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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP007003 Trueperella pyogenes TP8, complete genome 2 crisprs DEDDh,csa3,cas4,WYL,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3 0 3 2 0

Results visualization

1. NZ_CP007003
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007003_1 854954-855040 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007003_2 1865525-1867309 TypeI-E I-E
29 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP007003_2 2.3|1865675|33|NZ_CP007003|CRISPRCasFinder,CRT,PILER-CR 1865675-1865707 33 NC_010510 Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence 383473-383505 9 0.727
NZ_CP007003_2 2.25|1867005|33|NZ_CP007003|CRISPRCasFinder,CRT,PILER-CR 1867005-1867037 33 DQ372923 Bacteriophage mu1/6, complete genome 10379-10411 9 0.727
NZ_CP007003_2 2.25|1867005|33|NZ_CP007003|CRISPRCasFinder,CRT,PILER-CR 1867005-1867037 33 NC_007967 Streptomyces phage mu1/6, complete genome 10379-10411 9 0.727
NZ_CP007003_2 2.18|1866578|33|NZ_CP007003|CRISPRCasFinder,CRT,PILER-CR 1866578-1866610 33 NZ_CP013139 Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence 201888-201920 10 0.697

1. spacer 2.3|1865675|33|NZ_CP007003|CRISPRCasFinder,CRT,PILER-CR matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 9, identity: 0.727

tacgaggacgatcacgaaccgatcctgtatggg	CRISPR spacer
cgcgaggacgatcaggatccgatcctcgtcgcg	Protospacer
..************ ** ********   .* *

2. spacer 2.25|1867005|33|NZ_CP007003|CRISPRCasFinder,CRT,PILER-CR matches to DQ372923 (Bacteriophage mu1/6, complete genome) position: , mismatch: 9, identity: 0.727

cggcctgctcagccaacgacggcatgttggtcg	CRISPR spacer
cggcctgctcggccagcgacggcagcccgtgcc	Protospacer
**********.****.********  ..*  * 

3. spacer 2.25|1867005|33|NZ_CP007003|CRISPRCasFinder,CRT,PILER-CR matches to NC_007967 (Streptomyces phage mu1/6, complete genome) position: , mismatch: 9, identity: 0.727

cggcctgctcagccaacgacggcatgttggtcg	CRISPR spacer
cggcctgctcggccagcgacggcagcccgtgcc	Protospacer
**********.****.********  ..*  * 

4. spacer 2.18|1866578|33|NZ_CP007003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 10, identity: 0.697

cgggcttgcggcactgataacggcgctcgccgg	CRISPR spacer
cctgcttggggcactggtaacggcgctgtatat	Protospacer
*  ***** *******.**********   .. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 698763 : 712581 14 Synechococcus_phage(22.22%) NA NA
DBSCAN-SWA_2 847649 : 865434 17 Propionibacterium_phage(41.67%) terminase,portal NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage