CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009049	Salmonella enterica subsp. enterica serovar Paratyphi A strain 50973 chromosome, complete genome	7 crisprs	c2c9_V-U4,cas3,DEDDh,DinG,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK	0	6	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009049_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009049_1

2185957-2186053

Orphan

Consensus_repeat	Method
AATTGACCCTGAACGCCTGGCGGCAATTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009049_1

>merge|NZ_CP009049|1|2185957-2186053|CRISPRCasFinder
AATTGACCCTGAACGCCTGGCGGCAATTCATCTTAAAACCCGCTACAACATAAACTGTTCGGCCTGACAATTGACCCTGAACGCCTGGCGGCAATTC

>NZ_CP009049|1|1|2185957-2186053|CRISPRCasFinder
AATTGACCCTGAACGCCTGGCGGCAATTC	ATCTTAAAACCCGCTACAACATAAACTGTTCGGCCTGAC
AATTGACCCTGAACGCCTGGCGGCAATTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009049.1\|WP_000080606.1\|2190892_2191642_-\|vitamin-B12-ABC-transporter-ATP-binding-protein-BtuD	unknown	unknown	gnl\|CDD\|226622
NZ_CP009049.1\|WP_001082189.1\|2186390_2187437_+\|3-deoxy-7-phosphoheptulonate-synthase-AroH	unknown	unknown	gnl\|CDD\|183726
NZ_CP009049.1\|WP_000069330.1\|2182626_2185005_-\|phosphoenolpyruvate-synthase	unknown	unknown	gnl\|CDD\|235809
NZ_CP009049.1\|WP_000562005.1\|2189324_2190038_-\|anti-FlhDC-factor-YdiV	unknown	unknown	gnl\|CDD\|225110
NZ_CP009049.1\|WP_001181565.1\|2191641_2192193_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|182585
NZ_CP009049.1\|WP_000089116.1\|2187593_2187785_+\|hemin-uptake-protein-HemP	unknown	unknown	gnl\|CDD\|226707
NZ_CP009049.1\|WP_000089372.1\|2172243_2173731_-\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|236990
NZ_CP009049.1\|WP_001213256.1\|2190351_2190816_-\|lipoprotein	unknown	unknown	gnl\|CDD\|236773
NZ_CP009049.1\|WP_000860213.1\|2181768_2182527_+\|type-I-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|235036
NZ_CP009049.1\|WP_039773555.1\|2176862_2179991_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP009049.1\|WP_000729470.1\|2168589_2169006_-\|cysteine-desulfuration-protein-SufE	unknown	unknown	gnl\|CDD\|181767
NZ_CP009049.1\|WP_000175667.1\|2187820_2189263_-\|YdiU-family-protein	unknown	unknown	gnl\|CDD\|234583
NZ_CP009049.1\|WP_000948902.1\|2171480_2172227_-\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|181965
NZ_CP009049.1\|WP_000261869.1\|2174534_2175881_+\|L-cystine-transporter	unknown	unknown	gnl\|CDD\|224736
NZ_CP009049.1\|WP_000637930.1\|2176455_2176866_-\|1,4-dihydroxy-2-naphthoyl-CoA-hydrolase	unknown	unknown	gnl\|CDD\|182360
NZ_CP009049.1\|WP_000672404.1\|2193771_2196159_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NZ_CP009049.1\|WP_001229266.1\|2193467_2193767_-\|integration-host-factor-subunit-alpha	unknown	unknown	gnl\|CDD\|178961
NZ_CP009049.1\|WP_000418973.1\|2173739_2174108_-\|Fe-S-cluster-assembly-scaffold-SufA	unknown	unknown	gnl\|CDD\|181915
NZ_CP009049.1\|WP_001537749.1\|2176168_2176357_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|318201
NZ_CP009049.1\|WP_000954980.1\|2192284_2193265_-\|vitamin-B12-ABC-transporter-permease-BtuC	unknown	unknown	gnl\|CDD\|235159

Protein	Function_ID	Function_description	E-value
NZ_CP009049.1\|WP_000080606.1\|2190892_2191642_-\|vitamin-B12-ABC-transporter-ATP-binding-protein-BtuD	gnl\|CDD\|226622	COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism].	3.53553e-156
NZ_CP009049.1\|WP_001082189.1\|2186390_2187437_+\|3-deoxy-7-phosphoheptulonate-synthase-AroH	gnl\|CDD\|183726	PRK12756, PRK12756, Trp-sensitive 3-deoxy-7-phosphoheptulonate synthase AroH.	0
NZ_CP009049.1\|WP_000069330.1\|2182626_2185005_-\|phosphoenolpyruvate-synthase	gnl\|CDD\|235809	PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated.	0
NZ_CP009049.1\|WP_000562005.1\|2189324_2190038_-\|anti-FlhDC-factor-YdiV	gnl\|CDD\|225110	COG2200, Rtn, c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms].	2.3703e-26
NZ_CP009049.1\|WP_001181565.1\|2191641_2192193_-\|glutathione-peroxidase	gnl\|CDD\|182585	PRK10606, btuE, putative glutathione peroxidase; Provisional.	1.70085e-143
NZ_CP009049.1\|WP_000089116.1\|2187593_2187785_+\|hemin-uptake-protein-HemP	gnl\|CDD\|226707	COG4256, HemP, Hemin uptake protein [Inorganic ion transport and metabolism].	6.58149e-27
NZ_CP009049.1\|WP_000089372.1\|2172243_2173731_-\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|236990	PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional.	0
NZ_CP009049.1\|WP_001213256.1\|2190351_2190816_-\|lipoprotein	gnl\|CDD\|236773	PRK10838, spr, bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase.	9.97016e-48
NZ_CP009049.1\|WP_000860213.1\|2181768_2182527_+\|type-I-3-dehydroquinate-dehydratase	gnl\|CDD\|235036	PRK02412, aroD, type I 3-dehydroquinate dehydratase.	2.59957e-142
NZ_CP009049.1\|WP_039773555.1\|2176862_2179991_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.17276e-106
NZ_CP009049.1\|WP_000729470.1\|2168589_2169006_-\|cysteine-desulfuration-protein-SufE	gnl\|CDD\|181767	PRK09296, PRK09296, cysteine desulfuration protein SufE.	1.86064e-105
NZ_CP009049.1\|WP_000175667.1\|2187820_2189263_-\|YdiU-family-protein	gnl\|CDD\|234583	PRK00029, PRK00029, YdiU family protein.	0
NZ_CP009049.1\|WP_000948902.1\|2171480_2172227_-\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|181965	PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.	0
NZ_CP009049.1\|WP_000261869.1\|2174534_2175881_+\|L-cystine-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
NZ_CP009049.1\|WP_000637930.1\|2176455_2176866_-\|1,4-dihydroxy-2-naphthoyl-CoA-hydrolase	gnl\|CDD\|182360	PRK10293, PRK10293, 1,4-dihydroxy-2-naphthoyl-CoA hydrolase.	7.13147e-96
NZ_CP009049.1\|WP_000672404.1\|2193771_2196159_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NZ_CP009049.1\|WP_001229266.1\|2193467_2193767_-\|integration-host-factor-subunit-alpha	gnl\|CDD\|178961	PRK00285, ihfA, integration host factor subunit alpha; Reviewed.	2.5201e-64
NZ_CP009049.1\|WP_000418973.1\|2173739_2174108_-\|Fe-S-cluster-assembly-scaffold-SufA	gnl\|CDD\|181915	PRK09504, sufA, iron-sulfur cluster assembly scaffold protein; Provisional.	6.85334e-90
NZ_CP009049.1\|WP_001537749.1\|2176168_2176357_-\|hypothetical-protein	gnl\|CDD\|318201	pfam15930, YdiH, Domain of unknown function. YdiH is a family of proteins found in bacteria. Proteins in this family are typically between 62 and 80 amino acids in length. The function is not known.	9.09058e-28
NZ_CP009049.1\|WP_000954980.1\|2192284_2193265_-\|vitamin-B12-ABC-transporter-permease-BtuC	gnl\|CDD\|235159	PRK03784, PRK03784, vtamin B12-transporter permease; Provisional.	2.14644e-176

>NZ_CP009049.1|WP_000069330.1|2182626_2185005_-|phosphoenolpyruvate-synthase
MSNNGSSPLVLWYNQLGMNDVDRVGGKNASLGEMITNLSGMGVSVPNGFATTADAFNQFLDQSGVNQRIYELLDKTDIDDVSQLAKAGAQIRQWIIDTPFQPALENAIRDAYAQLSSDDENASFAVRSSATAEDMPDASFAGQQETFLNVQGFDAVLVAVKHVFASLFNDRAISYRVHQGYDHRGVALSAGVQRMVRSDLASSGVMFSIDTESGFDQVVFITSAWGLGEMVVQGAVNPDEFYVHKPTLAAGRPAIVRRTMGSKKIRMVYAATQEHGKQVKIEDVPQEQRDIFSLTNEEVQELAKQAVQIEQHYGRPMDIEWAKDGHTGKLFIVQARPETVRSRGQVMERYTLHAQGKIIAEGRAIGHRIGAGTVKVIHDIGEMNRIEPGDVLVTDMTDPDWEPIMKKAAAIVTNRGGRTCHAAIIARELGIPAVVGCGDATERMKDGEKVTVSCAEGDTGYVYADMLDFSVKSSSVDTMPELPLKVMMNVGNPDRAFDFACLPNEGVGLARLEFIINRMIGVHPRALLEFADQDAALQNDIREMMKGFDSPREFYVGRLTEGIATLGAAFYPKRVIVRLSDFKSNEYANLVGGERYEPHEENPMLGFRGAGRYVAESFRDCFALECEAVKRVRNAMGLTNVEIMIPFVRTVDQAKAVIEELARQGLKRGENGLKIIMMCEIPSNALLAEQFLEYFDGFSIGSNDMTQLALGLDRDSGVVSELFDERNDAVKALLSMAIRAAKKQGKYVGICGQGPSDHEDFAAWLMEEGIDSLSLNPDTVVQTWLSLAELKK
>NZ_CP009049.1|WP_000860213.1|2181768_2182527_+|type-I-3-dehydroquinate-dehydratase
MKTVTVKNLIIGEGMPKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLSLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVLRLRKMQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAVNDLRSVLMILHNA
>NZ_CP009049.1|WP_039773555.1|2176862_2179991_-|FAD-binding-oxidoreductase
MIPQISQAPGVVQLVLNFLQALEQQGFTGDTATSYADRLTMSTDNSIYQLLPDAVVFPRSTADVALLARLAAEPRFTSLIFTPRGGGTGKNGQALNQGIIVDMSRYMNRIIEINPEEGWVRVEAGVIKDQLNQALKPYGYFFAPELSTSNRATLGGMINTDASGQGSLVYGKTSDHVLGIRAVLLGGDILDTQSMPVELARTLGENTTMPGRIYQTVYQSCLENRQLILDSFPKLNRFLTGYDLRHVFNDDMTRFDLTRILTGSEGTLAFITEARLDITPIPKVRRLVNVKYDSFDSALRNAPFMVDARALSVETVDSKVLNLAREDIVWHSVSELITDVPDKEMLGLNIVEFAGDDEALIDGQVEALCHRLDGLMARAEAGVIGWQLCTDLTGIERIYAMRKKAVGLLGNAKGAAKPIPFAEDTCVPPEHLADYIAEFRALLDGHGLSYGMFGHVDAGVLHVRPALDMCDPQQELLMKQISDEVVALTARYGGLLWGEHGKGFRAEYSPAFFGEVLYGELRKIKAAFDPHNRLNPGKICPPQGIEAPMMKVDAVKRGSWDRQIPLAVRQTWRGAMECNGNGLCFNFDAKSPMCPPMKISLNRGNGLCFNFDAKSPMCPPMKISLNRIHSPKGRATLVREWLRLLADRGVDPLKLEKELPEKRASLRTLIARTRNSWHKRKGEYDFSHEVKEAMSGCLACKACTTQCPIKIDVPEFRSRFLQLYHTRYLRPVRDHLVATVETYAPLMARAPKTFNFFINQPVVRNLAKKHIGMVDLPLLSAPSLQQQLVGHPSANMTLEQLERMSAEQKAKTVLVVQDPFTSYYDARIVADFIRLAEKLGRRPVLLPFSPNGKAQHIKGFLNRFAKTAKKTSEFLNRIAALGMPMVGVDPALVLCYRDEYKLALGEQRGDFHVLLVNEWLAQEINARLSVEVSGEPWYFFGHCTEVTALPGAPAQWAAIFAHFGAKLENVSVGCCGMAGTYGHELTNHKNSLGIYELSWHQAMQRLPRNRCLATGYSCRSQVKRIEGTGVRHPLQALLEIIG
>NZ_CP009049.1|WP_000637930.1|2176455_2176866_-|1,4-dihydroxy-2-naphthoyl-CoA-hydrolase
MIWKREVTLDALNAMGEGNMVGLLDIRFERIGDDTLEATMPVDHRTKQPFGLLHGGASVVLAESIGSVAGYLCTQGEQKVVGLEVNANHVRSARQGRVRGVCKALHTGARHQVWQIEIFDEQGRLCCSSRLTTAIV
>NZ_CP009049.1|WP_001537749.1|2176168_2176357_-|hypothetical-protein
MSTDLDPTQLAIEFLRRDKTELSPAQYLKRLKQLELEFADLLTLSATELKEEIYFAWRLGVH
>NZ_CP009049.1|WP_000261869.1|2174534_2175881_+|L-cystine-transporter
MVVTLAYIALFLVFSWVILRINQKSDSLSKSVFIAIFLGAVIGLSLHFISANHTNTIIEWYSIVGNGYVHLLKLVAIPLIFISILSAINKLENSAGIGKMSLTIVGCMLCLVMVAGFIGLLTAHILGLDASAFVHMPSMLTTEEVNKTAAVSIPQLVTSLIPTNIFLDLTGARSVSVIGIVIFTLIAGIALLKVKKEAPEEGQKLSAGINAIQIWVMKMVRIVIALTPYGVMALMTTVFSSYRLEQFASLLGFIGACYIAIFMMFIVHATLLILSGNNPARYFRMVWPVLTFAFVSRSSAASIPLAISAQEKFGVQSTIANISASFGSSMGQNGCAGIYPAIMVAMIAPTIGIDPLSLHFLAAMLPAIALGSIGVAGVGGGGTFAALIVLSTLNFPVALVGIFIAIEPIVDMARTALNVNGSMMSGVLANRILNNHTADDMPAVIDRP
>NZ_CP009049.1|WP_000418973.1|2173739_2174108_-|Fe-S-cluster-assembly-scaffold-SufA
MELHSGTFNPEDFPWQGLTLTPAAAAHIRELAAKQPGMLGVRLSVKQTGCAGFGYVLDTVREPDKDDLVFEAEGAKLFAPLQAMPFIDGTEVDYVQEGLNQLFKFHNPKAQNECGCGESFGV
>NZ_CP009049.1|WP_000089372.1|2172243_2173731_-|Fe-S-cluster-assembly-protein-SufB
MSRNTEATEEVGIWTGGRLNYKEGFFTQLPTDELAKGISEEVVRAISAKRNEPDWMLEFRLNAYRAWLDMDEPHWLKAHYDKLNYQDYSYYSAPSCGNCDDSCVSQPGAVQQTGANTFLSKEVEDAFEQLGVPVREGKEVAVDAIFDSVSVATTYREKLAEQGIIFCSFGEAIHDHPELVRKYLGTVVPGNDNFFAALNAAVASDGTFIYVPKGVRCPMELSTYFRINAEKTGQFERTILVADEGSYVSYIEGCSAPVRDSYQLHAAVVEVIIHKDAEVKYSTVQNWFPGDNNTGGILNFVTKRALCEGENSKMSWTQSETGSAITWKYPSCILRGDNSIGEFYSVALTSGHQQADTGTKMIHIGKNTRSTIISKGISAGHSQNSYRGLVKIMPTATNARNFTQCDSMLIGADCGAHTFPYVECRNNSAQLEHEATTSRIGEDQLFYCLQRGISEEDAISMIVNGFCKDVFSELPLEFAVEAQKLLAISLEHSVG
>NZ_CP009049.1|WP_000948902.1|2171480_2172227_-|Fe-S-cluster-assembly-ATPase-SufC
MLSIKDLQVSVEEKAILRGLNLEIRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGSVTFKGKDLLELSPEERAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRAYRGQASLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVAEGVNALRDDKRAFIIVTHYQRILDYIKPDYVHVLYQGRIVRSGDFTLVKQLEEQGYGWLTEQQ
>NZ_CP009049.1|WP_000729470.1|2168589_2169006_-|cysteine-desulfuration-protein-SufE
MAALPDKEKLLRNFTRCANWEEKYLYIIELGQRLAELNPQDRNPQNTIHGCQSQVWIVMRRNANGIIELQGDSDAAIVKGLMAVVFILYHQMTAQDIVHFDVRPWFEKMALTQHLTPSRSQGLEAMIRAIRAKAATLS
>NZ_CP009049.1|WP_001082189.1|2186390_2187437_+|3-deoxy-7-phosphoheptulonate-synthase-AroH
MNRTDELRTARIDSLVTPTELAQRYPVSSSVASHVTDSRRRIEKILNGEDPRLLVVIGPCSIHDLNAAMEYATQLQAQRQKHQARLEIVMRTYFEKPRTVVGWKGLISDPDLNGSYRVNHGLELARRLLLQVNELGVPTATEFLDMVTGQFIADLISWGAIGARTTESQIHREMASALSCPVGFKNGTDGNTRIAVDAIRASRASHMFLSPDKDGQMTIYQTSGNPYGHIIMRGGKKPNYHAEDIAAACDTLHEFDLPEHLVVDFSHGNCQKQHRRQLDVCDDICQQIRNGSTAIAGIMAESFLREGTQKIISGQPLIYGQSITDPCLNWEDTEVLLEKLAAAVDSRF
>NZ_CP009049.1|WP_000089116.1|2187593_2187785_+|hemin-uptake-protein-HemP
MSRMDNTELPHPKEIDNETLLPAAERRVNSQALLGPDGKVIIDHNGQEYLLRKTQAGKQLLTK
>NZ_CP009049.1|WP_000175667.1|2187820_2189263_-|YdiU-family-protein
MTLSFTARWRDELPATYTALLPTPLKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDTPVQRETQETGAMLMRLAQSHMRFGHFEHFYYRREPEKVQQLADFAIRHYWPQWQDVAEKYALWFEEVAARTGRLIAEWQTVGFAHGVMNTDNMSILGLTIDYGPFGFLDDYDPGFIGNHSDHQGRYRFDNQPSVALWNLQRLAQTLTPFIEIDALNRALDRYQDALLTHYGQRMRQKLGFFTEQKDDNVLLNELFSLMAREGSDYTRTFRMLSHTEQQSASSPLRDTFIDRAAFDAWFDRYRARLRTEAVDDALRQQQMQRVNPAIVLRNWLAQRAIDAAEQGDMAELHRLHEVLRQPFTDRDDDYASRPPEWGKRLEVSCSS
>NZ_CP009049.1|WP_000562005.1|2189324_2190038_-|anti-FlhDC-factor-YdiV
MIASLDELYHSELFFLPVMDENARLVGLEIIATFAAEDGAVRMPTELVAPRLSVEEQYCLFVEKLALLETCQHFFIQHKLIAWLNLPPAISDLLLLDSELFSRAARFPFLELAINENYPGLNQGKNNETLANLAMHFPLMLANFGAGEASTKAIFDGLFKRVMLDKNFIQQRAEMISFEPFMHAIVAQISSSCESLMIAGIDTEAMFARAAPLGFSAFQGGLWPPVPVSQLIKLVQR
>NZ_CP009049.1|WP_001213256.1|2190351_2190816_-|lipoprotein
MRFWLLVITALFLAGCSTHRAPAPNARLSDSITVIAGLNDQLQSWRGTPYRYGGMSRRGVDCSGFVVVTMRDKFDLQLPRDTREQSKIGTRIDKDELLPGDLVFFKTGSGESGLHVGIYDTNNEFIHASTSRGVMRSSLDNVYWRKNFWQARRI
>NZ_CP009049.1|WP_000080606.1|2190892_2191642_-|vitamin-B12-ABC-transporter-ATP-binding-protein-BtuD
MSQLMQLKDVAESTRLGPLSGEVSAGEILHLVGPNGAGKSTLLARMAGLTSGEGSIRFGGAPLEAWATATLAQHRAYLAQQQNPPFAMPVWHYLTLHQPDKTRTGQLNEVADMLGLGDKLGRSVNQLSGGEWQRVRLAAVVLQIHPDANPVGQLLLLDEPMNSLDVAQQNALDRVLHHLCQAGIAIVMSSHDLNHTLRHAHKAWLLKRGKLIACGRREEVFTPSYLAQAYGLRFRRLDVEGHPMLISAT
>NZ_CP009049.1|WP_001181565.1|2191641_2192193_-|glutathione-peroxidase
MQNSLLNTHVTTIDGEVTTLEKYAGKVLLIVNVASRCGLTPQYEQLENIQKAWADQGFVVLGFPCNQFMGQEPGSEEEIKTYCASTWGVTFPMFSKIDVNGDARHPLYQKLIAAAPTAVAPEKSGFYERMVSKGRTPLYPDDILWNFEKFLVGRDGQVVQRFSPDMTPEDPIVMESIKIALAK
>NZ_CP009049.1|WP_000954980.1|2192284_2193265_-|vitamin-B12-ABC-transporter-permease-BtuC
MLTFARQQQRRNVRWLLSLSLLVLLATLLSLCAGEQWIAPGDWLSARGELFVWQIRLPRTLAVLLVGAALALSGAVMQALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLAGWALGLCAIAGALIITLILLRFARRHLSTSRLLLAGVALGIICSALMTWAIYFSTSFDLRQLMYWMMGGFGGVDWQQSWLMIALIPVLIWICCQSQPLNMLALGETSARQLGLPLWFWRNLLVVATGWMVGVSVAMAGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGAIALLLADVVARLALASAELPIGVVTATLGAPVFIWLLLKSAR
>NZ_CP009049.1|WP_001229266.1|2193467_2193767_-|integration-host-factor-subunit-alpha
MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKEE
>NZ_CP009049.1|WP_000672404.1|2193771_2196159_-|phenylalanine--tRNA-ligase-subunit-beta
MKFSELWLREWVNPAIDSDALANQITMAGLEVDGVEPVAGSFNGVVVGEVVECAQHPNADKLRVTKVNVGGERLLDIVCGAPNCRQGLKVAVATIGAILPGDFKIKAAKLRGEPSEGMLCSFSELGISDDHSGIIELPADAPLGTDIREYLKLDDNTIEISVTPNRADCLGIIGVARDVAVLNKAPLQEPEMAPVTATISDTLPITVEAADACPRYLGRVVKGINVNAPTPLWMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIDGGIVVRMAKEGETVVLLDGSEATLNADTLVIADHHKALGIAGIFGGEHSGVNGETQNVLLECAYFNPLSITGRARRHGLHTDASHRYERGVDPALQYKAIERATRLLLDICGGDAGPIIDVSNEATLPKRATITLRRSKLDRLIGHHIADEQVSDILRRLGCEVTEGQDEWKAVAPTWRFDMEIEEDLVEEVVRVYGYNNIPDEPIQAGLIMGTHREADLSLKRVKTMLNDKGYQEVITYSFVDPKVQQLIHPGAEALLLPNPISVEMSAMRLSLWSGLLATVVYNQNRQQNRVRIFETGLRFVPDTQANLGIRQDLMLAGVICGNRYDEHWNLAKETVDFYDLKGDLEAVLDLTGKLGDIQFKAEMNPALHPGQSAAIYLKDERIGFIGVVHPELERKLDLNGRTLVFELEWNKLADRIVPQAREISRFPANRRDIAVVVAENVPAADILSECKKVGVNQVVGVNLFDVYRGKGVAEGYKSLAISLILQDTNRTLEEEEIAATVAKCVEALKERFQASLRD

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Crispr_ID: NZ_CP009049_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009049_2

2557444-2557580

Orphan

Consensus_repeat	Method
GAAGCTGCCGATAAAAATCGTTGTCTTTAATAACAGCGTGCTGGGCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009049_2

>merge|NZ_CP009049|2|2557444-2557580|CRISPRCasFinder
GAAGCTGCCGATAAAAATCGTTGTCTTTAATAACAGCGTGCTGGGCTTTCAGTGTGCTGATGGGCGATTTTCTCTCGGTGGTACAGAGGAAGCTGCCGATAAAAATCGTCGTCTTTAATAACAGCGTGCTGGGCTTT

>NZ_CP009049|2|2|2557444-2557580|CRISPRCasFinder
GAAGCTGCCGATAAAAATCGTTGTCTTTAATAACAGCGTGCTGGGCTTT	CAGTGTGCTGATGGGCGATTTTCTCTCGGTGGTACAGAG
GAAGCTGCCGATAAAAATCGTCGTCTTTAATAACAGCGTGCTGGGCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009049.1\|WP_001617140.1\|2549457_2550408_+\|VirK/YbjX-family-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP009049.1\|WP_000447499.1\|2545899_2546121_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NZ_CP009049.1\|WP_000566419.1\|2557942_2558944_+\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710
NZ_CP009049.1\|WP_001201759.1\|2548193_2549312_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP009049.1\|WP_000458794.1\|2553307_2554960_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP009049.1\|WP_000895390.1\|2565715_2566384_+\|arginine-ABC-transporter-permease-ArtM	unknown	unknown	gnl\|CDD\|182978
NZ_CP009049.1\|WP_000866901.1\|2560483_2561497_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_CP009049.1\|WP_000756587.1\|2564261_2564993_+\|arginine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|184969
NZ_CP009049.1\|WP_001001677.1\|2564999_2565716_+\|arginine-ABC-transporter-permease-ArtQ	unknown	unknown	gnl\|CDD\|182979
NZ_CP009049.1\|WP_000027184.1\|2563515_2564244_+\|arginine-ABC-transporter-ATP-binding-protein-ArtP	unknown	unknown	gnl\|CDD\|182980
NZ_CP009049.1\|WP_000125879.1\|2546250_2548197_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP009049.1\|WP_001270720.1\|2562771_2563287_+\|lipoprotein	unknown	unknown	gnl\|CDD\|182526
NZ_CP009049.1\|WP_000934064.1\|2542948_2545225_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP009049.1\|WP_000178698.1\|2554971_2555940_+\|NADH-oxidoreductase	unknown	unknown	gnl\|CDD\|236735
NZ_CP009049.1\|WP_000520789.1\|2545255_2545576_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP009049.1\|WP_000599776.1\|2550404_2552063_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP009049.1\|WP_000079020.1\|2558954_2560388_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187556
NZ_CP009049.1\|WP_001160725.1\|2562320_2562644_-\|heavy-metal-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|179490
NZ_CP009049.1\|WP_000491118.1\|2552264_2553164_+\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287
NZ_CP009049.1\|WP_001202292.1\|2561493_2562324_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|225567

Protein	Function_ID	Function_description	E-value
NZ_CP009049.1\|WP_001617140.1\|2549457_2550408_+\|VirK/YbjX-family-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	2.70491e-128
NZ_CP009049.1\|WP_000447499.1\|2545899_2546121_+\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	5.83011e-48
NZ_CP009049.1\|WP_000566419.1\|2557942_2558944_+\|low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	0
NZ_CP009049.1\|WP_001201759.1\|2548193_2549312_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP009049.1\|WP_000458794.1\|2553307_2554960_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP009049.1\|WP_000895390.1\|2565715_2566384_+\|arginine-ABC-transporter-permease-ArtM	gnl\|CDD\|182978	PRK11122, artM, arginine ABC transporter permease ArtM.	5.64635e-144
NZ_CP009049.1\|WP_000866901.1\|2560483_2561497_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	1.45674e-53
NZ_CP009049.1\|WP_000756587.1\|2564261_2564993_+\|arginine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|184969	PRK15007, PRK15007, arginine ABC transporter substrate-binding protein.	4.60877e-177
NZ_CP009049.1\|WP_001001677.1\|2564999_2565716_+\|arginine-ABC-transporter-permease-ArtQ	gnl\|CDD\|182979	PRK11123, PRK11123, arginine ABC transporter permease ArtQ.	7.51913e-163
NZ_CP009049.1\|WP_000027184.1\|2563515_2564244_+\|arginine-ABC-transporter-ATP-binding-protein-ArtP	gnl\|CDD\|182980	PRK11124, artP, arginine transporter ATP-binding subunit; Provisional.	0
NZ_CP009049.1\|WP_000125879.1\|2546250_2548197_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP009049.1\|WP_001270720.1\|2562771_2563287_+\|lipoprotein	gnl\|CDD\|182526	PRK10533, PRK10533, putative lipoprotein; Provisional.	6.68166e-122
NZ_CP009049.1\|WP_000934064.1\|2542948_2545225_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP009049.1\|WP_000178698.1\|2554971_2555940_+\|NADH-oxidoreductase	gnl\|CDD\|236735	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional.	0
NZ_CP009049.1\|WP_000520789.1\|2545255_2545576_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.53033e-48
NZ_CP009049.1\|WP_000599776.1\|2550404_2552063_-\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP009049.1\|WP_000079020.1\|2558954_2560388_+\|SDR-family-oxidoreductase	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	6.78681e-140
NZ_CP009049.1\|WP_001160725.1\|2562320_2562644_-\|heavy-metal-binding-domain-containing-protein	gnl\|CDD\|179490	PRK02877, PRK02877, hypothetical protein; Provisional.	5.24866e-67
NZ_CP009049.1\|WP_000491118.1\|2552264_2553164_+\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	1.91685e-118
NZ_CP009049.1\|WP_001202292.1\|2561493_2562324_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|225567	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	6.07963e-112

>NZ_CP009049.1|WP_000178698.1|2554971_2555940_+|NADH-oxidoreductase
MTMPTSQCPWRMQVHHIRQETPDVWTIALLCHDYYPYRAGQYALVSVRNSAETLRAYTLSSTPGVSEYITLTVRRIEDGTGSQWLTHDIKRGDYIWLSDAMGDFTCDDKTEDKFLLLAAGCGVTPIMSMRRWLAKYRPQADVQVIFNVRSPDDVIFADEWRQYPVTLVAENHATEGFVAGRLTTELLQRVPDLASRTIMTCGPAPYMDFVEQGVKALGVTRFFKEKFFTPVAETATSGLKFTKLQPAQEFYAPIGTTLLEALESNKVPVAAACRAGVCGCCKTKVVSGDYTVSSTMTLSEAEIAEGYVLACSCHPQGDLVLA
>NZ_CP009049.1|WP_000458794.1|2553307_2554960_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAVKAREYGIINHDVDNFAPRAFFSTLTNVNFDSPRIVGYAREAIAMREALKAQCLSVDANAHCDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECAMEIGQMNFKVMSILDAGETTKYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGSYDDRIWTRSIVGWPGVSHLEGDDFGPVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLVGGCDGARGERNYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFFTPDLLAILNEKFGLRSVTTVEEDMKQLLSA
>NZ_CP009049.1|WP_000491118.1|2552264_2553164_+|lysine-exporter-LysO-family-protein
MFSGLLIILVPLIVGYLIPLRHKAALQLINRLLSWIVYLILFFMGISLAFLDNLASNLVAIFHYSAVSITIILLCNIAALLWLERILPWRHHHQQEKLPSRIAMALESLQLCGVVVLGFVIGLSGLSVLQHATEASEYTLIFLLFLVGIQLRNSGMTLKQIVLNRRGMMVAVVVVASSLLGGVINAFILDLPLKTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELLAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGVEIVPAAIVHGFILSLLVPLLMAFFSA
>NZ_CP009049.1|WP_000599776.1|2550404_2552063_-|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPELDLYHFVREDFWFPPGDIKGREHHLYIILTFRETQPGRHRVRRYRALEACWSPCEDDFHRIFYRLEGECGADGSVMTLRSFLNSDGQPLLVENINDQVRHLVRLMPVLRLRDARFMRRIRNGTVPNVPDVEVTARQLDFLARELATRPQNLTDGQIRQGLSAMVQLLEHYFSEQGAGQARHRLMRRRSQNEQRSWRYLDIINRMIDKPGSRSHRVILLGLFSTLLQAKGTLRLHKDARPLLLVEDPETRLHPIMLSVAWQLLNLLPLQRIATTNSGELLSLTPVEHVVRLVRESSRVAAWRLGPGGLSAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPALDMEHFMYRQGFADVFHRVAQLPPNVPMNTRKIITKAIHRSSKPDLAIEVAMEAGRRGIDAVPPLFRKMFSRVVWLARGRAD
>NZ_CP009049.1|WP_001617140.1|2549457_2550408_+|VirK/YbjX-family-protein
MTQLTDNTWYTSDYISPLQLFIRLTRGQLQPGKFWRKASFRRKFLIRSLVMPRATSQLLTNLTQWPELNTLLARQPRLPIRLHRPYMAVNIKRDFALDALCFHYQQMRQLLSREQQVSYLSQYGLNLAKFETKTGELFQLDLVSLVSLDKEGESTIVVRDAQLRILAEITFTLCRFNQQRTLFIGGLQGAANDVPHEIIQQATKACHGLFPKRIVMEALCQFAQVFQAEKIIAVSNDAHVYRSWRYMDKKTQMHADYDAFWESLGGERIKGNYYALPLAIARKSESEIASKKRAEYRRRYALLDSVVEQVPATFKR
>NZ_CP009049.1|WP_001201759.1|2548193_2549312_-|macrolide-transporter-subunit-MacA
MRAKGKKFKKRYLVIILILLVGGMVSWRMINAPLPTYQTLIVRPGDLEQSVLATGKLDALRKVDVGAQVSGQLKTLLVSIGDNVKKDQLLGVIDPDQAENQIKEVEATLMELNAERQQAAAELKLARVTLARQQQLAKTQAVSQQDLDTAATELAVKQARIGTIDAQIKRNRASLDTAKTNLEYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLRAGQKAWFTIAGDPQTRYEGVLKDILPTPEKINDAIFYYARFEVPNPKRILRLDMTAQVYIQLMDVKNVLIIPLAALGEPVGGNRYKVALLRNGEKREREVVIGERNDTDVEVVKGLEAGDEVIIGESRPGATP
>NZ_CP009049.1|WP_000125879.1|2546250_2548197_-|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTALLELCNVSRSYPSGEEQVAVLKDISLQIHAGEMVAIVGVSGSGKSTLMNILGCLDKPTSGTYRVAGRDVSTLDPDALAQLRREHFGFIFQRYHLLSHLTAAQNVEIPAVYAGIERKKRQARARELLLRLGLSDRVDYPPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILRQLRDRGHTVIIVTHDPLIAAQAERIIEIHDGKIVHNPPAQEKKREQGVDAAVVNTAPGWRQFASSFREALSMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRAMGTNTIDIHPGKDFGDDNPQYRQALKYDDLVAIQKQPWVNSATPSVSKSLRLRYGNIDIAVNANGVSGDYFNVYGMSFREGNTFNAVQQQDRAQVVVLDANTRRQLFPNKANVVGEVVLVGNMPVIVIGVAEEKPSMYGNSNLLQVWLPYSTMSDRIMGQSWLNSITVRVKDGVDSDQAEQQLTRLLTLRHGKKDFFTWNMDSVLKTAEKTTYTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAMLVCLVGGALGISLSMFIAFMLQLFLPGWEIGFSLTALASAFLCSTFTGILFGWLPARNAARLDPVDALARE
>NZ_CP009049.1|WP_000447499.1|2545899_2546121_+|cold-shock-like-protein-CspD
METGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASVIVPIEAEAVA
>NZ_CP009049.1|WP_000520789.1|2545255_2545576_-|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLVEDSVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP009049.1|WP_000934064.1|2542948_2545225_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDIVNFISHGTRKDEPSQSSDLGNQPTGDEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSVEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDNAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMGEIKKVFTPEFRNRLDNIIWFDHLSGEVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNALTYGFQSAQKHKPEAAH
>NZ_CP009049.1|WP_000566419.1|2557942_2558944_+|low-specificity-L-threonine-aldolase
MIDLRSDTVTRPSRAMLEAMMTAPVGDDVYGDDPTVNALQRYAADFSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQGAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLENVAAKIKADDIHFARTRLLSLENTHNGKVLPRAYLKDAWTFTRERGLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRATRWRKMVGGGMRQAGILAAAGLYALKHNVARLQEDHDNAAWLAQQLREAGAEVMRHETNMLFVRVGEAQAAALGDYLRERNILINAAPIVRLVTHLDVSREQLADVVAHWRAFLAR
>NZ_CP009049.1|WP_000079020.1|2558954_2560388_+|SDR-family-oxidoreductase
MAQRILVLGASGYIGQHLVFALSQQGHQVRAAARRVERLEKQRLANVSCHKVDLHWPENLPTLLRDVDTVYYLVHGMGEGGDFIAHERQAALNVRDALRQTPVKQLIFLSSLQAPAHEQSDHLRARQLTADTLRDAGVPVTELRAGIIVGAGSAAFEVMRDMVYNLPILTPPRWVRSRTTPIALENLLYYLVGLLEHPAREHRILEAAGPQVLSYQQQFERFMAVSGKRRPLIPVPFPTRWISVWFLNVITSVPPTTAKALIQGLRHDLLADDAALKKLIPQTLITFDDAVRRTLKEEEKLVNSSDWGYDALAFARWRPEYGYFPKQAGFTAQTPASLSALWQVVNRLGGKEGYFFGNILWQTRAAMDRLVGHKLAKGRPSHTLLKPGDTVDSWKVIIVEPEKQLTLLFGMKAPGLGRLSFTLHDKGRYREIDVRAWWHPHGMPGLIYWLLMIPAHLFIFRGMARRIARLAEQITEK
>NZ_CP009049.1|WP_000866901.1|2560483_2561497_+|NAD(P)-dependent-oxidoreductase
MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLEKMGAEFVHADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAAGEEVINLLAQANPQTHFTVLRPQSLFGPHDKVFIPRLAHMMHHYGSVLLPHGGSALVDMTYYENAIHAMWLASQPGCDHLPSGRAYNITNGENRTLRSIVQKLIDELTIDCRIRSVPYPMLDMIARSMERFGKKSAKEPPLTHYGVSKLNFDFTLDTTRAQDELGYQPIVTLDEGIERTAAWLRDHGNLPR
>NZ_CP009049.1|WP_001202292.1|2561493_2562324_-|N-acetylmuramoyl-L-alanine-amidase
MRALLWLVGLALLLTGCASEKGIIDKEGYQLDTRHRAQAAYPRIKVLVIHYTAENFDVSLATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGVSFWRGATRLNDTSIGIELENRGWQMSGGVKSFAPFESAQIQALIPLAKDIIARYNIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQGIGAWPDAQRVAFYLAGRAPYTPVDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD
>NZ_CP009049.1|WP_001160725.1|2562320_2562644_-|heavy-metal-binding-domain-containing-protein
MQFSTTPTLEGQSIVEYCGVVTGEAILGANIFRDFFAGIRDIVGGRSGAYEKELRKAREIAFQELGEQAKALGADAVVGIDIDYETVGKDGSMLMVSVSGTAVKTRR
>NZ_CP009049.1|WP_001270720.1|2562771_2563287_+|lipoprotein
MRYSKLSLLIPCALLLSACTTVTPAYKDNGPRIGACVEGGPDSVAQQFYDYCIQHHSNDIAALRPYLSDNLAKLLTDASRDTEHRQLMSGDLFSSRATLPDSANVASASTISNRDARNIPLRVALKQGDQSWQDEVLMIHEGSCWVIDDVRYLGGDVHAPAGTLRQSIENR
>NZ_CP009049.1|WP_000027184.1|2563515_2564244_+|arginine-ABC-transporter-ATP-binding-protein-ArtP
MSIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLTIAGNHFDFTKTPSDKAIRELRQNVGMVFQQYNLWPHLTVVQNLIEAPCRVLGLTKDQALARAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARALMMEPLVLLFDEPTAALDPEITAQIVSIIHELAETNITQVIVTHEVEVARKTASRVIYMENGHIVEHGDAGCFAHPQTEAFKNYLSH
>NZ_CP009049.1|WP_000756587.1|2564261_2564993_+|arginine-ABC-transporter-substrate-binding-protein
MKKVLIAALIAGFSLSATAAQTIRFATEASYPPFESMDANNKIVGFDVDLANALCKEIDASCTFTNQAFDSLIPSLKFRRFDAVMAGMDITPEREKQVLFTTPYYDNSALFVGQQGKYTSVDQLKGKKVGVQNGTTHQKFIMDKHPEITTVPYDSYQNAKLDLQNGRIDAVFGDTAVVTEWLKANPKLVPVGDKVTDKDYFGTGLGIAVRQGNTELQQKFNTALEKVKKDGTYETIYNKWFQK
>NZ_CP009049.1|WP_001001677.1|2564999_2565716_+|arginine-ABC-transporter-permease-ArtQ
MNEFFPLASAAGMTVGLAVCALIIGLALAMFFAVWESVKWRPIAWIGSALVTILRGLPEILVVLFIYFGSSQLLLTLSDGFTLHLGFTQIPVQMEIENFDVSPFLCGVIALSLLYAAYASQTLRGALKAVPSGQWESGQALGLSKTAIFFRLVMPQMWRHALPGLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFNWYIIAAAIYLVITLISQYILKRIDLRATRFERRPD
>NZ_CP009049.1|WP_000895390.1|2565715_2566384_+|arginine-ABC-transporter-permease-ArtM
MLEYLPELLKELHTSLTLTVASIAVALVLALVFTIILTLKTPFVVWLVRGYITLFTGTPLLVQIFLIYYGPGQFPTLQEYPLLWHLLSEPWLCALIALSLNSAAYTTQLFYGAIRAIPEGQWQSCGALGMSKKDTLAILLPYAFKRALSSYSNEVVLVFKSTSLAYTITLMEVMGYSQLLYGRTYDVVVFGAAGVIYLVVNGLLTLMMRLIERKALAFERRN

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Crispr_ID: NZ_CP009049_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009049_3

3131987-3132081

Orphan

Consensus_repeat	Method
TGGACAATCGTTGGACACCCGTTGGACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009049_3

>merge|NZ_CP009049|3|3131987-3132081|CRISPRCasFinder
TGGACAATCGTTGGACACCCGTTGGACAACATTCGCTGTGAGCCGCGTCATTACTGTTGTTTGCGTTGGACAATCGTTGGACATCCGTTGGACAA

>NZ_CP009049|3|3|3131987-3132081|CRISPRCasFinder
TGGACAATCGTTGGACACCCGTTGGACAA	CATTCGCTGTGAGCCGCGTCATTACTGTTGTTTGCGT
TGGACAATCGTTGGACATCCGTTGGACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009049.1\|WP_000049340.1\|3129070_3129367_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009049.1\|WP_000680395.1\|3134414_3134660_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009049.1\|WP_000811302.1\|3128667_3129114_-\|recombination-protein-NinB	unknown	unknown	gnl\|CDD\|368607
NZ_CP009049.1\|WP_000213983.1\|3136387_3136582_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|287970
NZ_CP009049.1\|WP_000344579.1\|3129369_3129690_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236599
NZ_CP009049.1\|WP_001103491.1\|3132649_3132931_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|336083
NZ_CP009049.1\|WP_000786965.1\|3134698_3134908_-\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP009049.1\|WP_000216028.1\|3135271_3135574_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009049.1\|WP_000679702.1\|3128497_3128671_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340181
NZ_CP009049.1\|WP_001066166.1\|3135586_3136174_-\|superinfection-exclusion-protein-B	unknown	unknown	gnl\|CDD\|379492
NZ_CP009049.1\|WP_001125982.1\|3132468_3132615_-\|DUF2740-family-protein	unknown	unknown	gnl\|CDD\|287804
NZ_CP009049.1\|WP_000248682.1\|3129868_3130075_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009049.1\|WP_000712403.1\|3133367_3134057_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP009049.1\|WP_000131495.1\|3130150_3131587_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274672
NZ_CP009049.1\|WP_000975822.1\|3129701_3129857_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009049.1\|WP_000950962.1\|3127841_3128018_-\|protein-ninF	unknown	unknown	gnl\|CDD\|283468
NZ_CP009049.1\|WP_011233124.1\|3128010_3128352_-\|DUF2591-family-protein	unknown	unknown	gnl\|CDD\|107039
NZ_CP009049.1\|WP_000542409.1\|3136618_3136912_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009049.1\|WP_000113770.1\|3128354_3128531_-\|NinE-family-protein	unknown	unknown	gnl\|CDD\|283078
NZ_CP009049.1\|WP_000182204.1\|3133041_3133257_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243

Protein	Function_ID	Function_description	E-value
NZ_CP009049.1\|WP_000811302.1\|3128667_3129114_-\|recombination-protein-NinB	gnl\|CDD\|368607	pfam05772, NinB, NinB protein. The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.	8.55108e-51
NZ_CP009049.1\|WP_000213983.1\|3136387_3136582_+\|hypothetical-protein	gnl\|CDD\|287970	pfam11058, Ral, Antirestriction protein Ral. Ral alleviates restriction and enhances modification by the E.Coli restriction and modification system.	2.82101e-32
NZ_CP009049.1\|WP_000344579.1\|3129369_3129690_-\|hypothetical-protein	gnl\|CDD\|236599	PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed.	0.00190041
NZ_CP009049.1\|WP_001103491.1\|3132649_3132931_-\|hypothetical-protein	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	3.32738e-25
NZ_CP009049.1\|WP_000786965.1\|3134698_3134908_-\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	4.07195e-30
NZ_CP009049.1\|WP_000679702.1\|3128497_3128671_-\|hypothetical-protein	gnl\|CDD\|340181	pfam17466, NinD, Family of unknown function. This is a family of unknown function found in Enterobacteria phage P22 and Enterobacteria phage lambda.	5.83527e-32
NZ_CP009049.1\|WP_001066166.1\|3135586_3136174_-\|superinfection-exclusion-protein-B	gnl\|CDD\|379492	pfam14163, SieB, Super-infection exclusion protein B. This family includes superinfection exclusion proteins. These proteins prevent the growth of superinfecting phage which are insensitive to repression. It aborts lytic development of superinfecting phage.	5.52362e-25
NZ_CP009049.1\|WP_001125982.1\|3132468_3132615_-\|DUF2740-family-protein	gnl\|CDD\|287804	pfam10872, DUF2740, Protein of unknown function (DUF2740). This family of proteins with unknown function has a highly conserved sequence.	6.19611e-17
NZ_CP009049.1\|WP_000712403.1\|3133367_3134057_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	4.14427e-29
NZ_CP009049.1\|WP_000131495.1\|3130150_3131587_-\|AAA-family-ATPase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	0
NZ_CP009049.1\|WP_000950962.1\|3127841_3128018_-\|protein-ninF	gnl\|CDD\|283468	pfam05810, NinF, NinF protein. This family consists of several bacteriophage NinF proteins as well as related sequences from E. coli.	3.34566e-20
NZ_CP009049.1\|WP_011233124.1\|3128010_3128352_-\|DUF2591-family-protein	gnl\|CDD\|107039	PHA01519, PHA01519, hypothetical protein.	3.40254e-44
NZ_CP009049.1\|WP_000113770.1\|3128354_3128531_-\|NinE-family-protein	gnl\|CDD\|283078	pfam05322, NinE, NINE Protein. This family consists of NINE proteins from several bacteriophages and from E. coli.	8.66111e-25
NZ_CP009049.1\|WP_000182204.1\|3133041_3133257_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	4.10103e-21

>NZ_CP009049.1|WP_000131495.1|3130150_3131587_-|AAA-family-ATPase
MTDNFYAPPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKILFEEITRMHREQKPVDGLTLFDELERKSLTVSVGGFAYIADIAKNTPSAANIVAYAMQVRETAMERYAINRMTEATELLYSRNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGEVMEDWVGNLEKRFDPSGEQRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALMFSLEMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRLSEIDMLYIDDTPGLSLAQIVSESRRIKREKGCVGMILVDYLTLMTAEKADRNDLAYGMITKGLKNLAKELDCVVVLLTQLNRALENRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAFDDSVPPGETELILRLNRHGNTGTVYCIQANGAIYDTDQQSAEMRRREREEPHSKKKGGF
>NZ_CP009049.1|WP_000248682.1|3129868_3130075_-|hypothetical-protein
MVNWMLAAIKCIGVGWILLTFFIVLRSYISLVNGGKDPFSMLFGAAFTWVLIGIVPVAIAKMAWCFIN
>NZ_CP009049.1|WP_000975822.1|3129701_3129857_-|hypothetical-protein
MMKISEINYSVIFDALKAYYEVEEDDSVWEIFNQADDQIEEIANALKVLGE
>NZ_CP009049.1|WP_000344579.1|3129369_3129690_-|hypothetical-protein
MDESRKQFQSWFADEIVGADVEFPEFEDGEYVAGEIYDEQLYVMLQAMYMAWIASRAAIEIELPAKNDISGDDHPIPDLVDWDDGRNAGIQECAEAIRAAGIKVKE
>NZ_CP009049.1|WP_000049340.1|3129070_3129367_-|hypothetical-protein
MSKVSRGMKISLIFILNPHRIFLASAVWLSDFVYWLADKLDDFARWLENFANARFESWPLIGERMSDELNRYYADKRKEKSRRESEAIIPASQRSNQK
>NZ_CP009049.1|WP_000811302.1|3128667_3129114_-|recombination-protein-NinB
MKQLFLLRNEAIRNNAIDAILSLPIDDKSPHEVHVKEPKRTKAQNDRMWLMLQDVSRQVLWHGQRLSPEDWKDIFTALWLKTKKLEQRSVPGIDGGVVLLGVRTSKMRKASMTELIEIMFWFGSERNVRWSDDSRREYEWSKRTGRVA
>NZ_CP009049.1|WP_000679702.1|3128497_3128671_-|hypothetical-protein
MKHCYRCGESKDDYRFRPNQPYWHQWCIRCERSPVGNFPLPETKEDVWHDSDEVSPT
>NZ_CP009049.1|WP_000113770.1|3128354_3128531_-|NinE-family-protein
MARQRRSITDIICENCKYLPTKRSRNKRKPIPKESDVKTFNYTAHLWDIRWLRERARK
>NZ_CP009049.1|WP_011233124.1|3128010_3128352_-|DUF2591-family-protein
MDYSQLSDFEINRMVGDIIFKGLWACKPETSGNNTNKLYYGNADTTFEPLNHLPDYCNDPSASWPIIEKHRISILDQLTEWCVDAKGVSPIFDTRPLRAAMIVFLMMQDANNA
>NZ_CP009049.1|WP_000950962.1|3127841_3128018_-|protein-ninF
MLSPSQSLQYQKESVERALTCANCGQKLHVLEVHVCEHCCAELMSDPNSSMYEEEDDE
>NZ_CP009049.1|WP_001125982.1|3132468_3132615_-|DUF2740-family-protein
MPKQLSPDQDKLHKNILRDRFLSSFKQPGRFRAELEKVKLMQKEKGHE
>NZ_CP009049.1|WP_001103491.1|3132649_3132931_-|hypothetical-protein
MNVVATKSKKAARIESTLLNKLAMMGQKTFAKAMGVPEYQVSRWKNGFFSQVSMMLAVLEYGIEDEEMAELTRRLAIYLTKEKAPKNGEFFEA
>NZ_CP009049.1|WP_000182204.1|3133041_3133257_-|helix-turn-helix-domain-containing-protein
MTNKAIQKAVAIAGSQQKLASLCGVKQPTVWRWLHGGGIDAKYVAAIVKATGGRIKARELRPDLADLLAAS
>NZ_CP009049.1|WP_000712403.1|3133367_3134057_+|helix-turn-helix-transcriptional-regulator
MKKETLSDRLNKAMELAGMSQGALAKASGVAQPTIWRLTSGNARGSTKIVEIANALGVNSEWLSTGIGPMKKDGTTPINASPSSNTFKIDILDLEVSAGPGVINREFVEILRSVEYSQDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDVSIKNFDGDGIYAFLYDDTAHVKRLQKMKDKLLVISDNKSYSAWDPIERDEMNRVFVFGKVIGSMPQTYRKHG
>NZ_CP009049.1|WP_000680395.1|3134414_3134660_+|hypothetical-protein
MKHICKKDHRYDPRFTSLPENQGNTGRHKCPGCAFELAMELKAKGIPMYNDDSILADLPESQAGTVRHKDAFEAYKMAYQA
>NZ_CP009049.1|WP_000786965.1|3134698_3134908_-|fumarate-hydratase-FumD
MKNEELAQLRYQEMCRIVGDVVFAMVAEGHETKRVAIADVIRTEIAKGLDKWDDDQLQCMKLAVKLLEE
>NZ_CP009049.1|WP_000216028.1|3135271_3135574_+|hypothetical-protein
MTVIIYGKSTFAGNAKTRRHERRRKLAMERDTICNIIDSIFGCDAPDASHEVKAKRIDRVTKAISLAGTRQKEVEGGSVLLPDVALYAAGHRKSKQITAR
>NZ_CP009049.1|WP_001066166.1|3135586_3136174_-|superinfection-exclusion-protein-B
MNNSWWQELKHFFLQGMTLKQLIHMLIILILLIVVMPVSVKEWVNLHNPEILPHYWMYYILLFCVSYVLNGVFNSVYHAVTERIEALTAQRRKAREEKVVRDLFDSLTPGERAYLAFAVAANNQLKTEKGSPESISLLEKGLITRLPSVIGYPDIDRFVIPEKYFNECYMRFAGKSDILMNELIAQDEQLKKITT
>NZ_CP009049.1|WP_000213983.1|3136387_3136582_+|hypothetical-protein
MTTTIDTNQWCSRFVKCKGCKLDAECMVKPEEMALVREDGKIVDKWAIRTTEMIARELEKLKAI
>NZ_CP009049.1|WP_000542409.1|3136618_3136912_+|hypothetical-protein
MGYTPGPWKWWTSNSFLRLSSQATGKDGGVIDSYVMKDGHSSLIVSKEDMNLIAAAPELLEALLNIVDMEYDVSEWDAVYAKARAAISKALGEERWK

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Crispr_ID: NZ_CP009049_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009049_4

3490363-3490458

Unclear

Consensus_repeat	Method
AGCTGTCGGTCATCGGATTGATAGGGTGGTGGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009049_4

>merge|NZ_CP009049|4|3490363-3490458|CRISPRCasFinder
AGCTGTCGGTCATCGGATTGATAGGGTGGTGGCGCCTGCGCTTCCATCAGACGCGGCAGGTAGCTGTCGGTCATCGGATTGATAGGGTGGTGGCGC

>NZ_CP009049|4|4|3490363-3490458|CRISPRCasFinder
AGCTGTCGGTCATCGGATTGATAGGGTGGTGGCGC	CTGCGCTTCCATCAGACGCGGCAGGT
AGCTGTCGGTCATCGGATTGATAGGGTGGTGGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009049.1\|WP_001165726.1\|3487201_3488152_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187549
NZ_CP009049.1\|WP_000253542.1\|3498028_3498655_-\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	unknown	unknown	gnl\|CDD\|178974
NZ_CP009049.1\|WP_001136881.1\|3488191_3488917_-\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|182185
NZ_CP009049.1\|WP_001237171.1\|3493351_3495373_+\|UbiD-family-decarboxylase	unknown	unknown	gnl\|CDD\|223121
NZ_CP009049.1\|WP_000216310.1\|3484734_3485667_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP009049.1\|WP_000202715.1\|3485708_3487205_-\|gluconate-permease	unknown	unknown	gnl\|CDD\|308194
NZ_CP009049.1\|WP_000423337.1\|3492776_3493181_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP009049.1\|WP_001272638.1\|3496719_3497853_-\|murein-hydrolase-activator-NlpD	unknown	unknown	gnl\|CDD\|236782
NZ_CP009049.1\|WP_000081498.1\|3495664_3496657_-\|RNA-polymerase-sigma-factor-RpoS	unknown	unknown	gnl\|CDD\|235548
NZ_CP009049.1\|WP_000134246.1\|3499390_3500440_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP009049.1\|WP_000153636.1\|3488921_3489560_-\|aldolase	unknown	unknown	gnl\|CDD\|181241
NZ_CP009049.1\|WP_001221546.1\|3498648_3499410_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP009049.1\|WP_011233161.1\|3479953_3480280_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009049.1\|WP_000206951.1\|3490873_3491797_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NZ_CP009049.1\|WP_001005811.1\|3480438_3483006_+\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NZ_CP009049.1\|WP_000613181.1\|3491993_3492758_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP009049.1\|WP_000458339.1\|3479759_3479945_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009049.1\|WP_000222390.1\|3483438_3484647_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341046
NZ_CP009049.1\|WP_001070461.1\|3483061_3483442_-\|DUF4440-domain-containing-protein	unknown	unknown	gnl\|CDD\|226867
NZ_CP009049.1\|WP_000562964.1\|3495383_3495620_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009049.1\|WP_001165726.1\|3487201_3488152_-\|SDR-family-oxidoreductase	gnl\|CDD\|187549	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs. Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.4233e-123
NZ_CP009049.1\|WP_000253542.1\|3498028_3498655_-\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	gnl\|CDD\|178974	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase.	4.34083e-128
NZ_CP009049.1\|WP_001136881.1\|3488191_3488917_-\|HPr-family-phosphocarrier-protein	gnl\|CDD\|182185	PRK09989, PRK09989, HPr family phosphocarrier protein.	7.84966e-174
NZ_CP009049.1\|WP_001237171.1\|3493351_3495373_+\|UbiD-family-decarboxylase	gnl\|CDD\|223121	COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases [Coenzyme metabolism].	3.93864e-165
NZ_CP009049.1\|WP_000216310.1\|3484734_3485667_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.94418e-65
NZ_CP009049.1\|WP_000202715.1\|3485708_3487205_-\|gluconate-permease	gnl\|CDD\|308194	pfam02447, GntP_permease, GntP family permease. This is a family of integral membrane permeases that are involved in gluconate uptake. E. coli contains several members of this family including GntU, a low affinity transporter, and GntT, a high affinity transporter.	5.8908e-142
NZ_CP009049.1\|WP_000423337.1\|3492776_3493181_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	6.95929e-18
NZ_CP009049.1\|WP_001272638.1\|3496719_3497853_-\|murein-hydrolase-activator-NlpD	gnl\|CDD\|236782	PRK10871, nlpD, murein hydrolase activator NlpD.	0
NZ_CP009049.1\|WP_000081498.1\|3495664_3496657_-\|RNA-polymerase-sigma-factor-RpoS	gnl\|CDD\|235548	PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated.	0
NZ_CP009049.1\|WP_000134246.1\|3499390_3500440_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP009049.1\|WP_000153636.1\|3488921_3489560_-\|aldolase	gnl\|CDD\|181241	PRK08130, PRK08130, putative aldolase; Validated.	1.8461e-138
NZ_CP009049.1\|WP_001221546.1\|3498648_3499410_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	2.28081e-145
NZ_CP009049.1\|WP_000206951.1\|3490873_3491797_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	1.4157e-102
NZ_CP009049.1\|WP_001005811.1\|3480438_3483006_+\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NZ_CP009049.1\|WP_000613181.1\|3491993_3492758_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	2.46196e-93
NZ_CP009049.1\|WP_000222390.1\|3483438_3484647_-\|MFS-transporter	gnl\|CDD\|341046	cd17503, MFS_LmrB_MDR_like, Bacillus subtilis lincomycin resistance protein (LmrB) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including Bacillus subtilis lincomycin resistance protein LmrB, and several proteins from Escherichia coli such as the putative MDR transporters EmrB, MdtD, and YieQ. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.52998e-70
NZ_CP009049.1\|WP_001070461.1\|3483061_3483442_-\|DUF4440-domain-containing-protein	gnl\|CDD\|226867	COG4460, COG4460, Uncharacterized protein conserved in bacteria [Function unknown].	1.37709e-64

>NZ_CP009049.1|WP_000153636.1|3488921_3489560_-|aldolase
MTILAKEEHALREEMVRIAASFFQRGYATGSAGNLSLLLPDGNILATPTGSCLGNLDPQRLSKVDPQGEWLSGDKPSKEVRFHLALYRNNPCCKAVVHLHSTWSTALSCLEGLDPQNVIRPFTPYVVMRMGDIPLVPYYRPGDDRIARDLAALAARHQAFLLANHGPVVCGENLQEAANNTEELEETAKLIFILGERPIRYLTTEEIAQLRR
>NZ_CP009049.1|WP_001136881.1|3488191_3488917_-|HPr-family-phosphocarrier-protein
MPRFAAAAAAGFQAVEFLFPYGFAASEIKAQLSRHDLTLALFNTSAGDTAAGEWGRAALPGREHDARADIELALEYALALECEQVHIMAGVVPDGADGARYRATFIDNLRYAADRFAAHDKRILIEALSPGVKPGYLFSSQYQALGIAEEVDRPNVFIQLDTFHAQKVNGNLSHLIREYAGRYAHVQIASLPDRHEPDDGEINYPWLFRLFDDVGYRGWIGCEYQPRNTTQDGLGWFNAWR
>NZ_CP009049.1|WP_001165726.1|3487201_3488152_-|SDR-family-oxidoreductase
MQIIITGGGGFLGQKLASALLNSSLAFNELLLVDLKMPARLSDSPRLRCLEADLTQPGVLENVITANTSVVYHLAAIVSSHAEDDFDLGWKVNLDLTRQLLEACRRQPQKIRFVFSSSLAVYGGTLPECVTDTTALTPRSSYGAQKAACELLVNDYTRKGYVDGLALRLPTICVRPGKPNRAASSFVSAIIREPLQGETIVCPVSESLRLWISSPATVIHNLSLAATLPAPGEASSINLPGISVTVGEMLETLRQAGGQAARDRVTHQRDEGVEKIVASWPGRIDNQRALALGFVADKRFDDIIERFRQDDMEGRS
>NZ_CP009049.1|WP_000202715.1|3485708_3487205_-|gluconate-permease
MTSLPTPIIGLIVAVFVLVWLVLRTRVHALIAMLAAACIAGLLGGMGIDKTLSVITSGFGTTLGSIGLVIGLGVMMGRLLEVSGAAERIAWSFIKWLGKRREEWALAITGYIVSIPIFVDSAFVILYPVAKALAKSGKRSLLTLGVALAGGLAVTHHTVPPTPGPLGVAGIFNVDIGAMLLTGMALAVPCVIGIVFYAQWLDKRYPDFVPRTLNADEVNAALEQYNKEKEQKDLPSLTLSLLPIVVPIVLIFLKAICSTLATIEGWSGLATHPVVQAINFVGSPVIALAISVLLAVYTLVPRMDKHTTAERLEEGLQSAGIILLVTGAGGALGAILRDSGAGQQLAEQVANLPISPILIPFIVATLVRLIQGSGTVAMITAASISAPILAQIPGINMLLAAQAATMGSLFFGYFNDSLFWVVNRMMGVSDVKQQMVVWSVPTTIAWAIGGTGVALINLLFGSGGSWLDPLLPIVVLAAIMLWVRWQAQGIKDKLVVKD
>NZ_CP009049.1|WP_000216310.1|3484734_3485667_+|LysR-family-transcriptional-regulator
MTVKELAMLNLQRMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTSEFGEQVVIPVLAQFSQRHPDLRIRHMSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTILPVAAPQWLARNPVSSLESLAQAEWIIHERLPTPLRWTVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGSGVALLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFLRSQWDCGEHAPSS
>NZ_CP009049.1|WP_000222390.1|3483438_3484647_-|MFS-transporter
MTYRSKVAVVYLLGFFLDLINLFIASVAFPAMSVDLHTSISALAWVSNGYIAGLTLIVPFSAFLSRYLGARRLIIFSLILFSVAAAAAGFADSLHSLVFWRIVQGAGGGLLIPVGQALTWQQFEPHERAGVSSVVMMVALLAPACSPAIGGLLVETCGWRWIFFATLPVAVLTLLLAYCWLNAASTTMASARLLHLPLLTDRLLRFAMIVYLCVPGMFIGISVVGMFYLQNIAQLSPAAAGSLMLPWSIASFVAIMLTGRYFNRLGPRPLIIVGCLLQAAGILLLTNVTPATSHRVLMMIFALMGAGGSLCSSTAQSGAFLTIARRDMPDASALWNLNRQLSFFLGATLLTLLLNALQRVMSLEVAYRWTFIAAAGITLLPLIYAVCLNNRQALLCLKKERP
>NZ_CP009049.1|WP_001070461.1|3483061_3483442_-|DUF4440-domain-containing-protein
MNPYKDEIIHAHAAIENWLSKGVGSLEALIARFAVDFTMITPGGICLDYPALGAFFQAQRACRPGLVIVVEHIDLVAEWPEGAALRYRERQQLPGQAETVRWSTVILKRERGRIVWRHLHETTATA
>NZ_CP009049.1|WP_001005811.1|3480438_3483006_+|DNA-mismatch-repair-protein-MutS
MNESFDKDFSNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPATSKGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDGKGYGYATLDISSGRFRLSEPADRETMAAELQRTNPAELLYAEDFAEMALIEGRRGLRRRPLWEFEIDTARQQLNLQFGTRDLVGFGVENASRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVENTLAAVLDCTVTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQDTVSELQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQLPELHAQLETVGSAPVQALRKKMGDFAELRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEIRERERTGLDTLKVGYNAVHGYYIQISRGQSHLAPINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTDKPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVDGTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRLKSLV
>NZ_CP009049.1|WP_011233161.1|3479953_3480280_-|hypothetical-protein
MKTTLSQPFIINKLSINVKPALSRSGKIVFEANPAQKLYIVFDDHREAPAGFGVKASLTKKTYVIQRRVASSDRNVSEGRKPSSVLKVKVENVFDFPNIDETRQSAGN
>NZ_CP009049.1|WP_000458339.1|3479759_3479945_-|hypothetical-protein
MFATKRNHNKIKRETDASELKTVIKIVLHEGKPIHFATTVIVLYSDRYLELCDLYSSQAIE
>NZ_CP009049.1|WP_000206951.1|3490873_3491797_-|NAD(P)-dependent-oxidoreductase
MTTGTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGREAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGITLPGVTPEEPSC
>NZ_CP009049.1|WP_000613181.1|3491993_3492758_+|DeoR/GlpR-transcriptional-regulator
MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGVQSSTRVAHEPSHQIKTELATPQKAAIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVVTNDFVIADYLMDNSGCTIIHTGGAVCRENRSCVGEAAATLLRGLMIDQAFISASSWSVRGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALPLAEFNQIVTDDGLPESAIRALAKVDISLLMAKQ
>NZ_CP009049.1|WP_000423337.1|3492776_3493181_-|winged-helix-turn-helix-transcriptional-regulator
MELRNTAFHLLRQLFQQHTARWQHELPELTKPQYAVMRVIAEHPGIEQVDLTEAAVSTKATLAEMLSRMENRGLVKRENDPLDKRRRFVYLTAQGQTLLAAAIPLGDRVDDEFLGRLSAEEREQFTRLVRKMMT
>NZ_CP009049.1|WP_001237171.1|3493351_3495373_+|UbiD-family-decarboxylase
MRLIVGITGATGAPLGVELLQALRAIPDVETHLVMSKWAKTTIELETPYTPAEVAALADYCHSPADQAATISSGSFRTDGMIIIPCSMKTLAGVRAGYAEGLVGRAADVVLKEGRKLVLVPREMPLSTIHLENMLALSRMGVAIVPPMPAFYNLPQTVDDIIQHIVARVLDQFGLEHTRARRWQGLRQAANFSQENVIMAFDDLRSFLHALDQQGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFTDARVAMNTIGSWQNHAISLGLPPNTPVKKQIDEFIRRWDNFPVAPERRANPGWAENTVDGDAINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQNVGIYRMEVKGKRKLGLQPVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIATAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYHSKPIFESLYLGMPWTEIDYLMGPATCVPLYQQLKAEFPEVQAVNAMYTHGLLAIISTKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWALSSKVNPAGDLVQLPNMSVLELDPGSSPAGITDKLIIDATTPVAPDNRGHYSQPVVDLPETKAWAEKLTAMLANRK
>NZ_CP009049.1|WP_000562964.1|3495383_3495620_+|hypothetical-protein
MICPRCADAHIELMATSPVKGVWTVYQCQHCLYTWRDTEPLRRTSREHYPQAFRMTQKDIDDAPMVPSIPPLLAEDKR
>NZ_CP009049.1|WP_000081498.1|3495664_3496657_-|RNA-polymerase-sigma-factor-RpoS
MSQNTLKVHDLNEDAEFDENGVEAFDEKALSEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE
>NZ_CP009049.1|WP_001272638.1|3496719_3497853_-|murein-hydrolase-activator-NlpD
MSAGSTKFTVSRIAALSLVSLWLAGCTSSSNPPAPVTSVDSGSSSNTNSGMLITPPPKMGATTQQTPQQAPQIQPVQRPVTQPMQTQPVAEQPVQMENGRIVYNRQYGNIPKGSYTGGSTYTVKKGDTLFYIAWITGNDFRDLAQRNSISAPYSLNVGQTLQVGNASGTPITGGNAITQADAAQQGVVNRSAQNSTVAVASQPTITYSEGSGEQSANKMLPNNKPAGTVVTAPVTAPTVSTTEPNASSTSTSAPISAWRWPTDGKVIENFGASEGGNKGIDIAGSKGQAIVATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR
>NZ_CP009049.1|WP_000253542.1|3498028_3498655_-|protein-L-isoaspartate(D-aspartate)-O-methyltransferase
MVSGRVQALLEQLRAQGIRDELVLNALAAVPREKFIDEAFEHKAWENIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVHHVCSVERIKGLQWQARRRLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMAQLDEGGILVLPVGDEQQFLKRVRRRGGEFIIDTVEAVRFVPLVKGELA
>NZ_CP009049.1|WP_001221546.1|3498648_3499410_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALRKFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGLDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_CP009049.1|WP_000134246.1|3499390_3500440_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE

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Crispr_ID: NZ_CP009049_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009049_5

3506782-3507237

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

7 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas3

The CRISPR arrays of NZ_CP009049_5

>merge|NZ_CP009049|5|3506782-3507237|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGGCGCGGGGAACACGAATCATTCTGTCACGAACAATTATATTTTCTCGGTTTATCCCCGCTGGCGCGGGGAACACGACATTTGACACTATGCGCGATGATGCAATCGCGGTTTATCCCCGCTGGCGCGGGGAACACCGTTTACGTTTGCCGACGATTTAACTAAACAGCGGTTTATCCCCGCTGGCGCGGGGAACACAGCGCCGCCCTCGCGTAGAAAGTGTTCGTGTGCGGTTTATCCCCGCTGGCGCGGGGAACACCTCATTACGATGTGACGCAATACCGTGCTGTCCGGTTTATCCCCGCTGGCGCGGGGAACACAGCATTTTCTTTGCTGGCCCCCATTTGGTGTACGGTTTATCCCCGCTGGCGCGGGGAACACACGTAGCCGGTACAACTGACGCAGTAGACGTGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP009049|5|5|3506782-3507237|CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCATTCTGTCACGAACAATTATATTTTCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GACATTTGACACTATGCGCGATGATGCAATCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTTACGTTTGCCGACGATTTAACTAAACAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCCGCCCTCGCGTAGAAAGTGTTCGTGTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTCATTACGATGTGACGCAATACCGTGCTGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCATTTTCTTTGCTGGCCCCCATTTGGTGTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGTAGCCGGTACAACTGACGCAGTAGACGTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP009049|5|1|3506782-3507237|CRT
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCATTCTGTCACGAACAATTATATTTTCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GACATTTGACACTATGCGCGATGATGCAATCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTTACGTTTGCCGACGATTTAACTAAACAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCCGCCCTCGCGTAGAAAGTGTTCGTGTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTCATTACGATGTGACGCAATACCGTGCTGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCATTTTCTTTGCTGGCCCCCATTTGGTGTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGTAGCCGGTACAACTGACGCAGTAGACGTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP009049|5|1|3506843-3507237|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GACATTTGACACTATGCGCGATGATGCAATCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTTACGTTTGCCGACGATTTAACTAAACAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCCGCCCTCGCGTAGAAAGTGTTCGTGTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTCATTACGATGTGACGCAATACCGTGCTGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCATTTTCTTTGCTGGCCCCCATTTGGTGTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGTAGCCGGTACAACTGACGCAGTAGACGTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009049.1\|WP_000253542.1\|3498028_3498655_-\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	unknown	unknown	gnl\|CDD\|178974
NZ_CP009049.1\|WP_000517480.1\|3501644_3501956_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP009049.1\|WP_001118111.1\|3502146_3502503_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP009049.1\|WP_000666426.1\|3509238_3509964_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP009049.1\|WP_001145531.1\|3516645_3517599_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP009049.1\|WP_001219244.1\|3500436_3500916_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP009049.1\|WP_000134246.1\|3499390_3500440_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP009049.1\|WP_001670238.1\|3509973_3511032_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP009049.1\|WP_001290675.1\|3518496_3520209_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP009049.1\|WP_001221546.1\|3498648_3499410_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP009049.1\|WP_000118672.1\|3507644_3508535_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP009049.1\|WP_001173658.1\|3502520_3503126_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP009049.1\|WP_000080389.1\|3517686_3518421_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP009049.1\|WP_000372402.1\|3504561_3505470_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP009049.1\|WP_000741651.1\|3500915_3501626_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP009049.1\|WP_001092272.1\|3503112_3504552_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP009049.1\|WP_000062282.1\|3507321_3507615_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP009049.1\|WP_000192065.1\|3513566_3516266_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP009049.1\|WP_000935107.1\|3511054_3511657_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP009049.1\|WP_000281412.1\|3508534_3509239_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795

Protein	Function_ID	Function_description	E-value
NZ_CP009049.1\|WP_000253542.1\|3498028_3498655_-\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	gnl\|CDD\|178974	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase.	4.34083e-128
NZ_CP009049.1\|WP_000517480.1\|3501644_3501956_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP009049.1\|WP_001118111.1\|3502146_3502503_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.10351e-48
NZ_CP009049.1\|WP_000666426.1\|3509238_3509964_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.50859e-48
NZ_CP009049.1\|WP_001145531.1\|3516645_3517599_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP009049.1\|WP_001219244.1\|3500436_3500916_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_CP009049.1\|WP_000134246.1\|3499390_3500440_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP009049.1\|WP_001670238.1\|3509973_3511032_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	3.88788e-121
NZ_CP009049.1\|WP_001290675.1\|3518496_3520209_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP009049.1\|WP_001221546.1\|3498648_3499410_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	2.28081e-145
NZ_CP009049.1\|WP_000118672.1\|3507644_3508535_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	2.51774e-156
NZ_CP009049.1\|WP_001173658.1\|3502520_3503126_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.83357e-145
NZ_CP009049.1\|WP_000080389.1\|3517686_3518421_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	4.42567e-137
NZ_CP009049.1\|WP_000372402.1\|3504561_3505470_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP009049.1\|WP_000741651.1\|3500915_3501626_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.14969e-118
NZ_CP009049.1\|WP_001092272.1\|3503112_3504552_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP009049.1\|WP_000062282.1\|3507321_3507615_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.81067e-65
NZ_CP009049.1\|WP_000192065.1\|3513566_3516266_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	3.70349e-143
NZ_CP009049.1\|WP_000935107.1\|3511054_3511657_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	5.74874e-39
NZ_CP009049.1\|WP_000281412.1\|3508534_3509239_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	4.22526e-90

>NZ_CP009049.1|WP_000372402.1|3504561_3505470_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLETESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP009049.1|WP_001092272.1|3503112_3504552_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIASEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKMLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAICYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP009049.1|WP_001173658.1|3502520_3503126_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVMLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP009049.1|WP_001118111.1|3502146_3502503_-|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLTLMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP009049.1|WP_000517480.1|3501644_3501956_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP009049.1|WP_000741651.1|3500915_3501626_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKTAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGAIITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP009049.1|WP_001219244.1|3500436_3500916_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP009049.1|WP_000134246.1|3499390_3500440_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP009049.1|WP_001221546.1|3498648_3499410_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALRKFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGLDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_CP009049.1|WP_000253542.1|3498028_3498655_-|protein-L-isoaspartate(D-aspartate)-O-methyltransferase
MVSGRVQALLEQLRAQGIRDELVLNALAAVPREKFIDEAFEHKAWENIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVHHVCSVERIKGLQWQARRRLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMAQLDEGGILVLPVGDEQQFLKRVRRRGGEFIIDTVEAVRFVPLVKGELA
>NZ_CP009049.1|WP_000062282.1|3507321_3507615_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>NZ_CP009049.1|WP_000118672.1|3507644_3508535_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKLLSFVYDIADIIKFETVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSQPIAIPLPVA
>NZ_CP009049.1|WP_000281412.1|3508534_3509239_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHSLFLIETKPFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>NZ_CP009049.1|WP_000666426.1|3509238_3509964_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLASDEVGTLISQREYRCDGYWHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLRKGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>NZ_CP009049.1|WP_001670238.1|3509973_3511032_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>NZ_CP009049.1|WP_000935107.1|3511054_3511657_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYERKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKENISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERSRIRWANEYLSTSRGK
>NZ_CP009049.1|WP_000192065.1|3513566_3516266_+|CRISPR-associated-helicase/endonuclease-Cas3
MTQIEYLDYLCYWGKTDKSTENITCNYHLLAYHCLDVAACGEYIIKNNTFNSCNILKECNISGTNAENWIIWFLASHDIGKFARGFQKYAEFPDSPLVSPISGVSAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHGIPPDTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSAMPLKDYWPLACEKAQQAILRMPPLSQHSHYQDHRALFPFIQTLTPLQQRASELDISAPGAQLVVLEDVTGAGKTEAALILTHRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAEFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYTDHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQIVLVSDTGEASYYSKRFGLVG
>NZ_CP009049.1|WP_001145531.1|3516645_3517599_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRIAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLTCINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP009049.1|WP_000080389.1|3517686_3518421_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPEAYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP009049.1|WP_001290675.1|3518496_3520209_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKRESNFLRGTIAEDLNDGLTGGFHGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWKAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNLVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYSGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPDILASLGELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE

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Crispr_ID: NZ_CP009049_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009049_6

3523788-3523999

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

3 spacers

cas3,cse2gr11,cas7,cas5,cas6e

The CRISPR arrays of NZ_CP009049_6

>merge|NZ_CP009049|6|3523788-3523999|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCCCGCTGGCGCGGGGAACACACGGCAACGGATGCGACCGCCAGCGCGATCCCCGGTTTATCCCCGCTGGCGCGGGGAACACTGTTCGAGTTGCGCCGGTGATTTGAAATCTTCCGGTTTATCCCCGCTGGCGCGGGGAACACGATGGCCTGTTTTTCAACGAAAGAGAAGAATTCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP009049|6|6|3523788-3523999|CRISPRCasFinder
ACGGCTATCCCCGCTGGCGCGGGGAACAC	ACGGCAACGGATGCGACCGCCAGCGCGATCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTTCGAGTTGCGCCGGTGATTTGAAATCTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATGGCCTGTTTTTCAACGAAAGAGAAGAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP009049|6|2|3523788-3523999|CRT
ACGGCTATCCCCGCTGGCGCGGGGAACAC	ACGGCAACGGATGCGACCGCCAGCGCGATCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTTCGAGTTGCGCCGGTGATTTGAAATCTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATGGCCTGTTTTTCAACGAAAGAGAAGAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP009049|6|2|3523849-3523999|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTTCGAGTTGCGCCGGTGATTTGAAATCTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATGGCCTGTTTTTCAACGAAAGAGAAGAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009049.1\|WP_000210861.1\|3526483_3528121_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP009049.1\|WP_000210451.1\|3528348_3529149_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP009049.1\|WP_001079653.1\|3534916_3535453_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NZ_CP009049.1\|WP_001044464.1\|3533135_3533909_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NZ_CP009049.1\|WP_000666426.1\|3509238_3509964_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP009049.1\|WP_001145531.1\|3516645_3517599_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP009049.1\|WP_000842512.1\|3529756_3530344_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NZ_CP009049.1\|WP_000036734.1\|3525102_3526401_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP009049.1\|WP_000981791.1\|3530423_3533123_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
NZ_CP009049.1\|WP_001290675.1\|3518496_3520209_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP009049.1\|WP_000080389.1\|3517686_3518421_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP009049.1\|WP_000108313.1\|3522443_3522806_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP009049.1\|WP_000832400.1\|3534449_3534920_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NZ_CP009049.1\|WP_001670238.1\|3509973_3511032_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP009049.1\|WP_000935107.1\|3511054_3511657_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP009049.1\|WP_000210904.1\|3520208_3522008_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP009049.1\|WP_000192065.1\|3513566_3516266_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP009049.1\|WP_000178263.1\|3533928_3534435_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NZ_CP009049.1\|WP_001199962.1\|3524295_3524967_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP009049.1\|WP_000281412.1\|3508534_3509239_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795

Protein	Function_ID	Function_description	E-value
NZ_CP009049.1\|WP_000210861.1\|3526483_3528121_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP009049.1\|WP_000210451.1\|3528348_3529149_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP009049.1\|WP_001079653.1\|3534916_3535453_+\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	1.32282e-120
NZ_CP009049.1\|WP_001044464.1\|3533135_3533909_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NZ_CP009049.1\|WP_000666426.1\|3509238_3509964_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.50859e-48
NZ_CP009049.1\|WP_001145531.1\|3516645_3517599_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP009049.1\|WP_000842512.1\|3529756_3530344_+\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
NZ_CP009049.1\|WP_000036734.1\|3525102_3526401_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP009049.1\|WP_000981791.1\|3530423_3533123_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
NZ_CP009049.1\|WP_001290675.1\|3518496_3520209_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP009049.1\|WP_000080389.1\|3517686_3518421_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	4.42567e-137
NZ_CP009049.1\|WP_000108313.1\|3522443_3522806_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP009049.1\|WP_000832400.1\|3534449_3534920_+\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	2.82246e-98
NZ_CP009049.1\|WP_001670238.1\|3509973_3511032_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	3.88788e-121
NZ_CP009049.1\|WP_000935107.1\|3511054_3511657_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	5.74874e-39
NZ_CP009049.1\|WP_000210904.1\|3520208_3522008_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP009049.1\|WP_000192065.1\|3513566_3516266_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	3.70349e-143
NZ_CP009049.1\|WP_000178263.1\|3533928_3534435_+\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	2.32072e-105
NZ_CP009049.1\|WP_001199962.1\|3524295_3524967_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	4.95322e-154
NZ_CP009049.1\|WP_000281412.1\|3508534_3509239_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	4.22526e-90

>NZ_CP009049.1|WP_000108313.1|3522443_3522806_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP009049.1|WP_000210904.1|3520208_3522008_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKALKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIGLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLAGRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARCMAVDVEKALLEVIAEFGAMDIESADEYLSELRVERRYQRDVY
>NZ_CP009049.1|WP_001290675.1|3518496_3520209_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKRESNFLRGTIAEDLNDGLTGGFHGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWKAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNLVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYSGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPDILASLGELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP009049.1|WP_000080389.1|3517686_3518421_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPEAYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP009049.1|WP_001145531.1|3516645_3517599_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRIAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLTCINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP009049.1|WP_000192065.1|3513566_3516266_+|CRISPR-associated-helicase/endonuclease-Cas3
MTQIEYLDYLCYWGKTDKSTENITCNYHLLAYHCLDVAACGEYIIKNNTFNSCNILKECNISGTNAENWIIWFLASHDIGKFARGFQKYAEFPDSPLVSPISGVSAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHGIPPDTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSAMPLKDYWPLACEKAQQAILRMPPLSQHSHYQDHRALFPFIQTLTPLQQRASELDISAPGAQLVVLEDVTGAGKTEAALILTHRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAEFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYTDHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQIVLVSDTGEASYYSKRFGLVG
>NZ_CP009049.1|WP_000935107.1|3511054_3511657_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYERKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKENISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERSRIRWANEYLSTSRGK
>NZ_CP009049.1|WP_001670238.1|3509973_3511032_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>NZ_CP009049.1|WP_000666426.1|3509238_3509964_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLASDEVGTLISQREYRCDGYWHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLRKGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>NZ_CP009049.1|WP_000281412.1|3508534_3509239_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHSLFLIETKPFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>NZ_CP009049.1|WP_001199962.1|3524295_3524967_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLYSILAKIKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP009049.1|WP_000036734.1|3525102_3526401_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP009049.1|WP_000210861.1|3526483_3528121_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGAPTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP009049.1|WP_000210451.1|3528348_3529149_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP009049.1|WP_000842512.1|3529756_3530344_+|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NZ_CP009049.1|WP_000981791.1|3530423_3533123_+|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSASPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>NZ_CP009049.1|WP_001044464.1|3533135_3533909_+|fimbria/pilus-periplasmic-chaperone
MNKTNHFNRQALIATVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAAGLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NZ_CP009049.1|WP_000178263.1|3533928_3534435_+|fimbrial-protein
MTMLTRWKILVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDVSQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NZ_CP009049.1|WP_000832400.1|3534449_3534920_+|fimbrial-protein
MKRVLILTLLITRFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSAKALTTNVPGLGIELQQNGTVFPPGTSLTINESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NZ_CP009049.1|WP_001079653.1|3534916_3535453_+|fimbrial-protein
MNRIFQTTGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVVVTFQGVEDSTLPGLLALESSSIANGFAIGIETADQHPLIINASQGTEFMLAEGNTIINLQAWLQKTSGENIMPREFNASAMVNFEYQ

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Crispr_ID: NZ_CP009049_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009049_7

4435126-4435226

Orphan

Consensus_repeat	Method
CGCAAACGGCGGAGCTTCATGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009049_7

>merge|NZ_CP009049|7|4435126-4435226|CRISPRCasFinder
CGCAAACGGCGGAGCTTCATGCGCCAACGTGCGCAAATTGACCCGCCATCGTGAGGATTTGGCGGAACAGGTGCGATCGCAAACGGCGGAGCTTCATGCGC

>NZ_CP009049|7|7|4435126-4435226|CRISPRCasFinder
CGCAAACGGCGGAGCTTCATGCGC	CAACGTGCGCAAATTGACCCGCCATCGTGAGGATTTGGCGGAACAGGTGCGAT
CGCAAACGGCGGAGCTTCATGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009049.1\|WP_000266011.1\|4423951_4424689_-\|heme-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|273492
NZ_CP009049.1\|WP_000831330.1\|4447068_4447209_+\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|179004
NZ_CP009049.1\|WP_001307474.1\|4447548_4447806_+\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|178815
NZ_CP009049.1\|WP_000990037.1\|4424740_4425400_-\|heme-exporter-protein-CcmB	unknown	unknown	gnl\|CDD\|200083
NZ_CP009049.1\|WP_001053607.1\|4423266_4423746_-\|cytochrome-c-maturation-protein-CcmE	unknown	unknown	gnl\|CDD\|139376
NZ_CP009049.1\|WP_000790675.1\|4428229_4430782_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP009049.1\|WP_000253520.1\|4436708_4438046_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273326
NZ_CP009049.1\|WP_000724466.1\|4426014_4427415_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|224771
NZ_CP009049.1\|WP_039755070.1\|4445007_4446408_-\|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl\|CDD\|273037
NZ_CP009049.1\|WP_000704737.1\|4438130_4439279_-\|galactonate-dehydratase	unknown	unknown	gnl\|CDD\|184455
NZ_CP009049.1\|WP_000239725.1\|4447225_4447585_+\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|179327
NZ_CP009049.1\|WP_011233208.1\|4432085_4432778_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP009049.1\|WP_000060078.1\|4442681_4443755_-\|DNA-replication/repair-protein-RecF	unknown	unknown	gnl\|CDD\|273173
NZ_CP009049.1\|WP_000072043.1\|4440238_4442653_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl\|CDD\|237860
NZ_CP009049.1\|WP_001230254.1\|4430771_4431956_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP009049.1\|WP_001198740.1\|4439275_4439893_-\|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase	unknown	unknown	gnl\|CDD\|181670
NZ_CP009049.1\|WP_001202046.1\|4432750_4433791_-\|TMAO-reductase-system-periplasmic-protein-TorT	unknown	unknown	gnl\|CDD\|236801
NZ_CP009049.1\|WP_000673474.1\|4443902_4445003_-\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|235541
NZ_CP009049.1\|WP_000595421.1\|4427604_4428237_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP009049.1\|WP_000074110.1\|4423742_4423955_-\|heme-exporter-protein-CcmD	unknown	unknown	gnl\|CDD\|225656

Protein	Function_ID	Function_description	E-value
NZ_CP009049.1\|WP_000266011.1\|4423951_4424689_-\|heme-ABC-transporter-permease	gnl\|CDD\|273492	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC. This model describes the cyt c biogenesis protein encoded by ccmC in bacteria. It must be noted an arabidopsis, a tritcum and a piscum plant proteins were recognizable in the clade. Quite likely they are of organellar origin. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes, ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in the heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other].	2.03977e-92
NZ_CP009049.1\|WP_000831330.1\|4447068_4447209_+\|50S-ribosomal-protein-L34	gnl\|CDD\|179004	PRK00399, rpmH, 50S ribosomal protein L34; Reviewed.	1.7125e-11
NZ_CP009049.1\|WP_001307474.1\|4447548_4447806_+\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|178815	PRK00041, PRK00041, hypothetical protein; Validated.	1.15323e-42
NZ_CP009049.1\|WP_000990037.1\|4424740_4425400_-\|heme-exporter-protein-CcmB	gnl\|CDD\|200083	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other].	8.92474e-77
NZ_CP009049.1\|WP_001053607.1\|4423266_4423746_-\|cytochrome-c-maturation-protein-CcmE	gnl\|CDD\|139376	PRK13150, PRK13150, cytochrome c maturation protein CcmE.	6.55671e-111
NZ_CP009049.1\|WP_000790675.1\|4428229_4430782_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP009049.1\|WP_000253520.1\|4436708_4438046_-\|MFS-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.87007e-141
NZ_CP009049.1\|WP_000724466.1\|4426014_4427415_-\|c-type-cytochrome	gnl\|CDD\|224771	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism].	2.92577e-150
NZ_CP009049.1\|WP_039755070.1\|4445007_4446408_-\|chromosomal-replication-initiator-protein-DnaA	gnl\|CDD\|273037	TIGR00362, DnaA, chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP009049.1\|WP_000704737.1\|4438130_4439279_-\|galactonate-dehydratase	gnl\|CDD\|184455	PRK14017, PRK14017, galactonate dehydratase; Provisional.	0
NZ_CP009049.1\|WP_000239725.1\|4447225_4447585_+\|ribonuclease-P-protein-component	gnl\|CDD\|179327	PRK01732, rnpA, ribonuclease P; Reviewed.	3.94337e-73
NZ_CP009049.1\|WP_011233208.1\|4432085_4432778_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	5.31764e-136
NZ_CP009049.1\|WP_000060078.1\|4442681_4443755_-\|DNA-replication/repair-protein-RecF	gnl\|CDD\|273173	TIGR00611, DNA_replication_and_repair_protein_RecF, recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	3.54542e-172
NZ_CP009049.1\|WP_000072043.1\|4440238_4442653_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl\|CDD\|237860	PRK14939, gyrB, DNA gyrase subunit B; Provisional.	0
NZ_CP009049.1\|WP_001230254.1\|4430771_4431956_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP009049.1\|WP_001198740.1\|4439275_4439893_-\|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase	gnl\|CDD\|181670	PRK09140, PRK09140, 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed.	4.0634e-125
NZ_CP009049.1\|WP_001202046.1\|4432750_4433791_-\|TMAO-reductase-system-periplasmic-protein-TorT	gnl\|CDD\|236801	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional.	3.70956e-175
NZ_CP009049.1\|WP_000673474.1\|4443902_4445003_-\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|235541	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated.	0
NZ_CP009049.1\|WP_000595421.1\|4427604_4428237_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	1.43742e-79
NZ_CP009049.1\|WP_000074110.1\|4423742_4423955_-\|heme-exporter-protein-CcmD	gnl\|CDD\|225656	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion].	2.40713e-24

>NZ_CP009049.1|WP_001202046.1|4432750_4433791_-|TMAO-reductase-system-periplasmic-protein-TorT
MRALISFFFLIIIVSNVETASAETGLLHWTRADRAIPWRQTSVNASKPWKLCALYPSLKDSYWLSVNYGMQKAAKLYGVDLKVLEANGYRQLATQQQQMTQCREWGADAILLGSSTDRFPELERYAGNVPVIELVNMIHDASVATRIGLPWFQMGYLPGRFLVQWSKGKTLNVLLFPGPEEAGGSQEMVAGFRQAIKGSAINIVDIAWGDNDIEVQRNLLQEMLERHPDANVVAGSAIAAEAAMGEGRNLTTPLTIVSFYLTHQVYRGLKRGHILMALSDQMAWQGELAITQSIKVLQGQPVPENISPPVLILTHNNADSARVRRSLSPPGFRPVYLYQYTSEAKK
>NZ_CP009049.1|WP_011233208.1|4432085_4432778_+|two-component-system-response-regulator-TorR
MSHHIVIVEDEPVTQARLQAYFEQEGYRVSVTDSGAGLRDIMEHEHVSLILLDINLPDENGLMLTRALRERSTVGIILVTGRCDQIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARPTPQNASENCYMFSGYCLNVMNHTLEHNGEAIKLTRAEYELLLAFVTNPGKVLHRERLLRMLSARRVETPDLRTIDVLVRRLRHKIMPELLVTQHGEGYFLASEVY
>NZ_CP009049.1|WP_001230254.1|4430771_4431956_-|pentaheme-c-type-cytochrome-TorC
MRKLWRALLRPSARWSILALVIVGIVIGVALIVLPHVGIKLTSTTEFCVSCHSMQPVYQEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDLYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQNPEAARQMKIAAKENQSCIDCHKGIAHQLPDMSSGFRKQFDELRASASTHNDGDTLYSLDIKPIYAAKGDKEPAGSLLPASEVKVLKRDGDWLQVQIEGWTETDGRQRVLTQLPGKRIFVASIRGDVQQHVKTLEETTVAATNTQWSKLQATAWMQKGDMVNDIKPIWAYADSLYNGTCNQCHGAPDKAHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTTNTPHSDKGEHNEK
>NZ_CP009049.1|WP_000790675.1|4428229_4430782_-|trimethylamine-N-oxide-reductase-TorA
MKNKDSLHVSRRRFLAQLGGLTVAGMLGPSLLTPRSARAADAVAPGAATKEGILTGSHWGAIRATVVDGRFVAAKPFEQDKYPSKMIAGLPDHVHNAARIRYPMVRVDWMRKGHQSDTSQRGDNRFVRVSWDEALDLFYQELERVQKTYGPSALLTASGWQSTGMFHNASGMLARAIALYGNSVSTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDMVKNQQANWWCPDHDVYQYYEQLKEKVASGAISVISIDPVVTSTHDYLGRDKVKHIAINPQTDVPLQLALAHTLYSEKLYDKNFLDNYCVGFDQFLPYLLGEKDGQPKDAAWAEKLCGIDADTIRALARQMAGDRTQIIAGWCVQRMQHGEQWSWMVVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGIILSGFSGSTTVPPVHDSTDYKGYSSTIPIARFMDAILEPGKVINWNGKSVKLPPLKMCVFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQFGNHSNRGIIAMKQVVSPQFEARNDFDIFRDLCRRFNREAAFTEGLDEMGWLKRIWQEGSQQGKGRGIHLPTFEVFWNQQEYIEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMQYDDCQGHPMWFEKIERSHGGPGSQRWPLHLQSVHPDFRLHSQLCESETLRQQYTVGGKEPVFINPQDASARGIRNGDIVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGDINALCKYGNPNVLTLDIGTSQLAQATSAHTTLVEIEKYTGPMDNVTAFNGPVEMVAQCEYVPASQGNPHD
>NZ_CP009049.1|WP_000595421.1|4427604_4428237_-|molecular-chaperone-TorD
MIKQPALAQEQYACVYAWLALLFFREVDDEGLIQLQSAEIADWLALLKRQPALAASVALLEQKIAALSLRQDAQLELAADFCGLFLMTDKKSALPYASQYPQQEPGMIKHLLLEAGMEVNDDFKEPTDHLAIYLELLSHLHFSLGESFQQRRMNKLRQKTLSSLLEWLPEFTNNCLKHDPYGFYAALSQLLLAIVRFDDGKEDLSIVAAE
>NZ_CP009049.1|WP_000724466.1|4426014_4427415_-|c-type-cytochrome
MKKITLYATTVITVGLLCYLGLSGYVWYYDKQRSKKSDVQASVVGENNKILGYFREKGCDYCHTPSAELPFYSSFPVAKQLMDYDIQLGYKSFNLEAVRAALIADTPVPQSELNKIEWVMQHQTMPPTRYVALHWAGGVSDKERTDILNWIADQRERNYASADTDAAHRNEPVQPIPRNIPVDAKKVDLGFRLYHDERLSGDSTISCAHCHAINAGGVDGRKTSIGVGGAVGPINAPTVFNSVFNIEQFWDGRAATLQEQAGGPPLNPIEMASKSWDEIISKLDKDPVLKKDFQAVYPQGFTGENITDAIAEFEKTLITPDSAFDKWLRGDENALTEQQKHGYQLFKENKCATCHGGIILGGRSFEPLGLKRDFNFGEITAADIGRMNVTKEVRDKLRQKVPGLRNVALTAPYFHRGDVPTLDGAVKLMLRYQVGTDLPQNDIDDIVAFLESLTGVYTPYQPEYAQ
>NZ_CP009049.1|WP_000990037.1|4424740_4425400_-|heme-exporter-protein-CcmB
MMWRVFCLELRVAFRHGADIAGPLWFFLMVITLFPLSVGPQPQLLARIAPGIIQVAALLASLLALERLFRDDLQDGSLEQLMLLPVPLPAVVLAKVLAHWAVTGLPLMMLSPLVALLLGMDVYGWKIMALTLLLGTPALGFLAAPGVALTAGLRRGGVLLGILVLPLSVPVLIFATAAMDAASMHLPADGYLAVLGALLAGSATLSPFATAAALRISTQ
>NZ_CP009049.1|WP_000266011.1|4423951_4424689_-|heme-ABC-transporter-permease
MWKTLHQLAAPPRLYQICGRLVPWLAAAGIIVLATGWVRGFGFAPADYQQGESYRIMYLHVPAAIWSMGIYAAMAVAAFTGLVWQMKMASLAVAAMAPVGAVYTFIALVTGAAWGKPMWGTWWVWDARLTSELVLLFLYAGVIALWHAFDDRKMAGRAAGILVLVGVVNLPVIHYSVEWWNTLHQGSTRMQQSIDPAMRSPLRWAIAGFLLLFMTLALMRMRNLILLMEKRRPWVSELILKRGHR
>NZ_CP009049.1|WP_000074110.1|4423742_4423955_-|heme-exporter-protein-CcmD
MSPAFSSWSDFFAMGGYAFFVWLAVAMTVAPLALLALHTVLQRRAILRGVAQQRAREARMRAAQAQQEAA
>NZ_CP009049.1|WP_001053607.1|4423266_4423746_-|cytochrome-c-maturation-protein-CcmE
MNLRRKNRLWVVCAVLAGLALTTALVLYALRANIDLFYTPGEILYGKRETQQLPAVGQRLRVGGMVMPGSVRRDPDSLKVNFSLYDAEGSVTVSYEGILPDLFREGQGVVVQGTLEKGNHVLAHEVLAKHDENYTPPEVEKAMQENHRRPQRADKDTSS
>NZ_CP009049.1|WP_000253520.1|4436708_4438046_-|MFS-transporter
MVSGLAMPRIWRQMTMDISVTAAQPGRRRYLTLVMIFITVVICYVDRANLAVASMHIQKEFGITKAEMGYVFSAFAWLYTLCQIPGGWFLDRIGSRLTYFIAIFGWSVATLLQGFATGLLSLIGLRAITGIFEAPAFPANNRMVTSWFPEHERASAVGFYTSGQFVGLAFLTPLLIWIQEMLSWHWVFIVTGGIGIIWSLIWFKVYQPPRLTKSLSQAELEYIRDGGGLVDGDAPAKKEARQPLTKADWKLVFHRKLVGVYLGQFAVNSTLWFFLTWFPNYLTQEKGITALKAGFMTTVPFLAAFFGVLLSGWLADKLVKKGFSLGVARKTPIICGLLISTCIMGANYTNDPFWIMALMAIAFFGNGFASITWSLISSLAPMRLIGLTGGMFNFIGGLGGISVPLVIGYLAQSYGFAPALVYISVVALLGALSYILLVGDVKRVG
>NZ_CP009049.1|WP_000704737.1|4438130_4439279_-|galactonate-dehydratase
MKITHITTYRLPPRWMFLKIETDEGVVGWGEPVIEGRARTVEAAVHEFADYLIGKDPARINDLWQVMYRAGFYRGGPIMMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVIDGIEKLRGIGFDTFKLNGCEEMGVIDNSRAVDAAVNTVAQIREAFGSEIEFGLDFHGRVSAPMAKVLIKELEPYRPLFIEEPVLAEQAEYYPRLAAQTHIPIAAGERMFSRFEFKRVLDAGGLGILQPDLSHAGGITECYKIAGMAEAYDVALAPHCPLGPIALAACLHIDFVSRNAVFQEQSMGIHYNKGAELLDFVKNKEDFSMDGGFFKPLTKPGLGVDIDEARVIELSKSAPDWSNPLWRHADGSVAEW
>NZ_CP009049.1|WP_001198740.1|4439275_4439893_-|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase
MQWQTNLPLIAILRGITPDDALAHVGAVVDAGFDAIEIPLNSPQWEKSISSVVKAYGGRALIGAGTVLKPEQVDQLAGMGCKLIVTPNIQPEVIRRAASYGMTVCPGCATATEAFAALDAGAQALKIFPSSAFGPGYISALKAVLPPDVPLFAVGGVTPENLAQWIKAGCVGAGLGSDLYRAGQSVERTAQQTAAFVNAYREAVK
>NZ_CP009049.1|WP_000072043.1|4440238_4442653_-|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVVTIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGIEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHANAHAPALSGEALEKLVSEYNATQKMIGRMERRFPKALLKELVYQPTLTEADLSDEQTVTRWVNALITELNEKEQHGSQWKFDVHTNTEQNLFEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICTLGEKLRGLIEEDAFIERGERRQPVTSFEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI
>NZ_CP009049.1|WP_000060078.1|4442681_4443755_-|DNA-replication/repair-protein-RecF
MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQEAFVLHGRLQGEEREMSIGLTKDKQGDSKVRIDGTDGHKIAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPWDKELIPLAEQISTWRAEYSSAIAQDMADTCQQFLPEFSLTFSFQRGWEKETDYADVLERSFERDRMLTYTAHGPHKADFRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD
>NZ_CP009049.1|WP_000673474.1|4443902_4445003_-|DNA-polymerase-III-subunit-beta
MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLSQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVCSMPLEASLPSHSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKCETVRIMLTDSVSSVQIEDAASQSAAYVVMPMRL
>NZ_CP009049.1|WP_039755070.1|4445007_4446408_-|chromosomal-replication-initiator-protein-DnaA
MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNINGLLNTFCGADAPQLRFEVGTKPVTQTLKTPVHNVVAPAQTTTAQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDICLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS
>NZ_CP009049.1|WP_000831330.1|4447068_4447209_+|50S-ribosomal-protein-L34
MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK
>NZ_CP009049.1|WP_000239725.1|4447225_4447585_+|ribonuclease-P-protein-component
MVKLAFPRELRLLTPAHFTFVFQQPQRAGTPQITILGRLNSLGHPRIGLTVAKKNVRRAHERNRIKRLTRESFRLRQHELPAMDFVVVAKKGVADLDNRALSEALEKLWRRHCRLARGS
>NZ_CP009049.1|WP_001307474.1|4447548_4447806_+|membrane-protein-insertion-efficiency-factor-YidD
MAPPLSPGSRVLIALIRVYQRLISPLLGPHCRFTPTCSSYGIEALRRFGVIKGSWLTVKRVLKCHPLHPGGDDPVPPGPFDTREH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009049_3	3.1\|3132016\|37\|NZ_CP009049\|CRISPRCasFinder	3132016-3132052	37	NC_011802	Salmonella enterica bacteriophage SE1, complete genome	15039-15075	2	0.946
NZ_CP009049_3	3.1\|3132016\|37\|NZ_CP009049\|CRISPRCasFinder	3132016-3132052	37	CP051272	Salmonella phage SW-70, complete genome	35832-35868	2	0.946
NZ_CP009049_3	3.1\|3132016\|37\|NZ_CP009049\|CRISPRCasFinder	3132016-3132052	37	CP051278	Salmonella phage ST-87, complete genome	25848-25884	2	0.946
NZ_CP009049_3	3.1\|3132016\|37\|NZ_CP009049\|CRISPRCasFinder	3132016-3132052	37	CP051288	Salmonella phage ST-29, complete genome	38690-38726	2	0.946
NZ_CP009049_3	3.1\|3132016\|37\|NZ_CP009049\|CRISPRCasFinder	3132016-3132052	37	MW013502	Salmonella virus L cI-40 13-am43, complete genome	31677-31713	2	0.946
NZ_CP009049_3	3.1\|3132016\|37\|NZ_CP009049\|CRISPRCasFinder	3132016-3132052	37	CP051285	Salmonella phage ST-32, complete genome	31784-31820	2	0.946
NZ_CP009049_3	3.1\|3132016\|37\|NZ_CP009049\|CRISPRCasFinder	3132016-3132052	37	NC_004348	Enterobacteria phage ST64T, complete genome	14879-14915	2	0.946
NZ_CP009049_3	3.1\|3132016\|37\|NZ_CP009049\|CRISPRCasFinder	3132016-3132052	37	MW013503	Salmonella virus L cII-101, complete genome	31678-31714	2	0.946
NZ_CP009049_3	3.1\|3132016\|37\|NZ_CP009049\|CRISPRCasFinder	3132016-3132052	37	NC_014900	Salmonella phage ST160, complete genome	15107-15143	2	0.946
NZ_CP009049_3	3.1\|3132016\|37\|NZ_CP009049\|CRISPRCasFinder	3132016-3132052	37	AY052766	Salmonella typhimurium bacteriophage ST64T, complete genome	14879-14915	2	0.946
NZ_CP009049_3	3.1\|3132016\|37\|NZ_CP009049\|CRISPRCasFinder	3132016-3132052	37	MF188997	Salmonella phage vB_SalP_PM43, complete genome	14774-14810	2	0.946
NZ_CP009049_4	4.1\|3490398\|26\|NZ_CP009049\|CRISPRCasFinder	3490398-3490423	26	NZ_CP034782	Pseudomonas sp. MPC6 plasmid pMPC6-328K, complete sequence	27962-27987	4	0.846
NZ_CP009049_4	4.1\|3490398\|26\|NZ_CP009049\|CRISPRCasFinder	3490398-3490423	26	AP014208	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C80-MedDCM-OCT-S37-C279, * SEQUENCING IN PROGRESS *	1057-1082	4	0.846
NZ_CP009049_4	4.1\|3490398\|26\|NZ_CP009049\|CRISPRCasFinder	3490398-3490423	26	NZ_CP035512	Haematobacter massiliensis strain OT1 plasmid pOT1-2, complete sequence	135146-135171	5	0.808
NZ_CP009049_6	6.1\|3523817\|32\|NZ_CP009049\|CRISPRCasFinder,CRT	3523817-3523848	32	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	112052-112083	5	0.844
NZ_CP009049_6	6.1\|3523817\|32\|NZ_CP009049\|CRISPRCasFinder,CRT	3523817-3523848	32	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	224971-225002	5	0.844
NZ_CP009049_6	6.1\|3523817\|32\|NZ_CP009049\|CRISPRCasFinder,CRT	3523817-3523848	32	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	90792-90823	5	0.844
NZ_CP009049_6	6.1\|3523817\|32\|NZ_CP009049\|CRISPRCasFinder,CRT	3523817-3523848	32	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	271400-271431	6	0.812
NZ_CP009049_6	6.1\|3523817\|32\|NZ_CP009049\|CRISPRCasFinder,CRT	3523817-3523848	32	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	654402-654433	7	0.781
NZ_CP009049_6	6.3\|3523939\|32\|NZ_CP009049\|CRISPRCasFinder,CRT,PILER-CR	3523939-3523970	32	NZ_CP014208	Pantoea ananatis strain R100 plasmid, complete sequence	64395-64426	7	0.781
NZ_CP009049_6	6.1\|3523817\|32\|NZ_CP009049\|CRISPRCasFinder,CRT	3523817-3523848	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2052295-2052326	8	0.75
NZ_CP009049_6	6.1\|3523817\|32\|NZ_CP009049\|CRISPRCasFinder,CRT	3523817-3523848	32	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343727-343758	8	0.75
NZ_CP009049_5	5.2\|3506872\|32\|NZ_CP009049\|CRISPRCasFinder,CRT,PILER-CR	3506872-3506903	32	NZ_CP048637	Rhizobium oryzihabitans strain M15 plasmid p5, complete sequence	43437-43468	9	0.719
NZ_CP009049_5	5.2\|3506872\|32\|NZ_CP009049\|CRISPRCasFinder,CRT,PILER-CR	3506872-3506903	32	NZ_CP048639	Rhizobium oryzihabitans strain M15 plasmid p7, complete sequence	54880-54911	9	0.719
NZ_CP009049_6	6.3\|3523939\|32\|NZ_CP009049\|CRISPRCasFinder,CRT,PILER-CR	3523939-3523970	32	NC_017533	Pantoea ananatis AJ13355 plasmid pEA320, complete sequence	108523-108554	9	0.719
NZ_CP009049_6	6.3\|3523939\|32\|NZ_CP009049\|CRISPRCasFinder,CRT,PILER-CR	3523939-3523970	32	NC_016817	Pantoea ananatis LMG 5342 plasmid pPANA10, complete sequence	2104-2135	9	0.719
NZ_CP009049_6	6.3\|3523939\|32\|NZ_CP009049\|CRISPRCasFinder,CRT,PILER-CR	3523939-3523970	32	NZ_CP020944	Pantoea ananatis strain PNA 97-1R plasmid unamed1, complete sequence	2104-2135	9	0.719
NZ_CP009049_6	6.3\|3523939\|32\|NZ_CP009049\|CRISPRCasFinder,CRT,PILER-CR	3523939-3523970	32	NC_017553	Pantoea ananatis PA13 plasmid PAGR_p, complete sequence	2204-2235	9	0.719
NZ_CP009049_6	6.3\|3523939\|32\|NZ_CP009049\|CRISPRCasFinder,CRT,PILER-CR	3523939-3523970	32	NZ_CP035036	Pantoea ananatis strain NN08200 plasmid unnamed2, complete sequence	264500-264531	9	0.719
NZ_CP009049_6	6.3\|3523939\|32\|NZ_CP009049\|CRISPRCasFinder,CRT,PILER-CR	3523939-3523970	32	MH552514	Siphoviridae sp. isolate ctba45, complete genome	4692-4723	9	0.719
NZ_CP009049_5	5.3\|3506933\|32\|NZ_CP009049\|CRISPRCasFinder,CRT,PILER-CR	3506933-3506964	32	NZ_CP019739	Lactobacillus brevis strain TMW 1.2108 plasmid pl12108-5, complete sequence	3689-3720	10	0.688
NZ_CP009049_5	5.3\|3506933\|32\|NZ_CP009049\|CRISPRCasFinder,CRT,PILER-CR	3506933-3506964	32	NZ_CP030354	Novosphingobium sp. P6W plasmid pP6W1, complete sequence	379454-379485	10	0.688

1. spacer 3.1|3132016|37|NZ_CP009049|CRISPRCasFinder matches to NC_011802 (Salmonella enterica bacteriophage SE1, complete genome) position: , mismatch: 2, identity: 0.946

cattcgctgtgagccgcgtcattactgttgtttgcgt	CRISPR spacer
cattcgctgtgatccgcgtcattactggtgtttgcgt	Protospacer
************ ************** *********

2. spacer 3.1|3132016|37|NZ_CP009049|CRISPRCasFinder matches to CP051272 (Salmonella phage SW-70, complete genome) position: , mismatch: 2, identity: 0.946

cattcgctgtgagccgcgtcattactgttgtttgcgt	CRISPR spacer
cattcgctgtgatccgcgtcattactggtgtttgcgt	Protospacer
************ ************** *********

3. spacer 3.1|3132016|37|NZ_CP009049|CRISPRCasFinder matches to CP051278 (Salmonella phage ST-87, complete genome) position: , mismatch: 2, identity: 0.946

cattcgctgtgagccgcgtcattactgttgtttgcgt	CRISPR spacer
cattcgctgtgatccgcgtcattactggtgtttgcgt	Protospacer
************ ************** *********

4. spacer 3.1|3132016|37|NZ_CP009049|CRISPRCasFinder matches to CP051288 (Salmonella phage ST-29, complete genome) position: , mismatch: 2, identity: 0.946

cattcgctgtgagccgcgtcattactgttgtttgcgt	CRISPR spacer
cattcgctgtgatccgcgtcattactggtgtttgcgt	Protospacer
************ ************** *********

5. spacer 3.1|3132016|37|NZ_CP009049|CRISPRCasFinder matches to MW013502 (Salmonella virus L cI-40 13-am43, complete genome) position: , mismatch: 2, identity: 0.946

cattcgctgtgagccgcgtcattactgttgtttgcgt	CRISPR spacer
catttgctgtgagccgcgtcattactggtgtttgcgt	Protospacer
****.********************** *********

6. spacer 3.1|3132016|37|NZ_CP009049|CRISPRCasFinder matches to CP051285 (Salmonella phage ST-32, complete genome) position: , mismatch: 2, identity: 0.946

cattcgctgtgagccgcgtcattactgttgtttgcgt	CRISPR spacer
cattcgctgtgatccgcgtcattactggtgtttgcgt	Protospacer
************ ************** *********

7. spacer 3.1|3132016|37|NZ_CP009049|CRISPRCasFinder matches to NC_004348 (Enterobacteria phage ST64T, complete genome) position: , mismatch: 2, identity: 0.946

cattcgctgtgagccgcgtcattactgttgtttgcgt	CRISPR spacer
catttgctgtgagccgcgtcattactggtgtttgcgt	Protospacer
****.********************** *********

8. spacer 3.1|3132016|37|NZ_CP009049|CRISPRCasFinder matches to MW013503 (Salmonella virus L cII-101, complete genome) position: , mismatch: 2, identity: 0.946

cattcgctgtgagccgcgtcattactgttgtttgcgt	CRISPR spacer
catttgctgtgagccgcgtcattactggtgtttgcgt	Protospacer
****.********************** *********

9. spacer 3.1|3132016|37|NZ_CP009049|CRISPRCasFinder matches to NC_014900 (Salmonella phage ST160, complete genome) position: , mismatch: 2, identity: 0.946

cattcgctgtgagccgcgtcattactgttgtttgcgt	CRISPR spacer
cattcgctgtgatccgcgtcattactggtgtttgcgt	Protospacer
************ ************** *********

10. spacer 3.1|3132016|37|NZ_CP009049|CRISPRCasFinder matches to AY052766 (Salmonella typhimurium bacteriophage ST64T, complete genome) position: , mismatch: 2, identity: 0.946

cattcgctgtgagccgcgtcattactgttgtttgcgt	CRISPR spacer
catttgctgtgagccgcgtcattactggtgtttgcgt	Protospacer
****.********************** *********

11. spacer 3.1|3132016|37|NZ_CP009049|CRISPRCasFinder matches to MF188997 (Salmonella phage vB_SalP_PM43, complete genome) position: , mismatch: 2, identity: 0.946

cattcgctgtgagccgcgtcattactgttgtttgcgt	CRISPR spacer
catttgctgtgagccgcgtcattactggtgtttgcgt	Protospacer
****.********************** *********

12. spacer 4.1|3490398|26|NZ_CP009049|CRISPRCasFinder matches to NZ_CP034782 (Pseudomonas sp. MPC6 plasmid pMPC6-328K, complete sequence) position: , mismatch: 4, identity: 0.846

ctgcgcttccatcagacgcggcaggt	CRISPR spacer
cagttcttccatcagacgcggcaggc	Protospacer
* *. ********************.

13. spacer 4.1|3490398|26|NZ_CP009049|CRISPRCasFinder matches to AP014208 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C80-MedDCM-OCT-S37-C279, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 4, identity: 0.846

ctgcgcttccatcagacgcggcaggt	CRISPR spacer
ctccgcttccatctgacgcggcagac	Protospacer
** ********** **********..

14. spacer 4.1|3490398|26|NZ_CP009049|CRISPRCasFinder matches to NZ_CP035512 (Haematobacter massiliensis strain OT1 plasmid pOT1-2, complete sequence) position: , mismatch: 5, identity: 0.808

ctgcgcttccatcagacgcggcaggt	CRISPR spacer
atgcgcttccagcagacgcggcaccg	Protospacer
 ********** ***********

15. spacer 6.1|3523817|32|NZ_CP009049|CRISPRCasFinder,CRT matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 5, identity: 0.844

-acggcaacggatgcgaccgccagcgcgatccc	CRISPR spacer
tgcggc-acggatgaggccgccagcgcgatctc	Protospacer
 .**** ******* *.**************.*

16. spacer 6.1|3523817|32|NZ_CP009049|CRISPRCasFinder,CRT matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

-acggcaacggatgcgaccgccagcgcgatccc	CRISPR spacer
tgcggc-acggatgaggccgccagcgcgatctc	Protospacer
 .**** ******* *.**************.*

17. spacer 6.1|3523817|32|NZ_CP009049|CRISPRCasFinder,CRT matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.844

-acggcaacggatgcgaccgccagcgcgatccc	CRISPR spacer
tgcggc-acggatgaggccgccagcgcgatctc	Protospacer
 .**** ******* *.**************.*

18. spacer 6.1|3523817|32|NZ_CP009049|CRISPRCasFinder,CRT matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 6, identity: 0.812

-acggcaacggatgcgaccgccagcgcgatccc	CRISPR spacer
tgcggc-acggatgaggccgccagcgcgatctg	Protospacer
 .**** ******* *.**************.

19. spacer 6.1|3523817|32|NZ_CP009049|CRISPRCasFinder,CRT matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 7, identity: 0.781

-acggcaacggatgcgaccgccagcgcgatccc	CRISPR spacer
cgcgccga-ggaagcgaccgccagcgcgagccg	Protospacer
 .** *.* *** **************** **

20. spacer 6.3|3523939|32|NZ_CP009049|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014208 (Pantoea ananatis strain R100 plasmid, complete sequence) position: , mismatch: 7, identity: 0.781

gatggcctgtttttcaacgaaagagaagaatt	CRISPR spacer
catatcccgtttttcaacgaaagaaaagggtt	Protospacer
 **. **.****************.***..**

21. spacer 6.1|3523817|32|NZ_CP009049|CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.75

acggcaacggatgcgaccgccagcgcgatccc	CRISPR spacer
cgggccgaggatgcgaccgcgagcgcgagccg	Protospacer
  *** . ************ ******* **

22. spacer 6.1|3523817|32|NZ_CP009049|CRISPRCasFinder,CRT matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 8, identity: 0.75

acggcaac-----ggatgcgaccgccagcgcgatccc	CRISPR spacer
-----aacttcctcgaagcgaccgccaccgcgatccc	Protospacer
     ***      ** ********** *********

23. spacer 5.2|3506872|32|NZ_CP009049|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048637 (Rhizobium oryzihabitans strain M15 plasmid p5, complete sequence) position: , mismatch: 9, identity: 0.719

gacatttgacactatgcgcgatgatgcaatcg	CRISPR spacer
gcgctgatccacgatgcgcgaggatgcaatcg	Protospacer
*   *    *** ******** **********

24. spacer 5.2|3506872|32|NZ_CP009049|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048639 (Rhizobium oryzihabitans strain M15 plasmid p7, complete sequence) position: , mismatch: 9, identity: 0.719

gacatttgacactatgcgcgatgatgcaatcg	CRISPR spacer
gcgctgatccacgatgcgcgaggatgcaatcg	Protospacer
*   *    *** ******** **********

25. spacer 6.3|3523939|32|NZ_CP009049|CRISPRCasFinder,CRT,PILER-CR matches to NC_017533 (Pantoea ananatis AJ13355 plasmid pEA320, complete sequence) position: , mismatch: 9, identity: 0.719

gatggcctgtttttcaacgaaagagaagaatt	CRISPR spacer
catatcccgtttttcaacgaaagaaaagggga	Protospacer
 **. **.****************.***..

26. spacer 6.3|3523939|32|NZ_CP009049|CRISPRCasFinder,CRT,PILER-CR matches to NC_016817 (Pantoea ananatis LMG 5342 plasmid pPANA10, complete sequence) position: , mismatch: 9, identity: 0.719

gatggcctgtttttcaacgaaagagaagaatt	CRISPR spacer
catatcccgtttttcaacgaaagaaaagggga	Protospacer
 **. **.****************.***..

27. spacer 6.3|3523939|32|NZ_CP009049|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020944 (Pantoea ananatis strain PNA 97-1R plasmid unamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gatggcctgtttttcaacgaaagagaagaatt	CRISPR spacer
catatcccgtttttcaacgaaagaaaagggaa	Protospacer
 **. **.****************.***..

28. spacer 6.3|3523939|32|NZ_CP009049|CRISPRCasFinder,CRT,PILER-CR matches to NC_017553 (Pantoea ananatis PA13 plasmid PAGR_p, complete sequence) position: , mismatch: 9, identity: 0.719

gatggcctgtttttcaacgaaagagaagaatt	CRISPR spacer
catatcccgtttttcaacgaaagaaaagggga	Protospacer
 **. **.****************.***..

29. spacer 6.3|3523939|32|NZ_CP009049|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035036 (Pantoea ananatis strain NN08200 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gatggcctgtttttcaacgaaagagaagaatt	CRISPR spacer
catatcccgtttttcaacgaaagaaaagggga	Protospacer
 **. **.****************.***..

30. spacer 6.3|3523939|32|NZ_CP009049|CRISPRCasFinder,CRT,PILER-CR matches to MH552514 (Siphoviridae sp. isolate ctba45, complete genome) position: , mismatch: 9, identity: 0.719

gatggcctgtttttcaacgaaagagaagaatt	CRISPR spacer
cagaatatctttttcaaaaaaagagaagaatt	Protospacer
 * ... * ******** .*************

31. spacer 5.3|3506933|32|NZ_CP009049|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019739 (Lactobacillus brevis strain TMW 1.2108 plasmid pl12108-5, complete sequence) position: , mismatch: 10, identity: 0.688

cgtttacgtttgccgacgatttaactaaacag	CRISPR spacer
agggattgtttgccgactatctaactaaacta	Protospacer
 *    .********** **.********* .

32. spacer 5.3|3506933|32|NZ_CP009049|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030354 (Novosphingobium sp. P6W plasmid pP6W1, complete sequence) position: , mismatch: 10, identity: 0.688

cgtttacgtttgccgacgatttaactaaacag	CRISPR spacer
cgtttacgtttgccgataatttacgcatttgc	Protospacer
****************..*****  .*  ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

482623 : 493387

Enterobacteria_phage(60.0%)

integrase

attL 479005:479021|attR 487802:487818

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
479005:479021	attL	NA	NA	NA	NA
WP_039773487.1\|482623_483733_-	NAD(P)-dependent alcohol dehydrogenase	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	2.3e-32	25.9
WP_020839656.1\|484203_485463_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	3.7e-74	41.2
WP_000970946.1\|485516_486512_-	site-specific DNA-methyltransferase	S0A236	Cellulophaga_phage	3.5e-19	24.2
WP_010376679.1\|486567_486804_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000667328.1\|486800_487364_+	type II restriction endonuclease PvuII	A0A1B0UXL9	Roseobacter_phage	7.2e-30	42.9
WP_000210078.1\|487583_488150_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	7.7e-56	62.7
487802:487818	attR	NA	NA	NA	NA
WP_000984211.1\|488166_488412_-	transcriptional regulator	Q7M294	Enterobacteria_phage	6.3e-31	76.5
WP_000198637.1\|488408_489146_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	3.4e-80	64.9
WP_000556591.1\|489683_489950_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.7e-29	70.5
WP_000980371.1\|489946_490498_+	ash family protein	Q7M2A7	Enterobacteria_phage	2.0e-24	60.9
WP_001216601.1\|490494_490722_+	hypothetical protein	NA	NA	NA	NA
WP_000743148.1\|490718_491039_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_000783718.1\|491053_493387_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	84.1

DBSCAN-SWA_2

1380165 : 1389336

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569167.1\|1380165_1381113_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
WP_000824856.1\|1381096_1381828_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|1381808_1381916_-	protein YohO	NA	NA	NA	NA
WP_001240418.1\|1381975_1382707_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_000272855.1\|1382929_1384615_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	3.7e-279	88.9
WP_000598637.1\|1384611_1385331_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950413.1\|1385377_1385845_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_001265354.1\|1385901_1386432_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703141.1\|1386603_1387062_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	2.4e-52	71.9
WP_000195335.1\|1387302_1389336_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_3

1472758 : 1480414

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000697846.1\|1472758_1473844_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_001023655.1\|1473843_1474743_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.7e-31	36.3
WP_000857533.1\|1474790_1475669_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.0e-108	65.2
WP_000973711.1\|1475669_1476221_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.7e-53	58.6
WP_000018223.1\|1476226_1477201_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000648782.1\|1477216_1477990_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000565907.1\|1477994_1479074_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.7e-16	24.1
WP_000126347.1\|1479100_1480414_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_4

1565289 : 1572516

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000394197.1\|1565289_1565709_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_000457650.1\|1565711_1566980_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.3e-225	91.7
WP_000208509.1\|1567425_1567638_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_024131163.1\|1567648_1567837_+	hypothetical protein	NA	NA	NA	NA
WP_001080667.1\|1568097_1569276_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	2.3e-107	56.7
WP_000377044.1\|1570316_1571012_+	phosphohydrolase	S4W232	Pandoravirus	2.8e-07	27.5
WP_001157323.1\|1571085_1572516_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_5

2280978 : 2289171

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000497451.1\|2280978_2281218_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
WP_011233072.1\|2282091_2282901_+	cytolethal distending toxin S-CDT	A5LH53	Enterobacteria_phage	4.2e-63	50.4
WP_001277616.1\|2282973_2283351_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
WP_000158843.1\|2283498_2284041_-	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
WP_011233073.1\|2284232_2284961_-	pertussis-like toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	4.1e-62	52.9
WP_011233074.1\|2284977_2285391_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	1.4e-19	38.6
WP_000915986.1\|2286337_2287462_-	type III secretion system effector SopF	NA	NA	NA	NA
WP_000444503.1\|2287920_2289171_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6

DBSCAN-SWA_6

2539614 : 2549312

Ralstonia_phage(16.67%)

integrase,protease

attL 2534143:2534157|attR 2548048:2548062

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2534143:2534157	attL	NA	NA	NA	NA
WP_011233091.1\|2539614_2539992_+\|integrase	integrase	A0A077KET4	Ralstonia_phage	2.6e-20	41.0
WP_001117984.1\|2540153_2540351_+	hypothetical protein	NA	NA	NA	NA
WP_000274276.1\|2541919_2542450_+	hypothetical protein	NA	NA	NA	NA
WP_000934064.1\|2542948_2545225_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000520789.1\|2545255_2545576_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000447499.1\|2545899_2546121_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000125879.1\|2546250_2548197_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
2548048:2548062	attR	NA	NA	NA	NA
WP_001201759.1\|2548193_2549312_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	8.1e-09	39.8

DBSCAN-SWA_7

3103872 : 3147979

Salmonella_phage(50.77%)

coat,holin,portal,lysis,protease,integrase,terminase

attL 3134060:3134073|attR 3145355:3145368

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000915523.1\|3103872_3104235_+	GtrA family protein	I1TED9	Salmonella_phage	3.9e-61	100.0
WP_000703606.1\|3104231_3105164_+	glycosyltransferase family 2 protein	I1TED8	Salmonella_phage	1.2e-175	99.7
WP_000129927.1\|3106067_3108071_-	endorhamnosidase	Q76H47	Enterobacteria_phage	0.0e+00	99.9
WP_000532177.1\|3108206_3108455_+	Arc family DNA-binding protein	Q76H48	Enterobacteria_phage	1.8e-38	100.0
WP_071533035.1\|3108475_3108769_-	hypothetical protein	Q76H12	Enterobacteria_phage	3.2e-50	100.0
WP_000868979.1\|3108907_3110839_-	hypothetical protein	I1TEJ6	Salmonella_phage	0.0e+00	99.1
WP_011233121.1\|3110838_3112176_-	phage DNA ejection protein	A0A1R3Y5Q4	Salmonella_virus	2.8e-242	99.3
WP_000964851.1\|3112218_3112908_-	hypothetical protein	I1TEJ4	Salmonella_phage	2.9e-81	100.0
WP_000627703.1\|3112910_3113366_-	DUF2824 family protein	E7C9U3	Salmonella_phage	1.8e-87	100.0
WP_000774919.1\|3113365_3114004_-	hypothetical protein	A8CGD2	Salmonella_phage	6.3e-91	100.0
WP_001122416.1\|3114007_3115426_-	Packaged DNA stabilization protein gp10	A0A220NQZ5	Salmonella_phage	2.4e-276	99.8
WP_001166094.1\|3115385_3115886_-	packaged DNA stabilization protein p27	E7C9U0	Salmonella_phage	1.2e-89	98.8
WP_000538674.1\|3115869_3116430_-	hypothetical protein	E7C9T9	Salmonella_phage	1.3e-103	100.0
WP_001196936.1\|3116470_3117763_-\|coat	coat protein	A0A075B8L2	Enterobacteria_phage	2.5e-243	99.8
WP_000433852.1\|3117762_3118674_-	scaffold protein	A0A192Y6T4	Salmonella_phage	4.9e-161	100.0
WP_000774658.1\|3118687_3120865_-\|portal	portal protein p19	I6R968	Salmonella_phage	0.0e+00	98.6
WP_000417866.1\|3120864_3122364_-\|terminase	terminase	A0A2H4FUR5	Salmonella_phage	4.8e-307	100.0
WP_000729925.1\|3122341_3122830_-	hypothetical protein	O80290	Bacteriophage	2.9e-88	100.0
WP_012532521.1\|3122833_3123238_-	hypothetical protein	A0A192Y6U9	Salmonella_phage	1.5e-66	99.3
WP_000808100.1\|3123240_3123483_-	DUF2560 family protein	A0A192Y6S9	Salmonella_phage	1.0e-33	100.0
WP_001028469.1\|3123806_3124328_-	DNA-binding protein	H6WRZ8	Salmonella_phage	1.9e-101	100.0
WP_011233123.1\|3124540_3124990_-\|lysis	lysis protein	A0A2D1GLQ7	Escherichia_phage	3.0e-63	87.8
WP_001167374.1\|3125007_3125445_-	lysozyme	Q5G8R3	Enterobacteria_phage	6.3e-74	97.9
WP_000738703.1\|3125428_3125755_-\|holin	phage holin, lambda family	Q5G8R5	Enterobacteria_phage	1.7e-52	100.0
WP_001235452.1\|3126189_3126813_-	antitermination protein	K7PM87	Enterobacteria_phage	8.3e-96	87.0
WP_000994515.1\|3126809_3126998_-	protein ninH	K7PH29	Enterobacteria_phage	1.9e-27	100.0
WP_001046347.1\|3126994_3127357_-	RusA family crossover junction endodeoxyribonuclease	A5VW85	Enterobacteria_phage	7.8e-62	98.3
WP_000002244.1\|3127353_3127644_-	DUF1364 domain-containing protein	A0A192Y6R9	Salmonella_phage	1.0e-51	100.0
WP_001286918.1\|3127636_3127849_-	hypothetical protein	K7PK10	Enterobacteria_phage	4.7e-35	98.6
WP_000950962.1\|3127841_3128018_-	protein ninF	A0A220NRM2	Escherichia_phage	1.9e-26	100.0
WP_011233124.1\|3128010_3128352_-	DUF2591 family protein	Q76H72	Enterobacteria_phage	5.1e-63	99.1
WP_000113770.1\|3128354_3128531_-	NinE family protein	Q76H73	Enterobacteria_phage	1.0e-27	100.0
WP_000679702.1\|3128497_3128671_-	hypothetical protein	C6ZR56	Salmonella_phage	5.2e-32	100.0
WP_000811302.1\|3128667_3129114_-	recombination protein NinB	I6R0N7	Salmonella_phage	7.8e-80	98.6
WP_000049340.1\|3129070_3129367_-	hypothetical protein	E7C9R7	Salmonella_phage	6.8e-48	99.0
WP_000344579.1\|3129369_3129690_-	hypothetical protein	I6R992	Salmonella_phage	1.1e-22	59.4
WP_000975822.1\|3129701_3129857_-	hypothetical protein	A0A2H4FWM4	Salmonella_phage	2.4e-20	100.0
WP_000248682.1\|3129868_3130075_-	hypothetical protein	I6RSI5	Salmonella_phage	1.1e-31	100.0
WP_000131495.1\|3130150_3131587_-	AAA family ATPase	A0A220NQX0	Salmonella_phage	3.0e-274	99.2
WP_000065656.1\|3131576_3132476_-	hypothetical protein	E7C9R4	Salmonella_phage	2.5e-154	98.7
WP_001125982.1\|3132468_3132615_-	DUF2740 family protein	A0A0M4S617	Salmonella_phage	1.9e-19	100.0
WP_001103491.1\|3132649_3132931_-	hypothetical protein	Q76H54	Enterobacteria_phage	1.6e-43	98.9
WP_000182204.1\|3133041_3133257_-	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.3e-32	100.0
WP_000712403.1\|3133367_3134057_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.3e-126	100.0
3134060:3134073	attL	NA	NA	NA	NA
WP_000680395.1\|3134414_3134660_+	hypothetical protein	NA	NA	NA	NA
WP_000786965.1\|3134698_3134908_-	fumarate hydratase FumD	I6R0R9	Salmonella_phage	1.9e-28	92.8
WP_000216028.1\|3135271_3135574_+	hypothetical protein	B8K1E6	Salmonella_phage	8.2e-49	97.0
WP_001066166.1\|3135586_3136174_-	superinfection exclusion protein B	A0A0M4R594	Salmonella_phage	1.4e-84	98.5
WP_000213983.1\|3136387_3136582_+	hypothetical protein	A0A075B8G0	Enterobacteria_phage	2.5e-30	100.0
WP_000542409.1\|3136618_3136912_+	hypothetical protein	B8K1E3	Salmonella_phage	4.1e-45	95.7
WP_001200114.1\|3137226_3137379_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	B8K1E2	Salmonella_phage	9.2e-25	98.0
WP_000156730.1\|3137359_3137548_+	DUF5444 family protein	A0A1R3Y5S5	Salmonella_virus	1.6e-31	100.0
WP_000902088.1\|3137537_3137681_+	hypothetical protein	A0A1R3Y5R4	Salmonella_virus	2.7e-18	97.9
WP_001046981.1\|3137677_3138385_+	recombinase	A0A1R3Y600	Salmonella_virus	4.1e-139	100.0
WP_001111312.1\|3138715_3139009_+	DUF2856 family protein	A0A1R3Y5T7	Salmonella_virus	3.2e-50	100.0
WP_001214769.1\|3139019_3139190_+	DUF2737 family protein	I6S642	Salmonella_phage	5.7e-23	94.6
WP_000665851.1\|3139186_3139846_+	hypothetical protein	A0A1R3Y5S0	Salmonella_virus	2.2e-62	61.6
WP_001017879.1\|3139842_3140343_+	ead/Ea22-like family protein	A0A1R3Y5T1	Salmonella_virus	1.0e-64	62.6
WP_000582227.1\|3140342_3141098_+	hypothetical protein	A0A1R3Y5Q7	Salmonella_virus	5.5e-150	99.2
WP_000208071.1\|3141108_3142194_+	DUF550 domain-containing protein	A0A1R3Y5Q8	Salmonella_virus	2.0e-153	76.7
WP_000002128.1\|3142186_3142471_+	ASCH domain-containing protein	A0A1R3Y5R3	Salmonella_virus	4.1e-50	100.0
WP_157804913.1\|3142539_3142680_+	hypothetical protein	A0A0M4QWX3	Salmonella_phage	7.2e-16	95.7
WP_000051901.1\|3142909_3144073_+\|integrase	site-specific integrase	A0A220NQU7	Salmonella_phage	4.1e-229	99.7
WP_000893229.1\|3144278_3145529_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.0e-97	47.5
3145355:3145368	attR	NA	NA	NA	NA
WP_001285277.1\|3145540_3146644_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	9.0e-61	39.8
WP_001043666.1\|3146926_3147979_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.3e-112	58.5

DBSCAN-SWA_8

3216412 : 3343263

127

Salmonella_phage(51.85%)

tail,tRNA,holin,portal,lysis,plate,capsid,head,integrase,terminase

attL 3278554:3278602|attR 3344363:3344411

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000108009.1\|3216412_3216907_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_000371505.1\|3216922_3218806_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000145239.1\|3218802_3219798_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_000367632.1\|3219808_3220852_+	ImpA family type VI secretion system protein	NA	NA	NA	NA
WP_001670675.1\|3221382_3222114_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	6.4e-39	39.9
WP_000917872.1\|3222177_3222645_+	ribonuclease HI	J9Q745	Salmonella_phage	4.7e-51	58.9
WP_000801242.1\|3222641_3223364_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001052769.1\|3223398_3224154_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_039755476.1\|3224225_3225593_+	murein transglycosylase D	A0A0A7NU10	Lactobacillus_phage	9.0e-10	32.5
WP_000207237.1\|3225648_3226419_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001230970.1\|3226496_3227297_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_001127560.1\|3227428_3228604_-	MFS transporter	NA	NA	NA	NA
WP_000648518.1\|3228708_3229623_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000154860.1\|3229644_3230448_-	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	5.1e-37	34.6
WP_001235092.1\|3236450_3239024_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.5
WP_000992634.1\|3239153_3239885_-	polyphenol oxidase	NA	NA	NA	NA
WP_000079130.1\|3239881_3240862_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000197660.1\|3240993_3241731_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000178449.1\|3242002_3242341_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_010989056.1\|3242444_3242492_+	hypothetical protein	NA	NA	NA	NA
WP_000200087.1\|3242591_3243752_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_000210975.1\|3243712_3244621_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_000225183.1\|3244678_3245800_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_001168062.1\|3245809_3246880_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
WP_001212373.1\|3247319_3247838_+	YfiR family protein	NA	NA	NA	NA
WP_001030993.1\|3247830_3249051_+	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	1.7e-07	37.0
WP_000065257.1\|3249207_3249555_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000469802.1\|3249595_3250363_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000043266.1\|3250407_3250956_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000256453.1\|3250974_3251223_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_000460060.1\|3251474_3252836_-	signal recognition particle protein	NA	NA	NA	NA
WP_001537507.1\|3253001_3253793_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_127908301.1\|3253812_3255099_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_000271804.1\|3255228_3255834_+	hypothetical protein	NA	NA	NA	NA
WP_001518875.1\|3255874_3256465_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001059155.1\|3256587_3257466_+	NAD(+) kinase	NA	NA	NA	NA
WP_000880965.1\|3257551_3259213_+	DNA repair protein RecN	NA	NA	NA	NA
WP_001203433.1\|3259361_3259700_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001112990.1\|3259865_3260156_-	RnfH family protein	NA	NA	NA	NA
WP_000242604.1\|3260145_3260622_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_001518569.1\|3260770_3261253_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_039773610.1\|3261871_3273346_+	biofilm-associated protein BapA	NA	NA	NA	NA
WP_000533854.1\|3273410_3274820_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_000196157.1\|3274816_3276997_+	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	1.3e-18	34.0
WP_000342601.1\|3277004_3278168_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
3278554:3278602	attL	NA	NA	NA	NA
WP_001039750.1\|3278697_3279075_+	hypothetical protein	NA	NA	NA	NA
WP_001775272.1\|3279161_3279380_-	positive regulator of late gene transcription	E5G6Q4	Salmonella_phage	4.9e-27	75.0
WP_001011749.1\|3279447_3280548_-	phage late control D family protein	E5G6Q3	Salmonella_phage	3.0e-189	91.8
WP_000980405.1\|3280544_3281030_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	9.4e-71	93.2
WP_161976233.1\|3281029_3283576_-\|tail	phage tail tape measure protein	A0A2H4JGB2	uncultured_Caudovirales_phage	1.2e-113	42.7
WP_000763315.1\|3283802_3283922_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.2e-14	94.9
WP_001280965.1\|3283936_3284239_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.3e-42	93.9
WP_001207653.1\|3284293_3284809_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	2.7e-92	99.4
WP_000046101.1\|3284818_3285991_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	9.8e-223	99.5
WP_000388790.1\|3286093_3286312_-	Hin recombinase	A0A1S6L009	Salmonella_phage	1.4e-29	90.3
WP_000161709.1\|3286525_3287248_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA
WP_000006337.1\|3287445_3287853_-\|tail	tail assembly protein	A0A1B0V844	Salmonella_phage	4.1e-59	84.2
WP_001274654.1\|3287859_3289479_-\|tail	phage tail protein	E5G6P0	Salmonella_phage	3.2e-155	91.2
WP_001086800.1\|3289475_3290081_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-117	99.0
WP_000268328.1\|3290073_3290982_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	3.5e-159	99.7
WP_000177408.1\|3290968_3291328_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	6.8e-58	96.6
WP_000993747.1\|3291324_3291903_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.1e-107	99.0
WP_000343944.1\|3291971_3292418_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-66	90.4
WP_001039961.1\|3292410_3292842_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.1e-75	99.3
WP_024131238.1\|3292937_3293366_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	3.3e-67	97.9
WP_000731034.1\|3293362_3293740_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.5e-60	99.2
WP_001069889.1\|3293744_3294254_-	lysozyme	A0A1S6KZY9	Salmonella_phage	1.2e-92	97.6
WP_000171565.1\|3294234_3294450_-	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
WP_000868184.1\|3294453_3294657_-\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_000673540.1\|3294656_3295121_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	2.4e-84	98.1
WP_000059175.1\|3295214_3295865_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	2.4e-114	99.5
WP_000730751.1\|3295868_3296933_-\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	1.3e-194	98.3
WP_000216272.1\|3296949_3297783_-\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	6.1e-126	87.4
WP_001098454.1\|3297925_3299692_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	96.3
WP_011233140.1\|3299691_3300735_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	1.2e-174	86.0
WP_000080839.1\|3300783_3301479_-	hypothetical protein	NA	NA	NA	NA
WP_000789324.1\|3301498_3302563_-	hypothetical protein	NA	NA	NA	NA
WP_000835188.1\|3303632_3303851_-	hypothetical protein	NA	NA	NA	NA
WP_001217561.1\|3303946_3304180_-	DinI family protein	A0A1S6L014	Salmonella_phage	2.2e-33	92.2
WP_001154438.1\|3304191_3304380_-	hypothetical protein	A0A1S6L006	Salmonella_phage	7.9e-26	96.8
WP_000301196.1\|3304547_3306950_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	95.5
WP_000104130.1\|3306940_3307801_-	DNA adenine methylase	E5G6L8	Salmonella_phage	3.4e-132	81.8
WP_001090717.1\|3307797_3308382_-	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	1.1e-76	73.7
WP_000785510.1\|3308378_3308606_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.0e-35	94.7
WP_001244240.1\|3308605_3308839_-	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	9.8e-26	84.4
WP_000963479.1\|3308906_3309248_-	DUF5347 domain-containing protein	A0A1S6L019	Salmonella_phage	4.6e-56	99.1
WP_000956167.1\|3309211_3309412_-	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	4.6e-32	97.0
WP_000460852.1\|3309419_3309929_-	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.3e-83	94.1
WP_000102106.1\|3309961_3310204_-	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	2.3e-38	98.8
WP_000052560.1\|3310320_3310953_+	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	1.4e-66	58.6
WP_000027757.1\|3310956_3311982_+\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	2.7e-200	98.2
WP_001177838.1\|3312225_3312474_+	hypothetical protein	NA	NA	NA	NA
WP_000136561.1\|3314098_3315217_-	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_011233142.1\|3315896_3317597_-	hypothetical protein	F1BUJ7	Cronobacter_phage	9.2e-222	80.9
WP_000200793.1\|3317599_3318145_-	hypothetical protein	F1BUJ9	Cronobacter_phage	1.9e-59	72.5
WP_000267952.1\|3318116_3318842_-	hypothetical protein	F1BUK1	Cronobacter_phage	2.3e-68	56.8
WP_000421117.1\|3318831_3319359_-\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	3.1e-51	52.6
WP_000084304.1\|3319376_3321404_-\|tail	phage tail protein	F1BUK3	Cronobacter_phage	1.2e-154	47.9
WP_001001826.1\|3321413_3322001_-	hypothetical protein	F1BUK5	Cronobacter_phage	2.4e-89	82.1
WP_000136924.1\|3321993_3323178_-	hypothetical protein	F1BUK6	Cronobacter_phage	2.8e-177	77.6
WP_001002797.1\|3323174_3323504_-	DUF2590 family protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
WP_000811085.1\|3323500_3325471_-\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	5.6e-271	70.1
WP_000411339.1\|3325658_3325916_-	hypothetical protein	A5X9I7	Aeromonas_virus	3.6e-21	63.4
WP_000376372.1\|3326062_3326395_-	hypothetical protein	F1BUL2	Cronobacter_phage	2.6e-35	70.0
WP_039755423.1\|3326394_3326736_-	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	3.8e-50	90.1
WP_001154425.1\|3326732_3327026_-\|holin	holin	C7BGD7	Burkholderia_phage	1.3e-14	46.2
WP_000166742.1\|3327035_3327491_-	DUF2597 family protein	F1BUL4	Cronobacter_phage	2.1e-56	71.5
WP_000220202.1\|3327487_3328615_-	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	5.6e-175	83.5
WP_000560074.1\|3328611_3329319_-	hypothetical protein	F1BUL6	Cronobacter_phage	6.3e-100	75.2
WP_000084220.1\|3329315_3329822_-\|tail	phage tail protein	F1BUL7	Cronobacter_phage	5.2e-64	69.8
WP_000447487.1\|3329818_3330307_-\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	2.3e-64	82.7
WP_001218536.1\|3330367_3331069_-\|terminase	terminase	F1BUM0	Cronobacter_phage	3.2e-88	67.2
WP_000550496.1\|3331072_3332095_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	1.1e-158	81.2
WP_000018798.1\|3332156_3332957_-\|capsid	phage capsid scaffolding protein	F1BUM4	Cronobacter_phage	3.2e-76	54.8
WP_001151947.1\|3333117_3334893_+	hypothetical protein	F1BUM5	Cronobacter_phage	7.0e-289	82.6
WP_000038210.1\|3334889_3335951_+\|portal	phage portal protein	F1BUM7	Cronobacter_phage	6.7e-162	76.8
WP_001552031.1\|3335947_3336271_+	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	8.0e-50	92.3
WP_000960960.1\|3336244_3336463_-	hypothetical protein	E5G6M0	Salmonella_phage	2.8e-06	49.1
WP_001137729.1\|3336575_3338327_-	replication endonuclease	F1BUM9	Cronobacter_phage	2.2e-255	75.0
WP_016504913.1\|3338453_3338597_-	hypothetical protein	NA	NA	NA	NA
WP_011233149.1\|3338637_3339450_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	F1BUN1	Cronobacter_phage	8.8e-122	84.3
WP_000057334.1\|3339440_3339671_-	DUF2732 family protein	NA	NA	NA	NA
WP_000022786.1\|3339738_3340140_-	hypothetical protein	F1BUN2	Cronobacter_phage	1.4e-48	66.9
WP_000643374.1\|3340554_3340782_-	DUF2724 domain-containing protein	NA	NA	NA	NA
WP_023211710.1\|3340791_3341295_-	phage protein	F1BUN6	Cronobacter_phage	4.5e-60	72.5
WP_000687097.1\|3341677_3342250_+	phage repressor protein CI	F1BUN8	Cronobacter_phage	1.7e-58	53.8
WP_012532529.1\|3342249_3343263_+\|integrase	tyrosine-type recombinase/integrase	F1BUN9	Cronobacter_phage	2.5e-174	85.1
3344363:3344411	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009049

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection