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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP010299 Staphylococcus aureus strain ATCC BAA1680 chromosome, complete genome 9 crisprs cas3,DEDDh,DinG,csa3,WYL 8 4 9 0

Results visualization

1. NZ_CP010299
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010299_1 433558-433658 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010299_2 672073-672165 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010299_3 834527-834612 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010299_4 877738-877819 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010299_5 940548-940830 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010299_6 1074220-1074307 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010299_7 2029517-2029595 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010299_8 2264774-2264924 Orphan NA
2 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010299_9 2388936-2389129 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP010299_4 4.1|877762|34|NZ_CP010299|CRISPRCasFinder 877762-877795 34 NZ_CP010299.1 1366720-1366753 0 1.0
NZ_CP010299_4 4.1|877762|34|NZ_CP010299|CRISPRCasFinder 877762-877795 34 NZ_CP010299.1 1455912-1455945 0 1.0
NZ_CP010299_9 9.2|2389015|36|NZ_CP010299|CRT 2389015-2389050 36 NZ_CP010299.1 1158495-1158530 0 1.0
NZ_CP010299_3 3.1|834557|26|NZ_CP010299|CRISPRCasFinder 834557-834582 26 NZ_CP010299.1 797494-797519 1 0.962
NZ_CP010299_3 3.1|834557|26|NZ_CP010299|CRISPRCasFinder 834557-834582 26 NZ_CP010299.1 2830247-2830272 1 0.962
NZ_CP010299_3 3.1|834557|26|NZ_CP010299|CRISPRCasFinder 834557-834582 26 NZ_CP010299.1 2830303-2830328 1 0.962
NZ_CP010299_5 5.1|940578|26|NZ_CP010299|CRT 940578-940603 26 NZ_CP010299.1 940522-940547 1 0.962
NZ_CP010299_5 5.3|940692|26|NZ_CP010299|CRT 940692-940717 26 NZ_CP010299.1 834613-834638 1 0.962
NZ_CP010299_7 7.1|2029540|33|NZ_CP010299|CRISPRCasFinder 2029540-2029572 33 NZ_CP010299.1 834593-834625 1 0.97
NZ_CP010299_7 7.1|2029540|33|NZ_CP010299|CRISPRCasFinder 2029540-2029572 33 NZ_CP010299.1 1158551-1158583 1 0.97
NZ_CP010299_7 7.1|2029540|33|NZ_CP010299|CRISPRCasFinder 2029540-2029572 33 NZ_CP010299.1 1366675-1366707 1 0.97
NZ_CP010299_7 7.1|2029540|33|NZ_CP010299|CRISPRCasFinder 2029540-2029572 33 NZ_CP010299.1 1694548-1694580 1 0.97
NZ_CP010299_7 7.1|2029540|33|NZ_CP010299|CRISPRCasFinder 2029540-2029572 33 NZ_CP010299.1 2664896-2664928 1 0.97
NZ_CP010299_9 9.2|2389015|36|NZ_CP010299|CRT 2389015-2389050 36 NZ_CP010299.1 1872842-1872877 1 0.972
NZ_CP010299_3 3.1|834557|26|NZ_CP010299|CRISPRCasFinder 834557-834582 26 NZ_CP010299.1 797550-797575 2 0.923
NZ_CP010299_3 3.1|834557|26|NZ_CP010299|CRISPRCasFinder 834557-834582 26 NZ_CP010299.1 940522-940547 2 0.923
NZ_CP010299_5 5.1|940578|26|NZ_CP010299|CRT 940578-940603 26 NZ_CP010299.1 797494-797519 2 0.923
NZ_CP010299_5 5.1|940578|26|NZ_CP010299|CRT 940578-940603 26 NZ_CP010299.1 2830247-2830272 2 0.923
NZ_CP010299_5 5.1|940578|26|NZ_CP010299|CRT 940578-940603 26 NZ_CP010299.1 2830303-2830328 2 0.923
NZ_CP010299_5 5.3|940692|26|NZ_CP010299|CRT 940692-940717 26 NZ_CP010299.1 394891-394916 2 0.923
NZ_CP010299_7 7.1|2029540|33|NZ_CP010299|CRISPRCasFinder 2029540-2029572 33 NZ_CP010299.1 1455958-1455990 2 0.939
NZ_CP010299_9 9.1|2388959|33|NZ_CP010299|CRT 2388959-2388991 33 NZ_CP010299.1 834593-834625 2 0.939
NZ_CP010299_9 9.1|2388959|33|NZ_CP010299|CRT 2388959-2388991 33 NZ_CP010299.1 1158551-1158583 2 0.939
NZ_CP010299_9 9.1|2388959|33|NZ_CP010299|CRT 2388959-2388991 33 NZ_CP010299.1 1366675-1366707 2 0.939
NZ_CP010299_9 9.1|2388959|33|NZ_CP010299|CRT 2388959-2388991 33 NZ_CP010299.1 1455958-1455990 2 0.939
NZ_CP010299_9 9.1|2388959|33|NZ_CP010299|CRT 2388959-2388991 33 NZ_CP010299.1 2664896-2664928 2 0.939
NZ_CP010299_9 9.2|2389015|36|NZ_CP010299|CRT 2389015-2389050 36 NZ_CP010299.1 1694487-1694522 2 0.944
NZ_CP010299_9 9.2|2389015|36|NZ_CP010299|CRT 2389015-2389050 36 NZ_CP010299.1 2040402-2040437 2 0.944
NZ_CP010299_9 9.3|2389074|33|NZ_CP010299|CRT 2389074-2389106 33 NZ_CP010299.1 834593-834625 2 0.939
NZ_CP010299_9 9.3|2389074|33|NZ_CP010299|CRT 2389074-2389106 33 NZ_CP010299.1 1158551-1158583 2 0.939
NZ_CP010299_9 9.3|2389074|33|NZ_CP010299|CRT 2389074-2389106 33 NZ_CP010299.1 1366675-1366707 2 0.939
NZ_CP010299_9 9.3|2389074|33|NZ_CP010299|CRT 2389074-2389106 33 NZ_CP010299.1 2664896-2664928 2 0.939

1. spacer 4.1|877762|34|NZ_CP010299|CRISPRCasFinder matches to position: 1366720-1366753, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

2. spacer 4.1|877762|34|NZ_CP010299|CRISPRCasFinder matches to position: 1455912-1455945, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

3. spacer 9.2|2389015|36|NZ_CP010299|CRT matches to position: 1158495-1158530, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttctttttgaaattctcta	Protospacer
************************************

4. spacer 3.1|834557|26|NZ_CP010299|CRISPRCasFinder matches to position: 797494-797519, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgcctgcttctgtgttggggccccg	Protospacer
***** ********************

5. spacer 3.1|834557|26|NZ_CP010299|CRISPRCasFinder matches to position: 2830247-2830272, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
************.*************

6. spacer 3.1|834557|26|NZ_CP010299|CRISPRCasFinder matches to position: 2830303-2830328, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctttgttggggccccg	Protospacer
************ *************

7. spacer 5.1|940578|26|NZ_CP010299|CRT matches to position: 940522-940547, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaggctggtgg	Protospacer
***********************.**

8. spacer 5.3|940692|26|NZ_CP010299|CRT matches to position: 834613-834638, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacacagaagctgacga	Protospacer
**********************.***

9. spacer 7.1|2029540|33|NZ_CP010299|CRISPRCasFinder matches to position: 834593-834625, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

10. spacer 7.1|2029540|33|NZ_CP010299|CRISPRCasFinder matches to position: 1158551-1158583, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

11. spacer 7.1|2029540|33|NZ_CP010299|CRISPRCasFinder matches to position: 1366675-1366707, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

12. spacer 7.1|2029540|33|NZ_CP010299|CRISPRCasFinder matches to position: 1694548-1694580, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattatagtaagctgacttttcgtcagcttctg	Protospacer
****** **************************

13. spacer 7.1|2029540|33|NZ_CP010299|CRISPRCasFinder matches to position: 2664896-2664928, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

14. spacer 9.2|2389015|36|NZ_CP010299|CRT matches to position: 1872842-1872877, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

15. spacer 3.1|834557|26|NZ_CP010299|CRISPRCasFinder matches to position: 797550-797575, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgcctgcttctatgttggggccccg	Protospacer
***** ******.*************

16. spacer 3.1|834557|26|NZ_CP010299|CRISPRCasFinder matches to position: 940522-940547, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccaccagcctctgtgttggggccccg	Protospacer
**.*****.*****************

17. spacer 5.1|940578|26|NZ_CP010299|CRT matches to position: 797494-797519, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*****************.** *****

18. spacer 5.1|940578|26|NZ_CP010299|CRT matches to position: 2830247-2830272, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.***.********

19. spacer 5.1|940578|26|NZ_CP010299|CRT matches to position: 2830303-2830328, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacaaagaagctggcgg	Protospacer
************* ***.********

20. spacer 5.3|940692|26|NZ_CP010299|CRT matches to position: 394891-394916, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacaaagaagctgacga	Protospacer
************* ********.***

21. spacer 7.1|2029540|33|NZ_CP010299|CRISPRCasFinder matches to position: 1455958-1455990, mismatch: 2, identity: 0.939

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
******.******************* ******

22. spacer 9.1|2388959|33|NZ_CP010299|CRT matches to position: 834593-834625, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

23. spacer 9.1|2388959|33|NZ_CP010299|CRT matches to position: 1158551-1158583, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

24. spacer 9.1|2388959|33|NZ_CP010299|CRT matches to position: 1366675-1366707, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

25. spacer 9.1|2388959|33|NZ_CP010299|CRT matches to position: 1455958-1455990, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
********** ***************.******

26. spacer 9.1|2388959|33|NZ_CP010299|CRT matches to position: 2664896-2664928, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

27. spacer 9.2|2389015|36|NZ_CP010299|CRT matches to position: 1694487-1694522, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

28. spacer 9.2|2389015|36|NZ_CP010299|CRT matches to position: 2040402-2040437, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaattctcta	Protospacer
********************.***.***********

29. spacer 9.3|2389074|33|NZ_CP010299|CRT matches to position: 834593-834625, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

30. spacer 9.3|2389074|33|NZ_CP010299|CRT matches to position: 1158551-1158583, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

31. spacer 9.3|2389074|33|NZ_CP010299|CRT matches to position: 1366675-1366707, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

32. spacer 9.3|2389074|33|NZ_CP010299|CRT matches to position: 2664896-2664928, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP010299_5 5.4|940748|53|NZ_CP010299|CRT 940748-940800 53 MG543995 Staphylococcus phage UPMK_1, partial genome 76246-76298 4 0.925
NZ_CP010299_3 3.1|834557|26|NZ_CP010299|CRISPRCasFinder 834557-834582 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
NZ_CP010299_3 3.1|834557|26|NZ_CP010299|CRISPRCasFinder 834557-834582 26 NZ_CP034332 Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence 3359-3384 5 0.808
NZ_CP010299_3 3.1|834557|26|NZ_CP010299|CRISPRCasFinder 834557-834582 26 NZ_CP022605 Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence 715511-715536 5 0.808
NZ_CP010299_5 5.3|940692|26|NZ_CP010299|CRT 940692-940717 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
NZ_CP010299_7 7.1|2029540|33|NZ_CP010299|CRISPRCasFinder 2029540-2029572 33 NC_021536 Synechococcus phage S-IOM18 genomic sequence 159745-159777 10 0.697

1. spacer 5.4|940748|53|NZ_CP010299|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttgagaaactatcatttctgtcccactccctt	Protospacer
************************ **** *********************  

2. spacer 3.1|834557|26|NZ_CP010299|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
acgccagcttctgtgttgaggcctta	Protospacer
 *****************.****...

3. spacer 3.1|834557|26|NZ_CP010299|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtctgggcctac	Protospacer
****************. *****.  

4. spacer 3.1|834557|26|NZ_CP010299|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtttggccctga	Protospacer
***************** ** **. .

5. spacer 5.3|940692|26|NZ_CP010299|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcga	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
...****.***************** 

6. spacer 7.1|2029540|33|NZ_CP010299|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 10, identity: 0.697

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
ttttatcgtaaggtgagttttcgtcaagcacct	Protospacer
. ********** *** *********. . *. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 766184 : 774005 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 785977 : 800708 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 879300 : 898530 25 Staphylococcus_phage(63.16%) integrase,capsid,terminase attL 881837:881853|attR 895793:895809
DBSCAN-SWA_4 1059444 : 1067917 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 1509684 : 1596922 106 Staphylococcus_phage(84.21%) plate,portal,tail,terminase,protease,holin,head,tRNA,integrase,capsid attL 1546047:1546067|attR 1591940:1591960
DBSCAN-SWA_6 1666110 : 1674422 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_7 1743559 : 1752602 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_8 1877905 : 1957238 74 Staphylococcus_phage(96.55%) protease,tRNA,transposase NA
DBSCAN-SWA_9 2042498 : 2142738 120 Staphylococcus_phage(88.75%) portal,tail,terminase,protease,holin,head,tRNA,integrase,capsid attL 2103924:2103941|attR 2128855:2128872
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage