CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP007641	Rhizobium etli bv. phaseoli str. IE4803 chromosome RetIE4803, complete sequence	2 crisprs	WYL,cas3,csa3,DEDDh	1	4
NZ_CP007644	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence	0 crisprs	csa3	0	0
NZ_CP007642	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803a, complete sequence	0 crisprs	csa3,DEDDh	0	0
NZ_CP007645	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence	0 crisprs	NA	0	1
NZ_CP007643	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803b, complete sequence	0 crisprs	NA	0	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007641_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007641_1

1958769-1958861

Orphan

Consensus_repeat	Method
GATCGGCAACGGCGTGCAGATCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007641_1

>merge|NZ_CP007641|1|1958769-1958861|CRISPRCasFinder
CATCGGTCCGGGCGTCAAGATCGGTCGGGATTGTTCGATTGCAGCCGGCGCCAGCATTCTCTGTGCGCTGATCGGCAACGGCGTCATCATCCA

>NZ_CP007641|1|1|1958769-1958861|CRISPRCasFinder
CATCGGTCCGGGCGTCAAGATCG	GTCGGGATTGTTCGATTGCAGCCGGCGCCAGCATTCTCTGTGCGCT
GATCGGCAACGGCGTCATCATCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007641.1\|WP_038688684.1\|1959346_1959814_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NZ_CP007641.1\|WP_038688689.1\|1961510_1962680_+\|lipid-A-disaccharide-synthase	unknown	unknown	gnl\|CDD\|234580
NZ_CP007641.1\|WP_038688680.1\|1955896_1958236_+\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|274514
NZ_CP007641.1\|WP_039619559.1\|1969505_1970780_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP007641.1\|WP_009994476.1\|1968518_1969364_+\|3-deoxy-8-phosphooctulonate-synthase	unknown	unknown	gnl\|CDD\|235363
NZ_CP007641.1\|WP_039619547.1\|1953707_1954538_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NZ_CP007641.1\|WP_038688686.1\|1959810_1960629_+\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	unknown	unknown	gnl\|CDD\|235390
NZ_CP007641.1\|WP_008526906.1\|1949541_1950309_+\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|183428
NZ_CP007641.1\|WP_039619540.1\|1948202_1949309_+\|substrate-binding-domain-containing-protein	unknown	unknown	unknown
NZ_CP007641.1\|WP_009994369.1\|1950548_1951475_+\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
NZ_CP007641.1\|WP_039619554.1\|1966710_1967430_-\|transcriptional-repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NZ_CP007641.1\|WP_038688678.1\|1954575_1955700_+\|RIP-metalloprotease-RseP	unknown	unknown	gnl\|CDD\|223821
NZ_CP007641.1\|WP_039619543.1\|1951571_1952294_+\|UMP-kinase	unknown	unknown	gnl\|CDD\|239787
NZ_CP007641.1\|WP_039619552.1\|1964297_1966730_+\|ComEC/Rec2-family-competence-protein	unknown	unknown	gnl\|CDD\|377126
NZ_CP007641.1\|WP_039619538.1\|1947585_1948203_+\|5-bromo-4-chloroindolyl-phosphate-hydrolysis-family-protein	unknown	unknown	gnl\|CDD\|378398
NZ_CP007641.1\|WP_039619546.1\|1952366_1952927_+\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_CP007641.1\|WP_039619556.1\|1967625_1968522_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203
NZ_CP007641.1\|WP_038688692.1\|1962717_1964007_-\|citrate-(Si)-synthase	unknown	unknown	gnl\|CDD\|180164
NZ_CP007641.1\|WP_038688674.1\|1952964_1953708_+\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|237829
NZ_CP007641.1\|WP_038688688.1\|1960632_1961514_+\|LpxI-family-protein	unknown	unknown	gnl\|CDD\|226025

Protein	Function_ID	Function_description	E-value
NZ_CP007641.1\|WP_038688684.1\|1959346_1959814_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	7.58043e-92
NZ_CP007641.1\|WP_038688689.1\|1961510_1962680_+\|lipid-A-disaccharide-synthase	gnl\|CDD\|234580	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed.	1.4958e-169
NZ_CP007641.1\|WP_038688680.1\|1955896_1958236_+\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|274514	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP007641.1\|WP_039619559.1\|1969505_1970780_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP007641.1\|WP_009994476.1\|1968518_1969364_+\|3-deoxy-8-phosphooctulonate-synthase	gnl\|CDD\|235363	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional.	0
NZ_CP007641.1\|WP_039619547.1\|1953707_1954538_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	7.46585e-48
NZ_CP007641.1\|WP_038688674.1\|1952964_1953708_+\|isoprenyl-transferase	gnl\|CDD\|237829	PRK14834, PRK14834, isoprenyl transferase.	4.67668e-136
NZ_CP007641.1\|WP_008526906.1\|1949541_1950309_+\|30S-ribosomal-protein-S2	gnl\|CDD\|183428	PRK12311, rpsB, 30S ribosomal protein S2.	1.19783e-166
NZ_CP007641.1\|WP_039619552.1\|1964297_1966730_+\|ComEC/Rec2-family-competence-protein	gnl\|CDD\|377126	pfam03772, Competence, Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.	2.2817e-51
NZ_CP007641.1\|WP_009994369.1\|1950548_1951475_+\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	3.41252e-144
NZ_CP007641.1\|WP_039619554.1\|1966710_1967430_-\|transcriptional-repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	1.07185e-116
NZ_CP007641.1\|WP_038688678.1\|1954575_1955700_+\|RIP-metalloprotease-RseP	gnl\|CDD\|223821	COG0750, COG0750, Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane].	2.82568e-83
NZ_CP007641.1\|WP_039619543.1\|1951571_1952294_+\|UMP-kinase	gnl\|CDD\|239787	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).	1.36326e-128
NZ_CP007641.1\|WP_039619556.1\|1967625_1968522_+\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.50134e-25
NZ_CP007641.1\|WP_039619538.1\|1947585_1948203_+\|5-bromo-4-chloroindolyl-phosphate-hydrolysis-family-protein	gnl\|CDD\|378398	pfam10112, Halogen_Hydrol, 5-bromo-4-chloroindolyl phosphate hydrolysis protein. Members of this family of prokaryotic proteins mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.	6.51959e-19
NZ_CP007641.1\|WP_039619546.1\|1952366_1952927_+\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	2.18294e-101
NZ_CP007641.1\|WP_038688692.1\|1962717_1964007_-\|citrate-(Si)-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
NZ_CP007641.1\|WP_038688686.1\|1959810_1960629_+\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	gnl\|CDD\|235390	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase.	7.66743e-143
NZ_CP007641.1\|WP_038688688.1\|1960632_1961514_+\|LpxI-family-protein	gnl\|CDD\|226025	COG3494, COG3494, Uncharacterized protein conserved in bacteria [Function unknown].	1.19221e-109

>NZ_CP007641.1|WP_038688680.1|1955896_1958236_+|outer-membrane-protein-assembly-factor-BamA
MKAGSKFLNAVSAVALSASVVASGAGALTFVSATAAEAAVIQRIDVRGASRVGAEAVRSNLTITPGKSFSNTDIDDSVKQLYGTGYFSDVKISVSGGTLVVNVQEAQLVNQVVFNGNRKIKDDKLATIVQTHAAGPYSDTQIQADIQAIKEAYAATGRSEVEVTTQVVPLGEGRVNLAFVINEGDRTKIDAINFVGNNAYSAGRLAAVINTKRSNFLSFLTRKDVYNEDKLHADEEALRQFYYNRGYADMRIVSSDASFDEATNKYTLTFNIEEGQRYDFGPVTVQSTVEGVGSDQLLPLVRTKEGHVYSAKEVQKSIEAISDQVASAGYPFARVTPRGNRDLNNNTIGVEYLVDQGERAYVERIEIRGNSRTRDYVIRREFDMSEGDAFNQQMITKAKRRLEALGYFSSVNISTQPGSSPDRVVVVVDVQDQSTGSFGVGAGYAAGGDGLLLEASIEEKNFLGRGQYIRISAGGGQEGSRAYGVSFTEPYFLGYRLAAGFDVNHSETSSNDNYDYEETSVVLRVTAPITEDLATTFRYNYKQMKYDADNGDLSDLSAPYQHLVEDSPWTRSSISQTLTYNTLDDTVLPREGIYATATQEIAGLGGDSQFYKIYGKARYYHLLADDADIIGSVSASAGYVVGFGEHLNVFDQFTLTNGDIRGFENKGIGPRVAGTNDDPLGGTTYFTASAEATFPMPGFPRDFNLRGAVFADAGTLFGNDVDLRGDGIEGEDASLRASVGVGVVWQSPFGSLRLDYAIPVLKEDFDKTQNFKFGINNQF
>NZ_CP007641.1|WP_038688678.1|1954575_1955700_+|RIP-metalloprotease-RseP
MSGLYTFLMGNVVTFILVLSLLVFVHEMGHYLVGRWSGIRILAFSVGFGPEIFGFTDRHGTRWKISAIPLGGYVRFFGDEDVSSKPDNDGIAAMSEEDRARSFAGAKLWKRAATVAAGPIANFLLAIAIFAVLFSVYGRMIADPVVAEVAPDGAAAAAGILPGDLLVAIDGNKVETFDDVRRYVAIRPSQKIIVTVERGGQKLDVPMVPQRTDRTDQFGNKIELGQIGIITNKEAGNFRLRTYTPLEAVREGVIESAGIVTGTFKYIANIFAGSMRADQLGGPIRVAQASGQMASLGIGAVLQLAAALSVSIGLLNLMPVPVLDGGHLMFYAVEAVRGRPLGSKAQEIAFRIGLAMILTLMVFTTWNDISVSSG
>NZ_CP007641.1|WP_039619547.1|1953707_1954538_+|phosphatidate-cytidylyltransferase
MQQELKLRIASGLILAVIVLAATWYGGLAFRILAAVIGLLIYYEWSKISGVARDWVSNAVGWIGEAAIAFLVLVGNFEFAAGMLAGVTAVGIALIILHGTSRWFPAGLFYAGATGVALAGIRGDDRPGLYAMLFIFAVVWTTDILAYFVGRALRGPKLAPSISPGKTWSGAIGGAVSAVAAGVVLVHFLVPGAEVVAAGVALILSVCSQSGDLFESFIKRKFGVKDSSRLIPGHGGVMDRVDGLIFACFSAFLLAGLFSLIKGAEMTSLGSALFGL
>NZ_CP007641.1|WP_038688674.1|1952964_1953708_+|isoprenyl-transferase
MSETVFLTVPEHVAIIMDGNGRWAKQRGLPRTMGHRKGVEAVRETVRAAGAAGIKYLTLFAFSSENWRRPEAEVSDLLGLLKAFIRRDLAELHRQNVRIRVIGDRHSLRSDILGLLLEAEETTKDNTALTLVIAFNYGSRDEISRAVVSLAKDVEAGRLRAQDITPALIDARLDTAGIPDPDLIIRTSGEERLSNFLLWQAAYSEFIFVPEYWPDFSPEIFRSALEKFASRDRRFGGLSSQAAAVGT
>NZ_CP007641.1|WP_039619546.1|1952366_1952927_+|ribosome-recycling-factor
MSEGIDIKELKRRMDGAVSAFKSDIASLRTGRASANILDPVTIEAYGSRVPLNQVANITVPEPRMLTVSVWDKSMVSAVERGIRESNLGLNPIVDGQSLRIPLPELNEERRKSLVKVAHDYAEKSKVAIRHVRRDGMDGLKKAEKDGAIGQDESRAQSERVQKMTDETISEIDRLLGEKEKEIMQV
>NZ_CP007641.1|WP_039619543.1|1951571_1952294_+|UMP-kinase
MSLEPVYKRVLLKASGEALMGAQGFGIDVAVADRIASDIAEARHMGVEVGVVVGGGNIFRGVAVASKGGDRVTGDHMGMLGTIINALALATSLRKLNIDTVVLSAISMPEICESFSQRATLYHLSMGRVVIFAGGTGNPFFTTDSAAALRAAEMGAQAIFKGTQVDGIYTADPKKYPDATRLDRLTHQEVLDRGLAVMDVAAVALARENSIPIIVFSIHEKGGFAEILTGGGLKTIVSDN
>NZ_CP007641.1|WP_009994369.1|1950548_1951475_+|elongation-factor-Ts
MSEITAAMVKELREKTGAGMMDCKKALAETNGDMEAAIDWLRAKGIAKADKKSGRTAAEGLIGVSSEGTKAVVVEVNSETDFVARNDAFQDLVRGIAKVAVSTNGSVEAVAAATYPASGKSVSDTIKDAIATIGENMNLRRSVALSVEDGVVATYIHNAVSDGLGKLGVLVALKSTGDKEALNAIGRQVAMHIAATAPLAIRPEEVDAAVAERERNVFIEQSRASGKPDNIIEKMVEGRMRKFFEEVALLSQAFVINPDLTVAAAVKEAEKAVGAPIEVAGMARLLLGEGVEKEETDFAAEVAAAVKG
>NZ_CP007641.1|WP_008526906.1|1949541_1950309_+|30S-ribosomal-protein-S2
MALPDFSMRQLLEAGVHFGHQTHRWNPKMKPYIFGDRNNIHIIDLAQTVPMLSRALQVVSDTVARGGRVLFVGTKRQASEIIADSAKRSAQYYVNSRWLGGMMTNWKTISNSIQRLRKLDEILGGEAQGFTKKERLNLEREREKLDKALGGIRDMGGTPDLMFIIDTNKEKIAIDEAKRLGIPVVAIIDSNCDPDLIDYPIPGNDDASRAIALYCELISRAAIDGIARQQSSSGRDLGASSEVPVEPALEEAAEG
>NZ_CP007641.1|WP_039619540.1|1948202_1949309_+|substrate-binding-domain-containing-protein
MALSRRAFGVGLLGAGVAGTGGYFAVRDRPELQGLLGSRTRLFGFVGGEKEAFLADPEVVRALGSYGLTMDSRVAGSVEMVREQALLSQHPQYLWPSSSIMVDIARQSGIGIRNDRVVLNTPIVVYSWQPVVDGLMKAGLVTLTSEGHHQLDLKALLDAILAGADWSKLGVNSLYGRARIVSTDPNRSNSGFMFAGLVLSLFSGNVATASDLATFGGKAQAIFRNMGFKSPSSGKLFDQYLAGGLGGEPMIVGYENQLVEWILADPARWDRINTSAGAKPVVLYPRPTVYSAHPLIVVDENANRLIEALVSPRLQELAWTRHGFRGPLGTATGNADRAIGSLLPAEVDAILPMPDAGVMLSLLSTLAN
>NZ_CP007641.1|WP_039619538.1|1947585_1948203_+|5-bromo-4-chloroindolyl-phosphate-hydrolysis-family-protein
MRNWLGNDGNWIVAGLAAAITVPLLSFAAGMPFWIAAIIALLVFVGLVFLLAPRRLFEGLDFKRIGSGRVAFARDLLEAAVPFAERLENAADAIGDKPAAAAVRHLAEIAADVFRKVEAKPESANAVRRFLSYYLPRAAEVAEGFAVIEAKRVPDPRQLGEVRGILVKLEEAFVHYADSLVDEELGTLDTDLRLIQASLKEDIGR
>NZ_CP007641.1|WP_038688684.1|1959346_1959814_+|3-hydroxyacyl-ACP-dehydratase-FabZ
MTEEATTTLSSADIIEIMKLLPHRYPFLMVDKIIEIDGDNSAIGIKNVTVNEPHFTGHFPESPIMPGVLLIEGMAQTAGAICAKKEGQPGNLVYFMTIENARFRKPVVPGDRVEFHVKKHKQRGNIWKFHCDAKVDGALVAEADIGAMIVRKDQA
>NZ_CP007641.1|WP_038688686.1|1959810_1960629_+|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase
MSTIAESARIHPMAVVEDGATIGEGVKIGPFCHVGPHVVLHENVELLAHAIVTGRTVIGKGTRIFPMAVVGGDPQSVHHAGEETTLSVGANCTIREGVTMNTGTADFGGQTIVGDNNLFLANSHVAHDCRVGNHVIMSNNVMLAGHVVIEDRVILGGGSAVHQFTRVGRQAFVGGLSAVSYDVIPYGMLNGNPGLLGGLNVVGMTRAGIDRAVIHRVRRAYKAIFEGTASVRENAAAIREEYADCAEVMQILDFIAADSDRALSSPTRGQKG
>NZ_CP007641.1|WP_038688688.1|1960632_1961514_+|LpxI-family-protein
MAFSGDTAAGRLAIIAGGGLLPSYVAEAARAAGENPVIVALKDESDRRWEGYDHAIIGIGDFAALDGLLNRYGIGRVVMSGSVRRRPEWREVRPTLRILMKVPAAIRTLLSGGDDTVLQMVIRLIEGNGRRVVGAHEIAPDLLAAVGPLGAVVPGEEDRRDTNRAAEAAETLGRLDVGQGAVSIGGRVVALEGLEGTDDMLDRVAGLRAAGRISPRRRGVLVKLCKPQQDIRADLPAIGVSTVLNAVKAGLAGIAVEAGRSLVLDRAAVIRAADEAGLFVCGIDRGLPGWGLE
>NZ_CP007641.1|WP_038688689.1|1961510_1962680_+|lipid-A-disaccharide-synthase
MTSAPLKIAVIAGEVSGDLLGADLIAALKRIHDGPVELVGVGGEGLQAEGLRSLFDFSELSIMGITQVLSRLPKLFGLIRQTTAEIIAAKPDILLIIDSPDFTHRVAKRVRTALPDLPVVNYVCPSVWAWKEYRANRMLAYVDHVLAVLPFEPATMQRLSGPATTYVGHRLTADPALLETRRLRAGRRPGSGTILLLPGSRSSEIQKLLPHFEAAVSELVSRNGPMRFILPTMRHKEGLVRELTAKWAVTPEIVVGAEAKWKAFVEADAAMAASGTVILELALADVPVVSAYKVDWIMRLLTSGIKTWTGALPNLIADYAVVPEYLNDIVRGASLARWMERLSADTLQLKAMKEGYELIWQRMQTEKPPGEHAAEILLEVLKKKKPGRF
>NZ_CP007641.1|WP_038688692.1|1962717_1964007_-|citrate-(Si)-synthase
MTDQSATIKIGDKSVDLAVKSGTIGPSVIDIGALYKNTASFTYDPGFTSTASCESKITYIDGDEGVLLHRGYPIEQLAEHGDFLEVCYLLLYGELPTAAQKKDFDYRVTHHTMVHEQMSRFFTGFRRDAHPMAVMCGCVGALSAFYHDSTDITDPHQRMVASLRMIAKMPTLAAMAYKYHIGQPFVYPKNDLDYASNFLRMCFAVPCEEYVVNPVLSRAMDRIFILHADHEQNASTSTVRLAGSSGANPFACIAAGIACLWGPAHGGANEAALNMLTEIGTVDHIPEYIARAKDKNDPFRLMGFGHRVYKNYDPRAKIMQKTTHEVLGELGIKDDPLLEVAMELERIALTDEYFIEKKLYPNIDFYSGITLKALGFPTTMFTVLFALARTVGWIAQWNEMIEDPEQRIGRPRQLYVGEPKRDYIPVSKR
>NZ_CP007641.1|WP_039619552.1|1964297_1966730_+|ComEC/Rec2-family-competence-protein
MQELTTVELRPQAGVGPADPVAFPAPAVGSRPATTQSAVPLRHRLTTAVAQLLRAAGRLLSEEADHGRLLLFSPVFLGAGAAYWFLAATDFPLLPSLLCLSVLMLAVLVAGRSRPALRATFMALALVACGMLCAQLESWRASTVILDSSVTTTVTGRVERREGDDRGRWRYVLAVTGTEAPQVKRPPRRITVIARGADAPFDLGDIITGRARLTPPAGPALPGLNDFSFGAYFDGIGANGFFYGAPEKVDVQAGPQPARSTSEALLEWLYQLRSGIGDRIRSILPGDTGAFAAALVTDERRAISKETTEALRQSGLAHIVAISGLNMALSAGIFFVGFRMLLSLVPGVAQAYPTKKIAAAGALVAVTAYFLISGFGVSAERAFIMMAIMLIAVFFDRPSISLRNVVLSALIIIAISPSEVLGPSFQMSFAATLALVSGYQLWKERRVRENPLLKLPVLRPVVAVAGFFGGVFLTSLIGGFSTALFAVEHFHRLTAYGLPANLATMPIISFIVMPAGLLAMLLMPFGLDAPLWTVVGFGLDLVIAVAKTVSGWGGDIDLGRLPAWYFAVAVAGFLLLTLLRTRLRHAGTSILAVTTLIVLILPGSRPPDLVISEDGGLVALVATAAMASNRENPPDFIFDQWQRALVLPKHHPPKVLDGPAIPPQGEDRRLRLSRDQQNEARTAMVAAAAGGEANRFSCVKKAWCIARLGNGHVVAVIDNAAYLGPACDASEIVVTAVRLRFDRCHSGATLFTGETLRRTGSVELRFAQTGLEVATAFDALSRPWMRHRAYDWRKDAFTESAPLAVSDNGE
>NZ_CP007641.1|WP_039619554.1|1966710_1967430_-|transcriptional-repressor-LexA
MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIKLPEAYSPSLQPRRGFSPSVIEGSLGKPQPVAAPAAAKPIADNGNSVSVPVMGRIAAGVPISAIQNNTHDIVVPADMLGSGEHYALEVKGDSMIDAGIFDGDTVIIRNSSTASPGDIVVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVKVQGKLVGLIRRYH
>NZ_CP007641.1|WP_039619556.1|1967625_1968522_+|VOC-family-protein
MIAHSAKPHPLDHVVLPVVNIDLARERLGKLGFTVAADARHPFGTENACVFFADKTYIEPLGVASVEESEAAARQGNVFIARNRAFRFRCGEEGLSALAFLTEDAGLDHRRFVGNGASAGEMLQFSRPMRMPDGSESVGSFKLAFSGDLRAPDFFLFTCQRINSFPADRAALEAHANGVTGIAEIALCAPEPVAFAAFVGLAVGQTAVEKTGFGMNIAASNAKISLMTPEGLEAYFELVVSSADRGLRGRAILFTVTDLAVTEAHLAANGVTYTRKNNRILVKPTPGQGALFAFEEPR
>NZ_CP007641.1|WP_009994476.1|1968518_1969364_+|3-deoxy-8-phosphooctulonate-synthase
MSTDTNSEVKIGEGEGQVTFSNTGRLSLIAGPCQMESRDHAFMVAGTLKELCAKLGIGLVYKSSFDKANRTSLSAERGIGLEKGMQVFADLKREFGFPVLTDVHTAEQCAEVAEVIDVLQIPAFLCRQTDLLIAAAKTGRVVNVKKGQFLAPWDMKNVLKKLNASGNPNVLLCERGASFGYNTLVSDMRSLPIMAAMGAPVIFDATHSVAQPGGQGESSGGQREFVETLARAAVATGIAGVFLETHQDPDNAPSDGPNMVYLKDMPRLLEKLLAFDAVAKA
>NZ_CP007641.1|WP_039619559.1|1969505_1970780_+|phosphopyruvate-hydratase
MTAITDIIAREILDSRGNPTVEVDVYLEDGSMGRAAVPSGASTGAHEAVELRDGGKRYLGKGVEKAVEAANTEIFDAIGGIDAENQIQIDNIMIELDGTPNKSRLGANAILGVSLAVAKAAAQASGLPLYRYVGGASASLLPVPMMNIINGGAHADNPIDFQEFMILPVGANSIAEAVRMGSEVFHTLRKELAAQGHNTNVGDEGGFAPGLKSASEALDFIVKSVEKAGYKPGEDIYLGLDCASTEFFKDGKYVLEGEGRTLESGAMAEYLAELAAKYPIISIEDGMAEDDWDGWKALTDLTGKKTQLVGDDLFVTNSARLRDGIRMGVANSILVKVNQIGSLTETLDAVNTAHKAAYTAVMSHRSGETEDSTIADLAVATNCGQIKTGSLSRSDRLAKYNQLIRIEEGLGPQAQYAGRSIIRG

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Crispr_ID: NZ_CP007641_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007641_2

1959123-1959199

Orphan

Consensus_repeat	Method
GATCGGCAACGGCGTGCAGATCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007641_2

>merge|NZ_CP007641|2|1959123-1959199|CRISPRCasFinder
GATCGGCAACGGCGTGCAGATCGGCGGCCAGGCTGGCATCAAGGGCCACGTGACGATCGGCGACGGCGTGCAGATCG

>NZ_CP007641|2|2|1959123-1959199|CRISPRCasFinder
GATCGGCAACGGCGTGCAGATCG	GCGGCCAGGCTGGCATCAAGGGCCACGTGAC
GATCGGCGACGGCGTGCAGATCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007641.1\|WP_038688684.1\|1959346_1959814_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NZ_CP007641.1\|WP_038688689.1\|1961510_1962680_+\|lipid-A-disaccharide-synthase	unknown	unknown	gnl\|CDD\|234580
NZ_CP007641.1\|WP_038688680.1\|1955896_1958236_+\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|274514
NZ_CP007641.1\|WP_039619559.1\|1969505_1970780_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP007641.1\|WP_009994476.1\|1968518_1969364_+\|3-deoxy-8-phosphooctulonate-synthase	unknown	unknown	gnl\|CDD\|235363
NZ_CP007641.1\|WP_039619547.1\|1953707_1954538_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NZ_CP007641.1\|WP_038688686.1\|1959810_1960629_+\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	unknown	unknown	gnl\|CDD\|235390
NZ_CP007641.1\|WP_008526906.1\|1949541_1950309_+\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|183428
NZ_CP007641.1\|WP_039619540.1\|1948202_1949309_+\|substrate-binding-domain-containing-protein	unknown	unknown	unknown
NZ_CP007641.1\|WP_009994369.1\|1950548_1951475_+\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
NZ_CP007641.1\|WP_039619554.1\|1966710_1967430_-\|transcriptional-repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NZ_CP007641.1\|WP_038688678.1\|1954575_1955700_+\|RIP-metalloprotease-RseP	unknown	unknown	gnl\|CDD\|223821
NZ_CP007641.1\|WP_039619543.1\|1951571_1952294_+\|UMP-kinase	unknown	unknown	gnl\|CDD\|239787
NZ_CP007641.1\|WP_039619552.1\|1964297_1966730_+\|ComEC/Rec2-family-competence-protein	unknown	unknown	gnl\|CDD\|377126
NZ_CP007641.1\|WP_039619538.1\|1947585_1948203_+\|5-bromo-4-chloroindolyl-phosphate-hydrolysis-family-protein	unknown	unknown	gnl\|CDD\|378398
NZ_CP007641.1\|WP_039619546.1\|1952366_1952927_+\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_CP007641.1\|WP_039619556.1\|1967625_1968522_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203
NZ_CP007641.1\|WP_038688692.1\|1962717_1964007_-\|citrate-(Si)-synthase	unknown	unknown	gnl\|CDD\|180164
NZ_CP007641.1\|WP_038688674.1\|1952964_1953708_+\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|237829
NZ_CP007641.1\|WP_038688688.1\|1960632_1961514_+\|LpxI-family-protein	unknown	unknown	gnl\|CDD\|226025

Protein	Function_ID	Function_description	E-value
NZ_CP007641.1\|WP_038688684.1\|1959346_1959814_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	7.58043e-92
NZ_CP007641.1\|WP_038688689.1\|1961510_1962680_+\|lipid-A-disaccharide-synthase	gnl\|CDD\|234580	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed.	1.4958e-169
NZ_CP007641.1\|WP_038688680.1\|1955896_1958236_+\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|274514	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP007641.1\|WP_039619559.1\|1969505_1970780_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP007641.1\|WP_009994476.1\|1968518_1969364_+\|3-deoxy-8-phosphooctulonate-synthase	gnl\|CDD\|235363	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional.	0
NZ_CP007641.1\|WP_039619547.1\|1953707_1954538_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	7.46585e-48
NZ_CP007641.1\|WP_038688674.1\|1952964_1953708_+\|isoprenyl-transferase	gnl\|CDD\|237829	PRK14834, PRK14834, isoprenyl transferase.	4.67668e-136
NZ_CP007641.1\|WP_008526906.1\|1949541_1950309_+\|30S-ribosomal-protein-S2	gnl\|CDD\|183428	PRK12311, rpsB, 30S ribosomal protein S2.	1.19783e-166
NZ_CP007641.1\|WP_039619552.1\|1964297_1966730_+\|ComEC/Rec2-family-competence-protein	gnl\|CDD\|377126	pfam03772, Competence, Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.	2.2817e-51
NZ_CP007641.1\|WP_009994369.1\|1950548_1951475_+\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	3.41252e-144
NZ_CP007641.1\|WP_039619554.1\|1966710_1967430_-\|transcriptional-repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	1.07185e-116
NZ_CP007641.1\|WP_038688678.1\|1954575_1955700_+\|RIP-metalloprotease-RseP	gnl\|CDD\|223821	COG0750, COG0750, Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane].	2.82568e-83
NZ_CP007641.1\|WP_039619543.1\|1951571_1952294_+\|UMP-kinase	gnl\|CDD\|239787	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).	1.36326e-128
NZ_CP007641.1\|WP_039619556.1\|1967625_1968522_+\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.50134e-25
NZ_CP007641.1\|WP_039619538.1\|1947585_1948203_+\|5-bromo-4-chloroindolyl-phosphate-hydrolysis-family-protein	gnl\|CDD\|378398	pfam10112, Halogen_Hydrol, 5-bromo-4-chloroindolyl phosphate hydrolysis protein. Members of this family of prokaryotic proteins mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.	6.51959e-19
NZ_CP007641.1\|WP_039619546.1\|1952366_1952927_+\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	2.18294e-101
NZ_CP007641.1\|WP_038688692.1\|1962717_1964007_-\|citrate-(Si)-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
NZ_CP007641.1\|WP_038688686.1\|1959810_1960629_+\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	gnl\|CDD\|235390	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase.	7.66743e-143
NZ_CP007641.1\|WP_038688688.1\|1960632_1961514_+\|LpxI-family-protein	gnl\|CDD\|226025	COG3494, COG3494, Uncharacterized protein conserved in bacteria [Function unknown].	1.19221e-109

>NZ_CP007641.1|WP_038688680.1|1955896_1958236_+|outer-membrane-protein-assembly-factor-BamA
MKAGSKFLNAVSAVALSASVVASGAGALTFVSATAAEAAVIQRIDVRGASRVGAEAVRSNLTITPGKSFSNTDIDDSVKQLYGTGYFSDVKISVSGGTLVVNVQEAQLVNQVVFNGNRKIKDDKLATIVQTHAAGPYSDTQIQADIQAIKEAYAATGRSEVEVTTQVVPLGEGRVNLAFVINEGDRTKIDAINFVGNNAYSAGRLAAVINTKRSNFLSFLTRKDVYNEDKLHADEEALRQFYYNRGYADMRIVSSDASFDEATNKYTLTFNIEEGQRYDFGPVTVQSTVEGVGSDQLLPLVRTKEGHVYSAKEVQKSIEAISDQVASAGYPFARVTPRGNRDLNNNTIGVEYLVDQGERAYVERIEIRGNSRTRDYVIRREFDMSEGDAFNQQMITKAKRRLEALGYFSSVNISTQPGSSPDRVVVVVDVQDQSTGSFGVGAGYAAGGDGLLLEASIEEKNFLGRGQYIRISAGGGQEGSRAYGVSFTEPYFLGYRLAAGFDVNHSETSSNDNYDYEETSVVLRVTAPITEDLATTFRYNYKQMKYDADNGDLSDLSAPYQHLVEDSPWTRSSISQTLTYNTLDDTVLPREGIYATATQEIAGLGGDSQFYKIYGKARYYHLLADDADIIGSVSASAGYVVGFGEHLNVFDQFTLTNGDIRGFENKGIGPRVAGTNDDPLGGTTYFTASAEATFPMPGFPRDFNLRGAVFADAGTLFGNDVDLRGDGIEGEDASLRASVGVGVVWQSPFGSLRLDYAIPVLKEDFDKTQNFKFGINNQF
>NZ_CP007641.1|WP_038688678.1|1954575_1955700_+|RIP-metalloprotease-RseP
MSGLYTFLMGNVVTFILVLSLLVFVHEMGHYLVGRWSGIRILAFSVGFGPEIFGFTDRHGTRWKISAIPLGGYVRFFGDEDVSSKPDNDGIAAMSEEDRARSFAGAKLWKRAATVAAGPIANFLLAIAIFAVLFSVYGRMIADPVVAEVAPDGAAAAAGILPGDLLVAIDGNKVETFDDVRRYVAIRPSQKIIVTVERGGQKLDVPMVPQRTDRTDQFGNKIELGQIGIITNKEAGNFRLRTYTPLEAVREGVIESAGIVTGTFKYIANIFAGSMRADQLGGPIRVAQASGQMASLGIGAVLQLAAALSVSIGLLNLMPVPVLDGGHLMFYAVEAVRGRPLGSKAQEIAFRIGLAMILTLMVFTTWNDISVSSG
>NZ_CP007641.1|WP_039619547.1|1953707_1954538_+|phosphatidate-cytidylyltransferase
MQQELKLRIASGLILAVIVLAATWYGGLAFRILAAVIGLLIYYEWSKISGVARDWVSNAVGWIGEAAIAFLVLVGNFEFAAGMLAGVTAVGIALIILHGTSRWFPAGLFYAGATGVALAGIRGDDRPGLYAMLFIFAVVWTTDILAYFVGRALRGPKLAPSISPGKTWSGAIGGAVSAVAAGVVLVHFLVPGAEVVAAGVALILSVCSQSGDLFESFIKRKFGVKDSSRLIPGHGGVMDRVDGLIFACFSAFLLAGLFSLIKGAEMTSLGSALFGL
>NZ_CP007641.1|WP_038688674.1|1952964_1953708_+|isoprenyl-transferase
MSETVFLTVPEHVAIIMDGNGRWAKQRGLPRTMGHRKGVEAVRETVRAAGAAGIKYLTLFAFSSENWRRPEAEVSDLLGLLKAFIRRDLAELHRQNVRIRVIGDRHSLRSDILGLLLEAEETTKDNTALTLVIAFNYGSRDEISRAVVSLAKDVEAGRLRAQDITPALIDARLDTAGIPDPDLIIRTSGEERLSNFLLWQAAYSEFIFVPEYWPDFSPEIFRSALEKFASRDRRFGGLSSQAAAVGT
>NZ_CP007641.1|WP_039619546.1|1952366_1952927_+|ribosome-recycling-factor
MSEGIDIKELKRRMDGAVSAFKSDIASLRTGRASANILDPVTIEAYGSRVPLNQVANITVPEPRMLTVSVWDKSMVSAVERGIRESNLGLNPIVDGQSLRIPLPELNEERRKSLVKVAHDYAEKSKVAIRHVRRDGMDGLKKAEKDGAIGQDESRAQSERVQKMTDETISEIDRLLGEKEKEIMQV
>NZ_CP007641.1|WP_039619543.1|1951571_1952294_+|UMP-kinase
MSLEPVYKRVLLKASGEALMGAQGFGIDVAVADRIASDIAEARHMGVEVGVVVGGGNIFRGVAVASKGGDRVTGDHMGMLGTIINALALATSLRKLNIDTVVLSAISMPEICESFSQRATLYHLSMGRVVIFAGGTGNPFFTTDSAAALRAAEMGAQAIFKGTQVDGIYTADPKKYPDATRLDRLTHQEVLDRGLAVMDVAAVALARENSIPIIVFSIHEKGGFAEILTGGGLKTIVSDN
>NZ_CP007641.1|WP_009994369.1|1950548_1951475_+|elongation-factor-Ts
MSEITAAMVKELREKTGAGMMDCKKALAETNGDMEAAIDWLRAKGIAKADKKSGRTAAEGLIGVSSEGTKAVVVEVNSETDFVARNDAFQDLVRGIAKVAVSTNGSVEAVAAATYPASGKSVSDTIKDAIATIGENMNLRRSVALSVEDGVVATYIHNAVSDGLGKLGVLVALKSTGDKEALNAIGRQVAMHIAATAPLAIRPEEVDAAVAERERNVFIEQSRASGKPDNIIEKMVEGRMRKFFEEVALLSQAFVINPDLTVAAAVKEAEKAVGAPIEVAGMARLLLGEGVEKEETDFAAEVAAAVKG
>NZ_CP007641.1|WP_008526906.1|1949541_1950309_+|30S-ribosomal-protein-S2
MALPDFSMRQLLEAGVHFGHQTHRWNPKMKPYIFGDRNNIHIIDLAQTVPMLSRALQVVSDTVARGGRVLFVGTKRQASEIIADSAKRSAQYYVNSRWLGGMMTNWKTISNSIQRLRKLDEILGGEAQGFTKKERLNLEREREKLDKALGGIRDMGGTPDLMFIIDTNKEKIAIDEAKRLGIPVVAIIDSNCDPDLIDYPIPGNDDASRAIALYCELISRAAIDGIARQQSSSGRDLGASSEVPVEPALEEAAEG
>NZ_CP007641.1|WP_039619540.1|1948202_1949309_+|substrate-binding-domain-containing-protein
MALSRRAFGVGLLGAGVAGTGGYFAVRDRPELQGLLGSRTRLFGFVGGEKEAFLADPEVVRALGSYGLTMDSRVAGSVEMVREQALLSQHPQYLWPSSSIMVDIARQSGIGIRNDRVVLNTPIVVYSWQPVVDGLMKAGLVTLTSEGHHQLDLKALLDAILAGADWSKLGVNSLYGRARIVSTDPNRSNSGFMFAGLVLSLFSGNVATASDLATFGGKAQAIFRNMGFKSPSSGKLFDQYLAGGLGGEPMIVGYENQLVEWILADPARWDRINTSAGAKPVVLYPRPTVYSAHPLIVVDENANRLIEALVSPRLQELAWTRHGFRGPLGTATGNADRAIGSLLPAEVDAILPMPDAGVMLSLLSTLAN
>NZ_CP007641.1|WP_039619538.1|1947585_1948203_+|5-bromo-4-chloroindolyl-phosphate-hydrolysis-family-protein
MRNWLGNDGNWIVAGLAAAITVPLLSFAAGMPFWIAAIIALLVFVGLVFLLAPRRLFEGLDFKRIGSGRVAFARDLLEAAVPFAERLENAADAIGDKPAAAAVRHLAEIAADVFRKVEAKPESANAVRRFLSYYLPRAAEVAEGFAVIEAKRVPDPRQLGEVRGILVKLEEAFVHYADSLVDEELGTLDTDLRLIQASLKEDIGR
>NZ_CP007641.1|WP_038688684.1|1959346_1959814_+|3-hydroxyacyl-ACP-dehydratase-FabZ
MTEEATTTLSSADIIEIMKLLPHRYPFLMVDKIIEIDGDNSAIGIKNVTVNEPHFTGHFPESPIMPGVLLIEGMAQTAGAICAKKEGQPGNLVYFMTIENARFRKPVVPGDRVEFHVKKHKQRGNIWKFHCDAKVDGALVAEADIGAMIVRKDQA
>NZ_CP007641.1|WP_038688686.1|1959810_1960629_+|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase
MSTIAESARIHPMAVVEDGATIGEGVKIGPFCHVGPHVVLHENVELLAHAIVTGRTVIGKGTRIFPMAVVGGDPQSVHHAGEETTLSVGANCTIREGVTMNTGTADFGGQTIVGDNNLFLANSHVAHDCRVGNHVIMSNNVMLAGHVVIEDRVILGGGSAVHQFTRVGRQAFVGGLSAVSYDVIPYGMLNGNPGLLGGLNVVGMTRAGIDRAVIHRVRRAYKAIFEGTASVRENAAAIREEYADCAEVMQILDFIAADSDRALSSPTRGQKG
>NZ_CP007641.1|WP_038688688.1|1960632_1961514_+|LpxI-family-protein
MAFSGDTAAGRLAIIAGGGLLPSYVAEAARAAGENPVIVALKDESDRRWEGYDHAIIGIGDFAALDGLLNRYGIGRVVMSGSVRRRPEWREVRPTLRILMKVPAAIRTLLSGGDDTVLQMVIRLIEGNGRRVVGAHEIAPDLLAAVGPLGAVVPGEEDRRDTNRAAEAAETLGRLDVGQGAVSIGGRVVALEGLEGTDDMLDRVAGLRAAGRISPRRRGVLVKLCKPQQDIRADLPAIGVSTVLNAVKAGLAGIAVEAGRSLVLDRAAVIRAADEAGLFVCGIDRGLPGWGLE
>NZ_CP007641.1|WP_038688689.1|1961510_1962680_+|lipid-A-disaccharide-synthase
MTSAPLKIAVIAGEVSGDLLGADLIAALKRIHDGPVELVGVGGEGLQAEGLRSLFDFSELSIMGITQVLSRLPKLFGLIRQTTAEIIAAKPDILLIIDSPDFTHRVAKRVRTALPDLPVVNYVCPSVWAWKEYRANRMLAYVDHVLAVLPFEPATMQRLSGPATTYVGHRLTADPALLETRRLRAGRRPGSGTILLLPGSRSSEIQKLLPHFEAAVSELVSRNGPMRFILPTMRHKEGLVRELTAKWAVTPEIVVGAEAKWKAFVEADAAMAASGTVILELALADVPVVSAYKVDWIMRLLTSGIKTWTGALPNLIADYAVVPEYLNDIVRGASLARWMERLSADTLQLKAMKEGYELIWQRMQTEKPPGEHAAEILLEVLKKKKPGRF
>NZ_CP007641.1|WP_038688692.1|1962717_1964007_-|citrate-(Si)-synthase
MTDQSATIKIGDKSVDLAVKSGTIGPSVIDIGALYKNTASFTYDPGFTSTASCESKITYIDGDEGVLLHRGYPIEQLAEHGDFLEVCYLLLYGELPTAAQKKDFDYRVTHHTMVHEQMSRFFTGFRRDAHPMAVMCGCVGALSAFYHDSTDITDPHQRMVASLRMIAKMPTLAAMAYKYHIGQPFVYPKNDLDYASNFLRMCFAVPCEEYVVNPVLSRAMDRIFILHADHEQNASTSTVRLAGSSGANPFACIAAGIACLWGPAHGGANEAALNMLTEIGTVDHIPEYIARAKDKNDPFRLMGFGHRVYKNYDPRAKIMQKTTHEVLGELGIKDDPLLEVAMELERIALTDEYFIEKKLYPNIDFYSGITLKALGFPTTMFTVLFALARTVGWIAQWNEMIEDPEQRIGRPRQLYVGEPKRDYIPVSKR
>NZ_CP007641.1|WP_039619552.1|1964297_1966730_+|ComEC/Rec2-family-competence-protein
MQELTTVELRPQAGVGPADPVAFPAPAVGSRPATTQSAVPLRHRLTTAVAQLLRAAGRLLSEEADHGRLLLFSPVFLGAGAAYWFLAATDFPLLPSLLCLSVLMLAVLVAGRSRPALRATFMALALVACGMLCAQLESWRASTVILDSSVTTTVTGRVERREGDDRGRWRYVLAVTGTEAPQVKRPPRRITVIARGADAPFDLGDIITGRARLTPPAGPALPGLNDFSFGAYFDGIGANGFFYGAPEKVDVQAGPQPARSTSEALLEWLYQLRSGIGDRIRSILPGDTGAFAAALVTDERRAISKETTEALRQSGLAHIVAISGLNMALSAGIFFVGFRMLLSLVPGVAQAYPTKKIAAAGALVAVTAYFLISGFGVSAERAFIMMAIMLIAVFFDRPSISLRNVVLSALIIIAISPSEVLGPSFQMSFAATLALVSGYQLWKERRVRENPLLKLPVLRPVVAVAGFFGGVFLTSLIGGFSTALFAVEHFHRLTAYGLPANLATMPIISFIVMPAGLLAMLLMPFGLDAPLWTVVGFGLDLVIAVAKTVSGWGGDIDLGRLPAWYFAVAVAGFLLLTLLRTRLRHAGTSILAVTTLIVLILPGSRPPDLVISEDGGLVALVATAAMASNRENPPDFIFDQWQRALVLPKHHPPKVLDGPAIPPQGEDRRLRLSRDQQNEARTAMVAAAAGGEANRFSCVKKAWCIARLGNGHVVAVIDNAAYLGPACDASEIVVTAVRLRFDRCHSGATLFTGETLRRTGSVELRFAQTGLEVATAFDALSRPWMRHRAYDWRKDAFTESAPLAVSDNGE
>NZ_CP007641.1|WP_039619554.1|1966710_1967430_-|transcriptional-repressor-LexA
MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIKLPEAYSPSLQPRRGFSPSVIEGSLGKPQPVAAPAAAKPIADNGNSVSVPVMGRIAAGVPISAIQNNTHDIVVPADMLGSGEHYALEVKGDSMIDAGIFDGDTVIIRNSSTASPGDIVVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVKVQGKLVGLIRRYH
>NZ_CP007641.1|WP_039619556.1|1967625_1968522_+|VOC-family-protein
MIAHSAKPHPLDHVVLPVVNIDLARERLGKLGFTVAADARHPFGTENACVFFADKTYIEPLGVASVEESEAAARQGNVFIARNRAFRFRCGEEGLSALAFLTEDAGLDHRRFVGNGASAGEMLQFSRPMRMPDGSESVGSFKLAFSGDLRAPDFFLFTCQRINSFPADRAALEAHANGVTGIAEIALCAPEPVAFAAFVGLAVGQTAVEKTGFGMNIAASNAKISLMTPEGLEAYFELVVSSADRGLRGRAILFTVTDLAVTEAHLAANGVTYTRKNNRILVKPTPGQGALFAFEEPR
>NZ_CP007641.1|WP_009994476.1|1968518_1969364_+|3-deoxy-8-phosphooctulonate-synthase
MSTDTNSEVKIGEGEGQVTFSNTGRLSLIAGPCQMESRDHAFMVAGTLKELCAKLGIGLVYKSSFDKANRTSLSAERGIGLEKGMQVFADLKREFGFPVLTDVHTAEQCAEVAEVIDVLQIPAFLCRQTDLLIAAAKTGRVVNVKKGQFLAPWDMKNVLKKLNASGNPNVLLCERGASFGYNTLVSDMRSLPIMAAMGAPVIFDATHSVAQPGGQGESSGGQREFVETLARAAVATGIAGVFLETHQDPDNAPSDGPNMVYLKDMPRLLEKLLAFDAVAKA
>NZ_CP007641.1|WP_039619559.1|1969505_1970780_+|phosphopyruvate-hydratase
MTAITDIIAREILDSRGNPTVEVDVYLEDGSMGRAAVPSGASTGAHEAVELRDGGKRYLGKGVEKAVEAANTEIFDAIGGIDAENQIQIDNIMIELDGTPNKSRLGANAILGVSLAVAKAAAQASGLPLYRYVGGASASLLPVPMMNIINGGAHADNPIDFQEFMILPVGANSIAEAVRMGSEVFHTLRKELAAQGHNTNVGDEGGFAPGLKSASEALDFIVKSVEKAGYKPGEDIYLGLDCASTEFFKDGKYVLEGEGRTLESGAMAEYLAELAAKYPIISIEDGMAEDDWDGWKALTDLTGKKTQLVGDDLFVTNSARLRDGIRMGVANSILVKVNQIGSLTETLDAVNTAHKAAYTAVMSHRSGETEDSTIADLAVATNCGQIKTGSLSRSDRLAKYNQLIRIEEGLGPQAQYAGRSIIRG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007641_2	2.1\|1959146\|31\|NZ_CP007641\|CRISPRCasFinder	1959146-1959176	31	NZ_CP035092	Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence	350211-350241	7	0.774
NZ_CP007641_2	2.1\|1959146\|31\|NZ_CP007641\|CRISPRCasFinder	1959146-1959176	31	NC_008688	Paracoccus denitrificans PD1222 plasmid 1, complete sequence	597559-597589	7	0.774
NZ_CP007641_2	2.1\|1959146\|31\|NZ_CP007641\|CRISPRCasFinder	1959146-1959176	31	MH910042	Mycobacterium phage Scarlett, complete genome	24420-24450	7	0.774
NZ_CP007641_2	2.1\|1959146\|31\|NZ_CP007641\|CRISPRCasFinder	1959146-1959176	31	MH910038	Mycobacterium phage LeMond, complete genome	24418-24448	7	0.774
NZ_CP007641_2	2.1\|1959146\|31\|NZ_CP007641\|CRISPRCasFinder	1959146-1959176	31	MH910039	Mycobacterium phage Oscar, complete genome	24419-24449	7	0.774
NZ_CP007641_2	2.1\|1959146\|31\|NZ_CP007641\|CRISPRCasFinder	1959146-1959176	31	MK376955	Mycobacterium phage KiSi, complete genome	24347-24377	7	0.774
NZ_CP007641_2	2.1\|1959146\|31\|NZ_CP007641\|CRISPRCasFinder	1959146-1959176	31	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	1056711-1056741	8	0.742
NZ_CP007641_2	2.1\|1959146\|31\|NZ_CP007641\|CRISPRCasFinder	1959146-1959176	31	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	1406014-1406044	8	0.742
NZ_CP007641_2	2.1\|1959146\|31\|NZ_CP007641\|CRISPRCasFinder	1959146-1959176	31	NZ_LN831788	Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE1, complete sequence	59724-59754	9	0.71
NZ_CP007641_2	2.1\|1959146\|31\|NZ_CP007641\|CRISPRCasFinder	1959146-1959176	31	NZ_CP046611	Burkholderia contaminans strain XL73 plasmid unnamed2, complete sequence	7594-7624	9	0.71
NZ_CP007641_2	2.1\|1959146\|31\|NZ_CP007641\|CRISPRCasFinder	1959146-1959176	31	NZ_AP018921	Pseudonocardia autotrophica strain NBRC 12743 plasmid pPA12743CP, complete sequence	37526-37556	10	0.677

1. spacer 2.1|1959146|31|NZ_CP007641|CRISPRCasFinder matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

gcggccaggctggcatcaagggccacgtgac	CRISPR spacer
gaggccaggcgggcagcaagggccacggcct	Protospacer
* ******** **** ***********   .

2. spacer 2.1|1959146|31|NZ_CP007641|CRISPRCasFinder matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.774

gcggccaggctggcatcaagggccacgtgac	CRISPR spacer
gaggccaggcgggcagcaagggccacggcct	Protospacer
* ******** **** ***********   .

3. spacer 2.1|1959146|31|NZ_CP007641|CRISPRCasFinder matches to MH910042 (Mycobacterium phage Scarlett, complete genome) position: , mismatch: 7, identity: 0.774

gcggccaggctggcatcaagggccacgtgac	CRISPR spacer
tcgagtcggctggcagcaagggcctcgtgac	Protospacer
 **. . ******** ******** ******

4. spacer 2.1|1959146|31|NZ_CP007641|CRISPRCasFinder matches to MH910038 (Mycobacterium phage LeMond, complete genome) position: , mismatch: 7, identity: 0.774

gcggccaggctggcatcaagggccacgtgac	CRISPR spacer
tcgagtcggctggcagcaagggcctcgtgac	Protospacer
 **. . ******** ******** ******

5. spacer 2.1|1959146|31|NZ_CP007641|CRISPRCasFinder matches to MH910039 (Mycobacterium phage Oscar, complete genome) position: , mismatch: 7, identity: 0.774

gcggccaggctggcatcaagggccacgtgac	CRISPR spacer
tcgagtcggctggcagcaagggcctcgtgac	Protospacer
 **. . ******** ******** ******

6. spacer 2.1|1959146|31|NZ_CP007641|CRISPRCasFinder matches to MK376955 (Mycobacterium phage KiSi, complete genome) position: , mismatch: 7, identity: 0.774

gcggccaggctggcatcaagggccacgtgac	CRISPR spacer
tcgagtcggctggcagcaagggcctcgtgac	Protospacer
 **. . ******** ******** ******

7. spacer 2.1|1959146|31|NZ_CP007641|CRISPRCasFinder matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 8, identity: 0.742

gcggccaggctggcatcaagggccacgtgac	CRISPR spacer
agggccaggctggcagcaagggcccggacgc	Protospacer
. ************* ********  *  .*

8. spacer 2.1|1959146|31|NZ_CP007641|CRISPRCasFinder matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 8, identity: 0.742

gcggccaggctggcatcaagggccacgtgac	CRISPR spacer
agggccaggctggcagcaagggcccggacgc	Protospacer
. ************* ********  *  .*

9. spacer 2.1|1959146|31|NZ_CP007641|CRISPRCasFinder matches to NZ_LN831788 (Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE1, complete sequence) position: , mismatch: 9, identity: 0.71

gcggccaggctggcatcaagggccacgtgac	CRISPR spacer
tccaccaggccggcatcaacggccacgacga	Protospacer
 * .******.******** *******  .

10. spacer 2.1|1959146|31|NZ_CP007641|CRISPRCasFinder matches to NZ_CP046611 (Burkholderia contaminans strain XL73 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.71

gcggccaggctggcatcaagggccacgtgac	CRISPR spacer
tcgtccaggctggcaccaagggccgaaagca	Protospacer
 ** ***********.********. . *

11. spacer 2.1|1959146|31|NZ_CP007641|CRISPRCasFinder matches to NZ_AP018921 (Pseudonocardia autotrophica strain NBRC 12743 plasmid pPA12743CP, complete sequence) position: , mismatch: 10, identity: 0.677

gcggccaggctggcatcaagggccacgtgac	CRISPR spacer
atccgcaggatggcatcgagggccacgtctg	Protospacer
..   **** *******.**********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1527665 : 1536848

Aeromonas_phage(14.29%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038688083.1\|1527665_1528964_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	3.2e-97	50.8
WP_003547190.1\|1528973_1529450_+	transcriptional repressor NrdR	NA	NA	NA	NA
WP_039618982.1\|1529453_1530803_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	8.0e-35	38.0
WP_039618985.1\|1530802_1531414_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	2.6e-17	35.4
WP_039618987.1\|1531456_1532326_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	1.9e-93	58.8
WP_039618989.1\|1532335_1533223_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_039618991.1\|1533229_1534282_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.7e-96	52.2
WP_039618993.1\|1534288_1534867_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A218MN57	uncultured_virus	2.4e-33	45.6
WP_039618995.1\|1534856_1536848_-	hypothetical protein	A0A0G2Y9S0	Acanthamoeba_polyphaga_mimivirus	8.8e-06	26.9

DBSCAN-SWA_2

1848567 : 1861626

uncultured_Mediterranean_phage(90.91%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039623210.1\|1848567_1849581_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	1.8e-23	41.9
WP_039619377.1\|1849599_1850457_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.7e-33	36.7
WP_039619379.1\|1850453_1851158_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	7.3e-40	47.6
WP_038688487.1\|1851340_1851532_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	6.8e-09	72.1
WP_038688490.1\|1851583_1852201_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_038688492.1\|1852197_1853025_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.1e-42	42.8
WP_039619381.1\|1853124_1854408_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.7e-99	45.6
WP_039619383.1\|1854412_1855186_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.0e-22	29.8
WP_039619385.1\|1855182_1855836_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	7.6e-15	35.1
WP_039619388.1\|1855974_1857564_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV24	Clostridium_phage	1.1e-11	29.2
WP_039619390.1\|1857618_1858491_-	ATP-binding protein	NA	NA	NA	NA
WP_004678848.1\|1858693_1859041_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	4.1e-12	39.1
WP_039619393.1\|1859085_1861626_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	2.8e-57	49.4

DBSCAN-SWA_3

2111018 : 2121182

uncultured_Mediterranean_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039619719.1\|2111018_2113940_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	62.1
WP_039619720.1\|2114223_2114739_+	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	1.2e-44	72.9
WP_038688903.1\|2114824_2115472_-	MarC family protein	NA	NA	NA	NA
WP_038688905.1\|2115709_2118532_+	DNA gyrase subunit A	A0A1B1IVS2	uncultured_Mediterranean_phage	6.7e-76	41.9
WP_003539654.1\|2118852_2119008_-	hypothetical protein	NA	NA	NA	NA
WP_039619721.1\|2119139_2119430_-	hypothetical protein	NA	NA	NA	NA
WP_038688909.1\|2119520_2120015_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.3e-24	37.2
WP_039619722.1\|2120071_2120644_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	3.7e-42	52.6
WP_004671916.1\|2120672_2121182_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.2e-44	58.8

DBSCAN-SWA_4

4157824 : 4168063

Mycobacterium_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039622404.1\|4157824_4158535_+	7-cyano-7-deazaguanine synthase QueC	A0A2P1JXV3	Rhodococcus_phage	6.7e-49	47.8
WP_038691505.1\|4158534_4158891_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_039622407.1\|4158887_4159616_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	2.1e-42	39.4
WP_039622409.1\|4159628_4160852_-	adenylate/guanylate cyclase domain-containing protein	M1HLN3	Pelagibacter_phage	7.0e-14	28.8
WP_039622411.1\|4160953_4161928_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	1.0e-140	76.0
WP_039622413.1\|4162103_4164281_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	1.0e-212	52.1
WP_039622416.1\|4164259_4164664_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	1.1e-16	45.7
WP_003582512.1\|4164676_4164898_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	3.6e-17	53.4
WP_039622418.1\|4165819_4168063_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.8e-124	36.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP007643

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

75060 : 121144

Lactococcus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016737360.1\|75060_76029_-\|transposase	IS481-like element ISRel2 family transposase	NA	NA	NA	NA
WP_004672573.1\|76622_77516_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	6.0e-31	34.9
WP_080771780.1\|77512_78988_-\|transposase	IS21-like element ISRel5 family transposase	NA	NA	NA	NA
WP_004672578.1\|82434_82644_-	hypothetical protein	NA	NA	NA	NA
WP_040111706.1\|85796_88640_+	hypothetical protein	NA	NA	NA	NA
WP_040111707.1\|88945_89203_+	hypothetical protein	NA	NA	NA	NA
WP_040111708.1\|89254_89731_+	hypothetical protein	NA	NA	NA	NA
WP_040111709.1\|89730_90546_+	type III secretion inner membrane ring lipoprotein SctJ	NA	NA	NA	NA
WP_040111710.1\|90548_91178_+	hypothetical protein	NA	NA	NA	NA
WP_040111711.1\|91174_91738_+	type III secretion system stator protein SctL	NA	NA	NA	NA
WP_040111712.1\|91730_93050_+	FliI/YscN family ATPase	NA	NA	NA	NA
WP_040111713.1\|93046_94066_+	type III secretion system cytoplasmic ring protein SctQ	NA	NA	NA	NA
WP_008534263.1\|94065_94719_+	type III secretion system export apparatus subunit SctR	NA	NA	NA	NA
WP_040111714.1\|94784_95054_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA
WP_040111715.1\|95064_95874_+	EscT/YscT/HrcT family type III secretion system export apparatus protein	NA	NA	NA	NA
WP_040111716.1\|95860_96658_+	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA
WP_040111717.1\|96719_97634_-	pectate lyase	NA	NA	NA	NA
WP_040111718.1\|97673_99608_-	FHIPEP family type III secretion protein	NA	NA	NA	NA
WP_040111719.1\|99631_100600_-	hypothetical protein	NA	NA	NA	NA
WP_194252249.1\|100688_100856_-	hypothetical protein	NA	NA	NA	NA
WP_040111720.1\|101109_101658_+	hypothetical protein	NA	NA	NA	NA
WP_040111721.1\|101667_102081_+	hypothetical protein	NA	NA	NA	NA
WP_194252263.1\|102203_102452_-	hypothetical protein	NA	NA	NA	NA
WP_052272647.1\|105036_105477_+	sce7726 family protein	NA	NA	NA	NA
WP_040111724.1\|106976_108359_+	radical SAM protein	NA	NA	NA	NA
WP_194252250.1\|109709_109928_-\|transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	6.4e-11	46.2
WP_194252251.1\|109952_111142_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	4.4e-53	44.0
WP_052272649.1\|111428_112580_-	phosphonopyruvate decarboxylase	NA	NA	NA	NA
WP_040111726.1\|112744_113653_+	phosphoenolpyruvate mutase	NA	NA	NA	NA
WP_040111727.1\|113763_114435_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_040111728.1\|114555_115431_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	7.5e-10	35.7
WP_080771751.1\|115821_116136_+\|transposase	transposase	NA	NA	NA	NA
WP_194252252.1\|116372_118685_-	hypothetical protein	NA	NA	NA	NA
WP_194252253.1\|119388_120069_-	hypothetical protein	NA	NA	NA	NA
WP_080771752.1\|120832_121144_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

289485 : 321586

Corynebacterium_phage(100.0%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008536038.1\|289485_290712_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_040111816.1\|290675_292562_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004680427.1\|292561_293065_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004680426.1\|293151_293685_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_040111817.1\|293800_295288_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_040111818.1\|295290_295845_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004680423.1\|295880_296873_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_040111821.1\|302281_303637_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_040111822.1\|303698_304865_+	FHA domain-containing protein	NA	NA	NA	NA
WP_040111823.1\|304864_306154_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_040111824.1\|306163_309769_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_040111825.1\|310065_311682_+	hypothetical protein	NA	NA	NA	NA
WP_004678812.1\|311860_312028_+	hypothetical protein	NA	NA	NA	NA
WP_004678808.1\|313234_313378_+	hypothetical protein	NA	NA	NA	NA
WP_040111826.1\|313374_314385_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_052272658.1\|317492_318824_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_040111827.1\|318935_319823_-	hypothetical protein	NA	NA	NA	NA
WP_052272659.1\|320428_321586_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.2e-92	48.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP007645

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

88584 : 148515

Bacillus_phage(20.0%)

transposase,integrase

attL 100797:100811|attR 120655:120669

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040112654.1\|88584_89553_-\|transposase	IS481-like element ISRel2 family transposase	NA	NA	NA	NA
WP_040112655.1\|89937_90609_+	hypothetical protein	NA	NA	NA	NA
WP_194252294.1\|90752_91046_-	hypothetical protein	NA	NA	NA	NA
WP_194252300.1\|91421_92084_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_040112658.1\|92987_93929_-	hypothetical protein	NA	NA	NA	NA
WP_052272698.1\|94461_96681_-	hypothetical protein	NA	NA	NA	NA
WP_080771828.1\|96718_97987_-	hypothetical protein	NA	NA	NA	NA
WP_194252295.1\|98524_101182_-	patatin-like phospholipase family protein	NA	NA	NA	NA
100797:100811	attL	NA	NA	NA	NA
WP_040112660.1\|101786_104525_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_080771810.1\|104688_107466_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_052272700.1\|107496_110046_-	N-acetylmuramoyl-L-alanine amidase	A0A142F1B8	Bacillus_phage	2.6e-10	31.5
WP_040112662.1\|110318_111215_-	hypothetical protein	NA	NA	NA	NA
WP_040112663.1\|113326_113848_+	hypothetical protein	NA	NA	NA	NA
WP_040111873.1\|115507_116368_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	3.4e-31	33.3
WP_040112664.1\|119685_120654_-\|transposase	IS481 family transposase	Q4QYC7	Simian_immunodeficiency_virus	2.8e-05	35.3
WP_040112665.1\|120873_121599_+	DUF2726 domain-containing protein	NA	NA	NA	NA
120655:120669	attR	NA	NA	NA	NA
WP_040112666.1\|121689_122559_+	hypothetical protein	NA	NA	NA	NA
WP_040112667.1\|122560_123058_+	hypothetical protein	NA	NA	NA	NA
WP_040112668.1\|123233_123500_+	DUF982 domain-containing protein	NA	NA	NA	NA
WP_040112670.1\|125958_126723_+	hypothetical protein	NA	NA	NA	NA
WP_040112671.1\|126722_128096_+	hypothetical protein	NA	NA	NA	NA
WP_194252296.1\|128122_128740_-	hypothetical protein	NA	NA	NA	NA
WP_080771812.1\|128909_130394_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_040112674.1\|130390_131311_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.4e-30	34.7
WP_040112675.1\|134204_134390_-	hypothetical protein	NA	NA	NA	NA
WP_040112676.1\|134506_134860_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_194252297.1\|134807_135260_-\|transposase	transposase	NA	NA	NA	NA
WP_040112678.1\|135491_136448_+	hypothetical protein	NA	NA	NA	NA
WP_183599947.1\|136522_137461_+	hypothetical protein	NA	NA	NA	NA
WP_040112680.1\|137457_138465_+	hypothetical protein	NA	NA	NA	NA
WP_040112681.1\|138513_138786_+	RHS repeat protein	NA	NA	NA	NA
WP_080771814.1\|138812_143540_+	peptidase C39	NA	NA	NA	NA
WP_040112682.1\|143532_143955_+	DUF4279 domain-containing protein	NA	NA	NA	NA
WP_040112683.1\|145385_146123_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_040112684.1\|146123_146567_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_040112685.1\|146563_146920_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_040112686.1\|146991_148515_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.5e-103	40.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007641

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP007643

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP007645

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection