CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP006473	Synechococcus sp. UTEX 2973 plasmid, complete sequence	0 crisprs	NA	0
NZ_CP006472	Synechococcus sp. UTEX 2973 plasmid, complete sequence	0 crisprs	NA	4
NZ_CP006471	Synechococcus sp. UTEX 2973, complete genome	0 crisprs	WYL,Cas9_archaeal,Cas14c_CAS-V-F,csa3,cas3,cas4,DinG	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 8636

Burkholderia_phage(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011055176.1\|3199_3772_+	HEAT repeat domain-containing protein	NA	NA	NA	NA
WP_011055175.1\|3869_4706_+	DUF4062 domain-containing protein	NA	NA	NA	NA
WP_011055173.1\|4963_5215_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	7.9e-05	40.0
WP_011055172.1\|5168_5447_-	BrnT family toxin	K4NX81	Burkholderia_phage	6.0e-22	61.2
WP_011055171.1\|5501_5726_-	hypothetical protein	NA	NA	NA	NA
WP_011055170.1\|5772_6573_-	ABC transporter permease	NA	NA	NA	NA
WP_011055169.1\|6574_7798_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011055168.1\|7823_8636_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.7e-28	36.7

DBSCAN-SWA_2

11979 : 14981

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011055164.1\|11979_12969_-	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	4.4e-59	42.8
WP_011055163.1\|13099_14281_-	chromate transporter	NA	NA	NA	NA
WP_011055162.1\|14432_14981_-	MgtC/SapB family protein	G3MA03	Bacillus_virus	1.5e-08	29.9

DBSCAN-SWA_3

19145 : 37246

Tupanvirus(22.22%)

integrase

attL 25240:25254|attR 32424:32438

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011055156.1\|19145_20135_+	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	4.4e-75	50.8
WP_011055155.1\|20131_21091_+	serine acetyltransferase	NA	NA	NA	NA
WP_011055154.1\|21185_22106_+	protein SrpI	A0A2K9L690	Tupanvirus	3.9e-41	33.8
WP_011055153.1\|22340_24221_+	SufS family cysteine desulfurase	Q2XUY6	environmental_halophage	1.9e-90	40.0
WP_011055152.1\|24310_24661_+	sulfurtransferase	NA	NA	NA	NA
WP_011055151.1\|24657_25041_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_011055150.1\|25051_25318_-	hypothetical protein	NA	NA	NA	NA
25240:25254	attL	NA	NA	NA	NA
WP_011055149.1\|25451_26063_+	ParA family protein	W8ECJ6	Mycobacterium_phage	6.6e-05	29.0
WP_011055148.1\|26059_26884_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_011055147.1\|26986_27316_+	hypothetical protein	NA	NA	NA	NA
WP_011055146.1\|27359_27575_+	hypothetical protein	NA	NA	NA	NA
WP_011055145.1\|27565_27916_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_011055144.1\|28005_28968_+\|integrase	tyrosine-type recombinase/integrase	L7TK95	Rhizobium_phage	8.6e-07	29.0
WP_040113188.1\|29494_29722_-	hypothetical protein	NA	NA	NA	NA
WP_011055141.1\|29858_30449_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011055140.1\|30612_31095_-	ANL24	NA	NA	NA	NA
WP_011055139.1\|31317_31992_+	response regulator transcription factor	W8CYM9	Bacillus_phage	6.8e-27	32.7
WP_011055138.1\|31960_33277_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	5.4e-20	29.5
32424:32438	attR	NA	NA	NA	NA
WP_011055137.1\|33552_34176_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	8.5e-08	33.8
WP_011055136.1\|34518_35226_-	GAF domain-containing protein	NA	NA	NA	NA
WP_011055135.1\|35318_36044_+	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_011055134.1\|36271_37246_+	NAD(P)-dependent alcohol dehydrogenase	A0A2K9L7I1	Tupanvirus	9.0e-12	26.2

DBSCAN-SWA_4

42381 : 43806

Paramecium_bursaria_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011055123.1\|42381_43806_+	DUF1254 domain-containing protein	M1IA53	Paramecium_bursaria_Chlorella_virus	2.4e-53	33.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP006471

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2463840 : 2547253

Acidithiobacillus_phage(15.79%)

tRNA,transposase,portal,plate,tail,terminase,integrase

attL 2456330:2456347|attR 2550573:2550590

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2456330:2456347	attL	NA	NA	NA	NA
WP_011243043.1\|2463840_2464680_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_011243044.1\|2464693_2465425_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_011243045.1\|2465424_2466171_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_011243046.1\|2466170_2467232_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_011243047.1\|2467230_2468013_+	ABC transporter permease	NA	NA	NA	NA
WP_081422171.1\|2468015_2468684_-	hypothetical protein	NA	NA	NA	NA
WP_039755809.1\|2468707_2469313_-	superoxide dismutase [Fe]	Q56AR7	Bacillus_thuringiensis_phage	6.1e-43	43.8
WP_011377735.1\|2469471_2470065_+	chorismate-binding protein	A0A0E3FJU8	Synechococcus_phage	2.7e-19	35.3
WP_039755810.1\|2470135_2471710_+	B12-binding domain-containing radical SAM protein	NA	NA	NA	NA
WP_011243052.1\|2471715_2472201_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_011377733.1\|2472249_2472510_-	hypothetical protein	NA	NA	NA	NA
WP_011377732.1\|2472799_2473345_-	DUF721 domain-containing protein	NA	NA	NA	NA
WP_011243054.1\|2473472_2474084_+	hypothetical protein	NA	NA	NA	NA
WP_011243055.1\|2474286_2475060_+	PspA/IM30 family protein	NA	NA	NA	NA
WP_011243056.1\|2475258_2475927_+	PspA/IM30 family protein	NA	NA	NA	NA
WP_011377731.1\|2476029_2477265_+	MFS transporter	NA	NA	NA	NA
WP_011377730.1\|2477308_2478547_+\|tRNA	CCA tRNA nucleotidyltransferase	A0A219YCT8	Aeromonas_phage	9.6e-19	39.0
WP_011377729.1\|2478809_2479238_+	RNA-binding region RNP-1	NA	NA	NA	NA
WP_011243060.1\|2479352_2479676_+	hypothetical protein	NA	NA	NA	NA
WP_011243061.1\|2479771_2480566_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_011243062.1\|2480634_2481513_-	purple acid phosphatase	NA	NA	NA	NA
WP_011377728.1\|2481577_2482444_-	hypothetical protein	NA	NA	NA	NA
WP_155813978.1\|2482600_2484742_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_011243065.1\|2484671_2484989_-	hypothetical protein	NA	NA	NA	NA
WP_011243066.1\|2485274_2485931_+	ATP phosphoribosyltransferase	NA	NA	NA	NA
WP_011377726.1\|2485963_2487760_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.1e-51	29.2
WP_011377725.1\|2487999_2490516_+	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	1.3e-174	37.1
WP_011377724.1\|2490561_2491935_+	serine/threonine protein kinase	M1PCM5	Moumouvirus	7.7e-09	25.8
WP_039756018.1\|2491926_2494476_-	HDIG domain-containing protein	NA	NA	NA	NA
WP_011377722.1\|2494481_2494946_-	hypothetical protein	NA	NA	NA	NA
WP_011377721.1\|2494981_2495851_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	3.3e-34	39.9
WP_011243072.1\|2495893_2496799_+	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_011243073.1\|2496798_2497278_+	divergent PAP2 family protein	NA	NA	NA	NA
WP_011243074.1\|2497416_2498304_-	alpha/beta hydrolase	E0YQD5	Mycobacterium_phage	3.9e-06	33.3
WP_039755814.1\|2498379_2498928_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_039755816.1\|2499501_2499708_-	hypothetical protein	NA	NA	NA	NA
WP_011243082.1\|2499718_2500366_-	DNA damage-inducible protein	H6U5J3	Mycobacterium_phage	7.7e-20	50.0
WP_039755818.1\|2500428_2500707_-	hypothetical protein	NA	NA	NA	NA
WP_071818112.1\|2500850_2501069_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011377714.1\|2501160_2501400_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_081429504.1\|2501368_2501767_+	helix-turn-helix transcriptional regulator	A0A2H4PAP1	Aphanizomenon_phage	1.2e-07	41.0
WP_011243085.1\|2502194_2502746_+	SocA family protein	NA	NA	NA	NA
WP_011243086.1\|2503248_2503977_+	hypothetical protein	NA	NA	NA	NA
WP_011377712.1\|2504202_2504793_-	hypothetical protein	NA	NA	NA	NA
WP_011377711.1\|2504802_2506182_-	hypothetical protein	NA	NA	NA	NA
WP_011377710.1\|2506374_2506797_-	DUF488 domain-containing protein	NA	NA	NA	NA
WP_049749325.1\|2506798_2507614_-	hypothetical protein	A0A142KAR9	Gordonia_phage	2.6e-28	29.9
WP_011243089.1\|2507885_2508350_-	chain A, D20c mutant of T4 lysozyme	A0A1J0GVQ7	Pseudoalteromonas_phage	4.1e-31	50.4
WP_155813884.1\|2508346_2508523_-	hypothetical protein	NA	NA	NA	NA
WP_039755822.1\|2508552_2508747_-	hypothetical protein	NA	NA	NA	NA
WP_011377708.1\|2508746_2509325_-	DUF882 domain-containing protein	A0A2I7R851	Vibrio_phage	3.0e-07	35.5
WP_011377706.1\|2509594_2511037_-	late control protein D	D4HTW7	Vibrio_phage	1.4e-40	33.7
WP_011243092.1\|2511033_2511246_-\|tail	phage tail protein	A0A1S6KZY4	Salmonella_phage	1.1e-12	46.7
WP_011243093.1\|2511245_2512166_-\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	2.6e-29	50.8
WP_011377705.1\|2512165_2515018_-\|tail	phage tail tape measure protein	A0A193GYN8	Enterobacter_phage	2.6e-11	23.2
WP_155813977.1\|2515007_2515145_-	hypothetical protein	NA	NA	NA	NA
WP_011377704.1\|2515141_2515432_-\|tail	phage tail assembly protein	Q75QK8	Wolbachia_phage	6.3e-06	32.4
WP_011377703.1\|2515435_2515939_-\|tail	phage major tail tube protein	K4I1G5	Acidithiobacillus_phage	8.6e-51	56.0
WP_011377702.1\|2515935_2517360_-	hypothetical protein	A0A193GYC3	Enterobacter_phage	4.3e-140	61.7
WP_011377701.1\|2517467_2517974_-	hypothetical protein	NA	NA	NA	NA
WP_011377700.1\|2517977_2519141_-\|tail	phage tail protein	E5E3V2	Burkholderia_phage	2.9e-25	49.6
WP_011377699.1\|2519145_2520597_-	hypothetical protein	A0A1B2LRR4	Wolbachia_phage	2.8e-70	37.1
WP_011377698.1\|2520600_2522616_-	DUF4815 domain-containing protein	K4ICQ5	Acidithiobacillus_phage	2.2e-153	44.0
WP_011243101.1\|2522619_2523105_-	hypothetical protein	K4I002	Acidithiobacillus_phage	7.1e-26	34.5
WP_011243102.1\|2523203_2524043_-\|tail	phage tail protein	K4I1F8	Acidithiobacillus_phage	1.3e-38	39.4
WP_011243103.1\|2524039_2524879_-	hypothetical protein	K4HZB7	Acidithiobacillus_phage	2.9e-59	48.7
WP_011243104.1\|2524875_2525220_-\|plate	phage baseplate protein	A0A088FV58	Escherichia_phage	8.0e-32	58.0
WP_039756023.1\|2525219_2525471_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_011377697.1\|2525485_2526046_-\|plate	phage baseplate assembly protein V	Q9JML8	Wolbachia_phage	2.7e-21	33.9
WP_041674885.1\|2526026_2526383_-	hypothetical protein	NA	NA	NA	NA
WP_155813976.1\|2526379_2527039_-	hypothetical protein	NA	NA	NA	NA
WP_011243107.1\|2527010_2527322_-	hypothetical protein	NA	NA	NA	NA
WP_011243108.1\|2527327_2527657_-	DUF2190 family protein	A0A2I7S8N5	Vibrio_phage	4.5e-08	39.7
WP_011243109.1\|2527704_2529579_-	hypothetical protein	B7SYD7	Stenotrophomonas_phage	8.4e-75	32.1
WP_011243110.1\|2529601_2531065_-\|portal	phage portal protein	Q75QM9	Wolbachia_phage	1.5e-82	39.9
WP_011243111.1\|2531064_2531274_-	hypothetical protein	NA	NA	NA	NA
WP_011243112.1\|2531401_2533282_-\|terminase	phage terminase large subunit family protein	A0A1B2LRQ2	Wolbachia_phage	4.3e-188	52.1
WP_011243113.1\|2533590_2534130_-	hypothetical protein	K4ICN8	Acidithiobacillus_phage	1.1e-16	35.9
WP_011243114.1\|2534344_2534950_-	hypothetical protein	NA	NA	NA	NA
WP_011243115.1\|2534974_2535520_-	hypothetical protein	NA	NA	NA	NA
WP_011377695.1\|2535789_2538333_-	hypothetical protein	G8EY43	Synechococcus_phage	2.8e-113	41.5
WP_011243117.1\|2538325_2538688_-	VRR-NUC domain-containing protein	A0A2I5ARE6	Synechococcus_phage	6.9e-26	56.8
WP_011243118.1\|2538680_2540090_-	DEAD/DEAH box helicase	A0A2I5ARD8	Synechococcus_phage	2.8e-115	51.6
WP_011243119.1\|2540308_2540752_-	hypothetical protein	NA	NA	NA	NA
WP_041674884.1\|2541369_2541618_-	hypothetical protein	NA	NA	NA	NA
WP_011243121.1\|2541730_2542813_+	hypothetical protein	J7HXB6	Pseudomonas_phage	2.8e-54	47.3
WP_011377693.1\|2542873_2543164_+	hypothetical protein	NA	NA	NA	NA
WP_039755827.1\|2543166_2543370_+	hypothetical protein	NA	NA	NA	NA
WP_011243122.1\|2543366_2543705_+	hypothetical protein	NA	NA	NA	NA
WP_039755828.1\|2543701_2543932_+	hypothetical protein	NA	NA	NA	NA
WP_011243123.1\|2543924_2544428_+	hypothetical protein	NA	NA	NA	NA
WP_011243124.1\|2544424_2545078_+	hypothetical protein	NA	NA	NA	NA
WP_011243125.1\|2545104_2545629_+	dCTP deaminase	D6PIK2	uncultured_phage	2.4e-43	51.2
WP_039755830.1\|2546015_2546234_+	hypothetical protein	NA	NA	NA	NA
WP_011243126.1\|2546209_2547253_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
2550573:2550590	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP006472

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP006471

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection