CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP006877	Rhizobium gallicum bv. gallicum R602, complete genome	2 crisprs	WYL,csa3,cas3,c2c10_CAS-V-U3,DEDDh	2
NZ_CP006878	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602a, complete sequence	0 crisprs	NA	0
NZ_CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	0 crisprs	RT,csa3,DEDDh,WYL	0
NZ_CP006879	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence	0 crisprs	NA	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP006877_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006877_1

1702801-1702939

Orphan

Consensus_repeat	Method
TGTCGTTGTCGCTGTAAGACTTGCTGTCGTAGCTCCAGTCGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006877_1

>merge|NZ_CP006877|1|1702801-1702939|CRISPRCasFinder
TGTCGTTGTCGCTGTAAGACTTGCTGTCGTAGCTCCAGTCGTAATCGGTCTTGACGTCCGTATCAGTGATCGTGGTCGTCTTGGTGTTGGTGATGTTGTCGTTGTCGCTGTACGACTTGCTGTCGTAGCTCCAGTCGTA

>NZ_CP006877|1|1|1702801-1702939|CRISPRCasFinder
TGTCGTTGTCGCTGTAAGACTTGCTGTCGTAGCTCCAGTCGTA	ATCGGTCTTGACGTCCGTATCAGTGATCGTGGTCGTCTTGGTGTTGGTGATGT
TGTCGTTGTCGCTGTACGACTTGCTGTCGTAGCTCCAGTCGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006877.1\|WP_039844734.1\|1709978_1710944_+\|glycosyl-hydrolase-family-5	unknown	unknown	gnl\|CDD\|226609
NZ_CP006877.1\|WP_074061123.1\|1712189_1712333_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|227744
NZ_CP006877.1\|WP_039844722.1\|1690901_1691753_+\|phytoene/squalene-synthase-family-protein	unknown	unknown	gnl\|CDD\|224478
NZ_CP006877.1\|WP_039846733.1\|1704822_1705128_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006877.1\|WP_039844730.1\|1704041_1704809_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
NZ_CP006877.1\|WP_039844725.1\|1694006_1695680_-\|cellulose-biosynthesis-protein	unknown	unknown	gnl\|CDD\|379214
NZ_CP006877.1\|WP_039844728.1\|1700011_1702036_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006877.1\|WP_039844735.1\|1712344_1712581_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006877.1\|WP_039844724.1\|1692300_1693734_-\|FADH(2)-oxidizing-methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))--methyltransferase-TrmFO	unknown	unknown	gnl\|CDD\|235416
NZ_CP006877.1\|WP_039844732.1\|1706543_1707527_+\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|224012
NZ_CP006877.1\|WP_039844726.1\|1695810_1696302_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006877.1\|WP_039844723.1\|1691826_1692297_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006877.1\|WP_039844720.1\|1687977_1690509_+\|protein-translocase-subunit-SecDF	unknown	unknown	gnl\|CDD\|237805
NZ_CP006877.1\|WP_039846734.1\|1709459_1709966_+\|DUF995-domain-containing-protein	unknown	unknown	gnl\|CDD\|336337
NZ_CP006877.1\|WP_039844733.1\|1707523_1709413_+\|N-acetylglucosaminyltransferase	unknown	unknown	gnl\|CDD\|133043
NZ_CP006877.1\|WP_039846732.1\|1696387_1697731_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP006877.1\|WP_039844727.1\|1697723_1699988_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NZ_CP006877.1\|WP_039846735.1\|1711067_1712033_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006877.1\|WP_039844721.1\|1690512_1690899_+\|membrane-protein	unknown	unknown	gnl\|CDD\|226260
NZ_CP006877.1\|WP_039844731.1\|1705522_1706542_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187541

Protein	Function_ID	Function_description	E-value
NZ_CP006877.1\|WP_039844734.1\|1709978_1710944_+\|glycosyl-hydrolase-family-5	gnl\|CDD\|226609	COG4124, ManB, Beta-mannanase [Carbohydrate transport and metabolism].	1.86997e-99
NZ_CP006877.1\|WP_039844722.1\|1690901_1691753_+\|phytoene/squalene-synthase-family-protein	gnl\|CDD\|224478	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism].	5.25662e-63
NZ_CP006877.1\|WP_039844730.1\|1704041_1704809_+\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.67088e-38
NZ_CP006877.1\|WP_039844725.1\|1694006_1695680_-\|cellulose-biosynthesis-protein	gnl\|CDD\|379214	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions.	4.17965e-26
NZ_CP006877.1\|WP_039844724.1\|1692300_1693734_-\|FADH(2)-oxidizing-methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))--methyltransferase-TrmFO	gnl\|CDD\|235416	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed.	0
NZ_CP006877.1\|WP_039844732.1\|1706543_1707527_+\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|224012	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane].	1.64923e-171
NZ_CP006877.1\|WP_039844721.1\|1690512_1690899_+\|membrane-protein	gnl\|CDD\|226260	COG3737, COG3737, Uncharacterized conserved protein [Function unknown].	2.28273e-63
NZ_CP006877.1\|WP_074061123.1\|1712189_1712333_-\|DUF1127-domain-containing-protein	gnl\|CDD\|227744	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown].	1.89974e-11
NZ_CP006877.1\|WP_039844720.1\|1687977_1690509_+\|protein-translocase-subunit-SecDF	gnl\|CDD\|237805	PRK14726, PRK14726, protein translocase subunit SecDF.	0
NZ_CP006877.1\|WP_039846734.1\|1709459_1709966_+\|DUF995-domain-containing-protein	gnl\|CDD\|336337	pfam06191, DUF995, Protein of unknown function (DUF995). Family of uncharacterized Proteobacteria proteins.	1.2332e-62
NZ_CP006877.1\|WP_039846732.1\|1696387_1697731_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	1.0336e-131
NZ_CP006877.1\|WP_039844727.1\|1697723_1699988_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NZ_CP006877.1\|WP_039844733.1\|1707523_1709413_+\|N-acetylglucosaminyltransferase	gnl\|CDD\|133043	cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.	7.52724e-70
NZ_CP006877.1\|WP_039844731.1\|1705522_1706542_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187541	cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs. UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0

>NZ_CP006877.1|WP_039844728.1|1700011_1702036_-|hypothetical-protein
MHAEKISEIVAHFIGLFGAATDEARMRSNYLDGARPREADPSLSEDEAFSPAFISNLELKDYDPGVDYRSVSYDINYAEPRHFGGVFEETLKKLAEIASRDLSAPHFGANIYLPGEEEEEELEVFQGPGSVISHVAQANMLIDDDHLNMTGDQPQLRDTSFVTHRLMEFSEKADAFTPFSSYDRVDTQEGLRAIADDIHEYIQAARESSATTTESGEPQIIVLPDNHIDGISTYSYVNGQLVEEAPSIDDFMPDRGIATPPTEPEKSDVPVEQDGGSENSLDVAAGANVLANVVEITETAIISPLTAVMGNYHQIDAISQFYVYSDRDEIASVFNRDDSATTVANNIAIFERSTYDDGKPDTAEPAAETIFPTAWRVSVIEGDVSFVNWIEQYHFISDNDTMTVTTTGSEATVLTGGNAAVNLASFLGIGMQYDLIIVGGDILDMNVISQIALLYDNDWVRAEDGAPGATVQSGNNLIWNLASIHNVGANDRFEAMPDYVVQTQKAIEDRDAAMPSGLSHDGNFEGYIGLNVLYITGNLYDVNIIKQVSILGDSDDVTQAVSNILEHNQDADIKIDTGSNAVVNIAQITDYDSFGQTTYLAGQLYSDAILIQGGLVEHDTSQSQPNSDHLANEVIAFLGEDEPLGGSEDAVINAGHDLSWTLAQPADVMQTVVA
>NZ_CP006877.1|WP_039844727.1|1697723_1699988_-|type-I-secretion-system-permease/ATPase
MNHISKHTLSADRSLRFGSTGRVDETLTGACMSAIDEAVASLRKLTENRTAPAQSVSPAEPKAEKAPEPIENPAEETVPLIPLGSRAIPGPERSTEQAKAGQTVAKTTPDTPVVPLKTPGDQSEAKANPAIPFGKTIDGNRGPIRENERRQRNDGGNNGKTPDFGGGGGGGGGGASFHKRSEPVNFAVSLARGIAAVRRNMVIVMAFTIAINVLLLAIPLYLFQISDRVLTSRSIDTLVMLTVAVLGAVILQAFMDSIRRFILMRTAVELEVQLGAPILSAAARASLHSNGRDYQTLQDLQQLRSFLTSGTLIAFLDAPLMPLFVVVVYLVHPHLGLIIMTCCAVLFVIAYLNQKFTARQFAEANGYLSRANFHLDSMSRNSQIINALAMIPEAVKMWGRETAGSLKSHVSAQDRNIVFSGVSKACRMITQVALLGWGAHLSLSGEMTGGMVIAASIVSGRALAPIEGAIEGWQQFNKSASAFGRIKQLLITSPLNFPRLRLPNPEGRLDVERILFVPPPQKKVILNGISFSLKKGESLAIIGNSGSGKTTLGKMLVGSILPTSGNVRLDLMDLRNWDQRQFGESIGYLPQDVQLFPGTIKANISRMRDDVEDQQIFEAAVLADVHELIASFPQGYETIVAADGSPLSGGQKQRIALARAFFGDPRFVVLDEPNSNLDSQGEAALARALIHAKKKGITTVTITQRPALLQCVDKILLLKEGSVAMFGERTEVMEALSKNNGRQPPRIEGNDNGE
>NZ_CP006877.1|WP_039846732.1|1696387_1697731_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MSRKPQPAGNPIEWYSEVPRSIRYHSIIGLGVLFASFGGFGFWAATAPLASAIIAQGSFVATGNNKIVQHLEGGIIKEMSVSEGDVVKEGDVLVTLDPTAALSNERMLKLRRLRLEAVVARLRAEAQGARHFKIPDIVMAEASDPDVNAIIQSQNVVFHSKQIKLEEQLNLIEKNIKSLEYRFKGYDGQRQAFERQLSLLTEERDSKARLVKVGYMRRTDLLAIERAMADALGDISRLTGELNESEAEVAKFRQEAVIAVNSNKQAALDALETAESELDSVREQVREAAGVLERTVIRSPVSGTVVRSYYHTAGGVITTGKPIMEILPAHVPLIIEAQVLRTSIDQLHEGQTAAIRLSALNRRTTPVLNGNVFYVSADSIEENAGQQVKDVYIVRVQISDDEISRVHGFHPVPGMPADVLIQTSERTFFEYLTKPITDSMSRAFKER
>NZ_CP006877.1|WP_039844726.1|1695810_1696302_-|hypothetical-protein
MAAMSDVLLRVGRLNYVWTNTESLLIYIIAHLLKIQKDAAIVVFLTLNTTRARIDLVERLAKLHSTPAADRKAVLHAMSRMKKESKMRNKYNHCIYSFDDKGQISGTQLMRFVEDDKEISYGKVEQLDEKEIAALEKSIAEIVSISQSLWSFINASSHVSGEL
>NZ_CP006877.1|WP_039844725.1|1694006_1695680_-|cellulose-biosynthesis-protein
MRIDVIDTEAGFEAVRDDWDRVYMDDPHAQHFLSWIWLKSYLFHRKRWFILALREREDRSPYVAFFPLRVTTQHDKKTGAFFDEIIMAGNFSADYTGFIAQPDYEQHAIAGFAAYLKRQNWTHLKLEYFSGPPQRREALVGALQGPEVMFRDSSPQNPENIDNCICPVVTLPPSFDDYLEQKMSSQTRQKLRRFLRKVESDDDYRITMATPETIDRDLDILFELWRTKWIGRKGKERTERLIGATRQLLMDSFKDGNLDVPVMWYGDRPLGALANIVDRQKKSILFYITGRDETWKTPSPGLILHGYCIRRAIADGFKTYDFLRGNEPYKYMFGPDERRISCTLFRTRSGRNLGDVIHPRSIPFVYDQALQMYRDGAKAFAEAAFRQLLETVPSHMGAQFGLASLMFEKGKLHEAEAGFTALVGRIDDPVPVYLRLGDTQLALGSYEEAARTFGRIVERSPYDAQAHYKQGVALAAAGRQPEAARVFAMVEQYSYDNPVQRKFAEKSREALRRIVSETEQAAAALVAASKPQKTSRRNQTGRVSAKFECGATELVPA
>NZ_CP006877.1|WP_039844724.1|1692300_1693734_-|FADH(2)-oxidizing-methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))--methyltransferase-TrmFO
MNKTSSYSPIHVVGGGLAGSEAAWQIANAGVPVVLHEMRGVRGTDAHKTDGLAELVCSNSFRSDDATSNAVGVIHAEMRMAGSLIMACADKHQVPAGGALAVDREAFSDAVTKVINGHPLVSVVREEVTGLPPKEWDLAIVATGPLTAPSLAAAIQEETGADALAFFDAIAPIVYRDSIDMDICWYQSRYDKVGPGGTGKDYINCPMDEEQYNAFVDALIAGDTVGFKEWEGTPYFDGCLPIEVMAERGRETLRHGPMKPMGLTNAHNPSVKAYAVVQLRQDNALGTLYNMVGFQTKLKYGAQAEIFRMIPGLQNAEFARLGGLHRNTYINSPTLLDPSLTLKSRPGLRFAGQITGCEGYVESASVGLMAGRFAAAERKGEAVLLPPATTALGSLLGHITGGHLVTDEEPGKRSFQPMNINFGLFPDLQPGSIVKPEGVKRFRGKDKTILKRQLIAKRALADCAAWLGQSAPFAESA
>NZ_CP006877.1|WP_039844723.1|1691826_1692297_+|hypothetical-protein
MSMIVWSVIFALVIFLAFVATRMAARNKDEEGFHDTGLAILEFNRAFPHEAIRQLQATADGQVVFVRLHDNKAGFMRNMHRHFSCHVLEPGRVRVVSSETGRGLVIDFLDHPHHNGVFEFASAKESAEVSLWLLGNYVADADLALPPTERPAANNQ
>NZ_CP006877.1|WP_039844722.1|1690901_1691753_+|phytoene/squalene-synthase-family-protein
MTDKPMSNQEICLAMLRDSDRDRYLACLLSPQDKRGALAALYAFNAELARIRDLVHEPLPGEVRMQYWRDLLEGTAHGSTEANPVAASLLSAIEAHRLPRQTLIDMIDARIFDLYDDPMETRTSLEGYAGETASALIQLASLVLSADEAAKSAEAAGHAGVAQAIAGMLLLMPLHRHRGQLYIPLEILSATGLDRDSFLAGKDKARISAAIEAFVGLGRDHLAKARAVVLPPAIFPAFLPVTLAEPMLMKAQKAGAALFDQSLQQPQWRRQLGMTLALMRKKI
>NZ_CP006877.1|WP_039844721.1|1690512_1690899_+|membrane-protein
MAKGIEIREAHFPGRAPVDTYGNGGFRFADMSHRGSILCLPSGIYGWDMDMSKALSVESFQRVLDEADDIEVLLVGTGTELRRLPPELKDALKARGISSDPMSTGAAVRTFNIMLAESRAVAAALIAV
>NZ_CP006877.1|WP_039844720.1|1687977_1690509_+|protein-translocase-subunit-SecDF
MLHLSRWKTVLIWLIVFVAALGAAPNLFTDVWLPGWMPHKRVALGLDLQGGSHIVLKAERSDIVRKRLENTVASVRGRLREAGIRYTGLAGNGQTIQVRITDPNQIDRAVSVLTPLTAAATGARDPDVTLSKGNDGQLTLQITGKAIGRSLLAALTQSVDIVGRRAVEAGGIDPVIETRGPDRLSVQVPGLADPQRFKDLSSQDGRLSFHLIDGSMSPQDAMGGTVPARSRIVYSQDDPPDAFLVERTEVLSSADLSDFQVEPGNDEESSILTFRINPESARRFAELTQKNVGRSLAILLDDQVIAAPDIGEPVAGNRGEIPLNYSQEETEDLAAILRSGALPVTLTIVEERTIDPGLGAGSIRSGLVAGFVGAVFVIGLMVAFYGILGVIAGAALVVNIMMILAVLSLSGAPLTLPGVAGIVLTIGIAVDATVLIYERIREEVKGGAHLDQAIEVGYSRAFMTVVDANITTLIAAAILFYLGSDAIRGFAVTLAIGILTTAFTAFLFTRPLVVAWVRHRRFKHLPKSVHTDLFDGTNIRFMGIRRYSFTALAALSLVSMLAVTTIGMNLGIDFTGGSVIEVRSKQGPADLEDIRSRLSQLNIGDIQARRLRDASNAIIRIEAQGGGENAEQSAITLVRSELADQYDFRRVEVVGPAVSGELTRTATLGVLASLAAILVYIWFRFEWQFAVGAIIATLHDVILTLGSFVVTGIEFNLTSIAALLVIVGYSLNDTVVVYDRMRENLKHFRKMPLPILIDASINQTLSRTILTSATTLLSLLALYLFGGEVIRSFALVMLFGVAVGTFSSIYIAAPVLILFRLRPKTFDEKEDGATDEKSGKATV
>NZ_CP006877.1|WP_039844730.1|1704041_1704809_+|DNA-binding-response-regulator
MFMTASKTGDADQSRKFGPAGDTILVIANADLFSECLAEALAKKFAGCEVVSKGYSKAMLENDANDAKLVLFYHIASPELNEALQVVRENHPSTSIGLVVEAIDMLEPYINRLVEARVIDGVLPLNLRLDVFMAAVDLLMKGGEHFPSALLNRLTGAQPEKSLYETKSVAAAGAGTLRLRQGDVTALTTREVQILDLICKGTQNKIIADELHLSENTVKVHVRNIYKKMNVRNRTEAASRFFNNEAGNASGRWRN
>NZ_CP006877.1|WP_039846733.1|1704822_1705128_-|hypothetical-protein
MRTSDAVRRTALAFGLMLIAAGPISCAAVDDDLPLASNPKPAKTVVTKVPRSSKVYSYAVASNKTAAPVSAGSKVYYGSAPWICTPSGFGQKSRCFARPAT
>NZ_CP006877.1|WP_039844731.1|1705522_1706542_+|NAD-dependent-epimerase/dehydratase-family-protein
MRSFVPNEICSGYDNLSGRTPKKVLVNGGAGFLGSHLCERLLKGGHEVICLDNFSTGRRSNVHHLRPFSRFRIIEHDVRSPFDVDAALIFNFASPASPPDYQRDPVGTLLTNVLGAVNALDLARRNGATIVQSSTSEVYGDPEHSPQRESYCGNVNPVGPRACYDEGKRSAETLFFDYHRTYGVDIRVGRIFNTYGPRMRPDDGRVVSNFIVQALQNKNITIYGDGSQTRSFCYVDDLIEGFLRFSNAGKKCTGPINLGNPAEIPVRQLAEVIREMTNSRSRIVHLPRVTDDPKQRRPDISRAQAKLGWQPRVALEVGLGRTIEYFEARLSAAKVAEAV
>NZ_CP006877.1|WP_039844732.1|1706543_1707527_+|UDP-glucose-4-epimerase-GalE
MSPYIIVTGGAGFIGSHICKTLAGAGFTPVAYDNLSTGHQDAVRWGPLIDADIADVGSLKKALGRFEPVCVIHCAANAYVGESVADPRKYYRNNVSGSLALLEACLDQQVDRIVFSSSCATYGIPAALPIREEMVQLPVNPYGRTKLIFEMALEDYAAAYGLRFVSLRYFNAAGADPQGDLAERHEPETHLIPRALLAAAHRLPCLEVFGNDYETEDGTCVRDYIHVSDLAQAHLAAVDYLASGGETLRVNLGSGHGTSVGEILSAIHRITGHEVPVHYDIRRAGDPPVLFADTARARAVLGFTPQFSDIDTIIRTASPTFGLEVRA
>NZ_CP006877.1|WP_039844733.1|1707523_1709413_+|N-acetylglucosaminyltransferase
MNVAPFVTRQRRATAPRAARQDALEPIFAGWSRAAYWFGVACWLAALAYFWTWWLQPAHVISTPAFIITTATVAWVTLIPAYFIFIFVNAKRMKPSAAVPTGRVAMVVTKVPSEPFEVVRKTLLAMLDQKGVEFDIWLADEDPAEETKRWCARHGIYISTRKGVAAYHGTEWPRRTRCKEGNLAYFYDRYGYDRYDFVAQFDADHVPEPTYLQEVMKPFADPRVGYVSAPSICDANAADSWAARGRLYAEASLHGSLQAGYNDGWAPLCIGSHYAVRTAALRQIGGLGPELAEDHSTTLMMNAGGWRGVHALDAIAHGDGPATFADLVVQEFQWSRSLVTILLQYSRTYVPKLPLKLKFQFLFSQVWYPLFSAFMALMFALPVLALLTGHVFVGVTYPDFLLHFSPLSLVLVALALFWRRSATFRPYDAKLFGWEGIAFVLLRWPWSLAGTLAALRDHVSGSFVDFRITPKGTQAQRTLPALVLLPYVLLAGISLAAMVLAPAEGAARGFYIFAGINAVIYAALTMLIVAHHARENGLPLMPRSRDLRLVAASALTLLVAGSGEIRLHGLSSLEALSHGQDIVSFTEAKFAVAGAGLGGGKTRIVKFRFKWNGFRQQAAAGSTRVEPSA
>NZ_CP006877.1|WP_039846734.1|1709459_1709966_+|DUF995-domain-containing-protein
MKIGTRTYGAAAAVLSLVLCLPGAAAGAEAKKAPMPLSAYELYQLYRDKTWTWGAGGGRFMDEGRRFVAWTNDGGKQWVAEGRWAVDDLGQMCMRATWTNEEGPARVSTCFGHRKIGRVIYQKRQPDGNWYIFRHASARAGDEYLKLVPADTVSANADAYRQKLMARR
>NZ_CP006877.1|WP_039844734.1|1709978_1710944_+|glycosyl-hydrolase-family-5
MKKLRERIVSATAIALLLSVATHPATPSLAQEAAGVPAPLSQAIVDKRPVLHADGIKFGAYDPHGDFTSQQGVATEHLFLPWEDVDLETLKAADAYAQARGRNLLISVEPWSWDVDWRLTSDELRQKVLRGDYDVNMRAIAQMITKLKSPVIVRWGQEMEDQNSRFSWAGWNPRDYVTAYRRMMDIVRAEAPGVEVMWSPKGLDGLDAYYPGDDYVDLVGLSVFGLEPYDTLAYGGPRDFRQALTDGYRRVSGYGKPIWVAELGYEGRDAYMRPWIDTVTLKHSDFPKLEEVVYFNDRDVHAWPFNLGRPNWRVIKGDETN
>NZ_CP006877.1|WP_039846735.1|1711067_1712033_+|hypothetical-protein
MIHSGSVIDWLLHSDPSIRWQVMRDLIDVPEPEWAAERTKVESEGWGARLLSYQDEDGQWAGGSFVPADFDPREWKEHGQPWTATTFSLSQLREFGLNPSSDRAKRTVELIGANARWDEGGQPYWEGEVEECINGRTVADGAYFGVDVSSIVDRLVGERLDDGGWNCERLNGSVRSSFASTINVLEGLLEYERATGGTRQSQEARRSGEEYLLERNLFRRLGTGEPADERFLRFLHPNRWRYDVLRALDYFRFSAMLTGGDRDPRLGEAIGHVRSRRLENGTWPLDWSLAGRVWFEVDDGQGEPSRWVTLRAMRVLRWWES
>NZ_CP006877.1|WP_074061123.1|1712189_1712333_-|DUF1127-domain-containing-protein
MNPIRIAKSWISYRRTLNELGNLSNQTLSDIGISRYEIRNIASRSFR
>NZ_CP006877.1|WP_039844735.1|1712344_1712581_-|hypothetical-protein
MPSATGVFVCSTCTFALVAAESAFFLLRSKNGFCVFIVHHIAQMHSRCLFFALHNMTGNHYMNVNRRDGDGAAREATF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP006877_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006877_2

2552671-2552743

Orphan

Consensus_repeat	Method
AGAAAAATTTCCCGATCGGGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006877_2

>merge|NZ_CP006877|2|2552671-2552743|CRISPRCasFinder
AGAAAAATTTCCCGATCGGGAAAATAGACAGCGCTAGATGATCCTTATTCAGAAAAATTTCCTGATCGGGAAA

>NZ_CP006877|2|2|2552671-2552743|CRISPRCasFinder
AGAAAAATTTCCCGATCGGGAAA	ATAGACAGCGCTAGATGATCCTTATTC
AGAAAAATTTCCTGATCGGGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006877.1\|WP_082046538.1\|2558678_2559059_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377558
NZ_CP006877.1\|WP_039845408.1\|2549474_2549771_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006877.1\|WP_039845405.1\|2546454_2547201_-\|SIMPL-domain-containing-protein	unknown	unknown	gnl\|CDD\|225516
NZ_CP006877.1\|WP_039845410.1\|2550842_2551091_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006877.1\|WP_039845409.1\|2550490_2550775_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006877.1\|WP_039845403.1\|2545330_2545732_-\|DUF4174-domain-containing-protein	unknown	unknown	gnl\|CDD\|379363
NZ_CP006877.1\|WP_039846839.1\|2561269_2562046_-\|3-ketoacyl-ACP-reductase	unknown	unknown	gnl\|CDD\|237188
NZ_CP006877.1\|WP_039845407.1\|2548416_2549028_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006877.1\|WP_039845404.1\|2545830_2546214_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006877.1\|WP_039845420.1\|2565092_2565866_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|223955
NZ_CP006877.1\|WP_039845418.1\|2562045_2563551_-\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_CP006877.1\|WP_039845417.1\|2559599_2561255_-\|alanine-phosphoribitol-ligase	unknown	unknown	gnl\|CDD\|235000
NZ_CP006877.1\|WP_039845413.1\|2553407_2555576_-\|cellulose-synthase	unknown	unknown	gnl\|CDD\|274400
NZ_CP006877.1\|WP_082046537.1\|2547988_2548501_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006877.1\|WP_039845411.1\|2551132_2552395_-\|type-II-toxin-antitoxin-system-HipA-family-toxin	unknown	unknown	gnl\|CDD\|341492
NZ_CP006877.1\|WP_039845414.1\|2556897_2558283_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274787
NZ_CP006877.1\|WP_039845416.1\|2559261_2559489_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006877.1\|WP_039845412.1\|2552391_2552622_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|213767
NZ_CP006877.1\|WP_052451551.1\|2555560_2556865_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006877.1\|WP_039845419.1\|2563584_2565093_-\|sorbosone-dehydrogenase	unknown	unknown	gnl\|CDD\|143436

Protein	Function_ID	Function_description	E-value
NZ_CP006877.1\|WP_082046538.1\|2558678_2559059_+\|hypothetical-protein	gnl\|CDD\|377558	pfam05818, TraT, Enterobacterial TraT complement resistance protein. The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between an Escherichia coli and its surroundings.	0.000612812
NZ_CP006877.1\|WP_039845420.1\|2565092_2565866_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|223955	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism].	3.30476e-72
NZ_CP006877.1\|WP_039845405.1\|2546454_2547201_-\|SIMPL-domain-containing-protein	gnl\|CDD\|225516	COG2968, COG2968, Uncharacterized conserved protein [Function unknown].	4.76402e-80
NZ_CP006877.1\|WP_039845403.1\|2545330_2545732_-\|DUF4174-domain-containing-protein	gnl\|CDD\|379363	pfam13778, DUF4174, Domain of unknown function (DUF4174). This domain of unknown function is found in a putative tumor suppressor gene and in a ligand for the the urokinase-type plasminogen activator receptor, which plays a role in cellular migration and adhesion.	4.96997e-15
NZ_CP006877.1\|WP_039846839.1\|2561269_2562046_-\|3-ketoacyl-ACP-reductase	gnl\|CDD\|237188	PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional.	3.92584e-126
NZ_CP006877.1\|WP_039845413.1\|2553407_2555576_-\|cellulose-synthase	gnl\|CDD\|274400	TIGR03030, Cellulose_synthase_UDP-forming, cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.	5.44705e-100
NZ_CP006877.1\|WP_039845418.1\|2562045_2563551_-\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	4.91967e-103
NZ_CP006877.1\|WP_039845417.1\|2559599_2561255_-\|alanine-phosphoribitol-ligase	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	0
NZ_CP006877.1\|WP_039845411.1\|2551132_2552395_-\|type-II-toxin-antitoxin-system-HipA-family-toxin	gnl\|CDD\|341492	cd17793, HipA, type II toxin-antitoxin sytem toxin HipA and similar proteins. This family contains type II toxin-antitoxin (TA) system HipA family toxins similar to Escherichia coli and Shewanella oneidensis HipA, which is a serine/threonine-protein kinase that phosphorylates Glu-tRNA-ligase (GltX), preventing it from being charged, leading to an increase in uncharged tRNA(Glu). This induces amino acid starvation and the stringent response via RelA/SpoT and increased (p)ppGpp levels, which inhibits replication, transcription, translation and cell wall synthesis, reducing growth and leading to persistence and multidrug resistance. HipA is the toxin component of the HipA-HipB TA module that is a major factor in persistence and bioflim formation; its toxic effect is neutralized by its cognate antitoxin HipB. HipA, with HipB, acts as a a corepressor for transcription of the hipBA promoter. Structures of HipAB:DNA complexes from both Escherichia coli and Shewanella oneidensis reveal distinct complex assembly.	2.44739e-165
NZ_CP006877.1\|WP_039845414.1\|2556897_2558283_-\|hypothetical-protein	gnl\|CDD\|274787	TIGR03794, conserved_hypothetical_protein, NHLM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a leader peptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Leader Microcin, or NHLM. This family, therefore, is designated as NHLM bacteriocin system secretion protein. Some but not all NHLM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products].	5.7539e-09
NZ_CP006877.1\|WP_039845412.1\|2552391_2552622_-\|transcriptional-regulator	gnl\|CDD\|213767	TIGR03070, couple_hipB, transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions].	1.51533e-17
NZ_CP006877.1\|WP_039845419.1\|2563584_2565093_-\|sorbosone-dehydrogenase	gnl\|CDD\|143436	cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone dehydrogenase-like. Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase.	0

>NZ_CP006877.1|WP_039845412.1|2552391_2552622_-|transcriptional-regulator
MAKQVRSPADIGALVRSARKEQNLRQDELAGVAGVGLRFIVDLEAGKPTAQIGKVLQVLQTLGCSVVILAPGEGRR
>NZ_CP006877.1|WP_039845411.1|2551132_2552395_-|type-II-toxin-antitoxin-system-HipA-family-toxin
MMTKVLNVWWDGSIVGQFTQDRHGDIGFAYAQAWLDDETALPLSASLPKRLERFSRRECRPFFGGLLPEESQRLVAAQALGVSPANDFALLDRLGGDVAGALQLLPEDQEPVRTEPLADQQITPLDEAGIVRILDALPTRPLLAGQEGLRLSLAGAQSKVPLVLIDGQLALPVPGQATTHILKPPIARFPGTTDTEAFVMKLAAAIGLEVAPVEPRSANGRPFLLVERYDRYRDANDVVRRIHQEDFCQALGVPPETKYASEGGPTFKDCFELLRRVSERPATDLAKLMDAAIFNLIVGNADAHGKNFSILYDDLGPRMAPFYDLLSTVAYPDLSPKMAMRIGNRATLAEMDADGWKAFAKETGIGLLLVRRRVKELADATGEAIAQVSETVSPLAIDPETTNHVAALIADRAKLVSLSI
>NZ_CP006877.1|WP_039845410.1|2550842_2551091_-|hypothetical-protein
MRSWSAGRFLLARLAANSCDDRTYQHVSYHRDLSSAAKAMWPAKMSHIHKLGIPVRQIEEKMMEKQRPMKEMVGPEGSPISL
>NZ_CP006877.1|WP_039845409.1|2550490_2550775_+|hypothetical-protein
MDVTTNLDRMTPGEKYRVIRLLSRRLHFSAILAKQRGDDFWDRLEHLADRLLRESDAIVTGGPCISDPILVEAADLLARFDNAATSGRQLRLNE
>NZ_CP006877.1|WP_039845408.1|2549474_2549771_+|hypothetical-protein
MHTDKAMAFIQAIPGRAGYVNDSISVLTGEFRWLDAKEVTLVLSKPEAGIEPFTVRPMMAIEPGDNDKLKELEGLLTLDGTKFQYFTDVSRPDLVCPR
>NZ_CP006877.1|WP_039845407.1|2548416_2549028_-|hypothetical-protein
MKPSNAIPLALLLGAATMPFLGTTDAQAQNRDINQSVFAFGGTMVDADILQASNPFGVTYEDLPIFGLGYQYFPARMGSFRFGLEAGLAGRYGGHPNAEFWGGVVGRYDGFEIGDTVRISPAFTFGISHVTHTQEGRERKNELEGNGDARTLFYLGPELNLSFNAMPDVDFFWRIHHRSGAWGTLGDMHGGSSANVVGVRFNF
>NZ_CP006877.1|WP_082046537.1|2547988_2548501_+|hypothetical-protein
MRLCLANLNCPSEKSADCLHYFVGRAGSIYAGVSDRSHLLALKMLKGLVAVLDADCSWHWMHSGEVIARTLTDQDTGDAFQVDPLLGQIGGPTGQFTADDAYGGKPTYDAVINHSAAAHPTRPPTCGTRTAANVVGLEMKKVLQKLNRTPTTFALEPPCMSPSVPQAPDR
>NZ_CP006877.1|WP_039845405.1|2546454_2547201_-|SIMPL-domain-containing-protein
MALRTIRNVAFGMLIGMPAALAGASASAADETKPREAVIMVSGEGESALAPDMAVLNLAVVKQAKTAREALDENNKAMAGVLAALKKGGIADKDLQTSGFSVQPQYNYPQNNDGQPKPPELISYQVSNGLTVRVRDLGELGGIIDQAVTLGVNQGGDIQFTNDKPNAAIEAARKDAVAAAIKKAKTLTEAAGVKLGRIIEISENSVRPLPQPVYRAAMMKEASDAAVPVQGGENAYNVTVNVTFALEQ
>NZ_CP006877.1|WP_039845404.1|2545830_2546214_-|hypothetical-protein
MTNALPPLHNGHAPITLQELFREALYAFEEWDTELTEPIVTFEGRVIPISLVFEAMRECDDIVPMNIVGAVTERLTKPWEGEGPLDQMSFSTAARVMRVLVRKRLLANGGADIMAVSSRTAERKPPE
>NZ_CP006877.1|WP_039845403.1|2545330_2545732_-|DUF4174-domain-containing-protein
MLKSIIREIMGPAPRAPVSPDCLKPFIGSKRVLIIFADADDDRAAVQDELLRTSHLRFIEDDIEVFSIAGGGVFPLFEGSYDLDADEIRDDLEGPQPGEFGLVLLDRDGTVKLRSSEPVRPEEIIGALSSMPH
>NZ_CP006877.1|WP_039845413.1|2553407_2555576_-|cellulose-synthase
MSPEVVTLSDAILFSLLSLALIMGCALLLDSRRGKDRVMFGMILIVMLLNYLYFRITKTLPDFEWSAYALWPRAYLSFEIVVIFYTVLSIVFFFRRTDHSAAADASELTIAGAASPPAVDVFICTYNEELSILERTILAAKAIDYQNFTVWVLDDGRRDWLEDYCAEVSVRYLRRGDNVGAKGGNLNNAIRQSAKETNAPFILILDADFAPQRAILKRTVGQFADPEIGLIQTPQFYYNADPVQHNLLASKAWVDDQRIFFDVMQPSKDGWGAAFCVGTSCIVRRDALGMIGGMPQETVTEDIHLTYRLLQKGLKTRWLNERLSVGLSAESLSGYITQRCRWCLGTIQVALLRDGPFFGRGYTFLQRLHYFHGLLFWFCRPFILLLMAAPILYYFLGLPAIQMEPEAFFLYALPMVAGMWAFHSWVSDRRSMPLFTEVSQMVSAIPITIALIHALIHPFGRPFKVTAKGEDRARVSILYPITGTFLLVIILTFIGMLNGPLMGTYNDLDGFSVAWGMVVMVYAFVSLLVCIELPREPLDRIQFPLARQANLARDGNFTPCTVDTISISKAEITLHDGRAAGQVRPGDMLIFSPFADFDVAGRVTGTDRARLGLSVSIVAVRDRRYDWEIRQTAEDIRRKMIQRLFSEMPQAMPARAHPLAAIRGLWRRTFDHPSKLAGGVETHAVTVRTLQAPRRWQRPRDLAPRVPLLQIGSASAAPPLAE
>NZ_CP006877.1|WP_052451551.1|2555560_2556865_-|hypothetical-protein
MKHLRSTIEIGRLLLLAAAVTVLQTFPALAGSEHKKLACTLCDGLAAQMGGDPAQPFVLRSFEPPNGGSALHPALENTGFTYDNALALMAFYGCKRKAEARRIADALVRAVETDRHYHDGRLRNAYRSGPVVPGKEGMLLPGYWSAASNSWIEDGYQVGSATGSTAWGALALLMAYEETEQPAYLDTARKIMDWIHRSTADPQNPGYFGGFFGHEPAPERMTWKSTEHNLDIYAADSWLARLDAGGDWTYRGDSALKFLRAMWDDGEERFYIGSVPDSNAPNIAMSGLDAELWPLIAVPDFKSKVERVMEWTELNHGVDGGFDFNSDRDGIWLEGTAQAALVLRLAGRSEKAEPLFKTIAAQVTPGGLIYATVNEQLSTGLQVGPNSSPGDFKYYRLPHIGATGWAVLAALDLNPFLGRAGQALISKDSPCPPK
>NZ_CP006877.1|WP_039845414.1|2556897_2558283_-|hypothetical-protein
MKDETLLLDPRDHKILSVSRAFGYVFAFMLIFTIAMAMIPNQFFIVSTRAVINAPVQMIASPIYGRVDRISLQVGQVVKLGDVMATVSNPNQDQTSLTGLRLEKLDLTEKLNNTRSVVQERTDQLQKVNSQIADVKDGAISELSAVIENARYNVQTYEARLNEQNALLQRQLVLLKKKLISEASIEPQRQKRNAAQYELDSARGELRRNEIVLSLVERDIYTGGTVAANLLTLEMQRTKLAGEIAEDNIEINQMTERKQQVENLIAREEGRLGKAGAAEVVAERHGQIVSVDASFGDFVMQGQPVAKSLDCNEAFAAAVYRSRDVTSLEIGMPAIVNFRSLGVKRDAQIYKIVRYFNSGPENRYYAKFPEAEGHEVYVLVRMDEPAGEGGAPAHQNNDKFFGCHVGEDVIVSLGETVVSRIARYSKLAMDRLASPGTMDSASALFDKATAPRSAAAEPANP
>NZ_CP006877.1|WP_082046538.1|2558678_2559059_+|hypothetical-protein
MVTLDNLVPKDHLLRKIDAVIRSLTARLCLDMQNPRKLMSNFRGSWLAGFLPYCCAGGVAGGVAGGVAGAGSAAGGVAGAGVAGAGSVAGGVAGAVDVAGGVVAGGWVVVVSPAGGVAGGALVRGQ
>NZ_CP006877.1|WP_039845416.1|2559261_2559489_+|hypothetical-protein
MLNRQSFECYSSSGIRKAVSAAHRIESDYTIFCSSHRKKEEFDIRKVICARHDAVAAFASSITALAGSMTVTEQA
>NZ_CP006877.1|WP_039845417.1|2559599_2561255_-|alanine-phosphoribitol-ligase
MAYDYIITGGGPAGCVLANRLSEDPNVQVLLLEAGGSDWSPLFHMPAGFAKMTKGVASWGWETVPQRHMKGRVLRYTQAKVIGGGSSINAQLYTRGNAADYDLWASEEGCDGWDYRSVLPYFKRAEDNQRFADDYHSYGGPLGVSMPVSALPICDAYIRAGQELGIPYNHDFNGRQQAGVGFYQLTQRNRRRSSASLGYLSPIGDRDNLTIRMNARVVRIVIEGRKAIGVEVGGRNGVELIRAEREVVVSSGAIGSPKLLLQSGIGPADHLKAVGVDVKHDLPGVGGNLQDHLDLFVISECTGDHTYDGVAKLHRTLWAGLQYVLFRSGPVASSLFETGGFWYADPNARSPDIQFHLGLGSGIEAGVARLKNAGVTLNSAYLHPRSRGTVRLASADPADAPLIDPNYWSHPHDRKMSIEGLKIAREIMQQAALKPFVLEEKLPGSSVVTDEQLFDYGCANAKTDHHPVGTCKMGADAMAVVGLDLKVRGLEGLRVCDSSVMPRVPSCNTNAPTIMVGEKGADIIRGREPLQRAIFSWERNDMRPRARSDVR
>NZ_CP006877.1|WP_039846839.1|2561269_2562046_-|3-ketoacyl-ACP-reductase
MAQGRRPVALVTGGRQGIGLAIAEALARAGHDVAITGIEDVGPKDPVVETLRLLGVDAFYLKADLADVDGHSATIEDVLQTFGAIDCLVNNAGIGSIVRGDFIELKPENFDAVLDTNLRGTVFFTQAVVKAMLASGAGQATRSIVNITSVSSELTSPERLDYCISKAGLSAFTKGLAVRLAESGIGVFELRPGIIRTAMTATVSEKYDALISGGLVPMKRWGEAEDIGAIVAALASGSFGFATGSVIDAGGGLSIGRL
>NZ_CP006877.1|WP_039845418.1|2562045_2563551_-|GMC-family-oxidoreductase
MVKQQDIVIIGSGIGGATIAAALAPSGADILVLEAGGHIEDRPENRDQRAIFQRGHFRPKEFWYESDGKPFNPGNYYNVGGNSKFFGAVMVRYRREDFHEMQHLEGISPAWPFAYEELEPWYSRAEQLYQVRGQIGEDPTEPVHSHNYAFPPVPDEPSIALVRERMKRNGLHPYSLPLGIDIERWLARAKTPWDAHPNSFDGKMDAETIGLALALQHPNVRLQTGSRVTRLQTAADGKRIETVHYRKDGADEAVSAKLVILAAGAVQSAVLLLRSANEKNPKGLANSSDQVGRNFMNHNSSAVIAVSPTYRNDAIYQKTFGFNDYYLTDGESGPPLGNVQLLGRVSGAILKANMPSVPEWMLNKLSAHAIDFYAMSEDIPHPESRIMVDGERILLQWVRTNWPAHLMLVKKLKQALRAAGFPLVLSRPFDKRTPSHQCGTVRIGNDPAQAPLDIWCRAYDHTNLFVVDASYLPTSAAVNPALTVAAQALRVGDHILQKELA
>NZ_CP006877.1|WP_039845419.1|2563584_2565093_-|sorbosone-dehydrogenase
MTVLLKPQKLVDAKVREFSMLIDGKWVEGIEAGTIERVAPGHGVTVSRYKAATKDDAVKAIAAARKAFDHGLWPRMTASERSNILLKAADMIAARADELAYLDAIEAGKPITQVQGEIAGAADIWRYAAALARDLHGESYNTLSEGTLGVVLREAVGVVSIITPWNFPFLIVSQKLPFALAAGCTAVVKPSELTSGSTLVLGEILMEAGVPAGVVNILAGTGAAVGATMTGHPDVDMVSFTGSTGIGRLTMENASKTLKKVSLELGGKNPQIVFPDADLDAFVDAAVFGAYFNAGECCNAGSRLILHRDIADDVTTRVAALSQKVKVGDPLDPSTQVGAIITPQHLEKVQGYVSAAAGSGANVALGGSHIDFGFGQYMAPTILSGVKPEMAVAREEVFGPVLSVLTFETAEDAVRIANSVDYGLSASVWSRDFDTCLTIGRKVRAGTIWMNTFMDGAAELPFGGYRQSGLGRELGRHAVEDYTETKTLNMHIGARTGWWMPR
>NZ_CP006877.1|WP_039845420.1|2565092_2565866_-|enoyl-CoA-hydratase/isomerase-family-protein
MGEVKVSIEGHIAVMTVSRPEKLNAFDIDMLKALAAACDEVEANASVRVAILTGEGKAFSAGGDIKAWGDMQANEFGHAWVRFGHRIFERLATLRMPLIAALNGHALGGGLELAGAADIRIAERQIKIGLPETGLGMIPGWSGTQRLVKRFGAQIVRRMVLGGEMFSADEAKANGIVDAVVGTGTSLAAARDYASRIALRGPAALEISKLLIASANGEDNGAAVEALGSILAAKTGDLKEGVSAFAEKRPAQFKGEW

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1460534 : 1471221

Bacillus_phage(16.67%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039844550.1\|1460534_1461788_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	2.0e-11	34.6
WP_039844551.1\|1462156_1462786_+	ATP-dependent Clp endopeptidase, proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	7.9e-62	58.2
WP_022714809.1\|1463088_1464366_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	8.7e-132	57.6
WP_039844552.1\|1464767_1467185_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	9.1e-207	50.1
WP_028739578.1\|1467390_1467666_+	HU family DNA-binding protein	A0A172Q061	Acinetobacter_phage	2.1e-06	34.1
WP_039846708.1\|1469022_1471221_+	alkaline phosphatase	M4SLV1	Cyanophage	3.4e-83	44.8

DBSCAN-SWA_2

1678386 : 1690509

uncultured_Mediterranean_phage(90.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039844710.1\|1678386_1679247_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	3.0e-35	37.3
WP_052451510.1\|1679246_1679960_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	6.3e-39	45.8
WP_022715359.1\|1680147_1680339_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	2.6e-08	69.8
WP_039844712.1\|1680390_1681020_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_039844713.1\|1681016_1681844_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	3.7e-51	45.7
WP_039844714.1\|1681945_1683229_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.1e-94	44.4
WP_039844715.1\|1683233_1684001_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.5e-22	29.2
WP_039844716.1\|1684007_1684661_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.8e-16	35.5
WP_039844717.1\|1684832_1686425_+	peptidoglycan-binding protein	I3PV24	Clostridium_phage	3.9e-12	30.8
WP_039844718.1\|1686501_1687374_-	DUF815 domain-containing protein	NA	NA	NA	NA
WP_039844719.1\|1687585_1687933_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	7.1e-12	39.1
WP_039844720.1\|1687977_1690509_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	6.7e-59	46.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP006879

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

301558 : 370909

uncultured_virus(18.18%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039845935.1\|301558_303157_-\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	7.4e-56	33.3
WP_039845936.1\|303231_303576_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_052451602.1\|303572_303962_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_082046644.1\|304014_304398_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_040114296.1\|304394_304742_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	3.4e-38	64.5
WP_040114297.1\|304787_306425_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.3e-107	42.1
WP_052451703.1\|306453_306837_+\|transposase	transposase	NA	NA	NA	NA
WP_040114298.1\|307196_307319_-	hypothetical protein	NA	NA	NA	NA
WP_040114299.1\|307494_308193_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_052451704.1\|310149_311694_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	9.7e-61	32.9
WP_040114302.1\|312789_313032_-	hypothetical protein	NA	NA	NA	NA
WP_040114303.1\|313113_314400_-	hypothetical protein	NA	NA	NA	NA
WP_052451706.1\|314612_315146_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_040114304.1\|315402_316599_-	amidohydrolase	NA	NA	NA	NA
WP_040114305.1\|317966_318311_+	hypothetical protein	NA	NA	NA	NA
WP_040114306.1\|318846_319731_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_040114307.1\|319957_321283_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_040114465.1\|321313_321850_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_040114308.1\|322525_322849_-	hypothetical protein	NA	NA	NA	NA
WP_040114309.1\|322980_324042_+	peptidase C45	NA	NA	NA	NA
WP_040114310.1\|325677_327279_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_040114311.1\|328685_329627_+	ABC transporter permease	NA	NA	NA	NA
WP_040114312.1\|329629_330511_+	ABC transporter permease	NA	NA	NA	NA
WP_040114313.1\|330512_331520_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.1e-09	25.7
WP_040114314.1\|331516_332527_+	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.3e-20	31.8
WP_040114315.1\|332663_334199_+	hypothetical protein	NA	NA	NA	NA
WP_040114316.1\|335003_335456_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_040114317.1\|336275_337235_+	branched-chain amino acid transferase	NA	NA	NA	NA
WP_040114318.1\|337319_338510_+	glycine C-acetyltransferase	D2TEZ5	Emiliania_huxleyi_virus	1.1e-35	27.3
WP_040114319.1\|340647_341901_-	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_040114320.1\|342671_343370_+	CoA transferase subunit A	NA	NA	NA	NA
WP_040114321.1\|343387_344017_+	CoA transferase subunit B	NA	NA	NA	NA
WP_040114322.1\|344088_345270_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_040114323.1\|345285_345783_+	UPF0262 family protein	NA	NA	NA	NA
WP_040114324.1\|345827_347273_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA
WP_040114326.1\|347559_347925_-	hypothetical protein	NA	NA	NA	NA
WP_040114327.1\|348457_349747_-	citrate (Si)-synthase	NA	NA	NA	NA
WP_040114328.1\|349889_350069_-	hypothetical protein	NA	NA	NA	NA
WP_040114329.1\|350122_351715_-	isocitrate lyase	NA	NA	NA	NA
WP_040114466.1\|351842_353234_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_040114330.1\|353817_355425_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_040114311.1\|355424_356366_+	ABC transporter permease	NA	NA	NA	NA
WP_040114312.1\|356368_357250_+	ABC transporter permease	NA	NA	NA	NA
WP_040114313.1\|357251_358259_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.1e-09	25.7
WP_052451707.1\|358255_359338_+	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.9e-20	31.8
WP_040114331.1\|359346_360729_+	hypothetical protein	S4VS02	Pandoravirus	1.1e-12	26.5
WP_040114333.1\|362634_364449_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.3e-34	27.6
WP_040114334.1\|366606_368505_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA
WP_040114468.1\|369355_370909_+\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP006877

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP006879

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection