVDDAGKRVLKQELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAAMSDARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEEYFPQEMAQTRYYHPTNRGLEGKIGEKLAWLAGQDQNSPIKRYR
>NZ_CP010377.1|WP_006809395.1|1610268_1611561_+|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLRALEERRKVLQVQTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDQAKAELDVLQAEIRDIALAIPNIPDDSVPVGKDENDNVEVKRWGTPREFDFEVRDHVTLGEIHAGLDFAAAVKLTGSRFVVMKGQIAHLHRALAQFMLDLHTEQHGYSETYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLDEEADSSNYALIPTAEVPLTNLVRDEIIDEDDLPIKLTAHSPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEESMDALEEMTGHAEKVLELLGLPYRRMALCTGDMGFGACKTFDLEVWVPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVLENYQLADGRIEIPEVLRPYMKGQQFIG

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Crispr_ID: NZ_CP010377_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010377_3

1972115-1972238

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010377_3

>merge|NZ_CP010377|3|1972115-1972238|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACAGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP010377|3|3|1972115-1972238|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CAGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010377.1\|WP_006809016.1\|1972398_1973772_-\|MdtK-family-multidrug-efflux-MATE-transporter	unknown	unknown	gnl\|CDD\|234981
NZ_CP010377.1\|WP_006809015.1\|1973997_1974639_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP010377.1\|WP_006809028.1\|1961587_1962274_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223836
NZ_CP010377.1\|WP_006809027.1\|1962257_1963004_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP010377.1\|WP_006809026.1\|1963003_1963819_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP010377.1\|WP_045284239.1\|1963820_1964651_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270407
NZ_CP010377.1\|WP_039273630.1\|1981826_1982585_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|366353
NZ_CP010377.1\|WP_039273619.1\|1968455_1970051_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP010377.1\|WP_006809013.1\|1976117_1977302_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP010377.1\|WP_003857665.1\|1966672_1966813_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010377.1\|WP_006809012.1\|1977415_1978327_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP010377.1\|WP_006809011.1\|1978344_1979370_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP010377.1\|WP_003857662.1\|1967793_1968429_+\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|238449
NZ_CP010377.1\|WP_006809022.1\|1966938_1967721_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293813
NZ_CP010377.1\|WP_039273627.1\|1979918_1981085_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP010377.1\|WP_003857632.1\|1979667_1979757_+\|YnhF-family-membrane-protein	unknown	unknown	unknown
NZ_CP010377.1\|WP_032673510.1\|1965208_1966615_+\|DUF1996-domain-containing-protein	unknown	unknown	gnl\|CDD\|370451
NZ_CP010377.1\|WP_006809009.1\|1981122_1981704_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP010377.1\|WP_039273624.1\|1974670_1975819_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP010377.1\|WP_032673508.1\|1970719_1971268_-\|DUF1440-domain-containing-protein	unknown	unknown	gnl\|CDD\|226008

Protein	Function_ID	Function_description	E-value
NZ_CP010377.1\|WP_006809016.1\|1972398_1973772_-\|MdtK-family-multidrug-efflux-MATE-transporter	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP010377.1\|WP_006809015.1\|1973997_1974639_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	8.49383e-121
NZ_CP010377.1\|WP_006809028.1\|1961587_1962274_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	8.7823e-45
NZ_CP010377.1\|WP_006809027.1\|1962257_1963004_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	4.25881e-48
NZ_CP010377.1\|WP_006809026.1\|1963003_1963819_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	5.40481e-137
NZ_CP010377.1\|WP_039273619.1\|1968455_1970051_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP010377.1\|WP_039273630.1\|1981826_1982585_-\|C40-family-peptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	1.45933e-42
NZ_CP010377.1\|WP_045284239.1\|1963820_1964651_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270407	cd13689, PBP2_BsGlnH, Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold. This group includes periplasmic glutamine-binding domain GlnP from Bacillus subtilis and its related proteins. The GlnP domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.60655e-108
NZ_CP010377.1\|WP_006809013.1\|1976117_1977302_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP010377.1\|WP_006809012.1\|1977415_1978327_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP010377.1\|WP_006809011.1\|1978344_1979370_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP010377.1\|WP_003857662.1\|1967793_1968429_+\|carbonic-anhydrase	gnl\|CDD\|238449	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	1.47181e-91
NZ_CP010377.1\|WP_006809022.1\|1966938_1967721_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293813	cd07727, YmaE-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YmaE and related proteins; MBL-fold metallo hydrolase domain. Includes the uncharacterized Bacillus subtilis YmaE and Nostoc all1228 proteins.Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry. .	6.15496e-53
NZ_CP010377.1\|WP_039273627.1\|1979918_1981085_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	6.85481e-99
NZ_CP010377.1\|WP_032673510.1\|1965208_1966615_+\|DUF1996-domain-containing-protein	gnl\|CDD\|370451	pfam09362, DUF1996, Domain of unknown function (DUF1996). This family of proteins are functionally uncharacterized.	2.82608e-30
NZ_CP010377.1\|WP_006809009.1\|1981122_1981704_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	9.3757e-137
NZ_CP010377.1\|WP_039273624.1\|1974670_1975819_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP010377.1\|WP_032673508.1\|1970719_1971268_-\|DUF1440-domain-containing-protein	gnl\|CDD\|226008	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown].	2.01491e-55

>NZ_CP010377.1|WP_032673508.1|1970719_1971268_-|DUF1440-domain-containing-protein
MTRSKVNLKILFWGTIIGGFMSSLIKSGTEANMPPRIAGEISPPAAHIDAWLGWAGINSHSLDYVYQGVTIPGAVMLYHWLFSFAFAFLYVLISAYWPKIRLWYGAAYGLIITIVMHGFLIPALGFRHPAYLNGEIGWLWNLNGYELWSEILGHICWSVSIEICLIAVLAYFARPIKGKWTI
>NZ_CP010377.1|WP_039273619.1|1968455_1970051_-|FAD-NAD(P)-binding-protein
MKKIAIIGSGPTGIYTFYSLLSNVAPLSITVFEKADQPGVGMPYSDEDNSRLMLANIASIEIPPVFITYLDWLKQQSPAHLARYNVDSEKLHDRQFLPRILLGEYFHDRFLAVVAEAKKAGFHVEVHPNAEVTDIKADADGVVLSVNDAPFSRRFDLAVVATGHVWPDEDEATRTWFPSPWSGLMDAKIRACEVGIMGTSLSGLDAAMAVVMQHGRFTDEQFVVNKGSEGLKITLMSRTGVLPEADFYCPIPYEPLSVLTESVAESEIAKGPDRLLDRIFALMVQELELADPHWCQSIALNTLTADTLRDVWFEDRKKHGPFTWAEANLKEVERNKREKRTVAWRYTVLRLHEVVQAIVPSLNERDRERFKSGLERVFIDNYAAIPPQSIRRLLALREAGIISVVALGDDYDLDISSDQTVITTSEKRYRFDVFIDARGQKPLKNKDIPFPSLRKQLAETGDDVPDVGEDYTLLAPASLRGRIAFGAIPWLMHDHPFVQGLSECAEIGKAMAKAAGKPASAVRRKLPFMEF
>NZ_CP010377.1|WP_003857662.1|1967793_1968429_+|carbonic-anhydrase
MQHIIEGFLSFQKEIFPQRKELFRSLASSQNPKALFISCSDSRLVPELVTQQEPGQLFVIRNAGNIVPPFGPEPGGVSATIEYAVVALGVTDIVICGHSNCGAMKAIADNADLEPMPAVSHWLRYSDAAKAVVEKKTWDKPIDKVNAMVQENVFAQLSNIKTHPSVAVGLRNNAIRLHGWVYDIESGKILALDKNTKSFVSLSENPEVFFE
>NZ_CP010377.1|WP_006809022.1|1966938_1967721_+|MBL-fold-metallo-hydrolase
MITLCKTCGTAYDERPDNCPICDDERQYVPVTGQAWTDFDSLTATHTNKWQQLEPQLFSIKTVPSFAINQRALLLCTPQGNILWDCIANLDPATRALVNALGGICAIAISHPHYYTTMQEWAAAFNAPIYLHASDRHWVMRDSPAIRFWEGDALEIMPSVTLLRLGGHFAGGTVLHWQSGDGVLLAGDILQVTPGKDAVSFMWSYPNMLPLPARTVESVTSRLTGKTYQRLYGAFEGQNISANADEIVQRSGQKYIACLR
>NZ_CP010377.1|WP_003857665.1|1966672_1966813_-|hypothetical-protein
MEIDLDNLVFNGLDEAEERNAERLDDADKKAQAIVADDDCGDACKI
>NZ_CP010377.1|WP_032673510.1|1965208_1966615_+|DUF1996-domain-containing-protein
MKRTVLTPALSATALLLAMQAAHAGPQAHVVCSYSHTLGDDAIMMYGMPNEAMLHDFFGNVHTDAYSSRESLRNQEKTTCDNKADSSAYWAPSLKLPDGTVVKPAYQKTYYQASNVDAWPLHPFPAGLSLLAGDHHGTAPNPHITFLCANGRGYTNKTGEVCGLRKANDAVQFNIGIQFPNCWDGVNLKPAHGLTNATYDTKGQCPSAFPVKIPTVNMNIAYVLPTISSLDTSKAQLSLDPIMHGSEREERWGSLYTAHADFMNGWTEDAARFMTDLCMNRGMDCGTTVPYGYSKAKANVWLSSMEPALSQPEPQVLLVQDNWQNGGRTKNSETLSLVKFHIPPLPAGQDPAQFKYRVRIYGGKVETNGADQIFFYPASNDWDPATVSWQSRPSCNYRSDAVLYLNHSREYRMVDVDKAVRKALAEGKTEISWYIGGDRQGNHYQFESASSPQSLILMLTGFSKTPEI
>NZ_CP010377.1|WP_045284239.1|1963820_1964651_-|ABC-transporter-substrate-binding-protein
MAAKMKGFKKRAQVLGLVAAWGLVSAQAQADRLADIKAAGVVKVATFDANPPFGSIDAKTHEIVGYDVDFAKALAKSLGVKLELVATNPANRIPLLQSGKADLIVADITITPERAQVIDFSTPYFVTGQQFLVPAKSPDKLDDYSRARIGAVKGTTGEQALHQRFPQSRVLSYDDIPLALTALRNGNVQAITQDSTILAGLLAQAPDKADFKILPDLLSKEEIGVGVKKGETALLKAVNDELVNLEKNGQAANIYDVWFGPGTPAPQPRNFKIEAR
>NZ_CP010377.1|WP_006809026.1|1963003_1963819_-|amino-acid-ABC-transporter-ATP-binding-protein
MLSGLFSHSAANAADFSRLEQASVEFRHVDKRYGDHPVLTDINLTIMPGEVVAILGPSGSGKSTLIRLINQLESLSGGEILVDHKPTGQLSGSRLRQLRSRVGFVFQQFNLYAHLTASQNITLALEHVHGWKPLPAQARALALLEKVGMLEKAHRYPAELSGGQQQRVAIARALASSPQIILFDEPTSALDPEMIGEVLFVMKTLAHSGITMIVVTHEMQFAREIADRIVFIDGGKILETAPPSQFFNQPSHPRARRFLQKVLDPLHQEQL
>NZ_CP010377.1|WP_006809027.1|1962257_1963004_-|amino-acid-ABC-transporter-permease
MPALDWQGVLAGQPLHWILSGFLTTLWVTLAGIMLASLLALFFMLLRLSGGHIGTSIVSGWVSLFRNTPLLVQLLFWYFAAWNGLPQGLREAVNADHSGSILPGDVWWFTPEFLCSAWGLGVFTSAFLIEEAESGLRSVPAGQREAALAQGLSSWRLFRYILLPQGLANAWQPVVGQYLNLMKLSSLASGIGFAELTYQVRQIESYNAHALEAFTVGTVLYLLTGMVSGSVLVRLGPHSGRKNHDPRI
>NZ_CP010377.1|WP_006809028.1|1961587_1962274_-|ABC-transporter-permease-subunit
MIPGFNVIVENLDYLLWGRAAAGEPGGVLLSLLMAAGAAALALPGGIVLACVAWRYPGVVRSALFAWAELIRGIPLIFVIFWMWYLLPLITGRDLPGATTVTLALAWFTAAAVMHSVLAGLRALPSGQNEAALSQGFSTQQTLWRVLLPQALRNILPSLVGIFISLLKDTSLAFIVNVPELTTVAGQVNNRVQIYPAAIFIFTGVIYYLLCCSLELLTKRWRVSQPAL
>NZ_CP010377.1|WP_006809016.1|1972398_1973772_-|MdtK-family-multidrug-efflux-MATE-transporter
MQKYMIEARQLLALAIPVIVAQVAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRDRVAHQVRQGFWLAGSVSVLIMIVLWNAGYIIRAMHNIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFGCMITYIKHARSMRDIRNDTTFSAPDWTLMTRLFQLGLPIALALFFEVTLFAVVALLVSPLGIIDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGFRLGQGSTLDAQTAARTGLGVGVCMAVCTALFTVLLREHIALLYNDNPEVVTLASHLMLLAAIYQISDSIQVIGSGVLRGYKDTRSIFFITFIAYWVLGLPCGYILALTDLVVDRMGPAGFWMGFIIGLTSAAIMMMLRMRFLQRQPSAVILQRAAR
>NZ_CP010377.1|WP_006809015.1|1973997_1974639_+|riboflavin-synthase
MFTGIVQGTAKVVSIDEKPNFRTHVVELPEYMLDGIETGASIAHNGCCLTVTEINGNQISFDLMKETLRITNLGELVVGDIVNVERAAKFSDEIGGHLMSGHIMTTAEVAKIVTSENNRQIWFKVQDPSLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLQRTTLGAKKLGQRVNIEIDPQTQAVVDTVERVLAAKEAAIIKAVEEE
>NZ_CP010377.1|WP_039273624.1|1974670_1975819_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWSRIVSELLGRAGITINGASPSDPQIKHPDFFKRVLQEGSLGLGESYMDGWWECERLDMFFSSVLRAGLEKQLPRHFKDTLRIASARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPLMQYSCGYWKKATTLEEAQQDKLQLICDKLQLQPGMRVLDIGCGWGGLAWFMAKHFGVSVVGVTISAEQQKMAQERCLGLDVDIRLQDYRDLNEQFDRIVSVGMFEHVGPKNYKTYFEVADRNLKPDGIFLLHTIGSKRTDNNVDPWINKYIFPNGCLPSVRQIANASEPHFIVEDWHNFGADYDTTLMAWHERFQAAWPEIADNYSERFKRMFSYYLNACAGAFRARDIQLWQVVFSRGIEHGLRVAR
>NZ_CP010377.1|WP_006809013.1|1976117_1977302_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPRKGFLVWLGGLSVLGFLATDMYLPAFAAMQEDLQTPAAAISASLSLFLAGFAFAQLLWGPLSDRFGRKPVLLLGLAIFAVGCLGMLWVRDAAWLLALRFIQAVGVCAAAVTWQALVTDYYPASRTNRIFATIMPLVGLSPALAPLLGSWILAHFDWQAIFATLFAITLVLMLPAFGLKPAHKKETHPDAKPITFTSLLRAKAYRGNVLIYAACSASFFAWLTGSPFILHDMGYSPAAIGLSYVPQTIAFLVGGYGCRAALQKWDGQQMLPWLLVLYALSVIATWGVGFIPGAGLAEILIPFCVMAIANGAIYPIVVAQALRPFPQATGRAAALQNTLQLGLCFLASLVVSALIATPLLTTTSVMLVTVALAGLGYRMQSSAHRAQTETSHA
>NZ_CP010377.1|WP_006809012.1|1977415_1978327_+|LysR-family-transcriptional-regulator
MWSDYSLEVVDAVARNGSFTGAAQELHRVPSAISYTVRQLEAWLAVPLFERRHRDVELTPAGAWFLKEGRSVIKKMQITREQCQQIANGWRGHLSIAVDNIVKPERTRQMIVDFYRHFSDVELRVSQEVFNGVWDALADGRAEMAIGATQAIPVGGRYAFRDMGMLSWTCVVARDHPLAALEGPLSDDTLRNWPSLVLEDTSRSLPKRITWLLDNQRRVVAPDWESSATCLSAGLCVGMVPVHFARPRIDVGEWVALTLENPFPDAACCLTWQQNDVSPAMAWLLDYLGDSETLNREWLRGPA
>NZ_CP010377.1|WP_006809011.1|1978344_1979370_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNIEKQRAYLSMMAQKRVDGLLVMCSEYPESVLSMLEEYRHIPMVVMDWGEARADFTDSVIDNAFEGGYMAGRYLVERGHREIGVIPGPLERNTGAGRLAGFMKAMEEALITVPENWIVQGDFEPESGYRAMQQIVSQPHRPTAVFCGGDIMAMGALCAADELGLRVPQDISVIGYDNVRNARFFTPALTTIHQPKDSLGETAFNMLMDRIVNKREQSQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP010377.1|WP_003857632.1|1979667_1979757_+|YnhF-family-membrane-protein
MSTDLKFSLFTTIVVLALIVAGGLTAALH
>NZ_CP010377.1|WP_039273627.1|1979918_1981085_+|MFS-transporter
MKINFPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAIGVMVGAPLMTLLLSHRARRNALIFLMAIFTLGNVLSAISPDYTTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTIANIGGVPAATWLGEAIGWRMSFLATAVLGVVAMVALFFSLPKGSAGERPEVRKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLHDITHATPLFVTAMLVLIGVGFSIGNYLGGKFADHSVSGTLKGFLTLLIVIMVAIPWLARNEVGAAIAMVVWGAATFAVVPPLQMRVMRVAHEAPGLSSSVNIGAFNLGNALGAAAGGAVISGGLGYSFVPVMGAIIAALGLLLVMMSGRKQPEAVCTAE
>NZ_CP010377.1|WP_006809009.1|1981122_1981704_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTDFEGKTLEEIVRSSDGGVFNNAAQVWNHTFYWHCLAPNAGGEPTGDLAAAINAAFGSFADFKAKFTDAAVKNFGSGWTWLVKEADGKLAIVSTSNAGTPLTTRATPLMTVDVWEHAYYIDYRNARPNYLEHFWALVNWEFVAKNFAA
>NZ_CP010377.1|WP_039273630.1|1981826_1982585_-|C40-family-peptidase
MARITKISMTLCALLFTTLSLTPAANASEQARHSAVQKTHLAKSTERKKKTTSKTVKKKTTAQTKKTASIKSKTLRSGTHKTTRKTASLVNEKCTVRKGHKTKCAKVTKLADVHKARMQKAQKTAMNKLMGQIGKPYRWGGTSPRTGFDCSGLVYYAYKDLVKFRIPRTANEMYHLRDAAPVNRGELQNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRSGQDIQITSLSEDYWVRHYVGARRVMTPKTIR

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP010377_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010377_4

2096450-2096558

Orphan

Consensus_repeat	Method
CTCTTTATATATACTTCCTTAATTCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010377_4

>merge|NZ_CP010377|4|2096450-2096558|CRISPRCasFinder
CTCTTTATATATACTTCCTTAATTCCTGAGGTGTCTTTAGTCCTTGACATTCGGTTCAACCTGTGAGTCACATCCGGTCCCCCTCTTTATATTTACTTCCTTAATTCCT

>NZ_CP010377|4|4|2096450-2096558|CRISPRCasFinder
CTCTTTATATATACTTCCTTAATTCCT	GAGGTGTCTTTAGTCCTTGACATTCGGTTCAACCTGTGAGTCACATCCGGTCCCC
CTCTTTATATTTACTTCCTTAATTCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010377.1\|WP_006808866.1\|2090960_2091272_-\|YebG-family-protein	unknown	unknown	gnl\|CDD\|377779
NZ_CP010377.1\|WP_006808865.1\|2091381_2091996_-\|Tat-proofreading-chaperone-DmsD	unknown	unknown	gnl\|CDD\|236938
NZ_CP010377.1\|WP_006808858.1\|2104122_2104833_+\|YnfC-family-lipoprotein	unknown	unknown	gnl\|CDD\|179506
NZ_CP010377.1\|WP_033801270.1\|2096690_2097059_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010377.1\|WP_000207512.1\|2099394_2100384_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010377.1\|WP_162182415.1\|2094616_2096197_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271184
NZ_CP010377.1\|WP_001091024.1\|2097489_2098005_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010377.1\|WP_032673721.1\|2088846_2089731_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176163
NZ_CP010377.1\|WP_039273709.1\|2104850_2105411_-\|spermidine-N1-acetyltransferase	unknown	unknown	gnl\|CDD\|237916
NZ_CP010377.1\|WP_050806411.1\|2087604_2088732_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223999
NZ_CP010377.1\|WP_006808859.1\|2103077_2103929_-\|benzoate-transporter	unknown	unknown	gnl\|CDD\|368082
NZ_CP010377.1\|WP_000199921.1\|2097994_2098495_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010377.1\|WP_006808868.1\|2089817_2090495_+\|type-A-chloramphenicol-O-acetyltransferase	unknown	unknown	gnl\|CDD\|172295
NZ_CP010377.1\|WP_080320285.1\|2101069_2102539_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274006
NZ_CP010377.1\|WP_162182414.1\|2093524_2094691_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274006
NZ_CP010377.1\|WP_039273692.1\|2092040_2092895_-\|dimethyl-sulfoxide-reductase-anchor-subunit	unknown	unknown	gnl\|CDD\|113736
NZ_CP010377.1\|WP_006808871.1\|2086361_2087546_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP010377.1\|WP_006808860.1\|2102669_2102975_-\|DUF1161-domain-containing-protein	unknown	unknown	gnl\|CDD\|369019
NZ_CP010377.1\|WP_162182416.1\|2098815_2099310_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010377.1\|WP_006808867.1\|2090533_2090848_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP010377.1\|WP_006808866.1\|2090960_2091272_-\|YebG-family-protein	gnl\|CDD\|377779	pfam07130, YebG, YebG protein. This family consists of several bacterial YebG proteins of around 75 residues in length. The exact function of this protein is unknown but it is thought to be involved in the SOS response. The induction of the yebG gene occurs as cell enter into the stationary growth phase and is dependent on is dependent on cyclic AMP and H-NS.	3.9424e-34
NZ_CP010377.1\|WP_006808865.1\|2091381_2091996_-\|Tat-proofreading-chaperone-DmsD	gnl\|CDD\|236938	PRK11621, PRK11621, Tat proofreading chaperone DmsD.	1.73558e-118
NZ_CP010377.1\|WP_039273709.1\|2104850_2105411_-\|spermidine-N1-acetyltransferase	gnl\|CDD\|237916	PRK15130, PRK15130, spermidine N1-acetyltransferase; Provisional.	1.03166e-136
NZ_CP010377.1\|WP_162182415.1\|2094616_2096197_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271184	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain containing six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.06672e-44
NZ_CP010377.1\|WP_032673721.1\|2088846_2089731_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176163	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 5. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.82084e-93
NZ_CP010377.1\|WP_050806411.1\|2087604_2088732_-\|alpha/beta-hydrolase	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	5.6842e-39
NZ_CP010377.1\|WP_006808859.1\|2103077_2103929_-\|benzoate-transporter	gnl\|CDD\|368082	pfam04724, Glyco_transf_17, Glycosyltransferase family 17. This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (EC:2.4.1.144). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumor progression.	1.40632e-28
NZ_CP010377.1\|WP_006808868.1\|2089817_2090495_+\|type-A-chloramphenicol-O-acetyltransferase	gnl\|CDD\|172295	PRK13757, PRK13757, type A chloramphenicol O-acetyltransferase.	5.95775e-132
NZ_CP010377.1\|WP_006808858.1\|2104122_2104833_+\|YnfC-family-lipoprotein	gnl\|CDD\|179506	PRK02939, PRK02939, YnfC family lipoprotein.	2.438e-148
NZ_CP010377.1\|WP_162182414.1\|2093524_2094691_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|274006	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.	0
NZ_CP010377.1\|WP_039273692.1\|2092040_2092895_-\|dimethyl-sulfoxide-reductase-anchor-subunit	gnl\|CDD\|113736	pfam04976, DmsC, DMSO reductase anchor subunit (DmsC). The terminal electron transfer enzyme Me2SO reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC).	4.07053e-94
NZ_CP010377.1\|WP_006808871.1\|2086361_2087546_-\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.74663e-100
NZ_CP010377.1\|WP_006808860.1\|2102669_2102975_-\|DUF1161-domain-containing-protein	gnl\|CDD\|369019	pfam06649, DUF1161, Protein of unknown function (DUF1161). This family consists of several short, hypothetical bacterial proteins of unknown function.	3.6197e-26
NZ_CP010377.1\|WP_080320285.1\|2101069_2102539_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|274006	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.	0

>NZ_CP010377.1|WP_162182415.1|2094616_2096197_+|tyrosine-type-recombinase/integrase
MTDINHDNTVYPSSSFSGSPYLYQQVYTSSPDTRLTQINLLSVAKPQLVRRANGRYTIRFRLKGQTTPFLSVSTRSTDRRVATMRQRELAATAKAFMLDRPEVSLQELTEHLRSMAEQFLTDASDDYWNGLEVATLVDEKSNLKELAATQALSLDQQKGIRLALEVLTAAQQRVDTGDTSGRIKLIDDNNLTDDSTIGDSTSILNNEQGDRPAVFTQERQSSVVFSSLVSSLLAEKVQTLKTSSYKDLSSSLNTVSRFLPEDMDLMSRSGWLAVRDSMLASEVRPSTINKLLTKAKMCLDYGLMNGQLEGRNPIERMKLTKDIDSKRRAFTDEELERLLVRVESEYQFTRHTAHTTSEARRWASLVSVVTGARSAEVCHLTKRDIVTLDNGLVCIDINEDGDGKSVKNKHSVRLVPLTDGAYGFDLTSFLSWVDMQPDEGPLFGMTPSAYSSWFNSRVLTEALGDSQDVSLHSLRHWLATRMKERGVNLVDAQGILGHSSQSITYDLYGKGHAVGRLADVLKTALL
>NZ_CP010377.1|WP_162182414.1|2093524_2094691_-|molybdopterin-dependent-oxidoreductase
MLIQIGRPRERTGWIYSVIMINVSHIRTLSSIESTTSSPSIRLAMESIWNYAGNTIINQHSDINKTHDILQDESKCETIVVIDNFMTSSAKYADIVLPDLMTVEQEDIIPNDYAGNMGYLIFLQPVTAPKFERKPIYWIMSEVAKRLGPDIHQKFTEGRTQEQWLRYLYAKMVAKDPLLPSYDALKKMGIYKRKDPNGHFVAYKKFRDDPDANPLKTPSGKIEIYSSKLADIAATWELQKDETITPLPVYTSTFEGWDAPERSKFPLQLFGFHFKARIHSSYGNVDVLQAACRQEVWLNPVDAEKRGIKNGDMVRVFNDRGEVRIAAKVTPRIMPGVSAMGQGAWHDANMNGDRVDHGSCINTLTTHRPSPLAKGNPQHTNLVQIEKA
>NZ_CP010377.1|WP_039273692.1|2092040_2092895_-|dimethyl-sulfoxide-reductase-anchor-subunit
MGSGWHEWPLVIFTVFGQCVAGALIVMGFVWLKENDDKARMRIVRSLFLLWVVMGIGFMASVLHLGSPLRAFNSLNRVGASALSNEIAAGSIFFAAGGFWWLVSVIGKMPPALGKIWLVVSQILGIVFVWAMTRVYQIETVPTWYTGYTTLSFFLTMVLAGPLLAALLLHVANVTYKASLAASASVLALIVCVAVVVLQSTTLGTIQSSIQQANALLPDYGSLQVWRIALLAAGLGCWICPLIRRQAPKTLGLFAGVVLVVLAELIGRGLFYGLHMTAGLAIAG
>NZ_CP010377.1|WP_006808865.1|2091381_2091996_-|Tat-proofreading-chaperone-DmsD
MNDVSHRESFAFSARVLGALFYFAPDSEQTAPLVSALTAGDWVQDWPLAEESLLPVADMFKTPSDEALKDAWQRLFIGPYALPAPPWGSVWLDRESVLFGESTLALRQWMRENHIAFEMQQNEPEDHFGTLLMLAAWLAENGRETERDQLLAWHLLPWSTRFLTVFVENAAHPFYKALGKLARLTLADWQSTLLIPIAEKTLYR
>NZ_CP010377.1|WP_006808866.1|2090960_2091272_-|YebG-family-protein
MAVETKFVVVRKGEEKMTFASKKEADAHDKLLDMAEAFTDWLLQSGMQMDETQAENLGLYLAEQKESVQHILRTSKLPEQNAATDKTVSEADGSKKIRAVKAA
>NZ_CP010377.1|WP_006808867.1|2090533_2090848_+|hypothetical-protein
MEPNFTPEQIEMINRVVFEQIEMMHEKVAEIIAETETAAHQRLKDNGITMTEFCPANQNFLMMSLVQDLIDKVHGGDMALAKTMLTMEAKRLNISVNVEADKSR
>NZ_CP010377.1|WP_006808868.1|2089817_2090495_+|type-A-chloramphenicol-O-acetyltransferase
MTKITPEYTVVDLSRWARKEHFEVFQGFAQSTFNQTVQLDITVLLKHIKEVGWKFYPAIISLISHVVNRHPEFRMAMKDDELVIWNEVHPSYTLFHKETETFSSLWSHYDGNIDRFQHVYAEDVARYGNILAYWPKEESRENIFFISDIPWVSFSSFNVNVANMRNFFAPMFTFGKYYNQDGKVLLPFAVQVHHSVCDGFHVARLINELQALCDNLPHQSEALDV
>NZ_CP010377.1|WP_032673721.1|2088846_2089731_+|LysR-family-transcriptional-regulator
MAKRENYNELYLFIQVVREGSFTAAAQRLGLAQSGISRSVRELEERLGVRLLVRTTRKLSLTHAGEQLYQTAGSAFDALDTGLTRLAHYRQTPSGTVRINASQHAIEKCLLPKLAIFKQRYPDIRLELMNESRFVDIIAERFDAGVRLGPEVGQGMIAVRITPDMEMAVVAAPAHFRRYGFPQTPADLDAHPCIAYQFADGNHYQWELVQDGKRVTHRPEGQWAFSDSYMEADAARLGLGLAYVPVELVADDLERGALIRVLQRYSLRMDGLYLYYPHRNVSPALRAVIDTLKI
>NZ_CP010377.1|WP_050806411.1|2087604_2088732_-|alpha/beta-hydrolase
MKTFPQKLSVALLLCASLSGVTTMSYAETRNPDAPVSMVTTWDKTFAESDKVDHRKVTFENRYGITLVGDLYIPRNSGDQKLAAIAVSGPFGAVKEQSSGLYAQTLAEQGFVTLAFDPSYTGESGGQPRNVASPDINTEDFSAAVDFLGLQKEVDRNRIGILGICGWGGMALNAASMDTRVKAVATSVMYDMSRAMGHGVGDGKDRYSAADRRAVLQYLNAQRWKDAERGAFAHGGHDIHVDETGKVTATGRILPETLPADPHPVLKEFYDYYRMPRGFHARSVNSTGAWTATMPLSFMNMPLLSYAGEITIPTLIVTGENAHSRYFAEDAFNAVGSKQKELVIVPGANHVDLYDNVAGKIPFAQFEHFFKTSLN
>NZ_CP010377.1|WP_006808871.1|2086361_2087546_-|MFS-transporter
MSTLNQPSSRDAEPAHWGGIFAMTLCVFVLIASEFMPVSLLTPLARDLGVTEGMAGQGIAISGALAVLTSLFLSRLAGNMNRKHLLSGMTVLMALSGIIIAFAPNALMYMAGRALIGIAIGGFWSMSAATAIRLVPQHQVPRALAIFNGGNALATVVAAPLGSYLGSTIGWRGAFLCLVPVAIVAFIWQYFSLPDMAGNQGQSPRKSVFRLFHQPAVSVGLMACGLFFMGQFALFTYVRPFLETVTHVSPSGLSLILLTIGIAGFIGTLIVARVLNAAFYLTLMAIPLLMAVIAGVLILTGNSLWIVALLSGFWGMLATAAPTGWWTWLARTLPEDAEAGGGLMVAVIQLAIALGSTAGGVVFDTFGWQSTFALSGILLLSAMALTFTASRIPK
>NZ_CP010377.1|WP_033801270.1|2096690_2097059_+|hypothetical-protein
MARPIATHDNTFTKAYLQQHCGDLLSFDGQGDLSGWLDDVLTGAGRLDESMASNTKPVSPYLILTQLLTHDTLTVSAVQESLSRKRVALGEPMVSTRYARYVYATVVSASKSVQYHASKAGS
>NZ_CP010377.1|WP_001091024.1|2097489_2098005_+|hypothetical-protein
MNTELPVTNRQFLIILLTNAESSVDCCRYNLDLLKLSRWYAQAEDWDYEKIREMYAEPIQSYLQTHTEEELKRGLQDIFYFNNPYTCEGDSEEMDWIASRSDADLKHISNAMMQVESKWSRRLQVLTEDYENGTFDKLVPPDAERLQAKADQEQRFKSFAEALAGGASYDF
>NZ_CP010377.1|WP_000199921.1|2097994_2098495_+|hypothetical-protein
MTSDNKQEYTIHIFGQDITSQDGLFRLDEIRRVGIQIGKVEDNRSTEVARFMRTKAGRSLTNPENGFVKKINMGHLGTSWLADPVAAIEFGRWLDLGYGLAVTRAFVSMTSSATVQSAVASAEDIKPETKEFIQRHGTGLYIAGREVSQAEYSDYQAVTAGRCEWR
>NZ_CP010377.1|WP_162182416.1|2098815_2099310_+|hypothetical-protein
MMFNNNNNWKLSVTDINLYENTVSLDGQPYPLSLAIKTLIPGYLSGLPSTSREAMELLEALAEAGVTIGNFFSNDLMTAYGRRQLNKRAEAERIAKEQRLQTERMREENMTDAEWQKELQRREQVKAERRTYGESLRSATHSAGRSRAAIVADLESGGNWMDSL
>NZ_CP010377.1|WP_000207512.1|2099394_2100384_+|hypothetical-protein
MTTIKDAFQFGIEPVRITDTDNIQVNEGLPTNADPQVYALQLAKTVKAMLNGVLKDAQENIPFPVEVLPTRNSLPTPIIAHTLADRSVVVPVRGGKRPEVVTVPSGQEIVVEPIEQAILISEQTKLWDAKSSTGFTQGTLQQDAMNICENVVRTINARMVDVLESSKLLKTVELPVLTGSLTAKADAIMDALYENTESSFGSEVSDYGIIAHESQLKALSRLAAKQGFSGEDAIVDMLGTDIAYYNGEDKGVFMLAKRFTALSFGCFRHDGENITVVLSRDGDSQSHDLEILGKVFVVAEAATTIKMGTGSATAVLPVVKRLKFTKTEA
>NZ_CP010377.1|WP_080320285.1|2101069_2102539_-|molybdopterin-dependent-oxidoreductase
MSEVEHHGGISRRALVKSTAIGSLALAAGGITLPFGLKSAAAAVQTAIQPAEDKVVWGACSVNCGSRCALRLHVRDDEVYWVETDNTGEDIYGNHQVRACLRGRSIRRRINHPDRLNYPMKRVGKRGEGKFERITWEEALDTIAASLKSVVEKYGNEAVYINYSSGIVGGNITRSSPYASLVARLMNCYGGFLSHYGTYSTAQIACAMPYTYGSNDGNSTSDIENTKLVVMFGNNPAETRMSGGGITYYLEQARERSNARMIVIDPRYTDTAAGREDEWIPIRPGTDAALVAGIAWVLINENLVDQPFLDKYCVGYDEKTLPEGAPANGHYKAYILGQGDDKTAKTPEWASRITGIPADRIIKLAREIGSAKPAYICQGWGPQRQANGEQTSRAIAMLPILTGNVGINGGNSGARESTYTITIERMPLPENPVKTQISCFSWTDAIARGPEMTALRDGVRGKDKLDVPIKFIWNYKDLKRTLSRPEVLH
>NZ_CP010377.1|WP_006808860.1|2102669_2102975_-|DUF1161-domain-containing-protein
MKRLPWITALLLMSASPAILAAPDSCERVKSDIQQKIINNGVPESGFTLNIVPNDQADQPDAQVVGHCANDTFKILYTRTSSGNYPVSGAGTQENAPAEPQ
>NZ_CP010377.1|WP_006808859.1|2103077_2103929_-|benzoate-transporter
MIYDCFLYYDEDMLLDIRLHTLADVVDRFVIVEATHSFTGIPRELHFDITKFAKFKDKIIYVPFDAQPILSRADNQVDAWANEAALRNSIMNGLKDAADDDLILVSDVDEIFSPDTVRAINPRALCTTIHQNVFNYQFNLQVHNTDGTPRKCTLPRATSFYNLKHFFHGEPESFRNWKRARKDKNWSWFKWNWLKINNKIVKDGGWHFSWVMTPERISEKMSTISHTEYDLPEFNNPEHIMKVITNAEDIWGRDRKLVKQEVSKRTLPSYLVDNQHHYSQFIL
>NZ_CP010377.1|WP_006808858.1|2104122_2104833_+|YnfC-family-lipoprotein
MNKYAAITLLATVLVGCDNDTAPLSFTPEMASFSNEFDFDPLRGPVKDFTQTLFNDKGEVSKRVTGTMSTEGCFDTLELHDLEANTGVALVLDANYYVDAETQQQKVKLQGKCQLAELPSAGLTWDTDDNGFVVAAHSKEMEVKYQYDADGYPLGKTTVSGDQRLSVKSMPSKDLHKRMDYTAVSLLNDKPMGNVKQSCDYDRHNNPVSCELVITDDSVKPAVERKYTIKNSIEYY
>NZ_CP010377.1|WP_039273709.1|2104850_2105411_-|spermidine-N1-acetyltransferase
MSTLCDVKLRPLEREDLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVEREGEKAGLVELVEINHVHRRAEFQIIISPEHQGKGLASRAAKLAMDYGFNVLNLYKLYLIVDKENEKAIHIYRKLGFMVEGELIHEFFINGEYRNTIRMCIFQHQHLAGHKSSSASLLKPTAQ

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Crispr_ID: NZ_CP010377_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010377_5

3296546-3296646

Orphan

Consensus_repeat	Method
CCATCTCTACCCGCTGGGCCAGTTGCGCCGTCTTTACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010377_5

>merge|NZ_CP010377|5|3296546-3296646|CRISPRCasFinder
CCATCTCTACCCGCTGGGCCAGTTGCGCCGTCTTTACCATTGGTACCATTCAGGCCGTCTTTACCATCTTTACCCGCTGGGCCAGTTGCGCCGTCTTTACC

>NZ_CP010377|5|5|3296546-3296646|CRISPRCasFinder
CCATCTCTACCCGCTGGGCCAGTTGCGCCGTCTTTACC	ATTGGTACCATTCAGGCCGTCTTTA
CCATCTTTACCCGCTGGGCCAGTTGCGCCGTCTTTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010377.1\|WP_006811517.1\|3290524_3290875_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010377.1\|WP_032673997.1\|3302309_3302930_-\|YfgM-family-protein	unknown	unknown	gnl\|CDD\|225523
NZ_CP010377.1\|WP_003860601.1\|3286448_3287915_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NZ_CP010377.1\|WP_003860623.1\|3306737_3307904_-\|bifunctional-tRNA-(adenosine(37)-C2)-methyltransferase-TrmG/ribosomal-RNA-large-subunit-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|183031
NZ_CP010377.1\|WP_006811519.1\|3291143_3292178_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223745
NZ_CP010377.1\|WP_032673999.1\|3304299_3305418_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|234737
NZ_CP010377.1\|WP_006811531.1\|3309482_3310262_-\|dimethyl-sulfoxide-reductase-anchor-subunit	unknown	unknown	gnl\|CDD\|225839
NZ_CP010377.1\|WP_006811518.1\|3290871_3291093_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369254
NZ_CP010377.1\|WP_006811526.1\|3301120_3302299_-\|outer-membrane-protein-assembly-factor-BamB	unknown	unknown	gnl\|CDD\|236857
NZ_CP010377.1\|WP_006811515.1\|3288073_3289447_+\|exodeoxyribonuclease-VII-large-subunit	unknown	unknown	gnl\|CDD\|234714
NZ_CP010377.1\|WP_006811520.1\|3292236_3293781_-\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|225646
NZ_CP010377.1\|WP_003860625.1\|3308051_3308483_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_CP010377.1\|WP_006811522.1\|3294637_3295636_-\|porin	unknown	unknown	gnl\|CDD\|182275
NZ_CP010377.1\|WP_006811516.1\|3289505_3290525_+\|peptidase-M4-family-protein	unknown	unknown	gnl\|CDD\|341060
NZ_CP010377.1\|WP_006811521.1\|3294119_3294581_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010377.1\|WP_039274254.1\|3308607_3309483_-\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|274938
NZ_CP010377.1\|WP_032673998.1\|3302943_3304218_-\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234586
NZ_CP010377.1\|WP_006811525.1\|3299535_3301008_-\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|234628
NZ_CP010377.1\|WP_006811529.1\|3305444_3306446_-\|cytoskeleton-protein-RodZ	unknown	unknown	gnl\|CDD\|236776
NZ_CP010377.1\|WP_006811514.1\|3284804_3286382_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614

Protein	Function_ID	Function_description	E-value
NZ_CP010377.1\|WP_032673997.1\|3302309_3302930_-\|YfgM-family-protein	gnl\|CDD\|225523	COG2976, COG2976, Uncharacterized protein conserved in bacteria [Function unknown].	6.92326e-78
NZ_CP010377.1\|WP_003860601.1\|3286448_3287915_-\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NZ_CP010377.1\|WP_003860623.1\|3306737_3307904_-\|bifunctional-tRNA-(adenosine(37)-C2)-methyltransferase-TrmG/ribosomal-RNA-large-subunit-methyltransferase-RlmN	gnl\|CDD\|183031	PRK11194, PRK11194, ribosomal RNA large subunit methyltransferase N; Provisional.	0
NZ_CP010377.1\|WP_006811519.1\|3291143_3292178_-\|hypothetical-protein	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	5.22705e-08
NZ_CP010377.1\|WP_032673999.1\|3304299_3305418_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NZ_CP010377.1\|WP_006811531.1\|3309482_3310262_-\|dimethyl-sulfoxide-reductase-anchor-subunit	gnl\|CDD\|225839	COG3302, DmsC, DMSO reductase anchor subunit [General function prediction only].	4.41945e-60
NZ_CP010377.1\|WP_006811518.1\|3290871_3291093_-\|hypothetical-protein	gnl\|CDD\|369254	pfam07191, zinc-ribbons_6, zinc-ribbons. This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family have 8 highly conserved cysteine residues, which form two zinc ribbon domains.	2.77566e-27
NZ_CP010377.1\|WP_006811526.1\|3301120_3302299_-\|outer-membrane-protein-assembly-factor-BamB	gnl\|CDD\|236857	PRK11138, PRK11138, outer membrane biogenesis protein BamB; Provisional.	0
NZ_CP010377.1\|WP_006811515.1\|3288073_3289447_+\|exodeoxyribonuclease-VII-large-subunit	gnl\|CDD\|234714	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.	0
NZ_CP010377.1\|WP_006811520.1\|3292236_3293781_-\|peptide-MFS-transporter	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	3.38602e-117
NZ_CP010377.1\|WP_003860625.1\|3308051_3308483_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	1.4742e-84
NZ_CP010377.1\|WP_006811522.1\|3294637_3295636_-\|porin	gnl\|CDD\|182275	PRK10159, PRK10159, phosphoporin PhoE.	3.59229e-96
NZ_CP010377.1\|WP_006811516.1\|3289505_3290525_+\|peptidase-M4-family-protein	gnl\|CDD\|341060	cd09597, M4_TLP, Peptidase M4 family including thermolysin, protealysin, aureolysin, and neutral protease. This peptidase M4 family includes several endopeptidases such as thermolysin (EC 3.4.24.27), aureolysin (the extracellular metalloproteinase from Staphylococcus aureus), neutral protease from Bacillus cereus, protealysin, and bacillolysin (EC 3.4.24.28). Typically, the M4 peptidases consist of a presequence (signal sequence), a propeptide sequence, and a peptidase unit. The presequence is cleaved off during export while the propeptide has inhibitory and chaperone functions and facilitates folding. The propeptide remains attached until the peptidase is secreted and can be safely activated. All peptidases in this family bind a single catalytic zinc ion which is tetrahedrally co-ordinated by three amino acid ligands and a water molecule that forms the nucleophile on activation during catalysis. The active site is found between two sub-domains; the N-terminal domain contains the HEXXH zinc-binding motif while the helical C-terminal domain, which is unique for the family, carries the third zinc ligand. These peptidases are secreted eubacterial endopeptidases from Gram-positive or Gram-negative sources that degrade extracellular proteins and peptides for bacterial nutrition. They are selectively inhibited by Steptomyces metalloproteinase inhibitor (SMPI) as well as by phosphoramidon from Streptomyces tanashiensis. A large number of these enzymes are implicated as key factors in the pathogenesis of various diseases, including gastritis, peptic ulcer, gastric carcinoma, cholera and several types of bacterial infections, and are therefore important drug targets. Some enzymes of the family can function at extremes of temperatures, while some function in organic solvents, thus rendering them novel targets for biotechnological applications. Thermolysin is widely used as a nonspecific protease to obtain fragments for peptide sequencing. It has also been used in production of the artificial sweetener aspartame.	9.17853e-120
NZ_CP010377.1\|WP_039274254.1\|3308607_3309483_-\|4Fe-4S-binding-protein	gnl\|CDD\|274938	TIGR04041, glycine_radical_enzyme_activase_YjjW_family, glycine radical enzyme activase, YjjW family. Members of this family are radical SAM enzymes, designated YjjW in E. coli, that are paired with and appear to activate a glycyl radical enzyme of unknown function, designated YjjI. This activase and its target are found in Clostridial species as well as E. coli and cousins. Members of this family may be misannotated as pyruvate formate lyase activating enzyme. [Protein fate, Protein modification and repair].	6.69607e-08
NZ_CP010377.1\|WP_032673998.1\|3302943_3304218_-\|histidine--tRNA-ligase	gnl\|CDD\|234586	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.	0
NZ_CP010377.1\|WP_006811525.1\|3299535_3301008_-\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0
NZ_CP010377.1\|WP_006811529.1\|3305444_3306446_-\|cytoskeleton-protein-RodZ	gnl\|CDD\|236776	PRK10856, PRK10856, cytoskeleton protein RodZ.	0
NZ_CP010377.1\|WP_006811514.1\|3284804_3286382_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0

>NZ_CP010377.1|WP_006811522.1|3294637_3295636_-|porin
MKKTVVALAVLALGITSAYAAEIYNKDGNKLDLYGKVKAAHSWSDGEDGDGTYARLGFRGETQINDKLTGYGQFEGQFDAAQAEGAQDGVSTRLAFAGLDFDHNLSFDYGRNYGVAYDVGAYTDVLSEFGGDSYEGTNSFLTGRASGVATLRTGNAFGLADGVQFAAQYQGQDDTNSNPAKQHGTGYGFSLGYDLANTGVSAIAAYSTSAITADQKRSGWDGKNAEFWGTGLKYDANRVYVATIYGESHNLLQDADEAKHFEAIAAYVFDVGLRPNVAYVHARDNANRDIVEYVALGSDYYFNKNLVADVGYKIDLADGGDNTLVAGLTYQF
>NZ_CP010377.1|WP_006811521.1|3294119_3294581_-|hypothetical-protein
MKHYIIAALTASTLIAFTAGPAYAISATYRTQLERSGCNMTNESKGCDIHKTRAENEAAGFSDRGVTPTTRADIKKYDGDYVARHPNGQRVANIHIGAGTVRIAGKSVKATVSGDMLIINGSKTLTYVIYPNKGSFWEDTDSGNRGPIERVYF
>NZ_CP010377.1|WP_006811520.1|3292236_3293781_-|peptide-MFS-transporter
MQSSVNQKESRTFFGHPYPLGSLFFTEMWERFSFYGIRPLLILFMAATVYDGGMGLARENASAIVGIFAGTMYLAALPGGWLADNWLGQQRAVWYGSILIALGHLSIALSAIMGDNLFFIGLMFIVLGSGLFKTCISVMVGTLYKKGDARRDGGFSLFYMGINMGSFIAPLISGWLIKTHGWHWGFGIGGIGMLVALIIFRVFAVPAMKRYDSEVGLDSTWNSPVVKRNGVGAWLLALAVGVAIIVTLIAQGVIVINPVAVASVLVYVIAASVALYFIYLFIFAGLNRKERARLLVCFILLVSAAFFWSAFEQKPTSFNLFANDYTNRMIGDFEIPAVWFQSINALFIILLAPVFSWAWPKLASKNIRPSSITKFVIGILCAAAGFGLMMLAAQNVLSNGGAGVSPFWLVGSILMLTLGELCLSPIGLATMTLLAPERMRGQMMGLWFCASALGNLAAGLIGGHVKADQLDMLPDLFARCSIALLICAAVLIVLIVPVRRMLENAQTKPAANAS
>NZ_CP010377.1|WP_006811519.1|3291143_3292178_-|hypothetical-protein
MQLGFVGLGAVVETAYLPALRNLFKHPVRCFGFDVLPTKHPEGITRCASLAALLATPLDTLFITTASLQHLEVLEQAIASPVPRIVIEKPIVATLPQIEKLNALLATPGVASRVLALDHWMARIETVKQSLVGHYSDIARIEGFLQEPSGYNAAGEPIALNFATGEPDTRTLRHPDGVILDIGTHVLAMLRETVRYLGGHDDMALQVVTAKDRLGRDIARGDLTTAEGEAHLQGRISGVPVDIRLNKYAGPAGGQKGLRLYLRDGRIISHDRRGAEDVLELIEGKDIQRWHIPGTIYEHCLADHILGAKSLFERDPHEVSRTTRRRIEEVTLLLTLQQQLRGPH
>NZ_CP010377.1|WP_006811518.1|3290871_3291093_-|hypothetical-protein
MTITCPDCQAPLEPLNGVAHCENCNKDITLDALCPECHQPLQVLKACGAVDYFCQNGHGLISKKRVEFVRAEG
>NZ_CP010377.1|WP_006811517.1|3290524_3290875_+|hypothetical-protein
MQVPELTDDAVVELAREGGVAFIPKLSGQRTIALSSLNEAQRQRLVSILEQAFPRGQPPGQASSPGSGDQRYFRIQIIWTGQNQAHYADIIVLVPEQEAPESLVELWQKGEGCVCD
>NZ_CP010377.1|WP_006811516.1|3289505_3290525_+|peptidase-M4-family-protein
MPHLHSVIPPYILRRIIESGSEPQQRCARQTLTHVQTLMAHMPGKPAAPHVNKAGQLERDIYDAKQTQELPGTQVRYEGQPSNGDVAVDEAYDYLGITHDFFWKEYQRDSLDNKGLILTGTVHYGREYQNAFWNGQQMVFGDGDGEIFNRFTIAIDVVAHELSHGVTETEAGLIYFEQSGALNESLSDVFGSLVKQYHLKQTADRADWLIGEGLLAAGINGKGLRSMSEPGTAYDDPLLGKDPQPAHMKDFIKTREDNGGVHLNSGIPNRAFYLAATAIGGYAWEKAGYAWYDTVCDRNLAQDADFDAFAKLTIAHGEKRSGGDVGAAIKQAWEQVGVL
>NZ_CP010377.1|WP_006811515.1|3288073_3289447_+|exodeoxyribonuclease-VII-large-subunit
MLSSQSPSIYTVSRLNQTVRLLLEQEMGQVWISGEISNFTQPASGHWYFTLKDDTAQVRCAMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIVESMQPAGEGLLQQKYEQLKAMLSAEGLFDQQFKKPLPSPAHCVGIITSKTGAALHDILHVLKRRDPSLPVIIYPTAVQGDDAPWQIVRAIELANARQECDVLIVGRGGGSLEDLWSFNDERVARAIFASVIPVVSAVGHETDVTIADFVADLRAPTPSAAAEVVSRNQQELLRQIQNGQQRLEMAMDYFLANRTRRFTQLHHRLQQQHPQLRLARQQTVLERLRQRMNFAMDTQLKRAVSRQQRVTQRLNQQNPQPTIYRAQTRIQQLEYRLAENIRSRLSTTRERFGNAVTHLEAVSPLSTLARGYSVTTATDGKVLKQTKQVKAGDVLTTRLSDGWVESEVKEIKPVKKTRQRKSG
>NZ_CP010377.1|WP_003860601.1|3286448_3287915_-|IMP-dehydrogenase
MLRIAKEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPMLSAAMDTVTEARLAIALAQEGGIGFIHKNMSIERQAEEVRRVKKHESGIVSDPQTVLPTTTLHEVKALTERNGFAGYPVVTEDNELVGIITGRDVRFVTDLNQPVSVYMTPKERLVTVREGETRDVVLAKMHEKRVEKALVVDANFHLRGMITVKDFQKAERKPNACKDEHGRLRVGAAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIRETRAKYPDLQIIGGNVATGAGARALAEAGCSAVKVGIGPGSICTTRIVTGVGVPQITAVSDAVEALEGTGIPVIADGGIRFSGDIAKAIAAGAAAVMVGSMLAGTEESPGEIELYQGRSYKSYRGMGSLGAMSKGSSDRYFQTDNAADKLVPEGIEGRVAYKGRLKEIIHQQMGGLRSCMGLTGCGTIDLLRTKAEFVRISGAGIQESHVHDVTITKESPNYRLGS
>NZ_CP010377.1|WP_006811514.1|3284804_3286382_-|glutamine-hydrolyzing-GMP-synthase
MTENIHKHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIREFNPSGIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEGSNEREFGYAQVEVVTDSALVRGIEDSLTADGKPLLDVWMSHGDKVTAIPSDFVTVASTESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWTPAKIIDDAVERIRQQVGDDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAQQVMDMFGDHFGLNIVHVEGEQRFLDALKGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKSHHNVGGLPKEMKMGLVEPLRELFKDEVRKIGLELGLPYDMLYRHPFPGPGLGVRVLGEVKKEYCDLLRRADAIFIEELHKADLYNKVSQAFTVFLPVRSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEWE
>NZ_CP010377.1|WP_006811525.1|3299535_3301008_-|ribosome-biogenesis-GTPase-Der
MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADSAIAKHLRSREKPTFLVANKTDGIDADQAVADFWSLGLGDIYPIAASHGRGVTSLLETVLLPWVDEVNPPEEVDEDAEYWAQFEAGEEGEEEPEDDFNPQDLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRKRGKITDVVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSNDVREQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRQSTAMLTRIMNMAAEDHQPPLVRGRRVKLKYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGTPIRIQFKEGENPFANKRNTLTPNQMRKRKRLIKHIKKSK
>NZ_CP010377.1|WP_006811526.1|3301120_3302299_-|outer-membrane-protein-assembly-factor-BamB
MQLRKLLLPGLLSVTLLSGCSLFSGEEDVVKMSPLPTVENQFTPSTAWDTSVGDGIGDFYSNLHPAYADGVVYAADRKGTVKALNADDGKEVWSINLAEKDGWFSRKPALLSGGLTVAGGHVYVGSEKAQVYALNASDGSVAWQTTVAGESLSRPVVSDGMVLIHTSNGQLQALNEADGLVKWTVNLDMPALSLRGESAPATAFGAAIVGGDNGRVSAVLMQQGQMIWQQRISQATGSTEIDRLSDVDTTPVIVDGVVYALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYMVDQNDRLLALSTEGGVTLWTQSDLLHRLLTAPALYNGSLVVGDSEGYMHWIDPENGRFVAQQKVDSSGFLTEPVVADGKLLIQAKDGTLYAITR
>NZ_CP010377.1|WP_032673997.1|3302309_3302930_-|YfgM-family-protein
MEIYENEHDQVDAVKRFFVENGKALVVGVILGVGALVGWRYWNNHQADSARGSSLNYENTVSAIRADQPQTLTAAEKFAADNKNTYGALAALEVAQQYVDKNELDKAAAQLTQGLAAASDENLKAVINLRLARIQVQQKKADDALKTLDTIKGEGFAAIVADLRGEALLSKGDKAGARKAWQAGVDSKASPALSEMMQMKINNLSV
>NZ_CP010377.1|WP_032673998.1|3302943_3304218_-|histidine--tRNA-ligase
MAKNIQAIRGMNDYLPGETAIWQRIEGTLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFNQLGVEVFGLQGPDIDAELIMLTARWWRALGISEHVSLELNSIGSLEARANYRDALVAFLEQHKEKLDEDCKRRMYSNPLRVLDSKNPDVQALLNDAPALGDYLDEDSREHFTGLCKLLEAAGIAYTVNQRLVRGLDYYNRTVFEWVTTSLGSQGTVCAGGRYDGLVEQLGGRAAPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGAETQSAAMQLAERVRDALPDVKLMTNHGGGNFKKQFARADKWGASIALVLGESEVANGEVVVKDLRSGEQTTVTQDGVAAHLRTLLG
>NZ_CP010377.1|WP_032673999.1|3304299_3305418_-|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MHNQAPIQRRKSKRIYVGNVPIGDGAPIAVQSMTNTRTTDVEATVNQIKALERVGADIVRVSVPTMDAAEAFRLIKQQVSVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNEERIRMVVDCARDKNIPIRIGVNAGSLEKDLQEKYGEPTPQALLESAMRHVDHLDRLNFDQFKVSVKASDVFLAVESYRLLAKQIEQPLHLGITEAGGLRSGSVKSAIGLGLLLSEGIGDTLRVSLAADPVEEIKVGFDILKSLRIRARGINFIACPTCSRQEFDVIGTVNALEQRLEDIITPMDVSIIGCVVNGPGEALVSTLGVTGGNKKSGLYEDGVRKDRLDNSDMIDQLEARIRAKATMMDEAQRISVQQVEK
>NZ_CP010377.1|WP_006811529.1|3305444_3306446_-|cytoskeleton-protein-RodZ
MNTEATHDQNAALSTGVRLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYAKLVHIPEEELLPMMEKQAPVRAAKVAPMQSFSLGKRRKKRDGWLMSFTWLVLFVVVGLTGAWWWQNHKAQQEEITTMADQSSAELNQSGNNGAQSVPLSTEGAATSSEPQASAPATEPSTAPESTANTTPATQAQDQNAVVSPSQANVDAAPAATAPADNTAASLPTDPAGTAAPAVDPNALVMNFTADCWLEVTDATGKKLFSGLQRKDGTLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTVNAEQSAAQ
>NZ_CP010377.1|WP_003860623.1|3306737_3307904_-|bifunctional-tRNA-(adenosine(37)-C2)-methyltransferase-TrmG/ribosomal-RNA-large-subunit-methyltransferase-RlmN
MSELVNTSEVAIPAVPNKNGKINLLDLNRQQMREFFKEMGEKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAIRDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGESIAVKTV
>NZ_CP010377.1|WP_003860625.1|3308051_3308483_-|nucleoside-diphosphate-kinase
MAIERTFSIIKPNAVAKNVIGSIFARFESAGFKIVGTKMLHLTVEQARGFYAEHEGRPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPDNALAGTLRADYADSFTENGTHGSDSVESAAREIAFFFAEGEVCPRTR
>NZ_CP010377.1|WP_039274254.1|3308607_3309483_-|4Fe-4S-binding-protein
MGGLTFAPAMDVTHACVRRRFRHISCCACADACPVQAFSFTDSGVSVDESRCIECGDCLFVCPTEAITGIAPRKRFLRGDTLVGPFTEHAPGVNELLLWHAQYHVRFISIDAEQYPDWLLAIARLNLALRRRGEAAWAFKHIPVNEVNIARRALMHVPREVVRACSVVPGQRELRGAFSAFSEAEITLNADSCVLCGACWRSCTENSIRFENAELVLETGRCTGCGGCEAVCQHAAIKVTQTEGTAKRVVIPAYEAVCLTCHRHFWSFSSDEKQCPLCFHHQYGMRNPACC
>NZ_CP010377.1|WP_006811531.1|3309482_3310262_-|dimethyl-sulfoxide-reductase-anchor-subunit
MHELPLLIFTLFLQGSVGVTLWLAFGSTQRSALLPAAGAFVLASLGLLASALHMGYPLNALNALRHVSSSWLSREIIFASLYLAALGLATLLMFVKKPGWKPLLVVAGLVGLVDVFCMAQIYMHASVVTWQHVNTLVLFIGSVGIIGSACMAVGTRSQTTVRAAVVIITLLVLVRLVMQPVWLADITAMDNTVVTFPHAPLQMLEQLRTVHLLSWCVSVAGMLCFAAGGLKAARATMLLGSALLIVGELMLRFVFFSIG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010377_3	3.1\|1972158\|38\|NZ_CP010377\|CRISPRCasFinder	1972158-1972195	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	1	0.974
NZ_CP010377_5	5.1\|3296584\|25\|NZ_CP010377\|CRISPRCasFinder	3296584-3296608	25	NZ_CP028585	Escherichia coli strain WCHEC4533 plasmid p1_000533, complete sequence	90183-90207	4	0.84
NZ_CP010377_5	5.1\|3296584\|25\|NZ_CP010377\|CRISPRCasFinder	3296584-3296608	25	NZ_CP042620	Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-5, complete sequence	74756-74780	4	0.84
NZ_CP010377_5	5.1\|3296584\|25\|NZ_CP010377\|CRISPRCasFinder	3296584-3296608	25	NZ_CP034790	Escherichia coli strain ECCNB20-2 plasmid pTB423, complete sequence	80199-80223	4	0.84
NZ_CP010377_5	5.1\|3296584\|25\|NZ_CP010377\|CRISPRCasFinder	3296584-3296608	25	LT906557	Escherichia coli isolate E. coli RL465 genome assembly, plasmid: II	42817-42841	4	0.84
NZ_CP010377_5	5.1\|3296584\|25\|NZ_CP010377\|CRISPRCasFinder	3296584-3296608	25	NZ_CP032875	Escherichia coli strain WCHEC000837 plasmid p1_000837, complete sequence	24838-24862	4	0.84
NZ_CP010377_5	5.1\|3296584\|25\|NZ_CP010377\|CRISPRCasFinder	3296584-3296608	25	NZ_CP022228	Escherichia coli strain WCHEC96200 plasmid p1_000200, complete sequence	65803-65827	4	0.84
NZ_CP010377_1	1.1\|1581678\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581678-1581709	32	KY271395	Klebsiella phage 2b LV-2017, complete genome	29989-30020	6	0.812
NZ_CP010377_1	1.1\|1581678\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581678-1581709	32	KY271396	Klebsiella phage 2 LV-2017, complete genome	14696-14727	6	0.812
NZ_CP010377_1	1.1\|1581678\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581678-1581709	32	MK448231	Klebsiella phage ST101-KPC2phi6.1, complete genome	30282-30313	6	0.812
NZ_CP010377_1	1.1\|1581678\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581678-1581709	32	LN889992	Pseudomonas phage 15b genome assembly, chromosome: 1	115-146	7	0.781
NZ_CP010377_1	1.1\|1581678\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581678-1581709	32	LN889991	Bacteriophage 15G genome assembly, chromosome: 1	46148-46179	7	0.781
NZ_CP010377_1	1.2\|1581738\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581738-1581769	32	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	438549-438580	7	0.781
NZ_CP010377_1	1.2\|1581738\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581738-1581769	32	NZ_CP032342	Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence	319463-319494	7	0.781
NZ_CP010377_1	1.2\|1581738\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581738-1581769	32	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	332402-332433	7	0.781
NZ_CP010377_1	1.2\|1581738\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581738-1581769	32	NZ_CP033315	Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence	378710-378741	7	0.781
NZ_CP010377_1	1.2\|1581738\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581738-1581769	32	NZ_CP032349	Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence	393138-393169	7	0.781
NZ_CP010377_1	1.2\|1581738\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581738-1581769	32	NZ_CP019439	Thioclava nitratireducens strain 25B10_4 plasmid unnamed2, complete sequence	2320-2351	8	0.75
NZ_CP010377_1	1.2\|1581738\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581738-1581769	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	691442-691473	8	0.75
NZ_CP010377_1	1.2\|1581738\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581738-1581769	32	NZ_CP032325	Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence	272676-272707	8	0.75
NZ_CP010377_1	1.2\|1581738\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581738-1581769	32	NZ_CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	363699-363730	8	0.75
NZ_CP010377_1	1.2\|1581738\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581738-1581769	32	NC_013207	Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI02, complete sequence	49502-49533	8	0.75
NZ_CP010377_1	1.2\|1581738\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581738-1581769	32	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	467011-467042	8	0.75
NZ_CP010377_1	1.2\|1581738\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581738-1581769	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	297267-297298	9	0.719
NZ_CP010377_2	2.3\|1597130\|32\|NZ_CP010377\|CRISPRCasFinder	1597130-1597161	32	NC_004444	Pseudomonas resinovorans plasmid pCAR1, complete sequence	167260-167291	9	0.719
NZ_CP010377_2	2.3\|1597130\|32\|NZ_CP010377\|CRISPRCasFinder	1597130-1597161	32	NC_021506	Pseudomonas resinovorans NBRC 106553 plasmid pCAR1.3, complete sequence	167190-167221	9	0.719
NZ_CP010377_2	2.3\|1597130\|32\|NZ_CP010377\|CRISPRCasFinder	1597130-1597161	32	NC_011838	Pseudomonas putida plasmid pCAR1.2, complete sequence	168456-168487	9	0.719
NZ_CP010377_1	1.2\|1581738\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581738-1581769	32	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	46666-46697	10	0.688
NZ_CP010377_1	1.2\|1581738\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581738-1581769	32	NZ_CP053710	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence	79026-79057	10	0.688
NZ_CP010377_1	1.2\|1581738\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581738-1581769	32	MN310547	Mycobacterium phage Hutc2, complete genome	49098-49129	10	0.688
NZ_CP010377_1	1.2\|1581738\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581738-1581769	32	MF472893	Mycobacterium phage MissWhite, complete genome	47953-47984	10	0.688
NZ_CP010377_1	1.2\|1581738\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581738-1581769	32	MK524519	Mycobacterium phage Salz, complete genome	49020-49051	10	0.688
NZ_CP010377_1	1.2\|1581738\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581738-1581769	32	MF140410	Mycobacterium phage Et2Brutus, complete genome	50208-50239	10	0.688
NZ_CP010377_1	1.2\|1581738\|32\|NZ_CP010377\|PILER-CR,CRISPRCasFinder,CRT	1581738-1581769	32	KY471460	Mycobacterium phage Jabith, complete genome	50406-50437	10	0.688

1. spacer 3.1|1972158|38|NZ_CP010377|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 1, identity: 0.974

cagacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*********.****************************

2. spacer 5.1|3296584|25|NZ_CP010377|CRISPRCasFinder matches to NZ_CP028585 (Escherichia coli strain WCHEC4533 plasmid p1_000533, complete sequence) position: , mismatch: 4, identity: 0.84

attggtaccattcaggccgtcttta	CRISPR spacer
attggttccattcaggccgtctcag	Protospacer
****** ***************. .

3. spacer 5.1|3296584|25|NZ_CP010377|CRISPRCasFinder matches to NZ_CP042620 (Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-5, complete sequence) position: , mismatch: 4, identity: 0.84

attggtaccattcaggccgtcttta	CRISPR spacer
attggttccattcaggccgtctcag	Protospacer
****** ***************. .

4. spacer 5.1|3296584|25|NZ_CP010377|CRISPRCasFinder matches to NZ_CP034790 (Escherichia coli strain ECCNB20-2 plasmid pTB423, complete sequence) position: , mismatch: 4, identity: 0.84

attggtaccattcaggccgtcttta	CRISPR spacer
attggttccattcaggccgtctcag	Protospacer
****** ***************. .

5. spacer 5.1|3296584|25|NZ_CP010377|CRISPRCasFinder matches to LT906557 (Escherichia coli isolate E. coli RL465 genome assembly, plasmid: II) position: , mismatch: 4, identity: 0.84

attggtaccattcaggccgtcttta	CRISPR spacer
attggttccattcaggccgtctcag	Protospacer
****** ***************. .

6. spacer 5.1|3296584|25|NZ_CP010377|CRISPRCasFinder matches to NZ_CP032875 (Escherichia coli strain WCHEC000837 plasmid p1_000837, complete sequence) position: , mismatch: 4, identity: 0.84

attggtaccattcaggccgtcttta	CRISPR spacer
attggttccattcaggccgtctcag	Protospacer
****** ***************. .

7. spacer 5.1|3296584|25|NZ_CP010377|CRISPRCasFinder matches to NZ_CP022228 (Escherichia coli strain WCHEC96200 plasmid p1_000200, complete sequence) position: , mismatch: 4, identity: 0.84

attggtaccattcaggccgtcttta	CRISPR spacer
attggttccattcaggccgtctcag	Protospacer
****** ***************. .

8. spacer 1.1|1581678|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to KY271395 (Klebsiella phage 2b LV-2017, complete genome) position: , mismatch: 6, identity: 0.812

tgatggttaagaccgacattaacaacaagaag	CRISPR spacer
tgatggttaagaccgacatcaacaatcgcaaa	Protospacer
*******************.*****. . **.

9. spacer 1.1|1581678|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to KY271396 (Klebsiella phage 2 LV-2017, complete genome) position: , mismatch: 6, identity: 0.812

tgatggttaagaccgacattaacaacaagaag	CRISPR spacer
tgatggttaagaccgacatcaacaatcgcaaa	Protospacer
*******************.*****. . **.

10. spacer 1.1|1581678|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 6, identity: 0.812

tgatggttaagaccgacattaacaacaagaag	CRISPR spacer
tgatggttaagaccgacatcaacaatcgcaaa	Protospacer
*******************.*****. . **.

11. spacer 1.1|1581678|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to LN889992 (Pseudomonas phage 15b genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

tgatggttaagaccgacattaacaacaagaag	CRISPR spacer
tgatggttaagaccgacatcaacgaccgttac	Protospacer
*******************.***.** .  *

12. spacer 1.1|1581678|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to LN889991 (Bacteriophage 15G genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

tgatggttaagaccgacattaacaacaagaag	CRISPR spacer
tgatggttaagaccgacatcaacgaccgttac	Protospacer
*******************.***.** .  *

13. spacer 1.2|1581738|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 7, identity: 0.781

ggaggccgaggcggagtggctcgacaacctgc	CRISPR spacer
gcaggccgaggcggaggggctggaccatgtgt	Protospacer
* ************** **** *** *. **.

14. spacer 1.2|1581738|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032342 (Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.781

ggaggccgaggcggagtggctcgacaacctgc	CRISPR spacer
gcaggccgaggcggaggggctggaccgcgtgt	Protospacer
* ************** **** *** .* **.

15. spacer 1.2|1581738|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.781

ggaggccgaggcggagtggctcgacaacctgc	CRISPR spacer
gcaggccgaggcggaggggctggaccgcgtgt	Protospacer
* ************** **** *** .* **.

16. spacer 1.2|1581738|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.781

ggaggccgaggcggagtggctcgacaacctgc	CRISPR spacer
gcaggccgaggcggaggggctggaccgcgtgt	Protospacer
* ************** **** *** .* **.

17. spacer 1.2|1581738|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.781

ggaggccgaggcggagtggctcgacaacctgc	CRISPR spacer
gcaggccgaggcggaggggctggaccgcgtgt	Protospacer
* ************** **** *** .* **.

18. spacer 1.2|1581738|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019439 (Thioclava nitratireducens strain 25B10_4 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ggaggccgaggcggagtggct--cgacaacctgc	CRISPR spacer
ggcgaccgaggcggagtggctcgcgatggccg--	Protospacer
** *.****************  ***...**

19. spacer 1.2|1581738|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

ggaggccgaggcggagtggctcgacaacctgc	CRISPR spacer
tcaggccgaggcggaggggctggaccgcgtgt	Protospacer
  ************** **** *** .* **.

20. spacer 1.2|1581738|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032325 (Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.75

ggaggccgaggcggagtggctcgacaacctgc	CRISPR spacer
gcaggccgaggcggaggggctggaccgtgtgt	Protospacer
* ************** **** *** .. **.

21. spacer 1.2|1581738|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 8, identity: 0.75

ggaggccgaggcggagtggctcgacaacctgc	CRISPR spacer
acaggccgaggcggaggggctggaccgcgtgt	Protospacer
. ************** **** *** .* **.

22. spacer 1.2|1581738|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to NC_013207 (Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI02, complete sequence) position: , mismatch: 8, identity: 0.75

ggaggccgaggcggagtggctcga---caacctgc	CRISPR spacer
caaggccgaggcggcgtgggtcgacttcaaca---	Protospacer
 .************ **** ****   ****

23. spacer 1.2|1581738|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 8, identity: 0.75

ggaggccgaggcggagtggctcgacaacctgc	CRISPR spacer
ggaggccgaggcggagagcctcgccgcgatgg	Protospacer
**************** * **** *.   **

24. spacer 1.2|1581738|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

ggaggccgaggcggagtggctcgacaacctgc	CRISPR spacer
tcaggccgaggcggaggggctggaccgcgtct	Protospacer
  ************** **** *** .* * .

25. spacer 2.3|1597130|32|NZ_CP010377|CRISPRCasFinder matches to NC_004444 (Pseudomonas resinovorans plasmid pCAR1, complete sequence) position: , mismatch: 9, identity: 0.719

cgaccgtaagcggatggattcagggcgttaag	CRISPR spacer
tttcgcgaagcggatgaattcaggccgttacg	Protospacer
.  *   *********.******* ***** *

26. spacer 2.3|1597130|32|NZ_CP010377|CRISPRCasFinder matches to NC_021506 (Pseudomonas resinovorans NBRC 106553 plasmid pCAR1.3, complete sequence) position: , mismatch: 9, identity: 0.719

cgaccgtaagcggatggattcagggcgttaag	CRISPR spacer
tttcgcgaagcggatgaattcaggccgttacg	Protospacer
.  *   *********.******* ***** *

27. spacer 2.3|1597130|32|NZ_CP010377|CRISPRCasFinder matches to NC_011838 (Pseudomonas putida plasmid pCAR1.2, complete sequence) position: , mismatch: 9, identity: 0.719

cgaccgtaagcggatggattcagggcgttaag	CRISPR spacer
tttcgcgaagcggatgaattcaggccgttacg	Protospacer
.  *   *********.******* ***** *

28. spacer 1.2|1581738|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ggaggccgaggcggagtggctcgacaacctgc	CRISPR spacer
actcaatcaggcggagtggctcgccatcctgc	Protospacer
.   . . *************** ** *****

29. spacer 1.2|1581738|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053710 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

ggaggccgaggcggagtggctcgacaacctgc	CRISPR spacer
actcaatcaggcggagtggctcgccatcctgc	Protospacer
.   . . *************** ** *****

30. spacer 1.2|1581738|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to MN310547 (Mycobacterium phage Hutc2, complete genome) position: , mismatch: 10, identity: 0.688

ggaggccgaggcggagtggctcgacaacctgc	CRISPR spacer
gttcctgcaggcgcagaggctcgacaacctga	Protospacer
*    .  ***** ** **************

31. spacer 1.2|1581738|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to MF472893 (Mycobacterium phage MissWhite, complete genome) position: , mismatch: 10, identity: 0.688

ggaggccgaggcggagtggctcgacaacctgc	CRISPR spacer
ctacctgcaggcgcagaggctcgacaacctga	Protospacer
  *  .  ***** ** **************

32. spacer 1.2|1581738|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to MK524519 (Mycobacterium phage Salz, complete genome) position: , mismatch: 10, identity: 0.688

ggaggccgaggcggagtggctcgacaacctgc	CRISPR spacer
gttcctgcaggcgcagaggctcgacaacctga	Protospacer
*    .  ***** ** **************

33. spacer 1.2|1581738|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to MF140410 (Mycobacterium phage Et2Brutus, complete genome) position: , mismatch: 10, identity: 0.688

ggaggccgaggcggagtggctcgacaacctgc	CRISPR spacer
gttcctgcaggcgcagaggctcgacaacctga	Protospacer
*    .  ***** ** **************

34. spacer 1.2|1581738|32|NZ_CP010377|PILER-CR,CRISPRCasFinder,CRT matches to KY471460 (Mycobacterium phage Jabith, complete genome) position: , mismatch: 10, identity: 0.688

ggaggccgaggcggagtggctcgacaacctgc	CRISPR spacer
gttcctgcaggcgcagaggctcgacaacctga	Protospacer
*    .  ***** ** **************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

831014 : 849754

uncultured_Caudovirales_phage(64.29%)

head,tail,integrase,terminase,protease,portal,capsid

attL 830967:830985|attR 847348:847366

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
830967:830985	attL	NA	NA	NA	NA
WP_039273115.1\|831014_832241_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	7.3e-136	58.1
WP_039273118.1\|832332_833262_+	hypothetical protein	NA	NA	NA	NA
WP_039273123.1\|833400_833685_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_039273126.1\|833705_834416_+	hypothetical protein	NA	NA	NA	NA
WP_032661928.1\|834906_835098_-	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_032660562.1\|835237_835426_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_039273129.1\|835418_835613_+	hypothetical protein	NA	NA	NA	NA
WP_032672064.1\|835609_835822_+	hypothetical protein	NA	NA	NA	NA
WP_032672063.1\|835805_837575_+	DNA primase	Q7M2A8	Enterobacteria_phage	6.2e-128	51.6
WP_032672062.1\|837850_838111_+	hypothetical protein	NA	NA	NA	NA
WP_032672061.1\|838251_839313_+	hypothetical protein	U5P4L0	Shigella_phage	6.6e-69	40.1
WP_032660547.1\|839314_839797_+	hypothetical protein	NA	NA	NA	NA
WP_039273134.1\|840039_841206_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	7.7e-212	98.2
WP_039273137.1\|841257_841818_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.3e-100	98.4
WP_032672059.1\|841819_843055_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	7.4e-237	97.3
WP_039273140.1\|843067_843391_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.0e-49	88.8
WP_039273143.1\|843387_843681_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	7.7e-44	84.5
WP_039273146.1\|843680_844124_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.0e-75	88.4
WP_000113647.1\|844399_844756_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
WP_039273150.1\|844739_846401_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.2
WP_072223418.1\|846433_847027_+\|tail	tail assembly protein	F1C572	Cronobacter_phage	2.2e-53	53.9
WP_039273155.1\|847430_847967_+	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	1.3e-17	33.1
847348:847366	attR	NA	NA	NA	NA
WP_039273157.1\|848057_848720_-	carbonate dehydratase	NA	NA	NA	NA
WP_003856300.1\|848827_849754_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	5.3e-22	32.3

DBSCAN-SWA_2

1165738 : 1199996

Salmonella_phage(34.78%)

head,lysis,holin,integrase

attL 1165679:1165725|attR 1212791:1212837

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1165679:1165725	attL	NA	NA	NA	NA
WP_039273261.1\|1165738_1166902_-\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	7.0e-229	99.2
WP_071882737.1\|1166778_1167114_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_157844043.1\|1167220_1167391_-	hypothetical protein	NA	NA	NA	NA
WP_039273263.1\|1167387_1167738_-	hypothetical protein	I3PV00	Vibrio_phage	1.4e-23	54.8
WP_039273265.1\|1167740_1167956_-	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	3.8e-16	61.4
WP_039273267.1\|1167958_1168468_-	HNH endonuclease	A0A1W6DY33	Salmonella_phage	5.0e-38	48.8
WP_039273269.1\|1168559_1169171_-	hypothetical protein	NA	NA	NA	NA
WP_032737341.1\|1169167_1169386_-	hypothetical protein	NA	NA	NA	NA
WP_039273273.1\|1169382_1170042_-	DNA methyltransferase	G8C7S6	Escherichia_phage	3.9e-120	91.8
WP_006809793.1\|1170038_1170191_-	DUF1317 family protein	T1SAR0	Salmonella_phage	1.3e-05	44.2
WP_032667080.1\|1170190_1170520_-	hypothetical protein	NA	NA	NA	NA
WP_039273276.1\|1170540_1171089_-	3'-5' exoribonuclease	C6ZR35	Salmonella_phage	6.9e-94	85.2
WP_039273279.1\|1171097_1171673_-	single-stranded DNA-binding protein SSB1	C6ZR36	Salmonella_phage	2.5e-54	58.1
WP_039273280.1\|1171669_1172137_-	hypothetical protein	A0A2I7QWC6	Vibrio_phage	1.5e-44	58.7
WP_039273283.1\|1172137_1172863_-	recombinase	B8K1D9	Salmonella_phage	2.0e-85	64.9
WP_157844042.1\|1172859_1173018_-	hypothetical protein	I6R9C0	Salmonella_phage	3.4e-06	56.5
WP_039273286.1\|1173014_1173212_-	hypothetical protein	NA	NA	NA	NA
WP_039273288.1\|1173220_1174189_-	hypothetical protein	M9P0E1	Enterobacteria_phage	5.0e-71	87.3
WP_001752704.1\|1174265_1174472_-	cell division protein FtsZ	G8C7T2	Escherichia_phage	3.6e-32	100.0
WP_039273292.1\|1174628_1174838_-	hypothetical protein	NA	NA	NA	NA
WP_039273294.1\|1174987_1175233_-	hypothetical protein	NA	NA	NA	NA
WP_023306033.1\|1176238_1176436_+	hypothetical protein	G8C7T7	Escherichia_phage	3.2e-25	95.3
WP_032655965.1\|1176571_1177519_-	hypothetical protein	A9YX09	Burkholderia_phage	2.0e-61	42.3
WP_052254344.1\|1177657_1178299_-	helix-turn-helix domain-containing protein	K7PH71	Enterobacterial_phage	5.2e-93	76.8
WP_039273300.1\|1178402_1178618_+	helix-turn-helix transcriptional regulator	K7PMD5	Enterobacterial_phage	6.3e-27	80.3
WP_023300412.1\|1178648_1179191_+	regulatory protein CII	M9NZI6	Enterobacteria_phage	8.6e-81	87.2
WP_039273301.1\|1179375_1180311_+	replication protein	K7PGZ0	Enterobacteria_phage	3.8e-76	90.7
WP_039273302.1\|1180307_1180997_+	phage replication protein P	G8C7U6	Escherichia_phage	1.1e-125	94.8
WP_039273304.1\|1180998_1181343_+	helix-turn-helix transcriptional regulator	G8C7U7	Escherichia_phage	2.5e-54	93.8
WP_052254345.1\|1181339_1181924_+	hypothetical protein	A0A0F6N6A6	Escherichia_phage	2.6e-06	33.3
WP_039273306.1\|1183357_1183807_+	recombination protein NinB	I6R9D0	Salmonella_phage	1.2e-32	46.5
WP_039273307.1\|1183799_1183970_+	NinE family protein	G8C7V4	Escherichia_phage	3.8e-19	83.9
WP_039273308.1\|1184601_1185291_+	antiterminator	I6PDF8	Cronobacter_phage	4.2e-56	50.6
WP_080320280.1\|1185532_1186039_+	HNH endonuclease	A0A2D2W6Q0	Pectobacterium_phage	1.1e-16	35.3
WP_122008274.1\|1186601_1186907_+\|holin	holin	E7C9S8	Salmonella_phage	1.1e-43	86.1
WP_039273310.1\|1186893_1187334_+	lysozyme	A0A0M4R365	Salmonella_phage	1.1e-49	69.1
WP_039273311.1\|1187330_1187801_+\|lysis	lysis protein	Q8HA85	Salmonella_phage	1.4e-39	57.9
WP_039273315.1\|1187912_1188131_+	hypothetical protein	NA	NA	NA	NA
WP_157844041.1\|1188127_1188283_+	hypothetical protein	NA	NA	NA	NA
WP_039273319.1\|1188336_1188975_+	hypothetical protein	I6S676	Salmonella_phage	1.7e-112	91.5
WP_039273320.1\|1189006_1189486_+	DUF2280 domain-containing protein	F1C5D6	Cronobacter_phage	5.5e-63	74.2
WP_039273321.1\|1189472_1190951_+	phage DNA Packaging protein	G0ZND4	Cronobacter_phage	1.2e-257	87.6
WP_039273322.1\|1190966_1192316_+	DUF1073 domain-containing protein	A0A1V0E5Q5	Salmonella_phage	1.9e-238	91.3
WP_039273323.1\|1192275_1193202_+\|head	SPP1 gp7 family phage head morphogenesis protein	Q5G8Y3	Enterobacteria_phage	4.9e-161	90.9
WP_039273325.1\|1193204_1194470_+	hypothetical protein	Q5G8Y2	Enterobacteria_phage	3.6e-215	89.1
WP_039273326.1\|1194482_1194932_+	hypothetical protein	H6WRT3	Salmonella_phage	3.2e-65	85.2
WP_039273327.1\|1194949_1196026_+	hypothetical protein	Q5G8Y0	Enterobacteria_phage	9.1e-191	91.9
WP_039273328.1\|1196035_1196329_+	hypothetical protein	A0A1V0E5P8	Salmonella_phage	4.2e-42	89.7
WP_039273329.1\|1196391_1196793_+	hypothetical protein	G0ZNE1	Cronobacter_phage	3.0e-54	79.2
WP_039273331.1\|1196792_1196963_+	hypothetical protein	I6R0P9	Salmonella_phage	6.5e-11	48.2
WP_039273333.1\|1196959_1197277_+	hypothetical protein	G8GWD9	Rhodobacter_phage	7.3e-32	67.4
WP_039273335.1\|1197287_1197638_+	hypothetical protein	G0ZNE2	Cronobacter_phage	4.0e-39	67.8
WP_039273337.1\|1197640_1198081_+	hypothetical protein	A0A1V0E5P5	Salmonella_phage	6.0e-32	52.6
WP_032608745.1\|1198077_1198461_+	hypothetical protein	F1C5E4	Cronobacter_phage	2.3e-40	64.6
WP_039273340.1\|1198523_1199267_+	Ig domain-containing protein	F1C5E5	Cronobacter_phage	5.9e-72	86.7
WP_039268935.1\|1199324_1199996_+	hypothetical protein	G0ZNE7	Cronobacter_phage	7.0e-56	49.8
1212791:1212837	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1203400 : 1212613

Cronobacter_phage(55.56%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006808943.1\|1203400_1203898_+	hypothetical protein	F1C5F0	Cronobacter_phage	1.2e-89	91.5
WP_006808942.1\|1203897_1204368_+	hypothetical protein	F1C5F1	Cronobacter_phage	2.4e-79	93.6
WP_045284219.1\|1204330_1204747_+	C40 family peptidase	F1C5F2	Cronobacter_phage	3.4e-69	87.5
WP_039273352.1\|1204733_1207211_+\|tail	phage tail protein	F1C5A7	Cronobacter_phage	0.0e+00	92.6
WP_080320281.1\|1207269_1209384_+	hypothetical protein	C8XUT1	Shigella_phage	1.3e-286	74.9
WP_071882721.1\|1209409_1210837_-	hypothetical protein	F1C5A9	Cronobacter_phage	1.1e-34	28.0
WP_039273356.1\|1210833_1211751_-	glycosyltransferase family 2 protein	U5P087	Shigella_phage	3.2e-160	92.4
WP_039273359.1\|1211747_1212110_-	GtrA family protein	U5P0S6	Shigella_phage	3.4e-49	84.2
WP_006809734.1\|1212223_1212613_+	hypothetical protein	Q6UAV9	Klebsiella_phage	2.6e-47	68.2

DBSCAN-SWA_4

2830552 : 2839739

Burkholderia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039274063.1\|2830552_2832253_-	cellulose biosynthesis regulator YedQ	A0A127AWB9	Bacillus_phage	2.6e-14	31.7
WP_003859574.1\|2832337_2832520_-	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_032673930.1\|2832597_2833509_-	DUF808 domain-containing protein	NA	NA	NA	NA
WP_006811166.1\|2833687_2834602_+	drug/metabolite exporter YedA	NA	NA	NA	NA
WP_006811167.1\|2834573_2835065_-	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	7.9e-33	48.3
WP_006811168.1\|2835045_2836479_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.2e-102	55.9
WP_006811169.1\|2836522_2837224_-	phosphohydrolase	S4W232	Pandoravirus	9.6e-08	29.7
WP_102765986.1\|2837269_2838238_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	7.4e-184	98.8
WP_006811170.1\|2838575_2839739_+	porin	Q1MVN1	Enterobacteria_phage	2.4e-112	56.8

DBSCAN-SWA_5

2894224 : 2903080

Tupanvirus(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006811215.1\|2894224_2894836_+	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	A0A2H4UVM0	Bodo_saltans_virus	3.5e-14	29.3
WP_039274093.1\|2894874_2895855_-	LPS O-antigen chain length determinant protein WzzB	NA	NA	NA	NA
WP_032673945.1\|2896049_2897054_+	NAD-dependent epimerase	A0A2K9L0I7	Tupanvirus	3.3e-33	29.0
WP_032673946.1\|2897103_2898270_-	UDP-glucose 6-dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	3.1e-112	54.2
WP_006811219.1\|2898509_2899391_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.5e-103	62.4
WP_006811220.1\|2899391_2900477_-	dTDP-glucose 4,6-dehydratase	A0A291LAD7	Escherichia_phage	5.3e-98	52.5
WP_006811221.1\|2900566_2901973_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	5.2e-37	28.3
WP_006811222.1\|2902066_2903080_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	5.3e-92	50.2

DBSCAN-SWA_6

3720854 : 3778756

Salmonella_phage(57.14%)

transposase,protease,integrase,tRNA

attL 3716712:3716748|attR 3743838:3743874

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3716712:3716748	attL	NA	NA	NA	NA
WP_024191970.1\|3720854_3722312_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_032675471.1\|3722311_3724951_+\|integrase	integrase	NA	NA	NA	NA
WP_001567861.1\|3724950_3725628_+	hypothetical protein	NA	NA	NA	NA
WP_032160195.1\|3725662_3725959_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_102765986.1\|3726030_3726999_-\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	7.4e-184	98.8
WP_001567862.1\|3727757_3728099_-	hypothetical protein	NA	NA	NA	NA
WP_001567863.1\|3728098_3729469_-	hypothetical protein	NA	NA	NA	NA
WP_001567864.1\|3729465_3730554_-	hypothetical protein	NA	NA	NA	NA
WP_001567865.1\|3730686_3731235_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001567866.1\|3731273_3732380_-	hypothetical protein	NA	NA	NA	NA
WP_006811919.1\|3733391_3734789_+	galactose/proton symporter	NA	NA	NA	NA
WP_006811920.1\|3734848_3735346_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_006811921.1\|3735440_3736148_+	deoxyribonuclease I	NA	NA	NA	NA
WP_017382923.1\|3736199_3736931_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_006811923.1\|3736962_3737910_+	glutathione synthase	NA	NA	NA	NA
WP_006811924.1\|3737984_3738545_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_006811925.1\|3738544_3738961_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_006811926.1\|3738971_3739952_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_006811927.1\|3739969_3740671_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_039274395.1\|3740692_3741259_+	YggT family protein	NA	NA	NA	NA
WP_003860023.1\|3741255_3741552_+	YggU family protein	NA	NA	NA	NA
WP_006811929.1\|3741555_3742149_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_006811930.1\|3742141_3743290_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_006811931.1\|3743346_3743709_+	endonuclease domain-containing protein	NA	NA	NA	NA
WP_006811932.1\|3743882_3744599_-	DUF2884 domain-containing protein	NA	NA	NA	NA
3743838:3743874	attR	NA	NA	NA	NA
WP_003862421.1\|3744656_3744983_-	YggL family protein	NA	NA	NA	NA
WP_006811933.1\|3744982_3745702_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_006811934.1\|3745840_3746899_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_032674044.1\|3746925_3747198_+	oxidative damage protection protein	NA	NA	NA	NA
WP_003862427.1\|3747322_3748399_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_006811937.1\|3748685_3749942_+	nucleoside permease	NA	NA	NA	NA
WP_001303432.1\|3749992_3752128_-	ornithine decarboxylase	NA	NA	NA	NA
WP_006811938.1\|3752309_3753023_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_000654811.1\|3754442_3755411_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	1.7e-172	91.6
WP_032674047.1\|3757731_3759669_+	poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	NA	NA	NA	NA
WP_006811948.1\|3759661_3760993_+	poly-beta-1,6 N-acetyl-D-glucosamine synthase	B9UDL7	Salmonella_phage	8.5e-05	34.8
WP_006811949.1\|3760989_3761424_+	poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD	NA	NA	NA	NA
WP_006811950.1\|3761475_3763338_-	bifunctional glutathionylspermidine amidase/synthase	Q56ES0	Aeromonas_virus	2.6e-20	23.8
WP_006811951.1\|3763521_3764388_+	glutathione-dependent disulfide-bond oxidoreductase	NA	NA	NA	NA
WP_006811952.1\|3764511_3764844_+	hypothetical protein	NA	NA	NA	NA
WP_032674145.1\|3764959_3765706_+	L-fucose operon activator	NA	NA	NA	NA
WP_039274399.1\|3765711_3767259_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	3.3e-08	30.7
WP_032674048.1\|3767410_3768451_+	aldo/keto reductase	NA	NA	NA	NA
WP_006811956.1\|3768527_3769016_-	TIGR00645 family protein	NA	NA	NA	NA
WP_001084353.1\|3769059_3769563_-	hypothetical protein	NA	NA	NA	NA
WP_006811957.1\|3769665_3770070_+	hypothetical protein	NA	NA	NA	NA
WP_006811958.1\|3770071_3770497_+	hypothetical protein	NA	NA	NA	NA
WP_006811959.1\|3770577_3771003_-	TonB system transport protein ExbD	NA	NA	NA	NA
WP_003862482.1\|3771007_3771739_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA
WP_032674049.1\|3771990_3773178_+	cystathionine beta-lyase	NA	NA	NA	NA
WP_006811961.1\|3773320_3773980_+	DedA family protein	NA	NA	NA	NA
WP_006811962.1\|3774026_3774926_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_039274403.1\|3775121_3776285_+	alcohol dehydrogenase	NA	NA	NA	NA
WP_003862493.1\|3776390_3777218_+	2,5-didehydrogluconate reductase DkgA	A0A2H4PQR8	Staphylococcus_phage	1.9e-63	44.9
WP_102765986.1\|3777787_3778756_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	7.4e-184	98.8

DBSCAN-SWA_7

3786446 : 3831484

uncultured_Caudovirales_phage(33.33%)

transposase,integrase

attL 3800868:3800883|attR 3838749:3838764

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000227969.1\|3786446_3787523_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_016151369.1\|3789062_3789413_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	9.6e-41	65.5
WP_022649395.1\|3791576_3792545_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	6.9e-182	96.9
WP_007896426.1\|3792698_3794024_+	pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	6.5e-114	48.1
WP_016151347.1\|3795267_3795789_+	RNA polymerase sigma factor FecI	NA	NA	NA	NA
WP_023304425.1\|3795785_3796739_+	fec operon regulator FecR	NA	NA	NA	NA
WP_022652364.1\|3796825_3799150_+	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
WP_007898890.1\|3799194_3800097_+	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_004118243.1\|3800093_3801092_+	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
3800868:3800883	attL	NA	NA	NA	NA
WP_004118246.1\|3801088_3802045_+	Fe(3+) dicitrate ABC transporter permease subunit FecD	A0A2H4IY97	uncultured_Caudovirales_phage	5.3e-17	26.1
WP_004152282.1\|3802045_3802813_+	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	9.8e-14	25.2
WP_007898888.1\|3802911_3803205_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	4.7e-49	95.9
WP_007898884.1\|3803535_3803814_-	EAL domain-containing protein	NA	NA	NA	NA
WP_000427623.1\|3804075_3805080_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_007898882.1\|3805254_3805680_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	1.9e-51	71.4
WP_007898880.1\|3805692_3806982_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	4.4e-168	71.1
WP_022649397.1\|3807026_3807347_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	8.5e-20	44.8
WP_007898876.1\|3807432_3808131_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	7.7e-90	69.4
WP_004206574.1\|3808259_3808565_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004206572.1\|3808575_3809781_-	chromate efflux transporter	NA	NA	NA	NA
WP_016151342.1\|3809956_3810535_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	5.7e-22	35.5
WP_000427623.1\|3812699_3813704_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_032435706.1\|3814107_3815100_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_007851507.1\|3815469_3816552_+	DNA-binding transcriptional repressor LacI	C6ZCU4	Enterobacteria_phage	6.5e-189	98.1
WP_007894989.1\|3816673_3819748_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	96.8
WP_003846917.1\|3819799_3821053_+	lactose permease	NA	NA	NA	NA
WP_003846919.1\|3821109_3821280_+	hypothetical protein	NA	NA	NA	NA
WP_017384068.1\|3822134_3823268_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_077946840.1\|3823619_3824474_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	8.0e-81	56.2
WP_039274430.1\|3824470_3824755_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_017384060.1\|3824881_3825310_-	hypothetical protein	NA	NA	NA	NA
WP_000654811.1\|3827058_3828027_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	1.7e-172	91.6
WP_007897920.1\|3828483_3830250_-	hypothetical protein	NA	NA	NA	NA
WP_007897923.1\|3830236_3831484_-\|integrase	site-specific integrase	NA	NA	NA	NA
3838749:3838764	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3885192 : 3907908

uncultured_Caudovirales_phage(68.42%)

tail,head,integrase,terminase,tRNA,protease,portal,capsid

attL 3891372:3891393|attR 3907958:3907979

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006812008.1\|3885192_3886206_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.8e-109	58.9
WP_001144069.1\|3886442_3886658_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_006812009.1\|3886773_3888519_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.4e-76	39.0
WP_006812010.1\|3888684_3890529_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
WP_006812011.1\|3890623_3891130_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
3891372:3891393	attL	NA	NA	NA	NA
WP_039274451.1\|3891774_3892353_-	hypothetical protein	NA	NA	NA	NA
WP_039274453.1\|3892399_3892750_-	hypothetical protein	NA	NA	NA	NA
WP_039274456.1\|3892746_3893361_-\|tail	tail assembly protein	K7PM97	Enterobacterial_phage	6.8e-66	67.2
WP_039274460.1\|3893374_3895036_-\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	97.6
WP_039274462.1\|3895019_3895376_-\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	1.4e-58	94.1
WP_039274465.1\|3895649_3896093_-	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	1.3e-50	64.6
WP_039274468.1\|3896092_3896386_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	1.6e-41	81.4
WP_023304516.1\|3896378_3896717_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	5.1e-23	48.6
WP_039274471.1\|3896713_3897949_-\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	6.7e-238	98.0
WP_039274474.1\|3897950_3898511_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.0e-100	98.4
WP_039274477.1\|3898562_3899729_-\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	1.3e-214	99.2
WP_039274480.1\|3899987_3900761_+	hypothetical protein	NA	NA	NA	NA
WP_063927086.1\|3901392_3902757_-	AAA family ATPase	A0A2H4JFA4	uncultured_Caudovirales_phage	2.2e-258	96.7
WP_039274484.1\|3902753_3903122_-	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	1.8e-61	97.5
WP_006178882.1\|3903118_3903340_-	hypothetical protein	A0A2H4JBA1	uncultured_Caudovirales_phage	3.4e-12	57.1
WP_039274485.1\|3903332_3903518_-	hypothetical protein	A0A2H4JFH8	uncultured_Caudovirales_phage	4.7e-23	96.7
WP_023304529.1\|3903510_3903723_-	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	5.3e-10	50.9
WP_039274487.1\|3904624_3905404_-	ROK family transcriptional regulator	Q8HA02	Enterobacteria_phage	4.3e-41	52.0
WP_071882736.1\|3905412_3905622_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_039274849.1\|3905764_3906124_-	hypothetical protein	NA	NA	NA	NA
WP_039274488.1\|3906486_3907908_-\|integrase	integrase family protein	H7BV31	unidentified_phage	8.8e-08	27.2
3907958:3907979	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP010378

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010378_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010378_1

51302-51429

Orphan

Consensus_repeat	Method
CCGGCTCTTTCTGTATTGTGCAATACAG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP010378_1

>merge|NZ_CP010378|1|51302-51429|PILER-CR
CGCACTTTGTGTATTGTGCAATACATCTTTTTTCACCTGCTCAGACTTCGCGGGTTTTTCTGTATTGTGCAATACAGGTTTCTTCTGTTGCTCACTGGCTCCGGCTGATTCTGTATTGTGCAATACAG

>NZ_CP010378|1|1|51302-51429|PILER-CR
CGCACTTTGTGTATTGTGCAATACATCTTTTTTCACCT	GCTCAGACTTCGC
GGGTTTTTCTGTATTGTGCAATACAGGTTTCTTCTGTT	GCTCACTGGCTCCGGCTGATTCT
GTATTGTGCAATACAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010378.1\|WP_024561906.1\|57929_58292_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010378.1\|WP_032493181.1\|50471_51188_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010378.1\|WP_001642230.1\|52301_52520_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010378.1\|WP_024561907.1\|54056_57275_+\|conjugative-relaxase	unknown	unknown	gnl\|CDD\|378042
NZ_CP010378.1\|WP_099156418.1\|50100_50394_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010378.1\|WP_032277100.1\|49688_49892_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010378.1\|WP_032493179.1\|52519_54052_+\|type-IV-secretion-system-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|238547
NZ_CP010378.1\|WP_040115102.1\|47889_48387_+\|ROS/MUCR-transcriptional-regulator-domain-protein	unknown	unknown	gnl\|CDD\|368446
NZ_CP010378.1\|WP_032493182.1\|49447_49630_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010378.1\|WP_024562315.1\|47323_47593_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010378.1\|WP_000971716.1\|57271_57937_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010378.1\|WP_032493183.1\|49166_49373_+\|DUF905-family-protein	unknown	unknown	gnl\|CDD\|368702
NZ_CP010378.1\|WP_024562316.1\|46363_47155_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376266
NZ_CP010378.1\|WP_015060066.1\|47634_47835_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010378.1\|WP_024562318.1\|44659_45190_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP010378.1\|WP_024562316.1\|46363_47155_+\|hypothetical-protein	gnl\|CDD\|376266	pfam18847, LPD29, Large polyvalent protein associated domain 29. This is an alpha and beta fold domain with conserved polar residues that is found in polyvalent proteins of conjugative elements.	3.26148e-30
NZ_CP010378.1\|WP_032493183.1\|49166_49373_+\|DUF905-family-protein	gnl\|CDD\|368702	pfam06006, DUF905, Bacterial protein of unknown function (DUF905). This family consists of several short hypothetical Enterobacteria proteins of unknown function. Structural analysis of the surface features of the protein YvyC has revealed a single cluster of highly conserved residues on the surface. Additionally, these residues fall into two groups which lie within the two largest of the three cavities identified over the surface. The conclusion from this is that these two cavities with, Leu 58, Glu 75, Ile 82, and Glu 83 and Pro 86, conserved, are likely to be important for the molecular function and reflect the cavities found on the surface of the FlaG proteins in pfam03646.	0.00463241
NZ_CP010378.1\|WP_040115102.1\|47889_48387_+\|ROS/MUCR-transcriptional-regulator-domain-protein	gnl\|CDD\|368446	pfam05443, ROS_MUCR, ROS/MUCR transcriptional regulator protein. This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti. This gene encodes a 15.5-kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid and is necessary for succinoglycan production. Sinorhizobium meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of alfalfa nodules. MucR from Sinorhizobium meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan.	8.86773e-14
NZ_CP010378.1\|WP_032493179.1\|52519_54052_+\|type-IV-secretion-system-DNA-binding-domain-containing-protein	gnl\|CDD\|238547	cd01127, TrwB, Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.	1.07388e-156
NZ_CP010378.1\|WP_024561907.1\|54056_57275_+\|conjugative-relaxase	gnl\|CDD\|378042	pfam08751, TrwC, TrwC relaxase. Relaxases are DNA strand transferases which function during the conjugative cell to cell DNA transfer. TrwC binds to the origin of transfer (oriT) and melts the double helix.	3.167e-97

>NZ_CP010378.1|WP_032493181.1|50471_51188_-|hypothetical-protein
MKVAVINYSGSVGKTLVSTYLLAPRLKDAKFFAVETINQSASDLGIENVTSFKGDDFSRLIEDVVFEDAAIIDIGASNVEPFLMAMSRFDGGANEFDMYFIPVTPEDKAIKESMKTAHTLSKAGVDNKKIIFVPNRVNPGDDVENVFSPIFDFVKQTKVGRINKNSAIYNSEVYEYLAHHKISFETLTAEDAEEFKARAKASTDADERRKMARRYTYMKQAIPVKSNLDKTFSLLIGD
>NZ_CP010378.1|WP_099156418.1|50100_50394_-|hypothetical-protein
MKQVKVEQADMLQQLGELKSALELTADDSRAEIIGSLRDIQAAMKEENKARSDFLTRWQSLQHNNASTIVNRVVIMTAVCSIVGAAIGAALTLLILK
>NZ_CP010378.1|WP_032277100.1|49688_49892_-|hypothetical-protein
MGKQPYSPNEFFQLLLIRNWQQWEKEKAALGTCQHCGKSKAGGGCGGEFQKETYQCWLAQDANALNL
>NZ_CP010378.1|WP_032493182.1|49447_49630_+|hypothetical-protein
MTKITTPSQLKAELESQKTYLLEACLMAFNQLPNQRTKGAFPSTYALAAKIDYLLQQEKK
>NZ_CP010378.1|WP_032493183.1|49166_49373_+|DUF905-family-protein
MKQHIAAIIREYNTPTITVEVANTDRYDSEQIEIRQVVDGRLVWRAWDYETGFENDLHRELAYCHIPA
>NZ_CP010378.1|WP_040115102.1|47889_48387_+|ROS/MUCR-transcriptional-regulator-domain-protein
MADHDDAPEKIKCLECGKEFSFLAPHLSKAHQMNARQYRERWGIPLHRPLASAEHSRQCRENVLRRIRRGEIRPADQLALMAEGRKNAPERATSTRLHKVAAANVARVHQIWKHSPVVKVVPDTLRDEAVQRMTARKVTGEKVKDIAADLNLSVGCLYKWVASAK
>NZ_CP010378.1|WP_015060066.1|47634_47835_+|hypothetical-protein
MEKGKLAQQQGFDLELQILKSQRGYYIGTATSEGYPVSRESAEYFPDSSTAQQALTDNRWTQREDC
>NZ_CP010378.1|WP_024562315.1|47323_47593_+|hypothetical-protein
MNYLIIIPIALILAAAALALPWFMVRQGYREQVQLGGACTTVLGLAASTGVFSYADNMPLALLYGSASVVSFLYALDCFLPLYLSRKSH
>NZ_CP010378.1|WP_024562316.1|46363_47155_+|hypothetical-protein
MTTLTVGQCLTSFKNEYVVSAVNLADGKISYTILGLNAPTCAPLLETSLRFYQVIDKTLPLDELRARRQVVQSVTDQREARHQAKEDARQLANERASADPENAGLLTTATESNTTKLAAKNIRILLKKHFPGVKFSVRMRDYNALYVSWTDGPTKEAVEAITDKFEEGSVNSMEDIYEYNITGFHRVYGGVKYLFCSRDLTDALIAESIELLRKEYGETTIPADVTLEAYKSGALAGRGHDCFTWGLAAQIRINAGKVDKSSR
>NZ_CP010378.1|WP_024562318.1|44659_45190_+|hypothetical-protein
MAFDFKKEDAAKYGREVYRAFRSKGNHRWDTCVFVNESGAYSAVFRHSFRKKVIEDGKEIRRNVIDDEIVVAAPDAGSFTRAKFPQLADAKELKQSGFFARLRFLAEAAAYREAWPGHDGGVVLIWEGKAYGWKNCLRDAGCERPGAIAIDTDGHVFIAEGGNDYDGAKCWVAMPC
>NZ_CP010378.1|WP_001642230.1|52301_52520_+|hypothetical-protein
MSAFSSELKGLVKQLSQLKLPPPGQMMLHESLAIETVILLRSMATPANMKSAWGELERNGYKVWESKQERKE
>NZ_CP010378.1|WP_032493179.1|52519_54052_+|type-IV-secretion-system-DNA-binding-domain-containing-protein
MTEQERGLIFLCSLLGPIPFVWFITAKFVYGINSETAHYLVPYLLKNTFNLWPLWVAIIAGAVIGLCGFIGFIIYDKGRVYKGPRFKRVLRGTKLVRASSLAEKTKERDHKQLTVAGVPVPTEYETLHFSIGGATGTGKSTIIKEAIYSSLKRGTDKRIVLDPNGEYVETFYRPGDVILSPYDKRSPGWSMFNEIRDDFDYDLYAVSIIQESKERSAEEWYRYGRLIYREVSKKLLTLKRSPTMEEVMHWCTIVENEKLKEFVKGTPAEALFIKGAERATGSARFVLGDKLAPHLKMPAGDFSLRDWLEDDKPGTLFITWQEQMKKSLNPLISCWLDIMFSSLLGMGKRDQRTLFFIDELESLEYLPNLQDLLTKGRKSGASVWAGYQTYSQLIERYGINIAETLLGSMRSGIVMGSSRLGKETLEQMSRALGEIEGEVEHKQGNPFQAGIGNRPRIETRTVRAVTPTEISELKNLTGYVYFPGDLPVGKFKTKHVQYTRKNPVPGIIMR
>NZ_CP010378.1|WP_024561907.1|54056_57275_+|conjugative-relaxase
MLDITTITRIDIASVVGYYADAKDDYYSKDSSFTAWHGQGAEALGLSGEVSSQRFKELLVGEIDPFTQMKRSSGDATKERLGYDLTFSAPKGVSMQALIHGDKAIIAAHEKAVAAAVQEAEKLAQARTTHAGKTITQNTGNLVVASFRHETSRALDPELHTHAFVMNMTQRGDGQWRALKNDELMRAKMHLGDVYKQELALELTKAGYELRYNNKNNTFDMAHFTDEQIRGFSRRSAQIEEGLAAMGLTRETADAQTKSRVSMATRDKKTDDYSREDIHKEWVNRANELGIDFNDLSWAGKGKDGPQTSMNTVPNFTSPEVKADRAIQFALKSLSERDASFDQSRLLAVANKKAIGQASKQDIEAAYYRAVAKGAIIEGEARYTTTTDQRSKDAPPLPAMTKAEWQAQLTDKKGMNNDQAKALVAEGIKSGRLKKTSHRVTTVEGIRVEKAVLNIEARGRGKVIAALTSEQVTAQLVGKTLKAEQQKSVVDICTTTDRFVAAHGFAGTGKSYMTMSAKAVLESQGFNVTALAPYGTQKKSLEDEGMPARTVAAFVKAKDKKIDEKSVVFIDEAGVIPARQMKVLMETIEKAGARAVFLGDTSQTKAVEAGKPFEQLISAGMQTSYMKDIQRQKNDVLLEAVKLAAEGHISGSLARLSNISAEKDQDKRLEAVANRWLSFSPEQREGTLIISGTNESRVILNSQIREALQLQGKGVEVNFLERVDSTQAERRDSKYYQVGQIIIPEKDYKNGLQRGESYRVLDTGPGNLLTVAGSDGQKISFSPRTHKNLSVYTSVAAELAVGDKVMVTRNDKTLDVANGDRFTVTGTTEKGTFTLTNAKGREIELDQKQAAYLSYAYATTVHKAQGLTCDRVLFNIDTRSLTTSKDVFYVGISRARHEVEIFTDDKKRLLSSASRNSPKTTASEIDRFLGMEERYKDVNRSYGHSDGQQEKSYGHDAGHQTEEKENTMKNATEAAHDGPDTSGTENTSQDLRQREQEEVNAAIRYEQRQEATPEMEANPYHDYERYADEGPDYGDMQDYSTYEEYERARDVELPQHEHENHQHDHDKEGYGL
>NZ_CP010378.1|WP_000971716.1|57271_57937_+|hypothetical-protein
MMFWNRNKKEKAAAGNEKNRFDHLLSVAEKLPVKALPDLIRAIVRPVQSDFLLAVAEEGTDARPDMTPQEFFFEGLIQVQSYEKMKEGELDGADYPLSLASEMVLPWPWSLTRYIDNVSHIGTHKGRPWKQDKINHYVDLWLPWRIGFVRGGNHSITAGILAGEGTVIPDHVYDMSYLFELVRTDGNHWFVDGQKVEAVKSGRSAAVFEIGRLLTEGAKNG
>NZ_CP010378.1|WP_024561906.1|57929_58292_+|hypothetical-protein
MGEQITNAEWEKISPDNFETASLLRAVDAIDDLRGDFNDGEYSAPPQIRTDLLRLHEIAMAVINEGSRSRVSALFELASDLDEQISHLVNRLDEVQDTLSQLMELYPESLYYDDIEGDEE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP015078	Escherichia coli strain Ecol_448 plasmid pEC448_OXA163, complete sequence	32887-32909	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP034403	Escherichia coli strain CRE10 plasmid pCRE10.4, complete sequence	34726-34748	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_EF219134	Klebsiella pneumoniae isolate JIE137 plasmid pJIE137, complete sequence	51055-51077	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP022277	Citrobacter freundii strain 18-1 plasmid pD18-1, complete sequence	20150-20172	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP050010	Citrobacter sp. Y3 plasmid unnamed1, complete sequence	32455-32477	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP027617	Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed5, complete sequence	20308-20330	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP024879	Klebsiella pneumoniae strain NH25 plasmid pNH25.5, complete sequence	34833-34855	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP043856	Enterobacter hormaechei strain EB_P6_L3_02.19 plasmid pIMPIncN3_52kb, complete sequence	276-298	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP026184	Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-af73, complete sequence	39010-39032	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP011646	Klebsiella pneumoniae strain CAV1596 plasmid pKPC_CAV1596-97, complete sequence	33130-33152	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP040826	Enterobacter cloacae strain NH77 plasmid pEcloNH77, complete sequence	29824-29846	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP043516	Enterobacter kobei strain EB_P8_L5_01.19 plasmid pIMPIncN3_57kb, complete sequence	44764-44786	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	MN583554	Escherichia coli strain M17224 plasmid p17511_70, complete sequence	39767-39789	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP027125	Escherichia coli strain AR_0374 plasmid unnamed3	3381-3403	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP026279	Klebsiella oxytoca strain KONIH2 plasmid pKOR-b08d, complete sequence	481-503	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_KX784503	Citrobacter freundii strain 17285 plasmid p17285-IMP, complete sequence	10869-10891	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_KX784502	Klebsiella oxytoca strain 7121 plasmid p7121-IMP, complete sequence	10854-10876	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_KT148595	Klebsiella pneumoniae subsp. pneumoniae strain GN1006 plasmid pKPC-SMH, complete sequence	31495-31517	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_KT345947	Klebsiella pneumoniae strain 2013050801 plasmid p0801-IMP, complete sequence	10976-10998	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP010378	Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-59.134kb, complete sequence	51379-51401	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	MN967025	Klebsiella pneumoniae strain KP2611 plasmid pKP2611-N, complete sequence	11482-11504	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	MK368725	Escherichia coli strain JN24 plasmid pJN24NDM1, complete sequence	10989-11011	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NC_019163	Klebsiella pneumoniae plasmid pTR4, complete sequence	10987-11009	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP026274	Klebsiella oxytoca strain KONIH4 plasmid pKPC-4b66, complete sequence	139357-139379	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP029112	Escherichia coli strain AR436 plasmid unnamed3, complete sequence	52046-52068	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP026205	Escherichia coli strain ECONIH5 plasmid pKPC-e3ee, complete sequence	113-135	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_LT985223	Escherichia coli strain 711 plasmid RCS25_p, complete sequence	3799-3821	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP034398	Escherichia coli strain CRE1 plasmid pCRE1.4, complete sequence	8450-8472	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP042548	Klebsiella michiganensis strain C52 plasmid pC52_003, complete sequence	16661-16683	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NC_015872	Escherichia coli plasmid p271A, complete sequence	20552-20574	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP027137	Escherichia coli strain AR_0369 plasmid unnamed1, complete sequence	47670-47692	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP026232	Citrobacter freundii complex sp. CFNIH4 plasmid pKPC-c9fd, complete sequence	47772-47794	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP019907	Escherichia coli strain MDR_56 plasmid unnamed2, complete sequence	18732-18754	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_LT985250	Escherichia coli strain 170 plasmid RCS38_p, complete sequence	186437-186459	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NC_024954	Escherichia coli strain ECS01 plasmid pNDM-ECS01, complete sequence	10989-11011	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP010382	Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-53.129kb, complete sequence	52783-52805	0	1.0
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	NZ_CP035471	Escherichia coli strain U12A plasmid pU12A_D, complete sequence	8523-8545	2	0.913
NZ_CP010378_1	1.2\|51391\|23\|NZ_CP010378\|PILER-CR	51391-51413	23	KX863569	Uncultured bacterium plasmid pTRE-131 clone TRE-131, complete sequence	11643-11665	2	0.913

1. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP015078 (Escherichia coli strain Ecol_448 plasmid pEC448_OXA163, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

2. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP034403 (Escherichia coli strain CRE10 plasmid pCRE10.4, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

3. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_EF219134 (Klebsiella pneumoniae isolate JIE137 plasmid pJIE137, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

4. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP022277 (Citrobacter freundii strain 18-1 plasmid pD18-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

5. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP050010 (Citrobacter sp. Y3 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

6. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP027617 (Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

7. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP024879 (Klebsiella pneumoniae strain NH25 plasmid pNH25.5, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

8. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP043856 (Enterobacter hormaechei strain EB_P6_L3_02.19 plasmid pIMPIncN3_52kb, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

9. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP026184 (Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-af73, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

10. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP011646 (Klebsiella pneumoniae strain CAV1596 plasmid pKPC_CAV1596-97, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

11. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP040826 (Enterobacter cloacae strain NH77 plasmid pEcloNH77, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

12. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP043516 (Enterobacter kobei strain EB_P8_L5_01.19 plasmid pIMPIncN3_57kb, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

13. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to MN583554 (Escherichia coli strain M17224 plasmid p17511_70, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

14. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP027125 (Escherichia coli strain AR_0374 plasmid unnamed3) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

15. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP026279 (Klebsiella oxytoca strain KONIH2 plasmid pKOR-b08d, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

16. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_KX784503 (Citrobacter freundii strain 17285 plasmid p17285-IMP, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

17. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_KX784502 (Klebsiella oxytoca strain 7121 plasmid p7121-IMP, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

18. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_KT148595 (Klebsiella pneumoniae subsp. pneumoniae strain GN1006 plasmid pKPC-SMH, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

19. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_KT345947 (Klebsiella pneumoniae strain 2013050801 plasmid p0801-IMP, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

20. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP010378 (Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-59.134kb, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

21. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to MN967025 (Klebsiella pneumoniae strain KP2611 plasmid pKP2611-N, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

22. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to MK368725 (Escherichia coli strain JN24 plasmid pJN24NDM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

23. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NC_019163 (Klebsiella pneumoniae plasmid pTR4, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

24. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP026274 (Klebsiella oxytoca strain KONIH4 plasmid pKPC-4b66, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

25. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP029112 (Escherichia coli strain AR436 plasmid unnamed3, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

26. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP026205 (Escherichia coli strain ECONIH5 plasmid pKPC-e3ee, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

27. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_LT985223 (Escherichia coli strain 711 plasmid RCS25_p, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

28. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP034398 (Escherichia coli strain CRE1 plasmid pCRE1.4, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

29. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP042548 (Klebsiella michiganensis strain C52 plasmid pC52_003, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

30. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NC_015872 (Escherichia coli plasmid p271A, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

31. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP027137 (Escherichia coli strain AR_0369 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

32. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP026232 (Citrobacter freundii complex sp. CFNIH4 plasmid pKPC-c9fd, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

33. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP019907 (Escherichia coli strain MDR_56 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

34. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_LT985250 (Escherichia coli strain 170 plasmid RCS38_p, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

35. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NC_024954 (Escherichia coli strain ECS01 plasmid pNDM-ECS01, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

36. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP010382 (Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-53.129kb, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcttctgttgctcactggct	CRISPR spacer
gtttcttctgttgctcactggct	Protospacer
***********************

37. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to NZ_CP035471 (Escherichia coli strain U12A plasmid pU12A_D, complete sequence) position: , mismatch: 2, identity: 0.913

gtttcttctgttgctcactggct	CRISPR spacer
ttttcttttgttgctcactggct	Protospacer
 ******.***************

38. spacer 1.2|51391|23|NZ_CP010378|PILER-CR matches to KX863569 (Uncultured bacterium plasmid pTRE-131 clone TRE-131, complete sequence) position: , mismatch: 2, identity: 0.913

gtttcttctgttgctcactggct	CRISPR spacer
ttttcttttgttgctcactggct	Protospacer
 ******.***************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4384 : 43746

Salmonella_phage(25.0%)

transposase,integrase,protease

attL 9602:9615|attR 19025:19038

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001389365.1\|4384_5149_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_000376623.1\|5655_6156_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000259031.1\|6283_7123_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_012695489.1\|7613_8258_+	quinolone resistance pentapeptide repeat protein QnrB2	NA	NA	NA	NA
WP_003833285.1\|8299_8752_-	SgcJ/EcaC family oxidoreductase	NA	NA	NA	NA
9602:9615	attL	NA	NA	NA	NA
WP_001553819.1\|10550_13448_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	4.2e-182	37.8
WP_000509966.1\|13542_14148_+	recombinase family protein	A0A1S5Y2X8	uncultured_archaeal_virus	5.5e-20	35.3
WP_000259031.1\|15672_16512_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|16505_16853_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000470556.1\|16957_17248_-	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_010890144.1\|17384_17621_-	trimethoprim-resistant dihydrofolate reductase DfrB3	A0A0F6R7A8	Sinorhizobium_phage	4.8e-12	66.7
WP_000845048.1\|17828_18842_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001162012.1\|19147_19705_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
19025:19038	attR	NA	NA	NA	NA
WP_001138073.1\|19707_22680_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.1
WP_000427620.1\|22758_23763_+\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_000715148.1\|24271_24799_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	1.1e-24	38.7
WP_001076634.1\|24795_25797_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_000101920.1\|25847_26981_-	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_000758230.1\|26980_27868_-	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA
WP_001208352.1\|27878_28574_-	type IV secretion system protein	NA	NA	NA	NA
WP_014014948.1\|28792_29830_-	type IV secretion system protein	NA	NA	NA	NA
WP_000858958.1\|29846_30089_-	EexN family lipoprotein	NA	NA	NA	NA
WP_014014949.1\|30098_30800_-	conjugal transfer protein TraC	NA	NA	NA	NA
WP_040115085.1\|30815_33389_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
WP_000462629.1\|33389_33707_-	hypothetical protein	NA	NA	NA	NA
WP_015060075.1\|33746_34043_-	conjugal transfer protein TraM	NA	NA	NA	NA
WP_024562119.1\|34289_35072_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_000960955.1\|35171_35489_+	H-NS histone family protein	NA	NA	NA	NA
WP_024562120.1\|35492_35843_+	hypothetical protein	NA	NA	NA	NA
WP_040115112.1\|35953_36178_+	hypothetical protein	NA	NA	NA	NA
WP_099156415.1\|36202_36490_+	hypothetical protein	NA	NA	NA	NA
WP_024562121.1\|36774_36960_+	ribbon-helix-helix domain-containing protein	A0A0A7RUX5	Clostridium_phage	2.6e-05	57.8
WP_000275218.1\|36956_37565_-	recombinase family protein	NA	NA	NA	NA
WP_032493174.1\|37751_38084_-	hypothetical protein	NA	NA	NA	NA
WP_085954994.1\|38271_39398_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.4e-48	40.8
WP_064754415.1\|39667_40297_-	hypothetical protein	NA	NA	NA	NA
WP_040115094.1\|40483_41365_+	replication protein	NA	NA	NA	NA
WP_040115096.1\|41935_42274_+	ArdK family transcriptional regulator	NA	NA	NA	NA
WP_032493169.1\|42960_43746_-\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010380

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP010377

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP010378

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection