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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP010394 Klebsiella pneumoniae strain 34618 plasmid p34618-13.841kb, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP010396 Klebsiella pneumoniae strain 34618 plasmid p34618-71.572kb, complete sequence 0 crisprs RT 0 0 4 0
NZ_CP010392 Klebsiella pneumoniae strain 34618 chromosome, complete genome 2 crisprs csa3,cas3,DEDDh,RT,DinG,WYL 0 1 9 0
NZ_CP010395 Klebsiella pneumoniae strain 34618 plasmid p34618-43.380kb, complete sequence 0 crisprs NA 0 0 3 0
NZ_CP010393 Klebsiella pneumoniae strain 34618 plasmid p34618-207.543kb, complete sequence 0 crisprs csa3,RT,cas3 0 0 14 0

Results visualization

1. NZ_CP010393
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 41646 38 Escherichia_phage(37.5%) integrase,protease,transposase attL 4553:4567|attR 21894:21908
DBSCAN-SWA_2 45769 : 50076 5 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_3 53533 : 54247 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_4 58762 : 60840 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_5 65933 : 73190 5 uncultured_Caudovirales_phage(33.33%) NA NA
DBSCAN-SWA_6 76563 : 85067 5 Bacillus_phage(50.0%) transposase,holin NA
DBSCAN-SWA_7 90375 : 107588 13 Macacine_betaherpesvirus(30.0%) integrase,transposase attL 80125:80141|attR 111186:111202
DBSCAN-SWA_8 110725 : 115010 4 Thalassomonas_phage(33.33%) NA NA
DBSCAN-SWA_9 120430 : 124033 7 Klebsiella_phage(25.0%) NA NA
DBSCAN-SWA_10 158186 : 158912 1 Xanthomonas_phage(100.0%) NA NA
DBSCAN-SWA_11 164091 : 164571 1 Wolbachia_phage(100.0%) NA NA
DBSCAN-SWA_12 176592 : 184453 6 Herpes_simplex_virus(25.0%) NA NA
DBSCAN-SWA_13 197928 : 200617 2 Catovirus(50.0%) NA NA
DBSCAN-SWA_14 204439 : 207462 4 Stx2-converting_phage(66.67%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP010392
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010392_1 3982103-3982198 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010392_2 4466061-4466155 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP010392_1 1.1|3982133|36|NZ_CP010392|CRISPRCasFinder 3982133-3982168 36 MK448233 Klebsiella phage ST11-VIM1phi8.1, complete genome 8447-8482 0 1.0
NZ_CP010392_1 1.1|3982133|36|NZ_CP010392|CRISPRCasFinder 3982133-3982168 36 MK448235 Klebsiella phage ST512-KPC3phi13.1, complete genome 8447-8482 0 1.0
NZ_CP010392_1 1.1|3982133|36|NZ_CP010392|CRISPRCasFinder 3982133-3982168 36 MK448231 Klebsiella phage ST101-KPC2phi6.1, complete genome 11383-11418 0 1.0

1. spacer 1.1|3982133|36|NZ_CP010392|CRISPRCasFinder matches to MK448233 (Klebsiella phage ST11-VIM1phi8.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

2. spacer 1.1|3982133|36|NZ_CP010392|CRISPRCasFinder matches to MK448235 (Klebsiella phage ST512-KPC3phi13.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

3. spacer 1.1|3982133|36|NZ_CP010392|CRISPRCasFinder matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 443981 : 478305 34 uncultured_Caudovirales_phage(68.75%) head,protease,transposase,tail,tRNA,terminase,portal,integrase attL 461589:461606|attR 478650:478667
DBSCAN-SWA_2 1729771 : 1738555 6 Klebsiella_phage(16.67%) NA NA
DBSCAN-SWA_3 1970708 : 2027205 54 Staphylococcus_phage(16.67%) plate,transposase,protease NA
DBSCAN-SWA_4 2690870 : 2701757 9 Escherichia_phage(87.5%) NA NA
DBSCAN-SWA_5 2896222 : 3091844 213 Klebsiella_phage(22.52%) transposase,protease,holin,tail,plate,terminase,integrase attL 2921792:2921809|attR 3078336:3078353
DBSCAN-SWA_6 3457930 : 3467394 8 Brazilian_cedratvirus(16.67%) protease,tRNA NA
DBSCAN-SWA_7 3947948 : 3993223 65 Cronobacter_phage(25.0%) lysis,head,tRNA,holin NA
DBSCAN-SWA_8 4202778 : 4211546 10 Enterobacteria_phage(66.67%) integrase attL 4202630:4202643|attR 4206843:4206856
DBSCAN-SWA_9 4682664 : 4688489 8 Enterobacteria_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP010395
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 9330 7 Escherichia_phage(57.14%) transposase NA
DBSCAN-SWA_2 13930 : 14446 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_3 33077 : 37248 3 Moraxella_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_CP010396
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 34866 28 Escherichia_phage(29.41%) transposase,integrase attL 11237:11250|attR 38139:38152
DBSCAN-SWA_2 38707 : 40402 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_3 43629 : 58646 11 Escherichia_phage(33.33%) transposase NA
DBSCAN-SWA_4 67343 : 71366 4 Escherichia_phage(100.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage