CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009302	Coriobacteriaceae bacterium 68-1-3 chromosome, complete genome	2 crisprs	cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,DinG,WYL,csa3	0	4	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009302_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009302_1

89500-90610

TypeI

Consensus_repeat	Method
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	PILER-CR
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	CRISPRCasFinder
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	CRT

16 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP009302_1

>merge|NZ_CP009302|1|89500-90610|PILER-CR,CRISPRCasFinder,CRT
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAATTTTTTACATAAGTAGTACACGAAATCCGCATAATCGTCTCCCTCCTCACGGAGGGAGTGGGTTGAAATGGCCTCAACCCCCAGTATAGAAAATAAGGGTTGGTCTCCCTCCTCACGGAGGGAGTGGGTTGAAATTTATCGACCTTGGCGGAAAGGTTGGAGAGCGTGGTCTCCCTCCTCACGGAGGGAGTGGGTTGAAATTGGCGCTGCGCTTCCTCGTTTGCTGCGTTCGCGGGTCTCCCTCCTCACGGAGGGAGTGGGTTGAAATTAGAGCAGAGGGCCTTTTTGGCGTCGCTGGAGCCGTCTCCCTCCTCACGGAGGGAGTGGGTTGAAATTCCCTTCGATCGAGCCAGTTGTTGAACACTTGGGTCTCCCTCCTCACGGAGGGAGTGGGTTGAAATCGCTCGCCCCTCCGCGAAGCGTCGGCGACTCGTCGTCTCCCTCCTCACGGAGGGAGTGGGTTGAAATGAAACCGATTTCACGCGTCCAAAAATGCTCTAAAAGTCTCCCTCCTCACGGAGGGAGTGGGTTGAAATCCGCCGCCGCGAACCCGTCACGCGGCTCCATTAGGTCTCCCTCCTCACGGAGGGAGTGGGTTGAAATACCTCCTCTACCTCGTTGTTTACTCAATTGAGTAAGTCTCCCTCCTCACGGAGGGAGTGGGTTGAAATGCGCGTCGGCCTCCCTCCGCTGGGAGGAGCTGTCCGTCTCCCTCCTCACGGAGGGAGTGGGTTGAAATGTGCCCGACTTCGTCGTCATGAACACGCTCTTGCCGTCTCCCTCCTCACGGAGGGAGTGGGTTGAAATCCGCAGTCGGTGCATCGTCCCTTGGTGCGCTCGATGTCTCCCTCCTCACGGAGGGAGTGGGTTGAAATGGAGCGTGGTGCGAGTCCGAGGGCCTGCAGATCAGTCTCCCTCCTCACGGAGGGAGTGGGTTGAAATCTGACGGCGCTCATCGTCTACCAGGCGATCGACCTGTCTCCCTCCTCACGGAGGGAGTGGGTTGAAATATCTGGCCTTCGTATGAGCCTTACCTATCGCGCTACGTCTCCCTCTTCACGGAGGGGGAGTTCCGAAAT

>NZ_CP009302|1|1|89500-90541|PILER-CR
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	TTTTTACATAAGTAGTACACGAAATCCGCATAATC
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	GGCCTCAACCCCCAGTATAGAAAATAAGGGTTG
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	TTATCGACCTTGGCGGAAAGGTTGGAGAGCGTG
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	TGGCGCTGCGCTTCCTCGTTTGCTGCGTTCGCGG
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	TAGAGCAGAGGGCCTTTTTGGCGTCGCTGGAGCC
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	TCCCTTCGATCGAGCCAGTTGTTGAACACTTGG
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	CGCTCGCCCCTCCGCGAAGCGTCGGCGACTCGTC
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	GAAACCGATTTCACGCGTCCAAAAATGCTCTAAAA
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	CCGCCGCCGCGAACCCGTCACGCGGCTCCATTAG
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	ACCTCCTCTACCTCGTTGTTTACTCAATTGAGTAA
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	GCGCGTCGGCCTCCCTCCGCTGGGAGGAGCTGTCC
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	GTGCCCGACTTCGTCGTCATGAACACGCTCTTGCC
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	CCGCAGTCGGTGCATCGTCCCTTGGTGCGCTCGAT
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	GGAGCGTGGTGCGAGTCCGAGGGCCTGCAGATCA
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	CTGACGGCGCTCATCGTCTACCAGGCGATCGACCT
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT

>NZ_CP009302|1|1|89500-90610|CRISPRCasFinder
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	TTTTTACATAAGTAGTACACGAAATCCGCATAATC
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	GGCCTCAACCCCCAGTATAGAAAATAAGGGTTG
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	TTATCGACCTTGGCGGAAAGGTTGGAGAGCGTG
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	TGGCGCTGCGCTTCCTCGTTTGCTGCGTTCGCGG
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	TAGAGCAGAGGGCCTTTTTGGCGTCGCTGGAGCC
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	TCCCTTCGATCGAGCCAGTTGTTGAACACTTGG
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	CGCTCGCCCCTCCGCGAAGCGTCGGCGACTCGTC
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	GAAACCGATTTCACGCGTCCAAAAATGCTCTAAAA
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	CCGCCGCCGCGAACCCGTCACGCGGCTCCATTAG
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	ACCTCCTCTACCTCGTTGTTTACTCAATTGAGTAA
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	GCGCGTCGGCCTCCCTCCGCTGGGAGGAGCTGTCC
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	GTGCCCGACTTCGTCGTCATGAACACGCTCTTGCC
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	CCGCAGTCGGTGCATCGTCCCTTGGTGCGCTCGAT
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	GGAGCGTGGTGCGAGTCCGAGGGCCTGCAGATCA
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	CTGACGGCGCTCATCGTCTACCAGGCGATCGACCT
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	ATCTGGCCTTCGTATGAGCCTTACCTATCGCGCTAC
GTCTCCCTCTTCACGGAGGGGGAGTTCCGAAAT

>NZ_CP009302|1|1|89500-90610|CRT
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	TTTTTACATAAGTAGTACACGAAATCCGCATAATC
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	GGCCTCAACCCCCAGTATAGAAAATAAGGGTTG
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	TTATCGACCTTGGCGGAAAGGTTGGAGAGCGTG
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	TGGCGCTGCGCTTCCTCGTTTGCTGCGTTCGCGG
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	TAGAGCAGAGGGCCTTTTTGGCGTCGCTGGAGCC
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	TCCCTTCGATCGAGCCAGTTGTTGAACACTTGG
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	CGCTCGCCCCTCCGCGAAGCGTCGGCGACTCGTC
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	GAAACCGATTTCACGCGTCCAAAAATGCTCTAAAA
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	CCGCCGCCGCGAACCCGTCACGCGGCTCCATTAG
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	ACCTCCTCTACCTCGTTGTTTACTCAATTGAGTAA
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	GCGCGTCGGCCTCCCTCCGCTGGGAGGAGCTGTCC
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	GTGCCCGACTTCGTCGTCATGAACACGCTCTTGCC
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	CCGCAGTCGGTGCATCGTCCCTTGGTGCGCTCGAT
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	GGAGCGTGGTGCGAGTCCGAGGGCCTGCAGATCA
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	CTGACGGCGCTCATCGTCTACCAGGCGATCGACCT
GTCTCCCTCCTCACGGAGGGAGTGGGTTGAAAT	ATCTGGCCTTCGTATGAGCCTTACCTATCGCGCTAC
GTCTCCCTCTTCACGGAGGGGGAGTTCCGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009302.1\|WP_039687910.1\|84584_86396_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP009302.1\|WP_039687907.1\|81376_83692_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP009302.1\|WP_039687901.1\|77975_78821_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
NZ_CP009302.1\|WP_039687937.1\|105853_107977_-\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293739
NZ_CP009302.1\|WP_039687908.1\|83922_84588_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP009302.1\|WP_144299242.1\|103689_105843_-\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293739
NZ_CP009302.1\|WP_039687903.1\|78817_80362_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|270330
NZ_CP009302.1\|WP_039687912.1\|86423_87332_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP009302.1\|WP_039687935.1\|102627_103524_+\|acetamidase/formamidase-family-protein	unknown	unknown	gnl\|CDD\|225279
NZ_CP009302.1\|WP_039687930.1\|97629_101340_-\|phosphoribosylformylglycinamidine-synthase	unknown	unknown	gnl\|CDD\|130916
NZ_CP009302.1\|WP_039687914.1\|87340_87997_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP009302.1\|WP_039687924.1\|91788_93921_+\|C69-family-dipeptidase	unknown	unknown	gnl\|CDD\|227034
NZ_CP009302.1\|WP_039687905.1\|80365_80980_-\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|227348
NZ_CP009302.1\|WP_039687928.1\|95660_97469_+\|flavocytochrome-c	unknown	unknown	gnl\|CDD\|273816
NZ_CP009302.1\|WP_052241461.1\|90963_91416_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|378935
NZ_CP009302.1\|WP_039687932.1\|101528_102563_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|224919
NZ_CP009302.1\|WP_039687922.1\|90738_90924_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NZ_CP009302.1\|WP_039687926.1\|94009_95422_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP009302.1\|WP_039687920.1\|89036_89327_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP009302.1\|WP_039687917.1\|87993_89025_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360

Protein	Function_ID	Function_description	E-value
NZ_CP009302.1\|WP_039687910.1\|84584_86396_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP009302.1\|WP_039687907.1\|81376_83692_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.09015e-56
NZ_CP009302.1\|WP_039687901.1\|77975_78821_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	1.75653e-127
NZ_CP009302.1\|WP_039687937.1\|105853_107977_-\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293739	cd16015, LTA_synthase, Lipoteichoic acid synthase like. Lipoteichoic acid (LTA) is an important cell wall polymer found in Gram-positive bacteria. It may contain long chains of ribitol or glycerol phosphate. LTA synthase catalyzes the reaction to extend the polymer by the repeated addition of glycerolphosphate (GroP) subunits to the end of the growing chain.	2.61381e-07
NZ_CP009302.1\|WP_039687908.1\|83922_84588_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.41932e-86
NZ_CP009302.1\|WP_144299242.1\|103689_105843_-\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293739	cd16015, LTA_synthase, Lipoteichoic acid synthase like. Lipoteichoic acid (LTA) is an important cell wall polymer found in Gram-positive bacteria. It may contain long chains of ribitol or glycerol phosphate. LTA synthase catalyzes the reaction to extend the polymer by the repeated addition of glycerolphosphate (GroP) subunits to the end of the growing chain.	3.92062e-08
NZ_CP009302.1\|WP_039687903.1\|78817_80362_-\|ABC-transporter-permease-subunit	gnl\|CDD\|270330	cd13612, PBP2_ProWX, Substrate-binding protein ProWX of ABC-type osmoregulated transporter and its related proteins; the type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ProWX of Helicobacter pylori is predicted to be involved in uptake of compatible solutes such as choline, L-proline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ProWX belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.34365e-166
NZ_CP009302.1\|WP_039687912.1\|86423_87332_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	3.33931e-148
NZ_CP009302.1\|WP_039687935.1\|102627_103524_+\|acetamidase/formamidase-family-protein	gnl\|CDD\|225279	COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion].	7.60414e-86
NZ_CP009302.1\|WP_039687930.1\|97629_101340_-\|phosphoribosylformylglycinamidine-synthase	gnl\|CDD\|130916	TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis].	0
NZ_CP009302.1\|WP_039687914.1\|87340_87997_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	3.29729e-28
NZ_CP009302.1\|WP_039687924.1\|91788_93921_+\|C69-family-dipeptidase	gnl\|CDD\|227034	COG4690, PepD, Dipeptidase [Amino acid transport and metabolism].	1.21687e-39
NZ_CP009302.1\|WP_039687905.1\|80365_80980_-\|4Fe-4S-binding-protein	gnl\|CDD\|227348	COG5015, COG5015, Uncharacterized conserved protein [Function unknown].	2.3659e-27
NZ_CP009302.1\|WP_039687928.1\|95660_97469_+\|flavocytochrome-c	gnl\|CDD\|273816	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. [Energy metabolism, Electron transport].	8.81502e-132
NZ_CP009302.1\|WP_052241461.1\|90963_91416_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	4.27818e-07
NZ_CP009302.1\|WP_039687932.1\|101528_102563_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|224919	COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism].	4.34052e-90
NZ_CP009302.1\|WP_039687922.1\|90738_90924_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	4.84916e-06
NZ_CP009302.1\|WP_039687926.1\|94009_95422_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	2.50961e-16
NZ_CP009302.1\|WP_039687920.1\|89036_89327_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.54788e-29
NZ_CP009302.1\|WP_039687917.1\|87993_89025_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	4.79608e-171

>NZ_CP009302.1|WP_039687920.1|89036_89327_+|CRISPR-associated-endonuclease-Cas2
MMLLVTYDVDTADLAGERRLRKVARVCVSYGQRVQNSVFECVGDASVIEKMKSELLSVIDTDKDSLRFYNLGNGYHSKIEHHGAKPSYDAEGFLAL
>NZ_CP009302.1|WP_039687917.1|87993_89025_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRRLLNTLYILTEDAYLALDGDNVVAKQGGAELGRVPLHTLEGIQVFSYAGASPALMGACAAKGIAMGFYDRHGRFLADVQGEFVGNVLLRKAQYESAFDEERCLAIARNFILGKVFNCKWILERALRDHGLRIDASSVKEASSRLSASLTEIRSCRSLESLRGIEGDAAAVYFGVFDELILREKETFYFRGRTRRPPLDAVNAMLSLFYTVLARDCSAALRGVGLDPYMGFLHVERPGRRSLALDCMEELRPVLVDRFVLSAVNNRVVNSSHFQMRETGEVGLNSEGRRVLFDAWQNKKRESMTHPFVKEKIPWGLVPFVQAQLFGKFLRGDLDQYPPVFWK
>NZ_CP009302.1|WP_039687914.1|87340_87997_+|CRISPR-associated-protein-Cas4
MFDEDRYLALSGIQHFSFCRRQWALIHIERVWAENLLTVQGSLMHDRAHDEGIRERRGSMISVRGLNVHSRRLGIWGKCDVVEFHLDPEGHPLAGEDGLWRTVPIEYKRGSAKLVDADRLQLCAQAMCLEEMFAEDIKVGYLFYGQTRSRERVDMTDGLRTEVEGLLSEMQGLYDKRYVPRVKPFAACRSCSLCKLCLPKTSGMQVGSYIEKSLEGSL
>NZ_CP009302.1|WP_039687912.1|86423_87332_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSDPIKNRYDFVVYFDVENGNPNGDPDAGNMPRVDSETGYGLVTDVCLKRKIRNYVEMVREGQKGFEIYIKDGVPLNRSDMRAFESQGIEAGEVTKDSIKKLKKDDPELDAKLRDYMCQTFFDVRTFGAVMTTFVKNSLNCGQVRGPVQLTFARSVDPIVQQEVTITRVAITTEEAAEKKETEMGRKCIVPYALYRCEGFVSANLARKTTGFSEDDLELLWESIINMFEHDRSAARGKMAIRKLVVFKHDSEFGNAPAHSLFDLVRVQRKEGMEAPRSFSDYEGIVVDEAAVPEGVEVILKL
>NZ_CP009302.1|WP_039687910.1|84584_86396_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MMLAALARYYDQLLETHPEKVARPGWCARKVKFVIQLSSEGSVYSIVRDSEKNGLERVVPEQVKRSSGVSANFLCDNSSYLLGIDAKGKPERSEKCFAAARELHCDILRETDSVCARALRLFFETWDVASAREHPAVVAAGDELLTGGNIVFVVTHGGSSESALDDGEIVEAWDKRSAHSDSDDSPVMRCLVTGEKGPIARLHPIIQGVYGAQSSGASLVGFNSRAFESYGHEEEQGRNAPVSIRAARAYSTALNYLLKDRNHHTRLGDTTLVYWAERSDDENSELFGIALGDLGGEGASNVELTEKSLHETLQSVAEGKHRARPELDTTFYVAGLAPNAARLSVRFFFKDNFGDILENIAQHYRRIAIAHHPQDREYLTPYQLLHSLENPNAKKPTVMSVLSEPLMRAILFNARYPEAAYMQALQRTFSSQDNEDKRTKKVSRARVALIKACLLRNYGYDEEEVTVDLNEGRSSTAYALGRTFALLEQIQETANKSSNISGRYFNSACATPGVAFPALLRLTSAHLQKIGRDNPGLAHYFRTQLAGMIKEDRVSAFPKRLSSAEQGNFLLGYWHQQQKRYEKKEKVGSDSSDQVQSDQPSDV
>NZ_CP009302.1|WP_039687908.1|83922_84588_+|type-I-C-CRISPR-associated-protein-Cas5
MAFGVKVEVWGSNALIARPELSVERMTYDVLTPSAARGILESVYWHPGMRYVIDRIHVLNEIKRTSVRRNEISSKAQASAMRSALINGGAAPYVNAKSDIVQRASVVLVDVRYIIEAHFEMTDAAGSCDNPGKFCDILRRRLRKGQCYSQPYLGTREFACHCRLLEDEDIPTGFYARDGERDLGLMLFDMDYSDPSDIVPMFFRAVMKNGVIDVAGSEVYR
>NZ_CP009302.1|WP_039687907.1|81376_83692_+|CRISPR-associated-helicase/endonuclease-Cas3
MSSYVSHVSEDGSRREPIEVHLREVADMAAEFARPFEAEAWAYAAGIAHDIGKYSTEFQNRILHNGPKVDHSTAGAFELSKNPMAWPLSYCVAGHHGGLPDSGVREDDGVTLFGRLRKAEEGDIPSYSSFAESVEIPVVTGLPSVLSSHKQSAGQEKGARDLKFSAAFFTRMLFSCLVDADFLCTERFMKGAGRSELSAKSIPELCDMLENRLESFYPPKTDLNKIRCGILDDCLRAATGRAGVYSLTVPTGGGKTLAAMRFALQHSLRSNGETRRVIIAEPYTSIIEQNADVYRDIFGKENVLEHHMNFDFDEKEELDSCSDADLVSRLKLATENWDVPIVVTTNVQLFESLHSNKTSRCRKLHNIAGSVIVLDEAQMIPAPFLAPCVKVLAELVKYYHCSVVLCSATQPALERFFEEEGLSVSEIATSAKGLFDAMRRVTYRTIGAINDHDLAERLSECEQVLCIVNSRKQARSLYERMANEVDGNQDDRGIYHLSTLMYPDHRRRVIEKIRMRVKSSGGSCEACRVVSTSLVEAGVDLDFPVVYRALAGIDSIVQAGGRCNREGKRGLDDSKVYVFCPAEAYAIPPEVKQRASIAQGFLAEASEYVGLVKDGDAEFDFGLPETIRSFFDRLYFFKRANGSGGVNGLDREGILELLCRYTASKKGVFIQFAEVARKFQLIDQGSCPVIIPVPEIMDELRALKEGCISRIPLRKLTRFSVSVYDHDVKALLGAGAIEAVSEGVYVLADKKRYREDTGLDLEVQGGEGICW
>NZ_CP009302.1|WP_039687905.1|80365_80980_-|4Fe-4S-binding-protein
MTDAQHCLDLLREIKDVSFATVDEKGLPQIRIIDVMLVDEGSLYFCTSRGKDFHAQLLRNPHVAIVGMTRDWKMVRLAGVAKKIEDDPHGWIDRIFDENPSMNDVYPKDSRYVLDPFRIDSGCAELFDLGVSPIFRQTFSLGGAPAHVQGFTITESCISCGKCARNCPQQCIVPSKPFEIQQEHCLHCGLCYENCPVSAIKRRS
>NZ_CP009302.1|WP_039687903.1|78817_80362_-|ABC-transporter-permease-subunit
MLADTWNLFATRGDFFSGLLVEHIAISLASIAIAIVVGGVAGILISECQRTAKPTLAAVNFLYTIPSISMLGFLIPLSGVGNATAIIALTIYALLPMVRATHTGITNIDPALIEAAKGMGGTRLQTLVRIKVPLALPVVMSGIRNMAVMTIALAGIASFIGAGGLGVAIYRGITTNNAAMTVAGSLLIAGLALVVDLILGFAEKRMQMRSRAAKKTNRRLAAGALAICGIAAACILLPGIFTAPPATIHIATKPMTEQYIMGNMLERLIEQDTDLDVDVTQGVGGGTSNIEPALESGSFDLYPEYTGTGWAAVLKNGGTYSEDQFSELRAGYEKKGLSWVGMYGFGNTYGIAVRSDVAEKYDLKTYSDLAKVAGDLRLGAEADFFEREDGYEALCQAYGMRFGGTIQLDIGLKYDALERGSADALVVFTTDGKLSTADAVTLEDDLRFFPSYECGNVVRNQVLDEHPELRGVLEKLDGIITEQDMAQMNYEVEEMGRSPEDVAEEFLRGKELLQ
>NZ_CP009302.1|WP_039687901.1|77975_78821_-|ABC-transporter-ATP-binding-protein
MSASADIAIEYRHVSKSYGEKRVLHDFNLRVARGEFLTIVGSSGCGKTTALKMVNRLVEPSSGDVLVGGTNVRDIDAIALRRNIGYAIQGSVLFPHMTVGENISYVPDLLNGRDRKRTDEAVGKWMDIVGLPGEMRERYPAELSGGQQQRVGIARALAASPDILLMDEPFGAVDEITREQLQEEIARIHKECGITVLFVTHDIGEALRLGTKVLVMDAGAIQQHAAPQEILARPATEFVSRLVSRKRRTCDLDDGQLRSCTHSGAAQAEAAVAAKKEDLCR
>NZ_CP009302.1|WP_039687922.1|90738_90924_+|type-II-toxin-antitoxin-system-HicA-family-toxin
MPLTAREAARLIRRNGGRFVRHGGRHDIYETADGTEIQVPRHAKDLSPGVERDIKEKLGLR
>NZ_CP009302.1|WP_052241461.1|90963_91416_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MKYIYEAIIEPSGNWLEVRFPDFGIITQGEDMQDAAYMAQDLLENHIVMALRKGRSLPAPTFGNDCSDAGYRMGIVVDCDESTPQVDTMTVNEAADILDVSPTRIRAMISSGILKSQKVGMVHMVDAQSVMNRFNEPARAGRPKREAALA
>NZ_CP009302.1|WP_039687924.1|91788_93921_+|C69-family-dipeptidase
MKWGKGSFGKVIAAASATALAFSLAFPLSALACTQVYVGPGLTDTGDVYVGRAEDYAARHPKAFGIQEPRVNPEFSSDESNFKWTYPKTTFRYTYVRDLPSGWDNRTDAYSEAGTNEKGVSVSATLTTDYNDKVKAVDPCGSESYSDISGLGEYTIADIVLACSSTAREGVELLGSIIDTHGSYDCNQIIIADNTETWLFAQLSGHQWIGINLTAAYPDKVSVNPNIGQLKYKIDLSDKNVCLHSEKLEETAKAAGSAVYFDDGSLDVATSYGSDKPGTSQYTRLAQGRVYFGSPLADGSYTMGDKGVTSVSDPQLLFAPGNGKIDLFTALRSFAARGEQDSTLNANTNAGFYAIGNNRTVETHMYQIRKGLSADIATIQWENLSRSEFGIAVPSYSALLTQVNKDIYPAIDSWDEKHTGTKESVDSVDAAMDASTDNGSLDYVLMDINTLAYNNRDKLAGSTRTYLDALQKQLIAQQAVVDEIMQKTPAAERTDLANKLHDRASSETYAKAKALLDDMRAYLKGDQSAPFVPSDLDEATGLPKTPISYATPFVAPVFVAEPADATVEKGSAITLSAQANIPDGVEGSESHLAYEWFDADNPAAPIATGSKLDIDTSTVGSASYYCVATNDTSGLKATSRTAAITVSEPQAAPGTKTETTQKTMASSGDKGAHKAPQTSDPLSPVAPIALTAVGAALAAAASLRARKDGK
>NZ_CP009302.1|WP_039687926.1|94009_95422_-|helix-turn-helix-transcriptional-regulator
MDAHQHREFAAHWRSAFGRVSAIPFVFLGVGLYRAWLSIFFRFDAFPGIGVSDYFLFESAIGIASLALAFAAGRMGPLWQRPRTHVACAALMTAGAALLSFGCFALESPALRIGGLVLGGAGLGALILMWAEFYGSLNPLRVALYHALAISLGEAIKWLFMGLDTSHLVIFAIALPPVCFACVHASMKRLPEKQLGRPSVTGDAKSIPWKPIVLMATCTFAAAFGALPNQPLVGGNIAGALFVTALVFFGVLSASKWFNFDTVYQLAFPLFIVGFLFVMPAFGGNGQIMAFCYDAGYTMLSMYIMIVLSNITYRFGVSAVWLNGIERGIRYLVELAGWLTFFVASSHLGQNESGTLYDAIAIVVVLAFLVIFFTERGLSAKWGIVLDDSLEDESKASQSAMRASDLSRSFGLTPREEEVLQLLAQHMTVADIERALFVSQGTVKAHISHIYRKIGIHSKGELFDLLEGGR
>NZ_CP009302.1|WP_039687928.1|95660_97469_+|flavocytochrome-c
MSQFSRRQFLMGGSIAAIGTTLALTGCAPSGKKDAKGSSATGIAVGSGMGKHGSFTIEVSAKEGKIDRISVLDSRETPGMGDVAMEKLTKQIIDGQTLNVDAVSGATLTSMAFVGAVASALDEIGMKSDEWKKRDKADYVSESSVPAQADVVVIGAGGAGFAAAITAANEGRTVVLMEKMGVLGGDTALSGGEMAVPGNWIQAKEGISDSPDALAADMLKGGDNLGDPELVQIVAEGALESSQWLTFEGGVSWKHDLMQFGGHHTKRSLIPLTHSGSEMTTKLTRRAREIDAITLVDCMRATELVKKDGAVVGVKATNTVTGEQVSVSCKAVVMTTGGFGSNVEMRTKYNPAMNEKFLSTDSVGVTGDGIEMGEKVGANLLDMEHIQTYPVCDPGTGALLYVGDVRLEYQAIMVNKEGERFVEELERRDVISNAILKQTGEQGYLLFNQKGADATGLLETHADEYENILSRKVIVKADTLEEVCDGMGVDAEGAKKTLEKWNAYCKDGKDADFNYRGKMNPIEDGPFYLMACKPAVHYTMGGLQIDTEARVIDTDGSAIPGLYAAGEVTGHIMGTNRLGSCSMTDIFTFGRIAGRNAAQHSA
>NZ_CP009302.1|WP_039687930.1|97629_101340_-|phosphoribosylformylglycinamidine-synthase
MVSRVYVEKKPGFDVESHQLAHELRTILGVESLTGLRIVNRYDVEGISGDLFERCVPTVFSEPQTDIATYALPQSNGAAVFAVEFLPGQFDQRADSAAECVQLISQGERPEIATAKLYFLEGDLDAADIERIKDYVINPVEAREASLAVKTTVRTEQPNPEKVEVIDGFLNLGDDELSAFVSDRGLAMDLADAKLCQQYFADEGRNPTITEMKMIDTYWSDHCRHTTFGTELTDIAIDDDLARQTFERYLEIRRELGREEKPVCLMDLGTIGARYLKSKGVLKGLDESEEINACTVKATVDVDGVDEDWLFLFKNETHNHPTEIEPFGGAATCVGGCIRDPLSGRSYVYQAMRLTGAADPLVPVSATIPGKLPQRKLVTTAAAGYASYGNQIGLATGQVNELYHPGYAAKRMEIGAVVGAAPARNVRRETPAPGDVIILLGGRTGRDGIGGATGSSKAHDVESLESCGAEVQKGNAPIERKIQRLFRRGEATRLIKRCNDFGAGGVSVAVGELADGLSIDLDRVPKKYEGLDGTEIALSESQERMAVDVAAADVDEFIRYAHEENLEATPIATVTAEPRVVMTWQGDTIVDISRDFLASNGAPKQATAHVAAARSFAPGFEGSTLEERLTNVVTDLNVCSNKGLSERFDSTIGAGTVLMPFGGKYQLTPSLSMVAKFPVDGETSTVSGMAWGFNPHLSERNQYTGAYLAVVESVSKLVATGFKRESAYLTFQEYFGSLRNDPARWGLPVGSLLGALAAQLDLEVGAIGGKDSMSGSFEDLDVPPTLVSFAAAVGKLDTIVSPEFKEAGHRVIAICPVYRDGLLPDATSLRASLDGVESLIQSGAALSVSTPGYGCWAESVFKMCLGNQVGLALSSSFDVDELFEPSYGSFIVEIADGADIPQLPRVRTISLGSTQGAYHLDAAGESISLAQMQEAWEAKLEPVFPYRQAGDEVETVTYAQGTPLVYSGTIAKPRVIIPVFPGNNCEFDVARAFERAGAEPHIMVVNNLTPAHIAESARELAEQIRSSQIVMIPGGFSGGDEPDGSAKFITAFFRNPEVTEAVRNLLQQRDGLMLGICNGFQALIKLGLVPYGDIRPMDEDCPTLTFNTIGRHQSRIARTRVSSNLSPWLSLCEPGDIHTVAISHGEGRFVASDQLIEQLKATGQIATQYVDEHGRPSMDWSVNPNGSVLAVEGITSPDGRVLGKMGHTERTGNGTYLNIPDNTFQPLIEGGVNYFA
>NZ_CP009302.1|WP_039687932.1|101528_102563_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MIRFNNDYSQTGHPRVIEAVARTAGESHPGYGLDEHCDRARQIIRRVIGNPSADVHFVAGGTQANALVIRSLLAPYQGVLSASDGHINVHETGAIEFGGTKVIAVPAEDGKITATDIERHAVEFETSPVPEHVVEPKMAYLSFPNEFGALFSAAELREIADACHRHGWYLFIDGARLGYGLGSPACDATIQDVARAADVFTIGGTKCGALFGEAIVFSHEGLVPRFRSYIKQQGGMLAKGWLLGAQFEELFSDGLYFGITAHATELGLRIRDAFAAAGIPFQVASETNQQFVVLSDCQAERLAERYVFEPEGAAGEGRVCVRFCTSWATTDEEVDQLVEDIAVL
>NZ_CP009302.1|WP_039687935.1|102627_103524_+|acetamidase/formamidase-family-protein
MIELGNERVMYAFDKSLEAALTVESGDTVRIRTSDCFGDQVKSQADALDAIDWDRINPATGPVYVNGAVAGGALKVRIDAIEFDGCAVAATGKDEGVLGDRFDDWSTMFGTIEGDRLVFSDKLSLPLNPMIGVIGVAPAGAPVNCGTPGSHGGNMDNKAVTVGATLYFPVAVDGALFGCGDMHACMGDGEIGVSGAEAAGHATVTLTALPDLSLENPLIENETHFGTIASADTLDEAADRAVHDMLDLVCSRTEATEAEAAMLFSLQGDVQVCQMVDPQKTVRFMMPKEVLDVLGFKL
>NZ_CP009302.1|WP_144299242.1|103689_105843_-|sulfatase-like-hydrolase/transferase
MRNDQHMMNHPASRLRAHLCIAAFDLAACALAAIPLSFAFAQPAWAYVDPSVMTYTIQALAGVAVALSAVAGVAMRRTRKALLKALNIDVNRNKEVEADVCRIDPETGKPVKSETVGAAAQAPCKAPGKARDRRYAPGWKTRIPLALVTSTFFVFTLFVVAPYEIVAASAGSVFFSLNDVWQPIAVVAAAMIAALACLLSLLRGRAFNLALLLVFGIGLGCYAQALFLNGGLPPSDGHSITWNDYRRPMVVSGIVWLVLIIGPLQLSKVNRQRTQLGAAALSLALVIVQGVGVGSLFTNAATAGTSGDKAVVTEQGLYDVSSKKNVVVFVLDTYDTQFLQSTLQAAPDLLDDFKGFTWYRDSLGSMIPTRYGLSFLLHGQYPQPDEDFGTYLNQRYKRAHFLQDVQNLNFSTGIYTDTLGTQFLSDEEANSLVNSKTINVHPASNTITSWNSTLKALAKCALYRDMPWMLKPFFWFYTDEINQATNADNPDIDPANKPYIMNDAGYYNSLKQRGLTFQENDDQYDGAFRFIHMTGTHWPYNLDENGNDIGLHNANLTQQARGCMKPVQHYINQLKEMGVYDNTTIIITADHGDWYLTENPLEKVTVPYMLVKPAQSAELDSQPYKVSQAPVAAEDVLPTCIKYMGGDYSTYPGYSMDEIPEGLQRPRFFNMTLDRDAKDYKIIQYEVNGDSLDFANWKLTGVSWDVGEGSKAKGDHD
>NZ_CP009302.1|WP_039687937.1|105853_107977_-|sulfatase-like-hydrolase/transferase
MGDTGAPRKRRRALLLATFDIACCTLLACLLSFSLTQPAWAYVDPSVMTYTIQAIAGVAVALSAVAGVAMRRTRKKLLRALNVDENARKDVEADVHRVDPETRKAVGLPAKGEKREDRRSGSAVRNQAGRGESGFTPTWAQRAALSLAVSTFAVLTLLVVAPYETVVGSAGSIFFTLNDVWAPIALVAAGIAFALTAVLTMLRGRVFNAALLVLFAFGLGCYVQALFLNGGLPTADGGTVSWNELRKPMLVSTLVWAALVAIPLQLSKRNRKATQMGACALSLALVIVQGVGIASLASKANETASPQGEAVVTEQGLHTVSSKSNVVVFVLDTYDTQMLLDTFQTSTDMLDDFTGFTWYQDSLGSMIPTRYGLSFLLHGQYPKAEESMGTYLAERYKRSPFLADIQNLGYSTGVYTDSISTQFLTREEADEYVNDRTVNVHPVDHTVTNWPGTLKALFKCALFRDLPWLAKPYFWFYSDEITQATHVEGEELAPGNTPYIMDDARYFAALKDTRLSFQEDDDQRAGAFRFIHMTGTHPPYNLDENGNNVGMGNSTLVRQGRGSMRIVQEYLNQLKELGVYDKTTVIITADHGDWYMTETPLEKPTTPYMLVKPAQSADLDARPYQVSHAPIAAEDVLPTCIKYMGGDYSGYDGFAVDEVPAGLDRTRHFNMTLVRSGRDYRVIEYSVKGDSLDFTNWKLTGVSWDVG

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Crispr_ID: NZ_CP009302_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009302_2

586370-586479

Orphan

Consensus_repeat	Method
CGTCTCCGACGACGGCACGATCAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009302_2

>merge|NZ_CP009302|2|586370-586479|CRISPRCasFinder
CGTCTCCGACGACGGCACGATCAGCGACCAGCTCGGGCGCGTCTGGGACCTCAAGGCGCAGACCATCGACGGCAAGCACTACACCGTCTCGGACGACGGCACGATCAGCG

>NZ_CP009302|2|2|586370-586479|CRISPRCasFinder
CGTCTCCGACGACGGCACGATCAGCG	ACCAGCTCGGGCGCGTCTGGGACCTCAAGGCGCAGACCATCGACGGCAAGCACTACAC
CGTCTCGGACGACGGCACGATCAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009302.1\|WP_052241532.1\|591427_592336_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|119376
NZ_CP009302.1\|WP_039688508.1\|590854_591196_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009302.1\|WP_052241531.1\|582573_583155_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273713
NZ_CP009302.1\|WP_039688493.1\|581828_582146_+\|DUF3168-domain-containing-protein	unknown	unknown	unknown
NZ_CP009302.1\|WP_144299261.1\|593497_593875_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009302.1\|WP_039688516.1\|594867_595647_+\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NZ_CP009302.1\|WP_158407614.1\|583554_583719_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009302.1\|WP_144299260.1\|581201_581828_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009302.1\|WP_039688510.1\|591212_591428_+\|holin	unknown	unknown	gnl\|CDD\|293550
NZ_CP009302.1\|WP_158407615.1\|592684_592831_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009302.1\|WP_039688482.1\|577726_578881_+\|phage-portal-protein	unknown	unknown	gnl\|CDD\|273677
NZ_CP009302.1\|WP_039688486.1\|580921_581209_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009302.1\|WP_052241529.1\|578880_579681_+\|Clp-protease-ClpP	unknown	unknown	gnl\|CDD\|132927
NZ_CP009302.1\|WP_039688502.1\|587089_587947_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009302.1\|WP_039688506.1\|588406_590842_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377677
NZ_CP009302.1\|WP_039688484.1\|579703_580903_+\|phage-major-capsid-protein	unknown	unknown	gnl\|CDD\|273690
NZ_CP009302.1\|WP_039688495.1\|582142_582505_+\|HK97-gp10-family-phage-protein	unknown	unknown	gnl\|CDD\|377415
NZ_CP009302.1\|WP_039688512.1\|593853_594528_-\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
NZ_CP009302.1\|WP_039688497.1\|583157_583547_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009302.1\|WP_039688504.1\|587947_588406_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222888

Protein	Function_ID	Function_description	E-value
NZ_CP009302.1\|WP_039688482.1\|577726_578881_+\|phage-portal-protein	gnl\|CDD\|273677	TIGR01537, portal_protein, phage portal protein, HK97 family. This model represents one of several distantly related families of phage portal protein. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage head (capsid) and the tail proteins. It functions as a dodecamer of a single polypeptide of average mol. wt. of 40-90 KDa. [Mobile and extrachromosomal element functions, Prophage functions].	1.13552e-19
NZ_CP009302.1\|WP_052241531.1\|582573_583155_+\|hypothetical-protein	gnl\|CDD\|273713	TIGR01603, Uncharacterized_phage_related_protein, phage major tail protein, phi13 family. This model describes a set of proteins that share low levels of sequence similarity but similar lengths and similar patterns of charged, hydrophobic, and Gly/Pro residues. All members (except one attributed to mouse embryo cDNA) belong to phage of Gram-positive bacteria. Several are identified as phage major tail proteins. Some members of this family have additional C-terminal regions of about 100 residues not included in this model. [Mobile and extrachromosomal element functions, Prophage functions].	9.91091e-21
NZ_CP009302.1\|WP_039688516.1\|594867_595647_+\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	8.94117e-97
NZ_CP009302.1\|WP_039688506.1\|588406_590842_+\|hypothetical-protein	gnl\|CDD\|377677	pfam06605, Prophage_tail, Prophage endopeptidase tail. This family is of prophage tail proteins that are probably acting as endopeptidases.	1.7211e-09
NZ_CP009302.1\|WP_039688484.1\|579703_580903_+\|phage-major-capsid-protein	gnl\|CDD\|273690	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family. This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions].	1.36588e-08
NZ_CP009302.1\|WP_039688495.1\|582142_582505_+\|HK97-gp10-family-phage-protein	gnl\|CDD\|377415	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component. This family of proteins is found in the caudovirales. It may be a tail component.	0.000147887
NZ_CP009302.1\|WP_039688510.1\|591212_591428_+\|holin	gnl\|CDD\|293550	pfam16945, Phage_r1t_holin, Putative lactococcus lactis phage r1t holin. Phage_r1t_holin is a family of putative phage r1t holins from lactococcus. these holins carry two hydrophobic putative TMs separated by a short beta-turn region.	9.08494e-08
NZ_CP009302.1\|WP_039688512.1\|593853_594528_-\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	2.02726e-63
NZ_CP009302.1\|WP_052241532.1\|591427_592336_+\|hypothetical-protein	gnl\|CDD\|119376	cd06414, GH25_LytC-like, The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.	3.34201e-43
NZ_CP009302.1\|WP_052241529.1\|578880_579681_+\|Clp-protease-ClpP	gnl\|CDD\|132927	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function.	1.75817e-61
NZ_CP009302.1\|WP_039688504.1\|587947_588406_+\|hypothetical-protein	gnl\|CDD\|222888	PHA02582, 10, baseplate wedge subunit and tail pin; Provisional.	9.03679e-09

>NZ_CP009302.1|WP_158407614.1|583554_583719_+|hypothetical-protein
MALKRLGFSVGEVRRMSWRDYVVYGDVLAESLGSEGAGDEPKRATQADIDRLMG
>NZ_CP009302.1|WP_039688497.1|583157_583547_+|hypothetical-protein
MRTARIWGRDLEMVGGPYTFVVWERERGGDFLAALSDVQRRERVTVSDYLPFAWAMCATADDGTPGYDEWCRSPEWSAFDISEQGAGDVIAVISSALVAEFFPSAKAGRGPLARIRRLVRRAARRLRRA
>NZ_CP009302.1|WP_052241531.1|582573_583155_+|hypothetical-protein
MANMVEYGLSNVHVAFIGKDGAYETPKPVKGAVTLTADPEGDEKVFYADNTKYYVINKKGGYKGSLEMALLPEDVKARMLGDYIDESGHYVENANGKPEHFALLYQVEGDEVERGGCFFDVVAARPKVEHKTSEETVEVQTESVDISMLNKSFPEAGISTPKMVVHKADPDWGTFFTKVSEPKAPKASSVPGA
>NZ_CP009302.1|WP_039688495.1|582142_582505_+|HK97-gp10-family-phage-protein
MSEVTISLGDLGGELERVIRGYSDEVRKETERDVRAAARVAVEELRATSPKGTGEYAAGWAASVKRPAPGSVEAVVGNRDKPGLTHLLEKGHGGPHPAPARPHIEPAAERGIAELRRRMS
>NZ_CP009302.1|WP_039688493.1|581828_582146_+|DUF3168-domain-containing-protein
MDARELRRLLLETGMEVHYGHFTGDHPMPYLTYREVGTRDMSADNRALVRTRRWDIDLYTRGKQPEASAKVEALLDAHGIRFSATEYEAADGAFLQTVYEVRLMA
>NZ_CP009302.1|WP_144299260.1|581201_581828_+|hypothetical-protein
MLSRRPPFPRLVDGVALLYEDGGASAARGADFSDASLLTSPATPLAFAHASSRQTDMELATGEGFAFERKVRVRDAPAVRSARLALIGPDVFEVAYVDRDGGGYAYLFLDQLRSAGTVSLVADSGGCDDIGNPVGESRTPVHVRDTARAGAQAMDAARLGVARSVSVTLRERDYADERRFELGGRRYDVKSVRAANGWAVVTGERELA
>NZ_CP009302.1|WP_039688486.1|580921_581209_+|hypothetical-protein
MTSDELLARAKRKLNITWSDEGTDARVRDAIDAARPRLAHLLGLDGGSALLEQGEELGLLMEAVFYAFNDAADEFAENYAADILRVRMKHEARDA
>NZ_CP009302.1|WP_039688484.1|579703_580903_+|phage-major-capsid-protein
MTIQLNKAREAGSRLYQAFQTEGADSEAAFAQFAEAIADDVAEQYRCAVATQDSAVLQARGFRTLTSEETTYYQRITDALSAVDPKQAFATMGDNLMPITIIEDVMRNISKAHPLLARVKAVPAAALTRWVRNRDKGLAAVWGELNSEITKEITSAFDVVDIKQGKLSCFALVSQDMLKLGPVWLDGYVTTVLSEAIAIGLETGLVSGNGIKGQPVGIDRDIHQGVSINSGTGYPQKAAVKLADFGPAAYGAVVATLMTDEAGKAKSVNVVNGESLTLIVNNKTYLTKVMPGVRVMGADGIYRDSFPVPTEVIPSVAVADDRGVLALMDEYEMFVGADRGIEFSDDAKFLEDQRAFKAVLYAAGMAYDNTSAVLLDLSAVAEAAAPVKVKGTVSTKAEA
>NZ_CP009302.1|WP_052241529.1|578880_579681_+|Clp-protease-ClpP
MAKRFFQMVEAPTSAEIVIYGDICSYPWDESDVSSWGLSQRLAALPDTVEEVTVRINSYGGEVAEGVAIYNALRACKARVTTVCDGFACSIASVIFMAGEERVMSDASLLMIHNASSWAGGDAPKLRKLADDLDTITGLSRGIYLAATDLDEAELTRMMDDETWLTPEFCVEHGFATAVESSEASGPAQSARFNAKQLVELLTEQVHAKKPKAEREGRTVEAKLDAIMAHLGIGADDPAESDHGIGDQRIQAQEATHRLAEFFGRI
>NZ_CP009302.1|WP_039688482.1|577726_578881_+|phage-portal-protein
MGIVRTLYDWLGNRLDDGETGDIIAIQATAAATHMVAFKVAVGYVSAAISKADFRVYRDGRLSEGDEWSYLWTVAPNDNETANKLVSDLVWDMYSKGRGLVVPRGGRLYRAEPDPPTRQNPLGADEYASLRVGSASIPGPVSASDLFVFDLGDPDVRGLVESMGSQYARLVSAASDSFVSDASRRYKMKIETAQGGTEEERRKYEEWAEKNLRAFFEGKNAVLPEFKGRELVEFDKATATRRTSDDFVRLRKDCFEAVANAMKMPTSMLYGNVNNFGQVHQSFLTFAVAPVASMMEHELTAKVFGFDGWRRGDRFSIDLSHVKHVDLLDAAQDAEKLVSSSLMSPDQVMTFLGLDPLNEEWSRRHYMTRNYSLAGEANSEGGEN
>NZ_CP009302.1|WP_039688502.1|587089_587947_+|hypothetical-protein
MTMYDMEIGGESLLGRTGAVVADWTESPPEPVQRWIDVPGRQDGPIDASEAATGAPEYGRRRLDIRLLRIVDGSERAAVTWLTELRRWLHNRSLRFAVGWDPGYTYEGRFAVAENAAYDGVAEARLTVDCGPWKTKGERTYRVEASLGKTVVLRLGAPVVPTVTCDVPCLVNYMGETHAFGPGTSRDPSLVLRGPEAYLTVNATPDHGTAAWSAYEGRSWADYGWARLAYLAGAGGPEMEPRAWGDEPFDGTWADVGGTWLDNAYRVAENPPRRDVFFTYEWKDL
>NZ_CP009302.1|WP_039688504.1|587947_588406_+|hypothetical-protein
MASTTTGGIKLSKPDVTDQVTDTIKRLGDNFEAISAALYPIGCIYMSTVNKTPGFGTWEPIQGRFILGASSAYPAGSTGGEASHALTVSEMPRHNHSVLLKGQGSGGAGIDFSASGASGGPFGGGYIGETGSGAAHNNMPPYVAAYMWKRTA
>NZ_CP009302.1|WP_039688506.1|588406_590842_+|hypothetical-protein
MLRVDYGAEPLLDPRAGAFLSEAAFHWKAGQAGRFSAVLPPGHPLAGRVRVMDAASEVTLYEGGRITWQGRLTSIERRFDGSVAVEGEDALAYLNDTVVPPYANYAAPDYGGEPNAPRDAGELFAWLVERHNERAFLDSKRFRPGRSAAGRELLRSSTVWPTTASEIKSKLLGSGGILAVRYEGGAKVLDWLDDGAGEGGQEIEFGRNLLDFAREESAADVVNGIVPVSKPREGDPVSLDGWGGSTRGDYVLASGMVFDQAQASVQGIIAEKREYDASAPEKLVELAMADLDSAKLAVSSIEVSAVDLSAIDPSVPPIRYLDWVTVTSRPHGFRASMLCVERRLDALDPSKTRYVFGASRRTLTGGQARTEQYIRSAVAPAVEAVPALSEAARAAAETAEAAQAAAEAASAGAASSAERAERAVEDAEVAVEAASKVEGRPGVSPVVSIERKGSETVISVTDAEGVKTASVADGAPGPPGADGRDADPETVARIEAAAGEAAEAAEAAKSDAAAAREDAARASERSAELAMLVRDTPQGVVVGRDDGTGAFPEGSTRQSGDAFEVVAKGGSTVARFAKDALAMLGGRFSIEARPYDAGAYGTGVAAMIKSNIMAVLAEAGMTVGSSANSLMKFGMYGGFSIESSDTLGGGVKVVHDEMAPAFRIALTTGGKTTTLAVTGSGVQINGERVLRERDLYTAPSGANGFTNPTLSESAANFRHIDIYYHDNDGNSGSCRVYAPNGKRASLSTVWADNGAGGNMWIKSRVVSISGTSVKTYNNGTWNRTGDAQINGGAATNYYVANITIDKIVGYR
>NZ_CP009302.1|WP_039688508.1|590854_591196_+|hypothetical-protein
MDQMTMPVESLLAMATAVVSIAGLMATLSRDDRARIRDREDDARSRARTDAKLDMVVADVSEMRGGMERVDAKLDKLMIEQTRLDARIGNVEKRLDRLEDDHDKKCATTHGTR
>NZ_CP009302.1|WP_039688510.1|591212_591428_+|holin
MHLSDKDYIERWGKAAAVRCLKTAAQTAVALIGGDVVSVIALDWPQIVGVSITAAIVSLLTSVAGLPEVEA
>NZ_CP009302.1|WP_052241532.1|591427_592336_+|hypothetical-protein
MAVKVIDVSYAQGRMDWDAVAPHIGGAIIQLGYGSDFASQDDAQWSRNVAECRRLGVPFGAYLYSYARTDDIARSEVAHALRLLPPPSELAFPVYLDVEESSLGWFFRRAIEIWVSGLREAGYTAGWYSGRALANQYGLAAAPGETWVAEYGASRCAFSGRLDAWQYTSQEWIGGVGPLDASWFYRDYKASGGDGDDDMKLMDQEVIGPGGNVNAGQALGWSLHYSKDSSQALGRIEEKIAELEKKVEAIDPRYEAPAEFDYDKIVEAMAKKGMLQTAVDYDRLAAALAKAVNDDAAKRMAE
>NZ_CP009302.1|WP_158407615.1|592684_592831_-|hypothetical-protein
MYQRRAAAVLRYLGHEVRFVGPGESAAADLASEARRAGIASGFDRTAE
>NZ_CP009302.1|WP_144299261.1|593497_593875_+|hypothetical-protein
MSKIGRFALPRVPLGNQVERFISIFRDRRWMKARLVFGHSSDKGDSECKPAVFWQLRPPITHVDANPALFGGHELAERAIRAAGRSSGLRHGAAQREGCPGLRCSIRGRNPGEPDKVGSYAPYCS
>NZ_CP009302.1|WP_039688512.1|593853_594528_-|orotate-phosphoribosyltransferase
MESYKQEFIEFMVESDVLKFGDFTLKSGRKSPFFMNAGAYVTGDQLHRLGLYYARAIHDSFGLDFDVVFGPAYKGIPLSVITTMAISELYGKQVRYCSNRKEVKDHGDAGILLGSNLRDGDRVVMVEDVTTSGKSIEETFPLIKAQADVEVKGLMVSLNRMEVGKGGRKCALDEVSELYGFPTAAIVSMADVTEHLHNRECQGRVVIDDAMKERIDAYYEQYGA
>NZ_CP009302.1|WP_039688516.1|594867_595647_+|glutamate-racemase
MDEFDGYIGVFDSGVGGISVLKEAVAELPHENFLFFGDSAHAPYGEKSVEWVRERSEQIVDHLIASGVKAVVIACNTATSAAAEVLRAKYPDVPIIGVEPALKPAAISPEGDRILVMATQVTLGLEKFHKLSEEWGGDKVHTVACDGLAARIEQGNLGAPDLIELLESLIGPYCGRVTSVVLGCTHYPFIARQIQRVLGDDVMLFDGGEGTARHLALVLEEAELLSDYPGEGLVEFRSSKNSPEEIELYRWFFDRSLRA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	KT373978	Mycobacterium phage Ukulele, complete genome	48864-48897	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MF919525	Mycobacterium phage Murica, complete genome	50438-50471	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MK433262	Mycobacterium phage Nimrod, complete genome	50699-50732	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MK016498	Mycobacterium phage Manda, complete genome	50574-50607	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MG872843	Mycobacterium phage Sotrice96, complete genome	49732-49765	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MH651174	Mycobacterium phage Easy2Say, complete genome	50438-50471	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MH000607	Mycobacterium phage RiverMonster, complete genome	49651-49684	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MT723943	Mycobacterium phage Cactus, complete genome	48989-49022	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MT114165	Mycobacterium phage BadStone, complete genome	49534-49567	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MG872831	Mycobacterium phage Asriel, complete genome	48328-48361	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MK757445	Mycobacterium phage Lilizi, complete genome	49103-49136	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MH576953	Mycobacterium phage Hopey, complete genome	49605-49638	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	KX834009	Mycobacterium phage Goldilocks, complete genome	49270-49303	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MG099953	Mycobacterium phage Youngblood, complete genome	50433-50466	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MF919506	Mycobacterium phage FireRed, complete genome	50482-50515	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MK359320	Mycobacterium phage Cookies, complete genome	49170-49203	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	AY129331	Mycobacterium virus Cjw1, complete genome	50686-50719	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MN586043	Mycobacterium phage Buck, complete genome	50213-50246	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MH536829	Mycobacterium phage TBrady12, complete genome	49471-49504	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MN096364	Mycobacterium phage Tomaszewski, complete genome	48882-48915	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MH590587	Mycobacterium phage xkcd, complete genome	50623-50656	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MH371112	Mycobacterium phage Adnama, complete genome	49991-50024	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MF919541	Mycobacterium phage YassJohnny, complete genome	48921-48954	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	KX611831	Mycobacterium phage Pharsalus, complete genome	49510-49543	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	NC_042027	Mycobacterium phage Pumpkin, complete genome	50131-50164	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	KF493883	Mycobacterium phage Mosby, complete genome	48789-48822	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MH513978	Mycobacterium phage Phaja, complete genome	49536-49569	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MN428059	Mycobacterium phage Kanye, complete genome	49118-49151	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	KY549152	Mycobacterium phage Maxxinista, complete genome	49363-49396	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MH399778	Mycobacterium phage Icee, complete genome	49436-49469	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MF919529	Mycobacterium phage Sassay, complete genome	47751-47784	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MH513972	Mycobacterium phage IHOP, complete genome	49537-49570	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MN586051	Mycobacterium phage Myrale, complete genome	50132-50165	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MK359309	Mycobacterium phage Czyszczon1, complete genome	49495-49528	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	KU865303	Mycobacterium phage TeardropMSU, complete genome	48719-48752	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MF919524	Mycobacterium phage MISSy, complete genome	49494-49527	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	EU816588	Mycobacterium phage Porky, complete genome	48903-48936	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MT952854	Mycobacterium phage Miniwave, complete genome	49032-49065	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MK016502	Mycobacterium phage Pat3, complete genome	48242-48275	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	JF937106	Mycobacterium phage SirDuracell, complete genome	48337-48370	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	KC748969	Mycobacterium phage Phaux, complete genome	50477-50510	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MH536827	Mycobacterium phage Simpliphy, complete genome	49051-49084	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MH669002	Mycobacterium phage Emmina, complete genome	48895-48928	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	KR080204	Mycobacterium phage Mindy, complete genome	48579-48612	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	DQ398041	Mycobacterium virus 244, complete genome	49612-49645	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MG872832	Mycobacterium phage Barbarian, complete genome	48328-48361	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	NC_029079	Mycobacterium phage Dusk, complete genome	49194-49227	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MN586032	Mycobacterium phage Command613, complete genome	50028-50061	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	KC661277	Mycobacterium phage Phrux, complete genome	49073-49106	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	JF937096	Mycobacterium phage Henry, complete genome	49413-49446	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	NC_022065	Mycobacterium phage Contagion, complete genome	48789-48822	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	KX817173	Mycobacterium phage Tuco, complete genome	50481-50514	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MK937593	Mycobacterium phage Flypotenuse, complete genome	48979-49012	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MG757160	Mycobacterium phage Kimchi, complete genome	49775-49808	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MN096361	Mycobacterium phage Gator, complete genome	49825-49858	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MN586013	Mycobacterium phage Traaww1, complete genome	49157-49190	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MH020247	Mycobacterium phage MPhalcon, complete genome	49487-49520	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	JN391441	Mycobacterium phage Elph10, complete genome	48993-49026	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	KF306380	Mycobacterium phage DrDrey, complete genome	50414-50447	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MH576956	Mycobacterium phage Inca, complete genome	48062-48095	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MK620893	Mycobacterium phage HanKaySha, complete genome	49073-49106	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MH779503	Mycobacterium phage Gemini, complete genome	50289-50322	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	NC_022969	Mycobacterium phage PhatBacter, complete genome	50482-50515	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MN586019	Mycobacterium phage Stark, complete genome	49534-49567	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	NC_041850	Mycobacterium phage Eureka, complete genome	49459-49492	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	KF562099	Mycobacterium phage Bruin, complete genome	48508-48541	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	NC_028906	Mycobacterium phage Toto, complete genome	49973-50006	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	KY319168	Mycobacterium phage CrystalP, complete genome	49973-50006	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	KF562100	Mycobacterium phage HufflyPuff, complete genome	50438-50471	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MG872837	Mycobacterium phage Gage, complete genome	49772-49805	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MH536820	Mycobacterium phage Glexan, complete genome	50109-50142	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	NC_008194	Mycobacterium phage 244, complete genome	49612-49645	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	JF937091	Mycobacterium phage Bask21, complete genome	48948-48981	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	KF188414	Mycobacterium phage ABCat, complete genome	49965-49998	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	JN006062	Mycobacterium phage Rakim, complete genome	49587-49620	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MK801726	Mycobacterium phage ChotaBhai, complete genome	49313-49346	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MH727557	Mycobacterium phage Paperbeatsrock, complete genome	49710-49743	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	KF279417	Mycobacterium phage Quink, complete genome	50409-50442	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MH399774	Mycobacterium phage DoctorDiddles, complete genome	49357-49390	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	JN382248	Mycobacterium phage Lilac, complete genome	49390-49423	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	NC_028785	Mycobacterium phage NelitzaMV, complete genome	49078-49111	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MN586044	Mycobacterium phage Rimmer, complete genome	49823-49856	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MN586017	Mycobacterium phage OrionPax, complete genome	49084-49117	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	KT020852	Mycobacterium phage NoSleep, complete genome	49333-49366	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MK559429	Mycobacterium phage Moldemort, complete genome	49591-49624	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MF919535	Mycobacterium phage Terminus, complete genome	50506-50539	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	NC_022976	Mycobacterium phage Nala, complete genome	49996-50029	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	NC_021305	Mycobacterium phage Murphy, complete genome	49875-49908	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MF919540	Mycobacterium phage Willez, complete genome	47751-47784	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MT522005	Mycobacterium phage Misfit, complete genome	50506-50539	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MN586037	Mycobacterium phage GooberAzure, complete genome	49772-49805	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	KC691255	Mycobacterium phage Dumbo, complete genome	48894-48927	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	EU816591	Mycobacterium phage Kostya, complete genome	49636-49669	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MN586034	Mycobacterium phage Hoonter, complete genome	49772-49805	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	NC_022085	Mycobacterium phage Goku, complete genome	49188-49221	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	NC_004681	Mycobacterium phage Cjw1, complete genome	50686-50719	6	0.824
NZ_CP009302_1	1.4\|89733\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	89733-89766	34	MH513983	Mycobacterium phage ShereKhan, complete genome	50043-50076	6	0.824
NZ_CP009302_1	1.9\|90068\|34\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	90068-90101	34	NZ_CP022318	Brachybacterium avium strain VR2415 plasmid unnamed2, complete sequence	41557-41590	7	0.794
NZ_CP009302_1	1.11\|90203\|35\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	90203-90237	35	NZ_CP015585	Roseomonas gilardii strain U14-5 plasmid 1, complete sequence	39005-39039	7	0.8
NZ_CP009302_1	1.11\|90203\|35\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	90203-90237	35	NZ_CP023072	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence	358507-358541	9	0.743
NZ_CP009302_1	1.12\|90271\|35\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	90271-90305	35	KT803877	Burkholderia phage PE067, complete genome	9526-9560	9	0.743
NZ_CP009302_1	1.12\|90271\|35\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	90271-90305	35	MH809532	Burkholderia phage phiE131, complete genome	10204-10238	9	0.743
NZ_CP009302_1	1.12\|90271\|35\|NZ_CP009302\|PILER-CR,CRISPRCasFinder,CRT	90271-90305	35	MH809533	Burkholderia phage phiE058, complete genome	10204-10238	9	0.743

1. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to KT373978 (Mycobacterium phage Ukulele, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

2. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MF919525 (Mycobacterium phage Murica, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

3. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MK433262 (Mycobacterium phage Nimrod, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

4. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MK016498 (Mycobacterium phage Manda, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

5. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MG872843 (Mycobacterium phage Sotrice96, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

6. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MH651174 (Mycobacterium phage Easy2Say, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccccg	Protospacer
*  *** *********** *********** * *

7. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MH000607 (Mycobacterium phage RiverMonster, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

8. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MT723943 (Mycobacterium phage Cactus, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

9. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MT114165 (Mycobacterium phage BadStone, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

10. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MG872831 (Mycobacterium phage Asriel, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

11. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MK757445 (Mycobacterium phage Lilizi, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

12. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MH576953 (Mycobacterium phage Hopey, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

13. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to KX834009 (Mycobacterium phage Goldilocks, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

14. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MG099953 (Mycobacterium phage Youngblood, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

15. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MF919506 (Mycobacterium phage FireRed, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

16. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MK359320 (Mycobacterium phage Cookies, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

17. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to AY129331 (Mycobacterium virus Cjw1, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

18. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MN586043 (Mycobacterium phage Buck, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

19. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MH536829 (Mycobacterium phage TBrady12, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

20. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MN096364 (Mycobacterium phage Tomaszewski, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

21. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MH590587 (Mycobacterium phage xkcd, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

22. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MH371112 (Mycobacterium phage Adnama, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

23. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MF919541 (Mycobacterium phage YassJohnny, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

24. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to KX611831 (Mycobacterium phage Pharsalus, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

25. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to NC_042027 (Mycobacterium phage Pumpkin, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

26. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to KF493883 (Mycobacterium phage Mosby, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

27. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MH513978 (Mycobacterium phage Phaja, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

28. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MN428059 (Mycobacterium phage Kanye, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccccg	Protospacer
*  *** *********** *********** * *

29. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to KY549152 (Mycobacterium phage Maxxinista, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

30. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MH399778 (Mycobacterium phage Icee, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

31. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MF919529 (Mycobacterium phage Sassay, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

32. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MH513972 (Mycobacterium phage IHOP, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

33. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MN586051 (Mycobacterium phage Myrale, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

34. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MK359309 (Mycobacterium phage Czyszczon1, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

35. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to KU865303 (Mycobacterium phage TeardropMSU, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

36. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MF919524 (Mycobacterium phage MISSy, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

37. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to EU816588 (Mycobacterium phage Porky, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

38. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MT952854 (Mycobacterium phage Miniwave, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

39. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MK016502 (Mycobacterium phage Pat3, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

40. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to JF937106 (Mycobacterium phage SirDuracell, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

41. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to KC748969 (Mycobacterium phage Phaux, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

42. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MH536827 (Mycobacterium phage Simpliphy, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

43. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MH669002 (Mycobacterium phage Emmina, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

44. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to KR080204 (Mycobacterium phage Mindy, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

45. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to DQ398041 (Mycobacterium virus 244, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

46. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MG872832 (Mycobacterium phage Barbarian, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

47. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to NC_029079 (Mycobacterium phage Dusk, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

48. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MN586032 (Mycobacterium phage Command613, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

49. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to KC661277 (Mycobacterium phage Phrux, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

50. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to JF937096 (Mycobacterium phage Henry, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

51. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to NC_022065 (Mycobacterium phage Contagion, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

52. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to KX817173 (Mycobacterium phage Tuco, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

53. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MK937593 (Mycobacterium phage Flypotenuse, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

54. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MG757160 (Mycobacterium phage Kimchi, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccccg	Protospacer
*  *** *********** *********** * *

55. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MN096361 (Mycobacterium phage Gator, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

56. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MN586013 (Mycobacterium phage Traaww1, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

57. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MH020247 (Mycobacterium phage MPhalcon, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

58. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to JN391441 (Mycobacterium phage Elph10, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

59. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to KF306380 (Mycobacterium phage DrDrey, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

60. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MH576956 (Mycobacterium phage Inca, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

61. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MK620893 (Mycobacterium phage HanKaySha, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

62. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MH779503 (Mycobacterium phage Gemini, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

63. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to NC_022969 (Mycobacterium phage PhatBacter, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

64. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MN586019 (Mycobacterium phage Stark, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

65. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to NC_041850 (Mycobacterium phage Eureka, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

66. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to KF562099 (Mycobacterium phage Bruin, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

67. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to NC_028906 (Mycobacterium phage Toto, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

68. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to KY319168 (Mycobacterium phage CrystalP, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

69. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to KF562100 (Mycobacterium phage HufflyPuff, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

70. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MG872837 (Mycobacterium phage Gage, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccccg	Protospacer
*  *** *********** *********** * *

71. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MH536820 (Mycobacterium phage Glexan, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

72. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to NC_008194 (Mycobacterium phage 244, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

73. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to JF937091 (Mycobacterium phage Bask21, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

74. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to KF188414 (Mycobacterium phage ABCat, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

75. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to JN006062 (Mycobacterium phage Rakim, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

76. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MK801726 (Mycobacterium phage ChotaBhai, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

77. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MH727557 (Mycobacterium phage Paperbeatsrock, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

78. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to KF279417 (Mycobacterium phage Quink, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

79. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MH399774 (Mycobacterium phage DoctorDiddles, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

80. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to JN382248 (Mycobacterium phage Lilac, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

81. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to NC_028785 (Mycobacterium phage NelitzaMV, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

82. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MN586044 (Mycobacterium phage Rimmer, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

83. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MN586017 (Mycobacterium phage OrionPax, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

84. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to KT020852 (Mycobacterium phage NoSleep, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

85. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MK559429 (Mycobacterium phage Moldemort, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

86. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MF919535 (Mycobacterium phage Terminus, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

87. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to NC_022976 (Mycobacterium phage Nala, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

88. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to NC_021305 (Mycobacterium phage Murphy, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

89. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MF919540 (Mycobacterium phage Willez, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

90. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MT522005 (Mycobacterium phage Misfit, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

91. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MN586037 (Mycobacterium phage GooberAzure, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

92. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to KC691255 (Mycobacterium phage Dumbo, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

93. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to EU816591 (Mycobacterium phage Kostya, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

94. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MN586034 (Mycobacterium phage Hoonter, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

95. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to NC_022085 (Mycobacterium phage Goku, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

96. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to NC_004681 (Mycobacterium phage Cjw1, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

97. spacer 1.4|89733|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MH513983 (Mycobacterium phage ShereKhan, complete genome) position: , mismatch: 6, identity: 0.824

tggcgctgcgcttcctcgtttgctgcgttcgcgg	CRISPR spacer
tctcgcagcgcttcctcgattgctgcgttccctg	Protospacer
*  *** *********** *********** * *

98. spacer 1.9|90068|34|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022318 (Brachybacterium avium strain VR2415 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.794

ccgccgccgcgaacccgtcacgcggctccattag	CRISPR spacer
cccccgccgcgaacccgtcacgcgggacgatggc	Protospacer
** **********************  * ** .

99. spacer 1.11|90203|35|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015585 (Roseomonas gilardii strain U14-5 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.8

gcgcgtcggc--ctccctccgctgggaggagctgtcc	CRISPR spacer
--aactcggcatctcgctccgctgggaggagatgtcc	Protospacer
  .  *****  *** *************** *****

100. spacer 1.11|90203|35|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023072 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence) position: , mismatch: 9, identity: 0.743

gcgcg-tcggcctccctccgctgggaggagctgtcc	CRISPR spacer
-catgaccggcctccttctgctgggaggagcttgca	Protospacer
 *..* .********.**.*************  *

101. spacer 1.12|90271|35|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to KT803877 (Burkholderia phage PE067, complete genome) position: , mismatch: 9, identity: 0.743

gtgcccgacttcgtcgtcatgaacacgctcttgcc	CRISPR spacer
ggcggcgacttcgtcgtcatgaactcgatcgcgtc	Protospacer
*    ******************* ** ** .*.*

102. spacer 1.12|90271|35|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MH809532 (Burkholderia phage phiE131, complete genome) position: , mismatch: 9, identity: 0.743

gtgcccgacttcgtcgtcatgaacacgctcttgcc	CRISPR spacer
ggcggcgacttcgtcgtcatgaactcgatcgcgtc	Protospacer
*    ******************* ** ** .*.*

103. spacer 1.12|90271|35|NZ_CP009302|PILER-CR,CRISPRCasFinder,CRT matches to MH809533 (Burkholderia phage phiE058, complete genome) position: , mismatch: 9, identity: 0.743

gtgcccgacttcgtcgtcatgaacacgctcttgcc	CRISPR spacer
ggcggcgacttcgtcgtcatgaactcgatcgcgtc	Protospacer
*    ******************* ** ** .*.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

558587 : 587093

Bacillus_phage(30.77%)

tail,portal,protease,terminase,capsid,integrase

attL 550901:550918|attR 577236:577253

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
550901:550918	attL	NA	NA	NA	NA
WP_039688430.1\|558587_559688_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_158407608.1\|559809_560313_-	hypothetical protein	NA	NA	NA	NA
WP_039688435.1\|560434_561349_-	hypothetical protein	NA	NA	NA	NA
WP_052241522.1\|561434_562547_-	3'-5' exoribonuclease	A0A0U4J8W4	Pseudomonas_phage	1.9e-10	26.5
WP_082019719.1\|562543_563200_-	leucine-rich repeat domain-containing protein	NA	NA	NA	NA
WP_158407609.1\|563209_563905_-	helix-turn-helix domain-containing protein	A0A1B1P7L1	Bacillus_phage	1.4e-30	37.5
WP_144299256.1\|563989_564214_+	hypothetical protein	NA	NA	NA	NA
WP_039688439.1\|564687_564867_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_158407610.1\|564971_565124_+	hypothetical protein	NA	NA	NA	NA
WP_039688441.1\|565256_565607_-	hypothetical protein	NA	NA	NA	NA
WP_039688443.1\|565807_566038_+	hypothetical protein	NA	NA	NA	NA
WP_039688445.1\|566034_566241_+	hypothetical protein	NA	NA	NA	NA
WP_039688447.1\|566243_566576_+	hypothetical protein	NA	NA	NA	NA
WP_039688449.1\|566576_567731_+\|integrase	site-specific integrase	A0A2P1JYZ2	Mycobacterium_phage	4.6e-23	27.4
WP_039688450.1\|567852_568269_+	single-stranded DNA-binding protein	A0A1J0MFD7	Staphylococcus_phage	1.7e-15	32.7
WP_158407611.1\|568366_568960_+	hypothetical protein	A0A2I7RML4	Vibrio_phage	1.8e-10	40.4
WP_039688453.1\|569250_569667_+	ATP-binding protein	A0A2K9V3L7	Faecalibacterium_phage	8.2e-15	35.5
WP_039690381.1\|569802_570066_+	hypothetical protein	A0A2P1CE71	Mycobacterium_phage	5.5e-09	45.3
WP_039688455.1\|570055_570256_+	hypothetical protein	NA	NA	NA	NA
WP_039688458.1\|570252_570450_+	hypothetical protein	NA	NA	NA	NA
WP_039688459.1\|570474_570771_+	hypothetical protein	NA	NA	NA	NA
WP_082019861.1\|571063_571300_+	hypothetical protein	NA	NA	NA	NA
WP_158407612.1\|571296_571434_+	hypothetical protein	NA	NA	NA	NA
WP_039688463.1\|571430_571658_+	hypothetical protein	NA	NA	NA	NA
WP_039688465.1\|571654_572005_+	hypothetical protein	NA	NA	NA	NA
WP_039688468.1\|572001_572343_+	hypothetical protein	NA	NA	NA	NA
WP_039688470.1\|572374_572767_+	hypothetical protein	NA	NA	NA	NA
WP_039688472.1\|572831_573047_+	hypothetical protein	NA	NA	NA	NA
WP_052241526.1\|573047_573410_+	DUF3310 domain-containing protein	NA	NA	NA	NA
WP_039688474.1\|573457_573973_+	sigma-70 region 4 domain-containing protein	NA	NA	NA	NA
WP_158407613.1\|574209_574422_+	hypothetical protein	NA	NA	NA	NA
WP_039688478.1\|574418_574598_-	hypothetical protein	NA	NA	NA	NA
WP_144299259.1\|575084_575471_+	HNH endonuclease	NA	NA	NA	NA
WP_039688480.1\|575615_576068_+	hypothetical protein	NA	NA	NA	NA
WP_052241528.1\|576051_577716_+\|terminase	terminase large subunit	A0A1B1P766	Bacillus_phage	1.9e-107	38.4
577236:577253	attR	NA	NA	NA	NA
WP_039688482.1\|577726_578881_+\|portal	phage portal protein	NA	NA	NA	NA
WP_052241529.1\|578880_579681_+\|protease	Clp protease ClpP	A0A0H4TJ73	Erysipelothrix_phage	5.2e-34	48.9
WP_039688484.1\|579703_580903_+\|capsid	phage major capsid protein	A0A1B1P752	Bacillus_phage	8.4e-44	32.7
WP_039688486.1\|580921_581209_+	hypothetical protein	NA	NA	NA	NA
WP_144299260.1\|581201_581828_+	hypothetical protein	NA	NA	NA	NA
WP_039688493.1\|581828_582146_+	DUF3168 domain-containing protein	A6M957	Geobacillus_virus	4.8e-07	31.7
WP_039688495.1\|582142_582505_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_052241531.1\|582573_583155_+	hypothetical protein	A6M958	Geobacillus_virus	1.4e-28	39.0
WP_039688497.1\|583157_583547_+	hypothetical protein	NA	NA	NA	NA
WP_158407614.1\|583554_583719_+	hypothetical protein	NA	NA	NA	NA
WP_039688499.1\|583721_587093_+\|tail	phage tail tape measure protein	A0A142F1N0	Bacillus_phage	3.9e-30	36.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009302

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection